<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 10:52:02"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E703114" ref_strand="+" ref_description="SGN-E703114 [FA20CD06]">
      <seq>ggttattgccaagcaatccaaggagaagcatattgagaagcatgataatgaatctctgagtcagaaactggataacggggatgcagtaactaagaaaaaaagtaagggcgagcagagtgaattgccacagaatggaacaagaatggtgcttgatggagtgaggcatccagtgccgtatcacaaaaaagagcaaaagggaggcgatgaatatcagcagacttctgcaaaccatttgaaacttgtacacaatgttgtcaatggtgcaactaccaagcagcacaaggtgaaagagaagcgtattgagaagcatgataatgaatctctgagtcagaaactggataacggggatgcagtaactaagaaaaaaagtaagagcgagcagagtgaattgccacaaaatggaacaagaatggtgcttgaaggagtgaggcatccagcgccgtctcacaaaaaagagcaaaagggaggtgataaatatcagcatacttctgcaaaccatttgaaacttatacacaatgttgtcaatgttgcaactaccaagcagcacaaggtgaaagagaagcgtgattccccacaagaacagaaggaagaaaagattgagtcgttacatagcagagaactggatttgaagggtggtaagttggcttcggatgagaagagtaaaccaaaagctggaaagctaacactttcagatcttttcaggaggtgagtttaactgtatcttgtaaaatcatatcctcttcaaaagaggagcaagagctgtgtcttaccttgtttaccccttcttttttaccataggagtgtctagatctcatgtacatggcaatagaatgagccgtaattgccattttttgactgtgacatggtaattatttattattattacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="9044" stop="10531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9344" g_stop="10231" g_length="888"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="888" r_length="888" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E703114" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>888</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9344" e_stop="10231"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTATTGCCAAGCAATCCAAGGAGAAGCATATTGAGAAGCATGATAATGAATCTCTGAGTCAGAAACTGGATAACGGGGATGCAGTAACTAAGAAAAAAAGTAAGGGCGAGCAGAGTGAATTGCCACAGAATGGAACAAGAATGGTGCTTGATGGAGTGAGGCATCCAGTGCCGTATCACAAAAAAGAGCAAAAGGGAGGCGATGAATATCAGCAGACTTCTGCAAACCATTTGAAACTTGTACACAATGTTGTCAATGGTGCAACTACCAAGCAGCACAAGGTGAAAGAGAAGCGTATTGAGAAGCATGATAATGAATCTCTGAGTCAGAAACTGGATAACGGGGATGCAGTAACTAAGAAAAAAAGTAAGAGCGAGCAGAGTGAATTGCCACAAAATGGAACAAGAATGGTGCTTGAAGGAGTGAGGCATCCAGCGCCGTCTCACAAAAAAGAGCAAAAGGGAGGTGATAAATATCAGCATACTTCTGCAAACCATTTGAAACTTATACACAATGTTGTCAATGTTGCAACTACCAAGCAGCACAAGGTGAAAGAGAAGCGTGATTCCCCACAAGAACAGAAGGAAGAAAAGATTGAGTCGTTACATAGCAGAGAACTGGATTTGAAGGGTGGTAAGTTGGCTTCGGATGAGAAGAGTAAACCAAAAGCTGGAAAGCTAACACTTTCAGATCTTTTCAGGAGGTGAGTTTAACTGTATCTTGTAAAATCATATCCTCTTCAAAAGAGGAGCAAGAGCTGTGTCTTACCTTGTTTACCCCTTCTTTTTTACCATAGGAGTGTCTAGATCTCATGTACATGGCAATAGAATGAGCCGTAATTGCCATTTTTTGACTGTGACATGGTAATTATTTATTATTATTACAT</genome_strand>
        <mrna_strand>GGTTATTGCCAAGCAATCCAAGGAGAAGCATATTGAGAAGCATGATAATGAATCTCTGAGTCAGAAACTGGATAACGGGGATGCAGTAACTAAGAAAAAAAGTAAGGGCGAGCAGAGTGAATTGCCACAGAATGGAACAAGAATGGTGCTTGATGGAGTGAGGCATCCAGTGCCGTATCACAAAAAAGAGCAAAAGGGAGGCGATGAATATCAGCAGACTTCTGCAAACCATTTGAAACTTGTACACAATGTTGTCAATGGTGCAACTACCAAGCAGCACAAGGTGAAAGAGAAGCGTATTGAGAAGCATGATAATGAATCTCTGAGTCAGAAACTGGATAACGGGGATGCAGTAACTAAGAAAAAAAGTAAGAGCGAGCAGAGTGAATTGCCACAAAATGGAACAAGAATGGTGCTTGAAGGAGTGAGGCATCCAGCGCCGTCTCACAAAAAAGAGCAAAAGGGAGGTGATAAATATCAGCATACTTCTGCAAACCATTTGAAACTTATACACAATGTTGTCAATGTTGCAACTACCAAGCAGCACAAGGTGAAAGAGAAGCGTGATTCCCCACAAGAACAGAAGGAAGAAAAGATTGAGTCGTTACATAGCAGAGAACTGGATTTGAAGGGTGGTAAGTTGGCTTCGGATGAGAAGAGTAAACCAAAAGCTGGAAAGCTAACACTTTCAGATCTTTTCAGGAGGTGAGTTTAACTGTATCTTGTAAAATCATATCCTCTTCAAAAGAGGAGCAAGAGCTGTGTCTTACCTTGTTTACCCCTTCTTTTTTACCATAGGAGTGTCTAGATCTCATGTACATGGCAATAGAATGAGCCGTAATTGCCATTTTTTGACTGTGACATGGTAATTATTTATTATTATTACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E371750" ref_strand="+" ref_description="SGN-E371750 [TUS-30-I15](-)">
      <seq>agggaggtgataaatatcagcatacttttgcaaaccatttgaaaattatacacaatgttgtcaatgttgcaactaccaagcagcacaaggtgaaaaagaagggtgattccccacaaaaacaaaaggaaaaaaagattgagtcgttacatagcaaaaaactggatttgaagggtggtaagttggctttggatgagaaaagtaaaccaaaagctggaaagctaacactttcagattttttcaggaggtgagtttaactgtattttgtaaaatcatatccttttcaaaaaaggagcaaaagctgtgttttaccttgtttacccctttttttttaccataggagtgtttagatttcatgtacatggcaataaaatgagccgtaattgccatttttttgactgtgacatggtaattatttttttttatttcatatccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="9505" stop="84932"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9805" g_stop="10240" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10241" i_stop="10598" i_length="358">
            <donor d_prob="0.000" d_score="0.84"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10599" g_stop="10626" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="465" r_length="28" r_score="0.536"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E371750" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371750" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9805" e_stop="10240"/>
          <exon e_start="10599" e_stop="10626"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGAGGTGATAAATATCAGCATACTTCTGCAAACCATTTGAAACTTATACACAATGTTGTCAATGTTGCAACTACCAAGCAGCACAAGGTGAAAGAGAAGCGTGATTCCCCACAAGAACAGAAGGAAGAAAAGATTGAGTCGTTACATAGCAGAGAACTGGATTTGAAGGGTGGTAAGTTGGCTTCGGATGAGAAGAGTAAACCAAAAGCTGGAAAGCTAACACTTTCAGATCTTTTCAGGAGGTGAGTTTAACTGTATCTTGTAAAATCATATCCTCTTCAAAAGAGGAGCAAGAGCTGTGTCTTACCTTGTTTACCCCTTCTTTTTTACCATAGGAGTGTCTAGATCTCATGTACATGGCAATAGAATGAGCCGTAATTGCCA-TTTTTTGACTGTGACATGGTAATTATTTATTATTATTACATATCAATGGGGTGGCTTCGATTTTAGTGGTAGTTTAATTTTCATGTTTGAAGTACTCCTCTCTTATCTTCTTGTCATTCATTTCATGGTAAGCTGTCTTCAGTGTTTCATTTTATCCCCCTCTTATCATTATAATTTTTACTGCTTGCTTTCGCTACGAAAAAATAATTATACCAACGGCAAAAATATAAAGTATTCTCTTTGTCCAATAATAGTTGTCTATTATTAACTTTTGTATACTTCATAAAAAATTATAAATAAAAGAGTAATTTTACTATATCAGCCTTTAAATATAATAAATGCAATGGAAAAAATTATCTATTGATTTCATATAATGAACGAATATTGTTGGATATTTTAAAATAATAGAACTGGAGGAAGAGGAAGAAGAATAAAT</genome_strand>
        <mrna_strand>AGGGAGGTGATAAATATCAGCATACTTTTGCAAACCATTTGAAAATTATACACAATGTTGTCAATGTTGCAACTACCAAGCAGCACAAGGTGAAAAAGAAGGGTGATTCCCCACAAAAACAAAAGGAAAAAAAGATTGAGTCGTTACATAGCAAAAAACTGGATTTGAAGGGTGGTAAGTTGGCTTTGGATGAGAAAAGTAAACCAAAAGCTGGAAAGCTAACACTTTCAGATTTTTTCAGGAGGTGAGTTTAACTGTATTTTGTAAAATCATATCCTTTTCAAAAAAGGAGCAAAAGCTGTGTTTTACCTTGTTTACCCCTTTTTTTTTACCATAGGAGTGTTTAGATTTCATGTACATGGCAATAAAATGAGCCGTAATTGCCATTTTTTTGACTGTGACATGGTAATTATTTTTTTTTATTTCATATCCAAAAA......................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E371751" ref_strand="+" ref_description="SGN-E371751 [TUS-30-I15]">
      <seq>agggaggtgataaatatcagcatacttctgcaaaccatttgaaacttatacacaatgttgtcaatgttgcaactaccaagcagcacaaggtgaaagagaagcgtgattccccacaagaacagaaggaagaaaagattgagtcgttacatagcagagaactggatttgaagggtggtaagttggcttcggatgagaagagtaaaccaaaagctggaaagctaacactttcagatcttttcaggaggtgagtttaactgtatcttgtaaaatcatatcctcttcaaaagaggagcaagagctgtgtcttaccttgtttaccccttcttttttaccataggagtgtctagatctcatgtacatggcaatagaatgagccgtaattgccatttttttgactgtgacatggtaattatttattattattacatatcanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="9505" stop="84932"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9805" g_stop="10240" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10241" i_stop="10598" i_length="358">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10599" g_stop="10626" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="465" r_length="28" r_score="0.536"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E371751" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371751" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9805" e_stop="10240"/>
          <exon e_start="10599" e_stop="10626"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGAGGTGATAAATATCAGCATACTTCTGCAAACCATTTGAAACTTATACACAATGTTGTCAATGTTGCAACTACCAAGCAGCACAAGGTGAAAGAGAAGCGTGATTCCCCACAAGAACAGAAGGAAGAAAAGATTGAGTCGTTACATAGCAGAGAACTGGATTTGAAGGGTGGTAAGTTGGCTTCGGATGAGAAGAGTAAACCAAAAGCTGGAAAGCTAACACTTTCAGATCTTTTCAGGAGGTGAGTTTAACTGTATCTTGTAAAATCATATCCTCTTCAAAAGAGGAGCAAGAGCTGTGTCTTACCTTGTTTACCCCTTCTTTTTTACCATAGGAGTGTCTAGATCTCATGTACATGGCAATAGAATGAGCCGTAATTGCCA-TTTTTTGACTGTGACATGGTAATTATTTATTATTATTACATATCAATGGGGTGGCTTCGATTTTAGTGGTAGTTTAATTTTCATGTTTGAAGTACTCCTCTCTTATCTTCTTGTCATTCATTTCATGGTAAGCTGTCTTCAGTGTTTCATTTTATCCCCCTCTTATCATTATAATTTTTACTGCTTGCTTTCGCTACGAAAAAATAATTATACCAACGGCAAAAATATAAAGTATTCTCTTTGTCCAATAATAGTTGTCTATTATTAACTTTTGTATACTTCATAAAAAATTATAAATAAAAGAGTAATTTTACTATATCAGCCTTTAAATATAATAAATGCAATGGAAAAAATTATCTATTGATTTCATATAATGAACGAATATTGTTGGATATTTTAAAATAATAGAACTGGAGGAAGAGGAAGAAGAATAAAT</genome_strand>
        <mrna_strand>AGGGAGGTGATAAATATCAGCATACTTCTGCAAACCATTTGAAACTTATACACAATGTTGTCAATGTTGCAACTACCAAGCAGCACAAGGTGAAAGAGAAGCGTGATTCCCCACAAGAACAGAAGGAAGAAAAGATTGAGTCGTTACATAGCAGAGAACTGGATTTGAAGGGTGGTAAGTTGGCTTCGGATGAGAAGAGTAAACCAAAAGCTGGAAAGCTAACACTTTCAGATCTTTTCAGGAGGTGAGTTTAACTGTATCTTGTAAAATCATATCCTCTTCAAAAGAGGAGCAAGAGCTGTGTCTTACCTTGTTTACCCCTTCTTTTTTACCATAGGAGTGTCTAGATCTCATGTACATGGCAATAGAATGAGCCGTAATTGCCATTTTTTTGACTGTGACATGGTAATTATTTATTATTATTACATATCANAAAA......................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E285622" ref_strand="+" ref_description="SGN-E285622 [cLES-5-I22]">
      <seq>agggaggtgataaatatcagcatacttctgcaaaccatttgaaacttatacacaatgttgtcaatgttgcaactaccaagcagcacaaggtgaaagagaagcgtgattccccacaagaacagaaggaagaaaagattgagtcgttacatagcagagaactggatttgaagggtggtaagttggcttcggatgagaagagtaaaccaaaagctggaaagctaacactttcagatcttttcaggaggtgagtttaactgtatcttgtaaaatcatatcctcttcaaaagaggagcaagagctgtgtcttaccttgtttaccccttcttttttaccataggagtgtctagatctcatgtacatggcaatagaatgagccgtaattgccatttttttgactgtgacatggtaattatttattattattacatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="9505" stop="10533"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9805" g_stop="10233" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="430" r_length="430" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E285622" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9805" e_stop="10233"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGAGGTGATAAATATCAGCATACTTCTGCAAACCATTTGAAACTTATACACAATGTTGTCAATGTTGCAACTACCAAGCAGCACAAGGTGAAAGAGAAGCGTGATTCCCCACAAGAACAGAAGGAAGAAAAGATTGAGTCGTTACATAGCAGAGAACTGGATTTGAAGGGTGGTAAGTTGGCTTCGGATGAGAAGAGTAAACCAAAAGCTGGAAAGCTAACACTTTCAGATCTTTTCAGGAGGTGAGTTTAACTGTATCTTGTAAAATCATATCCTCTTCAAAAGAGGAGCAAGAGCTGTGTCTTACCTTGTTTACCCCTTCTTTTTTACCATAGGAGTGTCTAGATCTCATGTACATGGCAATAGAATGAGCCGTAATTGCCA-TTTTTTGACTGTGACATGGTAATTATTTATTATTATTACATAT</genome_strand>
        <mrna_strand>AGGGAGGTGATAAATATCAGCATACTTCTGCAAACCATTTGAAACTTATACACAATGTTGTCAATGTTGCAACTACCAAGCAGCACAAGGTGAAAGAGAAGCGTGATTCCCCACAAGAACAGAAGGAAGAAAAGATTGAGTCGTTACATAGCAGAGAACTGGATTTGAAGGGTGGTAAGTTGGCTTCGGATGAGAAGAGTAAACCAAAAGCTGGAAAGCTAACACTTTCAGATCTTTTCAGGAGGTGAGTTTAACTGTATCTTGTAAAATCATATCCTCTTCAAAAGAGGAGCAAGAGCTGTGTCTTACCTTGTTTACCCCTTCTTTTTTACCATAGGAGTGTCTAGATCTCATGTACATGGCAATAGAATGAGCCGTAATTGCCATTTTTTTGACTGTGACATGGTAATTATTTATTATTATTACATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E744777" ref_strand="+" ref_description="SGN-E744777 [GI|5420281]">
      <seq>gcacgagttttaaccagatacattcccatttttttcttacattctccatctttttctccccctttccatttgttcaacttttttcagaactctcttgtttcttcattggttcttaatcaagattgatcaagattcaatcttggtagagggtaactgaagaagagagtgaaagattcaattttttttccattcttgatttaggtttttttctgtaatcaagattcaatcttggagaggattaaagattctatttttttttcattcttgatttggggtttttcagttatcaagattgataagattcaatcttggttgagggtaactgaagaagagggttcaaaaacattttttttccattcttgatttggggtttttagtaaccaagtaaaagaaatggcaatcactgatgagaacaaacatcccttgattaaggaatcttctgttcgagtgaaagatagggctgaaatggctaccagaaaggttgttggagtggaaacaagaagcaaccgaagggttttgggcgcgattaatcagaatctagtgggtggtcaggggtatccttgtgttgttaacaagagaggattatctgatggaaatggattctgtgacaagaatcttcctgttcatggtcatcgaccaatcacgaggaaatatgcagcacaaattgctagctcccagaaacacagctcagaggaaaacaagaaacctaagatagcagctgaaagtttcagcgtctgggaggatgatatggaggcagctaatgataagcctgtccctatgtctttggagcaaacagaaaaagtgtcaaagggcaaggatcaaatgacatacattcaggaggttgaaatggaggatatctttgaggaggctgtaatagatatcgacggtgatgatgcaaagaaccatcttgcagctgttgaatatgtgggagatttgtttgctaactacagaacaatggaggttaatagctgtgcttctccatactatatggcacaacaggctgacatcaatgagagaatgcggtctatcttgattgactggctaattgaggtgcatcacaagtttgagctcagggaagagacgttgttcctgaccgtcaatttgattgaccggttcttggagaagcaaggcattgtcagaaagaagctccagcttgttggattggttgcaatgctactagcatgcaagtatgaggaggtttgtgctccactggtggaggatctggtgttgatttcggacaaagcctatacaaggaaggaggttcttgaaatggaaagcatgatgctcaacacactgcagtttaatatgtctgtcccaactgcatacgtttttatgcgaagatatctcaaggctgctcaatgtgacaggaagcttgagctgctgtccttcatgttggttgagctttgccttgtggagtatgaaatgctcaaatttccaccatccttcatagctgctgcagcaatctatacagctcagaccacactctacggtgtccagcagtggagcaagacgtgcgaggtgcacacaacgtactcagaagatcaacttctggagtgctcgagatcaattgttggctaccaccagaaggcagcaacagggaaactaacaggggtacataggaaatacagcatatcgaaatttgggtatgcagccaagtgtgagcctgcccattttcttgtgcagcagacacaagaatagaggagaagaggggcatgtacagttattactaactttatatgcaaattggggatatatttgtggggtgatggagaatttataggaaaagataacttagcaactaatggttgccccgggggatttcattatttctttttatagagttcattattattgcacttttactatgttcaacatttgaacatccctgaatttattgtttcagttacagtttttcatttacaaacagaaataaaaagtcacaattttctcagagtggttttgctttattgaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="14291" stop="84932"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14585" g_stop="15033" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="448" r_length="448" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15034" i_stop="15123" i_length="90">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15124" g_stop="15265" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="590" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15266" i_stop="15374" i_length="109">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15375" g_stop="15431" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="647" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15432" i_stop="15597" i_length="166">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15598" g_stop="15643" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="648" r_stop="693" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15644" i_stop="15755" i_length="112">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15756" g_stop="15887" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="694" r_stop="825" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15888" i_stop="15977" i_length="90">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.804" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15978" g_stop="16112" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="826" r_stop="960" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16113" i_stop="16412" i_length="300">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="16413" g_stop="16502" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="961" r_stop="1050" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="16503" i_stop="16582" i_length="80">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="16583" g_stop="16804" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1051" r_stop="1272" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="16805" i_stop="16894" i_length="90">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="16895" g_stop="16993" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1273" r_stop="1371" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="16994" i_stop="17090" i_length="97">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="17091" g_stop="17269" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1372" r_stop="1550" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="17270" i_stop="17346" i_length="77">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="17347" g_stop="17768" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="1551" r_stop="1972" r_length="422" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="17769" i_stop="18516" i_length="748">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="18517" g_stop="18532" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1973" r_stop="1988" r_length="16" r_score="0.812"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="18533" i_stop="19815" i_length="1283">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="19816" g_stop="19826" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1989" r_stop="1999" r_length="11" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E744777" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>2000</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E744777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14585" e_stop="15033"/>
          <exon e_start="15124" e_stop="15265"/>
          <exon e_start="15375" e_stop="15431"/>
          <exon e_start="15598" e_stop="15643"/>
          <exon e_start="15756" e_stop="15887"/>
          <exon e_start="15978" e_stop="16112"/>
          <exon e_start="16413" e_stop="16502"/>
          <exon e_start="16583" e_stop="16804"/>
          <exon e_start="16895" e_stop="16993"/>
          <exon e_start="17091" e_stop="17269"/>
          <exon e_start="17347" e_stop="17768"/>
          <exon e_start="18517" e_stop="18532"/>
          <exon e_start="19816" e_stop="19826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGTATTTTTAACCAGATACATTCCCATTTTTTTCTTACATTCTCCATCTTTTTCTCCCCCTTTCCATTTGTTCAACTTTTTTCAGAACTCTCTTGTTTCTTCATTGGTTCTTAATCAAGATTGATCAAGATTCAATCTTGGTAGAGGGTAACTGAAGAAGAGAGTGAAAGATTCAATTTTTTTTCCATTCTTGATTTAGGTTTTTTTCTGTAATCAAGATTCAATCTTGGAGAGGATTAAAGATTCTATTTTTTTTTCATTCTTGATTTGGGGTTTTTCAGTTATCAAGATTGATAAGATTCAATCTTGGTTGAGGGTAACTGAAGAAGAGGGTTCAAAAACATTTTTTTTCCATTCTTGATTTGGGGTTTTTAGTAACCAAGTAAAAGAAATGGCAATCACTGATGAGAACAAACATCCCTTGATTAAGGAATCTTCTGTTCGAGGTATAAAATCCTGTTTTTTTTTTTAATGTATAAAGTTGCTAATTTGTGATAAATGAGTTTTTGATTTTTTTTTCTCTTGTCATTGTGAAGTGAAAGATAGGGCTGAAATGGCTACCAGAAAGGTTGTTGGAGTGGAAACAAGAAGCAACCGAAGGGTTTTGGGCGCGATTAATCAGAATCTAGTGGGTGGTCAGGGGTATCCTTGTGTTGTTAACAAGAGAGGATTATCTGAGTAATTAATCTTCATCTATAATCTTTTAGATTAGAATCTTTGACCATTTGTTGAGTCTTTACCATTTTTTGTCACTAGTTCTTTAGCTCATTTTGCTGTTCCTTTTCAGTGGAAATGGATTCTGTGACAAGAATCTTCCTGTTCATGGTCATCGACCCATCACGAGGTTAGACATTAAAAAATATTAGAATGTTGGTCAATCTTTGTTTTTTGCCCCACTCGTGGGATTACATTGAGTAGGTTGTTGTTGTTCGATCTTTGTTTTGCTGATTTTGAATTTGCATTTGATGTTCAATAACCTGATACTTGTAAAACTTAATTTGTCAATGAAGGAAATATGCAGCACAAATTGCTAGCTCCCAGAAACACAGCTCAGAGGTACAAGCTTTTAATGAATTGGAGTGTATCTTTGTTGATCACTCTGATATATAGTTTATAAAGTTTAATAAATAACTCTGGGAGATTAATAATTTTCGATTTCTTTGAACAGGAAAACAAGAAACCTAAGATAGCAGCTGAAAGTTTCAGCGTCTGGGAGGATGATATGGAGGCAGCTAATGATAAGCCTGTCCCTATGTCTTTGGAGCAAACAGAAAAAGTGTCAAAGGGCAAGGATCAAATGGTAACAAAAACAATCCTGTCTTTAAACTTTCATTAATTAATACTAGTATATTAATGTATATGTTTTTAATTAATGAGCTGATCATTAAAGACATACATTCAGGAGGTTGAAATGGAGGATATCTTTGAGGAGGCTGTAATAGATATCGACGGTGATGATGCAAAGAACCATCTTGCAGCTGTTGAATATGTGGGAGATTTGTTTGCTAACTACAGAACAATGGAGGTTAGTTTAGCTCAGTAACTTACTAGTTAACAGTTGCATAGATCCTTAATTCGTAAGATTAACTGCTTAATTAAATCTTTATAGCTTTGTCTGATGTGATACATTTGAATCTCCACTGACTTTTAAAATCATTAGTTAGATCCTGACATATTACACCTTTTTACATTGTTTATACAACTTTACTTGGATAGATCCTATAGTTGTTTTTATTTATTTCAAATCGTAGCATCTATATTTATGAGTTGAATTTCATCATTGTATGTGTTTGGGAATGATTAAATCATTGTCCATTATATTCAGGTTAATAGCTGTGCTTCTCCATACTATATGGCACAACAGGCTGACATCAATGAGAGAATGCGGTCTATCTTGATTGACTGGCTAATTGAGGTATAGTAAATATTCCCTCTGCTAAGTTGATAAATTTCTTCAAAGTATAGTAATTAATGTATGCTCATTCTGATCAACAGGTGCATCACAAGTTTGAGCTCAGGGAAGAGACGTTGTTCCTGACCGTCAATTTGATTGACCGGTTCTTGGAGAAGCAAGGCATTGTCAGAAAGAAGCTCCAGCTTGTTGGATTGGTTGCAATGCTACTAGCATGCAAGTATGAGGAGGTTTGTGCTCCACTGGTGGAGGATCTGGTGTTGATTTCGGACAAAGCCTATACAAGGAAGGAGGTTCTTGAAATGGTAAATTCTGGTCTCCTAATAGCTGTAATTAGTAAACTTTGGTCTACATTTAGTATATAACTGAAGGCGTTTTTTTTCCATATCATGCAGGAAAGCATGATGCTCAACACACTGCAGTTTAATATGTCTGTCCCAACTGCATACGTTTTTATGCGAAGATATCTCAAGGCTGCTCAATGTGACAGGAAGGTTAGTAGCTGATAGTTCTGAATGTACTTTACTTGTTTTTACATGTACCAAACACATTATTGATATTTCTCTAACTTCTACTCATGGCTTTAAACAGCTTGAGCTGCTGTCCTTCATGTTGGTTGAGCTTTGCCTTGTGGAGTATGAAATGCTCAAATTTCCACCATCCTTCATAGCTGCTGCAGCAATCTATACAGCTCAGACCACACTCTACGGTGTCCAGCAGTGGAGCAAGACGTGCGAGGTGCACACAACGTACTCAGAAGATCAACTTCTGTAAGTCTACAAACTCAAACACACCTTGCTCTTCTTATTTAGTTACTTATTTCCCTTCTTTTTCTTGCTGTGTTAAGGGAGTGCTCGAGATCAATTGTTGGCTACCACCAGAAGGCAGCAACAGGGAAACTAACAGGGGTACATAGGAAATACAGCATATCGAAATTTGGGTATGCAGCCAAGTGTGAGCCTGCCCATTTTCTTGTGCAGCAGACACAAGAATAGAGGAGAAGAGGGGCATGTACAGTTATTACTAACTTTATATGCAAATTGGGGATATATTTGTGGGGTGATGGAGAATTTATAGGAAAAGATAACTTAGCAACTAATGGTTGCCCCGGGGGATTTCATTATTTCTTTTTATAGAGTTCATTATTATTGCACTTTTACTATGTTCAACATTTGAACATCCCTGAATTTATTGTTTCAGTTACAGTTTTTCATTTACAAACAGAAATAAAAAGTCACAATTTTCTCAGAGTGGTTTTGCTTTATTGAAGTTGGTTATTTATTGAATGTTTTTTTTGTGCTCTCTTGATTATTTTTTTTTCATTACTATTGTGACGGAGGAGAGGTAAGTACTCCTCCTTCATCCTTGACCAAAGGCATCGGGTTAGACTCTCTATGCCTTTATTAGGAAGTGCTAGCTACCCTTCAGACTTTCCGGTATGAATTCGGATTTAGTTTGGATATCGAACGACTTCAGGTGAAAACCAAAAAAGACCAGGAATTGCTGGTTCATAAGGGCGCGTCCATTTGTGGGCTGTGCGCTGTCAAATGAGAAAAATAAATGCTCGGAGCAGCAACTAAATTCGGATAACCATTAGGGAATAACGCTCATAATATAATTTTCTTCATATTTAAAGTTTGAATTCAAAATTTTTGATTAAAAGGTGAAATAGTTCTGCCCACTACACCTCTCAGGTAGTACAAATGTTAAAAGCACCTATCAATTGCCTGATTCGCATCTCCCTCCATTCCATTTTCTGGCCATAAACTTTTTTTTTTTTAATTCTCTACGATTTCATTTATACTTAGCTTCATTTTGTATTTAATTGTTCAATCTAACAAAATGACTTTATTATTTTTCCTCATTCGTCACTTAAATAAAGTTAGTTTAATAAAAGTTTTAGTATTAATATACTGCTCCTTGACACCAAGATTATACTTGACACCATTCACCAATTATAAACTAAATTATTATTGTTTTAGTTTAAGAAAGCACCTAGCGTGGAATAATAATTTTGAAATAAAATAATAAAAATATCCTTATTTTCTCTTATAGTTCTTTTAAAAATATATATATTAAAATTGAAATTATTTTTTTATTCAAATTGATCTAGTGTAAAAAAATCCCATGTCATATATTATGAGCCTGTTTGGCTCAGCTTAAAAGCTGGTCAAACTGACTTAAAAGCTGGTTTTTGACTTATTTAGCTGTTTGGCAATACTCAAAACAGCTTATTTTAAGTTAAAAAAAATTATTTTAAGCAAAAAGTTAAAAGCTGGGGTAGGGGTGTTTTTTTTTTTTTTAGCTTATAAGCTGTTTTAAGTTGACCACATTTTTATCTTTTTGTGCTTAATATTTTTATACAATCTCCAAATTACCCATATAACCCTAACATTTCTTTCTCCCATTTTTCCCTTTTCACGTTTGAAATAACAACTTCAGCACTTTTATCCAAACGCATAACTGCTTATTTTAAAAATAAGTTTCAGCACTTTTAAAAGTACTTTTTTAAAGCTGTTTTTATTAAGCCCATCCAAACGGGCCCATATCCTGTATAGCCAAAAAGATATAATTTGTTTCATAACTCTCGGTACATTTGACCTAATATGCCAAATACATGGACACCAAACACATTTTCTTGTCATAATGCAAAATCATACTTCATAGTAATTTTTTCGTATAATCAATTAGTACATACAACATATTAACACATAATTTAGATTGCATTCACGTAATAAAGAAGTGTTCACTGAAAATTGGTCCCTACTTTTGTCACCAACCTCACTAATAAGACTTTTTAGTTCCACCTACTTTTTGCCAAATCGCTCGTAATATAATAGTGAGATTTGTTGCATCATTAATCATAAATTTTATATTTTAGTTTCGAAAAATAATCTATTACACATTTGTTGTTATACTCTCTTTGTTCCATATTATTTATTACATTACTAAAAAAGTTTTTTCCTAAATATTTATCGATTGACAAAATTAAAATAGAATAAATAATGTTTTCCTCTTTTTATTGTTAAATTACTTTTAAAAAAATATAAATATTAGATACAAATTTCCAAAAAAACTAATGAAAAAGTGAATAAGTAAATGACATTGGGTTTATGTGTTTGTGGTGGGGTGGGGGGTTAGAACAAAAAAGCACTTTTGTTACTAATCCAAAATGCGCTTATTCCCAACATTTGGACAGGCTATAAATAAGGAGTAATTTCTCACTAATGTTTGAGAAATAATTTAGGAATATCATGTTTGTCTTAAAATTATAATATTACTCAACTTTGTATATTTCTTTCAAAATATATTTGACAAAAAAAAACA</genome_strand>
        <mrna_strand>GCACG-AGTTTTAACCAGATACATTCCCATTTTTTTCTTACATTCTCCATCTTTTTCTCCCCCTTTCCATTTGTTCAACTTTTTTCAGAACTCTCTTGTTTCTTCATTGGTTCTTAATCAAGATTGATCAAGATTCAATCTTGGTAGAGGGTAACTGAAGAAGAGAGTGAAAGATTCAATTTTTTTTCCATTCTTGATTTAGGTTTTTTTCTGTAATCAAGATTCAATCTTGGAGAGGATTAAAGATTCTATTTTTTTTTCATTCTTGATTTGGGGTTTTTCAGTTATCAAGATTGATAAGATTCAATCTTGGTTGAGGGTAACTGAAGAAGAGGGTTCAAAAACATTTTTTTTCCATTCTTGATTTGGGGTTTTTAGTAACCAAGTAAAAGAAATGGCAATCACTGATGAGAACAAACATCCCTTGATTAAGGAATCTTCTGTTCGAG..........................................................................................TGAAAGATAGGGCTGAAATGGCTACCAGAAAGGTTGTTGGAGTGGAAACAAGAAGCAACCGAAGGGTTTTGGGCGCGATTAATCAGAATCTAGTGGGTGGTCAGGGGTATCCTTGTGTTGTTAACAAGAGAGGATTATCTGA.............................................................................................................TGGAAATGGATTCTGTGACAAGAATCTTCCTGTTCATGGTCATCGACCAATCACGAG......................................................................................................................................................................GAAATATGCAGCACAAATTGCTAGCTCCCAGAAACACAGCTCAGAG................................................................................................................GAAAACAAGAAACCTAAGATAGCAGCTGAAAGTTTCAGCGTCTGGGAGGATGATATGGAGGCAGCTAATGATAAGCCTGTCCCTATGTCTTTGGAGCAAACAGAAAAAGTGTCAAAGGGCAAGGATCAAATG..........................................................................................ACATACATTCAGGAGGTTGAAATGGAGGATATCTTTGAGGAGGCTGTAATAGATATCGACGGTGATGATGCAAAGAACCATCTTGCAGCTGTTGAATATGTGGGAGATTTGTTTGCTAACTACAGAACAATGGAG............................................................................................................................................................................................................................................................................................................GTTAATAGCTGTGCTTCTCCATACTATATGGCACAACAGGCTGACATCAATGAGAGAATGCGGTCTATCTTGATTGACTGGCTAATTGAG................................................................................GTGCATCACAAGTTTGAGCTCAGGGAAGAGACGTTGTTCCTGACCGTCAATTTGATTGACCGGTTCTTGGAGAAGCAAGGCATTGTCAGAAAGAAGCTCCAGCTTGTTGGATTGGTTGCAATGCTACTAGCATGCAAGTATGAGGAGGTTTGTGCTCCACTGGTGGAGGATCTGGTGTTGATTTCGGACAAAGCCTATACAAGGAAGGAGGTTCTTGAAATG..........................................................................................GAAAGCATGATGCTCAACACACTGCAGTTTAATATGTCTGTCCCAACTGCATACGTTTTTATGCGAAGATATCTCAAGGCTGCTCAATGTGACAGGAAG.................................................................................................CTTGAGCTGCTGTCCTTCATGTTGGTTGAGCTTTGCCTTGTGGAGTATGAAATGCTCAAATTTCCACCATCCTTCATAGCTGCTGCAGCAATCTATACAGCTCAGACCACACTCTACGGTGTCCAGCAGTGGAGCAAGACGTGCGAGGTGCACACAACGTACTCAGAAGATCAACTTCT.............................................................................GGAGTGCTCGAGATCAATTGTTGGCTACCACCAGAAGGCAGCAACAGGGAAACTAACAGGGGTACATAGGAAATACAGCATATCGAAATTTGGGTATGCAGCCAAGTGTGAGCCTGCCCATTTTCTTGTGCAGCAGACACAAGAATAGAGGAGAAGAGGGGCATGTACAGTTATTACTAACTTTATATGCAAATTGGGGATATATTTGTGGGGTGATGGAGAATTTATAGGAAAAGATAACTTAGCAACTAATGGTTGCCCCGGGGGATTTCATTATTTCTTTTTATAGAGTTCATTATTATTGCACTTTTACTATGTTCAACATTTGAACATCCCTGAATTTATTGTTTCAGTTACAGTTTTTCATTTACAAACAGAAATAAAAAGTCACAATTTTCTCAGAGTGGTTTTGCTTTATTGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E315282" ref_strand="+" ref_description="SGN-E315282 [cTOA-24-M8]">
      <seq>cattcccatttttttcttacattctccatctttttctccccctttccatttgttcaacttttttcagaactctcttgtttcttcattggttcttaatcaagattgatcaagattcaatcttggtagagggtaactgaagaagagagtgaaagattcaattttttttccattcttgatttaggtttttttctgtaatcaagattcaatcttggagaggattaaagattctatttttttttcattcttgatttggggtttttcagttatcaagattgataagattcaatcttggttgagggtaactgaagaagagggttcaaaaacattttttttccattcttgatttggggtttttagtaaccaagtaaaagaaatggcaatcactgatgagaacaaacatcccttgattaaggaatcttctgttcgagtgaaagatagggctgaaatggctaccagaaaggttgttggagtggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="14306" stop="15471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14606" g_stop="15033" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="428" r_length="428" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15034" i_stop="15123" i_length="90">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15124" g_stop="15171" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="476" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E315282" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315282" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14606" e_stop="15033"/>
          <exon e_start="15124" e_stop="15171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTCCCATTTTTTTCTTACATTCTCCATCTTTTTCTCCCCCTTTCCATTTGTTCAACTTTTTTCAGAACTCTCTTGTTTCTTCATTGGTTCTTAATCAAGATTGATCAAGATTCAATCTTGGTAGAGGGTAACTGAAGAAGAGAGTGAAAGATTCAATTTTTTTTCCATTCTTGATTTAGGTTTTTTTCTGTAATCAAGATTCAATCTTGGAGAGGATTAAAGATTCTATTTTTTTTTCATTCTTGATTTGGGGTTTTTCAGTTATCAAGATTGATAAGATTCAATCTTGGTTGAGGGTAACTGAAGAAGAGGGTTCAAAAACATTTTTTTTCCATTCTTGATTTGGGGTTTTTAGTAACCAAGTAAAAGAAATGGCAATCACTGATGAGAACAAACATCCCTTGATTAAGGAATCTTCTGTTCGAGGTATAAAATCCTGTTTTTTTTTTTAATGTATAAAGTTGCTAATTTGTGATAAATGAGTTTTTGATTTTTTTTTCTCTTGTCATTGTGAAGTGAAAGATAGGGCTGAAATGGCTACCAGAAAGGTTGTTGGAGTGGAAA</genome_strand>
        <mrna_strand>CATTCCCATTTTTTTCTTACATTCTCCATCTTTTTCTCCCCCTTTCCATTTGTTCAACTTTTTTCAGAACTCTCTTGTTTCTTCATTGGTTCTTAATCAAGATTGATCAAGATTCAATCTTGGTAGAGGGTAACTGAAGAAGAGAGTGAAAGATTCAATTTTTTTTCCATTCTTGATTTAGGTTTTTTTCTGTAATCAAGATTCAATCTTGGAGAGGATTAAAGATTCTATTTTTTTTTCATTCTTGATTTGGGGTTTTTCAGTTATCAAGATTGATAAGATTCAATCTTGGTTGAGGGTAACTGAAGAAGAGGGTTCAAAAACATTTTTTTTCCATTCTTGATTTGGGGTTTTTAGTAACCAAGTAAAAGAAATGGCAATCACTGATGAGAACAAACATCCCTTGATTAAGGAATCTTCTGTTCGAG..........................................................................................TGAAAGATAGGGCTGAAATGGCTACCAGAAAGGTTGTTGGAGTGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E402261" ref_strand="+" ref_description="SGN-E402261 [PPC-7-O21]">
      <seq>tgttgttggagtggaaacaagaagcaaccgaagggttttgggcgcgattaatcagaatttagtgggtggtcagggatatccttgtgttgttaacaagagaggattatctgatgaaaatggaatctgtgacaagaatcttcctgttcatggtcatcgacccatcacgaggaaatatgcagcacaaattgctagctcccagaaacacagttcagaggaaaacaagaaacctaagatagcagctgaaagtttcagtgtctgggaggatgatatggaggagaatgaggcagctaatgataagcctgtccctatgtctttggagcaaactgaaaaagtgtcaaagggcaaggatcaaatggaggttgaaatggaggatatctttgaagaggctgtaatagatatcgacggtgatgatgcaaagaaccatcttgcagctgttgaatatgtgggagatttgtttgctaactacagaacaatggaggtttatagctgtgcttctccaactatatggcacaacaggttgacatcaacga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="14856" stop="16765"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15155" g_stop="15265" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15266" i_stop="15374" i_length="109">
            <donor d_prob="0.962" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15375" g_stop="15431" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="168" r_length="57" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15432" i_stop="15597" i_length="166">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15598" g_stop="15643" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="214" r_length="46" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15644" i_stop="15755" i_length="112">
            <donor d_prob="0.969" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15756" g_stop="15887" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="355" r_length="141" r_score="0.848"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15888" i_stop="15989" i_length="102">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15990" g_stop="16112" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="478" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16113" i_stop="16412" i_length="300">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16413" g_stop="16465" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="530" r_length="52" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E402261" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E402261" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15155" e_stop="15265"/>
          <exon e_start="15375" e_stop="15431"/>
          <exon e_start="15598" e_stop="15643"/>
          <exon e_start="15756" e_stop="15887"/>
          <exon e_start="15990" e_stop="16112"/>
          <exon e_start="16413" e_stop="16465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGTTGGAGTGGAAACAAGAAGCAACCGAAGGGTTTTGGGCGCGATTAATCAGAATCTAGTGGGTGGTCAGGGGTATCCTTGTGTTGTTAACAAGAGAGGATTATCTGAGTAATTAATCTTCATCTATAATCTTTTAGATTAGAATCTTTGACCATTTGTTGAGTCTTTACCATTTTTTGTCACTAGTTCTTTAGCTCATTTTGCTGTTCCTTTTCAGTGGAAATGGATTCTGTGACAAGAATCTTCCTGTTCATGGTCATCGACCCATCACGAGGTTAGACATTAAAAAATATTAGAATGTTGGTCAATCTTTGTTTTTTGCCCCACTCGTGGGATTACATTGAGTAGGTTGTTGTTGTTCGATCTTTGTTTTGCTGATTTTGAATTTGCATTTGATGTTCAATAACCTGATACTTGTAAAACTTAATTTGTCAATGAAGGAAATATGCAGCACAAATTGCTAGCTCCCAGAAACACAGCTCAGAGGTACAAGCTTTTAATGAATTGGAGTGTATCTTTGTTGATCACTCTGATATATAGTTTATAAAGTTTAATAAATAACTCTGGGAGATTAATAATTTTCGATTTCTTTGAACAGGAAAACAAGAAACCTAAGATAGCAGCTGAAAGTTTCAGCGTCTGGGAGGATGATAT------G---GAGGCAGCTAATGATAAGCCTGTCCCTATGTCTTTGGAGCAAACAGAAAAAGTGTCAAAGGGCAAGGATCAAATGGTAACAAAAACAATCCTGTCTTTAAACTTTCATTAATTAATACTAGTATATTAATGTATATGTTTTTAATTAATGAGCTGATCATTAAAGACATACATTCAGGAGGTTGAAATGGAGGATATCTTTGAGGAGGCTGTAATAGATATCGACGGTGATGATGCAAAGAACCATCTTGCAGCTGTTGAATATGTGGGAGATTTGTTTGCTAACTACAGAACAATGGAGGTTAGTTTAGCTCAGTAACTTACTAGTTAACAGTTGCATAGATCCTTAATTCGTAAGATTAACTGCTTAATTAAATCTTTATAGCTTTGTCTGATGTGATACATTTGAATCTCCACTGACTTTTAAAATCATTAGTTAGATCCTGACATATTACACCTTTTTACATTGTTTATACAACTTTACTTGGATAGATCCTATAGTTGTTTTTATTTATTTCAAATCGTAGCATCTATATTTATGAGTTGAATTTCATCATTGTATGTGTTTGGGAATGATTAAATCATTGTCCATTATATTCAGGTTAATAGCTGTGCTTCTCCATACTATATGGCACAACAGGCTGACATCAATGA</genome_strand>
        <mrna_strand>TGTTGTTGGAGTGGAAACAAGAAGCAACCGAAGGGTTTTGGGCGCGATTAATCAGAATTTAGTGGGTGGTCAGGGATATCCTTGTGTTGTTAACAAGAGAGGATTATCTGA.............................................................................................................TGAAAATGGAATCTGTGACAAGAATCTTCCTGTTCATGGTCATCGACCCATCACGAG......................................................................................................................................................................GAAATATGCAGCACAAATTGCTAGCTCCCAGAAACACAGTTCAGAG................................................................................................................GAAAACAAGAAACCTAAGATAGCAGCTGAAAGTTTCAGTGTCTGGGAGGATGATATGGAGGAGAATGAGGCAGCTAATGATAAGCCTGTCCCTATGTCTTTGGAGCAAACTGAAAAAGTGTCAAAGGGCAAGGATCAAATG......................................................................................................GAGGTTGAAATGGAGGATATCTTTGAAGAGGCTGTAATAGATATCGACGGTGATGATGCAAAGAACCATCTTGCAGCTGTTGAATATGTGGGAGATTTGTTTGCTAACTACAGAACAATGGAG............................................................................................................................................................................................................................................................................................................GTTTATAGCTGTGCTTCTCCA-ACTATATGGCACAACAGGTTGACATCAACGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E554398" ref_strand="+" ref_description="SGN-E554398 [cTSC-4-C7]">
      <seq>ggataacaagaaacctaagatagcagctgaaagtttcagcgtctgggaggatgatatggaggcagctaatgataagcctgtccctatgtctttggagcaaacagaaaaagtgtcaaagggcaaggatcaaatggtaacaaaaacaatcctgtctttaaactttcattaattaatactagtatattaatgtatatgtttttaattaatgagctgatcattaaagacatacattcaggaggttgaaatggaggatatctttgaggaggctgtaatagatatcgacggtgatgatgcaaagaaccatcttgcagctgttgaatatgtgggagatttgtttgctaactacagaacaatggaggttagtttagctcagtaacttactagttaacagttgcatagatccttaattcgtaagattaactgcttaattaaatctttatagctttgtctgatgtgatacatttgaatctccactgacttttaaaatcattagttagatcctgacatattacacctttttacattgtttatacaactttacttggatagatcctatagttgtttttatttatttcaaatcgtagcatctatatttatgagttgaatttcatcattgtatgtgtttgggaatgattaaatcattgtccattatattcaggttaatagctgtgcttctccatactatatggcacaacaggctgacatcaatgagagaatgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="15455" stop="16775"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15755" g_stop="16475" g_length="721"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="721" r_length="721" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E554398" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554398" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15755" e_stop="16475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAACAAGAAACCTAAGATAGCAGCTGAAAGTTTCAGCGTCTGGGAGGATGATATGGAGGCAGCTAATGATAAGCCTGTCCCTATGTCTTTGGAGCAAACAGAAAAAGTGTCAAAGGGCAAGGATCAAATGGTAACAAAAACAATCCTGTCTTTAAACTTTCATTAATTAATACTAGTATATTAATGTATATGTTTTTAATTAATGAGCTGATCATTAAAGACATACATTCAGGAGGTTGAAATGGAGGATATCTTTGAGGAGGCTGTAATAGATATCGACGGTGATGATGCAAAGAACCATCTTGCAGCTGTTGAATATGTGGGAGATTTGTTTGCTAACTACAGAACAATGGAGGTTAGTTTAGCTCAGTAACTTACTAGTTAACAGTTGCATAGATCCTTAATTCGTAAGATTAACTGCTTAATTAAATCTTTATAGCTTTGTCTGATGTGATACATTTGAATCTCCACTGACTTTTAAAATCATTAGTTAGATCCTGACATATTACACCTTTTTACATTGTTTATACAACTTTACTTGGATAGATCCTATAGTTGTTTTTATTTATTTCAAATCGTAGCATCTATATTTATGAGTTGAATTTCATCATTGTATGTGTTTGGGAATGATTAAATCATTGTCCATTATATTCAGGTTAATAGCTGTGCTTCTCCATACTATATGGCACAACAGGCTGACATCAATGAGAGAATGCGG</genome_strand>
        <mrna_strand>GGATAACAAGAAACCTAAGATAGCAGCTGAAAGTTTCAGCGTCTGGGAGGATGATATGGAGGCAGCTAATGATAAGCCTGTCCCTATGTCTTTGGAGCAAACAGAAAAAGTGTCAAAGGGCAAGGATCAAATGGTAACAAAAACAATCCTGTCTTTAAACTTTCATTAATTAATACTAGTATATTAATGTATATGTTTTTAATTAATGAGCTGATCATTAAAGACATACATTCAGGAGGTTGAAATGGAGGATATCTTTGAGGAGGCTGTAATAGATATCGACGGTGATGATGCAAAGAACCATCTTGCAGCTGTTGAATATGTGGGAGATTTGTTTGCTAACTACAGAACAATGGAGGTTAGTTTAGCTCAGTAACTTACTAGTTAACAGTTGCATAGATCCTTAATTCGTAAGATTAACTGCTTAATTAAATCTTTATAGCTTTGTCTGATGTGATACATTTGAATCTCCACTGACTTTTAAAATCATTAGTTAGATCCTGACATATTACACCTTTTTACATTGTTTATACAACTTTACTTGGATAGATCCTATAGTTGTTTTTATTTATTTCAAATCGTAGCATCTATATTTATGAGTTGAATTTCATCATTGTATGTGTTTGGGAATGATTAAATCATTGTCCATTATATTCAGGTTAATAGCTGTGCTTCTCCATACTATATGGCACAACAGGCTGACATCAATGAGAGAATGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E301303" ref_strand="+" ref_description="SGN-E301303 [cLEW-24-L8]">
      <seq>ctcgtgccgcttctctacacacagtttctaaagggaagaaaaaggcaaacaaacaatctgcggccatggctatgtcagctgccaccacccaatcgttcctccttaacaacaaaaccacccgccataactaccaaaccctcaaatccgccacccatatcgccaccttcccctccaccaccaccctaacctctacatacaaatctatgtctatttcctgctcagccgccgcctccacaactaccactcccctccaaacaccccctaccacctcatcagatcgggtcttcaacttcgctgccggacccgccacgctcccggaaaatgtcctacaaaagcccaagccgacctcgttaactggcggggctccggcatgtccgttatggaaatgagccaccgtggaaaagaattcctttccattattcaaaaagcagaatcagatctgagaacccttcttaatatctctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="21840" stop="22897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22130" g_stop="22597" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="466" r_length="466" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E301303" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22130" e_stop="22597"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGCCCAACCTTCTCTACACACAGTTTCTAAAGGGAAGAAAAAGGCAAACAAACAATCTGCGGCCATGGCTATGTCAGCTGCCACCACCCAATCGTTCCTCCTTAACAACAAAACCACCCGCCATAACTACCAAACCCTCAAATCCGCCACCCATATCGCCACCTTCCCCTCCACCACCACCCTAACCTCTACATACAAATCTATGTCTATTTCCTGCTCAGCCGCCGCCTCCACAACTACCACTCCCCTCCAAACACCCCCTACCACCTCATCAGATCGGGTCTTCAACTTCGCTGCCGGACCCGCCACGCTCCCGGAAAATGTCCTACAAAAAGCCCAAGCCGACCTCGTTAACTGGCGGGGCTCCGGCATGTCCGTTATGGAAATGAGCCACCGTGGAAAAGAATTCCTTTCCATTATTCAAAAAGCAGAATCAGATCTGAGAACCCTTCTTAATATCTCTGAT</genome_strand>
        <mrna_strand>CTCGTGC-CGCTTCTCTACACACAGTTTCTAAAGGGAAGAAAAAGGCAAACAAACAATCTGCGGCCATGGCTATGTCAGCTGCCACCACCCAATCGTTCCTCCTTAACAACAAAACCACCCGCCATAACTACCAAACCCTCAAATCCGCCACCCATATCGCCACCTTCCCCTCCACCACCACCCTAACCTCTACATACAAATCTATGTCTATTTCCTGCTCAGCCGCCGCCTCCACAACTACCACTCCCCTCCAAACACCCCCTACCACCTCATCAGATCGGGTCTTCAACTTCGCTGCCGGACCCGCCACGCTCCCGGAAAATGTCCTAC-AAAAGCCCAAGCCGACCTCGTTAACTGGCGGGGCTCCGGCATGTCCGTTATGGAAATGAGCCACCGTGGAAAAGAATTCCTTTCCATTATTCAAAAAGCAGAATCAGATCTGAGAACCCTTCTTAATATCTCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E547635" ref_strand="+" ref_description="SGN-E547635 [TUS-71-J22]">
      <seq>ttctctacacacacagtttctaaagggaagaaaaaggcaaacaaacaatctgcagccatggctatgtcagctgccaccacccaatcgttcctccttaacaacaaaaccacccgccataactaccaaaccctcaaatctgccacccatatcgccgccttcccctccacccatgtccaccccaccaccaccctaacctctacatacaaatctatgtccatttcctgctcagccgccgcctccacaactaccactcccctccaaacaccccctaccacctcatcagatcgggtcttcaacttcgctgccggacccgccactctcccggaaaatgtcctccaaaaagcccaagccgacctcgttaactggcggggctccggcatgtccgttatggaaatgagccaccgtggaaaagaattcctttccattattcaaaaagcagaatcagatctgagaacccttcttaatatctctgatgaatacgccgttcttttccttcaaggtggggccaccacccaattcgccgccattcctctcaacatctgctcaccggacgacgccgttgattacatcgtcaccggttcatggggtgacaaggcttacaaagaagcagctaaatacagcaaaccgaatgtcatttggagtggtaaatcggaaaaatacaccaagatcccgaattttgattcgttggtacaaaacccagatgccaagtatttgcatatatgcgccaatgaaactattcatggggttgaattcaaagattacccaacaccccttaacgagaaaaccattcttgttgctgatatgtcctcccaattctgttcaaaaccagtagatgtttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="21842" stop="23262"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22139" g_stop="22962" g_length="824"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="839" r_length="839" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E547635" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>824</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547635" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22139" e_stop="22962"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTCTCTACACACAGTTTCTAAAGGGAAGAAAAAGGCAAACAAACAATCTGCGGCCATGGCTATGTCAGCTGCCACCACCCAATCGTTCCTCCTTAACAACAAAACCACCCGCCATAACTACCAAACCCTCAAATCCGCCACCCATATCGCCACC-T----T-C-CCC---T-----CCACCACCACCCTAACCTCTACATACAAATCTATGTCTATTTCCTGCTCAGCCGCCGCCTCCACAACTACCACTCCCCTCCAAACACCCCCTACCACCTCATCAGATCGGGTCTTCAACTTCGCTGCCGGACCCGCCACGCTCCCGGAAAATGTCCTACAAAAAGCCCAAGCCGACCTCGTTAACTGGCGGGGCTCCGGCATGTCCGTTATGGAAATGAGCCACCGTGGAAAAGAATTCCTTTCCATTATTCAAAAAGCAGAATCAGATCTGAGAACCCTTCTTAATATCTCTGATGAATACGCCGTTCTTTTCCTTCAAGGTGGGGCCACCACCCAATTCGCCGCCATTCCTCTCAACATCTGCTCACCGGACGACGCCGTTGATTACATCGTCACCGGTTCATGGGGTGATAAGGCTTTCAAAGAAGCAGCTAAATACAGCAAACCGAATGTCATTTGGAGTGGTAAATCGGAAAAATACACCAAGATCCCGAATTTTGATTCGTTGGTACAAAACCCAGATGCCAAGTATTTGCATATATGCGCCAATGAAACTATTCATGGGGTTGAATTCAAAGATTACCCAACACCCCTTAACGAGAAAACCATTCTTGTTGCTGATATGTCCTCGAATTTCTGTTCAAAACCAGTAGATGTTTC</genome_strand>
        <mrna_strand>TTCTCTACACACACAGTTTCTAAAGGGAAGAAAAAGGCAAACAAACAATCTGCAGCCATGGCTATGTCAGCTGCCACCACCCAATCGTTCCTCCTTAACAACAAAACCACCCGCCATAACTACCAAACCCTCAAATCTGCCACCCATATCGCCGCCTTCCCCTCCACCCATGTCCACCCCACCACCACCCTAACCTCTACATACAAATCTATGTCCATTTCCTGCTCAGCCGCCGCCTCCACAACTACCACTCCCCTCCAAACACCCCCTACCACCTCATCAGATCGGGTCTTCAACTTCGCTGCCGGACCCGCCACTCTCCCGGAAAATGTCCTCCAAAAAGCCCAAGCCGACCTCGTTAACTGGCGGGGCTCCGGCATGTCCGTTATGGAAATGAGCCACCGTGGAAAAGAATTCCTTTCCATTATTCAAAAAGCAGAATCAGATCTGAGAACCCTTCTTAATATCTCTGATGAATACGCCGTTCTTTTCCTTCAAGGTGGGGCCACCACCCAATTCGCCGCCATTCCTCTCAACATCTGCTCACCGGACGACGCCGTTGATTACATCGTCACCGGTTCATGGGGTGACAAGGCTTACAAAGAAGCAGCTAAATACAGCAAACCGAATGTCATTTGGAGTGGTAAATCGGAAAAATACACCAAGATCCCGAATTTTGATTCGTTGGTACAAAACCCAGATGCCAAGTATTTGCATATATGCGCCAATGAAACTATTCATGGGGTTGAATTCAAAGATTACCCAACACCCCTTAACGAGAAAACCATTCTTGTTGCTGATATGTCCTCCCAATTCTGTTCAAAACCAGTAGATGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E560650" ref_strand="+" ref_description="SGN-E560650 [20336]">
      <seq>ctctcttcacacagagtctctaaagggaagaaaaaggcaaacacacaatctgcagccatggctatgtcagctgccaccacccaatctttcctccttaacaacaaaaccacccgccagaactaccaaaccctcaaatccgccacccatatcgccgccttcccctccacccatgtccacccaaccaccaccctaacctctacatacaaatctatgtccatttcctgctcagccgccgccaccacaaccaccacccccctccaaacacccccttccacctcttcagatcgggtcttcaacttcgctgccggacccgccaccctcccggaaaatgtcctccaaaaagcccaagccgacctcgttaactggcggggctccggcatgtccgttatggaaatgagccacgtggcaaagaattcctttccattattcaaaaagcagaatcagatctgagaacccttcttaatatctctgatgaatacgccgttcttttccttcaaggtggggccaccacccaattcgccgccattcctctcaacatctgctcaccggatgacgccgttgattacatcgtcaccggttcatggggtgacaaggcttacaaagaagcagctaaataccagcaaacccaatgtccatttggagtggcaaatcggaaaaaatacaccaagatcccgaattttgattcgttggtacaaaagccagatgccaagtatctgcatatatgcgccaattgaaactattcatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="21842" stop="23166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22139" g_stop="22866" g_length="728"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="746" r_length="746" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E560650" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E560650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22139" e_stop="22866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTCTCTACACACAGTTTCTAAAGGGAAGAAAAAGGCAAACAAACAATCTGCGGCCATGGCTATGTCAGCTGCCACCACCCAATCGTTCCTCCTTAACAACAAAACCACCCGCCATAACTACCAAACCCTCAAATCCGCCACCCATATCGCCACC-T----T-C-CCC---T----CC-ACCACCACCCTAACCTCTACATACAAATCTATGTCTATTTCCTGCTCAGCCGCCGCCTCCACAACTACCACTCCCCTCCAAACACCCCCTACCACCTCATCAGATCGGGTCTTCAACTTCGCTGCCGGACCCGCCACGCTCCCGGAAAATGTCCTACAAAAAGCCCAAGCCGACCTCGTTAACTGGCGGGGCTCCGGCATGTCCGTTATGGAAATGAGCCACCGTGGAAAAGAATTCCTTTCCATTATTCAAAAAGCAGAATCAGATCTGAGAACCCTTCTTAATATCTCTGATGAATACGCCGTTCTTTTCCTTCAAGGTGGGGCCACCACCCAATTCGCCGCCATTCCTCTCAACATCTGCTCACCGGACGACGCCGTTGATTACATCGTCACCGGTTCATGGGGTGATAAGGCTTTCAAAGAAGCAGCTAAATA-CAGCAAACCGAATGT-CATTTGGAGTGGTAAATCGG-AAAAATACACCAAGATCCCGAATTTTGATTCGTTGGTACAAAACCCAGATGCCAAGTATTTGCATATATGCGCCAA-TGAAACTATTCATGG</genome_strand>
        <mrna_strand>CTCTCTTCACACAGAGTCTCTAAAGGGAAGAAAAAGGCAAACACACAATCTGCAGCCATGGCTATGTCAGCTGCCACCACCCAATCTTTCCTCCTTAACAACAAAACCACCCGCCAGAACTACCAAACCCTCAAATCCGCCACCCATATCGCCGCCTTCCCCTCCACCCATGTCCACCCAACCACCACCCTAACCTCTACATACAAATCTATGTCCATTTCCTGCTCAGCCGCCGCCACCACAACCACCACCCCCCTCCAAACACCCCCTTCCACCTCTTCAGATCGGGTCTTCAACTTCGCTGCCGGACCCGCCACCCTCCCGGAAAATGTCCTCCAAAAAGCCCAAGCCGACCTCGTTAACTGGCGGGGCTCCGGCATGTCCGTTATGGAAATGAGCCA-CGTGGCAAAGAATTCCTTTCCATTATTCAAAAAGCAGAATCAGATCTGAGAACCCTTCTTAATATCTCTGATGAATACGCCGTTCTTTTCCTTCAAGGTGGGGCCACCACCCAATTCGCCGCCATTCCTCTCAACATCTGCTCACCGGATGACGCCGTTGATTACATCGTCACCGGTTCATGGGGTGACAAGGCTTACAAAGAAGCAGCTAAATACCAGCAAACCCAATGTCCATTTGGAGTGGCAAATCGGAAAAAATACACCAAGATCCCGAATTTTGATTCGTTGGTACAAAAGCCAGATGCCAAGTATCTGCATATATGCGCCAATTGAAACTATTCATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E456166" ref_strand="+" ref_description="SGN-E456166 [cSTS-28-B6]">
      <seq>tgctctctacaaaagtctctaaagtggataaaaaaggcaaacacacaatctgcagccatggctatgtcagctgccaccacccaatctttcctccttaacaacaaaaccacccgccagaactaccaaaccctcaaacccgccacccatatcgccaccttcccctccacccatgaccacccaaccgccaccctaacttccacatacaaatctatgtccatttcctgctcagccgccacctccacaactaccacccccctccaaacaccccctaccacctcatcagatcgggtcttcaacttcgctgccggacccgccaccctcccggaaaatgtcctccaaaaagcccaagccgacctcgttaactggcggggctccggcatgtccgttatggaaatgagccaccgtggtaaagaattcctttccattattcaaaaagcagaatcagatctgagaacccttcttaatatctctgatgaatacgccgttcttttccttcaaggtggggccaccacccaattcgctgccattcctctcaacatctgctcaccggatgacgccgttgattacatcgtcaccggttcatggggtgacaaggcttacaaagaagcagctaaatacagcaaacccaatgtcattttggagtggcaaatcggaaaaaacaccaagatcccaaattttgaattcgttggtacaaaacccagatgccaagtatttgcatatatgcgccaatgaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="21842" stop="23157"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22139" g_stop="22857" g_length="719"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="735" r_length="735" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E456166" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E456166" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22139" e_stop="22857"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTCTCTACACACAGTTTCTAAAG-GGAAGAAAAAGGCAAACAAACAATCTGCGGCCATGGCTATGTCAGCTGCCACCACCCAATCGTTCCTCCTTAACAACAAAACCACCCGCCATAACTACCAAACCCTCAAATCCGCCACCCATATCGCCACCTTCCCCTCCA-CC---ACCACCCTA-----A-CCT--C-T--ACATACAAATCTATGTCTATTTCCTGCTCAGCCGCCGCCTCCACAACTACCACTCCCCTCCAAACACCCCCTACCACCTCATCAGATCGGGTCTTCAACTTCGCTGCCGGACCCGCCACGCTCCCGGAAAATGTCCTACAAAAAGCCCAAGCCGACCTCGTTAACTGGCGGGGCTCCGGCATGTCCGTTATGGAAATGAGCCACCGTGGAAAAGAATTCCTTTCCATTATTCAAAAAGCAGAATCAGATCTGAGAACCCTTCTTAATATCTCTGATGAATACGCCGTTCTTTTCCTTCAAGGTGGGGCCACCACCCAATTCGCCGCCATTCCTCTCAACATCTGCTCACCGGACGACGCCGTTGATTACATCGTCACCGGTTCATGGGGTGATAAGGCTTTCAAAGAAGCAGCTAAATACAGCAAACCGAATGTCA-TTTGGAGTGGTAAATCGGAAAAATACACCAAGATCCCGAATTTTG-ATTCGTTGGTACAAAACCCAGATGCCAAGTATTTGCATATATGCGCCAATGAAAC</genome_strand>
        <mrna_strand>TGCTCTCTACA-AAAGTCTCTAAAGTGGATAAAAAAGGCAAACACACAATCTGCAGCCATGGCTATGTCAGCTGCCACCACCCAATCTTTCCTCCTTAACAACAAAACCACCCGCCAGAACTACCAAACCCTCAAACCCGCCACCCATATCGCCACCTTCCCCTCCACCCATGACCACCCAACCGCCACCCTAACTTCCACATACAAATCTATGTCCATTTCCTGCTCAGCCGCCACCTCCACAACTACCACCCCCCTCCAAACACCCCCTACCACCTCATCAGATCGGGTCTTCAACTTCGCTGCCGGACCCGCCACCCTCCCGGAAAATGTCCTCCAAAAAGCCCAAGCCGACCTCGTTAACTGGCGGGGCTCCGGCATGTCCGTTATGGAAATGAGCCACCGTGGTAAAGAATTCCTTTCCATTATTCAAAAAGCAGAATCAGATCTGAGAACCCTTCTTAATATCTCTGATGAATACGCCGTTCTTTTCCTTCAAGGTGGGGCCACCACCCAATTCGCTGCCATTCCTCTCAACATCTGCTCACCGGATGACGCCGTTGATTACATCGTCACCGGTTCATGGGGTGACAAGGCTTACAAAGAAGCAGCTAAATACAGCAAACCCAATGTCATTTTGGAGTGGCAAATCGGAAAAA-ACACCAAGATCCCAAATTTTGAATTCGTTGGTACAAAACCCAGATGCCAAGTATTTGCATATATGCGCCAATGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E706002" ref_strand="+" ref_description="SGN-E706002 [FA28CH11]">
      <seq>cttctctacacacagtttctaaagggaagaaaaaggcaaacaaacaatctgcggccatggctatgtcagctgccaccacccaatcgttcctccttaacaacaaaaccacccgccataactaccaaaccctcaaatccgccacccatatcgccaccttcccctccaccaccaccctaacctctacatacaaatctatgtctatttcctgctcagccgccgcctccacaactaccactcccctccaaacaccccctaccacctcatcagatcgggtcttcaacttcgctgccggacccgccacgctcccggaaaatgtcctacaaaaagcccaagccgacctcgttaactggcggggctccggcatgtccgttatggaaatgagccaccgtggaaaagaattcctttccattattcaaaaagcagaatcagatctgagaacccttcttaatatctctgatgaatacgccgttcttttccttcaaggtggggccaccacccaattcgccgccattcctctcaacatctgctcaccggacgacgccgttgattacatcgtcaccggttcatggggtgataaggctttcaaagaagcagctaaatacagcaaaccgaatgtcatttggagtggtaaatcggaaaaatacaccaagatcccgaattttgattcgttggtacaaaacccagatgccaagtatttgcatatatgcgccaatgaaactattcatggggttgaattcaaagattacccaacaccccttaacgagaaaaccattcttgttgctgatatgtcctcgaatttctgtttcaaaccagtagatgtttctaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="21840" stop="23268"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22140" g_stop="22968" g_length="829"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="829" r_length="829" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E706002" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>829</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22140" e_stop="22968"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCTACACACAGTTTCTAAAGGGAAGAAAAAGGCAAACAAACAATCTGCGGCCATGGCTATGTCAGCTGCCACCACCCAATCGTTCCTCCTTAACAACAAAACCACCCGCCATAACTACCAAACCCTCAAATCCGCCACCCATATCGCCACCTTCCCCTCCACCACCACCCTAACCTCTACATACAAATCTATGTCTATTTCCTGCTCAGCCGCCGCCTCCACAACTACCACTCCCCTCCAAACACCCCCTACCACCTCATCAGATCGGGTCTTCAACTTCGCTGCCGGACCCGCCACGCTCCCGGAAAATGTCCTACAAAAAGCCCAAGCCGACCTCGTTAACTGGCGGGGCTCCGGCATGTCCGTTATGGAAATGAGCCACCGTGGAAAAGAATTCCTTTCCATTATTCAAAAAGCAGAATCAGATCTGAGAACCCTTCTTAATATCTCTGATGAATACGCCGTTCTTTTCCTTCAAGGTGGGGCCACCACCCAATTCGCCGCCATTCCTCTCAACATCTGCTCACCGGACGACGCCGTTGATTACATCGTCACCGGTTCATGGGGTGATAAGGCTTTCAAAGAAGCAGCTAAATACAGCAAACCGAATGTCATTTGGAGTGGTAAATCGGAAAAATACACCAAGATCCCGAATTTTGATTCGTTGGTACAAAACCCAGATGCCAAGTATTTGCATATATGCGCCAATGAAACTATTCATGGGGTTGAATTCAAAGATTACCCAACACCCCTTAACGAGAAAACCATTCTTGTTGCTGATATGTCCTCGAATTTCTGTTCAAAACCAGTAGATGTTTCTAAATT</genome_strand>
        <mrna_strand>CTTCTCTACACACAGTTTCTAAAGGGAAGAAAAAGGCAAACAAACAATCTGCGGCCATGGCTATGTCAGCTGCCACCACCCAATCGTTCCTCCTTAACAACAAAACCACCCGCCATAACTACCAAACCCTCAAATCCGCCACCCATATCGCCACCTTCCCCTCCACCACCACCCTAACCTCTACATACAAATCTATGTCTATTTCCTGCTCAGCCGCCGCCTCCACAACTACCACTCCCCTCCAAACACCCCCTACCACCTCATCAGATCGGGTCTTCAACTTCGCTGCCGGACCCGCCACGCTCCCGGAAAATGTCCTACAAAAAGCCCAAGCCGACCTCGTTAACTGGCGGGGCTCCGGCATGTCCGTTATGGAAATGAGCCACCGTGGAAAAGAATTCCTTTCCATTATTCAAAAAGCAGAATCAGATCTGAGAACCCTTCTTAATATCTCTGATGAATACGCCGTTCTTTTCCTTCAAGGTGGGGCCACCACCCAATTCGCCGCCATTCCTCTCAACATCTGCTCACCGGACGACGCCGTTGATTACATCGTCACCGGTTCATGGGGTGATAAGGCTTTCAAAGAAGCAGCTAAATACAGCAAACCGAATGTCATTTGGAGTGGTAAATCGGAAAAATACACCAAGATCCCGAATTTTGATTCGTTGGTACAAAACCCAGATGCCAAGTATTTGCATATATGCGCCAATGAAACTATTCATGGGGTTGAATTCAAAGATTACCCAACACCCCTTAACGAGAAAACCATTCTTGTTGCTGATATGTCCTCGAATTTCTGTTTCAAACCAGTAGATGTTTCTAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E363950" ref_strand="+" ref_description="SGN-E363950 [cLPP-16-M11]">
      <seq>tctctacacacacagtttctaaagggaagaaaaaggcaaacaaacaatctgcagccatggctatgtcagctgccaccacccaatcgttcctccttaacaacaaaaccacccgccataactaccaaaccctcaaatctgccacccatatcgccgccttcccctccacccatgtccaccccaccaccaccctaacctctacatacaaatctatgtccatttcctgctcagccgccgcctccacaactaccactcccctccaaacaccccctaccacctcatcagatcgggtcttcaacttcgctgccggacccgccactctcccggaaaatgtcctccaaaaagcccaagccgacctcgttaactggcggggctccggcatgtccgttatggaaatgagccaccgtggaaaagaattcctttccattattcaaaaagcagaatcagatctgagaacccttcttaatatctctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="21842" stop="22897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22140" g_stop="22597" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="473" r_length="473" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E363950" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22140" e_stop="22597"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCTACACACAGTTTCTAAAGGGAAGAAAAAGGCAAACAAACAATCTGCGGCCATGGCTATGTCAGCTGCCACCACCCAATCGTTCCTCCTTAACAACAAAACCACCCGCCATAACTACCAAACCCTCAAATCCGCCACCCATATCGCCACC-T----T-C-CCC---T-----CCACCACCACCCTAACCTCTACATACAAATCTATGTCTATTTCCTGCTCAGCCGCCGCCTCCACAACTACCACTCCCCTCCAAACACCCCCTACCACCTCATCAGATCGGGTCTTCAACTTCGCTGCCGGACCCGCCACGCTCCCGGAAAATGTCCTACAAAAAGCCCAAGCCGACCTCGTTAACTGGCGGGGCTCCGGCATGTCCGTTATGGAAATGAGCCACCGTGGAAAAGAATTCCTTTCCATTATTCAAAAAGCAGAATCAGATCTGAGAACCCTTCTTAATATCTCTGAT</genome_strand>
        <mrna_strand>TCTCTACACACACAGTTTCTAAAGGGAAGAAAAAGGCAAACAAACAATCTGCAGCCATGGCTATGTCAGCTGCCACCACCCAATCGTTCCTCCTTAACAACAAAACCACCCGCCATAACTACCAAACCCTCAAATCTGCCACCCATATCGCCGCCTTCCCCTCCACCCATGTCCACCCCACCACCACCCTAACCTCTACATACAAATCTATGTCCATTTCCTGCTCAGCCGCCGCCTCCACAACTACCACTCCCCTCCAAACACCCCCTACCACCTCATCAGATCGGGTCTTCAACTTCGCTGCCGGACCCGCCACTCTCCCGGAAAATGTCCTCCAAAAAGCCCAAGCCGACCTCGTTAACTGGCGGGGCTCCGGCATGTCCGTTATGGAAATGAGCCACCGTGGAAAAGAATTCCTTTCCATTATTCAAAAAGCAGAATCAGATCTGAGAACCCTTCTTAATATCTCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E603822" ref_strand="+" ref_description="SGN-E603822 [67010]">
      <seq>tcacacagagtctctaaagggaagaaaaaggcaaacacacaatctgcagccatggctatgtcagctgccaccacccaatctttcctccttaacaacaaaaccacccgccagaactaccaaaccctcaaatccgccacccatatcgccgccttcccctccacccatgtccacccaaccaccaccctaacctctacatacaaatctatgtccatttcctgctcagccgccgccaccacaaccaccacccccctccaaacacccccttccacctcttcagatcgggtcttcaacttcgctgccggacccgccaccctcccggaaaatgtcctccaaaaagcccaagccgacctcgttaactggcggggctccggcatgtccgttatggaaatgagccaccgtggcaaagaattcctttccattattcaaaaagcagaatcagatctgagaacccttcttaatatctctgatgaatacgccgttcttttccttcaaggtggggccaccacccaattcgccgccattcctctcaacatctgctcaccggatgacgccgttgattacatcgtcaccggttcatggggtgacaaggcttacaaagaagcagctaaatacagcaaacccaatgtcatttggagtggcaaatcggaaaaatacaccaagatcccgaattttgattcgttggtacaaaacccagatgccaagtatttgcatatatgcgccaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="21847" stop="23153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22144" g_stop="22853" g_length="710"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="724" r_length="724" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E603822" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E603822" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22144" e_stop="22853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTACACACAGTTTCTAAAGGGAAGAAAAAGGCAAACAAACAATCTGCGGCCATGGCTATGTCAGCTGCCACCACCCAATCGTTCCTCCTTAACAACAAAACCACCCGCCATAACTACCAAACCCTCAAATCCGCCACCCATATCGCCACC-T----T-C-CCC---T----CC-ACCACCACCCTAACCTCTACATACAAATCTATGTCTATTTCCTGCTCAGCCGCCGCCTCCACAACTACCACTCCCCTCCAAACACCCCCTACCACCTCATCAGATCGGGTCTTCAACTTCGCTGCCGGACCCGCCACGCTCCCGGAAAATGTCCTACAAAAAGCCCAAGCCGACCTCGTTAACTGGCGGGGCTCCGGCATGTCCGTTATGGAAATGAGCCACCGTGGAAAAGAATTCCTTTCCATTATTCAAAAAGCAGAATCAGATCTGAGAACCCTTCTTAATATCTCTGATGAATACGCCGTTCTTTTCCTTCAAGGTGGGGCCACCACCCAATTCGCCGCCATTCCTCTCAACATCTGCTCACCGGACGACGCCGTTGATTACATCGTCACCGGTTCATGGGGTGATAAGGCTTTCAAAGAAGCAGCTAAATACAGCAAACCGAATGTCATTTGGAGTGGTAAATCGGAAAAATACACCAAGATCCCGAATTTTGATTCGTTGGTACAAAACCCAGATGCCAAGTATTTGCATATATGCGCCAATG</genome_strand>
        <mrna_strand>TC-ACACAGAGTCTCTAAAGGGAAGAAAAAGGCAAACACACAATCTGCAGCCATGGCTATGTCAGCTGCCACCACCCAATCTTTCCTCCTTAACAACAAAACCACCCGCCAGAACTACCAAACCCTCAAATCCGCCACCCATATCGCCGCCTTCCCCTCCACCCATGTCCACCCAACCACCACCCTAACCTCTACATACAAATCTATGTCCATTTCCTGCTCAGCCGCCGCCACCACAACCACCACCCCCCTCCAAACACCCCCTTCCACCTCTTCAGATCGGGTCTTCAACTTCGCTGCCGGACCCGCCACCCTCCCGGAAAATGTCCTCCAAAAAGCCCAAGCCGACCTCGTTAACTGGCGGGGCTCCGGCATGTCCGTTATGGAAATGAGCCACCGTGGCAAAGAATTCCTTTCCATTATTCAAAAAGCAGAATCAGATCTGAGAACCCTTCTTAATATCTCTGATGAATACGCCGTTCTTTTCCTTCAAGGTGGGGCCACCACCCAATTCGCCGCCATTCCTCTCAACATCTGCTCACCGGATGACGCCGTTGATTACATCGTCACCGGTTCATGGGGTGACAAGGCTTACAAAGAAGCAGCTAAATACAGCAAACCCAATGTCATTTGGAGTGGCAAATCGGAAAAATACACCAAGATCCCGAATTTTGATTCGTTGGTACAAAACCCAGATGCCAAGTATTTGCATATATGCGCCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E450772" ref_strand="+" ref_description="SGN-E450772 [cSTS-10-K6]">
      <seq>tacacacagtctctaaagggaaaaaaaaggcaaacacacaatctgcagccatggctatgtcagctgccaccacccaatctttcctccttaacaacaaaaccacccgccagaactaccaaaccctcaaacccgccacccatatcgccaccttcccctccacccatgaccacccaaccgccaccctaacttccacatacaaatctatgtccatttcctgctcagccgccacctccacaactaccacccccctccaaacaccccctaccacctcatcagatcgggtcttcaacttcgctgccggacccgccaccctcccggaaaatgtcctccaaaaagcccaagccgacctcgttaactggcggggctccggcatgtccgttatggaaatgagccaccgtggtaaagaattcctttccattattcaaaaagcagaatcagatctgagaacccttcttaatatctctgatgaatacgccgttcttttccttcaaggtggggccaccacccaattcgctgccattcctctcaacatctgctcaccggatgacgccgttgattacatcgtcaccggttcatggggtgacaaggcttacaaagaagcagctaaatacagcaaacccaatggtcatttggagtggcaaatcggaaaaatacaccaagatcccaaattttgattcgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="21846" stop="23110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22146" g_stop="22810" g_length="665"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="681" r_length="681" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E450772" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E450772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22146" e_stop="22810"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACACACAGTTTCTAAAGGGAAGAAAAAGGCAAACAAACAATCTGCGGCCATGGCTATGTCAGCTGCCACCACCCAATCGTTCCTCCTTAACAACAAAACCACCCGCCATAACTACCAAACCCTCAAATCCGCCACCCATATCGCCACCTTCCCCTCCA-CC---ACCACCCTA-----A-CCT--C-T--ACATACAAATCTATGTCTATTTCCTGCTCAGCCGCCGCCTCCACAACTACCACTCCCCTCCAAACACCCCCTACCACCTCATCAGATCGGGTCTTCAACTTCGCTGCCGGACCCGCCACGCTCCCGGAAAATGTCCTACAAAAAGCCCAAGCCGACCTCGTTAACTGGCGGGGCTCCGGCATGTCCGTTATGGAAATGAGCCACCGTGGAAAAGAATTCCTTTCCATTATTCAAAAAGCAGAATCAGATCTGAGAACCCTTCTTAATATCTCTGATGAATACGCCGTTCTTTTCCTTCAAGGTGGGGCCACCACCCAATTCGCCGCCATTCCTCTCAACATCTGCTCACCGGACGACGCCGTTGATTACATCGTCACCGGTTCATGGGGTGATAAGGCTTTCAAAGAAGCAGCTAAATACAGCAAACCGAAT-GTCATTTGGAGTGGTAAATCGGAAAAATACACCAAGATCCCGAATTTTGATTCGTTG</genome_strand>
        <mrna_strand>TACACACAGTCTCTAAAGGGAAAAAAAAGGCAAACACACAATCTGCAGCCATGGCTATGTCAGCTGCCACCACCCAATCTTTCCTCCTTAACAACAAAACCACCCGCCAGAACTACCAAACCCTCAAACCCGCCACCCATATCGCCACCTTCCCCTCCACCCATGACCACCCAACCGCCACCCTAACTTCCACATACAAATCTATGTCCATTTCCTGCTCAGCCGCCACCTCCACAACTACCACCCCCCTCCAAACACCCCCTACCACCTCATCAGATCGGGTCTTCAACTTCGCTGCCGGACCCGCCACCCTCCCGGAAAATGTCCTCCAAAAAGCCCAAGCCGACCTCGTTAACTGGCGGGGCTCCGGCATGTCCGTTATGGAAATGAGCCACCGTGGTAAAGAATTCCTTTCCATTATTCAAAAAGCAGAATCAGATCTGAGAACCCTTCTTAATATCTCTGATGAATACGCCGTTCTTTTCCTTCAAGGTGGGGCCACCACCCAATTCGCTGCCATTCCTCTCAACATCTGCTCACCGGATGACGCCGTTGATTACATCGTCACCGGTTCATGGGGTGACAAGGCTTACAAAGAAGCAGCTAAATACAGCAAACCCAATGGTCATTTGGAGTGGCAAATCGGAAAAATACACCAAGATCCCAAATTTTGATTCGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E485325" ref_strand="+" ref_description="SGN-E485325 [cSTE-17-D9]">
      <seq>cacacagtctctaaagggaaaaaaaaggcaaacacacaatctgcagccatggctatgtcagctgccaccacccaatctttcctccttaacaacaaaaccacccgccagaactaccaaaccctcaaacccgccaccctaacttccacatacaaatctatgtccatttcctgctcagccgccacctccacaactaccacccccctccaaacaccccctaccacctcatcagatcgggtcttcaacttcgctgccggacccgccaccctcccggaaaatgtcctccaaaaagcccaagccgacctcgttaactggcggggctccggcatgtccgttatggaaatgagccaccgtggtaaagaattcctttccattattcaaaaagcagaatcagatctgagaacccttcttaatatctctgatgaatacgccgttcttttccttcaaggtggggccaccacccaattcgctgccattcctctcaacatctgctcaccggatgacgccgttgattacatcgtcaccggttcatggggtgacaaggcttacaaagaagcagctaaatacagcaaacccaatgtcatttggagtggcaaatcggaaaaatacaccaagatcccaaattttgagttcgtggtacaaaacccagatgccaagtatttgcatatatgcgccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="21848" stop="23151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22148" g_stop="22851" g_length="704"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="674" r_length="674" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E485325" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="1.045" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E485325" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22148" e_stop="22851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACACAGTTTCTAAAGGGAAGAAAAAGGCAAACAAACAATCTGCGGCCATGGCTATGTCAGCTGCCACCACCCAATCGTTCCTCCTTAACAACAAAACCACCCGCCATAACTACCAAACCCTCAAATCCGCCACCCATATCGCCACCTTCCCCTCCACCACCACCCTAACCTCTACATACAAATCTATGTCTATTTCCTGCTCAGCCGCCGCCTCCACAACTACCACTCCCCTCCAAACACCCCCTACCACCTCATCAGATCGGGTCTTCAACTTCGCTGCCGGACCCGCCACGCTCCCGGAAAATGTCCTACAAAAAGCCCAAGCCGACCTCGTTAACTGGCGGGGCTCCGGCATGTCCGTTATGGAAATGAGCCACCGTGGAAAAGAATTCCTTTCCATTATTCAAAAAGCAGAATCAGATCTGAGAACCCTTCTTAATATCTCTGATGAATACGCCGTTCTTTTCCTTCAAGGTGGGGCCACCACCCAATTCGCCGCCATTCCTCTCAACATCTGCTCACCGGACGACGCCGTTGATTACATCGTCACCGGTTCATGGGGTGATAAGGCTTTCAAAGAAGCAGCTAAATACAGCAAACCGAATGTCATTTGGAGTGGTAAATCGGAAAAATACACCAAGATCCCGAATTTTGATTCGTTGGTACAAAACCCAGATGCCAAGTATTTGCATATATGCGCCAA</genome_strand>
        <mrna_strand>CACACAGTCTCTAAAGGGAAAAAAAAGGCAAACACACAATCTGCAGCCATGGCTATGTCAGCTGCCACCACCCAATCTTTCCTCCTTAACAACAAAACCACCCGCCAGAACTACCAAACCCTCAAACCCGCCACCC-TA-----A-C-T----T----------CC--A---C---ATACAAATCTATGTCCATTTCCTGCTCAGCCGCCACCTCCACAACTACCACCCCCCTCCAAACACCCCCTACCACCTCATCAGATCGGGTCTTCAACTTCGCTGCCGGACCCGCCACCCTCCCGGAAAATGTCCTCCAAAAAGCCCAAGCCGACCTCGTTAACTGGCGGGGCTCCGGCATGTCCGTTATGGAAATGAGCCACCGTGGTAAAGAATTCCTTTCCATTATTCAAAAAGCAGAATCAGATCTGAGAACCCTTCTTAATATCTCTGATGAATACGCCGTTCTTTTCCTTCAAGGTGGGGCCACCACCCAATTCGCTGCCATTCCTCTCAACATCTGCTCACCGGATGACGCCGTTGATTACATCGTCACCGGTTCATGGGGTGACAAGGCTTACAAAGAAGCAGCTAAATACAGCAAACCCAATGTCATTTGGAGTGGCAAATCGGAAAAATACACCAAGATCCCAAATTTTGAGTTCGTGGTACAAAACCCAGATGCCAAGTATTTGCATATATGCGCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E485324" ref_strand="+" ref_description="SGN-E485324 [cSTE-17-D7]">
      <seq>cacacagtctctaaagggaaaaaaaaggcaaacacacaatctgcagccatggctatgtcagctgccaccacccaatctttcctccttaacaacaaaaccacccgccagaactaccaaaccctcaaacccgccaccctaacttccacatacaaatctatgtccatttcctgctcagccgccacctccacaactaccacccccctccaaacaccccctaccacctcatcagatcgggtcttcaacttcgctgccggacccgccaccctcccggaaaatgtcctccaaaaagcccaagccgacctcgttaactggcggggctccggcatgtccgttatggaaatgagccaccgtggtaaagaattcctttccattattcaaaaagcagaatcagatctgagaacccttcttaatatctctgatgaatacgccgttcttttccttcaaggtggggccaccacccaattcgctgccattcctctcaacatctgctcaccggatgacgccgttgattacatcgtcaccggttcatggggtgacaaggcttacaaagaagcagctaaatacagcaaacccaatgtcatttggagtggcaaatcggaaaaaatacaccaagatcccaaattttgattcgttggtacaaaacccagatgccnagtatttgcatatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="21848" stop="23145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22148" g_stop="22845" g_length="698"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="669" r_length="669" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E485324" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.043" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E485324" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22148" e_stop="22845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACACAGTTTCTAAAGGGAAGAAAAAGGCAAACAAACAATCTGCGGCCATGGCTATGTCAGCTGCCACCACCCAATCGTTCCTCCTTAACAACAAAACCACCCGCCATAACTACCAAACCCTCAAATCCGCCACCCATATCGCCACCTTCCCCTCCACCACCACCCTAACCTCTACATACAAATCTATGTCTATTTCCTGCTCAGCCGCCGCCTCCACAACTACCACTCCCCTCCAAACACCCCCTACCACCTCATCAGATCGGGTCTTCAACTTCGCTGCCGGACCCGCCACGCTCCCGGAAAATGTCCTACAAAAAGCCCAAGCCGACCTCGTTAACTGGCGGGGCTCCGGCATGTCCGTTATGGAAATGAGCCACCGTGGAAAAGAATTCCTTTCCATTATTCAAAAAGCAGAATCAGATCTGAGAACCCTTCTTAATATCTCTGATGAATACGCCGTTCTTTTCCTTCAAGGTGGGGCCACCACCCAATTCGCCGCCATTCCTCTCAACATCTGCTCACCGGACGACGCCGTTGATTACATCGTCACCGGTTCATGGGGTGATAAGGCTTTCAAAGAAGCAGCTAAATACAGCAAACCGAATGTCATTTGGAGTGGTAAATCGG-AAAAATACACCAAGATCCCGAATTTTGATTCGTTGGTACAAAACCCAGATGCCAAGTATTTGCATATATG</genome_strand>
        <mrna_strand>CACACAGTCTCTAAAGGGAAAAAAAAGGCAAACACACAATCTGCAGCCATGGCTATGTCAGCTGCCACCACCCAATCTTTCCTCCTTAACAACAAAACCACCCGCCAGAACTACCAAACCCTCAAACCCGCCACCC-TA-----A-C-T----T----------CC--A---C---ATACAAATCTATGTCCATTTCCTGCTCAGCCGCCACCTCCACAACTACCACCCCCCTCCAAACACCCCCTACCACCTCATCAGATCGGGTCTTCAACTTCGCTGCCGGACCCGCCACCCTCCCGGAAAATGTCCTCCAAAAAGCCCAAGCCGACCTCGTTAACTGGCGGGGCTCCGGCATGTCCGTTATGGAAATGAGCCACCGTGGTAAAGAATTCCTTTCCATTATTCAAAAAGCAGAATCAGATCTGAGAACCCTTCTTAATATCTCTGATGAATACGCCGTTCTTTTCCTTCAAGGTGGGGCCACCACCCAATTCGCTGCCATTCCTCTCAACATCTGCTCACCGGATGACGCCGTTGATTACATCGTCACCGGTTCATGGGGTGACAAGGCTTACAAAGAAGCAGCTAAATACAGCAAACCCAATGTCATTTGGAGTGGCAAATCGGAAAAAATACACCAAGATCCCAAATTTTGATTCGTTGGTACAAAACCCAGATGCCNAGTATTTGCATATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E427148" ref_strand="+" ref_description="SGN-E427148 [STM-47-J16]">
      <seq>cacacagtctctaaagggaaaaaaaaggcaaacacacaatctgcagccatggctatgtcagctgccaccacccaatctttcctccttaacaacaaaaccacccgccagaactaccaaaccctcaaacccgccaccctaacttccacatacaaatctatgtccatttcctgctcagccgccacctccacaactaccacccccctccaaacaccccctaccacctcatcagatcgggtcttcaacttcgctgccggacccgccaccctcccggaaaatgtcctccaaaaagcccaagccgacctcgttaactggcggggctccggcatgtccgttatggaaatgagccaccgtggtaaagaattcctttccattattcaaaaagcagaatcagatctgagaacccttcttaatatctctgatgaatacgccgttcttttccttcaaggtggggccaccacccaattcgctgccattcctctcaacatctgctcaccgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="21848" stop="22973"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22148" g_stop="22673" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="496" r_length="496" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E427148" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.060" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E427148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22148" e_stop="22673"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACACAGTTTCTAAAGGGAAGAAAAAGGCAAACAAACAATCTGCGGCCATGGCTATGTCAGCTGCCACCACCCAATCGTTCCTCCTTAACAACAAAACCACCCGCCATAACTACCAAACCCTCAAATCCGCCACCCATATCGCCACCTTCCCCTCCACCACCACCCTAACCTCTACATACAAATCTATGTCTATTTCCTGCTCAGCCGCCGCCTCCACAACTACCACTCCCCTCCAAACACCCCCTACCACCTCATCAGATCGGGTCTTCAACTTCGCTGCCGGACCCGCCACGCTCCCGGAAAATGTCCTACAAAAAGCCCAAGCCGACCTCGTTAACTGGCGGGGCTCCGGCATGTCCGTTATGGAAATGAGCCACCGTGGAAAAGAATTCCTTTCCATTATTCAAAAAGCAGAATCAGATCTGAGAACCCTTCTTAATATCTCTGATGAATACGCCGTTCTTTTCCTTCAAGGTGGGGCCACCACCCAATTCGCCGCCATTCCTCTCAACATCTGCTCACCGG</genome_strand>
        <mrna_strand>CACACAGTCTCTAAAGGGAAAAAAAAGGCAAACACACAATCTGCAGCCATGGCTATGTCAGCTGCCACCACCCAATCTTTCCTCCTTAACAACAAAACCACCCGCCAGAACTACCAAACCCTCAAACCCGCCACCC-TA-----A-C-T----T----------CC--A---C---ATACAAATCTATGTCCATTTCCTGCTCAGCCGCCACCTCCACAACTACCACCCCCCTCCAAACACCCCCTACCACCTCATCAGATCGGGTCTTCAACTTCGCTGCCGGACCCGCCACCCTCCCGGAAAATGTCCTCCAAAAAGCCCAAGCCGACCTCGTTAACTGGCGGGGCTCCGGCATGTCCGTTATGGAAATGAGCCACCGTGGTAAAGAATTCCTTTCCATTATTCAAAAAGCAGAATCAGATCTGAGAACCCTTCTTAATATCTCTGATGAATACGCCGTTCTTTTCCTTCAAGGTGGGGCCACCACCCAATTCGCTGCCATTCCTCTCAACATCTGCTCACCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E731620" ref_strand="+" ref_description="SGN-E731620 [LA27CG02]">
      <seq>cctttttctaaagggaagaaaaaagcaaacaaacaatctgcggccatggctatgtcagctgccaccacccaatcgttcctccttaacaacaaaaccacccgccataactaccaaaccctcaaatccgccacccatatcgccaccttcccctccaccaccaccctaacctctacatacaaatctatgtctatttcctgctcagccgccgcctccacaactaccactcccctccaaacaccccctaccacctcatcagatcgggtcttcaacttcgctgccggacccgccacgctcccggaaaatgtcctacaaaaagcccaagccgacctcgttaactggcggggctccggcatgtccgttatggaaatgagccaccgtggaaaagaattcctttccattattcaaaaagcagaatcagatctgagaacccttcttaatatctctgatgaatacgccgttcttttccttcaaggtggggccaccacccaattcgccgccattcctctcaacatctgctcaccggacgacgccgttgattacatcgtcaccggttcatggggtgataaggctttcaaagaagcagctaaatacagcaaaccgaatgtcatttggagtggtaaatcggaaaaatacaccaagatcccgaattttgattcgttggtacaaaacccagatgccaagtatttgcatatatgcgccaatgaaactattcatggggttgaattcaaagattacccaacaccccttaacgagaaaaccattcttgttgctgatatgtcctcgaatttctgttcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="21855" stop="23247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22151" g_stop="22947" g_length="797"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="797" r_length="797" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E731620" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>797</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731620" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22151" e_stop="22947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGTTTCTAAAGGGAAGAAAAAGGCAAACAAACAATCTGCGGCCATGGCTATGTCAGCTGCCACCACCCAATCGTTCCTCCTTAACAACAAAACCACCCGCCATAACTACCAAACCCTCAAATCCGCCACCCATATCGCCACCTTCCCCTCCACCACCACCCTAACCTCTACATACAAATCTATGTCTATTTCCTGCTCAGCCGCCGCCTCCACAACTACCACTCCCCTCCAAACACCCCCTACCACCTCATCAGATCGGGTCTTCAACTTCGCTGCCGGACCCGCCACGCTCCCGGAAAATGTCCTACAAAAAGCCCAAGCCGACCTCGTTAACTGGCGGGGCTCCGGCATGTCCGTTATGGAAATGAGCCACCGTGGAAAAGAATTCCTTTCCATTATTCAAAAAGCAGAATCAGATCTGAGAACCCTTCTTAATATCTCTGATGAATACGCCGTTCTTTTCCTTCAAGGTGGGGCCACCACCCAATTCGCCGCCATTCCTCTCAACATCTGCTCACCGGACGACGCCGTTGATTACATCGTCACCGGTTCATGGGGTGATAAGGCTTTCAAAGAAGCAGCTAAATACAGCAAACCGAATGTCATTTGGAGTGGTAAATCGGAAAAATACACCAAGATCCCGAATTTTGATTCGTTGGTACAAAACCCAGATGCCAAGTATTTGCATATATGCGCCAATGAAACTATTCATGGGGTTGAATTCAAAGATTACCCAACACCCCTTAACGAGAAAACCATTCTTGTTGCTGATATGTCCTCGAATTTCTGTTCAAA</genome_strand>
        <mrna_strand>CCTTTTTCTAAAGGGAAGAAAAAAGCAAACAAACAATCTGCGGCCATGGCTATGTCAGCTGCCACCACCCAATCGTTCCTCCTTAACAACAAAACCACCCGCCATAACTACCAAACCCTCAAATCCGCCACCCATATCGCCACCTTCCCCTCCACCACCACCCTAACCTCTACATACAAATCTATGTCTATTTCCTGCTCAGCCGCCGCCTCCACAACTACCACTCCCCTCCAAACACCCCCTACCACCTCATCAGATCGGGTCTTCAACTTCGCTGCCGGACCCGCCACGCTCCCGGAAAATGTCCTACAAAAAGCCCAAGCCGACCTCGTTAACTGGCGGGGCTCCGGCATGTCCGTTATGGAAATGAGCCACCGTGGAAAAGAATTCCTTTCCATTATTCAAAAAGCAGAATCAGATCTGAGAACCCTTCTTAATATCTCTGATGAATACGCCGTTCTTTTCCTTCAAGGTGGGGCCACCACCCAATTCGCCGCCATTCCTCTCAACATCTGCTCACCGGACGACGCCGTTGATTACATCGTCACCGGTTCATGGGGTGATAAGGCTTTCAAAGAAGCAGCTAAATACAGCAAACCGAATGTCATTTGGAGTGGTAAATCGGAAAAATACACCAAGATCCCGAATTTTGATTCGTTGGTACAAAACCCAGATGCCAAGTATTTGCATATATGCGCCAATGAAACTATTCATGGGGTTGAATTCAAAGATTACCCAACACCCCTTAACGAGAAAACCATTCTTGTTGCTGATATGTCCTCGAATTTCTGTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E281019" ref_strand="+" ref_description="SGN-E281019 [cLER-7-N13]">
      <seq>acagtttctaaagggaagaaaaaggcaaacaaacaatctgcggccatggctatgtcagctgccaccacccaatcgttcctccttaacaacaaaaccacccgccataactaccaaaccctcaaatccgccacccatatcgccaccttcccctccaccaccaccctaacctctacatacaaatctatgtctatttcctgctcagccgccgcctccacaactaccactcccctccaaacaccccctaccacctcatcagatcgggtcttcaacttcgctgccggacccgccacgctcccggaaaatgtcctacaaaaagcccaagccgacctcgttaactggcggggctccggcatgtccgttatggaaatgagccaccgtggaaaagaattcctttccattattcaaaaagcagaatcagatctgagaacccttcttaatatctctgatgaatacgccgttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="21851" stop="22913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22151" g_stop="22613" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="463" r_length="463" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E281019" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281019" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22151" e_stop="22613"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGTTTCTAAAGGGAAGAAAAAGGCAAACAAACAATCTGCGGCCATGGCTATGTCAGCTGCCACCACCCAATCGTTCCTCCTTAACAACAAAACCACCCGCCATAACTACCAAACCCTCAAATCCGCCACCCATATCGCCACCTTCCCCTCCACCACCACCCTAACCTCTACATACAAATCTATGTCTATTTCCTGCTCAGCCGCCGCCTCCACAACTACCACTCCCCTCCAAACACCCCCTACCACCTCATCAGATCGGGTCTTCAACTTCGCTGCCGGACCCGCCACGCTCCCGGAAAATGTCCTACAAAAAGCCCAAGCCGACCTCGTTAACTGGCGGGGCTCCGGCATGTCCGTTATGGAAATGAGCCACCGTGGAAAAGAATTCCTTTCCATTATTCAAAAAGCAGAATCAGATCTGAGAACCCTTCTTAATATCTCTGATGAATACGCCGTTCTTT</genome_strand>
        <mrna_strand>ACAGTTTCTAAAGGGAAGAAAAAGGCAAACAAACAATCTGCGGCCATGGCTATGTCAGCTGCCACCACCCAATCGTTCCTCCTTAACAACAAAACCACCCGCCATAACTACCAAACCCTCAAATCCGCCACCCATATCGCCACCTTCCCCTCCACCACCACCCTAACCTCTACATACAAATCTATGTCTATTTCCTGCTCAGCCGCCGCCTCCACAACTACCACTCCCCTCCAAACACCCCCTACCACCTCATCAGATCGGGTCTTCAACTTCGCTGCCGGACCCGCCACGCTCCCGGAAAATGTCCTACAAAAAGCCCAAGCCGACCTCGTTAACTGGCGGGGCTCCGGCATGTCCGTTATGGAAATGAGCCACCGTGGAAAAGAATTCCTTTCCATTATTCAAAAAGCAGAATCAGATCTGAGAACCCTTCTTAATATCTCTGATGAATACGCCGTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E731701" ref_strand="+" ref_description="SGN-E731701 [LA27DG02]">
      <seq>cagtttctaaagggaagaaaaaggcaaacaaacaatctgcggccatggctatgtcagctgccaccacccaatcgttcctccttaacaacaaaaccacccgccataactaccaaaccctcaaatccgccacccatatcgccaccttcccctccaccaccaccctaacctctacatacaaatctatgtctatttcctgctcagccgccgcctccacaactaccactcccctccaaacaccccctaccacctcatcagatcgggtcttcaacttcgctgccggacccgccacgctcccggaaaatgtcctacaaaaagcccaagccgacctcgttaactggcggggctccggcatgtccgttatggaaatgagccaccgtggaaaagaattcctttccattattcaaaaagcagaatcagatctgagaacccttcttaatatctctgatgaatacgccgttcttttccttcaaggtggggccaccacccaattcgccgccattcctctcaacatctgctcaccggacgacgccgttgattacatcgtcaccggttcatggggtgataaggctttcaaagaagcagctaaatacagcaaaccgaatgtcatttggagtggtaaatcggaaaaatacaccaagatcccgaattttgattcgttggtacaaaacccagatgccaagtatttgcatatatgcgccaatgaaactattcatggggttgaattcaaagattacccaacaccccttaacgagaaaaccattcttgttgctgatatgtcctcgaatttctgttcaaaacagtagatgtttctaaatttggtatcatttacgctggtgcacagaaaaatgttgggcccatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="21852" stop="23311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22152" g_stop="23011" g_length="860"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="860" r_length="860" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E731701" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>860</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731701" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22152" e_stop="23011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTTTCTAAAGGGAAGAAAAAGGCAAACAAACAATCTGCGGCCATGGCTATGTCAGCTGCCACCACCCAATCGTTCCTCCTTAACAACAAAACCACCCGCCATAACTACCAAACCCTCAAATCCGCCACCCATATCGCCACCTTCCCCTCCACCACCACCCTAACCTCTACATACAAATCTATGTCTATTTCCTGCTCAGCCGCCGCCTCCACAACTACCACTCCCCTCCAAACACCCCCTACCACCTCATCAGATCGGGTCTTCAACTTCGCTGCCGGACCCGCCACGCTCCCGGAAAATGTCCTACAAAAAGCCCAAGCCGACCTCGTTAACTGGCGGGGCTCCGGCATGTCCGTTATGGAAATGAGCCACCGTGGAAAAGAATTCCTTTCCATTATTCAAAAAGCAGAATCAGATCTGAGAACCCTTCTTAATATCTCTGATGAATACGCCGTTCTTTTCCTTCAAGGTGGGGCCACCACCCAATTCGCCGCCATTCCTCTCAACATCTGCTCACCGGACGACGCCGTTGATTACATCGTCACCGGTTCATGGGGTGATAAGGCTTTCAAAGAAGCAGCTAAATACAGCAAACCGAATGTCATTTGGAGTGGTAAATCGGAAAAATACACCAAGATCCCGAATTTTGATTCGTTGGTACAAAACCCAGATGCCAAGTATTTGCATATATGCGCCAATGAAACTATTCATGGGGTTGAATTCAAAGATTACCCAACACCCCTTAACGAGAAAACCATTCTTGTTGCTGATATGTCCTCGAATTTCTGTTCAAAACCAGTAGATGTTTCTAAATTTGGTATCATTTACGCTGGTGCACAGAAAAATGTT-GGTCCATCT</genome_strand>
        <mrna_strand>CAGTTTCTAAAGGGAAGAAAAAGGCAAACAAACAATCTGCGGCCATGGCTATGTCAGCTGCCACCACCCAATCGTTCCTCCTTAACAACAAAACCACCCGCCATAACTACCAAACCCTCAAATCCGCCACCCATATCGCCACCTTCCCCTCCACCACCACCCTAACCTCTACATACAAATCTATGTCTATTTCCTGCTCAGCCGCCGCCTCCACAACTACCACTCCCCTCCAAACACCCCCTACCACCTCATCAGATCGGGTCTTCAACTTCGCTGCCGGACCCGCCACGCTCCCGGAAAATGTCCTACAAAAAGCCCAAGCCGACCTCGTTAACTGGCGGGGCTCCGGCATGTCCGTTATGGAAATGAGCCACCGTGGAAAAGAATTCCTTTCCATTATTCAAAAAGCAGAATCAGATCTGAGAACCCTTCTTAATATCTCTGATGAATACGCCGTTCTTTTCCTTCAAGGTGGGGCCACCACCCAATTCGCCGCCATTCCTCTCAACATCTGCTCACCGGACGACGCCGTTGATTACATCGTCACCGGTTCATGGGGTGATAAGGCTTTCAAAGAAGCAGCTAAATACAGCAAACCGAATGTCATTTGGAGTGGTAAATCGGAAAAATACACCAAGATCCCGAATTTTGATTCGTTGGTACAAAACCCAGATGCCAAGTATTTGCATATATGCGCCAATGAAACTATTCATGGGGTTGAATTCAAAGATTACCCAACACCCCTTAACGAGAAAACCATTCTTGTTGCTGATATGTCCTCGAATTTCTGTTCAAAA-CAGTAGATGTTTCTAAATTTGGTATCATTTACGCTGGTGCACAGAAAAATGTTGGGCCCATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E301586" ref_strand="+" ref_description="SGN-E301586 [cLEW-23-D18]">
      <seq>taaagggaagaaaaaggcaaacaaacaatctgcggccatggctatgtcagctgccaccacccaatcgttcctccttaacaacaaaaccacccgccataactaccaaaccctcaaatccgccacccatatcgccaccttcccctccaccaccaccgtaacctctacatacaaatctatgtctatttcctgctcagccgccgcctccacaactaccactcccctccaaacaccccctaccacctcatcagatcgggtcttcaacttcgctgccggacccgccacgctcccggaaaatgtcctacaaaaagcccaagccgacctcgttaactggcggggctccggcatgtccgttatggaaatgagccaccgtggaaaagaattcctttccattattcaaaaagcagaatcagatctgagaacccttcttaatatctctgatgaatacgccgttcttttccttcaaggtggggccaccacccaattcgccgccattcctctcaacatctgctcaccggacgacgccgttgattaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="21859" stop="22991"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22159" g_stop="22691" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E301586" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22159" e_stop="22691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGGGAAGAAAAAGGCAAACAAACAATCTGCGGCCATGGCTATGTCAGCTGCCACCACCCAATCGTTCCTCCTTAACAACAAAACCACCCGCCATAACTACCAAACCCTCAAATCCGCCACCCATATCGCCACCTTCCCCTCCACCACCACCCTAACCTCTACATACAAATCTATGTCTATTTCCTGCTCAGCCGCCGCCTCCACAACTACCACTCCCCTCCAAACACCCCCTACCACCTCATCAGATCGGGTCTTCAACTTCGCTGCCGGACCCGCCACGCTCCCGGAAAATGTCCTACAAAAAGCCCAAGCCGACCTCGTTAACTGGCGGGGCTCCGGCATGTCCGTTATGGAAATGAGCCACCGTGGAAAAGAATTCCTTTCCATTATTCAAAAAGCAGAATCAGATCTGAGAACCCTTCTTAATATCTCTGATGAATACGCCGTTCTTTTCCTTCAAGGTGGGGCCACCACCCAATTCGCCGCCATTCCTCTCAACATCTGCTCACCGGACGACGCCGTTGATTACA</genome_strand>
        <mrna_strand>TAAAGGGAAGAAAAAGGCAAACAAACAATCTGCGGCCATGGCTATGTCAGCTGCCACCACCCAATCGTTCCTCCTTAACAACAAAACCACCCGCCATAACTACCAAACCCTCAAATCCGCCACCCATATCGCCACCTTCCCCTCCACCACCACCGTAACCTCTACATACAAATCTATGTCTATTTCCTGCTCAGCCGCCGCCTCCACAACTACCACTCCCCTCCAAACACCCCCTACCACCTCATCAGATCGGGTCTTCAACTTCGCTGCCGGACCCGCCACGCTCCCGGAAAATGTCCTACAAAAAGCCCAAGCCGACCTCGTTAACTGGCGGGGCTCCGGCATGTCCGTTATGGAAATGAGCCACCGTGGAAAAGAATTCCTTTCCATTATTCAAAAAGCAGAATCAGATCTGAGAACCCTTCTTAATATCTCTGATGAATACGCCGTTCTTTTCCTTCAAGGTGGGGCCACCACCCAATTCGCCGCCATTCCTCTCAACATCTGCTCACCGGACGACGCCGTTGATTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E443733" ref_strand="+" ref_description="SGN-E443733 [cSTA-39-J13]">
      <seq>aaagggaagaaaaaggcaaacacacaatctgcagccatggctatgtcagctgccaccacccaatctttcctccttaacaacaaaaccacccgccagaactaccaaaccctcaaatccgccacccatatcgccgccttcccctccacccatgtccacccaaccaccaccctaacctctacatacaaatctatgtccatttcctgctcagccgccgccaccacaaccaccacccccctccaaacacccccttccacctcttcagatcgggtcttcaacttcgctgccggacccgccaccctcccggaaaatgtcctccaaaaagcccaagccgacctcgttaactggcggggctccggcatgtccgttatggaaatgagccaccgtggcaaagaattcctttccattattcaaaaagcagaatcagatctgagaacccttcttaatatctctgatgaatacgccgttcttttccttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="21860" stop="22920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22160" g_stop="22620" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E443733" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E443733" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22160" e_stop="22620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGGAAGAAAAAGGCAAACAAACAATCTGCGGCCATGGCTATGTCAGCTGCCACCACCCAATCGTTCCTCCTTAACAACAAAACCACCCGCCATAACTACCAAACCCTCAAATCCGCCACCCATATCGCCACC-T----T-C-CCC---T----CC-ACCACCACCCTAACCTCTACATACAAATCTATGTCTATTTCCTGCTCAGCCGCCGCCTCCACAACTACCACTCCCCTCCAAACACCCCCTACCACCTCATCAGATCGGGTCTTCAACTTCGCTGCCGGACCCGCCACGCTCCCGGAAAATGTCCTACAAAAAGCCCAAGCCGACCTCGTTAACTGGCGGGGCTCCGGCATGTCCGTTATGGAAATGAGCCACCGTGGAAAAGAATTCCTTTCCATTATTCAAAAAGCAGAATCAGATCTGAGAACCCTTCTTAATATCTCTGATGAATACGCCGTTCTTTTCCTTCA</genome_strand>
        <mrna_strand>AAAGGGAAGAAAAAGGCAAACACACAATCTGCAGCCATGGCTATGTCAGCTGCCACCACCCAATCTTTCCTCCTTAACAACAAAACCACCCGCCAGAACTACCAAACCCTCAAATCCGCCACCCATATCGCCGCCTTCCCCTCCACCCATGTCCACCCAACCACCACCCTAACCTCTACATACAAATCTATGTCCATTTCCTGCTCAGCCGCCGCCACCACAACCACCACCCCCCTCCAAACACCCCCTTCCACCTCTTCAGATCGGGTCTTCAACTTCGCTGCCGGACCCGCCACCCTCCCGGAAAATGTCCTCCAAAAAGCCCAAGCCGACCTCGTTAACTGGCGGGGCTCCGGCATGTCCGTTATGGAAATGAGCCACCGTGGCAAAGAATTCCTTTCCATTATTCAAAAAGCAGAATCAGATCTGAGAACCCTTCTTAATATCTCTGATGAATACGCCGTTCTTTTCCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E301588" ref_strand="+" ref_description="SGN-E301588 [cLEW-23-F14]">
      <seq>acaaacaatctgcggccatggctatgtgagctgccaccacccaatcgttcctccttaacaacaaaaccacccgccataactaccaaaccctcaaatccgccacccatatcgccaccttcccctccaccaccaccgtaacctctacatacaaatctatgtctatttcctgctcagccgccgcctccacaactaccactcccctacaaacaccccctaccacctcatcagatcgggtcttcaacttcgctgccggacccgccacgctcccggaaaatgtcctacaaaaagcccaagccgacctcgttaactggcggggctccagcatgtccgttatggaaatgagccaccgtggaaaagaattcctttgcattattcaaaaagcagaatcagatctgagaacccttcttaatatctctgatgaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="21879" stop="22902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22179" g_stop="22602" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="424" r_length="424" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E301588" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301588" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22179" e_stop="22602"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAACAATCTGCGGCCATGGCTATGTCAGCTGCCACCACCCAATCGTTCCTCCTTAACAACAAAACCACCCGCCATAACTACCAAACCCTCAAATCCGCCACCCATATCGCCACCTTCCCCTCCACCACCACCCTAACCTCTACATACAAATCTATGTCTATTTCCTGCTCAGCCGCCGCCTCCACAACTACCACTCCCCTCCAAACACCCCCTACCACCTCATCAGATCGGGTCTTCAACTTCGCTGCCGGACCCGCCACGCTCCCGGAAAATGTCCTACAAAAAGCCCAAGCCGACCTCGTTAACTGGCGGGGCTCCGGCATGTCCGTTATGGAAATGAGCCACCGTGGAAAAGAATTCCTTTCCATTATTCAAAAAGCAGAATCAGATCTGAGAACCCTTCTTAATATCTCTGATGAATA</genome_strand>
        <mrna_strand>ACAAACAATCTGCGGCCATGGCTATGTGAGCTGCCACCACCCAATCGTTCCTCCTTAACAACAAAACCACCCGCCATAACTACCAAACCCTCAAATCCGCCACCCATATCGCCACCTTCCCCTCCACCACCACCGTAACCTCTACATACAAATCTATGTCTATTTCCTGCTCAGCCGCCGCCTCCACAACTACCACTCCCCTACAAACACCCCCTACCACCTCATCAGATCGGGTCTTCAACTTCGCTGCCGGACCCGCCACGCTCCCGGAAAATGTCCTACAAAAAGCCCAAGCCGACCTCGTTAACTGGCGGGGCTCCAGCATGTCCGTTATGGAAATGAGCCACCGTGGAAAAGAATTCCTTTGCATTATTCAAAAAGCAGAATCAGATCTGAGAACCCTTCTTAATATCTCTGATGAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E348758" ref_strand="+" ref_description="SGN-E348758 [cTOF-29-O1]">
      <seq>tcaaatccgccacccatatcgccaccttcccctccaccaccaccctaacctctacatacaaatctatgtctatttcctgctcagccgccgcctccacaactaccactcccctccaaacaccccctaccacctcatcagatcgggtcttcaacttcgctgccggacccgccacgctcccggaaaatgtcctacaaaaagcccaagccgacctcgttaactggcggggctccggcatgtccgttatggaaatgagccaccgtggaaaagaattcctttccattattcaaaaagcagaatcagatctgagaacccttcttaatatctctgatgaatacgccgttcttttccttcaaggtggggccaccacccaattcgccgccattcctctcaacatctgctcaccggacgacgccgttgattacatcgtcaccggttcatggggtgataaggctttcaaagaagcagctaaatacagcaaaccgaatgtcatttggagtggtaaatcggaaaaaacaccaagatcccgaattttgattcgttggtacaaaacccagatgccaagtatttgcatatatgcgccaatgaaactattcatggggttgaattcaaagattacccaacaccccttaacgagaaaaccatttcttgttgctgatatgtcctcgaatttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="21969" stop="23240"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22269" g_stop="22940" g_length="672"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="672" r_length="672" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E348758" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22269" e_stop="22940"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATCCGCCACCCATATCGCCACCTTCCCCTCCACCACCACCCTAACCTCTACATACAAATCTATGTCTATTTCCTGCTCAGCCGCCGCCTCCACAACTACCACTCCCCTCCAAACACCCCCTACCACCTCATCAGATCGGGTCTTCAACTTCGCTGCCGGACCCGCCACGCTCCCGGAAAATGTCCTACAAAAAGCCCAAGCCGACCTCGTTAACTGGCGGGGCTCCGGCATGTCCGTTATGGAAATGAGCCACCGTGGAAAAGAATTCCTTTCCATTATTCAAAAAGCAGAATCAGATCTGAGAACCCTTCTTAATATCTCTGATGAATACGCCGTTCTTTTCCTTCAAGGTGGGGCCACCACCCAATTCGCCGCCATTCCTCTCAACATCTGCTCACCGGACGACGCCGTTGATTACATCGTCACCGGTTCATGGGGTGATAAGGCTTTCAAAGAAGCAGCTAAATACAGCAAACCGAATGTCATTTGGAGTGGTAAATCGGAAAAATACACCAAGATCCCGAATTTTGATTCGTTGGTACAAAACCCAGATGCCAAGTATTTGCATATATGCGCCAATGAAACTATTCATGGGGTTGAATTCAAAGATTACCCAACACCCCTTAACGAGAAAACCA-TTCTTGTTGCTGATATGTCCTCGAATTTCT</genome_strand>
        <mrna_strand>TCAAATCCGCCACCCATATCGCCACCTTCCCCTCCACCACCACCCTAACCTCTACATACAAATCTATGTCTATTTCCTGCTCAGCCGCCGCCTCCACAACTACCACTCCCCTCCAAACACCCCCTACCACCTCATCAGATCGGGTCTTCAACTTCGCTGCCGGACCCGCCACGCTCCCGGAAAATGTCCTACAAAAAGCCCAAGCCGACCTCGTTAACTGGCGGGGCTCCGGCATGTCCGTTATGGAAATGAGCCACCGTGGAAAAGAATTCCTTTCCATTATTCAAAAAGCAGAATCAGATCTGAGAACCCTTCTTAATATCTCTGATGAATACGCCGTTCTTTTCCTTCAAGGTGGGGCCACCACCCAATTCGCCGCCATTCCTCTCAACATCTGCTCACCGGACGACGCCGTTGATTACATCGTCACCGGTTCATGGGGTGATAAGGCTTTCAAAGAAGCAGCTAAATACAGCAAACCGAATGTCATTTGGAGTGGTAAATCGGAAAAA-ACACCAAGATCCCGAATTTTGATTCGTTGGTACAAAACCCAGATGCCAAGTATTTGCATATATGCGCCAATGAAACTATTCATGGGGTTGAATTCAAAGATTACCCAACACCCCTTAACGAGAAAACCATTTCTTGTTGCTGATATGTCCTCGAATTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E416963" ref_strand="+" ref_description="SGN-E416963 [STM-24-M13]">
      <seq>gtccaccccaccaccaccctaacctctacatacaaatctatgtccatttcctgctcagccgccgcctccacaactaccagccccctccaaacacccccttccacctcctcagatcgggtcttcaacttcgctgccggacccgccaccctcccggaaaatgtcctccaaaaagcccaagccgacctcgttaactggcggggctccggcatgtccgttatggaaatgagccaccgtggtaaagaattcctttccattattcagaaagcagaatcagatctgagaacccttcttaatatctctgatgaatacgccgttcttttccttcaaggtggggccaccacccaatttgccgccattcctctcaacatctgctcaccggatgacgccgttgattacatcgtcaccggttcatggggtgacaaggcttacaaagaagcagctaaatacagcaaacccaatgtcatttggagtggcaaatcggaaaaatacaccaagatcccaaattttgattcgttggtacaaaacccagatgccaagtatttgcatatatgcgccaatgaaactattcatgggggttgaattcaagaattacccaacaccccttaacgagaaaaccattcttgttgcggatatgtcctncattttctgttcaaaaccagtagatgtttctaaatttggtatcatttacgctggtgcacagaaaaatgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="21996" stop="23303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22295" g_stop="23003" g_length="709"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="710" r_length="710" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E416963" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E416963" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22295" e_stop="23003"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCCCTCCACCACCACCCTAACCTCTACATACAAATCTATGTCTATTTCCTGCTCAGCCGCCGCCTCCACAACTACCACTCCCCTCCAAACACCCCCTACCACCTCATCAGATCGGGTCTTCAACTTCGCTGCCGGACCCGCCACGCTCCCGGAAAATGTCCTACAAAAAGCCCAAGCCGACCTCGTTAACTGGCGGGGCTCCGGCATGTCCGTTATGGAAATGAGCCACCGTGGAAAAGAATTCCTTTCCATTATTCAAAAAGCAGAATCAGATCTGAGAACCCTTCTTAATATCTCTGATGAATACGCCGTTCTTTTCCTTCAAGGTGGGGCCACCACCCAATTCGCCGCCATTCCTCTCAACATCTGCTCACCGGACGACGCCGTTGATTACATCGTCACCGGTTCATGGGGTGATAAGGCTTTCAAAGAAGCAGCTAAATACAGCAAACCGAATGTCATTTGGAGTGGTAAATCGGAAAAATACACCAAGATCCCGAATTTTGATTCGTTGGTACAAAACCCAGATGCCAAGTATTTGCATATATGCGCCAATGAAACTATTCAT-GGGGTTGAATTCAAAGATTACCCAACACCCCTTAACGAGAAAACCATTCTTGTTGCTGATATGTCCTCGAATTTCTGTTCAAAACCAGTAGATGTTTCTAAATTTGGTATCATTTACGCTGGTGCACAGAAAAATGTTG</genome_strand>
        <mrna_strand>GTCCACCCCACCACCACCCTAACCTCTACATACAAATCTATGTCCATTTCCTGCTCAGCCGCCGCCTCCACAACTACCAGCCCCCTCCAAACACCCCCTTCCACCTCCTCAGATCGGGTCTTCAACTTCGCTGCCGGACCCGCCACCCTCCCGGAAAATGTCCTCCAAAAAGCCCAAGCCGACCTCGTTAACTGGCGGGGCTCCGGCATGTCCGTTATGGAAATGAGCCACCGTGGTAAAGAATTCCTTTCCATTATTCAGAAAGCAGAATCAGATCTGAGAACCCTTCTTAATATCTCTGATGAATACGCCGTTCTTTTCCTTCAAGGTGGGGCCACCACCCAATTTGCCGCCATTCCTCTCAACATCTGCTCACCGGATGACGCCGTTGATTACATCGTCACCGGTTCATGGGGTGACAAGGCTTACAAAGAAGCAGCTAAATACAGCAAACCCAATGTCATTTGGAGTGGCAAATCGGAAAAATACACCAAGATCCCAAATTTTGATTCGTTGGTACAAAACCCAGATGCCAAGTATTTGCATATATGCGCCAATGAAACTATTCATGGGGGTTGAATTCAAGAATTACCCAACACCCCTTAACGAGAAAACCATTCTTGTTGCGGATATGTCCTNCATTTTCTGTTCAAAACCAGTAGATGTTTCTAAATTTGGTATCATTTACGCTGGTGCACAGAAAAATGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E248458" ref_strand="+" ref_description="SGN-E248458 [cLEF-59-P5]">
      <seq>tccaccccaccaccaccctaacctctacatacaaatctatgtgcatttcgtgctcagccgccgcctccacaactaccagccccctccaaacacccccttccacctcctcagatcgggtcttcaacttcgctgccggacccgccaccctcccggaaaatgtcctccaaaaagcccaagccgacctcgttaactggcggggctccggcatgtccgttatggaaatgagccaccgtggtaaagaattcctttccattattcagaaagcagaatcagatctgagaacccttcttaatatctctgatgaatacgccgttcttttccttcaaggtggggccaccacccaatttgccgccattcctctcaacatctgctcaccggatgacgccgttgattacatcgtcaccggttcatggggtgacaaggcttacaaagaagcagctaaatacagcaaacccaatgtcatttggagtggcaaatcggaaaaatacaccaagatcccaaattttgattcgttggtacaaaacccagatgccaagtatttgcatatatgcgccaatgaaactattcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="21996" stop="23164"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22296" g_stop="22864" g_length="569"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="569" r_length="569" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E248458" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22296" e_stop="22864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCCTCCACCACCACCCTAACCTCTACATACAAATCTATGTCTATTTCCTGCTCAGCCGCCGCCTCCACAACTACCACTCCCCTCCAAACACCCCCTACCACCTCATCAGATCGGGTCTTCAACTTCGCTGCCGGACCCGCCACGCTCCCGGAAAATGTCCTACAAAAAGCCCAAGCCGACCTCGTTAACTGGCGGGGCTCCGGCATGTCCGTTATGGAAATGAGCCACCGTGGAAAAGAATTCCTTTCCATTATTCAAAAAGCAGAATCAGATCTGAGAACCCTTCTTAATATCTCTGATGAATACGCCGTTCTTTTCCTTCAAGGTGGGGCCACCACCCAATTCGCCGCCATTCCTCTCAACATCTGCTCACCGGACGACGCCGTTGATTACATCGTCACCGGTTCATGGGGTGATAAGGCTTTCAAAGAAGCAGCTAAATACAGCAAACCGAATGTCATTTGGAGTGGTAAATCGGAAAAATACACCAAGATCCCGAATTTTGATTCGTTGGTACAAAACCCAGATGCCAAGTATTTGCATATATGCGCCAATGAAACTATTCAT</genome_strand>
        <mrna_strand>TCCACCCCACCACCACCCTAACCTCTACATACAAATCTATGTGCATTTCGTGCTCAGCCGCCGCCTCCACAACTACCAGCCCCCTCCAAACACCCCCTTCCACCTCCTCAGATCGGGTCTTCAACTTCGCTGCCGGACCCGCCACCCTCCCGGAAAATGTCCTCCAAAAAGCCCAAGCCGACCTCGTTAACTGGCGGGGCTCCGGCATGTCCGTTATGGAAATGAGCCACCGTGGTAAAGAATTCCTTTCCATTATTCAGAAAGCAGAATCAGATCTGAGAACCCTTCTTAATATCTCTGATGAATACGCCGTTCTTTTCCTTCAAGGTGGGGCCACCACCCAATTTGCCGCCATTCCTCTCAACATCTGCTCACCGGATGACGCCGTTGATTACATCGTCACCGGTTCATGGGGTGACAAGGCTTACAAAGAAGCAGCTAAATACAGCAAACCCAATGTCATTTGGAGTGGCAAATCGGAAAAATACACCAAGATCCCAAATTTTGATTCGTTGGTACAAAACCCAGATGCCAAGTATTTGCATATATGCGCCAATGAAACTATTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E366459" ref_strand="+" ref_description="SGN-E366459 [cLPT-13-C3]">
      <seq>ccatatcgccgccttcccctccacccatgtgcaccccaccaccaccctaacctctacatacaaatctatgtccatttcctgctcagccgccgcctccacaactaccactcccctccaaacaccccctaccacctcatcagatcgggtcttcaacttcgctgccggacccgccactctcccggaaaatgtcctccaaaaagcccaagccgacctcgttaactggcggggctccggcatgtccgttatggaaatgagccaccgcggaaaagaattcctttccattattcaaaaagcagaatcagatctgagaacccttcttaatatctctgatgaatacgccgctcttttccttcaaggtggggccaccacccaattcgccgccattcctctcaacatctgctcaccggacgacgccgttgattacatcgtcaccggttcatggggtgacaaggcttacaaagaagcagctaaatacagcaaaccgaatgtcatttggagtggtaaatcggaaaaatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="21990" stop="23083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22302" g_stop="22783" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="517" r_length="482" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E366459" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366459" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22302" e_stop="22783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACCACCACCCTAACCTCTACATACAAATCTATGTCTATTTCCTGCTCAGCCGCCGCCTCCACAACTACCACTCCCCTCCAAACACCCCCTACCACCTCATCAGATCGGGTCTTCAACTTCGCTGCCGGACCCGCCACGCTCCCGGAAAATGTCCTACAAAAAGCCCAAGCCGACCTCGTTAACTGGCGGGGCTCCGGCATGTCCGTTATGGAAATGAGCCACCGTGGAAAAGAATTCCTTTCCATTATTCAAAAAGCAGAATCAGATCTGAGAACCCTTCTTAATATCTCTGATGAATACGCCGTTCTTTTCCTTCAAGGTGGGGCCACCACCCAATTCGCCGCCATTCCTCTCAACATCTGCTCACCGGACGACGCCGTTGATTACATCGTCACCGGTTCATGGGGTGATAAGGCTTTCAAAGAAGCAGCTAAATACAGCAAACCGAATGTCATTTGGAGTGGTAAATCGGAAAAATAC</genome_strand>
        <mrna_strand>CCACCACCACCCTAACCTCTACATACAAATCTATGTCCATTTCCTGCTCAGCCGCCGCCTCCACAACTACCACTCCCCTCCAAACACCCCCTACCACCTCATCAGATCGGGTCTTCAACTTCGCTGCCGGACCCGCCACTCTCCCGGAAAATGTCCTCCAAAAAGCCCAAGCCGACCTCGTTAACTGGCGGGGCTCCGGCATGTCCGTTATGGAAATGAGCCACCGCGGAAAAGAATTCCTTTCCATTATTCAAAAAGCAGAATCAGATCTGAGAACCCTTCTTAATATCTCTGATGAATACGCCGCTCTTTTCCTTCAAGGTGGGGCCACCACCCAATTCGCCGCCATTCCTCTCAACATCTGCTCACCGGACGACGCCGTTGATTACATCGTCACCGGTTCATGGGGTGACAAGGCTTACAAAGAAGCAGCTAAATACAGCAAACCGAATGTCATTTGGAGTGGTAAATCGGAAAAATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E269647" ref_strand="+" ref_description="SGN-E269647 [cLEM-2-N18]">
      <seq>tacatacaaatctatgtctatttcctgctcagccgccgcctccacaactaccactcccctccaaacaccccctaccacctcatcagatcgggtcttcaacttggctgccggacccgccacgctcccggaaaatgtcctacaaaaagcccaagccgacctcgttaactggcggggctccggcatgtccgttatggaaatgagccaccgtggaaaagaatccctttccattattcaaaaagcagaatcagatctgagaacccttcttaatatctctgatgaatacgccgttcttttccttcaaggtggggccaccacccaattcgccgccattcctctcaacatctgctcaccggacgacgccgttgattacatcgtcaccggttcatggggtgataaggctttcaaagaagcagctaaatacagcaaaccgaatgtcatttggagtggtaaatcggaaaaatacaccaagatcccgaattttgattcgttggtacaaaacccagatgccaagtatttgcatatatgcgccaatgaaactattcatggggttgaattcaaagattacccaacaccccttaacgagaaaaccattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="22021" stop="23213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22321" g_stop="22913" g_length="593"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="593" r_length="593" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E269647" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22321" e_stop="22913"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACATACAAATCTATGTCTATTTCCTGCTCAGCCGCCGCCTCCACAACTACCACTCCCCTCCAAACACCCCCTACCACCTCATCAGATCGGGTCTTCAACTTCGCTGCCGGACCCGCCACGCTCCCGGAAAATGTCCTACAAAAAGCCCAAGCCGACCTCGTTAACTGGCGGGGCTCCGGCATGTCCGTTATGGAAATGAGCCACCGTGGAAAAGAATTCCTTTCCATTATTCAAAAAGCAGAATCAGATCTGAGAACCCTTCTTAATATCTCTGATGAATACGCCGTTCTTTTCCTTCAAGGTGGGGCCACCACCCAATTCGCCGCCATTCCTCTCAACATCTGCTCACCGGACGACGCCGTTGATTACATCGTCACCGGTTCATGGGGTGATAAGGCTTTCAAAGAAGCAGCTAAATACAGCAAACCGAATGTCATTTGGAGTGGTAAATCGGAAAAATACACCAAGATCCCGAATTTTGATTCGTTGGTACAAAACCCAGATGCCAAGTATTTGCATATATGCGCCAATGAAACTATTCATGGGGTTGAATTCAAAGATTACCCAACACCCCTTAACGAGAAAACCATTC</genome_strand>
        <mrna_strand>TACATACAAATCTATGTCTATTTCCTGCTCAGCCGCCGCCTCCACAACTACCACTCCCCTCCAAACACCCCCTACCACCTCATCAGATCGGGTCTTCAACTTGGCTGCCGGACCCGCCACGCTCCCGGAAAATGTCCTACAAAAAGCCCAAGCCGACCTCGTTAACTGGCGGGGCTCCGGCATGTCCGTTATGGAAATGAGCCACCGTGGAAAAGAATCCCTTTCCATTATTCAAAAAGCAGAATCAGATCTGAGAACCCTTCTTAATATCTCTGATGAATACGCCGTTCTTTTCCTTCAAGGTGGGGCCACCACCCAATTCGCCGCCATTCCTCTCAACATCTGCTCACCGGACGACGCCGTTGATTACATCGTCACCGGTTCATGGGGTGATAAGGCTTTCAAAGAAGCAGCTAAATACAGCAAACCGAATGTCATTTGGAGTGGTAAATCGGAAAAATACACCAAGATCCCGAATTTTGATTCGTTGGTACAAAACCCAGATGCCAAGTATTTGCATATATGCGCCAATGAAACTATTCATGGGGTTGAATTCAAAGATTACCCAACACCCCTTAACGAGAAAACCATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E376558" ref_strand="+" ref_description="SGN-E376558 [TUS-17-N13]">
      <seq>aaatctatgtctatttcctgctcagccgccgcctccacaactaccactcccctccaaacaccccctaccacctcatcagatcgggtcttcaacttcgctgccggacccgccacgctcccggaaaatgtcctacaaaaagcccaagccgacctcgttaactggcggggctccggcatgtccgttatggaaatgagccaccgtggaaaagaattcctttccattattcaaaaagcagaatcagatctgagaacccttcttaatatctctgatgaatacgccgttcttttccttcaaggtggggccaccacccaattcgccgccattcctctcaacatctgctcaccggacgacgccgttgattacatcgtcaccggttcatggggtgataaggctttcaaagaagcagctaaatacagcaaaccgaatgtcatttggagtggtaaatcggaaaaatacaccaagatcccgaattttgattcgttggtacaaaacccagatgccaagtatttgcatatatgcgccaatgaaactattcatggggttgaattcaaagattacccaacaccccttaacgagaaaaccattcttgttgctgatatgtcctcgaatttctgttcaaaaccagtagatgtttctaaatttggtatcatttacgctggtgcacagaaaaatgttggtccatctgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="22028" stop="23314"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22328" g_stop="23014" g_length="687"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="687" r_length="687" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E376558" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22328" e_stop="23014"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCTATGTCTATTTCCTGCTCAGCCGCCGCCTCCACAACTACCACTCCCCTCCAAACACCCCCTACCACCTCATCAGATCGGGTCTTCAACTTCGCTGCCGGACCCGCCACGCTCCCGGAAAATGTCCTACAAAAAGCCCAAGCCGACCTCGTTAACTGGCGGGGCTCCGGCATGTCCGTTATGGAAATGAGCCACCGTGGAAAAGAATTCCTTTCCATTATTCAAAAAGCAGAATCAGATCTGAGAACCCTTCTTAATATCTCTGATGAATACGCCGTTCTTTTCCTTCAAGGTGGGGCCACCACCCAATTCGCCGCCATTCCTCTCAACATCTGCTCACCGGACGACGCCGTTGATTACATCGTCACCGGTTCATGGGGTGATAAGGCTTTCAAAGAAGCAGCTAAATACAGCAAACCGAATGTCATTTGGAGTGGTAAATCGGAAAAATACACCAAGATCCCGAATTTTGATTCGTTGGTACAAAACCCAGATGCCAAGTATTTGCATATATGCGCCAATGAAACTATTCATGGGGTTGAATTCAAAGATTACCCAACACCCCTTAACGAGAAAACCATTCTTGTTGCTGATATGTCCTCGAATTTCTGTTCAAAACCAGTAGATGTTTCTAAATTTGGTATCATTTACGCTGGTGCACAGAAAAATGTTGGTCCATCTGGA</genome_strand>
        <mrna_strand>AAATCTATGTCTATTTCCTGCTCAGCCGCCGCCTCCACAACTACCACTCCCCTCCAAACACCCCCTACCACCTCATCAGATCGGGTCTTCAACTTCGCTGCCGGACCCGCCACGCTCCCGGAAAATGTCCTACAAAAAGCCCAAGCCGACCTCGTTAACTGGCGGGGCTCCGGCATGTCCGTTATGGAAATGAGCCACCGTGGAAAAGAATTCCTTTCCATTATTCAAAAAGCAGAATCAGATCTGAGAACCCTTCTTAATATCTCTGATGAATACGCCGTTCTTTTCCTTCAAGGTGGGGCCACCACCCAATTCGCCGCCATTCCTCTCAACATCTGCTCACCGGACGACGCCGTTGATTACATCGTCACCGGTTCATGGGGTGATAAGGCTTTCAAAGAAGCAGCTAAATACAGCAAACCGAATGTCATTTGGAGTGGTAAATCGGAAAAATACACCAAGATCCCGAATTTTGATTCGTTGGTACAAAACCCAGATGCCAAGTATTTGCATATATGCGCCAATGAAACTATTCATGGGGTTGAATTCAAAGATTACCCAACACCCCTTAACGAGAAAACCATTCTTGTTGCTGATATGTCCTCGAATTTCTGTTCAAAACCAGTAGATGTTTCTAAATTTGGTATCATTTACGCTGGTGCACAGAAAAATGTTGGTCCATCTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E208168" ref_strand="+" ref_description="SGN-E208168 [cLEC-37-G9]">
      <seq>aaatctatgtctatttcctgctcagccgccgcctccacaactaccactcccctccaaacaccccctaccacctcatcagatcgggtcttcaacttcgctgccggacccgccacgctcccggaaaatgtcctacaaaaagcccaagccgacctcgttaactggcggggctccggcatgtccgttatggaaatgagccaccgtggaaaagaattcctttccattattcaaaaagcagaatcagatctgagaacccttcttaatatctctgatgaatacgccgttcttttccttcaaggtggggccaccacccaattcgccgccattcctctcaacatctgctcaccggacgacgccgttgattacatcgtcaccggttcatggggtgataaggctttcaaagaagcagctaaatacagcaaaccgaatgtcatttggagtggtaaatcggaaaaatacaccaagatcccgaatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="22028" stop="23101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22328" g_stop="22801" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="474" r_length="474" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E208168" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22328" e_stop="22801"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCTATGTCTATTTCCTGCTCAGCCGCCGCCTCCACAACTACCACTCCCCTCCAAACACCCCCTACCACCTCATCAGATCGGGTCTTCAACTTCGCTGCCGGACCCGCCACGCTCCCGGAAAATGTCCTACAAAAAGCCCAAGCCGACCTCGTTAACTGGCGGGGCTCCGGCATGTCCGTTATGGAAATGAGCCACCGTGGAAAAGAATTCCTTTCCATTATTCAAAAAGCAGAATCAGATCTGAGAACCCTTCTTAATATCTCTGATGAATACGCCGTTCTTTTCCTTCAAGGTGGGGCCACCACCCAATTCGCCGCCATTCCTCTCAACATCTGCTCACCGGACGACGCCGTTGATTACATCGTCACCGGTTCATGGGGTGATAAGGCTTTCAAAGAAGCAGCTAAATACAGCAAACCGAATGTCATTTGGAGTGGTAAATCGGAAAAATACACCAAGATCCCGAATTTT</genome_strand>
        <mrna_strand>AAATCTATGTCTATTTCCTGCTCAGCCGCCGCCTCCACAACTACCACTCCCCTCCAAACACCCCCTACCACCTCATCAGATCGGGTCTTCAACTTCGCTGCCGGACCCGCCACGCTCCCGGAAAATGTCCTACAAAAAGCCCAAGCCGACCTCGTTAACTGGCGGGGCTCCGGCATGTCCGTTATGGAAATGAGCCACCGTGGAAAAGAATTCCTTTCCATTATTCAAAAAGCAGAATCAGATCTGAGAACCCTTCTTAATATCTCTGATGAATACGCCGTTCTTTTCCTTCAAGGTGGGGCCACCACCCAATTCGCCGCCATTCCTCTCAACATCTGCTCACCGGACGACGCCGTTGATTACATCGTCACCGGTTCATGGGGTGATAAGGCTTTCAAAGAAGCAGCTAAATACAGCAAACCGAATGTCATTTGGAGTGGTAAATCGGAAAAATACACCAAGATCCCGAATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E301382" ref_strand="+" ref_description="SGN-E301382 [cLEW-24-D16]">
      <seq>tctatgtctatttcctgctcagccgacgcctccacaactaccactcccctccaaacaccccctaccacctcatcagaacaggtcttcaacttcgctgccggacccgccacgctcccggaaaatgtgctacaaaaagcccaagccgacctcgttaactggcggggctccggcatgtccgttatggaaatgagccaccgtggaaaagaattcctttccattattcaaaaagcagaatcagatctgagaacccttcttaatatctctgatagaatacgccgttcttttccttcaaggtggggccaccacccaattcgccgccatacctgtcaacatctgctcaccggacgacgccgttgattacatcgtcaccggttcatggggtgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="22031" stop="23015"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22331" g_stop="22715" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E301382" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22331" e_stop="22715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTATGTCTATTTCCTGCTCAGCCGCCGCCTCCACAACTACCACTCCCCTCCAAACACCCCCTACCACCTCATCAGATCGGGTCTTCAACTTCGCTGCCGGACCCGCCACGCTCCCGGAAAATGTCCTACAAAAAGCCCAAGCCGACCTCGTTAACTGGCGGGGCTCCGGCATGTCCGTTATGGAAATGAGCCACCGTGGAAAAGAATTCCTTTCCATTATTCAAAAAGCAGAATCAGATCTGAGAACCCTTCTTAATATCTCTGAT-GAATACGCCGTTCTTTTCCTTCAAGGTGGGGCCACCACCCAATTCGCCGCCATTCCTCTCAACATCTGCTCACCGGACGACGCCGTTGATTACATCGTCACCGGTTCATGGGGTGATA</genome_strand>
        <mrna_strand>TCTATGTCTATTTCCTGCTCAGCCGACGCCTCCACAACTACCACTCCCCTCCAAACACCCCCTACCACCTCATCAGAACAGGTCTTCAACTTCGCTGCCGGACCCGCCACGCTCCCGGAAAATGTGCTACAAAAAGCCCAAGCCGACCTCGTTAACTGGCGGGGCTCCGGCATGTCCGTTATGGAAATGAGCCACCGTGGAAAAGAATTCCTTTCCATTATTCAAAAAGCAGAATCAGATCTGAGAACCCTTCTTAATATCTCTGATAGAATACGCCGTTCTTTTCCTTCAAGGTGGGGCCACCACCCAATTCGCCGCCATACCTGTCAACATCTGCTCACCGGACGACGCCGTTGATTACATCGTCACCGGTTCATGGGGTGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E453241" ref_strand="+" ref_description="SGN-E453241 [cSTS-19-I20]">
      <seq>tgtccatttcgtgctcagccgccgccaccacaaccaccacccccctccaaacacccccttccacctcttcagatcgggtcttcaacttcgctgccggacccgccaccctcccggaaaatgtcctccaaaaagcccaagccgacctcgttaactggcggggctccggcatgtccgttatggaaatgagccaccgtggcaaagaattcctttccattattcaaaaagcagaatcagatctgagaacccttcttaatatctctgatgaatacgccgttcttttccttcaaggtggggccaccacccaattcgccgccattcctctcaacatctgctcaccggatgacgccgttgattacatcgtcaccggttcatggggtgacaaggcttacaaagaagcagctaaatacagcaaacccaatgtcatttggagtggcaaatcggaaaaatacaccaagatcccgaattttgattcgttggtacaaaacccagatgccaagtatttgcatatatgcgccaatgaaactattcatggggttgaattcaagaattacccaacaccccttaacgagaaaaccattcttgttgctgatatgtcctccaatttctgttcaaaccagtagatgtttctaaatttggtatcattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="22035" stop="23280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22335" g_stop="22980" g_length="646"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="645" r_length="645" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E453241" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E453241" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22335" e_stop="22980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCTATTTCCTGCTCAGCCGCCGCCTCCACAACTACCACTCCCCTCCAAACACCCCCTACCACCTCATCAGATCGGGTCTTCAACTTCGCTGCCGGACCCGCCACGCTCCCGGAAAATGTCCTACAAAAAGCCCAAGCCGACCTCGTTAACTGGCGGGGCTCCGGCATGTCCGTTATGGAAATGAGCCACCGTGGAAAAGAATTCCTTTCCATTATTCAAAAAGCAGAATCAGATCTGAGAACCCTTCTTAATATCTCTGATGAATACGCCGTTCTTTTCCTTCAAGGTGGGGCCACCACCCAATTCGCCGCCATTCCTCTCAACATCTGCTCACCGGACGACGCCGTTGATTACATCGTCACCGGTTCATGGGGTGATAAGGCTTTCAAAGAAGCAGCTAAATACAGCAAACCGAATGTCATTTGGAGTGGTAAATCGGAAAAATACACCAAGATCCCGAATTTTGATTCGTTGGTACAAAACCCAGATGCCAAGTATTTGCATATATGCGCCAATGAAACTATTCATGGGGTTGAATTCAAAGATTACCCAACACCCCTTAACGAGAAAACCATTCTTGTTGCTGATATGTCCTCGAATTTCTGTTCAAAACCAGTAGATGTTTCTAAATTTGGTATCATTTA</genome_strand>
        <mrna_strand>TGTCCATTTCGTGCTCAGCCGCCGCCACCACAACCACCACCCCCCTCCAAACACCCCCTTCCACCTCTTCAGATCGGGTCTTCAACTTCGCTGCCGGACCCGCCACCCTCCCGGAAAATGTCCTCCAAAAAGCCCAAGCCGACCTCGTTAACTGGCGGGGCTCCGGCATGTCCGTTATGGAAATGAGCCACCGTGGCAAAGAATTCCTTTCCATTATTCAAAAAGCAGAATCAGATCTGAGAACCCTTCTTAATATCTCTGATGAATACGCCGTTCTTTTCCTTCAAGGTGGGGCCACCACCCAATTCGCCGCCATTCCTCTCAACATCTGCTCACCGGATGACGCCGTTGATTACATCGTCACCGGTTCATGGGGTGACAAGGCTTACAAAGAAGCAGCTAAATACAGCAAACCCAATGTCATTTGGAGTGGCAAATCGGAAAAATACACCAAGATCCCGAATTTTGATTCGTTGGTACAAAACCCAGATGCCAAGTATTTGCATATATGCGCCAATGAAACTATTCATGGGGTTGAATTCAAGAATTACCCAACACCCCTTAACGAGAAAACCATTCTTGTTGCTGATATGTCCTCCAATTTCTGTTC-AAACCAGTAGATGTTTCTAAATTTGGTATCATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E214277" ref_strand="+" ref_description="SGN-E214277 [cLEC-77-P17]">
      <seq>ctcatcagatcgggtcttcaacttcgctgccggacccgccacgctcccggaaaatgtcctacaaaaagcccaagccgacctcgttaactggcggggctccggcatgtccgttatggaaatgagccaccgtggaaaagaattcctttccattattcaaaaagcagaatcagatctgagaacccttcttaatatctctgatgaatacgccgttcttttccttcaaggtggggccaccacccaattcgccgccattcctctcaacatctgctcaccggacgacgccgttgattacatcgtcaccggttcatggggtgataaggctttcaaagaagcagctaaatacagcaaaccgaatgtcatttggagtggtaaatcggaaaaatacaccaagatcccgaattttgattcgttggtacaaaacccagatgccaagtatttgcatatatgcgccaatgaaactattcatggggttgaattcaaagattacccaacaccccttaacgagaaaaccattcttgttgctgatatgtcctcgaatttctgttcaaaaccagtagatgtttctaaatttggtatcatttacgctggtgcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="22099" stop="23291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22399" g_stop="22991" g_length="593"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="593" r_length="593" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E214277" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214277" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22399" e_stop="22991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATCAGATCGGGTCTTCAACTTCGCTGCCGGACCCGCCACGCTCCCGGAAAATGTCCTACAAAAAGCCCAAGCCGACCTCGTTAACTGGCGGGGCTCCGGCATGTCCGTTATGGAAATGAGCCACCGTGGAAAAGAATTCCTTTCCATTATTCAAAAAGCAGAATCAGATCTGAGAACCCTTCTTAATATCTCTGATGAATACGCCGTTCTTTTCCTTCAAGGTGGGGCCACCACCCAATTCGCCGCCATTCCTCTCAACATCTGCTCACCGGACGACGCCGTTGATTACATCGTCACCGGTTCATGGGGTGATAAGGCTTTCAAAGAAGCAGCTAAATACAGCAAACCGAATGTCATTTGGAGTGGTAAATCGGAAAAATACACCAAGATCCCGAATTTTGATTCGTTGGTACAAAACCCAGATGCCAAGTATTTGCATATATGCGCCAATGAAACTATTCATGGGGTTGAATTCAAAGATTACCCAACACCCCTTAACGAGAAAACCATTCTTGTTGCTGATATGTCCTCGAATTTCTGTTCAAAACCAGTAGATGTTTCTAAATTTGGTATCATTTACGCTGGTGCAC</genome_strand>
        <mrna_strand>CTCATCAGATCGGGTCTTCAACTTCGCTGCCGGACCCGCCACGCTCCCGGAAAATGTCCTACAAAAAGCCCAAGCCGACCTCGTTAACTGGCGGGGCTCCGGCATGTCCGTTATGGAAATGAGCCACCGTGGAAAAGAATTCCTTTCCATTATTCAAAAAGCAGAATCAGATCTGAGAACCCTTCTTAATATCTCTGATGAATACGCCGTTCTTTTCCTTCAAGGTGGGGCCACCACCCAATTCGCCGCCATTCCTCTCAACATCTGCTCACCGGACGACGCCGTTGATTACATCGTCACCGGTTCATGGGGTGATAAGGCTTTCAAAGAAGCAGCTAAATACAGCAAACCGAATGTCATTTGGAGTGGTAAATCGGAAAAATACACCAAGATCCCGAATTTTGATTCGTTGGTACAAAACCCAGATGCCAAGTATTTGCATATATGCGCCAATGAAACTATTCATGGGGTTGAATTCAAAGATTACCCAACACCCCTTAACGAGAAAACCATTCTTGTTGCTGATATGTCCTCGAATTTCTGTTCAAAACCAGTAGATGTTTCTAAATTTGGTATCATTTACGCTGGTGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E449450" ref_strand="+" ref_description="SGN-E449450 [cSTS-6-F3]">
      <seq>ctccaaaaagcccaagccgacctcgttaactggcggggctccggcatgtccgttatggaaatgagccaccgtggcaaagaattcctttccattattcaaaaagcagaatcagatctgagaacccttcttaatatctctgatgaatacgccgttcttttccttcaaggtggggccaccacccaattcgccgccattcctctcaacatctgctcaccggatgacgccgttgattacatcgtcaccggttcatggggtgacaaggcttacaaagaagcagctaaatacagcaaacccaatgtcatttggagtggcaaatcggaaaaatacaccaagatcccgaattttgattcgttggtacaaaacccagatgccaagtatttgcatatatgcgccaatgaaactattcatggggttgaattcaagaattacccaacaccccttaacgagaaaaccattcttgttgctgatatgtcctccaatttctgttcaaaaccagtagatgtttctaaatttggtatcatttacgctggtgcacagaaaaatgttggtccatctggagtcaccattgtgattataaggaaagatttgattggaaatgcacaggaaagtacacctgtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="22157" stop="23376"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22457" g_stop="23076" g_length="620"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="620" r_length="620" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E449450" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E449450" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22457" e_stop="23076"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACAAAAAGCCCAAGCCGACCTCGTTAACTGGCGGGGCTCCGGCATGTCCGTTATGGAAATGAGCCACCGTGGAAAAGAATTCCTTTCCATTATTCAAAAAGCAGAATCAGATCTGAGAACCCTTCTTAATATCTCTGATGAATACGCCGTTCTTTTCCTTCAAGGTGGGGCCACCACCCAATTCGCCGCCATTCCTCTCAACATCTGCTCACCGGACGACGCCGTTGATTACATCGTCACCGGTTCATGGGGTGATAAGGCTTTCAAAGAAGCAGCTAAATACAGCAAACCGAATGTCATTTGGAGTGGTAAATCGGAAAAATACACCAAGATCCCGAATTTTGATTCGTTGGTACAAAACCCAGATGCCAAGTATTTGCATATATGCGCCAATGAAACTATTCATGGGGTTGAATTCAAAGATTACCCAACACCCCTTAACGAGAAAACCATTCTTGTTGCTGATATGTCCTCGAATTTCTGTTCAAAACCAGTAGATGTTTCTAAATTTGGTATCATTTACGCTGGTGCACAGAAAAATGTTGGTCCATCTGGAGTTACCATTGTGATTATAAGGAAAGATTTGATTGGAAATGCACAGGAAAGTACACCTGTGAT</genome_strand>
        <mrna_strand>CTCCAAAAAGCCCAAGCCGACCTCGTTAACTGGCGGGGCTCCGGCATGTCCGTTATGGAAATGAGCCACCGTGGCAAAGAATTCCTTTCCATTATTCAAAAAGCAGAATCAGATCTGAGAACCCTTCTTAATATCTCTGATGAATACGCCGTTCTTTTCCTTCAAGGTGGGGCCACCACCCAATTCGCCGCCATTCCTCTCAACATCTGCTCACCGGATGACGCCGTTGATTACATCGTCACCGGTTCATGGGGTGACAAGGCTTACAAAGAAGCAGCTAAATACAGCAAACCCAATGTCATTTGGAGTGGCAAATCGGAAAAATACACCAAGATCCCGAATTTTGATTCGTTGGTACAAAACCCAGATGCCAAGTATTTGCATATATGCGCCAATGAAACTATTCATGGGGTTGAATTCAAGAATTACCCAACACCCCTTAACGAGAAAACCATTCTTGTTGCTGATATGTCCTCCAATTTCTGTTCAAAACCAGTAGATGTTTCTAAATTTGGTATCATTTACGCTGGTGCACAGAAAAATGTTGGTCCATCTGGAGTCACCATTGTGATTATAAGGAAAGATTTGATTGGAAATGCACAGGAAAGTACACCTGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E308769" ref_strand="+" ref_description="SGN-E308769 [cLEZ-11-K18]">
      <seq>cccaattcgccgccattcctctcaacatctgctcaccggacgacgccgttgattacatcgtcaccggttcatggggtgataaggctttcaaagaagcagctaaatacagcaaaccgaatgtcatttggagtggtaaatcggaaaaatacaccaagatcccgaattttgattcgttggtacaaaacccagatgccaagtatttgcatatatgcgccaatgaaactattcatggggttgaattcaaagattacccaacaccccttaacgagaaaaccattcttgttgctgatatgtcctcgaatttctgttcaaaaccagtagatgtttctaaatttggtatcatttacgctggtgcacagaaaaatgttggtccatctggagttaccattgtgattataaggaaagatttgattggaaatgcacaggaaagtacacctgtgatgttggattacaagatccatgctgagaacaattcgttgtataacacacccccttgttatggtatttacatgtgcgggcttgtgtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="22335" stop="23462"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22635" g_stop="23162" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="528" r_length="528" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E308769" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22635" e_stop="23162"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAATTCGCCGCCATTCCTCTCAACATCTGCTCACCGGACGACGCCGTTGATTACATCGTCACCGGTTCATGGGGTGATAAGGCTTTCAAAGAAGCAGCTAAATACAGCAAACCGAATGTCATTTGGAGTGGTAAATCGGAAAAATACACCAAGATCCCGAATTTTGATTCGTTGGTACAAAACCCAGATGCCAAGTATTTGCATATATGCGCCAATGAAACTATTCATGGGGTTGAATTCAAAGATTACCCAACACCCCTTAACGAGAAAACCATTCTTGTTGCTGATATGTCCTCGAATTTCTGTTCAAAACCAGTAGATGTTTCTAAATTTGGTATCATTTACGCTGGTGCACAGAAAAATGTTGGTCCATCTGGAGTTACCATTGTGATTATAAGGAAAGATTTGATTGGAAATGCACAGGAAAGTACACCTGTGATGTTGGATTACAAGATCCATGCTGAGAACAATTCGTTGTATAACACACCCCCTTGTTATGGTATTTACATGTGCGGGCTTGTGTTTG</genome_strand>
        <mrna_strand>CCCAATTCGCCGCCATTCCTCTCAACATCTGCTCACCGGACGACGCCGTTGATTACATCGTCACCGGTTCATGGGGTGATAAGGCTTTCAAAGAAGCAGCTAAATACAGCAAACCGAATGTCATTTGGAGTGGTAAATCGGAAAAATACACCAAGATCCCGAATTTTGATTCGTTGGTACAAAACCCAGATGCCAAGTATTTGCATATATGCGCCAATGAAACTATTCATGGGGTTGAATTCAAAGATTACCCAACACCCCTTAACGAGAAAACCATTCTTGTTGCTGATATGTCCTCGAATTTCTGTTCAAAACCAGTAGATGTTTCTAAATTTGGTATCATTTACGCTGGTGCACAGAAAAATGTTGGTCCATCTGGAGTTACCATTGTGATTATAAGGAAAGATTTGATTGGAAATGCACAGGAAAGTACACCTGTGATGTTGGATTACAAGATCCATGCTGAGAACAATTCGTTGTATAACACACCCCCTTGTTATGGTATTTACATGTGCGGGCTTGTGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E303195" ref_strand="+" ref_description="SGN-E303195 [cLEX-5-N22]">
      <seq>ttcaaagaagcagctaaatacagcaaaccgaatgtcatttggagtggtaaatcggaaaaatacaccaagatcccgaattttgattcgttggtacaaaacccagatgccaagtatttgcatatatgcgccaatgaaactattcatggggttgaattcaaagattacccaacaccccttaacgagaaaaccattcttgttgctgatatgtcctcgaatttctgttcaaaaccagtagatgtttctaaatttggtatcatttacgctggtgcacagaaaaatgttggtccatctggagttaccattgtgattataaggaaagatttgattggaaatgcacaggaaagtacacctgtgatgttggattacaagatccatgctgagaacaattcgttgtataacacacccccttgttatggtatttacatgtgcgggcttgtgtttgaagatctgttggatcaaggtggattagtagaggttgagaagaagaatcagaagaaagctcagattttgtatgatgctattgattctagcaatggattttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="22421" stop="23563"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22721" g_stop="23263" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="543" r_length="543" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E303195" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303195" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22721" e_stop="23263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAAGAAGCAGCTAAATACAGCAAACCGAATGTCATTTGGAGTGGTAAATCGGAAAAATACACCAAGATCCCGAATTTTGATTCGTTGGTACAAAACCCAGATGCCAAGTATTTGCATATATGCGCCAATGAAACTATTCATGGGGTTGAATTCAAAGATTACCCAACACCCCTTAACGAGAAAACCATTCTTGTTGCTGATATGTCCTCGAATTTCTGTTCAAAACCAGTAGATGTTTCTAAATTTGGTATCATTTACGCTGGTGCACAGAAAAATGTTGGTCCATCTGGAGTTACCATTGTGATTATAAGGAAAGATTTGATTGGAAATGCACAGGAAAGTACACCTGTGATGTTGGATTACAAGATCCATGCTGAGAACAATTCGTTGTATAACACACCCCCTTGTTATGGTATTTACATGTGCGGGCTTGTGTTTGAAGATCTGTTGGATCAAGGTGGATTAGTAGAGGTTGAGAAGAAGAATCAGAAGAAAGCTCAGATTTTGTATGATGCTATTGATTCTAGCAATGGATTTTAC</genome_strand>
        <mrna_strand>TTCAAAGAAGCAGCTAAATACAGCAAACCGAATGTCATTTGGAGTGGTAAATCGGAAAAATACACCAAGATCCCGAATTTTGATTCGTTGGTACAAAACCCAGATGCCAAGTATTTGCATATATGCGCCAATGAAACTATTCATGGGGTTGAATTCAAAGATTACCCAACACCCCTTAACGAGAAAACCATTCTTGTTGCTGATATGTCCTCGAATTTCTGTTCAAAACCAGTAGATGTTTCTAAATTTGGTATCATTTACGCTGGTGCACAGAAAAATGTTGGTCCATCTGGAGTTACCATTGTGATTATAAGGAAAGATTTGATTGGAAATGCACAGGAAAGTACACCTGTGATGTTGGATTACAAGATCCATGCTGAGAACAATTCGTTGTATAACACACCCCCTTGTTATGGTATTTACATGTGCGGGCTTGTGTTTGAAGATCTGTTGGATCAAGGTGGATTAGTAGAGGTTGAGAAGAAGAATCAGAAGAAAGCTCAGATTTTGTATGATGCTATTGATTCTAGCAATGGATTTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E565627" ref_strand="+" ref_description="SGN-E565627 [4066]">
      <seq>atcatttacgctggtgcacagaaaaatgttggtccatctgggagttaccattgtgattataagaaagatttgattggaaatgcacaggaaagtacactgtgatgttggattacaagatccatgctgagaacaatcattgtataacacaaccccttgttatgggatttacatgtgtgggcttgtatttgaagatctgttggatcaacgtggattagtagaggttgagaagaagaatcagaagaaagctcagattttgtatgatgctattgattctagcaatggattttacaagtgcccagttgagaaatcagtgaggtctttgatgaatgtgccatttacattggctaaaccagaattggaagctgaatttgtgaagacagctgctggtgagaagatggtgcagcttaagggacataggtctgttggtggaatgagggcttcaatatacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="22673" stop="23724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22973" g_stop="23424" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E565627" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E565627" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22973" e_stop="23424"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATTTACGCTGGTGCACAGAAAAATGTTGGTCCATCT-GGAGTTACCATTGTGATTATAAGGAAAGATTTGATTGGAAATGCACAGGAAAGTACACCTGTGATGTTGGATTACAAGATCCATGCTGAGAACAATTCGTTGTATAACACACCCCCTTGTTATGGTATTTACATGTGCGGGCTTGTGTTTGAAGATCTGTTGGATCAAGGTGGATTAGTAGAGGTTGAGAAGAAGAATCAGAAGAAAGCTCAGATTTTGTATGATGCTATTGATTCTAGCAATGGATTTTACAGGTGCCCAGTTGATAAATCAGTGAGGTCTTTGATGAATGTGCCATTTACATTGGCTAAACCAGAATTGGAAGCTGAATTTGTGAAGACAGCTGCTGGTGAGAAGATGGTGCAGCTTAAGGGACATAGGTCTGTTGGTGGAATGAGGGCTTCAATATACAA</genome_strand>
        <mrna_strand>ATCATTTACGCTGGTGCACAGAAAAATGTTGGTCCATCTGGGAGTTACCATTGTGATTATAA-GAAAGATTTGATTGGAAATGCACAGGAAAGTACA-CTGTGATGTTGGATTACAAGATCCATGCTGAGAACAA-TCATTGTATAACACAACCCCTTGTTATGGGATTTACATGTGTGGGCTTGTATTTGAAGATCTGTTGGATCAACGTGGATTAGTAGAGGTTGAGAAGAAGAATCAGAAGAAAGCTCAGATTTTGTATGATGCTATTGATTCTAGCAATGGATTTTACAAGTGCCCAGTTGAGAAATCAGTGAGGTCTTTGATGAATGTGCCATTTACATTGGCTAAACCAGAATTGGAAGCTGAATTTGTGAAGACAGCTGCTGGTGAGAAGATGGTGCAGCTTAAGGGACATAGGTCTGTTGGTGGAATGAGGGCTTCAATATACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E376557" ref_strand="+" ref_description="SGN-E376557 [TUS-17-N13](-)">
      <seq>tacgctggtgcacagaaaaatgttggtccatctggagttaccattgtgatataaagaaagatttgattggaaatgcacaggaaagtacacctgtgatgttggattacaagatccatgctgagaacaattcgttgtataacacacccccttgttatggtatttacatgtgcgggcttgtgtttgaagatctgttggatcaaggtggattagtagaggttgagaagaagaatcagaagaaagctcagattttgtatgatgctattgattctagcaatggattttacaggtgcccagttgataaatcagtgaggtctttgatgaatgtgccatttacattggctaaaccagaattggaagctgaatttgtgaagacagctgctggtgagaagatggtgcagcttaagggacataggtctgttggtggaatgagggcttcaatatacaatgctatgcctttggctggagttgaaaagttggtagctttcatgaaggagttccaagctaagcatggttaaaactatattgttctattttaatatttgcaaccctttataattttctgtttttttgtgcctttatgttctgttggtttatttgagttgagagagagagtctgaatgacaacacttgagtatgtgttagtcctattgattcttgtgtacttctaggaagtttttgtttttagaaatatggaaactattacttagtcctattagaagtttaatgaagaaatattttcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="22679" stop="24020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22979" g_stop="23727" g_length="749"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="748" r_length="748" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E376557" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376557" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22979" e_stop="23727"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGCTGGTGCACAGAAAAATGTTGGTCCATCTGGAGTTACCATTGTGATTATAAGGAAAGATTTGATTGGAAATGCACAGGAAAGTACACCTGTGATGTTGGATTACAAGATCCATGCTGAGAACAATTCGTTGTATAACACACCCCCTTGTTATGGTATTTACATGTGCGGGCTTGTGTTTGAAGATCTGTTGGATCAAGGTGGATTAGTAGAGGTTGAGAAGAAGAATCAGAAGAAAGCTCAGATTTTGTATGATGCTATTGATTCTAGCAATGGATTTTACAGGTGCCCAGTTGATAAATCAGTGAGGTCTTTGATGAATGTGCCATTTACATTGGCTAAACCAGAATTGGAAGCTGAATTTGTGAAGACAGCTGCTGGTGAGAAGATGGTGCAGCTTAAGGGACATAGGTCTGTTGGTGGAATGAGGGCTTCAATATACAATGCTATGCCTTTGGCTGGAGTTGAAAAGTTGGTAGCTTTCATGAAGGAGTTCCAAGCTAAGCATGGTTAAAACTATATTGTTCTATTTTAATATTTGCAACCCTTTATAATTTTCTGTTTTTTTGTGCCTTTATGTTCTGTTGGTTTATTTGAGTTGAGAGAGAGAGTCTGAATGACAACACTTGAGTATGTGTTAGTCCTATTGATTCTTGTGTACTTCTAGGAAGTTTTTGTTTTTAGAAATATGGAAACTATTACTTAGTCCTATTAGAAGTTTAATGAAGAAGTATTTTCAATTTGTTT</genome_strand>
        <mrna_strand>TACGCTGGTGCACAGAAAAATGTTGGTCCATCTGGAGTTACCATTGTGA-TATAAAGAAAGATTTGATTGGAAATGCACAGGAAAGTACACCTGTGATGTTGGATTACAAGATCCATGCTGAGAACAATTCGTTGTATAACACACCCCCTTGTTATGGTATTTACATGTGCGGGCTTGTGTTTGAAGATCTGTTGGATCAAGGTGGATTAGTAGAGGTTGAGAAGAAGAATCAGAAGAAAGCTCAGATTTTGTATGATGCTATTGATTCTAGCAATGGATTTTACAGGTGCCCAGTTGATAAATCAGTGAGGTCTTTGATGAATGTGCCATTTACATTGGCTAAACCAGAATTGGAAGCTGAATTTGTGAAGACAGCTGCTGGTGAGAAGATGGTGCAGCTTAAGGGACATAGGTCTGTTGGTGGAATGAGGGCTTCAATATACAATGCTATGCCTTTGGCTGGAGTTGAAAAGTTGGTAGCTTTCATGAAGGAGTTCCAAGCTAAGCATGGTTAAAACTATATTGTTCTATTTTAATATTTGCAACCCTTTATAATTTTCTGTTTTTTTGTGCCTTTATGTTCTGTTGGTTTATTTGAGTTGAGAGAGAGAGTCTGAATGACAACACTTGAGTATGTGTTAGTCCTATTGATTCTTGTGTACTTCTAGGAAGTTTTTGTTTTTAGAAATATGGAAACTATTACTTAGTCCTATTAGAAGTTTAATGAAGAAATATTTTCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E549568" ref_strand="+" ref_description="SGN-E549568 [TUS-71-J22](-)">
      <seq>aggaaagtacacctgtgatgtnggattacaagatccatgctgagaacaattcgttgtataacacacccccttgttatggtatttacatgtgcgggcttgtgtttgaagatctgttggatcaaggtggattagtagaggttgagaagaagaatcagaagaaagctcagattttgtatgatgctattgattctagtaatggattttacaggtgcccagttgataaatcagtgagatctttgatgaatgtgccatttacattggctaaaccagaactggaagctgaatttgtgaagacagctgctggtgagaagatggtgcagcttaagggacataggtctgttggtggaatgagggcttcaatatacaatgctatgcctttggctggagttgaaaagttggtagctttcatgaaggagttccaagctaagcatggttaaaactatattgttctattttaatatttgcaaccctttataattttctttatttgtgcctttgtgttctgttggtttatttgagttgagagagagtctgaatgacaacacttgagcatgtgttagtcctattgattcttgtgtacttctaggaagtttttatttttagaaatatggaaactattacttagtcctattagaagttcaatgaagaagtattttcaatttggtttttttggtttcattgttgagcagcactcactccattttatgagcaatatggtgaataagtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="22758" stop="24089"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23058" g_stop="23786" g_length="729"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="724" r_length="724" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="727" polyA_stop="737"/>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E549568" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549568" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23058" e_stop="23786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAAGTACACCTGTGATGTTGGATTACAAGATCCATGCTGAGAACAATTCGTTGTATAACACACCCCCTTGTTATGGTATTTACATGTGCGGGCTTGTGTTTGAAGATCTGTTGGATCAAGGTGGATTAGTAGAGGTTGAGAAGAAGAATCAGAAGAAAGCTCAGATTTTGTATGATGCTATTGATTCTAGCAATGGATTTTACAGGTGCCCAGTTGATAAATCAGTGAGGTCTTTGATGAATGTGCCATTTACATTGGCTAAACCAGAATTGGAAGCTGAATTTGTGAAGACAGCTGCTGGTGAGAAGATGGTGCAGCTTAAGGGACATAGGTCTGTTGGTGGAATGAGGGCTTCAATATACAATGCTATGCCTTTGGCTGGAGTTGAAAAGTTGGTAGCTTTCATGAAGGAGTTCCAAGCTAAGCATGGTTAAAACTATATTGTTCTATTTTAATATTTGCAACCCTTTATAATTTTCTGTTTTTTTGTGCCTTTATGTTCTGTTGGTTTATTTGAGTTGAGAGAGAGAGTCTGAATGACAACACTTGAGTATGTGTTAGTCCTATTGATTCTTGTGTACTTCTAGGAAGTTTTTGTTTTTAGAAATATGGAAACTATTACTTAGTCCTATTAGAAGTTTAATGAAGAAGTATTTTCAATTTGTTTTTTTTGGTTTCATTGTTGAGCAGCACTCGCTCCATTTTATGAGGAATATGGTTGAATAA</genome_strand>
        <mrna_strand>AGGAAAGTACACCTGTGATGTNGGATTACAAGATCCATGCTGAGAACAATTCGTTGTATAACACACCCCCTTGTTATGGTATTTACATGTGCGGGCTTGTGTTTGAAGATCTGTTGGATCAAGGTGGATTAGTAGAGGTTGAGAAGAAGAATCAGAAGAAAGCTCAGATTTTGTATGATGCTATTGATTCTAGTAATGGATTTTACAGGTGCCCAGTTGATAAATCAGTGAGATCTTTGATGAATGTGCCATTTACATTGGCTAAACCAGAACTGGAAGCTGAATTTGTGAAGACAGCTGCTGGTGAGAAGATGGTGCAGCTTAAGGGACATAGGTCTGTTGGTGGAATGAGGGCTTCAATATACAATGCTATGCCTTTGGCTGGAGTTGAAAAGTTGGTAGCTTTCATGAAGGAGTTCCAAGCTAAGCATGGTTAAAACTATATTGTTCTATTTTAATATTTGCAACCCTTTATAATTTTC--TTTATTTGTGCCTTTGTGTTCTGTTGGTTTATTTGAGTT--GAGAGAGAGTCTGAATGACAACACTTGAGCATGTGTTAGTCCTATTGATTCTTGTGTACTTCTAGGAAGTTTTTATTTTTAGAAATATGGAAACTATTACTTAGTCCTATTAGAAGTTCAATGAAGAAGTATTTTCAATTTGGTTTTTTTGGTTTCATTGTTGAGCAGCACTCACTCCATTTTATGAGCAATATGG-TGAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E607424" ref_strand="+" ref_description="SGN-E607424 [23389]">
      <seq>attgtataacacacccccttgttatgggattacatgtgtgggcttgtatttgaagatctgttggatcaagggtggattagtagaggttgagaagaagaatcagaagaaagctcagattttgtatgatgctattgattctagcaatggattttacaagtgcccagttgagaaatcagtgaggtctttgatgaatgtgccatttacattggctaaaccagaattggaagctgaatttgtgaagacagctgctggtgagaagatggtgcagcttaagggacataggtctgttggtggaatgagggcttcaatatacaatgctatgcctttggctggagttgaaaagttggtagctttcatgaaggagtccaagctaagcatggttaaaactatcttgttctggttatagtatttttcttctatgcttttggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="22811" stop="23820"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23110" g_stop="23508" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="398" r_length="398" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E607424" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E607424" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23110" e_stop="23508"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTATAACACACCCCCTTGTTATGGTATTTACATGTGCGGGCTTGTGTTTGAAGATCTGTTGGATCAA-GGTGGATTAGTAGAGGTTGAGAAGAAGAATCAGAAGAAAGCTCAGATTTTGTATGATGCTATTGATTCTAGCAATGGATTTTACAGGTGCCCAGTTGATAAATCAGTGAGGTCTTTGATGAATGTGCCATTTACATTGGCTAAACCAGAATTGGAAGCTGAATTTGTGAAGACAGCTGCTGGTGAGAAGATGGTGCAGCTTAAGGGACATAGGTCTGTTGGTGGAATGAGGGCTTCAATATACAATGCTATGCCTTTGGCTGGAGTTGAAAAGTTGGTAGCTTTCATGAAGGAGTTCCAAGCTAAGCATGGTTAAAACTATATTGTTCT</genome_strand>
        <mrna_strand>ATTGTATAACACACCCCCTTGTTATGGGA-TTACATGTGTGGGCTTGTATTTGAAGATCTGTTGGATCAAGGGTGGATTAGTAGAGGTTGAGAAGAAGAATCAGAAGAAAGCTCAGATTTTGTATGATGCTATTGATTCTAGCAATGGATTTTACAAGTGCCCAGTTGAGAAATCAGTGAGGTCTTTGATGAATGTGCCATTTACATTGGCTAAACCAGAATTGGAAGCTGAATTTGTGAAGACAGCTGCTGGTGAGAAGATGGTGCAGCTTAAGGGACATAGGTCTGTTGGTGGAATGAGGGCTTCAATATACAATGCTATGCCTTTGGCTGGAGTTGAAAAGTTGGTAGCTTTCATGAAGGAG-TCCAAGCTAAGCATGGTTAAAACTATCTTGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E713294" ref_strand="+" ref_description="SGN-E713294 [FB08BA06]">
      <seq>tgatgctattgattctagcaatggattttacaggtgcccagttgataaatcagtgaggtctttgatgaatgtgccatttacattggctaaaccagaattggaagctgaatttgtgaagacagctgctggtgagaagatggtgcagcttaagggacataggtctgttggtggaatgagggcttcaatatacaatgctatgcctttggctggagttgaaaagttggtagctttcatgaaggagttccaagctaagcatggttaaaactatattgttctattttaatatttgcaaccctttataattttctgtttttttgtgcctttatgttctgttggtttatttgagttgagagagagagtctgaatgacaacacttgagtatgtgttagtcctattgattcttgtgtacttctaggaagtttttgtttttagaaatatggaaactattacttagtcctattagaagtttaatgaagaagtattttcnaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="22933" stop="84932"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23233" g_stop="23723" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="491" r_length="491" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23724" i_stop="23912" i_length="189">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.854" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23913" g_stop="23928" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="507" r_length="16" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E713294" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23233" e_stop="23723"/>
          <exon e_start="23913" e_stop="23928"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGCTATTGATTCTAGCAATGGATTTTACAGGTGCCCAGTTGATAAATCAGTGAGGTCTTTGATGAATGTGCCATTTACATTGGCTAAACCAGAATTGGAAGCTGAATTTGTGAAGACAGCTGCTGGTGAGAAGATGGTGCAGCTTAAGGGACATAGGTCTGTTGGTGGAATGAGGGCTTCAATATACAATGCTATGCCTTTGGCTGGAGTTGAAAAGTTGGTAGCTTTCATGAAGGAGTTCCAAGCTAAGCATGGTTAAAACTATATTGTTCTATTTTAATATTTGCAACCCTTTATAATTTTCTGTTTTTTTGTGCCTTTATGTTCTGTTGGTTTATTTGAGTTGAGAGAGAGAGTCTGAATGACAACACTTGAGTATGTGTTAGTCCTATTGATTCTTGTGTACTTCTAGGAAGTTTTTGTTTTTAGAAATATGGAAACTATTACTTAGTCCTATTAGAAGTTTAATGAAGAAGTATTTTCAATTTGTTTTTTTTGGTTTCATTGTTGAGCAGCACTCGCTCCATTTTATGAGGAATATGGTTGAATAAGTAGGTTGAAATTTCTTCTTGTCATGTTATTTGTTGATGATAAGAGCAACTCACTTTTGAGATTCCCCTCTGTTTGACTTGTAATTTGTTGCATAGTGTCGAAAGAACCATTTTTTTGGTTGGAAGGGCGTATAAAGAGAAA</genome_strand>
        <mrna_strand>TGATGCTATTGATTCTAGCAATGGATTTTACAGGTGCCCAGTTGATAAATCAGTGAGGTCTTTGATGAATGTGCCATTTACATTGGCTAAACCAGAATTGGAAGCTGAATTTGTGAAGACAGCTGCTGGTGAGAAGATGGTGCAGCTTAAGGGACATAGGTCTGTTGGTGGAATGAGGGCTTCAATATACAATGCTATGCCTTTGGCTGGAGTTGAAAAGTTGGTAGCTTTCATGAAGGAGTTCCAAGCTAAGCATGGTTAAAACTATATTGTTCTATTTTAATATTTGCAACCCTTTATAATTTTCTGTTTTTTTGTGCCTTTATGTTCTGTTGGTTTATTTGAGTTGAGAGAGAGAGTCTGAATGACAACACTTGAGTATGTGTTAGTCCTATTGATTCTTGTGTACTTCTAGGAAGTTTTTGTTTTTAGAAATATGGAAACTATTACTTAGTCCTATTAGAAGTTTAATGAAGAAGTATTTTCNAAAA.............................................................................................................................................................................................AAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E446863" ref_strand="+" ref_description="SGN-E446863 [cSTA-23-E14]">
      <seq>ctagtctcgagttttttttttttttttttcaaattgaaaatactttttcattaaacttctaataggactaagtaatagtttccatattttaaaaaaaactcctagaagtacacaagaatcaataggactaacacatactcaagtgttgtcattcggactctctctcaactcaaataaaccaacagaacataaaggcccaaaaaagaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="-" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="84940" stop="23237"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24289" g_stop="24277" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="0.769"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24276" i_stop="24153" i_length="124">
            <donor d_prob="0.751" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24152" g_stop="24136" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="30" r_length="17" r_score="0.471"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24135" i_stop="23724" i_length="412">
            <donor d_prob="0.179" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23723" g_stop="23537" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="210" r_length="180" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="-" ref_id="SGN-E446863" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>217</cumulative_length_of_scored_exons>
        <coverage percentage="1.033" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E446863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24289" e_stop="24277"/>
          <exon e_start="24152" e_stop="24136"/>
          <exon e_start="23723" e_stop="23537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGTCTTGAGTTGTTAGTATTTAAATATCTAAAATCAGGAAGATTTAAACAACTTGGTTTGAACTTGTAGACTGCATCTTAAAATATGAAGCATTGACAATAGCACGTCACTTGTAAAGATTCCATCACTGTCAAGTTTACTAGTTGAGGTTGGTGAGATAGACAACGATTGGTTACTTTAATGTTATTAGTATTCGACAAATAAGTTTTACTAACTTGAATTTAGTATATTAAACTTCCAATACACTTCACTTTAAGAGGTTGAGGTTTGTAACTTATTCCACCAATACACATTCATCATCTACTTCTTTTACTCTTTTAAAAATAGTGCCAAGTTCTGAAACACAAATAATTGTGGCGTTTCTCTTTATACGCCCTTCCAACCAAAAAAATGGTTCTTTCGACACTATGCAACAAATTACAAGTCAAACAGAGGGGAATCTCAAAAGTGAGTTGCTCTTATCATCAACAAATAACATGACAAGAAGAAATTTCAACCTACTTATTCAACCATATTCCTCATAAAATGGAGCGAGTGCTGCTCAACAATGAAACCAAAAAAAACAAATTGAAAATACTTCTTCATTAAACTTCTAATAGGACTAAGTAATAGTTTCCATATTTCTAAAAACAAAAACTTCCTAGAAGTACACAAGAATCAATAGGACTAACACATACTCAAGTGTTGTCATTCAGACTCTCTCTCTCAACTCAAATAAACCAACAGAACATAAAGGCACAAAAAAACAGAA</genome_strand>
        <mrna_strand>CTAGTCTCGAGTT............................................................................................................................TTTTTTTTTTTTTTTTC............................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGAAAATACTTTTTCATTAAACTTCTAATAGGACTAAGTAATAGTTTCCATATTT-T--AAA-AAAAAC-TCCTAGAAGTACACAAGAATCAATAGGACTAACACATACTCAAGTGTTGTCATTCGGA--CTCTCTCTCAACTCAAATAAACCAACAGAACATAAAGGCCCAAAAAAGAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E542415" ref_strand="-" ref_description="SGN-E542415 [TUS-63-L9]">
      <seq>tgcagaggtagcactaaagcatcttcaaactctaatttggaagctgacacaaaggcccaagagttgtctgtcaaagttgctgaagtacaaaataagatggatcaggaaataaaagaacgtgatgagaagtactcagagctagactcgaagttcaacagacttcacaaacgggcaaagcagcgtattcaagaggtgcaaaaggaaaaagatgatcttgaggcccagtttcgtgatgtcaatgagaaatctgagcgcgcatcctcgcaattatctgcattgcagcaagagttggagcgcagtagacaacacgctcaggaggcactgaaagcaagcccgtcaaaagatacatcaggatcggggagctcactgttttctagattctcattctcttaacagccaatgagggctgcagagatgcttcccaaatgttgtcttatccagcttcagtagatagtctgtagcagacgtggaaggagagatacagtagaggaatgttttgtgttcttatgtaattaacaaagaaatgcaaaagaagaacaaaacacaaaaaatgagtaggcatcccttgtcgttcttcacacgatatgtatatcaaaggtatttcgttcttcctttttttgtttaattgagtgcagagagagaaggaagagcacatttgatagaaattgtaaaatttttgcgtaaggaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="-" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="35100" stop="24324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34800" g_stop="34715" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34714" i_stop="34513" i_length="202">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34512" g_stop="34397" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="201" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34396" i_stop="33691" i_length="706">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33690" g_stop="33564" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="328" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33563" i_stop="24986" i_length="8578">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24985" g_stop="24624" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="690" r_length="362" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="-" ref_id="SGN-E542415" ref_strand="-">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542415" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="34800" e_stop="34715"/>
          <exon e_start="34512" e_stop="34397"/>
          <exon e_start="33690" e_stop="33564"/>
          <exon e_start="24985" e_stop="24624"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGAGGTAGCACTAAAGCATCTTCAAACTCTATATTTGGAAGCTGACACAAAGGCCCAAGAGTTGTCTGTCAAAGTTGCTGAAGGTTGTGATTTGCTTTGACTTCCATTTTCTTCTTCATGTTTGTTGAATTCAACATCAATATGGAACTCGGATTTTATGATAAGTTCTAAATGTTGGTGATGTACTTCCATTGTTAGTTGCAGATTTTTTGGTTTTCCTTTTTTAGTTTCAGTTGACAAAGAAGATATGCTATTCTGAAGTCTATAAATGGTTTGTTTGAATAGTACAAAATAAGATGGATCAGGAAATAAAAGAACGTGATGAGAAGTACTCAGAGCTAGACTCGAAGTTCAACAGACTTCACAAACGGGCAAAGCAGCGTATTCAAGAGGTGCAAAAGGTAAATTCTGAGACTATCCTCTTTTATTTGATATGTCTGATGTCTTTCATCAATTTTTCATCAAAACTTGGTCAACTTTACAAAAGGTGTTTTACTTCTACAAAACCTTCCGAGTTCTAGCAAAACCTTGTATAGATAACAATATATTCTACAACAACAAATGAAACTGGAGAAAATTTTTGATTATAGATGGTTTTCATCTCCTTAAAATGTTACTACTCTTTTCTTTCTGAATCGTCCGAAGATGCAAATGAGGCTTCACTTCCATTTATCTTTCTTCCTTATATCCATCTTCATTGCCCTTCAGCTTCTTGCTGCTTTTGCACTAGGAGTCACCCATGATATATTGAATAGGGAGTACCGATTTTAATTATGACATGAAACTACCTGCTAAAATAGACTTGAAAACTGCATTTTATCTTAATGTCCAAATGTAGTTCCTGTAGGATTGGGTGACTTTTGGTGAGGACCATATTTTGTAGGTTTTTCCTTTTCTGGTATACCACTTGTATAAATCCATGATGACCTTGTTATTATCAATGAAATCTGTTACTTGATAGAAAAGATGCAATTAAATTTGGACATTAAGATAAAAATGTGGTGGACAAGTTATTCAAGTTGTACATTAATTGCTTACATCTTTTTTAATTTTTAAAGAAAGAATTACGATAATTAACTATTTTTTGTTGCAATTCTGTTTCTTTAGGAAAAAGATGATCTTGAGGCCCAGTTTCGTGATGTCAATGAGAAATCTGAGCGCGCATCCTCGCAATTATCTGCATTGCAGCAAGAGTTGGAGCGCAGTAGACAACACGCTCAGGAGGCACTGAAAGCAATGGATTTGGATAGGCAACAGTTAAGAAGTACAAACAACAAGTATGTCCTCCTTGTGAACTTAGTTGACACTGCTTCTTCACAAGTGATTTTGATGGATTATCTGTTTATTATTTGGATTAGATTTGAAGAAAAAGAAAAAAAGAACAAAGAGATATCATCAGAGCTACCTGTCGAACAACTTCTTGATTGAGCTACAAGATTACCCCTTGAGATCCTCAAGTGTCCATATACTAAATGAGAAAATAACCTTTTAACATAATCACCTAACATTTTGTCAATTTATCTCATCTTTTTCACGTTCGAATTGCTTGCAGTAATGATATGATATGTTTTTTCTCTTTTTTGACGATGTCAAGTCTTTATTAAATAGTTGCATCAGGCTTTGGAATTGTCAGTTTTGTTTAGATACCAAGCTAGTTCATGTCAACTCGTCCCAGATGTTCTATCGATTTTGTCATATCAATAATTCAGTATTGCTTTTCTAAATGTGAAATTTCTTTTGGATTTTCTTGTCATAAGATGCTTGATTACTTATTTTCAGTACACAAATTTGTTAATTTTTAGGCTCAGAGACAACATTGAAGAGCTGCGCCGTTCCTTGGCACCAAAAGAGAATGCTCTGGAGGCATCACAACAGGCACTTCTAGAGAAAGAGCAGGTGTGCAGCTGTGAGAAAGTTCACTTATTGTATCAAGTTAAATGCCTATAAATAGATAGTGTTGATTGTTTTATGGCTTCCTGAGTCAATCTTATGCCCTTACCTGTCTTCTAAGTATTTCTTAAATCCTTTTGGTATTTGTATTCAATTTTATTTACATAGGTGGTGAAGCTCTAAGTTGAAGCAGGAATATACGCTGGCACATGGGCATTACCACCTGACGCGCACACACCCGTGAAAAAAAAGGGTAGAAAAGAAGAATTAGTTGAAAGTTTTCAAACTAGTAAATAGACAAGTAGATCTCCAAAAACCCATTAAGAAATAGAGCAAGTTGATTTGGCAGTCTGGCATTTATAACTGATCTCTCCCTCCTTATATTTGTTTCTTTTGTAAGAAAATTGTTGGTAAGTTAACTATTCAGTTTTTTTTGTTCCCTAGCAAAAGGGCATCTTTAAAGCTCTTTTAATTTGTAAAAAGATTTGTCTAAGACATTGCTAGGAGAGTATAATTTGTCAGCTGCCGCTCTAAGATGGTGCCCGAGAAAGCTTGTTTTGAGCATCTTTAAAGCTCTTTTAATTTGTAAAAAGATTTGTCTAAGGAGACATTGCTAGAAGAGTCTGCTGCGGCTCTAAGATGGTGCCCGAGCAAGCTTGTTTTGAGAAAGGCAAGATGAAAAATAAAAAAAAAATAATTTAAGAAGAAAATTAACTAAAAAATAAAGCAGTGGACTGCAAATAACTGAAATTAGTGAGATAATTCTCATGTCAATCAAGTTAAGAACTGTTTTAAATCTCTAAATAAGCAATTTTAAGTTTCTAATTCAGATACTTGCTGGTTTACACGTACTAAATTCTAGTTTAATGTACTTGTTCACTAGAATATTCATGCATAATGTTTTTTTAAAAACAAATTTTTGCATCACTTTATCATCAATATTTATAATTTTACTCACTTCAAGATAGAGCCCGTCGGTAGTCGCGTTAGCTAGCCAGCTTATTAGTTTCTGATTTTAGTGTTGTTTCCTTGTGTCATTACGGATAAATGTATTTTATTCTTTTGAGATCTAGACAATGTTAATGATAATTGTTCTCATTTGAGCAAGATATCCAGTAAAAAGAATCCATCTTCCGGGTTACTTTTCTAGTATTTCCTTACTTATTGCACTCCATGTGTGGTGACGTTTTATGATTTCTTGTGTTTTGCATTTAGTCATCTAAAATAGATTGCCAGTTGCCTAGCGGGGTTCGGATTCAAACTAGTGTGAATCTCTGCAGACTTCAAGTGTAGATGGAGTGGACAGAGTTTTATTCCAGAAGCAAAGACACGTTTTATCTTTTAAATGGACTTGTGTGCTTTCTCGCTTTAAAATGGATAAGATTAAATTGAAGTTTATCAAGGTCTACAGAGATGCTTATGGTATTTTTCAAGGAGAAATAGATAATAATTTGAGGACCAGGAATCTCATGTTGACCGAAAAGGCTAGAAATAAAATGGTTTTTCAATTATGAAACCCAGGATACGTGTAAAGGTTCATGGCAAATTGTGGATATCTTTGGCCTATGTCTAAGTTCTCTCTTGATACAGCTCTTGAACTTAGAGGATCTTTGCTGAACCTTGGTTTTGCAGAAGTTAGAAGAGATGCAAGCATTACTGCAGGCAGCAGATGAGAAGAGACAAGCTTCAATTGAAGACCTCTCTTCAAAGCATCAGAAGGTACAAAGGCAGTATTACTGTTGCCCTGGTGCTTTAGCTTCCTTCTTTAGTTCTGACCATTTCTTAAATAAATTCTCTTTTACATCAGCAAAAAGAGAGTCTGGAAGCCCAAATTGCTGAGGCATTGGCTGAAAGAAGCAAAGCAGCTGAAACAATCTCATCTCTGCGGGTAATGATTCTATTCCCAATTGTACACAGAGATGGAATAATGCAAGCGATATAAACTTCATCTTGCTCATATATATTTTGATAATTTAATGAGGTACCGATGATCTGAAAAATGACATCTAATGTATTTCTTGCTCAGTGGATTTTTGGTTCCACAACGTTCTCAGGATCCTGTTTATTATGTATTAGTTGTTCAATTTAGTATCTTCTGGATATTTGGAGCTCTGATCGTGCATTGTTCCTTGTAGACTGTGGTTGCAGAGAAGGAGTTTAAGATTGCAGAGATGGATGCAGCTTCCACTGGTGAAGCAGCAAGACTTAGAGCTGCTTTTGAAACAGTTAAAGGAGACATTGTTCATCTGAAAAGTGAACAAGTATGAGCTAACACTTCTCAATTTGACCTTAAAATTCATTCGGAACGATTCTTTTCGGAGCATGTCGGTCATTCAAACATATATTATTCCAAGACTATGAGTTGCTAAAGTTCCGCTCCTTTTTTGAGATTGCCAATCTGAAAAGGAAGTTTCTGCTTCACTGGCAGTCAAGCACCAGATCACAGGCTTAGTTGTTGGGAATCCTAAATTATACTTGTTACTCTCTGCTAACCAATATGTCTTTACCAACGCATGCCTTTCTAATTGAATAGAGGTAAAAGTGGTGGATAAAAGTTCAAAATGTTAATCTTATAAAGAATATGTTGCAGTTGCTCCTTAGCAGTCATCTTAATCTTGATAAAGAGCCTGTTTGGGAATATAAATATATCCTTGGAATTGCCCGTTTTGATTAACAATTTGATATGTCCCCATAAGGGTCGATTCCCAATCTCCCCTGATGTAGTCTTTCATAGTAAAATTTGATCGTATGCGCATTATAACTTGTGCTTTGGTCAAGTGTTTTGTGTAATGGAGCAAATAGCTGCTCTAATTAATTTGGCATAAACATTTTCTAAATGATTTATTCTCGTCTCTGGTAAGATGTTTAATCTGCTTTGTTTGGTTCTTACTTCTGTAATGTTTTGATGCGTTTAGGAGAAAGAAAAAGAGAGTTGGGAAACCACCTGCCATTCACTCAGAACAAAGCTGGAGATTGCTGAGAGTAACTGCATCCGTGCCGAGATTGAAGCGGCCAAATTTAGAAGTATAATTCTGTATACTGGTTAGTTACCTTGTTTAGGCGATGAATTTGGAGCTCATACTTGTATTGACATTGTAGGTCAACTGGAGTCACAGTTATCTGCTCAGTCCCAGGTATTAAACTCAAAAGAGGCTGAATTGATGGCGGCCAAAGAAGAGGTGATCTCTTATTTAACTTATCTGTATTTCTCCTCTCACAAATGTTTAGGCCCCATTTGTTTTTATAAGATTATGACGTCGTAATGTGTATACACGTTTAGATATTTAATATTGTATCTAGATCTTAACGCTGAAAAACTAACATTGTTTTTTCAGCATCTGAATGTGGATAATTTATCTTTATTTTAAAGCTAATTAATAGATAGAATTTCAAGTAAATTACTACGAATAAATTTGTATCCACAAAATGTTGGAAAATGTTTATTTACGGGGAGTTAAATAAATTTTTTATTTGATGAATCATACTCTAAAAAAAACTAGAAAGAAAGGTAGGTGGTGATCGGCAATAATAGTTGTAAGGTGGTGGTGGTCATGATTGTATTGGGGAGATTGCCTATGATGGTTGTGCAATGGTGTCCGGTTTTGGTCAGATAGAAGTTAGTGGTAGAGGTGGTTGGTACTGGTGGTTTGCGAAGGAGGCGGTTAGTGGTGGTGACTAGTTGTGAAGGTGCTTGGTGATTGTGGTGGTGACCGGCTATGGTGGTTGCGCAATGGAGGCTGGTGGTGGAGGTAATTGGTTAGTGGCAGTAGTTGACTGTTGTGGAGATGGTTAGTCGTTGGTATCAATGCATATAGAACTTGTATTGATGTCTAGATATCGAGATCCTCCTGAGGTGACAGATTAATTGGATATTGGCATTCTCCCAACTTCTTGGCAAAAAGATTATATATCAATTGGATCTATGCACTTCTCTTATTTTCTTCTTGAAATATGTGCACCAATTGCATATTTGACATTTTACTAAAGGAATCATTTGAAGCAAGAAAAGAAACAAAGAATCTGCAAGTGACACATATAATTTTTTTCGCCTTGACTGTATGGTATATACTGATTTAAAGTTATTGAGACTTCAGGTAAAGATTTTTCTTCCAGTTGCTAGACTGTGCAATGATAGAATCTGGCAAGTTTAGGATGTTGAATGGCTCTTTTTAAGATTAATCTAGGATGCTGAATAGTGTGCCATTGACTTCAATTATTCCTTAAGAGTTTGGTACTAGGGAGTTTGTTGCATGAAAAGTGGCTAATATAATTATGGGAAAGAAGTAGCAAAGGTTGACACAAATATTCTTTGTTTTATGTATCTCATGATTTTCTCTTCAATGGTCACTTGCAGATCAATCGCACTCAAAGTGAGTTTTCATCTTACAAGGCTCGTGCTCACGCACTTCTCCAGCGAAAGGATGCTGAATTGGCTGCTGCTAGGGACAGCGAACAACTTAAAGCACTGGAGGAAGCATTGAAGGTATATGCTTTTGGGTGTAACTAGTGAAATGCTTTGGCTTAATAGTTTAACATTAAGGTCATTTAATTGTTGCTAAGACATCAAAAAATTTGCTCTTTCAGGAAGTGGAGAAAGAGGTAATGTCAGTCTCTTCTGAAAGGGATAGAGCCCTTCAAGATCTAAAGAGCACCTTAATTAATCATGAGAAGGAACTTTCGGACAGGTAATCTGAGTTTGATGACTTGTTAGATGTTCACCTGAACACAAATTATACGCAGTTCATTTTTGGGGTGTTTTTTCACAGATTAAACTCACAAACATTGACATGGACACACTCTTCAGTTCATTTACACCCTCGGGCAAAATAGTTTTAAATCTAACTTGTAGTAGTACAGAGTTTTTACAGATTTGATGTAGCTTTCATTTGCTGAAAGAGAATGAATTGACACACTTCTCCATTAAATCATTTCCAGAGATGAAGCTCTTCGTGCTACAGAGCAACGGATCAGAAGCATGGAAATGAAGTTCAATTCTGCTATTTCTGCTCACCAAAAAGAGAAGGAAGCATGGGAAATAAGCCTTCAAAATGTAGAAGAAACATGGCGATGTAATTTCTTAGGATGATATAATAATCAGCTTTCTATTCTTGAATTGCCATTTATTCAGCTTCCAAATGGAAAACTAATTCTAGATACTGCTTTGCAGTGAAATGTGATGCATTTAAAGCAGAGAGTGTGGTTACCTCTGGTGATAATGTTCAAAAAGAACTAGATGACCTCAAACAAAGCTGTAAAAAACTGAAGGTGTGATTTATAATTATCAATATCATCATAACACTTTTTAGTTTGGTGACACTGAGTTCTTTAACTTGTAGGAAGAGCTTGATTCTTTTCGTGACCTTGCTGATAAGATGATTGAGGAGAAGGACAATGAAATCTCTAGACTTCTAGACGATAACGAGAACCTTCGCCACAAACTTCAGTCTGAATTTTTAGTAAGTGTGGAGCAGTCTCCAATCACCTATTCATGAATCTGCTTGAGCAATCACCTAGTTAACATGTGTATTTAAGCATTCTTTTAAAATTGTGATTTTTCTTCTGCAAATATCAGGCCGATCGCAATGGCAATTCCAATACAGGTATGAAGATCTTCAGCACCTTTTAGCTTATTCTACAGTTCAAAATGATATTCTTTGATAGCTGCTTCAGTGACTAATATTGCTCTTTGAAATGATTGTACAGTATATGACAAGCAAGATCCTCTGAATTCGACTACCTCAGCTGCTGATCAGCAGATTCTGGTATGGACAATTTTCTAGTTACATTACTGTGCAATATTTTCATCAGTTACTGCAAAGGGGAAAAAGAAAATCAAAGAATGAGACAGAGATTAGTACAAGGGGCAACAGTTTTAAAGTCCAACCCAAACATGGTCTGGCATGCTTTATGCTTTAGACATGTCCTTTTTCGCCTTAATATACACCATCGGGACACCTTTAGCCTCCAAACGCCTCAAGAGAACATCCCTTGGGACTTTGTCATAGGCCTTTTCAAGGTCAATGAACGCCATATGAAAGTCCCTCTTCCTTTCAATATACTTCTCCACCAATCTCCGCACAAGGTGGATGGCTTCAGTAGTCGAAATCCCCGGCATGAACCCAAATTGATCCTCAATAATGGACACTCCTTTACTGTTACCTTCTCAAAAAAAAAAAAAAAATTGACACTCCTTTCCTCACCCTCATCTCCTCTACTCTCTCCGAGACCTTCGTAGTGTGGCTTAACAATTCGATACCCCTCTAATTGTTATAGTTTGGATATCACCGTCGTTCTTGTACAATGGAACCATTATACTTCATCTCCACTCGTCGGGCATTTTTTTCCGTCTTGAAAATAGTATTAAACTACCCAGTCAAAACCACTCGACACCTGCTTATCTGTTATATATATGAAAGAAAAAAAAGTAGTATTTGAAGTAAAGTCGAAAAAGAATATTTGGAAATTGAAGTCGTCTCTGGACATGCATTTAACCTGGGAAAAAGTTGAAATTTTGTGAATGGATGTGGGTTTTCACTTTAATTTAAAAAACCCATCTTCAATTTTTTCCAGAAAATCAGTCCAATGTATAACTAAACAGTGATTTGAAAGAAATATAATGAAAAAAAGGAAAAATAATCCGTGGACAAACCGCTCCTTAGTTAAGAACATTAGTTTTTAGCATTCAGAGACTTCATTTCTGTCTCACGCCACTACTTAAAACTTCTTGACGCTTCAGGTCTTGGCGAGACAACAAGCACAAAGAGAAGAAGAGCTTGCTCAGTCACAACGTCACATTCTAGCCCTTCAAGTAAGTTATTTGCTCCGAGAACATCAATATTCTTTAGAGATAGTTCCCTCATTAGAGTCTGATGTCTTGATTCAGGAGGAGATAGAAGAGCTTGAACGTGAAAATCGTCTCCACAGCCAGCAGGTATGTCTTTAAATAAAAGTCATGTGTCTGTCATGGCTAATTCTCTTCTTTCTTAGGGACTGGAGGGTGGCTTGAGTTGTTTAGCCATGGGCATAATGTTTGAGTGGGCTTAGGCAGCTGGTTCTTGGCTTAGACAATCATATACTATGCTGTCCTTTTACTTGGACTTCTTCTGATTTGTATTCCCTTACAAGTTTGCCTTAATGAGTGCAGGAAGCTAAGTTGAAAGAGGAGCTTAGGAATATGGATAGATCACAGAAGAGGGAAGGGGTAGATCTGACGTATCTTAAGAATGTCATTTTAAAACTTCTCGAGACAGGTAACTTTTCAGTGTTGCAGTGAAAAGGTTTAAAATTCAGGATTTTTTTAGTTGAACTAAATGCTTCCGTAGGAAATTATTTACATCATAAGTTGCTTGTGATAAATATTTCACAGGTGAAGTGGAGGCTCTATTACCTGTGGTTGCAATGCTTCTTCAGTTCAGTCCTGAGGAGGTGATGTTCTTGTTTCCAGTAGTAAACTACTGTTTTCATTTCTAAAATATTGGTGATCGTTATGACAATATATCTCAGTAATATTCATGAATCTATTAGGCCTACTCCGTTAAAATAAATACATTTAAGACTTATTGTGACATGGTACCTTTTAGCTCATATGGCAAGAGCAGGTGTATGTATTTGCACTGCAGGTATAGAGAACTTAATTAATCATCTTATTTTGCTATTAATTGCAAAATCTGGTTCTATCAAATGATTAGAAATTGAAAATGTGCTATAACTTTATTAGATTTCAAATAAATTAAATTGGAAGGCATATGCAGACAAATCTTTTTGTATTTATCGTTCTCATGCTGATATCTGTTGATTATGATATATCAATAGTGAGTAAATGTATTAGAGTGTAATGTAACCTGAAAATCTCATGAGTCTACTGATGCATTTGCAGATGCGGAAGTGCCAACAAGCCTATCGCTCCTCCATAGAAGCTCAAGCAAGCCCGTCAAAAGATACATCAGGATCGGGGAGCTCACTGTTTTCTAGATTCTCATTCTCTTAACAGCCAATGAGGGCTGCAGAGATGCTTCCCAAATGTTGTCTTATCCAGCTTCAGTAGATAGTCTGTAGCAGACGTGGAAGGAGAGATACAGTAGAGGAATGTTTTGTGTTCTTATGTAATTAACAAAGAAATGCAAAAGAAGAACAAAACACAAAAAATGAGTAGGCATCCCTTGTCGTTCTTCACACGATATGTATATCAAAGGTATTTCGTTCTTCCTTTTTTTGTTTAATTGAGTGCAGAGAGAGAAGGAAGAGCACATTTGATAGAAATTGTAAAATTTTTGCGTAAGGAAAC</genome_strand>
        <mrna_strand>TGCAGAGGTAGCACTAAAGCATCTTCAAACTCTA-ATTTGGAAGCTGACACAAAGGCCCAAGAGTTGTCTGTCAAAGTTGCTGAAG..........................................................................................................................................................................................................TACAAAATAAGATGGATCAGGAAATAAAAGAACGTGATGAGAAGTACTCAGAGCTAGACTCGAAGTTCAACAGACTTCACAAACGGGCAAAGCAGCGTATTCAAGAGGTGCAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAAGATGATCTTGAGGCCCAGTTTCGTGATGTCAATGAGAAATCTGAGCGCGCATCCTCGCAATTATCTGCATTGCAGCAAGAGTTGGAGCGCAGTAGACAACACGCTCAGGAGGCACTGAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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GTTCTTATGTAATTAACAAAGAAATGCAAAAGAAGAACAAAACACAAAAAATGAGTAGGCATCCCTTGTCGTTCTTCACACGATATGTATATCAAAGGTATTTCGTTCTTCCTTTTTTTGTTTAATTGAGTGCAGAGAGAGAAGGAAGAGCACATTTGATAGAAATTGTAAAATTTTTGCGTAAGGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E302161" ref_strand="-" ref_description="SGN-E302161 [cLEW-19-F10]">
      <seq>gtcaaagttgctgaagtacaaaataagatggatcaggaaataaaagaacgtgatgagaagtactcagagctagactcgaagttcaacagacttcacaaacgggcaaagcagcgtattcaagaggtgcaaaaggaaaaagatgatcttgaggcccagtttcgtgatgtcaatgagaaatctgagcgcgcatcctcgcaattatctgcattgcagcaagagttggagcgcagtagacaacacgctcaggaggcactgaaagcaagcccgtcaaaagatacatcaggatcggggagctcactgttttctagattctcattctcttaacagccaatgagggctgcagagatgcttcccaaatgttgtcttatccagcttcagtagatagtctgtagcagacgtggaaggagagatacagtagaggaatgttttgtgttcttatgtaattaacaaagaaatgcaaaagaagaacaaaacacaaaaaatgagtaggcatcccttgtcgttcttcacacgatatgtatatcaaaggtatttcgttcttcctttttttgtttaattgagtgcagagagagaaggaagagcacatttgatagaaattgtaaaatttttgcgtaaggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="-" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="34819" stop="24325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34730" g_stop="34715" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34714" i_stop="34513" i_length="202">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34512" g_stop="34397" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="132" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34396" i_stop="33691" i_length="706">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33690" g_stop="33564" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="259" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33563" i_stop="24986" i_length="8578">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24985" g_stop="24625" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="620" r_length="361" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="-" ref_id="SGN-E302161" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302161" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="34730" e_stop="34715"/>
          <exon e_start="34512" e_stop="34397"/>
          <exon e_start="33690" e_stop="33564"/>
          <exon e_start="24985" e_stop="24625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAAAGTTGCTGAAGGTTGTGATTTGCTTTGACTTCCATTTTCTTCTTCATGTTTGTTGAATTCAACATCAATATGGAACTCGGATTTTATGATAAGTTCTAAATGTTGGTGATGTACTTCCATTGTTAGTTGCAGATTTTTTGGTTTTCCTTTTTTAGTTTCAGTTGACAAAGAAGATATGCTATTCTGAAGTCTATAAATGGTTTGTTTGAATAGTACAAAATAAGATGGATCAGGAAATAAAAGAACGTGATGAGAAGTACTCAGAGCTAGACTCGAAGTTCAACAGACTTCACAAACGGGCAAAGCAGCGTATTCAAGAGGTGCAAAAGGTAAATTCTGAGACTATCCTCTTTTATTTGATATGTCTGATGTCTTTCATCAATTTTTCATCAAAACTTGGTCAACTTTACAAAAGGTGTTTTACTTCTACAAAACCTTCCGAGTTCTAGCAAAACCTTGTATAGATAACAATATATTCTACAACAACAAATGAAACTGGAGAAAATTTTTGATTATAGATGGTTTTCATCTCCTTAAAATGTTACTACTCTTTTCTTTCTGAATCGTCCGAAGATGCAAATGAGGCTTCACTTCCATTTATCTTTCTTCCTTATATCCATCTTCATTGCCCTTCAGCTTCTTGCTGCTTTTGCACTAGGAGTCACCCATGATATATTGAATAGGGAGTACCGATTTTAATTATGACATGAAACTACCTGCTAAAATAGACTTGAAAACTGCATTTTATCTTAATGTCCAAATGTAGTTCCTGTAGGATTGGGTGACTTTTGGTGAGGACCATATTTTGTAGGTTTTTCCTTTTCTGGTATACCACTTGTATAAATCCATGATGACCTTGTTATTATCAATGAAATCTGTTACTTGATAGAAAAGATGCAATTAAATTTGGACATTAAGATAAAAATGTGGTGGACAAGTTATTCAAGTTGTACATTAATTGCTTACATCTTTTTTAATTTTTAAAGAAAGAATTACGATAATTAACTATTTTTTGTTGCAATTCTGTTTCTTTAGGAAAAAGATGATCTTGAGGCCCAGTTTCGTGATGTCAATGAGAAATCTGAGCGCGCATCCTCGCAATTATCTGCATTGCAGCAAGAGTTGGAGCGCAGTAGACAACACGCTCAGGAGGCACTGAAAGCAATGGATTTGGATAGGCAACAGTTAAGAAGTACAAACAACAAGTATGTCCTCCTTGTGAACTTAGTTGACACTGCTTCTTCACAAGTGATTTTGATGGATTATCTGTTTATTATTTGGATTAGATTTGAAGAAAAAGAAAAAAAGAACAAAGAGATATCATCAGAGCTACCTGTCGAACAACTTCTTGATTGAGCTACAAGATTACCCCTTGAGATCCTCAAGTGTCCATATACTAAATGAGAAAATAACCTTTTAACATAATCACCTAACATTTTGTCAATTTATCTCATCTTTTTCACGTTCGAATTGCTTGCAGTAATGATATGATATGTTTTTTCTCTTTTTTGACGATGTCAAGTCTTTATTAAATAGTTGCATCAGGCTTTGGAATTGTCAGTTTTGTTTAGATACCAAGCTAGTTCATGTCAACTCGTCCCAGATGTTCTATCGATTTTGTCATATCAATAATTCAGTATTGCTTTTCTAAATGTGAAATTTCTTTTGGATTTTCTTGTCATAAGATGCTTGATTACTTATTTTCAGTACACAAATTTGTTAATTTTTAGGCTCAGAGACAACATTGAAGAGCTGCGCCGTTCCTTGGCACCAAAAGAGAATGCTCTGGAGGCATCACAACAGGCACTTCTAGAGAAAGAGCAGGTGTGCAGCTGTGAGAAAGTTCACTTATTGTATCAAGTTAAATGCCTATAAATAGATAGTGTTGATTGTTTTATGGCTTCCTGAGTCAATCTTATGCCCTTACCTGTCTTCTAAGTATTTCTTAAATCCTTTTGGTATTTGTATTCAATTTTATTTACATAGGTGGTGAAGCTCTAAGTTGAAGCAGGAATATACGCTGGCACATGGGCATTACCACCTGACGCGCACACACCCGTGAAAAAAAAGGGTAGAAAAGAAGAATTAGTTGAAAGTTTTCAAACTAGTAAATAGACAAGTAGATCTCCAAAAACCCATTAAGAAATAGAGCAAGTTGATTTGGCAGTCTGGCATTTATAACTGATCTCTCCCTCCTTATATTTGTTTCTTTTGTAAGAAAATTGTTGGTAAGTTAACTATTCAGTTTTTTTTGTTCCCTAGCAAAAGGGCATCTTTAAAGCTCTTTTAATTTGTAAAAAGATTTGTCTAAGACATTGCTAGGAGAGTATAATTTGTCAGCTGCCGCTCTAAGATGGTGCCCGAGAAAGCTTGTTTTGAGCATCTTTAAAGCTCTTTTAATTTGTAAAAAGATTTGTCTAAGGAGACATTGCTAGAAGAGTCTGCTGCGGCTCTAAGATGGTGCCCGAGCAAGCTTGTTTTGAGAAAGGCAAGATGAAAAATAAAAAAAAAATAATTTAAGAAGAAAATTAACTAAAAAATAAAGCAGTGGACTGCAAATAACTGAAATTAGTGAGATAATTCTCATGTCAATCAAGTTAAGAACTGTTTTAAATCTCTAAATAAGCAATTTTAAGTTTCTAATTCAGATACTTGCTGGTTTACACGTACTAAATTCTAGTTTAATGTACTTGTTCACTAGAATATTCATGCATAATGTTTTTTTAAAAACAAATTTTTGCATCACTTTATCATCAATATTTATAATTTTACTCACTTCAAGATAGAGCCCGTCGGTAGTCGCGTTAGCTAGCCAGCTTATTAGTTTCTGATTTTAGTGTTGTTTCCTTGTGTCATTACGGATAAATGTATTTTATTCTTTTGAGATCTAGACAATGTTAATGATAATTGTTCTCATTTGAGCAAGATATCCAGTAAAAAGAATCCATCTTCCGGGTTACTTTTCTAGTATTTCCTTACTTATTGCACTCCATGTGTGGTGACGTTTTATGATTTCTTGTGTTTTGCATTTAGTCATCTAAAATAGATTGCCAGTTGCCTAGCGGGGTTCGGATTCAAACTAGTGTGAATCTCTGCAGACTTCAAGTGTAGATGGAGTGGACAGAGTTTTATTCCAGAAGCAAAGACACGTTTTATCTTTTAAATGGACTTGTGTGCTTTCTCGCTTTAAAATGGATAAGATTAAATTGAAGTTTATCAAGGTCTACAGAGATGCTTATGGTATTTTTCAAGGAGAAATAGATAATAATTTGAGGACCAGGAATCTCATGTTGACCGAAAAGGCTAGAAATAAAATGGTTTTTCAATTATGAAACCCAGGATACGTGTAAAGGTTCATGGCAAATTGTGGATATCTTTGGCCTATGTCTAAGTTCTCTCTTGATACAGCTCTTGAACTTAGAGGATCTTTGCTGAACCTTGGTTTTGCAGAAGTTAGAAGAGATGCAAGCATTACTGCAGGCAGCAGATGAGAAGAGACAAGCTTCAATTGAAGACCTCTCTTCAAAGCATCAGAAGGTACAAAGGCAGTATTACTGTTGCCCTGGTGCTTTAGCTTCCTTCTTTAGTTCTGACCATTTCTTAAATAAATTCTCTTTTACATCAGCAAAAAGAGAGTCTGGAAGCCCAAATTGCTGAGGCATTGGCTGAAAGAAGCAAAGCAGCTGAAACAATCTCATCTCTGCGGGTAATGATTCTATTCCCAATTGTACACAGAGATGGAATAATGCAAGCGATATAAACTTCATCTTGCTCATATATATTTTGATAATTTAATGAGGTACCGATGATCTGAAAAATGACATCTAATGTATTTCTTGCTCAGTGGATTTTTGGTTCCACAACGTTCTCAGGATCCTGTTTATTATGTATTAGTTGTTCAATTTAGTATCTTCTGGATATTTGGAGCTCTGATCGTGCATTGTTCCTTGTAGACTGTGGTTGCAGAGAAGGAGTTTAAGATTGCAGAGATGGATGCAGCTTCCACTGGTGAAGCAGCAAGACTTAGAGCTGCTTTTGAAACAGTTAAAGGAGACATTGTTCATCTGAAAAGTGAACAAGTATGAGCTAACACTTCTCAATTTGACCTTAAAATTCATTCGGAACGATTCTTTTCGGAGCATGTCGGTCATTCAAACATATATTATTCCAAGACTATGAGTTGCTAAAGTTCCGCTCCTTTTTTGAGATTGCCAATCTGAAAAGGAAGTTTCTGCTTCACTGGCAGTCAAGCACCAGATCACAGGCTTAGTTGTTGGGAATCCTAAATTATACTTGTTACTCTCTGCTAACCAATATGTCTTTACCAACGCATGCCTTTCTAATTGAATAGAGGTAAAAGTGGTGGATAAAAGTTCAAAATGTTAATCTTATAAAGAATATGTTGCAGTTGCTCCTTAGCAGTCATCTTAATCTTGATAAAGAGCCTGTTTGGGAATATAAATATATCCTTGGAATTGCCCGTTTTGATTAACAATTTGATATGTCCCCATAAGGGTCGATTCCCAATCTCCCCTGATGTAGTCTTTCATAGTAAAATTTGATCGTATGCGCATTATAACTTGTGCTTTGGTCAAGTGTTTTGTGTAATGGAGCAAATAGCTGCTCTAATTAATTTGGCATAAACATTTTCTAAATGATTTATTCTCGTCTCTGGTAAGATGTTTAATCTGCTTTGTTTGGTTCTTACTTCTGTAATGTTTTGATGCGTTTAGGAGAAAGAAAAAGAGAGTTGGGAAACCACCTGCCATTCACTCAGAACAAAGCTGGAGATTGCTGAGAGTAACTGCATCCGTGCCGAGATTGAAGCGGCCAAATTTAGAAGTATAATTCTGTATACTGGTTAGTTACCTTGTTTAGGCGATGAATTTGGAGCTCATACTTGTATTGACATTGTAGGTCAACTGGAGTCACAGTTATCTGCTCAGTCCCAGGTATTAAACTCAAAAGAGGCTGAATTGATGGCGGCCAAAGAAGAGGTGATCTCTTATTTAACTTATCTGTATTTCTCCTCTCACAAATGTTTAGGCCCCATTTGTTTTTATAAGATTATGACGTCGTAATGTGTATACACGTTTAGATATTTAATATTGTATCTAGATCTTAACGCTGAAAAACTAACATTGTTTTTTCAGCATCTGAATGTGGATAATTTATCTTTATTTTAAAGCTAATTAATAGATAGAATTTCAAGTAAATTACTACGAATAAATTTGTATCCACAAAATGTTGGAAAATGTTTATTTACGGGGAGTTAAATAAATTTTTTATTTGATGAATCATACTCTAAAAAAAACTAGAAAGAAAGGTAGGTGGTGATCGGCAATAATAGTTGTAAGGTGGTGGTGGTCATGATTGTATTGGGGAGATTGCCTATGATGGTTGTGCAATGGTGTCCGGTTTTGGTCAGATAGAAGTTAGTGGTAGAGGTGGTTGGTACTGGTGGTTTGCGAAGGAGGCGGTTAGTGGTGGTGACTAGTTGTGAAGGTGCTTGGTGATTGTGGTGGTGACCGGCTATGGTGGTTGCGCAATGGAGGCTGGTGGTGGAGGTAATTGGTTAGTGGCAGTAGTTGACTGTTGTGGAGATGGTTAGTCGTTGGTATCAATGCATATAGAACTTGTATTGATGTCTAGATATCGAGATCCTCCTGAGGTGACAGATTAATTGGATATTGGCATTCTCCCAACTTCTTGGCAAAAAGATTATATATCAATTGGATCTATGCACTTCTCTTATTTTCTTCTTGAAATATGTGCACCAATTGCATATTTGACATTTTACTAAAGGAATCATTTGAAGCAAGAAAAGAAACAAAGAATCTGCAAGTGACACATATAATTTTTTTCGCCTTGACTGTATGGTATATACTGATTTAAAGTTATTGAGACTTCAGGTAAAGATTTTTCTTCCAGTTGCTAGACTGTGCAATGATAGAATCTGGCAAGTTTAGGATGTTGAATGGCTCTTTTTAAGATTAATCTAGGATGCTGAATAGTGTGCCATTGACTTCAATTATTCCTTAAGAGTTTGGTACTAGGGAGTTTGTTGCATGAAAAGTGGCTAATATAATTATGGGAAAGAAGTAGCAAAGGTTGACACAAATATTCTTTGTTTTATGTATCTCATGATTTTCTCTTCAATGGTCACTTGCAGATCAATCGCACTCAAAGTGAGTTTTCATCTTACAAGGCTCGTGCTCACGCACTTCTCCAGCGAAAGGATGCTGAATTGGCTGCTGCTAGGGACAGCGAACAACTTAAAGCACTGGAGGAAGCATTGAAGGTATATGCTTTTGGGTGTAACTAGTGAAATGCTTTGGCTTAATAGTTTAACATTAAGGTCATTTAATTGTTGCTAAGACATCAAAAAATTTGCTCTTTCAGGAAGTGGAGAAAGAGGTAATGTCAGTCTCTTCTGAAAGGGATAGAGCCCTTCAAGATCTAAAGAGCACCTTAATTAATCATGAGAAGGAACTTTCGGACAGGTAATCTGAGTTTGATGACTTGTTAGATGTTCACCTGAACACAAATTATACGCAGTTCATTTTTGGGGTGTTTTTTCACAGATTAAACTCACAAACATTGACATGGACACACTCTTCAGTTCATTTACACCCTCGGGCAAAATAGTTTTAAATCTAACTTGTAGTAGTACAGAGTTTTTACAGATTTGATGTAGCTTTCATTTGCTGAAAGAGAATGAATTGACACACTTCTCCATTAAATCATTTCCAGAGATGAAGCTCTTCGTGCTACAGAGCAACGGATCAGAAGCATGGAAATGAAGTTCAATTCTGCTATTTCTGCTCACCAAAAAGAGAAGGAAGCATGGGAAATAAGCCTTCAAAATGTAGAAGAAACATGGCGATGTAATTTCTTAGGATGATATAATAATCAGCTTTCTATTCTTGAATTGCCATTTATTCAGCTTCCAAATGGAAAACTAATTCTAGATACTGCTTTGCAGTGAAATGTGATGCATTTAAAGCAGAGAGTGTGGTTACCTCTGGTGATAATGTTCAAAAAGAACTAGATGACCTCAAACAAAGCTGTAAAAAACTGAAGGTGTGATTTATAATTATCAATATCATCATAACACTTTTTAGTTTGGTGACACTGAGTTCTTTAACTTGTAGGAAGAGCTTGATTCTTTTCGTGACCTTGCTGATAAGATGATTGAGGAGAAGGACAATGAAATCTCTAGACTTCTAGACGATAACGAGAACCTTCGCCACAAACTTCAGTCTGAATTTTTAGTAAGTGTGGAGCAGTCTCCAATCACCTATTCATGAATCTGCTTGAGCAATCACCTAGTTAACATGTGTATTTAAGCATTCTTTTAAAATTGTGATTTTTCTTCTGCAAATATCAGGCCGATCGCAATGGCAATTCCAATACAGGTATGAAGATCTTCAGCACCTTTTAGCTTATTCTACAGTTCAAAATGATATTCTTTGATAGCTGCTTCAGTGACTAATATTGCTCTTTGAAATGATTGTACAGTATATGACAAGCAAGATCCTCTGAATTCGACTACCTCAGCTGCTGATCAGCAGATTCTGGTATGGACAATTTTCTAGTTACATTACTGTGCAATATTTTCATCAGTTACTGCAAAGGGGAAAAAGAAAATCAAAGAATGAGACAGAGATTAGTACAAGGGGCAACAGTTTTAAAGTCCAACCCAAACATGGTCTGGCATGCTTTATGCTTTAGACATGTCCTTTTTCGCCTTAATATACACCATCGGGACACCTTTAGCCTCCAAACGCCTCAAGAGAACATCCCTTGGGACTTTGTCATAGGCCTTTTCAAGGTCAATGAACGCCATATGAAAGTCCCTCTTCCTTTCAATATACTTCTCCACCAATCTCCGCACAAGGTGGATGGCTTCAGTAGTCGAAATCCCCGGCATGAACCCAAATTGATCCTCAATAATGGACACTCCTTTACTGTTACCTTCTCAAAAAAAAAAAAAAAATTGACACTCCTTTCCTCACCCTCATCTCCTCTACTCTCTCCGAGACCTTCGTAGTGTGGCTTAACAATTCGATACCCCTCTAATTGTTATAGTTTGGATATCACCGTCGTTCTTGTACAATGGAACCATTATACTTCATCTCCACTCGTCGGGCATTTTTTTCCGTCTTGAAAATAGTATTAAACTACCCAGTCAAAACCACTCGACACCTGCTTATCTGTTATATATATGAAAGAAAAAAAAGTAGTATTTGAAGTAAAGTCGAAAAAGAATATTTGGAAATTGAAGTCGTCTCTGGACATGCATTTAACCTGGGAAAAAGTTGAAATTTTGTGAATGGATGTGGGTTTTCACTTTAATTTAAAAAACCCATCTTCAATTTTTTCCAGAAAATCAGTCCAATGTATAACTAAACAGTGATTTGAAAGAAATATAATGAAAAAAAGGAAAAATAATCCGTGGACAAACCGCTCCTTAGTTAAGAACATTAGTTTTTAGCATTCAGAGACTTCATTTCTGTCTCACGCCACTACTTAAAACTTCTTGACGCTTCAGGTCTTGGCGAGACAACAAGCACAAAGAGAAGAAGAGCTTGCTCAGTCACAACGTCACATTCTAGCCCTTCAAGTAAGTTATTTGCTCCGAGAACATCAATATTCTTTAGAGATAGTTCCCTCATTAGAGTCTGATGTCTTGATTCAGGAGGAGATAGAAGAGCTTGAACGTGAAAATCGTCTCCACAGCCAGCAGGTATGTCTTTAAATAAAAGTCATGTGTCTGTCATGGCTAATTCTCTTCTTTCTTAGGGACTGGAGGGTGGCTTGAGTTGTTTAGCCATGGGCATAATGTTTGAGTGGGCTTAGGCAGCTGGTTCTTGGCTTAGACAATCATATACTATGCTGTCCTTTTACTTGGACTTCTTCTGATTTGTATTCCCTTACAAGTTTGCCTTAATGAGTGCAGGAAGCTAAGTTGAAAGAGGAGCTTAGGAATATGGATAGATCACAGAAGAGGGAAGGGGTAGATCTGACGTATCTTAAGAATGTCATTTTAAAACTTCTCGAGACAGGTAACTTTTCAGTGTTGCAGTGAAAAGGTTTAAAATTCAGGATTTTTTTAGTTGAACTAAATGCTTCCGTAGGAAATTATTTACATCATAAGTTGCTTGTGATAAATATTTCACAGGTGAAGTGGAGGCTCTATTACCTGTGGTTGCAATGCTTCTTCAGTTCAGTCCTGAGGAGGTGATGTTCTTGTTTCCAGTAGTAAACTACTGTTTTCATTTCTAAAATATTGGTGATCGTTATGACAATATATCTCAGTAATATTCATGAATCTATTAGGCCTACTCCGTTAAAATAAATACATTTAAGACTTATTGTGACATGGTACCTTTTAGCTCATATGGCAAGAGCAGGTGTATGTATTTGCACTGCAGGTATAGAGAACTTAATTAATCATCTTATTTTGCTATTAATTGCAAAATCTGGTTCTATCAAATGATTAGAAATTGAAAATGTGCTATAACTTTATTAGATTTCAAATAAATTAAATTGGAAGGCATATGCAGACAAATCTTTTTGTATTTATCGTTCTCATGCTGATATCTGTTGATTATGATATATCAATAGTGAGTAAATGTATTAGAGTGTAATGTAACCTGAAAATCTCATGAGTCTACTGATGCATTTGCAGATGCGGAAGTGCCAACAAGCCTATCGCTCCTCCATAGAAGCTCAAGCAAGCCCGTCAAAAGATACATCAGGATCGGGGAGCTCACTGTTTTCTAGATTCTCATTCTCTTAACAGCCAATGAGGGCTGCAGAGATGCTTCCCAAATGTTGTCTTATCCAGCTTCAGTAGATAGTCTGTAGCAGACGTGGAAGGAGAGATACAGTAGAGGAATGTTTTGTGTTCTTATGTAATTAACAAAGAAATGCAAAAGAAGAACAAAACACAAAAAATGAGTAGGCATCCCTTGTCGTTCTTCACACGATATGTATATCAAAGGTATTTCGTTCTTCCTTTTTTTGTTTAATTGAGTGCAGAGAGAGAAGGAAGAGCACATTTGATAGAAATTGTAAAATTTTTGCGTAAGGAAA</genome_strand>
        <mrna_strand>GTCAAAGTTGCTGAAG..........................................................................................................................................................................................................TACAAAATAAGATGGATCAGGAAATAAAAGAACGTGATGAGAAGTACTCAGAGCTAGACTCGAAGTTCAACAGACTTCACAAACGGGCAAAGCAGCGTATTCAAGAGGTGCAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAAGATGATCTTGAGGCCCAGTTTCGTGATGTCAATGAGAAATCTGAGCGCGCATCCTCGCAATTATCTGCATTGCAGCAAGAGTTGGAGCGCAGTAGACAACACGCTCAGGAGGCACTGAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGCCCGTCAAAAGATACATCAGGATCGGGGAGCTCACTGTTTTCTAGATTCTCATTCTCTTAACAGCCAATGAGGGCTGCAGAGATGCTTCCCAAATGTTGTCTTATCCAGCTTCAGTAGATAGTCTGTAGCAGACGTGGAAGGAGAGATACAGTAGAGGAATGTTTTGTGTTCTTATGTAATTAACAAAGAAATGCAAAAGAAGAACAAAACACAAAAAATGAGTAGGCATCCCTTGTCGTTCTTCACACGATATGTATATCAAAGGTATTTCGTTCTTCCTTTTTTTGTTTAATTGAGTGCAGAGAGAGAAGGAAGAGCACATTTGATAGAAATTGTAAAATTTTTGCGTAAGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E703700" ref_strand="+" ref_description="SGN-E703700 [FA22AH09]">
      <seq>atctaaagagcaccttaattaatcatgagaaggaactttcggacagagatgaagctcttcgtgctacagagcaacggatcagaagcatggaaatgaagttcaattctgctatttctgctcaccaaaaagagaaggaagcatgggaaataagccttcaaaatgtagaagaaacatggcgattgaaatgtgatgcatttaaagcagagagtgtggttacctctggtgataatgttcaaaaagaactagatgacctcaaacaaagctgtaaaaaactgaaggaagagcttgattcttttcgtgaccttgctgataagatgattgaggagaaggacaatgaaatctctagacttctagacgataacgagaaccttcgccacaaacttcagtctgaatttttagccgatcgcaatggcaattccaatacagtatatgacaagcaagatcctctgaattcgactacctcagctgctgatcagcagattctggtcttggcgagacaacaagcacaaagagaagaagagcttgctcagtcacaacgtcacattctagcccttcaagaggagatagaagagcttgaacgtgaaaatcgtctccacagccagcaggaagctaagttgaaagaggagcttaggaatatggatagatcacagaagagggaaggggtagatctgacgtatcttaagaatgtcattttaaaacttctcgagacaggtgaagtggaggctctattacctgtggttgcaatgcttcttcagttcagtcctgaggagatgcggaagtgccaacaagcctatcgctcctccatagaagctcaagcaagcccgtcaaaagatacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="-" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="28568" stop="24664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28268" g_stop="28223" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28222" i_stop="27973" i_length="250">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.903" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27972" g_stop="27839" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="180" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27838" i_stop="27741" i_length="98">
            <donor d_prob="0.678" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27740" g_stop="27643" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="278" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27642" i_stop="27572" i_length="71">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27571" g_stop="27452" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="398" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27451" i_stop="27336" i_length="116">
            <donor d_prob="0.222" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27335" g_stop="27308" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="426" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="27307" i_stop="27205" i_length="103">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="27204" g_stop="27146" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="485" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="27145" i_stop="26172" i_length="974">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.749" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="26171" g_stop="26100" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="557" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="26099" i_stop="26025" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.227" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="26024" g_stop="25977" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="605" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="25976" i_stop="25764" i_length="213">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="25763" g_stop="25658" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="606" r_stop="711" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="25657" i_stop="25542" i_length="116">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="25541" g_stop="25483" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="712" r_stop="770" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="25482" i_stop="25032" i_length="451">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="25031" g_stop="24964" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="771" r_stop="838" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="-" ref_id="SGN-E703700" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>838</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703700" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28268" e_stop="28223"/>
          <exon e_start="27972" e_stop="27839"/>
          <exon e_start="27740" e_stop="27643"/>
          <exon e_start="27571" e_stop="27452"/>
          <exon e_start="27335" e_stop="27308"/>
          <exon e_start="27204" e_stop="27146"/>
          <exon e_start="26171" e_stop="26100"/>
          <exon e_start="26024" e_stop="25977"/>
          <exon e_start="25763" e_stop="25658"/>
          <exon e_start="25541" e_stop="25483"/>
          <exon e_start="25031" e_stop="24964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTAAAGAGCACCTTAATTAATCATGAGAAGGAACTTTCGGACAGGTAATCTGAGTTTGATGACTTGTTAGATGTTCACCTGAACACAAATTATACGCAGTTCATTTTTGGGGTGTTTTTTCACAGATTAAACTCACAAACATTGACATGGACACACTCTTCAGTTCATTTACACCCTCGGGCAAAATAGTTTTAAATCTAACTTGTAGTAGTACAGAGTTTTTACAGATTTGATGTAGCTTTCATTTGCTGAAAGAGAATGAATTGACACACTTCTCCATTAAATCATTTCCAGAGATGAAGCTCTTCGTGCTACAGAGCAACGGATCAGAAGCATGGAAATGAAGTTCAATTCTGCTATTTCTGCTCACCAAAAAGAGAAGGAAGCATGGGAAATAAGCCTTCAAAATGTAGAAGAAACATGGCGATGTAATTTCTTAGGATGATATAATAATCAGCTTTCTATTCTTGAATTGCCATTTATTCAGCTTCCAAATGGAAAACTAATTCTAGATACTGCTTTGCAGTGAAATGTGATGCATTTAAAGCAGAGAGTGTGGTTACCTCTGGTGATAATGTTCAAAAAGAACTAGATGACCTCAAACAAAGCTGTAAAAAACTGAAGGTGTGATTTATAATTATCAATATCATCATAACACTTTTTAGTTTGGTGACACTGAGTTCTTTAACTTGTAGGAAGAGCTTGATTCTTTTCGTGACCTTGCTGATAAGATGATTGAGGAGAAGGACAATGAAATCTCTAGACTTCTAGACGATAACGAGAACCTTCGCCACAAACTTCAGTCTGAATTTTTAGTAAGTGTGGAGCAGTCTCCAATCACCTATTCATGAATCTGCTTGAGCAATCACCTAGTTAACATGTGTATTTAAGCATTCTTTTAAAATTGTGATTTTTCTTCTGCAAATATCAGGCCGATCGCAATGGCAATTCCAATACAGGTATGAAGATCTTCAGCACCTTTTAGCTTATTCTACAGTTCAAAATGATATTCTTTGATAGCTGCTTCAGTGACTAATATTGCTCTTTGAAATGATTGTACAGTATATGACAAGCAAGATCCTCTGAATTCGACTACCTCAGCTGCTGATCAGCAGATTCTGGTATGGACAATTTTCTAGTTACATTACTGTGCAATATTTTCATCAGTTACTGCAAAGGGGAAAAAGAAAATCAAAGAATGAGACAGAGATTAGTACAAGGGGCAACAGTTTTAAAGTCCAACCCAAACATGGTCTGGCATGCTTTATGCTTTAGACATGTCCTTTTTCGCCTTAATATACACCATCGGGACACCTTTAGCCTCCAAACGCCTCAAGAGAACATCCCTTGGGACTTTGTCATAGGCCTTTTCAAGGTCAATGAACGCCATATGAAAGTCCCTCTTCCTTTCAATATACTTCTCCACCAATCTCCGCACAAGGTGGATGGCTTCAGTAGTCGAAATCCCCGGCATGAACCCAAATTGATCCTCAATAATGGACACTCCTTTACTGTTACCTTCTCAAAAAAAAAAAAAAAATTGACACTCCTTTCCTCACCCTCATCTCCTCTACTCTCTCCGAGACCTTCGTAGTGTGGCTTAACAATTCGATACCCCTCTAATTGTTATAGTTTGGATATCACCGTCGTTCTTGTACAATGGAACCATTATACTTCATCTCCACTCGTCGGGCATTTTTTTCCGTCTTGAAAATAGTATTAAACTACCCAGTCAAAACCACTCGACACCTGCTTATCTGTTATATATATGAAAGAAAAAAAAGTAGTATTTGAAGTAAAGTCGAAAAAGAATATTTGGAAATTGAAGTCGTCTCTGGACATGCATTTAACCTGGGAAAAAGTTGAAATTTTGTGAATGGATGTGGGTTTTCACTTTAATTTAAAAAACCCATCTTCAATTTTTTCCAGAAAATCAGTCCAATGTATAACTAAACAGTGATTTGAAAGAAATATAATGAAAAAAAGGAAAAATAATCCGTGGACAAACCGCTCCTTAGTTAAGAACATTAGTTTTTAGCATTCAGAGACTTCATTTCTGTCTCACGCCACTACTTAAAACTTCTTGACGCTTCAGGTCTTGGCGAGACAACAAGCACAAAGAGAAGAAGAGCTTGCTCAGTCACAACGTCACATTCTAGCCCTTCAAGTAAGTTATTTGCTCCGAGAACATCAATATTCTTTAGAGATAGTTCCCTCATTAGAGTCTGATGTCTTGATTCAGGAGGAGATAGAAGAGCTTGAACGTGAAAATCGTCTCCACAGCCAGCAGGTATGTCTTTAAATAAAAGTCATGTGTCTGTCATGGCTAATTCTCTTCTTTCTTAGGGACTGGAGGGTGGCTTGAGTTGTTTAGCCATGGGCATAATGTTTGAGTGGGCTTAGGCAGCTGGTTCTTGGCTTAGACAATCATATACTATGCTGTCCTTTTACTTGGACTTCTTCTGATTTGTATTCCCTTACAAGTTTGCCTTAATGAGTGCAGGAAGCTAAGTTGAAAGAGGAGCTTAGGAATATGGATAGATCACAGAAGAGGGAAGGGGTAGATCTGACGTATCTTAAGAATGTCATTTTAAAACTTCTCGAGACAGGTAACTTTTCAGTGTTGCAGTGAAAAGGTTTAAAATTCAGGATTTTTTTAGTTGAACTAAATGCTTCCGTAGGAAATTATTTACATCATAAGTTGCTTGTGATAAATATTTCACAGGTGAAGTGGAGGCTCTATTACCTGTGGTTGCAATGCTTCTTCAGTTCAGTCCTGAGGAGGTGATGTTCTTGTTTCCAGTAGTAAACTACTGTTTTCATTTCTAAAATATTGGTGATCGTTATGACAATATATCTCAGTAATATTCATGAATCTATTAGGCCTACTCCGTTAAAATAAATACATTTAAGACTTATTGTGACATGGTACCTTTTAGCTCATATGGCAAGAGCAGGTGTATGTATTTGCACTGCAGGTATAGAGAACTTAATTAATCATCTTATTTTGCTATTAATTGCAAAATCTGGTTCTATCAAATGATTAGAAATTGAAAATGTGCTATAACTTTATTAGATTTCAAATAAATTAAATTGGAAGGCATATGCAGACAAATCTTTTTGTATTTATCGTTCTCATGCTGATATCTGTTGATTATGATATATCAATAGTGAGTAAATGTATTAGAGTGTAATGTAACCTGAAAATCTCATGAGTCTACTGATGCATTTGCAGATGCGGAAGTGCCAACAAGCCTATCGCTCCTCCATAGAAGCTCAAGCAAGCCCGTCAAAAGATACATC</genome_strand>
        <mrna_strand>ATCTAAAGAGCACCTTAATTAATCATGAGAAGGAACTTTCGGACAG..........................................................................................................................................................................................................................................................AGATGAAGCTCTTCGTGCTACAGAGCAACGGATCAGAAGCATGGAAATGAAGTTCAATTCTGCTATTTCTGCTCACCAAAAAGAGAAGGAAGCATGGGAAATAAGCCTTCAAAATGTAGAAGAAACATGGCGAT..................................................................................................TGAAATGTGATGCATTTAAAGCAGAGAGTGTGGTTACCTCTGGTGATAATGTTCAAAAAGAACTAGATGACCTCAAACAAAGCTGTAAAAAACTGAAG.......................................................................GAAGAGCTTGATTCTTTTCGTGACCTTGCTGATAAGATGATTGAGGAGAAGGACAATGAAATCTCTAGACTTCTAGACGATAACGAGAACCTTCGCCACAAACTTCAGTCTGAATTTTTA....................................................................................................................GCCGATCGCAATGGCAATTCCAATACAG.......................................................................................................TATATGACAAGCAAGATCCTCTGAATTCGACTACCTCAGCTGCTGATCAGCAGATTCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTGGCGAGACAACAAGCACAAAGAGAAGAAGAGCTTGCTCAGTCACAACGTCACATTCTAGCCCTTCAA...........................................................................GAGGAGATAGAAGAGCTTGAACGTGAAAATCGTCTCCACAGCCAGCAG.....................................................................................................................................................................................................................GAAGCTAAGTTGAAAGAGGAGCTTAGGAATATGGATAGATCACAGAAGAGGGAAGGGGTAGATCTGACGTATCTTAAGAATGTCATTTTAAAACTTCTCGAGACAG....................................................................................................................GTGAAGTGGAGGCTCTATTACCTGTGGTTGCAATGCTTCTTCAGTTCAGTCCTGAGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGGAAGTGCCAACAAGCCTATCGCTCCTCCATAGAAGCTCAAGCAAGCCCGTCAAAAGATACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E369386" ref_strand="+" ref_description="SGN-E369386 [TUS-23-A23]">
      <seq>tgagaaggaactttcggacagagatgaagctcttcgtgctacagagcaacggatcagaagcatggaaatgaagttcaattctgctatttctgctcaccaaaaagagaaggaagcatgggaaataagccttcaaaatgtagaagaaacatggcgattgaaatgtgatgcatttaaagcagagagtgtggttacctctggtgataatgttcaaaaagaactagatgacctcaaacaaagctgtaaaaaactgaaggaagagcttgattcttttcgtgaccttgctgataagatgattgaggagaaggacaatgaaatctctagacttctagacgataacgagaaccttcgccacaaacttcagtctgaatttttagccgatcgcaatggcaattccaatacagtatatgacaagcaagatcctctgaattcgactacctcagctgctgatcagcagattctggtcttggcgagacaacaagcacaaagagaagaagagcttgctcagtcacaacgtcacattctagcccttcaagaggagatagaagagcttgaacgtgaaaatcgtctccacagccagcaggaagctaagttgaaagaggagcttaggaatatggatagatcacagaagagggaaggggtagatctgacgtatcttaagaatgtcattttaaaacttctcgagacaggtgaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="-" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="28543" stop="25352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28243" g_stop="28223" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28222" i_stop="27973" i_length="250">
            <donor d_prob="0.895" d_score="0.00"/>
            <acceptor a_prob="0.903" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27972" g_stop="27839" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="155" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27838" i_stop="27741" i_length="98">
            <donor d_prob="0.678" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27740" g_stop="27643" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="253" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27642" i_stop="27572" i_length="71">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27571" g_stop="27452" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="373" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27451" i_stop="27336" i_length="116">
            <donor d_prob="0.222" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27335" g_stop="27308" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="401" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="27307" i_stop="27205" i_length="103">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="27204" g_stop="27146" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="460" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="27145" i_stop="26172" i_length="974">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.749" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="26171" g_stop="26100" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="532" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="26099" i_stop="26025" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.227" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="26024" g_stop="25977" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="580" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="25976" i_stop="25764" i_length="213">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="25763" g_stop="25658" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="686" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="25657" i_stop="25542" i_length="116">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="25541" g_stop="25535" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="687" r_stop="693" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="-" ref_id="SGN-E369386" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28243" e_stop="28223"/>
          <exon e_start="27972" e_stop="27839"/>
          <exon e_start="27740" e_stop="27643"/>
          <exon e_start="27571" e_stop="27452"/>
          <exon e_start="27335" e_stop="27308"/>
          <exon e_start="27204" e_stop="27146"/>
          <exon e_start="26171" e_stop="26100"/>
          <exon e_start="26024" e_stop="25977"/>
          <exon e_start="25763" e_stop="25658"/>
          <exon e_start="25541" e_stop="25535"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAAGGAACTTTCGGACAGGTAATCTGAGTTTGATGACTTGTTAGATGTTCACCTGAACACAAATTATACGCAGTTCATTTTTGGGGTGTTTTTTCACAGATTAAACTCACAAACATTGACATGGACACACTCTTCAGTTCATTTACACCCTCGGGCAAAATAGTTTTAAATCTAACTTGTAGTAGTACAGAGTTTTTACAGATTTGATGTAGCTTTCATTTGCTGAAAGAGAATGAATTGACACACTTCTCCATTAAATCATTTCCAGAGATGAAGCTCTTCGTGCTACAGAGCAACGGATCAGAAGCATGGAAATGAAGTTCAATTCTGCTATTTCTGCTCACCAAAAAGAGAAGGAAGCATGGGAAATAAGCCTTCAAAATGTAGAAGAAACATGGCGATGTAATTTCTTAGGATGATATAATAATCAGCTTTCTATTCTTGAATTGCCATTTATTCAGCTTCCAAATGGAAAACTAATTCTAGATACTGCTTTGCAGTGAAATGTGATGCATTTAAAGCAGAGAGTGTGGTTACCTCTGGTGATAATGTTCAAAAAGAACTAGATGACCTCAAACAAAGCTGTAAAAAACTGAAGGTGTGATTTATAATTATCAATATCATCATAACACTTTTTAGTTTGGTGACACTGAGTTCTTTAACTTGTAGGAAGAGCTTGATTCTTTTCGTGACCTTGCTGATAAGATGATTGAGGAGAAGGACAATGAAATCTCTAGACTTCTAGACGATAACGAGAACCTTCGCCACAAACTTCAGTCTGAATTTTTAGTAAGTGTGGAGCAGTCTCCAATCACCTATTCATGAATCTGCTTGAGCAATCACCTAGTTAACATGTGTATTTAAGCATTCTTTTAAAATTGTGATTTTTCTTCTGCAAATATCAGGCCGATCGCAATGGCAATTCCAATACAGGTATGAAGATCTTCAGCACCTTTTAGCTTATTCTACAGTTCAAAATGATATTCTTTGATAGCTGCTTCAGTGACTAATATTGCTCTTTGAAATGATTGTACAGTATATGACAAGCAAGATCCTCTGAATTCGACTACCTCAGCTGCTGATCAGCAGATTCTGGTATGGACAATTTTCTAGTTACATTACTGTGCAATATTTTCATCAGTTACTGCAAAGGGGAAAAAGAAAATCAAAGAATGAGACAGAGATTAGTACAAGGGGCAACAGTTTTAAAGTCCAACCCAAACATGGTCTGGCATGCTTTATGCTTTAGACATGTCCTTTTTCGCCTTAATATACACCATCGGGACACCTTTAGCCTCCAAACGCCTCAAGAGAACATCCCTTGGGACTTTGTCATAGGCCTTTTCAAGGTCAATGAACGCCATATGAAAGTCCCTCTTCCTTTCAATATACTTCTCCACCAATCTCCGCACAAGGTGGATGGCTTCAGTAGTCGAAATCCCCGGCATGAACCCAAATTGATCCTCAATAATGGACACTCCTTTACTGTTACCTTCTCAAAAAAAAAAAAAAAATTGACACTCCTTTCCTCACCCTCATCTCCTCTACTCTCTCCGAGACCTTCGTAGTGTGGCTTAACAATTCGATACCCCTCTAATTGTTATAGTTTGGATATCACCGTCGTTCTTGTACAATGGAACCATTATACTTCATCTCCACTCGTCGGGCATTTTTTTCCGTCTTGAAAATAGTATTAAACTACCCAGTCAAAACCACTCGACACCTGCTTATCTGTTATATATATGAAAGAAAAAAAAGTAGTATTTGAAGTAAAGTCGAAAAAGAATATTTGGAAATTGAAGTCGTCTCTGGACATGCATTTAACCTGGGAAAAAGTTGAAATTTTGTGAATGGATGTGGGTTTTCACTTTAATTTAAAAAACCCATCTTCAATTTTTTCCAGAAAATCAGTCCAATGTATAACTAAACAGTGATTTGAAAGAAATATAATGAAAAAAAGGAAAAATAATCCGTGGACAAACCGCTCCTTAGTTAAGAACATTAGTTTTTAGCATTCAGAGACTTCATTTCTGTCTCACGCCACTACTTAAAACTTCTTGACGCTTCAGGTCTTGGCGAGACAACAAGCACAAAGAGAAGAAGAGCTTGCTCAGTCACAACGTCACATTCTAGCCCTTCAAGTAAGTTATTTGCTCCGAGAACATCAATATTCTTTAGAGATAGTTCCCTCATTAGAGTCTGATGTCTTGATTCAGGAGGAGATAGAAGAGCTTGAACGTGAAAATCGTCTCCACAGCCAGCAGGTATGTCTTTAAATAAAAGTCATGTGTCTGTCATGGCTAATTCTCTTCTTTCTTAGGGACTGGAGGGTGGCTTGAGTTGTTTAGCCATGGGCATAATGTTTGAGTGGGCTTAGGCAGCTGGTTCTTGGCTTAGACAATCATATACTATGCTGTCCTTTTACTTGGACTTCTTCTGATTTGTATTCCCTTACAAGTTTGCCTTAATGAGTGCAGGAAGCTAAGTTGAAAGAGGAGCTTAGGAATATGGATAGATCACAGAAGAGGGAAGGGGTAGATCTGACGTATCTTAAGAATGTCATTTTAAAACTTCTCGAGACAGGTAACTTTTCAGTGTTGCAGTGAAAAGGTTTAAAATTCAGGATTTTTTTAGTTGAACTAAATGCTTCCGTAGGAAATTATTTACATCATAAGTTGCTTGTGATAAATATTTCACAGGTGAAGT</genome_strand>
        <mrna_strand>TGAGAAGGAACTTTCGGACAG..........................................................................................................................................................................................................................................................AGATGAAGCTCTTCGTGCTACAGAGCAACGGATCAGAAGCATGGAAATGAAGTTCAATTCTGCTATTTCTGCTCACCAAAAAGAGAAGGAAGCATGGGAAATAAGCCTTCAAAATGTAGAAGAAACATGGCGAT..................................................................................................TGAAATGTGATGCATTTAAAGCAGAGAGTGTGGTTACCTCTGGTGATAATGTTCAAAAAGAACTAGATGACCTCAAACAAAGCTGTAAAAAACTGAAG.......................................................................GAAGAGCTTGATTCTTTTCGTGACCTTGCTGATAAGATGATTGAGGAGAAGGACAATGAAATCTCTAGACTTCTAGACGATAACGAGAACCTTCGCCACAAACTTCAGTCTGAATTTTTA....................................................................................................................GCCGATCGCAATGGCAATTCCAATACAG.......................................................................................................TATATGACAAGCAAGATCCTCTGAATTCGACTACCTCAGCTGCTGATCAGCAGATTCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTGGCGAGACAACAAGCACAAAGAGAAGAAGAGCTTGCTCAGTCACAACGTCACATTCTAGCCCTTCAA...........................................................................GAGGAGATAGAAGAGCTTGAACGTGAAAATCGTCTCCACAGCCAGCAG.....................................................................................................................................................................................................................GAAGCTAAGTTGAAAGAGGAGCTTAGGAATATGGATAGATCACAGAAGAGGGAAGGGGTAGATCTGACGTATCTTAAGAATGTCATTTTAAAACTTCTCGAGACAG....................................................................................................................GTGAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E471603" ref_strand="+" ref_description="SGN-E471603 [cSTB-24-H19]">
      <seq>tttttctgcccaccaaaaagagaaggaagcatgggaaataagccttcaaaatgtagaagaaacatggcgattgaaatgtgatgcatttaaagcagagagtgtggttacctctggtgataatgttcaaaaagaactagatgacctcaaacaaagctgcaaaaaattgaaggaagagcttgattcttttcgtgaccttgctgataagatgattgaggagaaggacaatgagatctctagacttctagatgataatgagaaccttcgccacaaacttcagtctgaattttttgctgatcacaatggcaattccaatacagtatatgacaagcaggatcctctgaattcgactacctcagatgctgatcagcagattctagttttggcgagacaacaagcacaaagagaagaagagcttgctcagtcacaacgtcacattctagcccttcaagaggagatagaagagctcgaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="-" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="28209" stop="25701"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27909" g_stop="27839" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27838" i_stop="27741" i_length="98">
            <donor d_prob="0.678" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27740" g_stop="27643" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="169" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27642" i_stop="27572" i_length="71">
            <donor d_prob="0.911" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27571" g_stop="27452" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="289" r_length="120" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27451" i_stop="27336" i_length="116">
            <donor d_prob="0.222" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27335" g_stop="27308" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="317" r_length="28" r_score="0.929"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27307" i_stop="27205" i_length="103">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.924" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27204" g_stop="27146" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="376" r_length="59" r_score="0.949"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="27145" i_stop="26172" i_length="974">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.749" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26171" g_stop="26100" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="448" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="26099" i_stop="26025" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.227" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="26024" g_stop="26001" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="472" r_length="24" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="-" ref_id="SGN-E471603" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E471603" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27909" e_stop="27839"/>
          <exon e_start="27740" e_stop="27643"/>
          <exon e_start="27571" e_stop="27452"/>
          <exon e_start="27335" e_stop="27308"/>
          <exon e_start="27204" e_stop="27146"/>
          <exon e_start="26171" e_stop="26100"/>
          <exon e_start="26024" e_stop="26001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTCTGCTCACCAAAAAGAGAAGGAAGCATGGGAAATAAGCCTTCAAAATGTAGAAGAAACATGGCGATGTAATTTCTTAGGATGATATAATAATCAGCTTTCTATTCTTGAATTGCCATTTATTCAGCTTCCAAATGGAAAACTAATTCTAGATACTGCTTTGCAGTGAAATGTGATGCATTTAAAGCAGAGAGTGTGGTTACCTCTGGTGATAATGTTCAAAAAGAACTAGATGACCTCAAACAAAGCTGTAAAAAACTGAAGGTGTGATTTATAATTATCAATATCATCATAACACTTTTTAGTTTGGTGACACTGAGTTCTTTAACTTGTAGGAAGAGCTTGATTCTTTTCGTGACCTTGCTGATAAGATGATTGAGGAGAAGGACAATGAAATCTCTAGACTTCTAGACGATAACGAGAACCTTCGCCACAAACTTCAGTCTGAATTTTTAGTAAGTGTGGAGCAGTCTCCAATCACCTATTCATGAATCTGCTTGAGCAATCACCTAGTTAACATGTGTATTTAAGCATTCTTTTAAAATTGTGATTTTTCTTCTGCAAATATCAGGCCGATCGCAATGGCAATTCCAATACAGGTATGAAGATCTTCAGCACCTTTTAGCTTATTCTACAGTTCAAAATGATATTCTTTGATAGCTGCTTCAGTGACTAATATTGCTCTTTGAAATGATTGTACAGTATATGACAAGCAAGATCCTCTGAATTCGACTACCTCAGCTGCTGATCAGCAGATTCTGGTATGGACAATTTTCTAGTTACATTACTGTGCAATATTTTCATCAGTTACTGCAAAGGGGAAAAAGAAAATCAAAGAATGAGACAGAGATTAGTACAAGGGGCAACAGTTTTAAAGTCCAACCCAAACATGGTCTGGCATGCTTTATGCTTTAGACATGTCCTTTTTCGCCTTAATATACACCATCGGGACACCTTTAGCCTCCAAACGCCTCAAGAGAACATCCCTTGGGACTTTGTCATAGGCCTTTTCAAGGTCAATGAACGCCATATGAAAGTCCCTCTTCCTTTCAATATACTTCTCCACCAATCTCCGCACAAGGTGGATGGCTTCAGTAGTCGAAATCCCCGGCATGAACCCAAATTGATCCTCAATAATGGACACTCCTTTACTGTTACCTTCTCAAAAAAAAAAAAAAAATTGACACTCCTTTCCTCACCCTCATCTCCTCTACTCTCTCCGAGACCTTCGTAGTGTGGCTTAACAATTCGATACCCCTCTAATTGTTATAGTTTGGATATCACCGTCGTTCTTGTACAATGGAACCATTATACTTCATCTCCACTCGTCGGGCATTTTTTTCCGTCTTGAAAATAGTATTAAACTACCCAGTCAAAACCACTCGACACCTGCTTATCTGTTATATATATGAAAGAAAAAAAAGTAGTATTTGAAGTAAAGTCGAAAAAGAATATTTGGAAATTGAAGTCGTCTCTGGACATGCATTTAACCTGGGAAAAAGTTGAAATTTTGTGAATGGATGTGGGTTTTCACTTTAATTTAAAAAACCCATCTTCAATTTTTTCCAGAAAATCAGTCCAATGTATAACTAAACAGTGATTTGAAAGAAATATAATGAAAAAAAGGAAAAATAATCCGTGGACAAACCGCTCCTTAGTTAAGAACATTAGTTTTTAGCATTCAGAGACTTCATTTCTGTCTCACGCCACTACTTAAAACTTCTTGACGCTTCAGGTCTTGGCGAGACAACAAGCACAAAGAGAAGAAGAGCTTGCTCAGTCACAACGTCACATTCTAGCCCTTCAAGTAAGTTATTTGCTCCGAGAACATCAATATTCTTTAGAGATAGTTCCCTCATTAGAGTCTGATGTCTTGATTCAGGAGGAGATAGAAGAGCTTGAACGT</genome_strand>
        <mrna_strand>TTTTTCTGCCCACCAAAAAGAGAAGGAAGCATGGGAAATAAGCCTTCAAAATGTAGAAGAAACATGGCGAT..................................................................................................TGAAATGTGATGCATTTAAAGCAGAGAGTGTGGTTACCTCTGGTGATAATGTTCAAAAAGAACTAGATGACCTCAAACAAAGCTGCAAAAAATTGAAG.......................................................................GAAGAGCTTGATTCTTTTCGTGACCTTGCTGATAAGATGATTGAGGAGAAGGACAATGAGATCTCTAGACTTCTAGATGATAATGAGAACCTTCGCCACAAACTTCAGTCTGAATTTTTT....................................................................................................................GCTGATCACAATGGCAATTCCAATACAG.......................................................................................................TATATGACAAGCAGGATCCTCTGAATTCGACTACCTCAGATGCTGATCAGCAGATTCTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGCGAGACAACAAGCACAAAGAGAAGAAGAGCTTGCTCAGTCACAACGTCACATTCTAGCCCTTCAA...........................................................................GAGGAGATAGAAGAGCTCGAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E367005" ref_strand="+" ref_description="SGN-E367005 [cLPT-6-J7]">
      <seq>gggatagagcccttcaagatctaaagagcaccttaattaatcatgagaaggaactttcggacagagatgaagctcttcgtgctacagagcaacggatcagaagcatggaaatgaagttcaattctgctatttctgcgcaccaaaaagagaaggaagcatgggaaataagccttcaaaatgtagaagaaacatggcgattgaaatgtgatgcatttaaagcagagagtgtggttacctctggtgataatgttcaaaaagaactagatgacctcaaacaaagctgtaaaaaactgaaggaagagcttgattcttttcgtgaccttgctgataagatgattgaggagaaggacaatgaaatctctagacttctagacgataacgagaaccttcgccacaaacttcagtctgaatttttagccgatcgcaatggcaattccaatacagtatatgacaagcaggatcctctgaattcgactacctcagctgctgatcagcagattctggtcttggcgagacaacaagcacaaagagaagaagagcttgctcagtcacaacgtcacattctagccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="-" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="28586" stop="25805"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28286" g_stop="28223" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28222" i_stop="27973" i_length="250">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.903" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27972" g_stop="27839" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="198" r_length="134" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27838" i_stop="27741" i_length="98">
            <donor d_prob="0.678" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27740" g_stop="27643" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="296" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27642" i_stop="27572" i_length="71">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27571" g_stop="27452" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="416" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27451" i_stop="27336" i_length="116">
            <donor d_prob="0.222" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27335" g_stop="27308" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="444" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="27307" i_stop="27205" i_length="103">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.924" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="27204" g_stop="27146" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="503" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="27145" i_stop="26172" i_length="974">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.749" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="26171" g_stop="26105" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="570" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="-" ref_id="SGN-E367005" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367005" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28286" e_stop="28223"/>
          <exon e_start="27972" e_stop="27839"/>
          <exon e_start="27740" e_stop="27643"/>
          <exon e_start="27571" e_stop="27452"/>
          <exon e_start="27335" e_stop="27308"/>
          <exon e_start="27204" e_stop="27146"/>
          <exon e_start="26171" e_stop="26105"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGATAGAGCCCTTCAAGATCTAAAGAGCACCTTAATTAATCATGAGAAGGAACTTTCGGACAGGTAATCTGAGTTTGATGACTTGTTAGATGTTCACCTGAACACAAATTATACGCAGTTCATTTTTGGGGTGTTTTTTCACAGATTAAACTCACAAACATTGACATGGACACACTCTTCAGTTCATTTACACCCTCGGGCAAAATAGTTTTAAATCTAACTTGTAGTAGTACAGAGTTTTTACAGATTTGATGTAGCTTTCATTTGCTGAAAGAGAATGAATTGACACACTTCTCCATTAAATCATTTCCAGAGATGAAGCTCTTCGTGCTACAGAGCAACGGATCAGAAGCATGGAAATGAAGTTCAATTCTGCTATTTCTGCTCACCAAAAAGAGAAGGAAGCATGGGAAATAAGCCTTCAAAATGTAGAAGAAACATGGCGATGTAATTTCTTAGGATGATATAATAATCAGCTTTCTATTCTTGAATTGCCATTTATTCAGCTTCCAAATGGAAAACTAATTCTAGATACTGCTTTGCAGTGAAATGTGATGCATTTAAAGCAGAGAGTGTGGTTACCTCTGGTGATAATGTTCAAAAAGAACTAGATGACCTCAAACAAAGCTGTAAAAAACTGAAGGTGTGATTTATAATTATCAATATCATCATAACACTTTTTAGTTTGGTGACACTGAGTTCTTTAACTTGTAGGAAGAGCTTGATTCTTTTCGTGACCTTGCTGATAAGATGATTGAGGAGAAGGACAATGAAATCTCTAGACTTCTAGACGATAACGAGAACCTTCGCCACAAACTTCAGTCTGAATTTTTAGTAAGTGTGGAGCAGTCTCCAATCACCTATTCATGAATCTGCTTGAGCAATCACCTAGTTAACATGTGTATTTAAGCATTCTTTTAAAATTGTGATTTTTCTTCTGCAAATATCAGGCCGATCGCAATGGCAATTCCAATACAGGTATGAAGATCTTCAGCACCTTTTAGCTTATTCTACAGTTCAAAATGATATTCTTTGATAGCTGCTTCAGTGACTAATATTGCTCTTTGAAATGATTGTACAGTATATGACAAGCAAGATCCTCTGAATTCGACTACCTCAGCTGCTGATCAGCAGATTCTGGTATGGACAATTTTCTAGTTACATTACTGTGCAATATTTTCATCAGTTACTGCAAAGGGGAAAAAGAAAATCAAAGAATGAGACAGAGATTAGTACAAGGGGCAACAGTTTTAAAGTCCAACCCAAACATGGTCTGGCATGCTTTATGCTTTAGACATGTCCTTTTTCGCCTTAATATACACCATCGGGACACCTTTAGCCTCCAAACGCCTCAAGAGAACATCCCTTGGGACTTTGTCATAGGCCTTTTCAAGGTCAATGAACGCCATATGAAAGTCCCTCTTCCTTTCAATATACTTCTCCACCAATCTCCGCACAAGGTGGATGGCTTCAGTAGTCGAAATCCCCGGCATGAACCCAAATTGATCCTCAATAATGGACACTCCTTTACTGTTACCTTCTCAAAAAAAAAAAAAAAATTGACACTCCTTTCCTCACCCTCATCTCCTCTACTCTCTCCGAGACCTTCGTAGTGTGGCTTAACAATTCGATACCCCTCTAATTGTTATAGTTTGGATATCACCGTCGTTCTTGTACAATGGAACCATTATACTTCATCTCCACTCGTCGGGCATTTTTTTCCGTCTTGAAAATAGTATTAAACTACCCAGTCAAAACCACTCGACACCTGCTTATCTGTTATATATATGAAAGAAAAAAAAGTAGTATTTGAAGTAAAGTCGAAAAAGAATATTTGGAAATTGAAGTCGTCTCTGGACATGCATTTAACCTGGGAAAAAGTTGAAATTTTGTGAATGGATGTGGGTTTTCACTTTAATTTAAAAAACCCATCTTCAATTTTTTCCAGAAAATCAGTCCAATGTATAACTAAACAGTGATTTGAAAGAAATATAATGAAAAAAAGGAAAAATAATCCGTGGACAAACCGCTCCTTAGTTAAGAACATTAGTTTTTAGCATTCAGAGACTTCATTTCTGTCTCACGCCACTACTTAAAACTTCTTGACGCTTCAGGTCTTGGCGAGACAACAAGCACAAAGAGAAGAAGAGCTTGCTCAGTCACAACGTCACATTCTAGCCC</genome_strand>
        <mrna_strand>GGGATAGAGCCCTTCAAGATCTAAAGAGCACCTTAATTAATCATGAGAAGGAACTTTCGGACAG..........................................................................................................................................................................................................................................................AGATGAAGCTCTTCGTGCTACAGAGCAACGGATCAGAAGCATGGAAATGAAGTTCAATTCTGCTATTTCTGCGCACCAAAAAGAGAAGGAAGCATGGGAAATAAGCCTTCAAAATGTAGAAGAAACATGGCGAT..................................................................................................TGAAATGTGATGCATTTAAAGCAGAGAGTGTGGTTACCTCTGGTGATAATGTTCAAAAAGAACTAGATGACCTCAAACAAAGCTGTAAAAAACTGAAG.......................................................................GAAGAGCTTGATTCTTTTCGTGACCTTGCTGATAAGATGATTGAGGAGAAGGACAATGAAATCTCTAGACTTCTAGACGATAACGAGAACCTTCGCCACAAACTTCAGTCTGAATTTTTA....................................................................................................................GCCGATCGCAATGGCAATTCCAATACAG.......................................................................................................TATATGACAAGCAGGATCCTCTGAATTCGACTACCTCAGCTGCTGATCAGCAGATTCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTGGCGAGACAACAAGCACAAAGAGAAGAAGAGCTTGCTCAGTCACAACGTCACATTCTAGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E482391" ref_strand="+" ref_description="SGN-E482391 [cSTD-22-E5]">
      <seq>aggaagagcttgattcttttcgtgaccttgctgataagatgattgaggagaaggacaatgaggtctctagacttctagatgataatgagaaccttcgccacaaacttcagtctgaattttttgctgatcacaatggcaattccaatacagtatatgacaagcaggatcctctgaattcgactacctcagatgctgatcagcagattctagtatggacaattttctagttacattactgtgcaatattttcatcagttgctgcaaaggggaaaaaggaaaccaaagagtgagacagagattagtataagtggcaacagtttaaagtccaacccaaacatggtctgacatgctttatgctttatacatgtcctttatcgccctaatatacaccatcgggacacctttagcctccaaacgcctccagagaacatccctcgggactttgccatatgaaggtccctcttcctttccctatacttctccacctatctccgcacaaggtggatggcttcagtagtcgaaatccccggcatgaacccaaattgattctcagaaatggacactcctttcctcaccctcatctcctctactctcccaaccttcatagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="-" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="27873" stop="26372"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27573" g_stop="27452" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27451" i_stop="27336" i_length="116">
            <donor d_prob="0.222" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27335" g_stop="27308" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="150" r_length="28" r_score="0.929"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27307" i_stop="27205" i_length="103">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.924" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27204" g_stop="26754" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="572" r_length="422" r_score="0.887"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="-" ref_id="SGN-E482391" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E482391" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27573" e_stop="27452"/>
          <exon e_start="27335" e_stop="27308"/>
          <exon e_start="27204" e_stop="26754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAGAGCTTGATTCTTTTCGTGACCTTGCTGATAAGATGATTGAGGAGAAGGACAATGAAATCTCTAGACTTCTAGACGATAACGAGAACCTTCGCCACAAACTTCAGTCTGAATTTTTAGTAAGTGTGGAGCAGTCTCCAATCACCTATTCATGAATCTGCTTGAGCAATCACCTAGTTAACATGTGTATTTAAGCATTCTTTTAAAATTGTGATTTTTCTTCTGCAAATATCAGGCCGATCGCAATGGCAATTCCAATACAGGTATGAAGATCTTCAGCACCTTTTAGCTTATTCTACAGTTCAAAATGATATTCTTTGATAGCTGCTTCAGTGACTAATATTGCTCTTTGAAATGATTGTACAGTATATGACAAGCAAGATCCTCTGAATTCGACTACCTCAGCTGCTGATCAGCAGATTCTGGTATGGACAATTTTCTAGTTACATTACTGTGCAATATTTTCATCAGTTACTGCAAAGGGGAAAAAGAAAATCAAAGAATGAGACAGAGATTAGTACAAGGGGCAACAGTTTTAAAGTCCAACCCAAACATGGTCTGGCATGCTTTATGCTTTAGACATGTCCTTTTTCGCCTTAATATACACCATCGGGACACCTTTAGCCTCCAAACGCCTCAAGAGAACATCCCTTGGGACTTTGTCATAGGCCTTTTCAAGGTCAATGAACGCCATATGAAAGTCCCTCTTCCTTTCAATATACTTCTCCACCAATCTCCGCACAAGGTGGATGGCTTCAGTAGTCGAAATCCCCGGCATGAACCCAAATTGATCCTCAATAATGGACACTCCTTTACT</genome_strand>
        <mrna_strand>AGGAAGAGCTTGATTCTTTTCGTGACCTTGCTGATAAGATGATTGAGGAGAAGGACAATGAGGTCTCTAGACTTCTAGATGATAATGAGAACCTTCGCCACAAACTTCAGTCTGAATTTTTT....................................................................................................................GCTGATCACAATGGCAATTCCAATACAG.......................................................................................................TATATGACAAGCAGGATCCTCTGAATTCGACTACCTCAGATGCTGATCAGCAGATTCTAGTATGGACAATTTTCTAGTTACATTACTGTGCAATATTTTCATCAGTTGCTGCAAAGGGGAAAAAGGAAACCAAAGAGTGAGACAGAGATTAGTATAAGTGGCAACAG-TTTAAAGTCCAACCCAAACATGGTCTGACATGCTTTATGCTTTATACATGTCCTTTATCGCCCTAATATACACCATCGGGACACCTTTAGCCTCCAAACGCCTCCAGAGAACATCCCTCGGGAC--T-T--T--G-C----C-A--T--AT----G--A-A-G---GTCCCTCTTCCTTTCCCTATACTTCTCCACCTATCTCCGCACAAGGTGGATGGCTTCAGTAGTCGAAATCCCCGGCATGAACCCAAATTGATTCTCAGAAATGGACACTCCTTTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E429215" ref_strand="+" ref_description="SGN-E429215 [STM-51-N21]">
      <seq>aggaagagcttgattcttttcgtgaccttgctgataagatgattgaggagaaggacaatgaggtctctagacttctagatgataatgagaaccttcgccacaaacttcagtctgaattttttgctgatcacaatggcaattccaatacagtatatgacaagcaggatcctctgaattcgactacctcagatgctgatcagcagattctagtatggacaattttctagttacattactgtgcaatattttcatcagttgctgcaaaggggaaaaaggaaaccaaagagtgagacagagattagtataagtggcaacagtttaaagtccaacccaaacatggtctgacatgctttatgctttatacatgtcctttatcgccctaatatacaccatcgggacacctttagcctccaaacgcctccagagaacatccctcgggactttgccatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="-" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="27873" stop="26604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27573" g_stop="27452" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27451" i_stop="27336" i_length="116">
            <donor d_prob="0.222" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27335" g_stop="27308" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="150" r_length="28" r_score="0.929"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27307" i_stop="27205" i_length="103">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.924" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27204" g_stop="26903" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="451" r_length="301" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="-" ref_id="SGN-E429215" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E429215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27573" e_stop="27452"/>
          <exon e_start="27335" e_stop="27308"/>
          <exon e_start="27204" e_stop="26903"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAGAGCTTGATTCTTTTCGTGACCTTGCTGATAAGATGATTGAGGAGAAGGACAATGAAATCTCTAGACTTCTAGACGATAACGAGAACCTTCGCCACAAACTTCAGTCTGAATTTTTAGTAAGTGTGGAGCAGTCTCCAATCACCTATTCATGAATCTGCTTGAGCAATCACCTAGTTAACATGTGTATTTAAGCATTCTTTTAAAATTGTGATTTTTCTTCTGCAAATATCAGGCCGATCGCAATGGCAATTCCAATACAGGTATGAAGATCTTCAGCACCTTTTAGCTTATTCTACAGTTCAAAATGATATTCTTTGATAGCTGCTTCAGTGACTAATATTGCTCTTTGAAATGATTGTACAGTATATGACAAGCAAGATCCTCTGAATTCGACTACCTCAGCTGCTGATCAGCAGATTCTGGTATGGACAATTTTCTAGTTACATTACTGTGCAATATTTTCATCAGTTACTGCAAAGGGGAAAAAGAAAATCAAAGAATGAGACAGAGATTAGTACAAGGGGCAACAGTTTTAAAGTCCAACCCAAACATGGTCTGGCATGCTTTATGCTTTAGACATGTCCTTTTTCGCCTTAATATACACCATCGGGACACCTTTAGCCTCCAAACGCCTCAAGAGAACATCCCTTGGGACTTTGTCATAG</genome_strand>
        <mrna_strand>AGGAAGAGCTTGATTCTTTTCGTGACCTTGCTGATAAGATGATTGAGGAGAAGGACAATGAGGTCTCTAGACTTCTAGATGATAATGAGAACCTTCGCCACAAACTTCAGTCTGAATTTTTT....................................................................................................................GCTGATCACAATGGCAATTCCAATACAG.......................................................................................................TATATGACAAGCAGGATCCTCTGAATTCGACTACCTCAGATGCTGATCAGCAGATTCTAGTATGGACAATTTTCTAGTTACATTACTGTGCAATATTTTCATCAGTTGCTGCAAAGGGGAAAAAGGAAACCAAAGAGTGAGACAGAGATTAGTATAAGTGGCAACAG-TTTAAAGTCCAACCCAAACATGGTCTGACATGCTTTATGCTTTATACATGTCCTTTATCGCCCTAATATACACCATCGGGACACCTTTAGCCTCCAAACGCCTCCAGAGAACATCCCTCGGGACTTTGCCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E586048" ref_strand="+" ref_description="SGN-E586048 [73472]">
      <seq>gctgagagtaactgcatccgtgctgagatcgaagcagccaaatttagaagtcaactggagtcacagttatctgctcagtctcaggtgttaaactcaaaagaggctgaattgatggcggccaaagaagagatcaatcgcactcaaagtgaattttcatcttacaaggctcgtgctcacgcacttcttcagcgatgggatgctgaattggctgctgctagagacagcgaacaacttaaagcactggaggaagcattgaaggaagtggagaaagaggtaatgtcagtctcttctgaaagggataaagcccttcaagatctaaagaacactttagttaatcatgagaaggaactttcagacagagatgaagctcttcgtgctacagagcaacggatcagaagcatggaaatgaagctcaattctgctttttctgcccaccaaaaagagaaggaagcatgggaaataagccttcaaaatgtagaagaaacatggcgattgaacatgtgatgcatttaaagcagagagtgtggttacctctggtgataatgttcaaaaagaactagatgacctcaaacaaagctgcaaaaaactgaaggaagagcttgattcttttcgtgaccttgctgataagatgattgaggagaaggacaatggaaatctctaggacttctagatgataacgagaaccttcgccacaaaacttcaagtctgaattttttgccgatcacaatggcaattccaataccagtatatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="-" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="30232" stop="26999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29932" g_stop="29884" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29883" i_stop="29809" i_length="75">
            <donor d_prob="0.418" d_score="0.94"/>
            <acceptor a_prob="0.889" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29808" g_stop="29729" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="129" r_length="80" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29728" i_stop="28554" i_length="1175">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28553" g_stop="28425" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="258" r_length="129" r_score="0.961"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28424" i_stop="28324" i_length="101">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.867" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28323" g_stop="28223" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="359" r_length="101" r_score="0.950"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28222" i_stop="27973" i_length="250">
            <donor d_prob="0.895" d_score="0.92"/>
            <acceptor a_prob="0.903" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27972" g_stop="27839" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="493" r_length="134" r_score="0.978"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="27838" i_stop="27741" i_length="98">
            <donor d_prob="0.678" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="27740" g_stop="27643" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="592" r_length="99" r_score="0.969"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="27642" i_stop="27572" i_length="71">
            <donor d_prob="0.911" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="27571" g_stop="27452" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="716" r_length="124" r_score="0.917"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="27451" i_stop="27336" i_length="116">
            <donor d_prob="0.222" d_score="0.88"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="27335" g_stop="27308" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="717" r_stop="745" r_length="29" r_score="0.893"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="27307" i_stop="27205" i_length="103">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.924" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="27204" g_stop="27197" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="746" r_stop="753" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="-" ref_id="SGN-E586048" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E586048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29932" e_stop="29884"/>
          <exon e_start="29808" e_stop="29729"/>
          <exon e_start="28553" e_stop="28425"/>
          <exon e_start="28323" e_stop="28223"/>
          <exon e_start="27972" e_stop="27839"/>
          <exon e_start="27740" e_stop="27643"/>
          <exon e_start="27571" e_stop="27452"/>
          <exon e_start="27335" e_stop="27308"/>
          <exon e_start="27204" e_stop="27197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGAGAGTAACTGCATCCGTGCCGAGATTGAAGCGGCCAAATTTAGAAGTATAATTCTGTATACTGGTTAGTTACCTTGTTTAGGCGATGAATTTGGAGCTCATACTTGTATTGACATTGTAGGTCAACTGGAGTCACAGTTATCTGCTCAGTCCCAGGTATTAAACTCAAAAGAGGCTGAATTGATGGCGGCCAAAGAAGAGGTGATCTCTTATTTAACTTATCTGTATTTCTCCTCTCACAAATGTTTAGGCCCCATTTGTTTTTATAAGATTATGACGTCGTAATGTGTATACACGTTTAGATATTTAATATTGTATCTAGATCTTAACGCTGAAAAACTAACATTGTTTTTTCAGCATCTGAATGTGGATAATTTATCTTTATTTTAAAGCTAATTAATAGATAGAATTTCAAGTAAATTACTACGAATAAATTTGTATCCACAAAATGTTGGAAAATGTTTATTTACGGGGAGTTAAATAAATTTTTTATTTGATGAATCATACTCTAAAAAAAACTAGAAAGAAAGGTAGGTGGTGATCGGCAATAATAGTTGTAAGGTGGTGGTGGTCATGATTGTATTGGGGAGATTGCCTATGATGGTTGTGCAATGGTGTCCGGTTTTGGTCAGATAGAAGTTAGTGGTAGAGGTGGTTGGTACTGGTGGTTTGCGAAGGAGGCGGTTAGTGGTGGTGACTAGTTGTGAAGGTGCTTGGTGATTGTGGTGGTGACCGGCTATGGTGGTTGCGCAATGGAGGCTGGTGGTGGAGGTAATTGGTTAGTGGCAGTAGTTGACTGTTGTGGAGATGGTTAGTCGTTGGTATCAATGCATATAGAACTTGTATTGATGTCTAGATATCGAGATCCTCCTGAGGTGACAGATTAATTGGATATTGGCATTCTCCCAACTTCTTGGCAAAAAGATTATATATCAATTGGATCTATGCACTTCTCTTATTTTCTTCTTGAAATATGTGCACCAATTGCATATTTGACATTTTACTAAAGGAATCATTTGAAGCAAGAAAAGAAACAAAGAATCTGCAAGTGACACATATAATTTTTTTCGCCTTGACTGTATGGTATATACTGATTTAAAGTTATTGAGACTTCAGGTAAAGATTTTTCTTCCAGTTGCTAGACTGTGCAATGATAGAATCTGGCAAGTTTAGGATGTTGAATGGCTCTTTTTAAGATTAATCTAGGATGCTGAATAGTGTGCCATTGACTTCAATTATTCCTTAAGAGTTTGGTACTAGGGAGTTTGTTGCATGAAAAGTGGCTAATATAATTATGGGAAAGAAGTAGCAAAGGTTGACACAAATATTCTTTGTTTTATGTATCTCATGATTTTCTCTTCAATGGTCACTTGCAGATCAATCGCACTCAAAGTGAGTTTTCATCTTACAAGGCTCGTGCTCACGCACTTCTCCAGCGAAAGGATGCTGAATTGGCTGCTGCTAGGGACAGCGAACAACTTAAAGCACTGGAGGAAGCATTGAAGGTATATGCTTTTGGGTGTAACTAGTGAAATGCTTTGGCTTAATAGTTTAACATTAAGGTCATTTAATTGTTGCTAAGACATCAAAAAATTTGCTCTTTCAGGAAGTGGAGAAAGAGGTAATGTCAGTCTCTTCTGAAAGGGATAGAGCCCTTCAAGATCTAAAGAGCACCTTAATTAATCATGAGAAGGAACTTTCGGACAGGTAATCTGAGTTTGATGACTTGTTAGATGTTCACCTGAACACAAATTATACGCAGTTCATTTTTGGGGTGTTTTTTCACAGATTAAACTCACAAACATTGACATGGACACACTCTTCAGTTCATTTACACCCTCGGGCAAAATAGTTTTAAATCTAACTTGTAGTAGTACAGAGTTTTTACAGATTTGATGTAGCTTTCATTTGCTGAAAGAGAATGAATTGACACACTTCTCCATTAAATCATTTCCAGAGATGAAGCTCTTCGTGCTACAGAGCAACGGATCAGAAGCATGGAAATGAAGTTCAATTCTGCTATTTCTGCTCACCAAAAAGAGAAGGAAGCATGGGAAATAAGCCTTCAAAATGTAGAAGAAACATGGCGATGTAATTTCTTAGGATGATATAATAATCAGCTTTCTATTCTTGAATTGCCATTTATTCAGCTTCCAAATGGAAAACTAATTCTAGATACTGCTTTGCAGTGAA-ATGTGATGCATTTAAAGCAGAGAGTGTGGTTACCTCTGGTGATAATGTTCAAAAAGAACTAGATGACCTCAAACAAAGCTGTAAAAAACTGAAGGTGTGATTTATAATTATCAATATCATCATAACACTTTTTAGTTTGGTGACACTGAGTTCTTTAACTTGTAGGAAGAGCTTGATTCTTTTCGTGACCTTGCTGATAAGATGATTGAGGAGAAGGACAAT-GAAATCTCTA-GACTTCTAGACGATAACGAGAACCTTCGCCAC-AAACTTC-AGTCTGAATTTTTAGTAAGTGTGGAGCAGTCTCCAATCACCTATTCATGAATCTGCTTGAGCAATCACCTAGTTAACATGTGTATTTAAGCATTCTTTTAAAATTGTGATTTTTCTTCTGCAAATATCAGGCCGATCGCAATGGCAATTCCAATA-CAGGTATGAAGATCTTCAGCACCTTTTAGCTTATTCTACAGTTCAAAATGATATTCTTTGATAGCTGCTTCAGTGACTAATATTGCTCTTTGAAATGATTGTACAGTATATGAC</genome_strand>
        <mrna_strand>GCTGAGAGTAACTGCATCCGTGCTGAGATCGAAGCAGCCAAATTTAGAA...........................................................................GTCAACTGGAGTCACAGTTATCTGCTCAGTCTCAGGTGTTAAACTCAAAAGAGGCTGAATTGATGGCGGCCAAAGAAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAATCGCACTCAAAGTGAATTTTCATCTTACAAGGCTCGTGCTCACGCACTTCTTCAGCGATGGGATGCTGAATTGGCTGCTGCTAGAGACAGCGAACAACTTAAAGCACTGGAGGAAGCATTGAAG.....................................................................................................GAAGTGGAGAAAGAGGTAATGTCAGTCTCTTCTGAAAGGGATAAAGCCCTTCAAGATCTAAAGAACACTTTAGTTAATCATGAGAAGGAACTTTCAGACAG..........................................................................................................................................................................................................................................................AGATGAAGCTCTTCGTGCTACAGAGCAACGGATCAGAAGCATGGAAATGAAGCTCAATTCTGCTTTTTCTGCCCACCAAAAAGAGAAGGAAGCATGGGAAATAAGCCTTCAAAATGTAGAAGAAACATGGCGAT..................................................................................................TGAACATGTGATGCATTTAAAGCAGAGAGTGTGGTTACCTCTGGTGATAATGTTCAAAAAGAACTAGATGACCTCAAACAAAGCTGCAAAAAACTGAAG.......................................................................GAAGAGCTTGATTCTTTTCGTGACCTTGCTGATAAGATGATTGAGGAGAAGGACAATGGAAATCTCTAGGACTTCTAGATGATAACGAGAACCTTCGCCACAAAACTTCAAGTCTGAATTTTTT....................................................................................................................GCCGATCACAATGGCAATTCCAATACCAG.......................................................................................................TATATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E240795" ref_strand="+" ref_description="SGN-E240795 [cLED-24-O24]">
      <seq>tgagaaggaactttcggacagagatgaagctcttcgtgctacagagcaacggatcagaagcatggaaatgaagttcaattctgctatttctgctcaccaaaaagagaaggaagcatgggaaataagccttcaaaatgtagaagaaacatggcgattgaaatgtgatgcatttaaagcagagagtgtggttacctctggtgataatgttcaaaaagaactagatgacctcaaacaaagctgtaaaaaactgaaggaagagcttgattcttttcgtgaccttgctgataagatgattgaggagaaggacaatgaaatctctagacttctagacgataacgagaaccttcgccacaaacttcagtctgaatttttagccgatcgcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="-" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="28543" stop="27151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28243" g_stop="28223" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28222" i_stop="27973" i_length="250">
            <donor d_prob="0.895" d_score="0.00"/>
            <acceptor a_prob="0.903" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27972" g_stop="27839" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="155" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27838" i_stop="27741" i_length="98">
            <donor d_prob="0.678" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27740" g_stop="27643" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="253" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27642" i_stop="27572" i_length="71">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27571" g_stop="27452" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="373" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27451" i_stop="27336" i_length="116">
            <donor d_prob="0.222" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27335" g_stop="27324" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="385" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="-" ref_id="SGN-E240795" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240795" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28243" e_stop="28223"/>
          <exon e_start="27972" e_stop="27839"/>
          <exon e_start="27740" e_stop="27643"/>
          <exon e_start="27571" e_stop="27452"/>
          <exon e_start="27335" e_stop="27324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAAGGAACTTTCGGACAGGTAATCTGAGTTTGATGACTTGTTAGATGTTCACCTGAACACAAATTATACGCAGTTCATTTTTGGGGTGTTTTTTCACAGATTAAACTCACAAACATTGACATGGACACACTCTTCAGTTCATTTACACCCTCGGGCAAAATAGTTTTAAATCTAACTTGTAGTAGTACAGAGTTTTTACAGATTTGATGTAGCTTTCATTTGCTGAAAGAGAATGAATTGACACACTTCTCCATTAAATCATTTCCAGAGATGAAGCTCTTCGTGCTACAGAGCAACGGATCAGAAGCATGGAAATGAAGTTCAATTCTGCTATTTCTGCTCACCAAAAAGAGAAGGAAGCATGGGAAATAAGCCTTCAAAATGTAGAAGAAACATGGCGATGTAATTTCTTAGGATGATATAATAATCAGCTTTCTATTCTTGAATTGCCATTTATTCAGCTTCCAAATGGAAAACTAATTCTAGATACTGCTTTGCAGTGAAATGTGATGCATTTAAAGCAGAGAGTGTGGTTACCTCTGGTGATAATGTTCAAAAAGAACTAGATGACCTCAAACAAAGCTGTAAAAAACTGAAGGTGTGATTTATAATTATCAATATCATCATAACACTTTTTAGTTTGGTGACACTGAGTTCTTTAACTTGTAGGAAGAGCTTGATTCTTTTCGTGACCTTGCTGATAAGATGATTGAGGAGAAGGACAATGAAATCTCTAGACTTCTAGACGATAACGAGAACCTTCGCCACAAACTTCAGTCTGAATTTTTAGTAAGTGTGGAGCAGTCTCCAATCACCTATTCATGAATCTGCTTGAGCAATCACCTAGTTAACATGTGTATTTAAGCATTCTTTTAAAATTGTGATTTTTCTTCTGCAAATATCAGGCCGATCGCAAT</genome_strand>
        <mrna_strand>TGAGAAGGAACTTTCGGACAG..........................................................................................................................................................................................................................................................AGATGAAGCTCTTCGTGCTACAGAGCAACGGATCAGAAGCATGGAAATGAAGTTCAATTCTGCTATTTCTGCTCACCAAAAAGAGAAGGAAGCATGGGAAATAAGCCTTCAAAATGTAGAAGAAACATGGCGAT..................................................................................................TGAAATGTGATGCATTTAAAGCAGAGAGTGTGGTTACCTCTGGTGATAATGTTCAAAAAGAACTAGATGACCTCAAACAAAGCTGTAAAAAACTGAAG.......................................................................GAAGAGCTTGATTCTTTTCGTGACCTTGCTGATAAGATGATTGAGGAGAAGGACAATGAAATCTCTAGACTTCTAGACGATAACGAGAACCTTCGCCACAAACTTCAGTCTGAATTTTTA....................................................................................................................GCCGATCGCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E400180" ref_strand="+" ref_description="SGN-E400180 [cSTC-5-B21]">
      <seq>gaagtcaactggagtcacagttatctgctcagtctcaggtgtaaactcaaaagaggctgaattgatggtggccaaagaagagatcaatcgcactcaaagtgaattttcatcttacaaggctcgtgctcacgcacttcttagcgaaaggatgctgaattggctgtgtagagacagcgaacaacttaaagcactggaggaagcattaaaggaagtggagaaagaggtaatgtcagtctcttctgaaagggaaaagcccttcaagatctaaagaacactttnttaatcatgagaaggaactttcagacagaaagaagcttttttgctacagagcaacggatcagaagcatggaaatgaagctcaattctgctgtttctgcccaccaaaaagagaaggaagcatgggaaataagccttcaaaatgtagaagaaacatggcgattgaaatgtgatgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="-" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="30110" stop="27524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29886" g_stop="29884" g_length="3"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="3" r_length="3" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29883" i_stop="29809" i_length="75">
            <donor d_prob="0.418" d_score="0.00"/>
            <acceptor a_prob="0.889" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29808" g_stop="29729" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="82" r_length="79" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29728" i_stop="28554" i_length="1175">
            <donor d_prob="0.994" d_score="0.92"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28553" g_stop="28425" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="208" r_length="126" r_score="0.946"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28424" i_stop="28324" i_length="101">
            <donor d_prob="0.995" d_score="0.92"/>
            <acceptor a_prob="0.867" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28323" g_stop="28223" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="307" r_length="99" r_score="0.931"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28222" i_stop="27973" i_length="250">
            <donor d_prob="0.895" d_score="0.90"/>
            <acceptor a_prob="0.903" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27972" g_stop="27839" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="439" r_length="132" r_score="0.940"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="27838" i_stop="27741" i_length="98">
            <donor d_prob="0.678" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="27740" g_stop="27726" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="454" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="-" ref_id="SGN-E400180" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.018" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E400180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29886" e_stop="29884"/>
          <exon e_start="29808" e_stop="29729"/>
          <exon e_start="28553" e_stop="28425"/>
          <exon e_start="28323" e_stop="28223"/>
          <exon e_start="27972" e_stop="27839"/>
          <exon e_start="27740" e_stop="27726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTATAATTCTGTATACTGGTTAGTTACCTTGTTTAGGCGATGAATTTGGAGCTCATACTTGTATTGACATTGTAGGTCAACTGGAGTCACAGTTATCTGCTCAGTCCCAGGTATTAAACTCAAAAGAGGCTGAATTGATGGCGGCCAAAGAAGAGGTGATCTCTTATTTAACTTATCTGTATTTCTCCTCTCACAAATGTTTAGGCCCCATTTGTTTTTATAAGATTATGACGTCGTAATGTGTATACACGTTTAGATATTTAATATTGTATCTAGATCTTAACGCTGAAAAACTAACATTGTTTTTTCAGCATCTGAATGTGGATAATTTATCTTTATTTTAAAGCTAATTAATAGATAGAATTTCAAGTAAATTACTACGAATAAATTTGTATCCACAAAATGTTGGAAAATGTTTATTTACGGGGAGTTAAATAAATTTTTTATTTGATGAATCATACTCTAAAAAAAACTAGAAAGAAAGGTAGGTGGTGATCGGCAATAATAGTTGTAAGGTGGTGGTGGTCATGATTGTATTGGGGAGATTGCCTATGATGGTTGTGCAATGGTGTCCGGTTTTGGTCAGATAGAAGTTAGTGGTAGAGGTGGTTGGTACTGGTGGTTTGCGAAGGAGGCGGTTAGTGGTGGTGACTAGTTGTGAAGGTGCTTGGTGATTGTGGTGGTGACCGGCTATGGTGGTTGCGCAATGGAGGCTGGTGGTGGAGGTAATTGGTTAGTGGCAGTAGTTGACTGTTGTGGAGATGGTTAGTCGTTGGTATCAATGCATATAGAACTTGTATTGATGTCTAGATATCGAGATCCTCCTGAGGTGACAGATTAATTGGATATTGGCATTCTCCCAACTTCTTGGCAAAAAGATTATATATCAATTGGATCTATGCACTTCTCTTATTTTCTTCTTGAAATATGTGCACCAATTGCATATTTGACATTTTACTAAAGGAATCATTTGAAGCAAGAAAAGAAACAAAGAATCTGCAAGTGACACATATAATTTTTTTCGCCTTGACTGTATGGTATATACTGATTTAAAGTTATTGAGACTTCAGGTAAAGATTTTTCTTCCAGTTGCTAGACTGTGCAATGATAGAATCTGGCAAGTTTAGGATGTTGAATGGCTCTTTTTAAGATTAATCTAGGATGCTGAATAGTGTGCCATTGACTTCAATTATTCCTTAAGAGTTTGGTACTAGGGAGTTTGTTGCATGAAAAGTGGCTAATATAATTATGGGAAAGAAGTAGCAAAGGTTGACACAAATATTCTTTGTTTTATGTATCTCATGATTTTCTCTTCAATGGTCACTTGCAGATCAATCGCACTCAAAGTGAGTTTTCATCTTACAAGGCTCGTGCTCACGCACTTCTCCAGCGAAAGGATGCTGAATTGGCTGCTGCTAGGGACAGCGAACAACTTAAAGCACTGGAGGAAGCATTGAAGGTATATGCTTTTGGGTGTAACTAGTGAAATGCTTTGGCTTAATAGTTTAACATTAAGGTCATTTAATTGTTGCTAAGACATCAAAAAATTTGCTCTTTCAGGAAGTGGAGAAAGAGGTAATGTCAGTCTCTTCTGAAAGGGATAGAGCCCTTCAAGATCTAAAGAGCACCTTAATTAATCATGAGAAGGAACTTTCGGACAGGTAATCTGAGTTTGATGACTTGTTAGATGTTCACCTGAACACAAATTATACGCAGTTCATTTTTGGGGTGTTTTTTCACAGATTAAACTCACAAACATTGACATGGACACACTCTTCAGTTCATTTACACCCTCGGGCAAAATAGTTTTAAATCTAACTTGTAGTAGTACAGAGTTTTTACAGATTTGATGTAGCTTTCATTTGCTGAAAGAGAATGAATTGACACACTTCTCCATTAAATCATTTCCAGAGATGAAGCTCTTCGTGCTACAGAGCAACGGATCAGAAGCATGGAAATGAAGTTCAATTCTGCTATTTCTGCTCACCAAAAAGAGAAGGAAGCATGGGAAATAAGCCTTCAAAATGTAGAAGAAACATGGCGATGTAATTTCTTAGGATGATATAATAATCAGCTTTCTATTCTTGAATTGCCATTTATTCAGCTTCCAAATGGAAAACTAATTCTAGATACTGCTTTGCAGTGAAATGTGATGCAT</genome_strand>
        <mrna_strand>GAA...........................................................................GTCAACTGGAGTCACAGTTATCTGCTCAGTCTCAGGT-GTAAACTCAAAAGAGGCTGAATTGATGGTGGCCAAAGAAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAATCGCACTCAAAGTGAATTTTCATCTTACAAGGCTCGTGCTCACGCACTTCT-TAGCGAAAGGATGCTGAATTGGCTG-TG-TAGAGACAGCGAACAACTTAAAGCACTGGAGGAAGCATTAAAG.....................................................................................................GAAGTGGAGAAAGAGGTAATGTCAGTCTCTTCTGAAAGGGA-AAAGCCCTTCAAGATCTAAAGAACA-CTTTNTTAATCATGAGAAGGAACTTTCAGACAG..........................................................................................................................................................................................................................................................A-AAGAAGCT-TTTTTGCTACAGAGCAACGGATCAGAAGCATGGAAATGAAGCTCAATTCTGCTGTTTCTGCCCACCAAAAAGAGAAGGAAGCATGGGAAATAAGCCTTCAAAATGTAGAAGAAACATGGCGAT..................................................................................................TGAAATGTGATGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E266746" ref_strand="+" ref_description="SGN-E266746 [cLEI-7-K13]">
      <seq>tgccattcactcagaacaaagctggagattgctgagagtaactgcatccgtgccgagattgaagcggccaaatttagaagtcaactggagtcacagttatctgctcagtcccaggtattaaactcaaaagaggctgaattgatggcggccaaagaagagatcaatcgcactcaaagtgagttttcatcttacaaggctcgtgctcacgcacttctccagcgaaaggatgctgaattggctgctgctagggacagcgaacaacttaaagcactggaggaagcattgaaggaagtggagaaagaggtaatgtcagtctcttctgaaagggatagagcccttcaagatctaaagagcaccttaattaatcatgagaaggaactttcggacagagatgaagctcttcgtgctacagagcaacggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="-" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="30262" stop="27639"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29962" g_stop="29884" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29883" i_stop="29809" i_length="75">
            <donor d_prob="0.418" d_score="1.00"/>
            <acceptor a_prob="0.889" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29808" g_stop="29729" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="159" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29728" i_stop="28554" i_length="1175">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28553" g_stop="28425" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="288" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28424" i_stop="28324" i_length="101">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.867" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28323" g_stop="28223" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="389" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28222" i_stop="27973" i_length="250">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.903" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27972" g_stop="27939" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="423" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="-" ref_id="SGN-E266746" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266746" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29962" e_stop="29884"/>
          <exon e_start="29808" e_stop="29729"/>
          <exon e_start="28553" e_stop="28425"/>
          <exon e_start="28323" e_stop="28223"/>
          <exon e_start="27972" e_stop="27939"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCATTCACTCAGAACAAAGCTGGAGATTGCTGAGAGTAACTGCATCCGTGCCGAGATTGAAGCGGCCAAATTTAGAAGTATAATTCTGTATACTGGTTAGTTACCTTGTTTAGGCGATGAATTTGGAGCTCATACTTGTATTGACATTGTAGGTCAACTGGAGTCACAGTTATCTGCTCAGTCCCAGGTATTAAACTCAAAAGAGGCTGAATTGATGGCGGCCAAAGAAGAGGTGATCTCTTATTTAACTTATCTGTATTTCTCCTCTCACAAATGTTTAGGCCCCATTTGTTTTTATAAGATTATGACGTCGTAATGTGTATACACGTTTAGATATTTAATATTGTATCTAGATCTTAACGCTGAAAAACTAACATTGTTTTTTCAGCATCTGAATGTGGATAATTTATCTTTATTTTAAAGCTAATTAATAGATAGAATTTCAAGTAAATTACTACGAATAAATTTGTATCCACAAAATGTTGGAAAATGTTTATTTACGGGGAGTTAAATAAATTTTTTATTTGATGAATCATACTCTAAAAAAAACTAGAAAGAAAGGTAGGTGGTGATCGGCAATAATAGTTGTAAGGTGGTGGTGGTCATGATTGTATTGGGGAGATTGCCTATGATGGTTGTGCAATGGTGTCCGGTTTTGGTCAGATAGAAGTTAGTGGTAGAGGTGGTTGGTACTGGTGGTTTGCGAAGGAGGCGGTTAGTGGTGGTGACTAGTTGTGAAGGTGCTTGGTGATTGTGGTGGTGACCGGCTATGGTGGTTGCGCAATGGAGGCTGGTGGTGGAGGTAATTGGTTAGTGGCAGTAGTTGACTGTTGTGGAGATGGTTAGTCGTTGGTATCAATGCATATAGAACTTGTATTGATGTCTAGATATCGAGATCCTCCTGAGGTGACAGATTAATTGGATATTGGCATTCTCCCAACTTCTTGGCAAAAAGATTATATATCAATTGGATCTATGCACTTCTCTTATTTTCTTCTTGAAATATGTGCACCAATTGCATATTTGACATTTTACTAAAGGAATCATTTGAAGCAAGAAAAGAAACAAAGAATCTGCAAGTGACACATATAATTTTTTTCGCCTTGACTGTATGGTATATACTGATTTAAAGTTATTGAGACTTCAGGTAAAGATTTTTCTTCCAGTTGCTAGACTGTGCAATGATAGAATCTGGCAAGTTTAGGATGTTGAATGGCTCTTTTTAAGATTAATCTAGGATGCTGAATAGTGTGCCATTGACTTCAATTATTCCTTAAGAGTTTGGTACTAGGGAGTTTGTTGCATGAAAAGTGGCTAATATAATTATGGGAAAGAAGTAGCAAAGGTTGACACAAATATTCTTTGTTTTATGTATCTCATGATTTTCTCTTCAATGGTCACTTGCAGATCAATCGCACTCAAAGTGAGTTTTCATCTTACAAGGCTCGTGCTCACGCACTTCTCCAGCGAAAGGATGCTGAATTGGCTGCTGCTAGGGACAGCGAACAACTTAAAGCACTGGAGGAAGCATTGAAGGTATATGCTTTTGGGTGTAACTAGTGAAATGCTTTGGCTTAATAGTTTAACATTAAGGTCATTTAATTGTTGCTAAGACATCAAAAAATTTGCTCTTTCAGGAAGTGGAGAAAGAGGTAATGTCAGTCTCTTCTGAAAGGGATAGAGCCCTTCAAGATCTAAAGAGCACCTTAATTAATCATGAGAAGGAACTTTCGGACAGGTAATCTGAGTTTGATGACTTGTTAGATGTTCACCTGAACACAAATTATACGCAGTTCATTTTTGGGGTGTTTTTTCACAGATTAAACTCACAAACATTGACATGGACACACTCTTCAGTTCATTTACACCCTCGGGCAAAATAGTTTTAAATCTAACTTGTAGTAGTACAGAGTTTTTACAGATTTGATGTAGCTTTCATTTGCTGAAAGAGAATGAATTGACACACTTCTCCATTAAATCATTTCCAGAGATGAAGCTCTTCGTGCTACAGAGCAACGGATC</genome_strand>
        <mrna_strand>TGCCATTCACTCAGAACAAAGCTGGAGATTGCTGAGAGTAACTGCATCCGTGCCGAGATTGAAGCGGCCAAATTTAGAA...........................................................................GTCAACTGGAGTCACAGTTATCTGCTCAGTCCCAGGTATTAAACTCAAAAGAGGCTGAATTGATGGCGGCCAAAGAAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAATCGCACTCAAAGTGAGTTTTCATCTTACAAGGCTCGTGCTCACGCACTTCTCCAGCGAAAGGATGCTGAATTGGCTGCTGCTAGGGACAGCGAACAACTTAAAGCACTGGAGGAAGCATTGAAG.....................................................................................................GAAGTGGAGAAAGAGGTAATGTCAGTCTCTTCTGAAAGGGATAGAGCCCTTCAAGATCTAAAGAGCACCTTAATTAATCATGAGAAGGAACTTTCGGACAG..........................................................................................................................................................................................................................................................AGATGAAGCTCTTCGTGCTACAGAGCAACGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E563630" ref_strand="+" ref_description="SGN-E563630 [2071]">
      <seq>tatctgctcagtctcaggtgttaaactcaaaagaggctgaattggtggtggccaaagaagagatcaatcgcactcaaagtgaattttcatcttacaatgctcggtgctcacgcacttcttcagcgaaaggatgctgaattggctgctgctagagacagcgaacaacttaaagcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="-" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="30090" stop="28141"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29790" g_stop="29729" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29728" i_stop="28554" i_length="1175">
            <donor d_prob="0.994" d_score="0.92"/>
            <acceptor a_prob="0.993" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28553" g_stop="28441" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="176" r_length="114" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="-" ref_id="SGN-E563630" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>175</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E563630" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29790" e_stop="29729"/>
          <exon e_start="28553" e_stop="28441"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTGCTCAGTCCCAGGTATTAAACTCAAAAGAGGCTGAATTGATGGCGGCCAAAGAAGAGGTGATCTCTTATTTAACTTATCTGTATTTCTCCTCTCACAAATGTTTAGGCCCCATTTGTTTTTATAAGATTATGACGTCGTAATGTGTATACACGTTTAGATATTTAATATTGTATCTAGATCTTAACGCTGAAAAACTAACATTGTTTTTTCAGCATCTGAATGTGGATAATTTATCTTTATTTTAAAGCTAATTAATAGATAGAATTTCAAGTAAATTACTACGAATAAATTTGTATCCACAAAATGTTGGAAAATGTTTATTTACGGGGAGTTAAATAAATTTTTTATTTGATGAATCATACTCTAAAAAAAACTAGAAAGAAAGGTAGGTGGTGATCGGCAATAATAGTTGTAAGGTGGTGGTGGTCATGATTGTATTGGGGAGATTGCCTATGATGGTTGTGCAATGGTGTCCGGTTTTGGTCAGATAGAAGTTAGTGGTAGAGGTGGTTGGTACTGGTGGTTTGCGAAGGAGGCGGTTAGTGGTGGTGACTAGTTGTGAAGGTGCTTGGTGATTGTGGTGGTGACCGGCTATGGTGGTTGCGCAATGGAGGCTGGTGGTGGAGGTAATTGGTTAGTGGCAGTAGTTGACTGTTGTGGAGATGGTTAGTCGTTGGTATCAATGCATATAGAACTTGTATTGATGTCTAGATATCGAGATCCTCCTGAGGTGACAGATTAATTGGATATTGGCATTCTCCCAACTTCTTGGCAAAAAGATTATATATCAATTGGATCTATGCACTTCTCTTATTTTCTTCTTGAAATATGTGCACCAATTGCATATTTGACATTTTACTAAAGGAATCATTTGAAGCAAGAAAAGAAACAAAGAATCTGCAAGTGACACATATAATTTTTTTCGCCTTGACTGTATGGTATATACTGATTTAAAGTTATTGAGACTTCAGGTAAAGATTTTTCTTCCAGTTGCTAGACTGTGCAATGATAGAATCTGGCAAGTTTAGGATGTTGAATGGCTCTTTTTAAGATTAATCTAGGATGCTGAATAGTGTGCCATTGACTTCAATTATTCCTTAAGAGTTTGGTACTAGGGAGTTTGTTGCATGAAAAGTGGCTAATATAATTATGGGAAAGAAGTAGCAAAGGTTGACACAAATATTCTTTGTTTTATGTATCTCATGATTTTCTCTTCAATGGTCACTTGCAGATCAATCGCACTCAAAGTGAGTTTTCATCTTACAAGGCTC-GTGCTCACGCACTTCTCCAGCGAAAGGATGCTGAATTGGCTGCTGCTAGGGACAGCGAACAACTTAAAGCACT</genome_strand>
        <mrna_strand>TATCTGCTCAGTCTCAGGTGTTAAACTCAAAAGAGGCTGAATTGGTGGTGGCCAAAGAAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAATCGCACTCAAAGTGAATTTTCATCTTACAATGCTCGGTGCTCACGCACTTCTTCAGCGAAAGGATGCTGAATTGGCTGCTGCTAGAGACAGCGAACAACTTAAAGCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E542405" ref_strand="-" ref_description="SGN-E542405 [TUS-63-L5](-)">
      <seq>ctcgagtttttctttctcgattgatagatactcttctcaataaagggatttatttagtattagacaccgtttcactctttttgccgcttggacattttacaagcatctagatctgcagttccccactgcttcatccatattacttctcagttgatggatgaaacagtttaatccctacttctcagaagctaaagaggaaataatggagggagatattagtagtggggctgcagataatcacacggaagatgctagcaaaacagaggcacagttcaatagcttcaatattgagagtgatcatgtaaaggataacggaatatgtgagagtcacgaacatacaggtgatagccatgatgatcttgtacaaatgctcgtagaacttaatttccagaatgaatatctgaaatctcagattgtgggatggcaaagcatcaacatatattctgatgactctggtcaacaaattaaaacggctgcacatgaaaatgtggcaagtgataattcagaagaccttaatgagaagatcgaatctttgaatagagaacttttagaggaaaagcaaacacgaggtgctgcagaggtagcactaaagcatcttcaaactctatatttggaagctgacacaaaggcccaagagttgtctgtcaaagttgctgaagtacaaataagatggatcaggaaataaaagaacgtgatgagaagtactcagagctagactcgaagttcaacagacttcacaaacgggcaaagcagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="-" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="36244" stop="34116"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35945" g_stop="35795" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35794" i_stop="35224" i_length="571">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35223" g_stop="34715" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="659" r_length="509" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34714" i_stop="34513" i_length="202">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34512" g_stop="34416" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="660" r_stop="755" r_length="96" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="-" ref_id="SGN-E542405" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542405" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="35945" e_stop="35795"/>
          <exon e_start="35223" e_stop="34715"/>
          <exon e_start="34512" e_stop="34416"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGAGATTTTTCTTTCTCGATTGATAGATACTCTTCTCAATAAAGGGATTTATTTAGTATTAGACACCGTTTCACTCTTTTTGCCGCTTGGACATTTTACAAGCATCTAGATCTGCAGTTCCCCACTGCTTCATCCATATTACTTCTCAGGTCAGCCCTTTTAATGCTTTTCAATTGTATCTAAAATGATGCTTTCTGCATACATTTTTTCTGTTGTGTTAGTGCATTGCTAAAATTTAGTTAATCGTAGGATCTGATTGATACTGTAATCTGCACCTCTTTAATTTCATTGCACCAGAAATGTGAATTTAACTGTTGAAGTAAGCCTGAATTTCTCTTATCCAATTTTCTCGAATTTCATTTTCTTTGCGAAACTGGTGATAAACCTCAACTGCCATCGGGTTTTCTGGAAAAAAAAATGGAGGAGGGGGCAATTTCTACTAAAGCTACATTGGTGTGATCAATGTGAGGTGGGTGATACAGAGAGAGTCTATTATGATGTTTTGAATCTTGTACTAGCTTCGGGTTAATCAAATTAGCTTGACGGTGGATCTTGCTATAAAACTTTTATTTACTTACCAGAATTTGGCATTCAAATGTTGATATTTTTGAAGCCAATGTTTGTGTCTTTTTATCTCGATTCTTTAATTTCAATGCGGAGTTGCGTGATCCATATTAGTGGATTATTTATTTTGTGTTTTGTGATGGTTACTTATTGCAGTTGATGGATGAAACAGTTTAATCCCTACTTCTCAGAAGCTAAAGAGGAAATAATGGAGGGAGATATTAGTAGTGGGGCTGCAGATAATCACACGGAAGATGCTAGCAAAACAGAGGCACAGTTCAATAGCTTCAATATTGAGAGTGATCATGTAAAGGATAACGGAATATGTGAGAGTCACGAACATACAGGTGATAGCCATGATGATCTTGTACAAATGCTCGTAGAACTTAATTTCCAGAATGAATATCTGAAATCTCAGATTGTGGGATGGCAAAGCATCAACATATATTCTGATGACTCTGGTCAACAAATTAAAACGGCTGCACATGAAAATGTGGCAAGTGATAATTCAGAAGACCTTAATGAGAAGATCGAATCTTTGAATAGAGAACTTTTAGAGGAAAAGCAAACACGAGGTGCTGCAGAGGTAGCACTAAAGCATCTTCAAACTCTATATTTGGAAGCTGACACAAAGGCCCAAGAGTTGTCTGTCAAAGTTGCTGAAGGTTGTGATTTGCTTTGACTTCCATTTTCTTCTTCATGTTTGTTGAATTCAACATCAATATGGAACTCGGATTTTATGATAAGTTCTAAATGTTGGTGATGTACTTCCATTGTTAGTTGCAGATTTTTTGGTTTTCCTTTTTTAGTTTCAGTTGACAAAGAAGATATGCTATTCTGAAGTCTATAAATGGTTTGTTTGAATAGTACAAAATAAGATGGATCAGGAAATAAAAGAACGTGATGAGAAGTACTCAGAGCTAGACTCGAAGTTCAACAGACTTCACAAACGGGCAAAGCAGCG</genome_strand>
        <mrna_strand>CTCGAG-TTTTTCTTTCTCGATTGATAGATACTCTTCTCAATAAAGGGATTTATTTAGTATTAGACACCGTTTCACTCTTTTTGCCGCTTGGACATTTTACAAGCATCTAGATCTGCAGTTCCCCACTGCTTCATCCATATTACTTCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATGGATGAAACAGTTTAATCCCTACTTCTCAGAAGCTAAAGAGGAAATAATGGAGGGAGATATTAGTAGTGGGGCTGCAGATAATCACACGGAAGATGCTAGCAAAACAGAGGCACAGTTCAATAGCTTCAATATTGAGAGTGATCATGTAAAGGATAACGGAATATGTGAGAGTCACGAACATACAGGTGATAGCCATGATGATCTTGTACAAATGCTCGTAGAACTTAATTTCCAGAATGAATATCTGAAATCTCAGATTGTGGGATGGCAAAGCATCAACATATATTCTGATGACTCTGGTCAACAAATTAAAACGGCTGCACATGAAAATGTGGCAAGTGATAATTCAGAAGACCTTAATGAGAAGATCGAATCTTTGAATAGAGAACTTTTAGAGGAAAAGCAAACACGAGGTGCTGCAGAGGTAGCACTAAAGCATCTTCAAACTCTATATTTGGAAGCTGACACAAAGGCCCAAGAGTTGTCTGTCAAAGTTGCTGAAG..........................................................................................................................................................................................................TAC-AAATAAGATGGATCAGGAAATAAAAGAACGTGATGAGAAGTACTCAGAGCTAGACTCGAAGTTCAACAGACTTCACAAACGGGCAAAGCAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E328549" ref_strand="+" ref_description="SGN-E328549 [cTOC-23-K22]">
      <seq>atactcttctcaataaagggatttatttagtattagacaccgtttcactctttttgccgcttggacattttacaagcatctagatctgcagttccccactgcttcatccatattacttctcagttgatggatgaaacagtttaatccctacttctcagaagctaaagaggaaataatggagggagatattagtagtggggctgcagataatcacacggaagatgctagcaaaacagaggcacagttcaatagcttcaatattgagagtgatcatgtaaaggataacggaatatgtgagagtcacgaacatacaggtgatagccatgatgatcttgtacaaatgctcgtagaacttaatttccagaatgaatatctgaaatctcagattgtgggatggcaaagcatcaacatatattctgatgactctggtcaacaaattaaaacggctgcacatgaaaatgtggcaagtgataattcagaagaccttaatgagaagatcgaatctttgaatagagaacttttagaggaaaagcaaacacgaggtgctgcagaggtagcactaaagcatcttcaaactctatatttggaagctgacacaaaggcccaagagttgtctgtcaaagttgctgaagtacnaaataagatggatcaggaaataaaagacgtgatgagaagtactcagagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="-" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="36217" stop="34158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35917" g_stop="35795" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35794" i_stop="35224" i_length="571">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35223" g_stop="34715" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="632" r_length="509" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34714" i_stop="34513" i_length="202">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34512" g_stop="34458" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="686" r_length="54" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="-" ref_id="SGN-E328549" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328549" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35917" e_stop="35795"/>
          <exon e_start="35223" e_stop="34715"/>
          <exon e_start="34512" e_stop="34458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACTCTTCTCAATAAAGGGATTTATTTAGTATTAGACACCGTTTCACTCTTTTTGCCGCTTGGACATTTTACAAGCATCTAGATCTGCAGTTCCCCACTGCTTCATCCATATTACTTCTCAGGTCAGCCCTTTTAATGCTTTTCAATTGTATCTAAAATGATGCTTTCTGCATACATTTTTTCTGTTGTGTTAGTGCATTGCTAAAATTTAGTTAATCGTAGGATCTGATTGATACTGTAATCTGCACCTCTTTAATTTCATTGCACCAGAAATGTGAATTTAACTGTTGAAGTAAGCCTGAATTTCTCTTATCCAATTTTCTCGAATTTCATTTTCTTTGCGAAACTGGTGATAAACCTCAACTGCCATCGGGTTTTCTGGAAAAAAAAATGGAGGAGGGGGCAATTTCTACTAAAGCTACATTGGTGTGATCAATGTGAGGTGGGTGATACAGAGAGAGTCTATTATGATGTTTTGAATCTTGTACTAGCTTCGGGTTAATCAAATTAGCTTGACGGTGGATCTTGCTATAAAACTTTTATTTACTTACCAGAATTTGGCATTCAAATGTTGATATTTTTGAAGCCAATGTTTGTGTCTTTTTATCTCGATTCTTTAATTTCAATGCGGAGTTGCGTGATCCATATTAGTGGATTATTTATTTTGTGTTTTGTGATGGTTACTTATTGCAGTTGATGGATGAAACAGTTTAATCCCTACTTCTCAGAAGCTAAAGAGGAAATAATGGAGGGAGATATTAGTAGTGGGGCTGCAGATAATCACACGGAAGATGCTAGCAAAACAGAGGCACAGTTCAATAGCTTCAATATTGAGAGTGATCATGTAAAGGATAACGGAATATGTGAGAGTCACGAACATACAGGTGATAGCCATGATGATCTTGTACAAATGCTCGTAGAACTTAATTTCCAGAATGAATATCTGAAATCTCAGATTGTGGGATGGCAAAGCATCAACATATATTCTGATGACTCTGGTCAACAAATTAAAACGGCTGCACATGAAAATGTGGCAAGTGATAATTCAGAAGACCTTAATGAGAAGATCGAATCTTTGAATAGAGAACTTTTAGAGGAAAAGCAAACACGAGGTGCTGCAGAGGTAGCACTAAAGCATCTTCAAACTCTATATTTGGAAGCTGACACAAAGGCCCAAGAGTTGTCTGTCAAAGTTGCTGAAGGTTGTGATTTGCTTTGACTTCCATTTTCTTCTTCATGTTTGTTGAATTCAACATCAATATGGAACTCGGATTTTATGATAAGTTCTAAATGTTGGTGATGTACTTCCATTGTTAGTTGCAGATTTTTTGGTTTTCCTTTTTTAGTTTCAGTTGACAAAGAAGATATGCTATTCTGAAGTCTATAAATGGTTTGTTTGAATAGTACAAAATAAGATGGATCAGGAAATAAAAGAACGTGATGAGAAGTACTCAGAGCT</genome_strand>
        <mrna_strand>ATACTCTTCTCAATAAAGGGATTTATTTAGTATTAGACACCGTTTCACTCTTTTTGCCGCTTGGACATTTTACAAGCATCTAGATCTGCAGTTCCCCACTGCTTCATCCATATTACTTCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATGGATGAAACAGTTTAATCCCTACTTCTCAGAAGCTAAAGAGGAAATAATGGAGGGAGATATTAGTAGTGGGGCTGCAGATAATCACACGGAAGATGCTAGCAAAACAGAGGCACAGTTCAATAGCTTCAATATTGAGAGTGATCATGTAAAGGATAACGGAATATGTGAGAGTCACGAACATACAGGTGATAGCCATGATGATCTTGTACAAATGCTCGTAGAACTTAATTTCCAGAATGAATATCTGAAATCTCAGATTGTGGGATGGCAAAGCATCAACATATATTCTGATGACTCTGGTCAACAAATTAAAACGGCTGCACATGAAAATGTGGCAAGTGATAATTCAGAAGACCTTAATGAGAAGATCGAATCTTTGAATAGAGAACTTTTAGAGGAAAAGCAAACACGAGGTGCTGCAGAGGTAGCACTAAAGCATCTTCAAACTCTATATTTGGAAGCTGACACAAAGGCCCAAGAGTTGTCTGTCAAAGTTGCTGAAG..........................................................................................................................................................................................................TACNAAATAAGATGGATCAGGAAATAAAAG-ACGTGATGAGAAGTACTCAGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E327734" ref_strand="+" ref_description="SGN-E327734 [cTOC-20-G6]">
      <seq>atactcttctcaataaagggatttatttagtattagacaccgtttcactctttttgccgcttggacattttacaagcatctagatctgcagttccccactgcttcatccatattacttctcagttgatggatgaaacagtttaatccctacttctcagaagctaaagaggaaataatggagggagatattagtagtggggctgcagataatcacacggaagatgctagcaaaacagaggcacagttcaatagcttcaatattgagagtgatcatgtaaaggataacggaatatgtgagagtcacgaacatacaggtgatagccatgatgatcttgtacaaatgctcgtagaacttaatttccagaatgaatatctgaaatctcagattgtgggatggcaaagcatcaacatatattctgatgactctggtcaacaaattaaaacggctgcacatgaaaatgtggcaagtgataattcagaagaccttaatgagaagatcgaatctttgaatagagaacttttagaggaaaagcaaacacgaggtgctgcagaggtagcactaaagcatcttcaaactctatatttggaagctgacacaaaggcccaagaagtgtctgtcaaagttgctgaagtacaaaataagatggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="-" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="36217" stop="34196"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35917" g_stop="35795" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35794" i_stop="35224" i_length="571">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35223" g_stop="34715" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="632" r_length="509" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34714" i_stop="34513" i_length="202">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.945" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34512" g_stop="34496" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="649" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="-" ref_id="SGN-E327734" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35917" e_stop="35795"/>
          <exon e_start="35223" e_stop="34715"/>
          <exon e_start="34512" e_stop="34496"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACTCTTCTCAATAAAGGGATTTATTTAGTATTAGACACCGTTTCACTCTTTTTGCCGCTTGGACATTTTACAAGCATCTAGATCTGCAGTTCCCCACTGCTTCATCCATATTACTTCTCAGGTCAGCCCTTTTAATGCTTTTCAATTGTATCTAAAATGATGCTTTCTGCATACATTTTTTCTGTTGTGTTAGTGCATTGCTAAAATTTAGTTAATCGTAGGATCTGATTGATACTGTAATCTGCACCTCTTTAATTTCATTGCACCAGAAATGTGAATTTAACTGTTGAAGTAAGCCTGAATTTCTCTTATCCAATTTTCTCGAATTTCATTTTCTTTGCGAAACTGGTGATAAACCTCAACTGCCATCGGGTTTTCTGGAAAAAAAAATGGAGGAGGGGGCAATTTCTACTAAAGCTACATTGGTGTGATCAATGTGAGGTGGGTGATACAGAGAGAGTCTATTATGATGTTTTGAATCTTGTACTAGCTTCGGGTTAATCAAATTAGCTTGACGGTGGATCTTGCTATAAAACTTTTATTTACTTACCAGAATTTGGCATTCAAATGTTGATATTTTTGAAGCCAATGTTTGTGTCTTTTTATCTCGATTCTTTAATTTCAATGCGGAGTTGCGTGATCCATATTAGTGGATTATTTATTTTGTGTTTTGTGATGGTTACTTATTGCAGTTGATGGATGAAACAGTTTAATCCCTACTTCTCAGAAGCTAAAGAGGAAATAATGGAGGGAGATATTAGTAGTGGGGCTGCAGATAATCACACGGAAGATGCTAGCAAAACAGAGGCACAGTTCAATAGCTTCAATATTGAGAGTGATCATGTAAAGGATAACGGAATATGTGAGAGTCACGAACATACAGGTGATAGCCATGATGATCTTGTACAAATGCTCGTAGAACTTAATTTCCAGAATGAATATCTGAAATCTCAGATTGTGGGATGGCAAAGCATCAACATATATTCTGATGACTCTGGTCAACAAATTAAAACGGCTGCACATGAAAATGTGGCAAGTGATAATTCAGAAGACCTTAATGAGAAGATCGAATCTTTGAATAGAGAACTTTTAGAGGAAAAGCAAACACGAGGTGCTGCAGAGGTAGCACTAAAGCATCTTCAAACTCTATATTTGGAAGCTGACACAAAGGCCCAAGAGTTGTCTGTCAAAGTTGCTGAAGGTTGTGATTTGCTTTGACTTCCATTTTCTTCTTCATGTTTGTTGAATTCAACATCAATATGGAACTCGGATTTTATGATAAGTTCTAAATGTTGGTGATGTACTTCCATTGTTAGTTGCAGATTTTTTGGTTTTCCTTTTTTAGTTTCAGTTGACAAAGAAGATATGCTATTCTGAAGTCTATAAATGGTTTGTTTGAATAGTACAAAATAAGATGGAT</genome_strand>
        <mrna_strand>ATACTCTTCTCAATAAAGGGATTTATTTAGTATTAGACACCGTTTCACTCTTTTTGCCGCTTGGACATTTTACAAGCATCTAGATCTGCAGTTCCCCACTGCTTCATCCATATTACTTCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATGGATGAAACAGTTTAATCCCTACTTCTCAGAAGCTAAAGAGGAAATAATGGAGGGAGATATTAGTAGTGGGGCTGCAGATAATCACACGGAAGATGCTAGCAAAACAGAGGCACAGTTCAATAGCTTCAATATTGAGAGTGATCATGTAAAGGATAACGGAATATGTGAGAGTCACGAACATACAGGTGATAGCCATGATGATCTTGTACAAATGCTCGTAGAACTTAATTTCCAGAATGAATATCTGAAATCTCAGATTGTGGGATGGCAAAGCATCAACATATATTCTGATGACTCTGGTCAACAAATTAAAACGGCTGCACATGAAAATGTGGCAAGTGATAATTCAGAAGACCTTAATGAGAAGATCGAATCTTTGAATAGAGAACTTTTAGAGGAAAAGCAAACACGAGGTGCTGCAGAGGTAGCACTAAAGCATCTTCAAACTCTATATTTGGAAGCTGACACAAAGGCCCAAGAAGTGTCTGTCAAAGTTGCTGAAG..........................................................................................................................................................................................................TACAAAATAAGATGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E542412" ref_strand="-" ref_description="SGN-E542412 [TUS-63-L9](-)">
      <seq>ctcttctcaataaagggatttatttagtattagacaccgtttcactctttttgccgcttggacattttacaagcatctagatctgcagttccccactgcttcatccatattacttctcagttgatggatgaaacagtttaatccctacttctcagaagctaaagaggaaataatggagggagatattagtagtggggctgcagataatcacacggaagatgctagcaaaacagaggcacagttcaatagcttcaatattgagagtgatcatgtaaaggataacggaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="-" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="36214" stop="34755"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35914" g_stop="35795" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35794" i_stop="35224" i_length="571">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35223" g_stop="35055" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="289" r_length="169" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="-" ref_id="SGN-E542412" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>289</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542412" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="35914" e_stop="35795"/>
          <exon e_start="35223" e_stop="35055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTCTCAATAAAGGGATTTATTTAGTATTAGACACCGTTTCACTCTTTTTGCCGCTTGGACATTTTACAAGCATCTAGATCTGCAGTTCCCCACTGCTTCATCCATATTACTTCTCAGGTCAGCCCTTTTAATGCTTTTCAATTGTATCTAAAATGATGCTTTCTGCATACATTTTTTCTGTTGTGTTAGTGCATTGCTAAAATTTAGTTAATCGTAGGATCTGATTGATACTGTAATCTGCACCTCTTTAATTTCATTGCACCAGAAATGTGAATTTAACTGTTGAAGTAAGCCTGAATTTCTCTTATCCAATTTTCTCGAATTTCATTTTCTTTGCGAAACTGGTGATAAACCTCAACTGCCATCGGGTTTTCTGGAAAAAAAAATGGAGGAGGGGGCAATTTCTACTAAAGCTACATTGGTGTGATCAATGTGAGGTGGGTGATACAGAGAGAGTCTATTATGATGTTTTGAATCTTGTACTAGCTTCGGGTTAATCAAATTAGCTTGACGGTGGATCTTGCTATAAAACTTTTATTTACTTACCAGAATTTGGCATTCAAATGTTGATATTTTTGAAGCCAATGTTTGTGTCTTTTTATCTCGATTCTTTAATTTCAATGCGGAGTTGCGTGATCCATATTAGTGGATTATTTATTTTGTGTTTTGTGATGGTTACTTATTGCAGTTGATGGATGAAACAGTTTAATCCCTACTTCTCAGAAGCTAAAGAGGAAATAATGGAGGGAGATATTAGTAGTGGGGCTGCAGATAATCACACGGAAGATGCTAGCAAAACAGAGGCACAGTTCAATAGCTTCAATATTGAGAGTGATCATGTAAAGGATAACGGAATA</genome_strand>
        <mrna_strand>CTCTTCTCAATAAAGGGATTTATTTAGTATTAGACACCGTTTCACTCTTTTTGCCGCTTGGACATTTTACAAGCATCTAGATCTGCAGTTCCCCACTGCTTCATCCATATTACTTCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATGGATGAAACAGTTTAATCCCTACTTCTCAGAAGCTAAAGAGGAAATAATGGAGGGAGATATTAGTAGTGGGGCTGCAGATAATCACACGGAAGATGCTAGCAAAACAGAGGCACAGTTCAATAGCTTCAATATTGAGAGTGATCATGTAAAGGATAACGGAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E574168" ref_strand="-" ref_description="SGN-E574168 [33593]">
      <seq>ggatcatgccactggtgttgtaattggtgaaactgctggtcatagggaatagagtttcacttatgcagggtgtaaccttgggaggaactgggaaagagattggtgataggcatcctaaaataggtcaaggtgcactgattggagctagtgcaactatacttggaaatataaaaataggggaaggtgcaatggttggtgctggttcccttgtgatgaaggatgttcctccccacagtatggtgacaggaataccagcaaaggtgattggttatgtagatgatcaagatccatctttaactatgaagcatgatgccagcaaggagttctttaaacaagtagccattagctgcaaggaagcaagatccaatggagcagttgcttcaaaggacgatggctcaacatgagattaatgaagacacatattttcatttgactattaaccccaattcacttcaatgtgtgaaaatgattttagtattttcaccatctttaatactactataggatttctgaaaatagaaaaataaagctccttctcctttaaagattgatcatcattcaatcgacgtgtaatgccatgtaatgtgtccgttctaaattatgtatttctttctccagcagatttgtcactttgtatatttgtttgaataaatgctataatgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="-" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="41311" stop="37169"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41011" g_stop="40945" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40944" i_stop="39248" i_length="1697">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39247" g_stop="39081" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="235" r_length="167" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39080" i_stop="38984" i_length="97">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38983" g_stop="38910" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="309" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38909" i_stop="38069" i_length="841">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38068" g_stop="38009" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="369" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38008" i_stop="37769" i_length="240">
            <donor d_prob="0.915" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="37768" g_stop="37468" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="665" r_length="296" r_score="0.870"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="-" ref_id="SGN-E574168" ref_strand="-">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E574168" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="41011" e_stop="40945"/>
          <exon e_start="39247" e_stop="39081"/>
          <exon e_start="38983" e_stop="38910"/>
          <exon e_start="38068" e_stop="38009"/>
          <exon e_start="37768" e_stop="37468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCATGCCACTGGTGTTGTAATTGGTGAAACTGCT-GTCATAGGGAATAGAGTTTCACTTATGCAGGTGAGTTATGCCGATTCCTATACGTTGCGTGTTGGTGTGTCATTTAATACCTATCTTCTGCACTGTAGATTTCTGATTGAGTGGAGGATAAGATAATTACACTTTTTCCTTATTTTTTATTTCACTTTGCCTTCAGATTAAAAGATCGAACAGAAATTTGAGTGTCATGGTAAAATACAAGTATCTATATGCCTGACAACATTTATTAGAGTTTTCGAGCATACAATGTTAACAAATTGTTGATCAAAATAACTAATAACTGATAGAAAATTCTGTTATTGTAAAGGCTGGTACAGATGTTCTCCTTTGGAGCCTGACAGCAGTGGTTTCCCTAGCCCTCTAAGTGATTGACTGAATCCGGTAGATGTTTAGGAGTACCTTTCAATGAGTGGAGTGTGTTTTATGTTTACCCTATAATTTTAAATTTGCAACTAGAAAATTGGTTTGTCATCTATCCCTTTTCAATCGTTTATCCTTCAACTTCTTGAAAAAATTGAAAAACCCTTTAAAAAATACTCTAGAGCCCCCTACCCTCTCCTCCCAACAACCAATCCTAAAACTCTTTTTAGCAAAACTTTCCTCAACTTCAGTTCCTACATAAGTCAACCCCCCTTCCAGAGCTCTGCCAGTTCATGAGGTGTGGATTGTTTTGCTTGAATTTGTTGTGGCAGGTAGGGTATACCATCTAATCTATGTTGCATGTGATGCAGAGAGTATAGATAGTACAAGAATCAGTTCATTCTTCCACCATAACATAAACGTATTTGTGGACATGAGGGTAATCCTGTCAAAAGATTCTTCACATGAGGTGCAATAGTATAGTTTTTGTGTAGTGATTTCTAGTGATGTCTTGAGGTGGCAACTAGTGGGAATCCTTCTATGTGAACGGAAACGGATTCCTTAAGCATCTGTTACCTAAATAATTCATTCCATCACCTTGAATATCATCAATCTGTACTATATAAGCTGGGAAACTTGTACTATATAAGCTGGGAAACTTGAATCTCATGGGGAAGTTCATACGTCCTCTATCCCGAAGATCGTCTAAATCGCCGTTTTGGTCACTCACAAAGTTGTGTCCGTTTTTCTAAAACGGAAGTAAATAAACTTCGCACAACAAAATGTTTGGTGTTTGTTACACTCGTCAGTATTCTTCCATCTTCTTCTTCTTCTATAACACTATACTCAAAATACAGCTCACATGTCCTTGCAACAAAATACTAAACAAATATTTTTAAAGGCTTGTCCTAATAAGTGCACAAAGTGAAAGCTGGATAAATTGGGAGGGATTAGTTGCATTTTATTTGCCTCGACCAATTTATGGGAGAGTTCTTATACTTGTCATTGGACAAACTTAAACTTTTGAACCCTGTATCGTGTCATGAAATCCATTTAGTGTCTCCCAGGTACTGAGCACGTAATGAGTAGACAGTCTGCCACTGTGAATCTGTGCTCTGACCAGCTTAAACTTTCAATTTCCAGATCCTATTATGAAGCTCATTTATTGCCTCCCAGCTGCTGAGTGGGTTATGAGTAGACTGCAGACACCCAGGCTCTTCCTCTTGTATTTGTATTTAACACAATATAACTGATTATTTTATCCTCCACATCATGTCTGTAGATTCATTATGTGGAGATGTTTGTCAGTATAAATTCTGTTTAGTACTCCTTTTTTCACCTGAATATATTTTGCACAGGGCGTAACCTTGGGAGGTACTGGGAAAGAGATTGGTGATAGGCATCCCAAAATAGGTCAAGGTGCACTGATTGGAGCTAGTGCAACTATACTTGGAAATATAGAAATAGGGGAAGGTGCAATGGTTGGTGCTGGTTCCCTTGTGATGAAGGATGTTCCTCCCCACAGGTTGAGTATTATATATTTAAATTTCTGGTTCATTTGTAAAGTAGTTCTTATAAGCATTGATATACTGGTTGCAATGTGCCGGCCTTTGGTTTTACAGTATGGTGACAGGAATACCAGCAAAGGTGATTGGTTATGTAGATGATCAAGATCCATCTTTAACTATGAAGCATGGTATGTCAAAGATGTTTGCTTTAGTAGTAGTATATTCTTTTCTCTCGTAAATAGTACTGTGGTTAGTTTTATTATGATAAATATGCCACATATGTATGTATATGTCTTCTCTTGCAAGAGTTAACTCATTTGTATGATTTACTTGAGGGATAAGAGGAACAATATGATGGTTTTCTTTATTAGGTTGTTTGGGTCTTGGAGGATGGTAAAAGTGGTAATTCTGACTCTAGAGGTTTTCCTGGAATATCTGATTGGAGTTGCTTTGTTTAAAATAGATTTGCTTGTTTACATGAATAAGGGAACAATAAGGGGGAGAAAAGAGATTCAGCATTTAACCCTCAACATTTAATCCCTTCCCTAAGTTTTAAGGAAGCGGCGCCGATAGGTTTGGAAATATGAGAGAGAGTATATTATTGAGCATATTGACGTTATCCTTGCCATGAATTAAAATAAAGGAGATCCTAGATGGAAACTTAGACTGAAACATGAAGGTGTAATACAATTGGATTAGGTAAAGAAGGCCGAAGGCCATGATCCGTAAATCTTTACTCAATCAAATTATGATGATGTTTGACAAAGTTGAAGTAGAAGTCATAATAAGAAGACTTTCTCGCTGGAATTGTTTCTAATTTCTTTGAATTAGTAAGACTTGACTTATTAGACCCCTGAATTCTCACCAGTCGAATATCCTGATGGCTCATACTTGCTCATGATATACTGAAACATTCCTTTGTAGTTTGCAGTGATTGCTCAAGAGCTACCAACAGGAAACTTTTATTGTCTTCTTCTAACCCTATGCTTAGAAGGTAACTGCTCGTTGCTTTTTATTGTCATATTGCAGATGCCAGCAAGGAGTTCTTTAAACAAGTAGCCATTCGCTGCAAGGAAGCAAGATCCAATGGTGAGATTTCGTTATGCCAGTATGTTGCTTTAAGTAGGGATATATTGCCTTAGTTGGAACAAACCGAGAGTCATCCAGTTGAACTTGAGCGTTGCCCCTACAGCAGCTTTTGTCACATCCCAATCCAATGATAATGATGTTATAGATATTCCCAACTCCAGTAGTGAAATCTTTTTTACTCAAGTTTTTGTTGTATTAGTAGAATGACATAACTCTACTCTGTATCTCTCTTCTTGACAGGAGCGGTTGCTTCAAAGGACGATGGCTCAACATGAGATTGATGAAGATAC--ATCTTCGTTTGACTATTAACCCCCAATTCACTTCAATGTGTGAAAATGATTTTAGTATTTTCACCATCTTTAATACTACTATAGGATTTCTAAAAATAGAAAAAATAAAGCT-C--CT-CTTTAAAGATTGATCATCATTCAATCGACGTGTAATGCCATGTATGTGTGCCCTTTTAAATTATGTTACTGTATTATTTCTTTCTCCAGGAGATTTGTCATTTTGTATATTTGTTTGAATTAATGCTATAACGAAA</genome_strand>
        <mrna_strand>GGATCATGCCACTGGTGTTGTAATTGGTGAAACTGCTGGTCATAGGGAATAGAGTTTCACTTATGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTAACCTTGGGAGGAACTGGGAAAGAGATTGGTGATAGGCATCCTAAAATAGGTCAAGGTGCACTGATTGGAGCTAGTGCAACTATACTTGGAAATATAAAAATAGGGGAAGGTGCAATGGTTGGTGCTGGTTCCCTTGTGATGAAGGATGTTCCTCCCCACAG.................................................................................................TATGGTGACAGGAATACCAGCAAAGGTGATTGGTTATGTAGATGATCAAGATCCATCTTTAACTATGAAGCATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCAGCAAGGAGTTCTTTAAACAAGTAGCCATTAGCTGCAAGGAAGCAAGATCCAATG................................................................................................................................................................................................................................................GAGCAGTTGCTTCAAAGGACGATGGCTCAACATGAGATTAATGAAGACACATATTTTCATTTGACTATTAA-CCCCAATTCACTTCAATGTGTGAAAATGATTTTAGTATTTTCACCATCTTTAATACTACTATAGGATTTCTGAAAATAG-AAAAATAAAGCTCCTTCTCCTTTAAAGATTGATCATCATTCAATCGACGTGTAATGCCATGTA-ATGTGTCCGTTCTAA--A--TTA-TG---TATTTCTTTCTCCAGCAGATTTGTCACTTTGTATATTTGTTTGAATAAATGCTATAATGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E298263" ref_strand="+" ref_description="SGN-E298263 [cLEW-18-K8]">
      <seq>ttctttccaaccgtctgcaaaatcctacacttttggcaactgaattaatggacatattctctgatgtaataatgcacaatcggtgcatccaatgctctattcgacttgatttacaggcatgtaaagatagagatccttcatgtttgtcatactgttctgctcttttgtaccttaagggttatcatgctttacaaacacatcgagttgcacatacgctatggaatcaagggcgcaaagtcttggcattggcgttacaaagtcgagttagtgaggtttttggagttgatatacatccagctgcccaaattggagagggaattcttctggatcatgccactggtgttgtaattggtgaaactgctgtcatagggaatagagtttcacttatgcagggcgtaaccttgggaggtactgggaaagagattggtgataggcatcccaaaataggtcaaggtgcactgattggagctagtgcaactatacttggaaatatagaaataggggaaggtgcaatggttggtgctggttcccttgtgatgaaggatgttcctccccacaggttgagtattatatattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="-" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="42454" stop="38762"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42154" g_stop="42039" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42038" i_stop="41947" i_length="92">
            <donor d_prob="0.716" d_score="1.00"/>
            <acceptor a_prob="0.765" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41946" g_stop="41887" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="176" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41886" i_stop="41441" i_length="446">
            <donor d_prob="0.518" d_score="1.00"/>
            <acceptor a_prob="0.714" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41440" g_stop="41345" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="272" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41344" i_stop="41241" i_length="104">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41240" g_stop="41216" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="297" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41215" i_stop="41040" i_length="176">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41039" g_stop="40945" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="392" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="40944" i_stop="39248" i_length="1697">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="39247" g_stop="39062" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="578" r_length="186" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="-" ref_id="SGN-E298263" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298263" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42154" e_stop="42039"/>
          <exon e_start="41946" e_stop="41887"/>
          <exon e_start="41440" e_stop="41345"/>
          <exon e_start="41240" e_stop="41216"/>
          <exon e_start="41039" e_stop="40945"/>
          <exon e_start="39247" e_stop="39062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTCCAACCGTCTGCAAAATCCTACACTTTTGGCAACTCAATTAATGGACATATTCTCTGATGTAATAATGCACAATCGGTGCATCCAATGCTCTATTCGACTTGATTTACAGGTGCCCTCGGGATTCCATGAATCTCAAATACATTCTCTCTTTATACTTTTTGGCAAGTATTAACAATTCCTTTTGTCCCTCCTCCTTGTCAGGCATGTAAAGATAGAGATCCTTCATGTTTGTCATACTGTTCTGCTCTTTTGTACCTTAAGGTGCTGTCTTTTGGTCTTTTATTCTATTTAGATGATTATTGTTTATATTTTTGTTTTATTTGTTTCCTATCTCTTTCCCCCATTGGAACCTAATTTTATTACCCTTTCATTTTGTTGAATATTTACTTACAGTTACATCAACTTCTTTTCTAGACACTAACACAGTTGAGATACTAAATCCTATGAACTTGTAAAGGAGCCTCATTAAGTTTACCCTTGGTGTTTATTTCTCCTAAATTCTTAGCTAGGCAAACTATCTTTTAGCAAGTCTACTTCTTATCTTAATAACCTCCATGCTTCATCTCAGTGTTTCTTTATCACCGTTGATTTATATAGAGAGGGATACAAGACGAGAGAATTATGGTTCTCAATCTACTGAGGATTTTGCTTTTCTGATATTTGATTGCGAATTTTTTAGATCCTGATATCAAAACTAATCTGTTTAGGGTTATCATGCTTTACAAACACATCGAGTTGCACATACGCTATGGAATCAAGGGCGCAAAGTCTTGGCATTGGCGTTACAAAGTCGAGTTAGTGAGGTAATCTGATATCCTCTACTTGGTGATAGCCATCATTGTCATTTTCAATAGTACTGACCTATTGCTCTATGTTACTTCATTGTGATTTTGTCACTTCAATACAGGTTTTTGGAGTTGATATACATCCAGGTAATCATTCAGTTTCTCCACCCCACTATCTGCACCAAAAGATATGGTTTCTGTTTTATTCCTGCCAATTAAATTCTCACAAGTTACTTTTGTAAAAACTACCAGTCAATTATCTTATTAGTGGATCTGCATCGATAACTATGACTAAGTTATACCTGTGTTTGCCTATAAAACAGCTGCCCAAATTGGAGAGGGAATTCTTCTGGATCATGCCACTGGTGTTGTAATTGGTGAAACTGCTGTCATAGGGAATAGAGTTTCACTTATGCAGGTGAGTTATGCCGATTCCTATACGTTGCGTGTTGGTGTGTCATTTAATACCTATCTTCTGCACTGTAGATTTCTGATTGAGTGGAGGATAAGATAATTACACTTTTTCCTTATTTTTTATTTCACTTTGCCTTCAGATTAAAAGATCGAACAGAAATTTGAGTGTCATGGTAAAATACAAGTATCTATATGCCTGACAACATTTATTAGAGTTTTCGAGCATACAATGTTAACAAATTGTTGATCAAAATAACTAATAACTGATAGAAAATTCTGTTATTGTAAAGGCTGGTACAGATGTTCTCCTTTGGAGCCTGACAGCAGTGGTTTCCCTAGCCCTCTAAGTGATTGACTGAATCCGGTAGATGTTTAGGAGTACCTTTCAATGAGTGGAGTGTGTTTTATGTTTACCCTATAATTTTAAATTTGCAACTAGAAAATTGGTTTGTCATCTATCCCTTTTCAATCGTTTATCCTTCAACTTCTTGAAAAAATTGAAAAACCCTTTAAAAAATACTCTAGAGCCCCCTACCCTCTCCTCCCAACAACCAATCCTAAAACTCTTTTTAGCAAAACTTTCCTCAACTTCAGTTCCTACATAAGTCAACCCCCCTTCCAGAGCTCTGCCAGTTCATGAGGTGTGGATTGTTTTGCTTGAATTTGTTGTGGCAGGTAGGGTATACCATCTAATCTATGTTGCATGTGATGCAGAGAGTATAGATAGTACAAGAATCAGTTCATTCTTCCACCATAACATAAACGTATTTGTGGACATGAGGGTAATCCTGTCAAAAGATTCTTCACATGAGGTGCAATAGTATAGTTTTTGTGTAGTGATTTCTAGTGATGTCTTGAGGTGGCAACTAGTGGGAATCCTTCTATGTGAACGGAAACGGATTCCTTAAGCATCTGTTACCTAAATAATTCATTCCATCACCTTGAATATCATCAATCTGTACTATATAAGCTGGGAAACTTGTACTATATAAGCTGGGAAACTTGAATCTCATGGGGAAGTTCATACGTCCTCTATCCCGAAGATCGTCTAAATCGCCGTTTTGGTCACTCACAAAGTTGTGTCCGTTTTTCTAAAACGGAAGTAAATAAACTTCGCACAACAAAATGTTTGGTGTTTGTTACACTCGTCAGTATTCTTCCATCTTCTTCTTCTTCTATAACACTATACTCAAAATACAGCTCACATGTCCTTGCAACAAAATACTAAACAAATATTTTTAAAGGCTTGTCCTAATAAGTGCACAAAGTGAAAGCTGGATAAATTGGGAGGGATTAGTTGCATTTTATTTGCCTCGACCAATTTATGGGAGAGTTCTTATACTTGTCATTGGACAAACTTAAACTTTTGAACCCTGTATCGTGTCATGAAATCCATTTAGTGTCTCCCAGGTACTGAGCACGTAATGAGTAGACAGTCTGCCACTGTGAATCTGTGCTCTGACCAGCTTAAACTTTCAATTTCCAGATCCTATTATGAAGCTCATTTATTGCCTCCCAGCTGCTGAGTGGGTTATGAGTAGACTGCAGACACCCAGGCTCTTCCTCTTGTATTTGTATTTAACACAATATAACTGATTATTTTATCCTCCACATCATGTCTGTAGATTCATTATGTGGAGATGTTTGTCAGTATAAATTCTGTTTAGTACTCCTTTTTTCACCTGAATATATTTTGCACAGGGCGTAACCTTGGGAGGTACTGGGAAAGAGATTGGTGATAGGCATCCCAAAATAGGTCAAGGTGCACTGATTGGAGCTAGTGCAACTATACTTGGAAATATAGAAATAGGGGAAGGTGCAATGGTTGGTGCTGGTTCCCTTGTGATGAAGGATGTTCCTCCCCACAGGTTGAGTATTATATATTTA</genome_strand>
        <mrna_strand>TTCTTTCCAACCGTCTGCAAAATCCTACACTTTTGGCAACTGAATTAATGGACATATTCTCTGATGTAATAATGCACAATCGGTGCATCCAATGCTCTATTCGACTTGATTTACAG............................................................................................GCATGTAAAGATAGAGATCCTTCATGTTTGTCATACTGTTCTGCTCTTTTGTACCTTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTATCATGCTTTACAAACACATCGAGTTGCACATACGCTATGGAATCAAGGGCGCAAAGTCTTGGCATTGGCGTTACAAAGTCGAGTTAGTGAG........................................................................................................GTTTTTGGAGTTGATATACATCCAG................................................................................................................................................................................CTGCCCAAATTGGAGAGGGAATTCTTCTGGATCATGCCACTGGTGTTGTAATTGGTGAAACTGCTGTCATAGGGAATAGAGTTTCACTTATGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGTAACCTTGGGAGGTACTGGGAAAGAGATTGGTGATAGGCATCCCAAAATAGGTCAAGGTGCACTGATTGGAGCTAGTGCAACTATACTTGGAAATATAGAAATAGGGGAAGGTGCAATGGTTGGTGCTGGTTCCCTTGTGATGAAGGATGTTCCTCCCCACAGGTTGAGTATTATATATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E401406" ref_strand="+" ref_description="SGN-E401406 [PPC-4-G13]">
      <seq>ccgacccgaacttgatcgtctctgtcgctaacaccgcttctactcttggtgaccctatttgggatgctgttaagcttgaagctaagcttgaggcagagaaggagccaatattaagcagcttcttgtacgcgagtattttgactcatgattgtttggaacgggcattgagctttgttctttccaaccgtctgcaaaatcctacacttttggcaactcaattaatggacatattttctgatgtaataatgcacaatcggtgcattcaatgctccattcgacttgatttacaggcatgtaaagatagagatccttcatgtttgtcatactgttctgctcttttgtaccttaagggttatcatgctttacaaacacatcgagttgcacatacgctatggaatcaagggcgcaaagtcttggcattggcgttacaaagtcgagttagtgaggtttttggagttgatatacatccagctgcccaaattggagagggaattctgctggatcatgccactggtgttgtaattggtgaaactgctgtcatagggaatagagtttcacttatgcagggtgtaaccttgggaggaactgggaaagagattggtgataggcatcctaaaataggtcaaggtgcactgattggagctagtgcaactatacttggaatataaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="-" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="43471" stop="38842"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43171" g_stop="43080" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43079" i_stop="42237" i_length="843">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.968" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42236" g_stop="42039" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="290" r_length="198" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42038" i_stop="41947" i_length="92">
            <donor d_prob="0.716" d_score="0.96"/>
            <acceptor a_prob="0.765" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41946" g_stop="41887" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="350" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41886" i_stop="41441" i_length="446">
            <donor d_prob="0.518" d_score="1.00"/>
            <acceptor a_prob="0.714" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41440" g_stop="41345" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="446" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41344" i_stop="41241" i_length="104">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41240" g_stop="41216" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="471" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41215" i_stop="41040" i_length="176">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.947" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41039" g_stop="40945" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="566" r_length="95" r_score="0.989"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="40944" i_stop="39248" i_length="1697">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="39247" g_stop="39143" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="670" r_length="104" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="-" ref_id="SGN-E401406" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E401406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43171" e_stop="43080"/>
          <exon e_start="42236" e_stop="42039"/>
          <exon e_start="41946" e_stop="41887"/>
          <exon e_start="41440" e_stop="41345"/>
          <exon e_start="41240" e_stop="41216"/>
          <exon e_start="41039" e_stop="40945"/>
          <exon e_start="39247" e_stop="39143"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGACCCGAACTTGATCGTCTCTGTCGCTAACACCGCTTCTACTCTTGGTGACCCTATTTGGGATGCTGTAAAGCTTGAAGCAAAGCTTGAGGTCTGTTTTTTTCATTCTACTTTTTTACTTCTTCTCTTTTTAACTACCACTGTGTATTTGATGTTTTCACAAGAATCAAACACATGTGCAAAGTTTACACAGATAAAAAAAAAGAAATCACGAGTTTGTTGGGATTTGAGCCTGCTTTACACATAGTTTGACCTCAACACAACTGTTTCATTTAAGTTAACAGTTTTTTTTTTTTTTGGTAGAAGTTGTTCTTGGGATTTGATTTATATCAATGGTACAATTGCTAAGAATTTAATATTTTAATCATTTATCCATCCTCGTTTCCAAGTTATTACCTATTCACATGTGCTATAGATAGTTTACTTTTAAATTATGTTGTTCGATCCTTTAAAAATTTCTAACACACATCCGATGCTATTTTAAGAGTTTGAGCAACGTAACTTTTTAAGTCGCATGATAGATTAATTTTCAACACTGATGGTGGTGGATATCAATACTCTATTGTTGGTCTTGGATCAGATGGATGTTTTCGTATGTCCGGTGTTTGTAAGCTTTCATAGTGGAGTTGATGTAACAAATTCGATAGTTTGATAGTGGAGTTAATGTAACAATTTGATGGTGGAGTTAATATAAGAAATTTGATAGTGTAGTTAATGTAACAAATTTGATAGTTTGATGGTGGAGTTAATGTAACAATCGTTTTCAGCTTTTCCATCATCAAGAGAACATGTATAATAAAGATCTGAAATCTACTATGTAAATATAGGTAAGCTGGATTTTTCTCGATTTGTGAGTTTTGTATGGATTTTGAGAATGTGTTTTCGCTGATAGTTTTGTGGAACCATTTAATTTTGTTTCTATTATGCGATTCAGGCAGAGAAGGAGCCAATATTAAGCAGCTTCTTGTACGCAAGTATTTTGACTCATGATTGTTTGGAACGGGCATTGAGCTTTGTTCTTTCCAACCGTCTGCAAAATCCTACACTTTTGGCAACTCAATTAATGGACATATTCTCTGATGTAATAATGCACAATCGGTGCATCCAATGCTCTATTCGACTTGATTTACAGGTGCCCTCGGGATTCCATGAATCTCAAATACATTCTCTCTTTATACTTTTTGGCAAGTATTAACAATTCCTTTTGTCCCTCCTCCTTGTCAGGCATGTAAAGATAGAGATCCTTCATGTTTGTCATACTGTTCTGCTCTTTTGTACCTTAAGGTGCTGTCTTTTGGTCTTTTATTCTATTTAGATGATTATTGTTTATATTTTTGTTTTATTTGTTTCCTATCTCTTTCCCCCATTGGAACCTAATTTTATTACCCTTTCATTTTGTTGAATATTTACTTACAGTTACATCAACTTCTTTTCTAGACACTAACACAGTTGAGATACTAAATCCTATGAACTTGTAAAGGAGCCTCATTAAGTTTACCCTTGGTGTTTATTTCTCCTAAATTCTTAGCTAGGCAAACTATCTTTTAGCAAGTCTACTTCTTATCTTAATAACCTCCATGCTTCATCTCAGTGTTTCTTTATCACCGTTGATTTATATAGAGAGGGATACAAGACGAGAGAATTATGGTTCTCAATCTACTGAGGATTTTGCTTTTCTGATATTTGATTGCGAATTTTTTAGATCCTGATATCAAAACTAATCTGTTTAGGGTTATCATGCTTTACAAACACATCGAGTTGCACATACGCTATGGAATCAAGGGCGCAAAGTCTTGGCATTGGCGTTACAAAGTCGAGTTAGTGAGGTAATCTGATATCCTCTACTTGGTGATAGCCATCATTGTCATTTTCAATAGTACTGACCTATTGCTCTATGTTACTTCATTGTGATTTTGTCACTTCAATACAGGTTTTTGGAGTTGATATACATCCAGGTAATCATTCAGTTTCTCCACCCCACTATCTGCACCAAAAGATATGGTTTCTGTTTTATTCCTGCCAATTAAATTCTCACAAGTTACTTTTGTAAAAACTACCAGTCAATTATCTTATTAGTGGATCTGCATCGATAACTATGACTAAGTTATACCTGTGTTTGCCTATAAAACAGCTGCCCAAATTGGAGAGGGAATTCTTCTGGATCATGCCACTGGTGTTGTAATTGGTGAAACTGCTGTCATAGGGAATAGAGTTTCACTTATGCAGGTGAGTTATGCCGATTCCTATACGTTGCGTGTTGGTGTGTCATTTAATACCTATCTTCTGCACTGTAGATTTCTGATTGAGTGGAGGATAAGATAATTACACTTTTTCCTTATTTTTTATTTCACTTTGCCTTCAGATTAAAAGATCGAACAGAAATTTGAGTGTCATGGTAAAATACAAGTATCTATATGCCTGACAACATTTATTAGAGTTTTCGAGCATACAATGTTAACAAATTGTTGATCAAAATAACTAATAACTGATAGAAAATTCTGTTATTGTAAAGGCTGGTACAGATGTTCTCCTTTGGAGCCTGACAGCAGTGGTTTCCCTAGCCCTCTAAGTGATTGACTGAATCCGGTAGATGTTTAGGAGTACCTTTCAATGAGTGGAGTGTGTTTTATGTTTACCCTATAATTTTAAATTTGCAACTAGAAAATTGGTTTGTCATCTATCCCTTTTCAATCGTTTATCCTTCAACTTCTTGAAAAAATTGAAAAACCCTTTAAAAAATACTCTAGAGCCCCCTACCCTCTCCTCCCAACAACCAATCCTAAAACTCTTTTTAGCAAAACTTTCCTCAACTTCAGTTCCTACATAAGTCAACCCCCCTTCCAGAGCTCTGCCAGTTCATGAGGTGTGGATTGTTTTGCTTGAATTTGTTGTGGCAGGTAGGGTATACCATCTAATCTATGTTGCATGTGATGCAGAGAGTATAGATAGTACAAGAATCAGTTCATTCTTCCACCATAACATAAACGTATTTGTGGACATGAGGGTAATCCTGTCAAAAGATTCTTCACATGAGGTGCAATAGTATAGTTTTTGTGTAGTGATTTCTAGTGATGTCTTGAGGTGGCAACTAGTGGGAATCCTTCTATGTGAACGGAAACGGATTCCTTAAGCATCTGTTACCTAAATAATTCATTCCATCACCTTGAATATCATCAATCTGTACTATATAAGCTGGGAAACTTGTACTATATAAGCTGGGAAACTTGAATCTCATGGGGAAGTTCATACGTCCTCTATCCCGAAGATCGTCTAAATCGCCGTTTTGGTCACTCACAAAGTTGTGTCCGTTTTTCTAAAACGGAAGTAAATAAACTTCGCACAACAAAATGTTTGGTGTTTGTTACACTCGTCAGTATTCTTCCATCTTCTTCTTCTTCTATAACACTATACTCAAAATACAGCTCACATGTCCTTGCAACAAAATACTAAACAAATATTTTTAAAGGCTTGTCCTAATAAGTGCACAAAGTGAAAGCTGGATAAATTGGGAGGGATTAGTTGCATTTTATTTGCCTCGACCAATTTATGGGAGAGTTCTTATACTTGTCATTGGACAAACTTAAACTTTTGAACCCTGTATCGTGTCATGAAATCCATTTAGTGTCTCCCAGGTACTGAGCACGTAATGAGTAGACAGTCTGCCACTGTGAATCTGTGCTCTGACCAGCTTAAACTTTCAATTTCCAGATCCTATTATGAAGCTCATTTATTGCCTCCCAGCTGCTGAGTGGGTTATGAGTAGACTGCAGACACCCAGGCTCTTCCTCTTGTATTTGTATTTAACACAATATAACTGATTATTTTATCCTCCACATCATGTCTGTAGATTCATTATGTGGAGATGTTTGTCAGTATAAATTCTGTTTAGTACTCCTTTTTTCACCTGAATATATTTTGCACAGGGCGTAACCTTGGGAGGTACTGGGAAAGAGATTGGTGATAGGCATCCCAAAATAGGTCAAGGTGCACTGATTGGAGCTAGTGCAACTATACTTGGAAATATAGAA</genome_strand>
        <mrna_strand>CCGACCCGAACTTGATCGTCTCTGTCGCTAACACCGCTTCTACTCTTGGTGACCCTATTTGGGATGCTGTTAAGCTTGAAGCTAAGCTTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAGAAGGAGCCAATATTAAGCAGCTTCTTGTACGCGAGTATTTTGACTCATGATTGTTTGGAACGGGCATTGAGCTTTGTTCTTTCCAACCGTCTGCAAAATCCTACACTTTTGGCAACTCAATTAATGGACATATTTTCTGATGTAATAATGCACAATCGGTGCATTCAATGCTCCATTCGACTTGATTTACAG............................................................................................GCATGTAAAGATAGAGATCCTTCATGTTTGTCATACTGTTCTGCTCTTTTGTACCTTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTATCATGCTTTACAAACACATCGAGTTGCACATACGCTATGGAATCAAGGGCGCAAAGTCTTGGCATTGGCGTTACAAAGTCGAGTTAGTGAG........................................................................................................GTTTTTGGAGTTGATATACATCCAG................................................................................................................................................................................CTGCCCAAATTGGAGAGGGAATTCTGCTGGATCATGCCACTGGTGTTGTAATTGGTGAAACTGCTGTCATAGGGAATAGAGTTTCACTTATGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTAACCTTGGGAGGAACTGGGAAAGAGATTGGTGATAGGCATCCTAAAATAGGTCAAGGTGCACTGATTGGAGCTAGTGCAACTATACTTGG-AATATAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E432333" ref_strand="+" ref_description="SGN-E432333 [STM-56-L12]">
      <seq>ccgacccgaacttgatcgtctctgtcgctaacaccgcttctactcttggtgaccctatttgggatgctgttaagcttgaagctaagcttgaggcagagaaggagccaatattaagcagcttcttgtacgcgagtattttgactcatgattgtttggaacgggcattgagctttgttctttccaaccgtctgcaaaatcctacacttttggcaactcaattaatggacatattttctgatgtaataatgcacaatcggtgcattcaatgctccattcgacttgatttacaggcatgtaaagatagagatccttcatgtttgtcatactgttctgctcttttgtaccttaagggttatcatgctttacaaacacatcgagttgcacatacgctatggaatcaagggcgcaaagtcttggcattggcgttacaaagtcgagttagtgaggtttttggagttgatatacatccagctgcccaaattggagagggaattctgctggatcatgccactggtgttgtaattggtgaaactgctgtcatagggaatagagtttcacttatgcagggtgtaaccttgggaggaactgggaaagagattggtgataggcatcctaaaataggtcaaggtgcactgattggagctagtgcaactatacttggaaatataaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="-" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="43471" stop="38842"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43171" g_stop="43080" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43079" i_stop="42237" i_length="843">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.968" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42236" g_stop="42039" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="290" r_length="198" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42038" i_stop="41947" i_length="92">
            <donor d_prob="0.716" d_score="0.96"/>
            <acceptor a_prob="0.765" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41946" g_stop="41887" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="350" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41886" i_stop="41441" i_length="446">
            <donor d_prob="0.518" d_score="1.00"/>
            <acceptor a_prob="0.714" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41440" g_stop="41345" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="446" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41344" i_stop="41241" i_length="104">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41240" g_stop="41216" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="471" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41215" i_stop="41040" i_length="176">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.947" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41039" g_stop="40945" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="566" r_length="95" r_score="0.989"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="40944" i_stop="39248" i_length="1697">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="39247" g_stop="39143" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="671" r_length="105" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="-" ref_id="SGN-E432333" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E432333" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43171" e_stop="43080"/>
          <exon e_start="42236" e_stop="42039"/>
          <exon e_start="41946" e_stop="41887"/>
          <exon e_start="41440" e_stop="41345"/>
          <exon e_start="41240" e_stop="41216"/>
          <exon e_start="41039" e_stop="40945"/>
          <exon e_start="39247" e_stop="39143"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGACCCGAACTTGATCGTCTCTGTCGCTAACACCGCTTCTACTCTTGGTGACCCTATTTGGGATGCTGTAAAGCTTGAAGCAAAGCTTGAGGTCTGTTTTTTTCATTCTACTTTTTTACTTCTTCTCTTTTTAACTACCACTGTGTATTTGATGTTTTCACAAGAATCAAACACATGTGCAAAGTTTACACAGATAAAAAAAAAGAAATCACGAGTTTGTTGGGATTTGAGCCTGCTTTACACATAGTTTGACCTCAACACAACTGTTTCATTTAAGTTAACAGTTTTTTTTTTTTTTGGTAGAAGTTGTTCTTGGGATTTGATTTATATCAATGGTACAATTGCTAAGAATTTAATATTTTAATCATTTATCCATCCTCGTTTCCAAGTTATTACCTATTCACATGTGCTATAGATAGTTTACTTTTAAATTATGTTGTTCGATCCTTTAAAAATTTCTAACACACATCCGATGCTATTTTAAGAGTTTGAGCAACGTAACTTTTTAAGTCGCATGATAGATTAATTTTCAACACTGATGGTGGTGGATATCAATACTCTATTGTTGGTCTTGGATCAGATGGATGTTTTCGTATGTCCGGTGTTTGTAAGCTTTCATAGTGGAGTTGATGTAACAAATTCGATAGTTTGATAGTGGAGTTAATGTAACAATTTGATGGTGGAGTTAATATAAGAAATTTGATAGTGTAGTTAATGTAACAAATTTGATAGTTTGATGGTGGAGTTAATGTAACAATCGTTTTCAGCTTTTCCATCATCAAGAGAACATGTATAATAAAGATCTGAAATCTACTATGTAAATATAGGTAAGCTGGATTTTTCTCGATTTGTGAGTTTTGTATGGATTTTGAGAATGTGTTTTCGCTGATAGTTTTGTGGAACCATTTAATTTTGTTTCTATTATGCGATTCAGGCAGAGAAGGAGCCAATATTAAGCAGCTTCTTGTACGCAAGTATTTTGACTCATGATTGTTTGGAACGGGCATTGAGCTTTGTTCTTTCCAACCGTCTGCAAAATCCTACACTTTTGGCAACTCAATTAATGGACATATTCTCTGATGTAATAATGCACAATCGGTGCATCCAATGCTCTATTCGACTTGATTTACAGGTGCCCTCGGGATTCCATGAATCTCAAATACATTCTCTCTTTATACTTTTTGGCAAGTATTAACAATTCCTTTTGTCCCTCCTCCTTGTCAGGCATGTAAAGATAGAGATCCTTCATGTTTGTCATACTGTTCTGCTCTTTTGTACCTTAAGGTGCTGTCTTTTGGTCTTTTATTCTATTTAGATGATTATTGTTTATATTTTTGTTTTATTTGTTTCCTATCTCTTTCCCCCATTGGAACCTAATTTTATTACCCTTTCATTTTGTTGAATATTTACTTACAGTTACATCAACTTCTTTTCTAGACACTAACACAGTTGAGATACTAAATCCTATGAACTTGTAAAGGAGCCTCATTAAGTTTACCCTTGGTGTTTATTTCTCCTAAATTCTTAGCTAGGCAAACTATCTTTTAGCAAGTCTACTTCTTATCTTAATAACCTCCATGCTTCATCTCAGTGTTTCTTTATCACCGTTGATTTATATAGAGAGGGATACAAGACGAGAGAATTATGGTTCTCAATCTACTGAGGATTTTGCTTTTCTGATATTTGATTGCGAATTTTTTAGATCCTGATATCAAAACTAATCTGTTTAGGGTTATCATGCTTTACAAACACATCGAGTTGCACATACGCTATGGAATCAAGGGCGCAAAGTCTTGGCATTGGCGTTACAAAGTCGAGTTAGTGAGGTAATCTGATATCCTCTACTTGGTGATAGCCATCATTGTCATTTTCAATAGTACTGACCTATTGCTCTATGTTACTTCATTGTGATTTTGTCACTTCAATACAGGTTTTTGGAGTTGATATACATCCAGGTAATCATTCAGTTTCTCCACCCCACTATCTGCACCAAAAGATATGGTTTCTGTTTTATTCCTGCCAATTAAATTCTCACAAGTTACTTTTGTAAAAACTACCAGTCAATTATCTTATTAGTGGATCTGCATCGATAACTATGACTAAGTTATACCTGTGTTTGCCTATAAAACAGCTGCCCAAATTGGAGAGGGAATTCTTCTGGATCATGCCACTGGTGTTGTAATTGGTGAAACTGCTGTCATAGGGAATAGAGTTTCACTTATGCAGGTGAGTTATGCCGATTCCTATACGTTGCGTGTTGGTGTGTCATTTAATACCTATCTTCTGCACTGTAGATTTCTGATTGAGTGGAGGATAAGATAATTACACTTTTTCCTTATTTTTTATTTCACTTTGCCTTCAGATTAAAAGATCGAACAGAAATTTGAGTGTCATGGTAAAATACAAGTATCTATATGCCTGACAACATTTATTAGAGTTTTCGAGCATACAATGTTAACAAATTGTTGATCAAAATAACTAATAACTGATAGAAAATTCTGTTATTGTAAAGGCTGGTACAGATGTTCTCCTTTGGAGCCTGACAGCAGTGGTTTCCCTAGCCCTCTAAGTGATTGACTGAATCCGGTAGATGTTTAGGAGTACCTTTCAATGAGTGGAGTGTGTTTTATGTTTACCCTATAATTTTAAATTTGCAACTAGAAAATTGGTTTGTCATCTATCCCTTTTCAATCGTTTATCCTTCAACTTCTTGAAAAAATTGAAAAACCCTTTAAAAAATACTCTAGAGCCCCCTACCCTCTCCTCCCAACAACCAATCCTAAAACTCTTTTTAGCAAAACTTTCCTCAACTTCAGTTCCTACATAAGTCAACCCCCCTTCCAGAGCTCTGCCAGTTCATGAGGTGTGGATTGTTTTGCTTGAATTTGTTGTGGCAGGTAGGGTATACCATCTAATCTATGTTGCATGTGATGCAGAGAGTATAGATAGTACAAGAATCAGTTCATTCTTCCACCATAACATAAACGTATTTGTGGACATGAGGGTAATCCTGTCAAAAGATTCTTCACATGAGGTGCAATAGTATAGTTTTTGTGTAGTGATTTCTAGTGATGTCTTGAGGTGGCAACTAGTGGGAATCCTTCTATGTGAACGGAAACGGATTCCTTAAGCATCTGTTACCTAAATAATTCATTCCATCACCTTGAATATCATCAATCTGTACTATATAAGCTGGGAAACTTGTACTATATAAGCTGGGAAACTTGAATCTCATGGGGAAGTTCATACGTCCTCTATCCCGAAGATCGTCTAAATCGCCGTTTTGGTCACTCACAAAGTTGTGTCCGTTTTTCTAAAACGGAAGTAAATAAACTTCGCACAACAAAATGTTTGGTGTTTGTTACACTCGTCAGTATTCTTCCATCTTCTTCTTCTTCTATAACACTATACTCAAAATACAGCTCACATGTCCTTGCAACAAAATACTAAACAAATATTTTTAAAGGCTTGTCCTAATAAGTGCACAAAGTGAAAGCTGGATAAATTGGGAGGGATTAGTTGCATTTTATTTGCCTCGACCAATTTATGGGAGAGTTCTTATACTTGTCATTGGACAAACTTAAACTTTTGAACCCTGTATCGTGTCATGAAATCCATTTAGTGTCTCCCAGGTACTGAGCACGTAATGAGTAGACAGTCTGCCACTGTGAATCTGTGCTCTGACCAGCTTAAACTTTCAATTTCCAGATCCTATTATGAAGCTCATTTATTGCCTCCCAGCTGCTGAGTGGGTTATGAGTAGACTGCAGACACCCAGGCTCTTCCTCTTGTATTTGTATTTAACACAATATAACTGATTATTTTATCCTCCACATCATGTCTGTAGATTCATTATGTGGAGATGTTTGTCAGTATAAATTCTGTTTAGTACTCCTTTTTTCACCTGAATATATTTTGCACAGGGCGTAACCTTGGGAGGTACTGGGAAAGAGATTGGTGATAGGCATCCCAAAATAGGTCAAGGTGCACTGATTGGAGCTAGTGCAACTATACTTGGAAATATAGAA</genome_strand>
        <mrna_strand>CCGACCCGAACTTGATCGTCTCTGTCGCTAACACCGCTTCTACTCTTGGTGACCCTATTTGGGATGCTGTTAAGCTTGAAGCTAAGCTTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAGAAGGAGCCAATATTAAGCAGCTTCTTGTACGCGAGTATTTTGACTCATGATTGTTTGGAACGGGCATTGAGCTTTGTTCTTTCCAACCGTCTGCAAAATCCTACACTTTTGGCAACTCAATTAATGGACATATTTTCTGATGTAATAATGCACAATCGGTGCATTCAATGCTCCATTCGACTTGATTTACAG............................................................................................GCATGTAAAGATAGAGATCCTTCATGTTTGTCATACTGTTCTGCTCTTTTGTACCTTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTATCATGCTTTACAAACACATCGAGTTGCACATACGCTATGGAATCAAGGGCGCAAAGTCTTGGCATTGGCGTTACAAAGTCGAGTTAGTGAG........................................................................................................GTTTTTGGAGTTGATATACATCCAG................................................................................................................................................................................CTGCCCAAATTGGAGAGGGAATTCTGCTGGATCATGCCACTGGTGTTGTAATTGGTGAAACTGCTGTCATAGGGAATAGAGTTTCACTTATGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTAACCTTGGGAGGAACTGGGAAAGAGATTGGTGATAGGCATCCTAAAATAGGTCAAGGTGCACTGATTGGAGCTAGTGCAACTATACTTGGAAATATAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E334038" ref_strand="+" ref_description="SGN-E334038 [cTOD-24-K10]">
      <seq>cttgaagcaaagcttgaggcagagaaggagccaatattaagcagcttcttgtacgcaagtattttgactcatgattgtttggaacgggcattgagctttgttctttccaaccgtctgcaaaatcctacacttttggcaactcaattaatggacatattctctgatgtaataatgcacaatcggtgcatccaatgctctattcgacttgatttacaggcatgtaaagatagagatccttcatgtttgtcatactgttctgctcttttgtaccttaagggttatcatgctttacaaacacatcgagttgcacatacgctatggaatcaagggcgcaaagtcttggcattggcgttacaaagtcgagttagtgaggtttttggagttgatatacatccagctgcccaaattggagagggaattcttctggatcatgccactggtgttgtaattggtgaaactgctgtcatagggaatagagtttcacttatgcagggcgtaaccttgggaggtactgggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="-" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="43397" stop="38922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43097" g_stop="43080" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43079" i_stop="42237" i_length="843">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42236" g_stop="42039" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="216" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42038" i_stop="41947" i_length="92">
            <donor d_prob="0.716" d_score="1.00"/>
            <acceptor a_prob="0.765" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41946" g_stop="41887" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="276" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41886" i_stop="41441" i_length="446">
            <donor d_prob="0.518" d_score="1.00"/>
            <acceptor a_prob="0.714" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41440" g_stop="41345" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="372" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41344" i_stop="41241" i_length="104">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41240" g_stop="41216" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="397" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41215" i_stop="41040" i_length="176">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41039" g_stop="40945" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="492" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="40944" i_stop="39248" i_length="1697">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="39247" g_stop="39222" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="518" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="-" ref_id="SGN-E334038" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43097" e_stop="43080"/>
          <exon e_start="42236" e_stop="42039"/>
          <exon e_start="41946" e_stop="41887"/>
          <exon e_start="41440" e_stop="41345"/>
          <exon e_start="41240" e_stop="41216"/>
          <exon e_start="41039" e_stop="40945"/>
          <exon e_start="39247" e_stop="39222"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGAAGCAAAGCTTGAGGTCTGTTTTTTTCATTCTACTTTTTTACTTCTTCTCTTTTTAACTACCACTGTGTATTTGATGTTTTCACAAGAATCAAACACATGTGCAAAGTTTACACAGATAAAAAAAAAGAAATCACGAGTTTGTTGGGATTTGAGCCTGCTTTACACATAGTTTGACCTCAACACAACTGTTTCATTTAAGTTAACAGTTTTTTTTTTTTTTGGTAGAAGTTGTTCTTGGGATTTGATTTATATCAATGGTACAATTGCTAAGAATTTAATATTTTAATCATTTATCCATCCTCGTTTCCAAGTTATTACCTATTCACATGTGCTATAGATAGTTTACTTTTAAATTATGTTGTTCGATCCTTTAAAAATTTCTAACACACATCCGATGCTATTTTAAGAGTTTGAGCAACGTAACTTTTTAAGTCGCATGATAGATTAATTTTCAACACTGATGGTGGTGGATATCAATACTCTATTGTTGGTCTTGGATCAGATGGATGTTTTCGTATGTCCGGTGTTTGTAAGCTTTCATAGTGGAGTTGATGTAACAAATTCGATAGTTTGATAGTGGAGTTAATGTAACAATTTGATGGTGGAGTTAATATAAGAAATTTGATAGTGTAGTTAATGTAACAAATTTGATAGTTTGATGGTGGAGTTAATGTAACAATCGTTTTCAGCTTTTCCATCATCAAGAGAACATGTATAATAAAGATCTGAAATCTACTATGTAAATATAGGTAAGCTGGATTTTTCTCGATTTGTGAGTTTTGTATGGATTTTGAGAATGTGTTTTCGCTGATAGTTTTGTGGAACCATTTAATTTTGTTTCTATTATGCGATTCAGGCAGAGAAGGAGCCAATATTAAGCAGCTTCTTGTACGCAAGTATTTTGACTCATGATTGTTTGGAACGGGCATTGAGCTTTGTTCTTTCCAACCGTCTGCAAAATCCTACACTTTTGGCAACTCAATTAATGGACATATTCTCTGATGTAATAATGCACAATCGGTGCATCCAATGCTCTATTCGACTTGATTTACAGGTGCCCTCGGGATTCCATGAATCTCAAATACATTCTCTCTTTATACTTTTTGGCAAGTATTAACAATTCCTTTTGTCCCTCCTCCTTGTCAGGCATGTAAAGATAGAGATCCTTCATGTTTGTCATACTGTTCTGCTCTTTTGTACCTTAAGGTGCTGTCTTTTGGTCTTTTATTCTATTTAGATGATTATTGTTTATATTTTTGTTTTATTTGTTTCCTATCTCTTTCCCCCATTGGAACCTAATTTTATTACCCTTTCATTTTGTTGAATATTTACTTACAGTTACATCAACTTCTTTTCTAGACACTAACACAGTTGAGATACTAAATCCTATGAACTTGTAAAGGAGCCTCATTAAGTTTACCCTTGGTGTTTATTTCTCCTAAATTCTTAGCTAGGCAAACTATCTTTTAGCAAGTCTACTTCTTATCTTAATAACCTCCATGCTTCATCTCAGTGTTTCTTTATCACCGTTGATTTATATAGAGAGGGATACAAGACGAGAGAATTATGGTTCTCAATCTACTGAGGATTTTGCTTTTCTGATATTTGATTGCGAATTTTTTAGATCCTGATATCAAAACTAATCTGTTTAGGGTTATCATGCTTTACAAACACATCGAGTTGCACATACGCTATGGAATCAAGGGCGCAAAGTCTTGGCATTGGCGTTACAAAGTCGAGTTAGTGAGGTAATCTGATATCCTCTACTTGGTGATAGCCATCATTGTCATTTTCAATAGTACTGACCTATTGCTCTATGTTACTTCATTGTGATTTTGTCACTTCAATACAGGTTTTTGGAGTTGATATACATCCAGGTAATCATTCAGTTTCTCCACCCCACTATCTGCACCAAAAGATATGGTTTCTGTTTTATTCCTGCCAATTAAATTCTCACAAGTTACTTTTGTAAAAACTACCAGTCAATTATCTTATTAGTGGATCTGCATCGATAACTATGACTAAGTTATACCTGTGTTTGCCTATAAAACAGCTGCCCAAATTGGAGAGGGAATTCTTCTGGATCATGCCACTGGTGTTGTAATTGGTGAAACTGCTGTCATAGGGAATAGAGTTTCACTTATGCAGGTGAGTTATGCCGATTCCTATACGTTGCGTGTTGGTGTGTCATTTAATACCTATCTTCTGCACTGTAGATTTCTGATTGAGTGGAGGATAAGATAATTACACTTTTTCCTTATTTTTTATTTCACTTTGCCTTCAGATTAAAAGATCGAACAGAAATTTGAGTGTCATGGTAAAATACAAGTATCTATATGCCTGACAACATTTATTAGAGTTTTCGAGCATACAATGTTAACAAATTGTTGATCAAAATAACTAATAACTGATAGAAAATTCTGTTATTGTAAAGGCTGGTACAGATGTTCTCCTTTGGAGCCTGACAGCAGTGGTTTCCCTAGCCCTCTAAGTGATTGACTGAATCCGGTAGATGTTTAGGAGTACCTTTCAATGAGTGGAGTGTGTTTTATGTTTACCCTATAATTTTAAATTTGCAACTAGAAAATTGGTTTGTCATCTATCCCTTTTCAATCGTTTATCCTTCAACTTCTTGAAAAAATTGAAAAACCCTTTAAAAAATACTCTAGAGCCCCCTACCCTCTCCTCCCAACAACCAATCCTAAAACTCTTTTTAGCAAAACTTTCCTCAACTTCAGTTCCTACATAAGTCAACCCCCCTTCCAGAGCTCTGCCAGTTCATGAGGTGTGGATTGTTTTGCTTGAATTTGTTGTGGCAGGTAGGGTATACCATCTAATCTATGTTGCATGTGATGCAGAGAGTATAGATAGTACAAGAATCAGTTCATTCTTCCACCATAACATAAACGTATTTGTGGACATGAGGGTAATCCTGTCAAAAGATTCTTCACATGAGGTGCAATAGTATAGTTTTTGTGTAGTGATTTCTAGTGATGTCTTGAGGTGGCAACTAGTGGGAATCCTTCTATGTGAACGGAAACGGATTCCTTAAGCATCTGTTACCTAAATAATTCATTCCATCACCTTGAATATCATCAATCTGTACTATATAAGCTGGGAAACTTGTACTATATAAGCTGGGAAACTTGAATCTCATGGGGAAGTTCATACGTCCTCTATCCCGAAGATCGTCTAAATCGCCGTTTTGGTCACTCACAAAGTTGTGTCCGTTTTTCTAAAACGGAAGTAAATAAACTTCGCACAACAAAATGTTTGGTGTTTGTTACACTCGTCAGTATTCTTCCATCTTCTTCTTCTTCTATAACACTATACTCAAAATACAGCTCACATGTCCTTGCAACAAAATACTAAACAAATATTTTTAAAGGCTTGTCCTAATAAGTGCACAAAGTGAAAGCTGGATAAATTGGGAGGGATTAGTTGCATTTTATTTGCCTCGACCAATTTATGGGAGAGTTCTTATACTTGTCATTGGACAAACTTAAACTTTTGAACCCTGTATCGTGTCATGAAATCCATTTAGTGTCTCCCAGGTACTGAGCACGTAATGAGTAGACAGTCTGCCACTGTGAATCTGTGCTCTGACCAGCTTAAACTTTCAATTTCCAGATCCTATTATGAAGCTCATTTATTGCCTCCCAGCTGCTGAGTGGGTTATGAGTAGACTGCAGACACCCAGGCTCTTCCTCTTGTATTTGTATTTAACACAATATAACTGATTATTTTATCCTCCACATCATGTCTGTAGATTCATTATGTGGAGATGTTTGTCAGTATAAATTCTGTTTAGTACTCCTTTTTTCACCTGAATATATTTTGCACAGGGCGTAACCTTGGGAGGTACTGGGAA</genome_strand>
        <mrna_strand>CTTGAAGCAAAGCTTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAGAAGGAGCCAATATTAAGCAGCTTCTTGTACGCAAGTATTTTGACTCATGATTGTTTGGAACGGGCATTGAGCTTTGTTCTTTCCAACCGTCTGCAAAATCCTACACTTTTGGCAACTCAATTAATGGACATATTCTCTGATGTAATAATGCACAATCGGTGCATCCAATGCTCTATTCGACTTGATTTACAG............................................................................................GCATGTAAAGATAGAGATCCTTCATGTTTGTCATACTGTTCTGCTCTTTTGTACCTTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTATCATGCTTTACAAACACATCGAGTTGCACATACGCTATGGAATCAAGGGCGCAAAGTCTTGGCATTGGCGTTACAAAGTCGAGTTAGTGAG........................................................................................................GTTTTTGGAGTTGATATACATCCAG................................................................................................................................................................................CTGCCCAAATTGGAGAGGGAATTCTTCTGGATCATGCCACTGGTGTTGTAATTGGTGAAACTGCTGTCATAGGGAATAGAGTTTCACTTATGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGTAACCTTGGGAGGTACTGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E303052" ref_strand="+" ref_description="SGN-E303052 [cLEW-26-D9]">
      <seq>ttctttccaaccgtctgcaaaatcctaccacttttggcaacctcaattaatggacatattctctgatgtaataatgccacaatcggtgcatccaatgctctattcgacttgatttacaggcatgtaaagatagagatccttcatgtttgtcatacctgttctgctcttttgtacccttaagggttatcatgcctttacaaacacatcgagttgcacatacccctatggaatcaagggcgcaaagtcttggcattggcgttacaaagtcgagttagtgaggtttttggagttgatatacatccagctgcccaaattggagagggaattcttctggatcatgccactggtgttgtaattggtgaaactgctgtcatagggaatagagtttcacttatgcaggtactgagcacgtaatgagtagacagtctgccactgtgaatctgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="-" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="42454" stop="39193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42154" g_stop="42039" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42038" i_stop="41947" i_length="92">
            <donor d_prob="0.716" d_score="0.96"/>
            <acceptor a_prob="0.765" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41946" g_stop="41887" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="181" r_length="62" r_score="0.933"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41886" i_stop="41441" i_length="446">
            <donor d_prob="0.518" d_score="0.92"/>
            <acceptor a_prob="0.714" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41440" g_stop="41345" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="279" r_length="98" r_score="0.948"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41344" i_stop="41241" i_length="104">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41240" g_stop="41216" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="304" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41215" i_stop="41040" i_length="176">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41039" g_stop="40945" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="399" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="40944" i_stop="39539" i_length="1406">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.869" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="39538" g_stop="39493" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="445" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="-" ref_id="SGN-E303052" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303052" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42154" e_stop="42039"/>
          <exon e_start="41946" e_stop="41887"/>
          <exon e_start="41440" e_stop="41345"/>
          <exon e_start="41240" e_stop="41216"/>
          <exon e_start="41039" e_stop="40945"/>
          <exon e_start="39538" e_stop="39493"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTCCAACCGTCTGCAAAATCCTA-CACTTTTGGCAA-CTCAATTAATGGACATATTCTCTGATGTAATAATG-CACAATCGGTGCATCCAATGCTCTATTCGACTTGATTTACAGGTGCCCTCGGGATTCCATGAATCTCAAATACATTCTCTCTTTATACTTTTTGGCAAGTATTAACAATTCCTTTTGTCCCTCCTCCTTGTCAGGCATGTAAAGATAGAGATCCTTCATGTTTGTCATA-CTGTTCTGCTCTTTTGTA-CCTTAAGGTGCTGTCTTTTGGTCTTTTATTCTATTTAGATGATTATTGTTTATATTTTTGTTTTATTTGTTTCCTATCTCTTTCCCCCATTGGAACCTAATTTTATTACCCTTTCATTTTGTTGAATATTTACTTACAGTTACATCAACTTCTTTTCTAGACACTAACACAGTTGAGATACTAAATCCTATGAACTTGTAAAGGAGCCTCATTAAGTTTACCCTTGGTGTTTATTTCTCCTAAATTCTTAGCTAGGCAAACTATCTTTTAGCAAGTCTACTTCTTATCTTAATAACCTCCATGCTTCATCTCAGTGTTTCTTTATCACCGTTGATTTATATAGAGAGGGATACAAGACGAGAGAATTATGGTTCTCAATCTACTGAGGATTTTGCTTTTCTGATATTTGATTGCGAATTTTTTAGATCCTGATATCAAAACTAATCTGTTTAGGGTTATCATG-CTTTACAAACACATCGAGTTGCACATA-CGCTATGGAATCAAGGGCGCAAAGTCTTGGCATTGGCGTTACAAAGTCGAGTTAGTGAGGTAATCTGATATCCTCTACTTGGTGATAGCCATCATTGTCATTTTCAATAGTACTGACCTATTGCTCTATGTTACTTCATTGTGATTTTGTCACTTCAATACAGGTTTTTGGAGTTGATATACATCCAGGTAATCATTCAGTTTCTCCACCCCACTATCTGCACCAAAAGATATGGTTTCTGTTTTATTCCTGCCAATTAAATTCTCACAAGTTACTTTTGTAAAAACTACCAGTCAATTATCTTATTAGTGGATCTGCATCGATAACTATGACTAAGTTATACCTGTGTTTGCCTATAAAACAGCTGCCCAAATTGGAGAGGGAATTCTTCTGGATCATGCCACTGGTGTTGTAATTGGTGAAACTGCTGTCATAGGGAATAGAGTTTCACTTATGCAGGTGAGTTATGCCGATTCCTATACGTTGCGTGTTGGTGTGTCATTTAATACCTATCTTCTGCACTGTAGATTTCTGATTGAGTGGAGGATAAGATAATTACACTTTTTCCTTATTTTTTATTTCACTTTGCCTTCAGATTAAAAGATCGAACAGAAATTTGAGTGTCATGGTAAAATACAAGTATCTATATGCCTGACAACATTTATTAGAGTTTTCGAGCATACAATGTTAACAAATTGTTGATCAAAATAACTAATAACTGATAGAAAATTCTGTTATTGTAAAGGCTGGTACAGATGTTCTCCTTTGGAGCCTGACAGCAGTGGTTTCCCTAGCCCTCTAAGTGATTGACTGAATCCGGTAGATGTTTAGGAGTACCTTTCAATGAGTGGAGTGTGTTTTATGTTTACCCTATAATTTTAAATTTGCAACTAGAAAATTGGTTTGTCATCTATCCCTTTTCAATCGTTTATCCTTCAACTTCTTGAAAAAATTGAAAAACCCTTTAAAAAATACTCTAGAGCCCCCTACCCTCTCCTCCCAACAACCAATCCTAAAACTCTTTTTAGCAAAACTTTCCTCAACTTCAGTTCCTACATAAGTCAACCCCCCTTCCAGAGCTCTGCCAGTTCATGAGGTGTGGATTGTTTTGCTTGAATTTGTTGTGGCAGGTAGGGTATACCATCTAATCTATGTTGCATGTGATGCAGAGAGTATAGATAGTACAAGAATCAGTTCATTCTTCCACCATAACATAAACGTATTTGTGGACATGAGGGTAATCCTGTCAAAAGATTCTTCACATGAGGTGCAATAGTATAGTTTTTGTGTAGTGATTTCTAGTGATGTCTTGAGGTGGCAACTAGTGGGAATCCTTCTATGTGAACGGAAACGGATTCCTTAAGCATCTGTTACCTAAATAATTCATTCCATCACCTTGAATATCATCAATCTGTACTATATAAGCTGGGAAACTTGTACTATATAAGCTGGGAAACTTGAATCTCATGGGGAAGTTCATACGTCCTCTATCCCGAAGATCGTCTAAATCGCCGTTTTGGTCACTCACAAAGTTGTGTCCGTTTTTCTAAAACGGAAGTAAATAAACTTCGCACAACAAAATGTTTGGTGTTTGTTACACTCGTCAGTATTCTTCCATCTTCTTCTTCTTCTATAACACTATACTCAAAATACAGCTCACATGTCCTTGCAACAAAATACTAAACAAATATTTTTAAAGGCTTGTCCTAATAAGTGCACAAAGTGAAAGCTGGATAAATTGGGAGGGATTAGTTGCATTTTATTTGCCTCGACCAATTTATGGGAGAGTTCTTATACTTGTCATTGGACAAACTTAAACTTTTGAACCCTGTATCGTGTCATGAAATCCATTTAGTGTCTCCCAGGTACTGAGCACGTAATGAGTAGACAGTCTGCCACTGTGAATCTGTG</genome_strand>
        <mrna_strand>TTCTTTCCAACCGTCTGCAAAATCCTACCACTTTTGGCAACCTCAATTAATGGACATATTCTCTGATGTAATAATGCCACAATCGGTGCATCCAATGCTCTATTCGACTTGATTTACAG............................................................................................GCATGTAAAGATAGAGATCCTTCATGTTTGTCATACCTGTTCTGCTCTTTTGTACCCTTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTATCATGCCTTTACAAACACATCGAGTTGCACATACCCCTATGGAATCAAGGGCGCAAAGTCTTGGCATTGGCGTTACAAAGTCGAGTTAGTGAG........................................................................................................GTTTTTGGAGTTGATATACATCCAG................................................................................................................................................................................CTGCCCAAATTGGAGAGGGAATTCTTCTGGATCATGCCACTGGTGTTGTAATTGGTGAAACTGCTGTCATAGGGAATAGAGTTTCACTTATGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAGCACGTAATGAGTAGACAGTCTGCCACTGTGAATCTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E409716" ref_strand="+" ref_description="SGN-E409716 [PPI-14-J24]">
      <seq>ggataattggttctctctttctcaaatgcgcaccaccaccaccaccaccaccttgcaggtggaagatccacaaataatcggacccaattccgccggcatgcccgaataccgtttagaaaaagttttccctgtatacgctgttggcgtttcggaacccgacccgaacttgatcgtctctgtcgctaacaccgcttctactcttggtgaccctatttgggatgctgttaagcttgaagctaagcttgaggcagagaaggagccaatattaagcagcttcttgtacgcgagtattttgactcatgattgtttggaacgggcattgagctttgttctttccaaccgtctgcaaaatcctacacttttggcaactcaattaatggacatattttctgatgtaataatgcacaatcggtgcattcaatgctccattcgacttgatttacaggcatgtaaagatagagatccttcatgtttgtcatactgttctgctcttttgtaccttaagggttatcatgctttacaaacacatcgagttgcacatacgctatggaatcaagggcgcaaagtcttggcattggcgttacaaagtcgagttagtgaggtttttggagttgatatacatccagctgcccaaattggagagggaattctgctggatcatgccactggtggtgtaattggtgaaactgctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="-" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="43616" stop="40673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43284" g_stop="43080" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="247" r_length="205" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43079" i_stop="42237" i_length="843">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.968" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42236" g_stop="42039" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="445" r_length="198" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42038" i_stop="41947" i_length="92">
            <donor d_prob="0.716" d_score="0.96"/>
            <acceptor a_prob="0.765" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41946" g_stop="41887" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="505" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41886" i_stop="41441" i_length="446">
            <donor d_prob="0.518" d_score="1.00"/>
            <acceptor a_prob="0.714" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41440" g_stop="41345" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="601" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41344" i_stop="41241" i_length="104">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41240" g_stop="41216" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="626" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41215" i_stop="41040" i_length="176">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.947" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41039" g_stop="40973" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="693" r_length="67" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="-" ref_id="SGN-E409716" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E409716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43284" e_stop="43080"/>
          <exon e_start="42236" e_stop="42039"/>
          <exon e_start="41946" e_stop="41887"/>
          <exon e_start="41440" e_stop="41345"/>
          <exon e_start="41240" e_stop="41216"/>
          <exon e_start="41039" e_stop="40973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCACCACCTTACAGGTCGAAGATCCACAAATAATCGGACCCAATTCCCCCGGCATGCCCGAGTACTGTTTAGAAAAAGTTTTCCCCGTTTACGCGGTTGGCGTTTCCGAACCCGACCCGAACTTGATCGTCTCTGTCGCTAACACCGCTTCTACTCTTGGTGACCCTATTTGGGATGCTGTAAAGCTTGAAGCAAAGCTTGAGGTCTGTTTTTTTCATTCTACTTTTTTACTTCTTCTCTTTTTAACTACCACTGTGTATTTGATGTTTTCACAAGAATCAAACACATGTGCAAAGTTTACACAGATAAAAAAAAAGAAATCACGAGTTTGTTGGGATTTGAGCCTGCTTTACACATAGTTTGACCTCAACACAACTGTTTCATTTAAGTTAACAGTTTTTTTTTTTTTTGGTAGAAGTTGTTCTTGGGATTTGATTTATATCAATGGTACAATTGCTAAGAATTTAATATTTTAATCATTTATCCATCCTCGTTTCCAAGTTATTACCTATTCACATGTGCTATAGATAGTTTACTTTTAAATTATGTTGTTCGATCCTTTAAAAATTTCTAACACACATCCGATGCTATTTTAAGAGTTTGAGCAACGTAACTTTTTAAGTCGCATGATAGATTAATTTTCAACACTGATGGTGGTGGATATCAATACTCTATTGTTGGTCTTGGATCAGATGGATGTTTTCGTATGTCCGGTGTTTGTAAGCTTTCATAGTGGAGTTGATGTAACAAATTCGATAGTTTGATAGTGGAGTTAATGTAACAATTTGATGGTGGAGTTAATATAAGAAATTTGATAGTGTAGTTAATGTAACAAATTTGATAGTTTGATGGTGGAGTTAATGTAACAATCGTTTTCAGCTTTTCCATCATCAAGAGAACATGTATAATAAAGATCTGAAATCTACTATGTAAATATAGGTAAGCTGGATTTTTCTCGATTTGTGAGTTTTGTATGGATTTTGAGAATGTGTTTTCGCTGATAGTTTTGTGGAACCATTTAATTTTGTTTCTATTATGCGATTCAGGCAGAGAAGGAGCCAATATTAAGCAGCTTCTTGTACGCAAGTATTTTGACTCATGATTGTTTGGAACGGGCATTGAGCTTTGTTCTTTCCAACCGTCTGCAAAATCCTACACTTTTGGCAACTCAATTAATGGACATATTCTCTGATGTAATAATGCACAATCGGTGCATCCAATGCTCTATTCGACTTGATTTACAGGTGCCCTCGGGATTCCATGAATCTCAAATACATTCTCTCTTTATACTTTTTGGCAAGTATTAACAATTCCTTTTGTCCCTCCTCCTTGTCAGGCATGTAAAGATAGAGATCCTTCATGTTTGTCATACTGTTCTGCTCTTTTGTACCTTAAGGTGCTGTCTTTTGGTCTTTTATTCTATTTAGATGATTATTGTTTATATTTTTGTTTTATTTGTTTCCTATCTCTTTCCCCCATTGGAACCTAATTTTATTACCCTTTCATTTTGTTGAATATTTACTTACAGTTACATCAACTTCTTTTCTAGACACTAACACAGTTGAGATACTAAATCCTATGAACTTGTAAAGGAGCCTCATTAAGTTTACCCTTGGTGTTTATTTCTCCTAAATTCTTAGCTAGGCAAACTATCTTTTAGCAAGTCTACTTCTTATCTTAATAACCTCCATGCTTCATCTCAGTGTTTCTTTATCACCGTTGATTTATATAGAGAGGGATACAAGACGAGAGAATTATGGTTCTCAATCTACTGAGGATTTTGCTTTTCTGATATTTGATTGCGAATTTTTTAGATCCTGATATCAAAACTAATCTGTTTAGGGTTATCATGCTTTACAAACACATCGAGTTGCACATACGCTATGGAATCAAGGGCGCAAAGTCTTGGCATTGGCGTTACAAAGTCGAGTTAGTGAGGTAATCTGATATCCTCTACTTGGTGATAGCCATCATTGTCATTTTCAATAGTACTGACCTATTGCTCTATGTTACTTCATTGTGATTTTGTCACTTCAATACAGGTTTTTGGAGTTGATATACATCCAGGTAATCATTCAGTTTCTCCACCCCACTATCTGCACCAAAAGATATGGTTTCTGTTTTATTCCTGCCAATTAAATTCTCACAAGTTACTTTTGTAAAAACTACCAGTCAATTATCTTATTAGTGGATCTGCATCGATAACTATGACTAAGTTATACCTGTGTTTGCCTATAAAACAGCTGCCCAAATTGGAGAGGGAATTCTTCTGGATCATGCCACTGGTGTTGTAATTGGTGAAACTGCTGT</genome_strand>
        <mrna_strand>CACCACCACCTTGCAGGTGGAAGATCCACAAATAATCGGACCCAATTCCGCCGGCATGCCCGAATACCGTTTAGAAAAAGTTTTCCCTGTATACGCTGTTGGCGTTTCGGAACCCGACCCGAACTTGATCGTCTCTGTCGCTAACACCGCTTCTACTCTTGGTGACCCTATTTGGGATGCTGTTAAGCTTGAAGCTAAGCTTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAGAAGGAGCCAATATTAAGCAGCTTCTTGTACGCGAGTATTTTGACTCATGATTGTTTGGAACGGGCATTGAGCTTTGTTCTTTCCAACCGTCTGCAAAATCCTACACTTTTGGCAACTCAATTAATGGACATATTTTCTGATGTAATAATGCACAATCGGTGCATTCAATGCTCCATTCGACTTGATTTACAG............................................................................................GCATGTAAAGATAGAGATCCTTCATGTTTGTCATACTGTTCTGCTCTTTTGTACCTTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTATCATGCTTTACAAACACATCGAGTTGCACATACGCTATGGAATCAAGGGCGCAAAGTCTTGGCATTGGCGTTACAAAGTCGAGTTAGTGAG........................................................................................................GTTTTTGGAGTTGATATACATCCAG................................................................................................................................................................................CTGCCCAAATTGGAGAGGGAATTCTGCTGGATCATGCCACTGGTGGTGTAATTGGTGAAACTGCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E573927" ref_strand="+" ref_description="SGN-E573927 [33314]">
      <seq>cttaaaatggcttgttcttgtttgagcgaggataattggttctctctttctcaaatgcgcaccacaccaccacacaccttgcaggtggaagatccacaaataatcggacccaattccgccggcatgcccgaataccgtttagaaaaagttttccctgtatacgctgttggcgtttcggaacccgacccgaacttgatcgtctctgtcgctaacaccgcttctactcttggtgaccctatttgggatgctgttaagcttgaagctaagcttgaggcagagaaggagccaatattaagcagcttcttgtacgcgagtattttgactcatgattgtttggaacgggcattgagctttgttctttccaaccgtctgcaaaatcctacacttttggcaactcaattaatggacatattttctgatgtaataatgcacaatcggtgcattcaatgctccattcgacttgatttacaggcatgtaaagatagagatccttcatgtttgtcatactgttctgctcttttgtaccttaagggttatcatgctttacaaacacatcgagttgcacatacgctatggaatcaagggcgcagagtcttggcattggcgttacaaagtcgagttagtgaggtttttggagttgatatacatccaggttatatacctgtgtttgcctataaaacagtggccaaattgggagaggaaattctgctggatcatgccactggtgtttgtaattgggtgaaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="-" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="43643" stop="40678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43346" g_stop="43080" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="0.891"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43079" i_stop="42237" i_length="843">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.968" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42236" g_stop="42039" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="471" r_length="198" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42038" i_stop="41947" i_length="92">
            <donor d_prob="0.716" d_score="0.96"/>
            <acceptor a_prob="0.765" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41946" g_stop="41887" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="531" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41886" i_stop="41441" i_length="446">
            <donor d_prob="0.518" d_score="1.00"/>
            <acceptor a_prob="0.714" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41440" g_stop="41345" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="627" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41344" i_stop="41241" i_length="104">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41240" g_stop="41216" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="652" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41215" i_stop="41070" i_length="146">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.80"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41069" g_stop="40978" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="653" r_stop="747" r_length="95" r_score="0.815"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="-" ref_id="SGN-E573927" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E573927" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43346" e_stop="43080"/>
          <exon e_start="42236" e_stop="42039"/>
          <exon e_start="41946" e_stop="41887"/>
          <exon e_start="41440" e_stop="41345"/>
          <exon e_start="41240" e_stop="41216"/>
          <exon e_start="41069" e_stop="40978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAAATGGCTTGTTCTTGTTTGAGCGACGATACTTGGTTCGCTCTTTCTCAAATGCG-----TACCACCAC-CACCTTACAGGTCGAAGATCCACAAATAATCGGACCCAATTCCCCCGGCATGCCCGAGTACTGTTTAGAAAAAGTTTTCCCCGTTTACGCGGTTGGCGTTTCCGAACCCGACCCGAACTTGATCGTCTCTGTCGCTAACACCGCTTCTACTCTTGGTGACCCTATTTGGGATGCTGTAAAGCTTGAAGCAAAGCTTGAGGTCTGTTTTTTTCATTCTACTTTTTTACTTCTTCTCTTTTTAACTACCACTGTGTATTTGATGTTTTCACAAGAATCAAACACATGTGCAAAGTTTACACAGATAAAAAAAAAGAAATCACGAGTTTGTTGGGATTTGAGCCTGCTTTACACATAGTTTGACCTCAACACAACTGTTTCATTTAAGTTAACAGTTTTTTTTTTTTTTGGTAGAAGTTGTTCTTGGGATTTGATTTATATCAATGGTACAATTGCTAAGAATTTAATATTTTAATCATTTATCCATCCTCGTTTCCAAGTTATTACCTATTCACATGTGCTATAGATAGTTTACTTTTAAATTATGTTGTTCGATCCTTTAAAAATTTCTAACACACATCCGATGCTATTTTAAGAGTTTGAGCAACGTAACTTTTTAAGTCGCATGATAGATTAATTTTCAACACTGATGGTGGTGGATATCAATACTCTATTGTTGGTCTTGGATCAGATGGATGTTTTCGTATGTCCGGTGTTTGTAAGCTTTCATAGTGGAGTTGATGTAACAAATTCGATAGTTTGATAGTGGAGTTAATGTAACAATTTGATGGTGGAGTTAATATAAGAAATTTGATAGTGTAGTTAATGTAACAAATTTGATAGTTTGATGGTGGAGTTAATGTAACAATCGTTTTCAGCTTTTCCATCATCAAGAGAACATGTATAATAAAGATCTGAAATCTACTATGTAAATATAGGTAAGCTGGATTTTTCTCGATTTGTGAGTTTTGTATGGATTTTGAGAATGTGTTTTCGCTGATAGTTTTGTGGAACCATTTAATTTTGTTTCTATTATGCGATTCAGGCAGAGAAGGAGCCAATATTAAGCAGCTTCTTGTACGCAAGTATTTTGACTCATGATTGTTTGGAACGGGCATTGAGCTTTGTTCTTTCCAACCGTCTGCAAAATCCTACACTTTTGGCAACTCAATTAATGGACATATTCTCTGATGTAATAATGCACAATCGGTGCATCCAATGCTCTATTCGACTTGATTTACAGGTGCCCTCGGGATTCCATGAATCTCAAATACATTCTCTCTTTATACTTTTTGGCAAGTATTAACAATTCCTTTTGTCCCTCCTCCTTGTCAGGCATGTAAAGATAGAGATCCTTCATGTTTGTCATACTGTTCTGCTCTTTTGTACCTTAAGGTGCTGTCTTTTGGTCTTTTATTCTATTTAGATGATTATTGTTTATATTTTTGTTTTATTTGTTTCCTATCTCTTTCCCCCATTGGAACCTAATTTTATTACCCTTTCATTTTGTTGAATATTTACTTACAGTTACATCAACTTCTTTTCTAGACACTAACACAGTTGAGATACTAAATCCTATGAACTTGTAAAGGAGCCTCATTAAGTTTACCCTTGGTGTTTATTTCTCCTAAATTCTTAGCTAGGCAAACTATCTTTTAGCAAGTCTACTTCTTATCTTAATAACCTCCATGCTTCATCTCAGTGTTTCTTTATCACCGTTGATTTATATAGAGAGGGATACAAGACGAGAGAATTATGGTTCTCAATCTACTGAGGATTTTGCTTTTCTGATATTTGATTGCGAATTTTTTAGATCCTGATATCAAAACTAATCTGTTTAGGGTTATCATGCTTTACAAACACATCGAGTTGCACATACGCTATGGAATCAAGGGCGCAAAGTCTTGGCATTGGCGTTACAAAGTCGAGTTAGTGAGGTAATCTGATATCCTCTACTTGGTGATAGCCATCATTGTCATTTTCAATAGTACTGACCTATTGCTCTATGTTACTTCATTGTGATTTTGTCACTTCAATACAGGTTTTTGGAGTTGATATACATCCAGGTAATCATTCAGTTTCTCCACCCCACTATCTGCACCAAAAGATATGGTTTCTGTTTTATTCCTGCCAATTAAATTCTCACAAGTTACTTTTGTAAAAACTACCAGTCAATTATCTTATTAGTGGATCTGCATCGATAACTATGACTAAGTTATACCTGTGTTTGCCTATAAAACAGCTGCCCAAATTGGAGAGGGAATTCTTCTGGATCATGCCACTGGTG-TTGTAATT-GGTG-AAACT</genome_strand>
        <mrna_strand>CTTAAAATGGCTTGTTCTTGTTTGAGCGAGGATAATTGGTTCTCTCTTTCTCAAATGCGCACCACACCACCACACACCTTGCAGGTGGAAGATCCACAAATAATCGGACCCAATTCCGCCGGCATGCCCGAATACCGTTTAGAAAAAGTTTTCCCTGTATACGCTGTTGGCGTTTCGGAACCCGACCCGAACTTGATCGTCTCTGTCGCTAACACCGCTTCTACTCTTGGTGACCCTATTTGGGATGCTGTTAAGCTTGAAGCTAAGCTTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAGAAGGAGCCAATATTAAGCAGCTTCTTGTACGCGAGTATTTTGACTCATGATTGTTTGGAACGGGCATTGAGCTTTGTTCTTTCCAACCGTCTGCAAAATCCTACACTTTTGGCAACTCAATTAATGGACATATTTTCTGATGTAATAATGCACAATCGGTGCATTCAATGCTCCATTCGACTTGATTTACAG............................................................................................GCATGTAAAGATAGAGATCCTTCATGTTTGTCATACTGTTCTGCTCTTTTGTACCTTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTATCATGCTTTACAAACACATCGAGTTGCACATACGCTATGGAATCAAGGGCGCAGAGTCTTGGCATTGGCGTTACAAAGTCGAGTTAGTGAG........................................................................................................GTTTTTGGAGTTGATATACATCCAG..................................................................................................................................................GTTATATACCTGTGTTTGCCTATAAAACAGTGGCCAAATTGGGAGAGGAAATTCTGCTGGATCATGCCACTGGTGTTTGTAATTGGGTGAAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E213273" ref_strand="+" ref_description="SGN-E213273 [cLEC-71-G5]">
      <seq>aaatcaaaaaatggcttgttcttgtttgagcgacgatacttggttcgctctttctcaaatgcgtaccaccaccaccttacaggtcgaagatccacaaataatcggacccaattcccccggcatgcccgagtactgtttagaaaaagttttccccgtttacgcggttggcgtttccgaacccgacccgaacttgatcgtctctgtcgctaacaccgcttctactcttggtgaccctatttgggatgctgtaaagcttgaagcaaagcttgaggcagagaaggagccaatattaagcagcttcttgtacgcaagtattttgactcatgattgtttggaacgggcattgagctttgttctttccaaccgtctgcaaaatcctacacttttggcaactcaattaatggacatattctctgatgtaataatgcacaatcggtgcatccaatgctctattcgacttgatttacaggcatgtaaagatagagatccttcatgtttgtcatactgttctgctcttttgtaccttaagggttatcatgctttacaaacacatcgagttgcacatacgctatggaatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="-" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="43650" stop="41090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43350" g_stop="43080" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43079" i_stop="42237" i_length="843">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42236" g_stop="42039" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="469" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42038" i_stop="41947" i_length="92">
            <donor d_prob="0.716" d_score="1.00"/>
            <acceptor a_prob="0.765" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41946" g_stop="41887" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="529" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41886" i_stop="41441" i_length="446">
            <donor d_prob="0.518" d_score="1.00"/>
            <acceptor a_prob="0.714" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41440" g_stop="41390" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="580" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="-" ref_id="SGN-E213273" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213273" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43350" e_stop="43080"/>
          <exon e_start="42236" e_stop="42039"/>
          <exon e_start="41946" e_stop="41887"/>
          <exon e_start="41440" e_stop="41390"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCAAAAAATGGCTTGTTCTTGTTTGAGCGACGATACTTGGTTCGCTCTTTCTCAAATGCGTACCACCACCACCTTACAGGTCGAAGATCCACAAATAATCGGACCCAATTCCCCCGGCATGCCCGAGTACTGTTTAGAAAAAGTTTTCCCCGTTTACGCGGTTGGCGTTTCCGAACCCGACCCGAACTTGATCGTCTCTGTCGCTAACACCGCTTCTACTCTTGGTGACCCTATTTGGGATGCTGTAAAGCTTGAAGCAAAGCTTGAGGTCTGTTTTTTTCATTCTACTTTTTTACTTCTTCTCTTTTTAACTACCACTGTGTATTTGATGTTTTCACAAGAATCAAACACATGTGCAAAGTTTACACAGATAAAAAAAAAGAAATCACGAGTTTGTTGGGATTTGAGCCTGCTTTACACATAGTTTGACCTCAACACAACTGTTTCATTTAAGTTAACAGTTTTTTTTTTTTTTGGTAGAAGTTGTTCTTGGGATTTGATTTATATCAATGGTACAATTGCTAAGAATTTAATATTTTAATCATTTATCCATCCTCGTTTCCAAGTTATTACCTATTCACATGTGCTATAGATAGTTTACTTTTAAATTATGTTGTTCGATCCTTTAAAAATTTCTAACACACATCCGATGCTATTTTAAGAGTTTGAGCAACGTAACTTTTTAAGTCGCATGATAGATTAATTTTCAACACTGATGGTGGTGGATATCAATACTCTATTGTTGGTCTTGGATCAGATGGATGTTTTCGTATGTCCGGTGTTTGTAAGCTTTCATAGTGGAGTTGATGTAACAAATTCGATAGTTTGATAGTGGAGTTAATGTAACAATTTGATGGTGGAGTTAATATAAGAAATTTGATAGTGTAGTTAATGTAACAAATTTGATAGTTTGATGGTGGAGTTAATGTAACAATCGTTTTCAGCTTTTCCATCATCAAGAGAACATGTATAATAAAGATCTGAAATCTACTATGTAAATATAGGTAAGCTGGATTTTTCTCGATTTGTGAGTTTTGTATGGATTTTGAGAATGTGTTTTCGCTGATAGTTTTGTGGAACCATTTAATTTTGTTTCTATTATGCGATTCAGGCAGAGAAGGAGCCAATATTAAGCAGCTTCTTGTACGCAAGTATTTTGACTCATGATTGTTTGGAACGGGCATTGAGCTTTGTTCTTTCCAACCGTCTGCAAAATCCTACACTTTTGGCAACTCAATTAATGGACATATTCTCTGATGTAATAATGCACAATCGGTGCATCCAATGCTCTATTCGACTTGATTTACAGGTGCCCTCGGGATTCCATGAATCTCAAATACATTCTCTCTTTATACTTTTTGGCAAGTATTAACAATTCCTTTTGTCCCTCCTCCTTGTCAGGCATGTAAAGATAGAGATCCTTCATGTTTGTCATACTGTTCTGCTCTTTTGTACCTTAAGGTGCTGTCTTTTGGTCTTTTATTCTATTTAGATGATTATTGTTTATATTTTTGTTTTATTTGTTTCCTATCTCTTTCCCCCATTGGAACCTAATTTTATTACCCTTTCATTTTGTTGAATATTTACTTACAGTTACATCAACTTCTTTTCTAGACACTAACACAGTTGAGATACTAAATCCTATGAACTTGTAAAGGAGCCTCATTAAGTTTACCCTTGGTGTTTATTTCTCCTAAATTCTTAGCTAGGCAAACTATCTTTTAGCAAGTCTACTTCTTATCTTAATAACCTCCATGCTTCATCTCAGTGTTTCTTTATCACCGTTGATTTATATAGAGAGGGATACAAGACGAGAGAATTATGGTTCTCAATCTACTGAGGATTTTGCTTTTCTGATATTTGATTGCGAATTTTTTAGATCCTGATATCAAAACTAATCTGTTTAGGGTTATCATGCTTTACAAACACATCGAGTTGCACATACGCTATGGAATCAA</genome_strand>
        <mrna_strand>AAATCAAAAAATGGCTTGTTCTTGTTTGAGCGACGATACTTGGTTCGCTCTTTCTCAAATGCGTACCACCACCACCTTACAGGTCGAAGATCCACAAATAATCGGACCCAATTCCCCCGGCATGCCCGAGTACTGTTTAGAAAAAGTTTTCCCCGTTTACGCGGTTGGCGTTTCCGAACCCGACCCGAACTTGATCGTCTCTGTCGCTAACACCGCTTCTACTCTTGGTGACCCTATTTGGGATGCTGTAAAGCTTGAAGCAAAGCTTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAGAAGGAGCCAATATTAAGCAGCTTCTTGTACGCAAGTATTTTGACTCATGATTGTTTGGAACGGGCATTGAGCTTTGTTCTTTCCAACCGTCTGCAAAATCCTACACTTTTGGCAACTCAATTAATGGACATATTCTCTGATGTAATAATGCACAATCGGTGCATCCAATGCTCTATTCGACTTGATTTACAG............................................................................................GCATGTAAAGATAGAGATCCTTCATGTTTGTCATACTGTTCTGCTCTTTTGTACCTTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTATCATGCTTTACAAACACATCGAGTTGCACATACGCTATGGAATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E553923" ref_strand="+" ref_description="SGN-E553923 [cTSC-2-K2]">
      <seq>gagtacatgaggtggtgtttggtcagatggaccggctattcttcagcggttcacgcaaaatgtggcgcgcattgctaccgctctctccacttccttttttccttcgactttcttcactgccctttcatggcgacttaaagtcattcgcaatctgaagaattcaagacaaatcaaaatcaaatagctatggctcggaaatcctttccgatcctaaaacaactcatccaacaatcgaccaatcgttgttttacctctaccgtctcgccgcgagccgtcacgctgattccaggcgatggcgttggtccactggtaaccgattcagtcgaacaggtgatgaaggcgatgaaggcacctgtttactttgagcgatacgaagtgcgtggtgatatgaagtgtatgccggaggaagtaattgattcgattaagaagaataaggtttgtctgaaaggagggctaaggactccggttggcggaggtgttagttcgctaaatgtgcaaatgaggaaagagcttgatttgtacgcttccattgtgcattgttttactctgccagggttgcctacgcggcatgaggatgtggatattgttgtgattagggagaatactgagggagagtatgctggccttgagcatgaggttgttcctggtgtcgttgagagccttaaggtgataacaaaatattgctcagaacgaatagcaaaatttgcgtttgagtatgctcatgtgaacaaaagaaagaaagtcacagctgtgcacaaagccaacattatgaaacttgcaaatggtctattcttaaaatcctgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="54632" stop="57202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54932" g_stop="55597" g_length="666"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="666" r_length="666" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55598" i_stop="56763" i_length="1166">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56764" g_stop="56902" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="667" r_stop="805" r_length="139" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E553923" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>805</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553923" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54932" e_stop="55597"/>
          <exon e_start="56764" e_stop="56902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTACATGAGGTGGTGTTTGGTCAGATGGACCGGCTATTCTTCAGCGGTTCACGCAAAATGTGGCGCGCATTGCTACCGCTCTCTCCACTTCCTTTTTTCCTTCGACTTTCTTCACTGCCCTTTCATGGCGACTTAAAGTCATTCGCAATCTGAAGAATTCAAGACAAATCAAAATCAAATAGCTATGGCTCGGAAATCCTTTCCGATCCTAAAACAACTCATCCAACAATCGACCAATCGTTGTTTTACCTCTACCGTCTCGCCGCGAGCCGTCACGCTGATTCCAGGCGATGGCGTTGGTCCACTGGTAACCGATTCAGTCGAACAGGTGATGAAGGCGATGAAGGCACCTGTTTACTTTGAGCGATACGAAGTGCGTGGTGATATGAAGTGTATGCCGGAGGAAGTAATTGATTCGATTAAGAAGAATAAGGTTTGTCTGAAAGGAGGGCTAAGGACTCCGGTTGGCGGAGGTGTTAGTTCGCTAAATGTGCAAATGAGGAAAGAGCTTGATTTGTACGCTTCCATTGTGCATTGTTTTACTCTGCCAGGGTTGCCTACGCGGCATGAGGATGTGGATATTGTTGTGATTAGGGAGAATACTGAGGGAGAGTATGCTGGCCTTGAGCATGAGGTTGTTCCTGGTGTCGTTGAGAGCCTTAAGGTACAGCAATTTTCATTTTGAGAACTTTGTTATTTTAGTATGTGAAGTGAGTTTGTTAGATTCGTAATCTTTTGCTTAATTCTGCTTTGTGAAAACTTTTCCCGCATTGAATTTAAATTTTGATGAATATTGAATGTGTTAAGAAAATGACTACCTAGGTTGCTGTCCAAAGGACCTCTCTTAATAGGCATGTGTGTTTAGCTAAGACAAACACAAGGATGCCAAAATGCCTAGAGTCATGCTGGTACAATTTTGTCCTTTCAGGAGCCTTTATTGACTATTGCAATGAAGTGGGTCCAGATGGTTCGGATGGATTATATAGACAACTCATACTAGTATGGGATTGGGCATAGTTTTTGTTGTTGTATCCAACTTTACTGTATCTAAAAAATGGGATCATTTACTTTTTAAAGTAGGATTGGACGTGTAGATGGCTCTCATGTACATTTGGGTACTCTGAATCCTCAAATTGCTAAAAGGATGTAACTATTTGGTGTTCCAAATGTGCACTTATCCTTGACGATTTAGATCATAGTCATGTTTAGCCCCTTTGTTGGGTAGTGTGCACAAGGCCCTATGTATGACAGTAGGGGGCACAACAAACCCCTGATTCCTTAATAGGTTAGTATGGCTGCTATGGCAGGCCCCATGTTGGGCACAGTGCACATTATTTGATTAAATGAGGAGTACCTTTTGCGCTCCATCCTTATGCTGGAGGGTGCAATTTTTCAGAAGCATTGCATATCTTCTTCATTTTATGACATTATTACCATGTATAGAATATGCTTGATAGACGATGTAATCTTGAGTGAAGTGTATGGATTGTCAGTTGCAGTTGAACCTGTTTGATCTTGGTTTGTGCATGAGGAAGAATTGCATAGTTAGAGCTATCTTTACCTGGTCACAACGTTAGAGAAATGGGCCAGCTTAGCAAGATGGACATATGATATTTTCTTTATAACATTCTTTCTGTTGTAACATTACCAATTTCTGCCTATGTGGTTTAATGATATTCTTATTATGCTCGTTTCTTTCCTCTTCTATGAAAGAGTTGTTTTTTCTCTTCACTAATTTTCCTTTGTGGTTCTTATTATATCAAATCGTCTGTAAAGTTTTCCTGTTCCACAACTTGCTTCATCCCATACTTTCATGTGTTCCCTTTCCAGGTGATAACAAAATATTGCTCAGAACGAATAGCAAAATTTGCGTTTGAGTATGCTCATGTGAACAAAAGAAAGAAGGTCACAGCTGTGCACAAAGCCAACATTATGAAACTTGCAGATGGTCTATTCTTAGAATCCTGTA</genome_strand>
        <mrna_strand>GAGTACATGAGGTGGTGTTTGGTCAGATGGACCGGCTATTCTTCAGCGGTTCACGCAAAATGTGGCGCGCATTGCTACCGCTCTCTCCACTTCCTTTTTTCCTTCGACTTTCTTCACTGCCCTTTCATGGCGACTTAAAGTCATTCGCAATCTGAAGAATTCAAGACAAATCAAAATCAAATAGCTATGGCTCGGAAATCCTTTCCGATCCTAAAACAACTCATCCAACAATCGACCAATCGTTGTTTTACCTCTACCGTCTCGCCGCGAGCCGTCACGCTGATTCCAGGCGATGGCGTTGGTCCACTGGTAACCGATTCAGTCGAACAGGTGATGAAGGCGATGAAGGCACCTGTTTACTTTGAGCGATACGAAGTGCGTGGTGATATGAAGTGTATGCCGGAGGAAGTAATTGATTCGATTAAGAAGAATAAGGTTTGTCTGAAAGGAGGGCTAAGGACTCCGGTTGGCGGAGGTGTTAGTTCGCTAAATGTGCAAATGAGGAAAGAGCTTGATTTGTACGCTTCCATTGTGCATTGTTTTACTCTGCCAGGGTTGCCTACGCGGCATGAGGATGTGGATATTGTTGTGATTAGGGAGAATACTGAGGGAGAGTATGCTGGCCTTGAGCATGAGGTTGTTCCTGGTGTCGTTGAGAGCCTTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATAACAAAATATTGCTCAGAACGAATAGCAAAATTTGCGTTTGAGTATGCTCATGTGAACAAAAGAAAGAAAGTCACAGCTGTGCACAAAGCCAACATTATGAAACTTGCAAATGGTCTATTCTTAAAATCCTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E339343" ref_strand="+" ref_description="SGN-E339343 [cTOF-4-N22]">
      <seq>gcaaaatgtggcgcgcattgctaccgctctctccacttccttttttccttcgactttcttcactgccctttcatggcgacttaaagtcattcgcaatctgaagaattcaagacaaatcaaaatcaaatagctatggctcggaaatcctttccgatcctaaaacaactcatccaacaatcgaccaatcgttgttttacctctaccgtctcgccgcgagccgtcacgctgattccaggcgatggcgttggtccactggtaaccgattcagtcgaacaggtgatgaaggcgatgaaggcacctgtttactttgagcgatacgaagtgcgtggtgatatgaagtgtatgccggaggaagtaattgattcgattaagaagaataaggtttgtctgaaaggagggctaaggactccggttggcggaggtgttagttcgctaaatgtgcaaatgaggaaagagcttgatttgtacgcttccattgtgcattgttttactctgccagggttgcctacgcggcatgaggatgtggatattgttgtgattagggagaatactgagggagagtatgctggccttgagcatgaggttgttcctggtgtcgttgagagccttaaggtgataacaaaatattgctcagaacgaatagcaaaatttgcgtttgagtatgctcatgtgaacaaaagaaagaaggtcacagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="54686" stop="57147"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54986" g_stop="55597" g_length="612"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="612" r_length="612" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55598" i_stop="56763" i_length="1166">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56764" g_stop="56847" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="696" r_length="84" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E339343" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339343" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54986" e_stop="55597"/>
          <exon e_start="56764" e_stop="56847"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAATGTGGCGCGCATTGCTACCGCTCTCTCCACTTCCTTTTTTCCTTCGACTTTCTTCACTGCCCTTTCATGGCGACTTAAAGTCATTCGCAATCTGAAGAATTCAAGACAAATCAAAATCAAATAGCTATGGCTCGGAAATCCTTTCCGATCCTAAAACAACTCATCCAACAATCGACCAATCGTTGTTTTACCTCTACCGTCTCGCCGCGAGCCGTCACGCTGATTCCAGGCGATGGCGTTGGTCCACTGGTAACCGATTCAGTCGAACAGGTGATGAAGGCGATGAAGGCACCTGTTTACTTTGAGCGATACGAAGTGCGTGGTGATATGAAGTGTATGCCGGAGGAAGTAATTGATTCGATTAAGAAGAATAAGGTTTGTCTGAAAGGAGGGCTAAGGACTCCGGTTGGCGGAGGTGTTAGTTCGCTAAATGTGCAAATGAGGAAAGAGCTTGATTTGTACGCTTCCATTGTGCATTGTTTTACTCTGCCAGGGTTGCCTACGCGGCATGAGGATGTGGATATTGTTGTGATTAGGGAGAATACTGAGGGAGAGTATGCTGGCCTTGAGCATGAGGTTGTTCCTGGTGTCGTTGAGAGCCTTAAGGTACAGCAATTTTCATTTTGAGAACTTTGTTATTTTAGTATGTGAAGTGAGTTTGTTAGATTCGTAATCTTTTGCTTAATTCTGCTTTGTGAAAACTTTTCCCGCATTGAATTTAAATTTTGATGAATATTGAATGTGTTAAGAAAATGACTACCTAGGTTGCTGTCCAAAGGACCTCTCTTAATAGGCATGTGTGTTTAGCTAAGACAAACACAAGGATGCCAAAATGCCTAGAGTCATGCTGGTACAATTTTGTCCTTTCAGGAGCCTTTATTGACTATTGCAATGAAGTGGGTCCAGATGGTTCGGATGGATTATATAGACAACTCATACTAGTATGGGATTGGGCATAGTTTTTGTTGTTGTATCCAACTTTACTGTATCTAAAAAATGGGATCATTTACTTTTTAAAGTAGGATTGGACGTGTAGATGGCTCTCATGTACATTTGGGTACTCTGAATCCTCAAATTGCTAAAAGGATGTAACTATTTGGTGTTCCAAATGTGCACTTATCCTTGACGATTTAGATCATAGTCATGTTTAGCCCCTTTGTTGGGTAGTGTGCACAAGGCCCTATGTATGACAGTAGGGGGCACAACAAACCCCTGATTCCTTAATAGGTTAGTATGGCTGCTATGGCAGGCCCCATGTTGGGCACAGTGCACATTATTTGATTAAATGAGGAGTACCTTTTGCGCTCCATCCTTATGCTGGAGGGTGCAATTTTTCAGAAGCATTGCATATCTTCTTCATTTTATGACATTATTACCATGTATAGAATATGCTTGATAGACGATGTAATCTTGAGTGAAGTGTATGGATTGTCAGTTGCAGTTGAACCTGTTTGATCTTGGTTTGTGCATGAGGAAGAATTGCATAGTTAGAGCTATCTTTACCTGGTCACAACGTTAGAGAAATGGGCCAGCTTAGCAAGATGGACATATGATATTTTCTTTATAACATTCTTTCTGTTGTAACATTACCAATTTCTGCCTATGTGGTTTAATGATATTCTTATTATGCTCGTTTCTTTCCTCTTCTATGAAAGAGTTGTTTTTTCTCTTCACTAATTTTCCTTTGTGGTTCTTATTATATCAAATCGTCTGTAAAGTTTTCCTGTTCCACAACTTGCTTCATCCCATACTTTCATGTGTTCCCTTTCCAGGTGATAACAAAATATTGCTCAGAACGAATAGCAAAATTTGCGTTTGAGTATGCTCATGTGAACAAAAGAAAGAAGGTCACAGCT</genome_strand>
        <mrna_strand>GCAAAATGTGGCGCGCATTGCTACCGCTCTCTCCACTTCCTTTTTTCCTTCGACTTTCTTCACTGCCCTTTCATGGCGACTTAAAGTCATTCGCAATCTGAAGAATTCAAGACAAATCAAAATCAAATAGCTATGGCTCGGAAATCCTTTCCGATCCTAAAACAACTCATCCAACAATCGACCAATCGTTGTTTTACCTCTACCGTCTCGCCGCGAGCCGTCACGCTGATTCCAGGCGATGGCGTTGGTCCACTGGTAACCGATTCAGTCGAACAGGTGATGAAGGCGATGAAGGCACCTGTTTACTTTGAGCGATACGAAGTGCGTGGTGATATGAAGTGTATGCCGGAGGAAGTAATTGATTCGATTAAGAAGAATAAGGTTTGTCTGAAAGGAGGGCTAAGGACTCCGGTTGGCGGAGGTGTTAGTTCGCTAAATGTGCAAATGAGGAAAGAGCTTGATTTGTACGCTTCCATTGTGCATTGTTTTACTCTGCCAGGGTTGCCTACGCGGCATGAGGATGTGGATATTGTTGTGATTAGGGAGAATACTGAGGGAGAGTATGCTGGCCTTGAGCATGAGGTTGTTCCTGGTGTCGTTGAGAGCCTTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATAACAAAATATTGCTCAGAACGAATAGCAAAATTTGCGTTTGAGTATGCTCATGTGAACAAAAGAAAGAAGGTCACAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E340334" ref_strand="+" ref_description="SGN-E340334 [cTOF-2-M10]">
      <seq>ttcaagacaaatcaaaatcaaatagctatggctcggaaatcctttccgatcctaaaacaactcatccaacaatcgaccaatcgttgttttacctctaccgtctcgccgcgagccgtcacgctgattccaggcgatggcgttggtccactggtaaccgattcagtcgaacaggtgatgaaggcgatgaaggcacctgtttactttgagcgatacgaagtgcgtggtgatatgaagtgtatgccggaggaagtaattgattcgattaagaagaataaggtttgtctgaaaggagggctaaggactccggttggcggaggtgttagttcgctaaatgtgcaaatgaggaaagagcttgatttgtacgcttccattgtgcattgttttactctgccagggttgcctacgcggcatgaggatgtggatattgttgtgattagggagaatactgagggagagtatgctggccttgagcatgaggttgttcctggtgtcgttgagagccttaaggtgataacaaaatattgctcagaacgaatagcaaaatttgcgtttgagtatgctcatgtgaacaaaagaaagaaggtcacagctgtgcacaaagccaacattatgaaacttgcagatggtctattcttagaatcctgtagggaagttgcagctaaatatccagaaatacagtatgaggagattattgtggataattgctgcatgcaacttgtctcaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="54791" stop="57282"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55091" g_stop="55597" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55598" i_stop="56763" i_length="1166">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56764" g_stop="56982" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="726" r_length="219" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E340334" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340334" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55091" e_stop="55597"/>
          <exon e_start="56764" e_stop="56982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAGACAAATCAAAATCAAATAGCTATGGCTCGGAAATCCTTTCCGATCCTAAAACAACTCATCCAACAATCGACCAATCGTTGTTTTACCTCTACCGTCTCGCCGCGAGCCGTCACGCTGATTCCAGGCGATGGCGTTGGTCCACTGGTAACCGATTCAGTCGAACAGGTGATGAAGGCGATGAAGGCACCTGTTTACTTTGAGCGATACGAAGTGCGTGGTGATATGAAGTGTATGCCGGAGGAAGTAATTGATTCGATTAAGAAGAATAAGGTTTGTCTGAAAGGAGGGCTAAGGACTCCGGTTGGCGGAGGTGTTAGTTCGCTAAATGTGCAAATGAGGAAAGAGCTTGATTTGTACGCTTCCATTGTGCATTGTTTTACTCTGCCAGGGTTGCCTACGCGGCATGAGGATGTGGATATTGTTGTGATTAGGGAGAATACTGAGGGAGAGTATGCTGGCCTTGAGCATGAGGTTGTTCCTGGTGTCGTTGAGAGCCTTAAGGTACAGCAATTTTCATTTTGAGAACTTTGTTATTTTAGTATGTGAAGTGAGTTTGTTAGATTCGTAATCTTTTGCTTAATTCTGCTTTGTGAAAACTTTTCCCGCATTGAATTTAAATTTTGATGAATATTGAATGTGTTAAGAAAATGACTACCTAGGTTGCTGTCCAAAGGACCTCTCTTAATAGGCATGTGTGTTTAGCTAAGACAAACACAAGGATGCCAAAATGCCTAGAGTCATGCTGGTACAATTTTGTCCTTTCAGGAGCCTTTATTGACTATTGCAATGAAGTGGGTCCAGATGGTTCGGATGGATTATATAGACAACTCATACTAGTATGGGATTGGGCATAGTTTTTGTTGTTGTATCCAACTTTACTGTATCTAAAAAATGGGATCATTTACTTTTTAAAGTAGGATTGGACGTGTAGATGGCTCTCATGTACATTTGGGTACTCTGAATCCTCAAATTGCTAAAAGGATGTAACTATTTGGTGTTCCAAATGTGCACTTATCCTTGACGATTTAGATCATAGTCATGTTTAGCCCCTTTGTTGGGTAGTGTGCACAAGGCCCTATGTATGACAGTAGGGGGCACAACAAACCCCTGATTCCTTAATAGGTTAGTATGGCTGCTATGGCAGGCCCCATGTTGGGCACAGTGCACATTATTTGATTAAATGAGGAGTACCTTTTGCGCTCCATCCTTATGCTGGAGGGTGCAATTTTTCAGAAGCATTGCATATCTTCTTCATTTTATGACATTATTACCATGTATAGAATATGCTTGATAGACGATGTAATCTTGAGTGAAGTGTATGGATTGTCAGTTGCAGTTGAACCTGTTTGATCTTGGTTTGTGCATGAGGAAGAATTGCATAGTTAGAGCTATCTTTACCTGGTCACAACGTTAGAGAAATGGGCCAGCTTAGCAAGATGGACATATGATATTTTCTTTATAACATTCTTTCTGTTGTAACATTACCAATTTCTGCCTATGTGGTTTAATGATATTCTTATTATGCTCGTTTCTTTCCTCTTCTATGAAAGAGTTGTTTTTTCTCTTCACTAATTTTCCTTTGTGGTTCTTATTATATCAAATCGTCTGTAAAGTTTTCCTGTTCCACAACTTGCTTCATCCCATACTTTCATGTGTTCCCTTTCCAGGTGATAACAAAATATTGCTCAGAACGAATAGCAAAATTTGCGTTTGAGTATGCTCATGTGAACAAAAGAAAGAAGGTCACAGCTGTGCACAAAGCCAACATTATGAAACTTGCAGATGGTCTATTCTTAGAATCCTGTAGGGAAGTTGCAGCTAAATATCCAGAAATACAGTATGAGGAGATTATTGTGGATAATTGCTGCATGCAACTTGTCTCAAGG</genome_strand>
        <mrna_strand>TTCAAGACAAATCAAAATCAAATAGCTATGGCTCGGAAATCCTTTCCGATCCTAAAACAACTCATCCAACAATCGACCAATCGTTGTTTTACCTCTACCGTCTCGCCGCGAGCCGTCACGCTGATTCCAGGCGATGGCGTTGGTCCACTGGTAACCGATTCAGTCGAACAGGTGATGAAGGCGATGAAGGCACCTGTTTACTTTGAGCGATACGAAGTGCGTGGTGATATGAAGTGTATGCCGGAGGAAGTAATTGATTCGATTAAGAAGAATAAGGTTTGTCTGAAAGGAGGGCTAAGGACTCCGGTTGGCGGAGGTGTTAGTTCGCTAAATGTGCAAATGAGGAAAGAGCTTGATTTGTACGCTTCCATTGTGCATTGTTTTACTCTGCCAGGGTTGCCTACGCGGCATGAGGATGTGGATATTGTTGTGATTAGGGAGAATACTGAGGGAGAGTATGCTGGCCTTGAGCATGAGGTTGTTCCTGGTGTCGTTGAGAGCCTTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATAACAAAATATTGCTCAGAACGAATAGCAAAATTTGCGTTTGAGTATGCTCATGTGAACAAAAGAAAGAAGGTCACAGCTGTGCACAAAGCCAACATTATGAAACTTGCAGATGGTCTATTCTTAGAATCCTGTAGGGAAGTTGCAGCTAAATATCCAGAAATACAGTATGAGGAGATTATTGTGGATAATTGCTGCATGCAACTTGTCTCAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E708691" ref_strand="+" ref_description="SGN-E708691 [FA36CA10]">
      <seq>cgttagttcgctaaatgtgcaaatgaggaaagagcttgatttgtacgcttccattgtgcattgttttactctgccagggttgcctacgcggcatgaggatgtggatattgttgtgattagggagaatactgagggagagtatgctggccttgagcatgaggttgttcctggtgtcgttgagagccttaaggtgataacaaaatattgctcagaacgaatagcaaaatttgcgtttgagtatgctcatgtgaacaaaagaaagaaggtcacagctgtgcacaaagccaacattatgaaacttgcagatggtctattcttagaatcctgtagggaagttgcagctaaatatccagaaatacagtatgaggagattattgtggataattgctgcatgcaacttgtctcaaggccagagcaatttgatgtcatggtgactcccaacctctatggaaatttgattgcaaatacggctgctggcatagctggtggcacaggagtcatgccaggaggtaatgttggcgctgatcaagcagtttttgagcaaggtgcttccgctgggaatgtcggcaatgaaaagatattgaagcttaagagagcaaatccagtggcgcttcttctgtcgtcagcaatgatgctgagacatcttgaatttccgtcatatgctgatcgtttagaaactgctgtaagacatgtaatagaagagggaaaattcaggacaaaggatgttggaggggatagctctactcaagaagttgttgatgcaattatagctgctttagactaatcggaattgacagtcgtcaagtttttaggagaattattcactgtccagagatctacttggcctattttttgcacagctgcaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="55109" stop="60909"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55408" g_stop="55597" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55598" i_stop="56763" i_length="1166">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56764" g_stop="57003" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="430" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57004" i_stop="58414" i_length="1411">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58415" g_stop="58493" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="509" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58494" i_stop="60249" i_length="1756">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60250" g_stop="60609" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="869" r_length="360" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E708691" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>869</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708691" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55408" e_stop="55597"/>
          <exon e_start="56764" e_stop="57003"/>
          <exon e_start="58415" e_stop="58493"/>
          <exon e_start="60250" e_stop="60609"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTAGTTCGCTAAATGTGCAAATGAGGAAAGAGCTTGATTTGTACGCTTCCATTGTGCATTGTTTTACTCTGCCAGGGTTGCCTACGCGGCATGAGGATGTGGATATTGTTGTGATTAGGGAGAATACTGAGGGAGAGTATGCTGGCCTTGAGCATGAGGTTGTTCCTGGTGTCGTTGAGAGCCTTAAGGTACAGCAATTTTCATTTTGAGAACTTTGTTATTTTAGTATGTGAAGTGAGTTTGTTAGATTCGTAATCTTTTGCTTAATTCTGCTTTGTGAAAACTTTTCCCGCATTGAATTTAAATTTTGATGAATATTGAATGTGTTAAGAAAATGACTACCTAGGTTGCTGTCCAAAGGACCTCTCTTAATAGGCATGTGTGTTTAGCTAAGACAAACACAAGGATGCCAAAATGCCTAGAGTCATGCTGGTACAATTTTGTCCTTTCAGGAGCCTTTATTGACTATTGCAATGAAGTGGGTCCAGATGGTTCGGATGGATTATATAGACAACTCATACTAGTATGGGATTGGGCATAGTTTTTGTTGTTGTATCCAACTTTACTGTATCTAAAAAATGGGATCATTTACTTTTTAAAGTAGGATTGGACGTGTAGATGGCTCTCATGTACATTTGGGTACTCTGAATCCTCAAATTGCTAAAAGGATGTAACTATTTGGTGTTCCAAATGTGCACTTATCCTTGACGATTTAGATCATAGTCATGTTTAGCCCCTTTGTTGGGTAGTGTGCACAAGGCCCTATGTATGACAGTAGGGGGCACAACAAACCCCTGATTCCTTAATAGGTTAGTATGGCTGCTATGGCAGGCCCCATGTTGGGCACAGTGCACATTATTTGATTAAATGAGGAGTACCTTTTGCGCTCCATCCTTATGCTGGAGGGTGCAATTTTTCAGAAGCATTGCATATCTTCTTCATTTTATGACATTATTACCATGTATAGAATATGCTTGATAGACGATGTAATCTTGAGTGAAGTGTATGGATTGTCAGTTGCAGTTGAACCTGTTTGATCTTGGTTTGTGCATGAGGAAGAATTGCATAGTTAGAGCTATCTTTACCTGGTCACAACGTTAGAGAAATGGGCCAGCTTAGCAAGATGGACATATGATATTTTCTTTATAACATTCTTTCTGTTGTAACATTACCAATTTCTGCCTATGTGGTTTAATGATATTCTTATTATGCTCGTTTCTTTCCTCTTCTATGAAAGAGTTGTTTTTTCTCTTCACTAATTTTCCTTTGTGGTTCTTATTATATCAAATCGTCTGTAAAGTTTTCCTGTTCCACAACTTGCTTCATCCCATACTTTCATGTGTTCCCTTTCCAGGTGATAACAAAATATTGCTCAGAACGAATAGCAAAATTTGCGTTTGAGTATGCTCATGTGAACAAAAGAAAGAAGGTCACAGCTGTGCACAAAGCCAACATTATGAAACTTGCAGATGGTCTATTCTTAGAATCCTGTAGGGAAGTTGCAGCTAAATATCCAGAAATACAGTATGAGGAGATTATTGTGGATAATTGCTGCATGCAACTTGTCTCAAGGCCAGAGCAATTTGATGTCATGGTATGGGGATATGCTTCCTTGGCTTTTCTTTTACTAAGTCCTTCAATTCTAGCTTCCTTTATAAATCTGATATCTAATGGTGTCAGATAAGTTTATCACAAAATGAAGTCTAATGGCGAGTGCTATCAATCTTGTGTAATCATTGAGGAGAGGATGGGCATACTGAGAGCTTGTCCTGTCTGTTGTTTGTGTGTAGTTGGATAATTAGCTTGACTTTTGAAGTTCAAAAATTCCTTGAAGATGCTATGAGACTAGTTCATATGGTACTCGGCTATGGATTAACGACACGCAAATGATATTGGAAAGTGTGTCTTCACAGAGTTGCTTACGTAGTCAAAGGGCCTACCCTTGGCAGCGTGTCTCTAGCATCTACTTTGACCTCTTATTTTGTGTTCTTACTGGTAATGGTTGAGAAAAGTGATGTGATGAAATAACAAAGTCCAAATGACAATGTCAGCAAAAATATTAAGAGTCTTTTTCCTTCTCCTTCTACAACTTGAATAATCTTGCACCTGGGATTTCCGAGCGTCCTCTTTGATTTTCTTGTAAATAATATGAATCAGCGAGCTCGACTACAACAACACCATACCAAAGTAGTCCCACAAAGTAGGGTCTGGGGAGGGGAAGGGGGAGGGTAGAGTGTATGCAAACCTTACCCCTACACTCAGCGGTAGAGAGGGTGTTTCCTATAGACCCGCAGCTCAAGCAAAAACAAATCAAAGCAATCCAGAAAAAGAAGTAATGGATGTGAAAGTATAACAAAGCATGCTGAACAGTAAATACAACAAAATAATACAATTACCGAAGCACAAGAAACTATTAGTATGAATCAGTGAGCTTGATTGGTGGTAAAAAATGCTTGCGTCACTCAGTGCAACTTAAAGGAAAGGGAATTATGTATTGCTATCCCGGCAGCTATTTGGTGGACTACTCGAAGAGGATATTTTTCAACACAAACAAGAGAACGTACATAGTCTTAAATTTAAATGTATTCTTTTTCTTTCTTTTTGTATAAAATGGCAAATATAAATGTTACTTAGAATGTGAGGCCGTGCTTTACTTTGTTTTAACTCCTTACACACTCTGTTTTAACTGACCGAAGCTTGTAACTGGTTCAATGTTCCATCAAGCCTTTGTTGCTTGTCATACATCTATAAAAGCTTACCTTATAAAAATAAGAATATCACTGAGAAAGTATGGATGGAAAAACATTTAAGATTAGCTAAGGCAGGTATCTTCCCCTTGTCTTTCTCATGGTGGGTTTTGTAGATTAAGAGTCATCAGCTTTCCTGCATCGGTCCAGAAGCAAGTTTTAGTGTTCTATTCTGCCTCTTTTTATTAACCCCTTTCCTCATTTTGATACATCGCTGATAAGATTGTTGCTGAAGTACAAGAAATTGCAATTATGTAGGTGACTCCCAACCTCTATGGAAATTTGATTGCAAATACGGCTGCTGGCATAGCTGGTGGCACAGGAGTCATGCCAGGAGGTAAATTTCTGATATATATATATATATATATATATAATTATTTACATCTCTCTATTATGCTAAGTTATTGACTTTGGCTGGCATTAGCTGTCTTTTTTTGGTCTATAGATGACAATTTGATCTTAAGATTTTCACTAGTTAAGATACCCTTCATTTGGTGTCTAATATGTAGCTCACATTTCATCAAACATAATTCTGGTGATCTAAACCTGTTAAACTTTCTGGCAGCTAAATGAGCAAACTCCTTTGTAGTTTGATTTCTTGGTAGCTTAAGTCTAGCTATACTGCAATAAGAATGGAAAATTGATCCAATAAACTCTCTAAATGGACAGAAAAATCATATCTTATAGAACTTGAGGTACTTGAAAAGAAAAAGAAATACAGTGGATGGGCGCATCATCTGTTGGACTTCAGTATAACCAGATTGACATTAGTGCTGCGAAATCAAGGCAGAGGTAGTGGAAATCGTTGCAGATTGAGATTACGACACAGTCATGCCATAGGTTAAGCAGACTCAGATTGCAAATACATAACCTAACTACAAAAAATTCATCGGTCAAGAGTATCAGATTTAGACAATCTTATGCACATTAGGTTAGAACAGAGAAGTCGTCTGCAGAGGTTGATTATCTGAGGGCTAGAGAATAGCTGAAGTCGCACAATATTTAGTAGAGGAGGATATAGAATTTCAATATAAGAAATTTGGTTACACTAGGGATTAGGTCATCTTAACAAATGTTTTTAGTTTGAAAACCGGAGCTCACATAACCTAGCTCTCTCATTTGTTGGAGGTGCAGAGAAGGCTCAGAACATGGGTAACTAAGGTGAACAACACATTTTCACTGTGGATAGTATTAGCATTATCCACATAGTCCTTGTCCTCCAATTTCTGTTACTAACTGTTGTTTCTTGTGCCTCAGTTTTCACATTATTTTGTTGTTCTTTTTTTGTGTGTTTTCATTATTATTTGCTATGTCTTTTTTACTTTGTATTTTCTCTTCGATACCTGTTTGATATGCATTCCTTGAGTTGATGATATTTCAGAAACAACCTCTCTACCTCCATGAGGTAAGGGGGTAAGGTCTTGATATACTTTACCCTCTCCAAGCCCCACTAGTGGGATTTCACTCCTGCATCTCAATTACCTTGTTCTGTGTTGCTTTTTCTCTTCATTTTTCTATTGGATGGATCTTTATGTTTTTCCAAACTTCACTGTTGGCTTACTCAGTTAGCATGTCCAATGTAAATGCAGCTGGTCAATTATTTTTGTGGTTTCAATATCTCTTGAAAGGACTTTGTAAGTTCCAACTTCCCAATGGGGCTGGTGCGGGTGAACCATTGTGATGCTTGACCCAAAGTCTCTACATCGCTTCTTTCCCCCCTCCTCCATGACTGTGAGTAGAAGTGTTGATAAAGAAGCTTCTAGTATAATGATATCCATTTGATTACTGGTTGGTTCCTGAATTGGTTAATGCTCTTTTGCTTATATGGGACAGCTCAGACTAGTTGCTAATACTTAACAAAGTGCAGTAGAACCCTTTTTGTGAGTGCTTGCTTCTTCTCGCGAGGCATCACCAGTATGCTCATCAGTACTTGTTGATAATTTATTTGTTGGAAGAAAGATTAAAGCCTCATCCTTCTCTATTCTACAGATCATTTATAGTGTTTATCAGGGAACACTTAAAGTATTCTCAGCGTTTCCTCCTCAAGTATTAGGCCGTGTATGAGACATAATGTAGGACTGTTGTTCTCTCAGGTAATGTTGGCGCTGATCAAGCAGTTTTTGAGCAAGGTGCTTCCGCTGGGAATGTCGGCAATGAAAAGATATTGAAGCTTAAGAGAGCAAATCCAGTGGCGCTTCTTCTGTCGTCAGCAATGATGCTGAGACATCTTGAATTTCCGTCATATGCTGATCGTTTAGAAACTGCTGTAAGACATGTAATAGAAGAGGGAAAATTCAGGACAAAGGATGTTGGAGGGGATAGCTCTACTCAAGAAGTTGTTGATGCAATTATAGCTGCTTTAGACTAATCGGAATTGACAGTCGTCAAGTTTTTAGGAGAATTATTCACTGTCCAGAGATCTACTTGGCCTATTTTTTGCACAGCTGCAATTT</genome_strand>
        <mrna_strand>CGTTAGTTCGCTAAATGTGCAAATGAGGAAAGAGCTTGATTTGTACGCTTCCATTGTGCATTGTTTTACTCTGCCAGGGTTGCCTACGCGGCATGAGGATGTGGATATTGTTGTGATTAGGGAGAATACTGAGGGAGAGTATGCTGGCCTTGAGCATGAGGTTGTTCCTGGTGTCGTTGAGAGCCTTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATAACAAAATATTGCTCAGAACGAATAGCAAAATTTGCGTTTGAGTATGCTCATGTGAACAAAAGAAAGAAGGTCACAGCTGTGCACAAAGCCAACATTATGAAACTTGCAGATGGTCTATTCTTAGAATCCTGTAGGGAAGTTGCAGCTAAATATCCAGAAATACAGTATGAGGAGATTATTGTGGATAATTGCTGCATGCAACTTGTCTCAAGGCCAGAGCAATTTGATGTCATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACTCCCAACCTCTATGGAAATTTGATTGCAAATACGGCTGCTGGCATAGCTGGTGGCACAGGAGTCATGCCAGGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGTTGGCGCTGATCAAGCAGTTTTTGAGCAAGGTGCTTCCGCTGGGAATGTCGGCAATGAAAAGATATTGAAGCTTAAGAGAGCAAATCCAGTGGCGCTTCTTCTGTCGTCAGCAATGATGCTGAGACATCTTGAATTTCCGTCATATGCTGATCGTTTAGAAACTGCTGTAAGACATGTAATAGAAGAGGGAAAATTCAGGACAAAGGATGTTGGAGGGGATAGCTCTACTCAAGAAGTTGTTGATGCAATTATAGCTGCTTTAGACTAATCGGAATTGACAGTCGTCAAGTTTTTAGGAGAATTATTCACTGTCCAGAGATCTACTTGGCCTATTTTTTGCACAGCTGCAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E227190" ref_strand="+" ref_description="SGN-E227190 [cLEL-30-I21](-)">
      <seq>gagcaatttgatgtcatggtgactcccacctctatggaaatttgattgcaaatacggctgctggcatagctggtggcacaggagtcatgccaggaggtaatgttggcgctgatcaagcagtttttgagcaaggtgcttccgctgggaatgtcggcaatgaaaagatattgaagcttaagagagcaaatccagtggcgcttcttctgtcgtcagcaatgatgctgagacatcttgaatttccgtcatatgctgatcgtttagaaactgctgtaagacatgtaatagaagagggaaaattcaggacaaaggatgttggaggggatagctctactcaagaagttgttgatgcaattatagctgctttagactaatcggaattgacagtcgtcaagtttttaggagaattattcactgtccagagatctacttggcctattttttgcacagctgcaattttgttttaactttctgagaatatttgctgctacaattctaaattatctttttttcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="56686" stop="84932"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56986" g_stop="57003" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57004" i_stop="58414" i_length="1411">
            <donor d_prob="0.903" d_score="0.00"/>
            <acceptor a_prob="0.963" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58415" g_stop="58493" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="96" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58494" i_stop="60249" i_length="1756">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60250" g_stop="60679" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="526" r_length="430" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E227190" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E227190" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56986" e_stop="57003"/>
          <exon e_start="58415" e_stop="58493"/>
          <exon e_start="60250" e_stop="60679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCAATTTGATGTCATGGTATGGGGATATGCTTCCTTGGCTTTTCTTTTACTAAGTCCTTCAATTCTAGCTTCCTTTATAAATCTGATATCTAATGGTGTCAGATAAGTTTATCACAAAATGAAGTCTAATGGCGAGTGCTATCAATCTTGTGTAATCATTGAGGAGAGGATGGGCATACTGAGAGCTTGTCCTGTCTGTTGTTTGTGTGTAGTTGGATAATTAGCTTGACTTTTGAAGTTCAAAAATTCCTTGAAGATGCTATGAGACTAGTTCATATGGTACTCGGCTATGGATTAACGACACGCAAATGATATTGGAAAGTGTGTCTTCACAGAGTTGCTTACGTAGTCAAAGGGCCTACCCTTGGCAGCGTGTCTCTAGCATCTACTTTGACCTCTTATTTTGTGTTCTTACTGGTAATGGTTGAGAAAAGTGATGTGATGAAATAACAAAGTCCAAATGACAATGTCAGCAAAAATATTAAGAGTCTTTTTCCTTCTCCTTCTACAACTTGAATAATCTTGCACCTGGGATTTCCGAGCGTCCTCTTTGATTTTCTTGTAAATAATATGAATCAGCGAGCTCGACTACAACAACACCATACCAAAGTAGTCCCACAAAGTAGGGTCTGGGGAGGGGAAGGGGGAGGGTAGAGTGTATGCAAACCTTACCCCTACACTCAGCGGTAGAGAGGGTGTTTCCTATAGACCCGCAGCTCAAGCAAAAACAAATCAAAGCAATCCAGAAAAAGAAGTAATGGATGTGAAAGTATAACAAAGCATGCTGAACAGTAAATACAACAAAATAATACAATTACCGAAGCACAAGAAACTATTAGTATGAATCAGTGAGCTTGATTGGTGGTAAAAAATGCTTGCGTCACTCAGTGCAACTTAAAGGAAAGGGAATTATGTATTGCTATCCCGGCAGCTATTTGGTGGACTACTCGAAGAGGATATTTTTCAACACAAACAAGAGAACGTACATAGTCTTAAATTTAAATGTATTCTTTTTCTTTCTTTTTGTATAAAATGGCAAATATAAATGTTACTTAGAATGTGAGGCCGTGCTTTACTTTGTTTTAACTCCTTACACACTCTGTTTTAACTGACCGAAGCTTGTAACTGGTTCAATGTTCCATCAAGCCTTTGTTGCTTGTCATACATCTATAAAAGCTTACCTTATAAAAATAAGAATATCACTGAGAAAGTATGGATGGAAAAACATTTAAGATTAGCTAAGGCAGGTATCTTCCCCTTGTCTTTCTCATGGTGGGTTTTGTAGATTAAGAGTCATCAGCTTTCCTGCATCGGTCCAGAAGCAAGTTTTAGTGTTCTATTCTGCCTCTTTTTATTAACCCCTTTCCTCATTTTGATACATCGCTGATAAGATTGTTGCTGAAGTACAAGAAATTGCAATTATGTAGGTGACTCCCAACCTCTATGGAAATTTGATTGCAAATACGGCTGCTGGCATAGCTGGTGGCACAGGAGTCATGCCAGGAGGTAAATTTCTGATATATATATATATATATATATATAATTATTTACATCTCTCTATTATGCTAAGTTATTGACTTTGGCTGGCATTAGCTGTCTTTTTTTGGTCTATAGATGACAATTTGATCTTAAGATTTTCACTAGTTAAGATACCCTTCATTTGGTGTCTAATATGTAGCTCACATTTCATCAAACATAATTCTGGTGATCTAAACCTGTTAAACTTTCTGGCAGCTAAATGAGCAAACTCCTTTGTAGTTTGATTTCTTGGTAGCTTAAGTCTAGCTATACTGCAATAAGAATGGAAAATTGATCCAATAAACTCTCTAAATGGACAGAAAAATCATATCTTATAGAACTTGAGGTACTTGAAAAGAAAAAGAAATACAGTGGATGGGCGCATCATCTGTTGGACTTCAGTATAACCAGATTGACATTAGTGCTGCGAAATCAAGGCAGAGGTAGTGGAAATCGTTGCAGATTGAGATTACGACACAGTCATGCCATAGGTTAAGCAGACTCAGATTGCAAATACATAACCTAACTACAAAAAATTCATCGGTCAAGAGTATCAGATTTAGACAATCTTATGCACATTAGGTTAGAACAGAGAAGTCGTCTGCAGAGGTTGATTATCTGAGGGCTAGAGAATAGCTGAAGTCGCACAATATTTAGTAGAGGAGGATATAGAATTTCAATATAAGAAATTTGGTTACACTAGGGATTAGGTCATCTTAACAAATGTTTTTAGTTTGAAAACCGGAGCTCACATAACCTAGCTCTCTCATTTGTTGGAGGTGCAGAGAAGGCTCAGAACATGGGTAACTAAGGTGAACAACACATTTTCACTGTGGATAGTATTAGCATTATCCACATAGTCCTTGTCCTCCAATTTCTGTTACTAACTGTTGTTTCTTGTGCCTCAGTTTTCACATTATTTTGTTGTTCTTTTTTTGTGTGTTTTCATTATTATTTGCTATGTCTTTTTTACTTTGTATTTTCTCTTCGATACCTGTTTGATATGCATTCCTTGAGTTGATGATATTTCAGAAACAACCTCTCTACCTCCATGAGGTAAGGGGGTAAGGTCTTGATATACTTTACCCTCTCCAAGCCCCACTAGTGGGATTTCACTCCTGCATCTCAATTACCTTGTTCTGTGTTGCTTTTTCTCTTCATTTTTCTATTGGATGGATCTTTATGTTTTTCCAAACTTCACTGTTGGCTTACTCAGTTAGCATGTCCAATGTAAATGCAGCTGGTCAATTATTTTTGTGGTTTCAATATCTCTTGAAAGGACTTTGTAAGTTCCAACTTCCCAATGGGGCTGGTGCGGGTGAACCATTGTGATGCTTGACCCAAAGTCTCTACATCGCTTCTTTCCCCCCTCCTCCATGACTGTGAGTAGAAGTGTTGATAAAGAAGCTTCTAGTATAATGATATCCATTTGATTACTGGTTGGTTCCTGAATTGGTTAATGCTCTTTTGCTTATATGGGACAGCTCAGACTAGTTGCTAATACTTAACAAAGTGCAGTAGAACCCTTTTTGTGAGTGCTTGCTTCTTCTCGCGAGGCATCACCAGTATGCTCATCAGTACTTGTTGATAATTTATTTGTTGGAAGAAAGATTAAAGCCTCATCCTTCTCTATTCTACAGATCATTTATAGTGTTTATCAGGGAACACTTAAAGTATTCTCAGCGTTTCCTCCTCAAGTATTAGGCCGTGTATGAGACATAATGTAGGACTGTTGTTCTCTCAGGTAATGTTGGCGCTGATCAAGCAGTTTTTGAGCAAGGTGCTTCCGCTGGGAATGTCGGCAATGAAAAGATATTGAAGCTTAAGAGAGCAAATCCAGTGGCGCTTCTTCTGTCGTCAGCAATGATGCTGAGACATCTTGAATTTCCGTCATATGCTGATCGTTTAGAAACTGCTGTAAGACATGTAATAGAAGAGGGAAAATTCAGGACAAAGGATGTTGGAGGGGATAGCTCTACTCAAGAAGTTGTTGATGCAATTATAGCTGCTTTAGACTAATCGGAATTGACAGTCGTCAAGTTTTTAGGAGAATTATTCACTGTCCAGAGATCTACTTGGCCTATTTTTTGCACAGCTGCAATTTTGTTTTAACTTTCTGAGAATATTTGCTGCTACAATTCTAAATTATCTTTTTTTCATTGGTTAATAATTCA</genome_strand>
        <mrna_strand>GAGCAATTTGATGTCATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACTCCC-ACCTCTATGGAAATTTGATTGCAAATACGGCTGCTGGCATAGCTGGTGGCACAGGAGTCATGCCAGGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGTTGGCGCTGATCAAGCAGTTTTTGAGCAAGGTGCTTCCGCTGGGAATGTCGGCAATGAAAAGATATTGAAGCTTAAGAGAGCAAATCCAGTGGCGCTTCTTCTGTCGTCAGCAATGATGCTGAGACATCTTGAATTTCCGTCATATGCTGATCGTTTAGAAACTGCTGTAAGACATGTAATAGAAGAGGGAAAATTCAGGACAAAGGATGTTGGAGGGGATAGCTCTACTCAAGAAGTTGTTGATGCAATTATAGCTGCTTTAGACTAATCGGAATTGACAGTCGTCAAGTTTTTAGGAGAATTATTCACTGTCCAGAGATCTACTTGGCCTATTTTTTGCACAGCTGCAATTTTGTTTTAACTTTCTGAGAATATTTGCTGCTACAATTCTAAATTATCTTTTTTTCAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E486269" ref_strand="+" ref_description="SGN-E486269 [cSTE-21-L17]">
      <seq>gttaggtccacttgctatatctttactctatattagagtcagacccaatcttgtcgaagttgtgaatttaaatggtttactctgtcatattcatagattttgaaattgtttgtgtaggttgcaacattggctcgaaatgtatatgcaatgcaagagctacattttgcagtaccaatggctggagcagttatttgtacattgaatacccgtcatgattcagctatgttatcagtacttctgaaacattctgaaacaaaggtaatatttgtggatcaacacttgctgcaacttgctcaaggagcattagatattcttgctaatgaaaaagtaacaccacctcttgttgttgtgatatctgaatctgaaaattcttaccctactattgttaattcgaattcttacgaatatgaaagcctcctggaaagtggtaatagcgaattctctgtaaggtggccaacaagtgaatttgatcctattagtgttaactatacttctggaacaacgtcgcgacccaaaggggttgtttacagtcacagaggtgcatatctcaataccattgctacctttctgcttcatgagatgagttcatggcctgtttacctttggaccgtcccaacgtttcactgcaacggatggtgcctgacgtggggtctagcagcacttggtggcaccagcatttgcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="63379" stop="64643"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63686" g_stop="64343" g_length="658"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="684" r_length="658" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E486269" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E486269" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63686" e_stop="64343"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTATCAGAGTCGGATCCAATCTTGTCGATGTAGTGAATTTAAATGGTTTACTCTGTCATTTTCATAGATTTTGAAATTGTTTGTGTAGGTTGCAACATTAGCTCGAAATGTATACGCAATGCAAGAGCTACATTTTGCTGTACCAATGGCTGGAGGAGTTATTTGTACATTGAACACCCGTCATGATTCAGCTATGTTATCAGTACTGCTGAAACATTCTGAAGCAAAGGTAATATTTGTGGATCAACACATGCTGCAACTTGCTCAAGGAGCATTAGATATTCTTGTCAATGAAAAAGTAACACCACCTCTTCTTGTTGTGATCTCTGAATCTGAAAATTCTTATTCTACTATTGTTAATTCGAATTCTTACGAATATGAGAGCCTCCTGGAAAGTGGTAATAGCGAATTCTCTGTAAGGTGGCCAACAAGTGAATTAGATCCTATCAGTGTTAACTATACTTCTGGAACAACGTCGCGACCCAAAGGGGTTGTTTACAGTCACAGGGGTGCATATCTCAATGCCATTGCTACCTTTCTGCTTCATGAGATGAGTTCATGGCCTGTTTACCTTTGGACCGTCCCAACGTTTCACTGCAACGGATGGTGCCTGACTTGGGGTCTAGCAGCACTTGGTGGCACCAGCATTTGCCTC</genome_strand>
        <mrna_strand>TCTATATTAGAGTCAGACCCAATCTTGTCGAAGTTGTGAATTTAAATGGTTTACTCTGTCATATTCATAGATTTTGAAATTGTTTGTGTAGGTTGCAACATTGGCTCGAAATGTATATGCAATGCAAGAGCTACATTTTGCAGTACCAATGGCTGGAGCAGTTATTTGTACATTGAATACCCGTCATGATTCAGCTATGTTATCAGTACTTCTGAAACATTCTGAAACAAAGGTAATATTTGTGGATCAACACTTGCTGCAACTTGCTCAAGGAGCATTAGATATTCTTGCTAATGAAAAAGTAACACCACCTCTTGTTGTTGTGATATCTGAATCTGAAAATTCTTACCCTACTATTGTTAATTCGAATTCTTACGAATATGAAAGCCTCCTGGAAAGTGGTAATAGCGAATTCTCTGTAAGGTGGCCAACAAGTGAATTTGATCCTATTAGTGTTAACTATACTTCTGGAACAACGTCGCGACCCAAAGGGGTTGTTTACAGTCACAGAGGTGCATATCTCAATACCATTGCTACCTTTCTGCTTCATGAGATGAGTTCATGGCCTGTTTACCTTTGGACCGTCCCAACGTTTCACTGCAACGGATGGTGCCTGACGTGGGGTCTAGCAGCACTTGGTGGCACCAGCATTTGCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E486347" ref_strand="+" ref_description="SGN-E486347 [cSTE-21-L18]">
      <seq>gttaggtccacttgctatatctttactctatattagagtcagacccaatcttgtcgaagttgtgaatttaaatggtttactctgtcatattcatagattttgaaattgtttgtgtaggttgcaacattggctcgaaatgtatatgcaatgcaagagctacattttgcagtaccaatggctggagcagttatttgtacattgaatacccgtcatgattcagctatgttatcagtacttctgaaacattctgaaacaaaggtaatatttgtggatcaacacttgctgcaacttgctcaaggagcattagatattcttgctaatgaaaaagtaacaccacctcttgttgttgtgatatctgaatctgaaaattcttaccctactattgttaattcgaattcttacgaatatgaaagcctcctggaaagtggtaatagcgaattctctgtaaggtggccaacaagtgaatttgatcctattagtgttaactatacttctggaacaacgtcgcgacccaaaggggttgtttacagtcacagaggtgcatatctcaataccattgctacctttctgcttcatgagatgagttcatggcctgtttacctttggaccgtcccaacgtttcactgcaacggatggtgcctgacgtggggtctagcagcacttggtggcaccagcatttgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="63379" stop="64642"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63686" g_stop="64342" g_length="657"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="683" r_length="657" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E486347" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E486347" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63686" e_stop="64342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTATCAGAGTCGGATCCAATCTTGTCGATGTAGTGAATTTAAATGGTTTACTCTGTCATTTTCATAGATTTTGAAATTGTTTGTGTAGGTTGCAACATTAGCTCGAAATGTATACGCAATGCAAGAGCTACATTTTGCTGTACCAATGGCTGGAGGAGTTATTTGTACATTGAACACCCGTCATGATTCAGCTATGTTATCAGTACTGCTGAAACATTCTGAAGCAAAGGTAATATTTGTGGATCAACACATGCTGCAACTTGCTCAAGGAGCATTAGATATTCTTGTCAATGAAAAAGTAACACCACCTCTTCTTGTTGTGATCTCTGAATCTGAAAATTCTTATTCTACTATTGTTAATTCGAATTCTTACGAATATGAGAGCCTCCTGGAAAGTGGTAATAGCGAATTCTCTGTAAGGTGGCCAACAAGTGAATTAGATCCTATCAGTGTTAACTATACTTCTGGAACAACGTCGCGACCCAAAGGGGTTGTTTACAGTCACAGGGGTGCATATCTCAATGCCATTGCTACCTTTCTGCTTCATGAGATGAGTTCATGGCCTGTTTACCTTTGGACCGTCCCAACGTTTCACTGCAACGGATGGTGCCTGACTTGGGGTCTAGCAGCACTTGGTGGCACCAGCATTTGCCT</genome_strand>
        <mrna_strand>TCTATATTAGAGTCAGACCCAATCTTGTCGAAGTTGTGAATTTAAATGGTTTACTCTGTCATATTCATAGATTTTGAAATTGTTTGTGTAGGTTGCAACATTGGCTCGAAATGTATATGCAATGCAAGAGCTACATTTTGCAGTACCAATGGCTGGAGCAGTTATTTGTACATTGAATACCCGTCATGATTCAGCTATGTTATCAGTACTTCTGAAACATTCTGAAACAAAGGTAATATTTGTGGATCAACACTTGCTGCAACTTGCTCAAGGAGCATTAGATATTCTTGCTAATGAAAAAGTAACACCACCTCTTGTTGTTGTGATATCTGAATCTGAAAATTCTTACCCTACTATTGTTAATTCGAATTCTTACGAATATGAAAGCCTCCTGGAAAGTGGTAATAGCGAATTCTCTGTAAGGTGGCCAACAAGTGAATTTGATCCTATTAGTGTTAACTATACTTCTGGAACAACGTCGCGACCCAAAGGGGTTGTTTACAGTCACAGAGGTGCATATCTCAATACCATTGCTACCTTTCTGCTTCATGAGATGAGTTCATGGCCTGTTTACCTTTGGACCGTCCCAACGTTTCACTGCAACGGATGGTGCCTGACGTGGGGTCTAGCAGCACTTGGTGGCACCAGCATTTGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E555097" ref_strand="+" ref_description="SGN-E555097 [cTSC-6-G20]">
      <seq>gagtacatcacttatatggactaacagagacatatggtccaggtacatataatttgtggaggcctgagtgggattctttaccaccaaacgaaaagtacaaactgaaagcaagacaaggggtgcaacatctttgttcagaggcagtggatgtgatggaccctcttacaatggagaaagtaccagaagatggtaaaacaataggtgaaattatgtttagagggaatacagtaatgagtgaatatctgaaagatgaagaagcaacaaaagaagcttttaaaggtggatggtttcatagtggtgatttggctgtgaaacatccagacggatacatagaagttaaggacagattgaaagatatcgtaatctctggtggagaaaacataagcacaatagaggtggaaagagttttgtatagtcatccagcagtttttgaaacagcagtggttgcgcgaccagataatcactgggggcaaacaccttgtgcatttgtgaagttgaaggatggttcaaatgttagtgagcaagaaattatcaacttctgcagggataacttgcctcattacatggcacctcgaacagtcatatttcaacatctccctaaaacttcaacaggcaaaatacaaaaattcattctaagagagaaagccagagccttgggaagtctttgctgaaggaaatccgtttttcttgctgtccgattctctttcttctaattttctacaactgaaagacttctatctatgctgtaatctgtttttcttaccttttaaagattgaagtctcctcaaaaggtgtatgctaatgatctctatgttgtacaagctggacatggtgtatctctttgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="64246" stop="65692"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64546" g_stop="65392" g_length="847"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="847" r_length="847" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E555097" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>847</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E555097" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64546" e_stop="65392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTACATCACTTATATGGACTAACAGAGACATATGGTCCAGGTACATATAATTTGTGGAGGCCTGAGTGGGATTCTTTACCACCAAACGAAAAGTACAAACTGAAAGCAAGACAAGGGGTGCAACATCTTTGTTCAGAGGCAGTGGATGTGATGGACCCTCTTACAATGGAGAAAGTACCAGAAGATGGTAAAACAATAGGTGAAATTATGTTTAGAGGGAATACAGTAATGAGTGAATATCTGAAAGATGAAGAAGCAACAAAAGAAGCTTTTAAAGGTGGATGGTTTCATAGTGGTGATTTGGCTGTGAAACATCCAGACGGATACATAGAAGTTAAGGACAGATTGAAAGATATCGTAATCTCTGGTGGAGAAAACATAAGCACAATAGAGGTGGAAAGAGTTTTGTATAGTCATCCAGCAGTTTTTGAAACAGCAGTGGTTGCGCGACCAGATAATCACTGGGGGCAAACACCTTGTGCATTTGTGAAGTTGAAGGATGGTTCAAATGTTAGTGAGCAAGAAATTATCAACTTCTGCAGGGATAACTTGCCTCATTACATGGCACCTCGAACAGTCATATTTCAACATCTCCCTAAAACTTCAACAGGCAAAATACAAAAATTCATTCTAAGAGAGAAAGCCAGAGCCTTGGGAAGTCTTTGCTGAAGGAAATCCGTTTTTCTTGCTGTCCGATTCTCTTTCTTCTAATTTTCTACAACTGAAAGACTTCTATCTATGCTGTAATCTGTTTTTCTTACCTTTTAAAGATTGAAGTCTCCTCAAAAGGTGTATGCTAATGATCTCTATGTTGTACAAGCTGGACATGGTGTATCTCTTTGCTA</genome_strand>
        <mrna_strand>GAGTACATCACTTATATGGACTAACAGAGACATATGGTCCAGGTACATATAATTTGTGGAGGCCTGAGTGGGATTCTTTACCACCAAACGAAAAGTACAAACTGAAAGCAAGACAAGGGGTGCAACATCTTTGTTCAGAGGCAGTGGATGTGATGGACCCTCTTACAATGGAGAAAGTACCAGAAGATGGTAAAACAATAGGTGAAATTATGTTTAGAGGGAATACAGTAATGAGTGAATATCTGAAAGATGAAGAAGCAACAAAAGAAGCTTTTAAAGGTGGATGGTTTCATAGTGGTGATTTGGCTGTGAAACATCCAGACGGATACATAGAAGTTAAGGACAGATTGAAAGATATCGTAATCTCTGGTGGAGAAAACATAAGCACAATAGAGGTGGAAAGAGTTTTGTATAGTCATCCAGCAGTTTTTGAAACAGCAGTGGTTGCGCGACCAGATAATCACTGGGGGCAAACACCTTGTGCATTTGTGAAGTTGAAGGATGGTTCAAATGTTAGTGAGCAAGAAATTATCAACTTCTGCAGGGATAACTTGCCTCATTACATGGCACCTCGAACAGTCATATTTCAACATCTCCCTAAAACTTCAACAGGCAAAATACAAAAATTCATTCTAAGAGAGAAAGCCAGAGCCTTGGGAAGTCTTTGCTGAAGGAAATCCGTTTTTCTTGCTGTCCGATTCTCTTTCTTCTAATTTTCTACAACTGAAAGACTTCTATCTATGCTGTAATCTGTTTTTCTTACCTTTTAAAGATTGAAGTCTCCTCAAAAGGTGTATGCTAATGATCTCTATGTTGTACAAGCTGGACATGGTGTATCTCTTTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E307495" ref_strand="+" ref_description="SGN-E307495 [cLEY-12-P4]">
      <seq>atgaatccttttttcaatatttcaagattgaatgggttgttacatgctctaaacagagttcgagttcaccccattttgagtcagaggtctcgttatttgtcccaaattattcatgagaatgttgaaactcacccatgggaatccatggagggactaatgaggtgttcagctaattatttccctttaacacccattagtttcttggacagagctgctaaggtttttagagacaggacttctgttgtgtatggttcttctgttaaattcacttgggaagagactcataatagatgtctaaagatggcttctgctctgtctcagttgggtatttctcgtggtgatgttgttgcaacgctggctcctaatgtacccgcagtgcaagagttgcattttgcggttccaatggcaggagcagtgctttgtacgttgaatacacgtcatgattcagctatggtatctgttctcctgaggcattcagaagctaagatcattttcgttgacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="70459" stop="71732"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70759" g_stop="71103" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71104" i_stop="71275" i_length="172">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71276" g_stop="71432" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="502" r_length="157" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E307495" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70759" e_stop="71103"/>
          <exon e_start="71276" e_stop="71432"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATCCTTTTTTCAATATTTCAAGATTGAATGGGTTGTTACATGCTCTAAACAGAGTTCGAGTTCACCCCATTTTGAGTCAGAGGTCTCGTTATTTGTCCCAAATTATTCATGAGAATGTTGAAACTCACCCATGGGAATCCATGGAGGGACTAATGAGGTGTTCAGCTAATTATTTCCCTTTAACACCCATTAGTTTCTTGGACAGAGCTGCTAAGGTTTTTAGAGACAGGACTTCTGTTGTGTATGGTTCTTCTGTTAAATTCACTTGGGAAGAGACTCATAATAGATGTCTAAAGATGGCTTCTGCTCTGTCTCAGTTGGGTATTTCTCGTGGTGATGTTGTAAGTTCGATTTCTCCGCTTTAGAATATTACGTCTAAATGAATGGTTAATAGTATATGGCTAAACTTTTTCATCTTTGGAATAAACTTCTACTAACATTTTAGTTTGATCACATATGAAAAGTTTTTAAATCTGTGATGTCTCATGGTTGTTAGTGTAAATGCTTGAATAGGTTGCAACGCTGGCTCCTAATGTACCCGCAGTGCAAGAGTTGCATTTTGCGGTTCCAATGGCAGGAGCAGTGCTTTGTACGTTGAATACACGTCATGATTCAGCTATGGTATCTGTTCTCCTGAGGCATTCAGAAGCTAAGATCATTTTCGTTGACC</genome_strand>
        <mrna_strand>ATGAATCCTTTTTTCAATATTTCAAGATTGAATGGGTTGTTACATGCTCTAAACAGAGTTCGAGTTCACCCCATTTTGAGTCAGAGGTCTCGTTATTTGTCCCAAATTATTCATGAGAATGTTGAAACTCACCCATGGGAATCCATGGAGGGACTAATGAGGTGTTCAGCTAATTATTTCCCTTTAACACCCATTAGTTTCTTGGACAGAGCTGCTAAGGTTTTTAGAGACAGGACTTCTGTTGTGTATGGTTCTTCTGTTAAATTCACTTGGGAAGAGACTCATAATAGATGTCTAAAGATGGCTTCTGCTCTGTCTCAGTTGGGTATTTCTCGTGGTGATGTT............................................................................................................................................................................GTTGCAACGCTGGCTCCTAATGTACCCGCAGTGCAAGAGTTGCATTTTGCGGTTCCAATGGCAGGAGCAGTGCTTTGTACGTTGAATACACGTCATGATTCAGCTATGGTATCTGTTCTCCTGAGGCATTCAGAAGCTAAGATCATTTTCGTTGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E299936" ref_strand="+" ref_description="SGN-E299936 [cLEW-11-G5]">
      <seq>ttgtgtatggttcttctgttaaattcacttgggaagagactcataatagatgtctaaagatggcttctgctctgtctcagttgggtatttctcgtggtgatgttgtaagttcgatttctccgctttagaatattacgtctaaatgaatggttaatagtatatggctaaactttttcatctttggaataaacttctactaacattttagtttgatcacatatgaaaagtttttaaatctgtgatgtctcatggttgttagtgtaaatgcttgaataggttgcaacgctggctcctaatgtacccgcagtgcaagagttgcattttgcggttccaatggcaggagcagtgctttgtacgttgaatacacgtcatgattcagctatggtatctgttctcctgaggcattcagaagctaagatcattttcgttgaccagcagttgtttgatgttgctcaaagagcactggatcttcttgcagatgctaaaacaaaacctcttctaatattaatccctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="70700" stop="71813"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71000" g_stop="71513" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="514" r_length="514" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E299936" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71000" e_stop="71513"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGTATGGTTCTTCTGTTAAATTCACTTGGGAAGAGACTCATAATAGATGTCTAAAGATGGCTTCTGCTCTGTCTCAGTTGGGTATTTCTCGTGGTGATGTTGTAAGTTCGATTTCTCCGCTTTAGAATATTACGTCTAAATGAATGGTTAATAGTATATGGCTAAACTTTTTCATCTTTGGAATAAACTTCTACTAACATTTTAGTTTGATCACATATGAAAAGTTTTTAAATCTGTGATGTCTCATGGTTGTTAGTGTAAATGCTTGAATAGGTTGCAACGCTGGCTCCTAATGTACCCGCAGTGCAAGAGTTGCATTTTGCGGTTCCAATGGCAGGAGCAGTGCTTTGTACGTTGAATACACGTCATGATTCAGCTATGGTATCTGTTCTCCTGAGGCATTCAGAAGCTAAGATCATTTTCGTTGACCAGCAGTTGTTTGATGTTGCTCAAGGAGCACTGGATCTTCTTGCAGATGCTAAAACAAAACCTCTTCTAATATTAATCCCTG</genome_strand>
        <mrna_strand>TTGTGTATGGTTCTTCTGTTAAATTCACTTGGGAAGAGACTCATAATAGATGTCTAAAGATGGCTTCTGCTCTGTCTCAGTTGGGTATTTCTCGTGGTGATGTTGTAAGTTCGATTTCTCCGCTTTAGAATATTACGTCTAAATGAATGGTTAATAGTATATGGCTAAACTTTTTCATCTTTGGAATAAACTTCTACTAACATTTTAGTTTGATCACATATGAAAAGTTTTTAAATCTGTGATGTCTCATGGTTGTTAGTGTAAATGCTTGAATAGGTTGCAACGCTGGCTCCTAATGTACCCGCAGTGCAAGAGTTGCATTTTGCGGTTCCAATGGCAGGAGCAGTGCTTTGTACGTTGAATACACGTCATGATTCAGCTATGGTATCTGTTCTCCTGAGGCATTCAGAAGCTAAGATCATTTTCGTTGACCAGCAGTTGTTTGATGTTGCTCAAAGAGCACTGGATCTTCTTGCAGATGCTAAAACAAAACCTCTTCTAATATTAATCCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E301628" ref_strand="-" ref_description="SGN-E301628 [cLEW-23-I5]">
      <seq>aagataatggctataatggtgaaatatgttggacaaccaaagacagagaaaaatggtggtgttttatctgttgatttacaaggaaatccactggaacactattatgatgaggatttgacaatggtgtcaagtggcattaagattggtgatcatttgtactgtggctctgttaagtctccgtatatactacgcctcaatctcaaacaatatcctgccgtttaaacttcataaacaaaaatgtaagtgtttgatttcaaaaaataatgggtgtatttgttagtacaagtatattcgttcaattttgcataagatttccactatataagatgtgtaagtgttttctttttaatttattataaataataataagagtcagcatatgcacctcaaaaaaaaaaaaaaaaaaaaaaaaactcagactagttgtctctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="-" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="75623" stop="26410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75323" g_stop="74934" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="390" r_length="390" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74933" i_stop="74268" i_length="666">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.374" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74267" g_stop="74234" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="423" r_length="33" r_score="0.529"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74233" i_stop="74012" i_length="222">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.661" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74011" g_stop="74002" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="433" r_length="10" r_score="0.800"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="-" ref_id="SGN-E301628" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301628" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="75323" e_stop="74934"/>
          <exon e_start="74267" e_stop="74234"/>
          <exon e_start="74011" e_stop="74002"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATAATGGCTATAATGGTGAAATATGTTGGACAACCAAAGACAGAGAAAAATGGTGGTGTTTTATCTGTTGATTTACAAGGAAATCCACTGGAACACTATTATGATGAGGATTTGACAATGGTGTCAAGTGGCATTAAGATTGGTGATCATTTGTACTGTGGCTCTGTTAAGTCTCCGTATATACTACGCCTCAATCTCAAACAATATCCTGCCGTTTAAACTTCATAAACAAAAATGTAAGTGTTTGATTTCAAAAAATAATGGGTGTATTTGTTAGTACAAGTATATTCGTTCAATTTTGCATAAGATTTCCACTATATAAGATGTGTAAGTGTTTTCTTTTTAATTTATTATAAATAATAATAAGAGTCAGCATATGCAACTAAATCATGATCTTCTTTTTGTATGTATTTAATTCTATGAAATTTAATAGGATAAACATTTTTATTGAAATTCTTTTTTACACCTTTGGTAAAAAAATAAATCAATCAATATTTTTAAAAATATTATAAATTAATATACTACTAAGTATTACAAATGATTTATTACATTTAAACATGTAAATTGTACAATCTACTTTGCTACTTACAAATTATGTTAAATCTACTTAGGTTAAATAAATTATATCCTCTCATTAACAAGTTTCAGCATGGAATAAATGGACTGCACATATTCAAATTTACCTCTCCATTTTAACTATATTTTAAAATTAATTTGAACTCCATAAAGGGCAAAAACAAAATATTTTCCTAATGACCAAGTGACATATTAAAGCAAGAGTTTAACAAATAACAAAATTGTTAAATTTCAGATCATACGGCGCCAAATTTGATTTTTTTTCCTTTTTTAACCGAAGGATTAGCAAATCTTTGAGAACTGATTTTTCATATTGTTTTTAACTAATTAATAGTTTTTTTCTTTGTCTCGATTTATTATGACAAGCTTGAAATCTTAAACTTTTTAAAATAAAATTTATATATTTAAAAATTAAAATATAAATTAAAAACTACTATAAATGACAGACAATATAAAAGATATAAAAAAAAATTGCAGGAAAAAATAGATTTATTTAAATATCAAAACTTGAATATCCGTAAAGATGTAATATTTCTCTATTATTATTATCTCTGAAAATCTAGTTTCCTTAACCATGTAGGGATGCTATAACCGAGTTCAGCTTGTAGTGGGAAAACCTCATTAACCTAATCTAAGTAATTTAAACCTACATTAATCCCTTCTTATTAAAGTTTGTTTTTGTTCTTGTCTAATTTTATCTTCCTTCTTGCTCTACTGTAATTTTCTGCAAAAGATGTCTCTCC</genome_strand>
        <mrna_strand>AAGATAATGGCTATAATGGTGAAATATGTTGGACAACCAAAGACAGAGAAAAATGGTGGTGTTTTATCTGTTGATTTACAAGGAAATCCACTGGAACACTATTATGATGAGGATTTGACAATGGTGTCAAGTGGCATTAAGATTGGTGATCATTTGTACTGTGGCTCTGTTAAGTCTCCGTATATACTACGCCTCAATCTCAAACAATATCCTGCCGTTTAAACTTCATAAACAAAAATGTAAGTGTTTGATTTCAAAAAATAATGGGTGTATTTGTTAGTACAAGTATATTCGTTCAATTTTGCATAAGATTTCCACTATATAAGATGTGTAAGTGTTTTCTTTTTAATTTATTATAAATAATAATAAGAGTCAGCATATGCACCTCAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAACTCAGACTAG-..............................................................................................................................................................................................................................TTGTCTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E304314" ref_strand="-" ref_description="SGN-E304314 [cLEX-12-O9]">
      <seq>cagatcaaaattatgttatcttctgtgaaactcctctgaggaaatgcaaaaagtatcatataaaaggcgaaaaaaaaggatccgtggatatgtttgttgataatttacctggatttcctgacaacattcgttacgatggtgaagggcattattggattgcatttgcctcggaaaacacatattcatgggacttgaccctaaagtacccattcatcagaaagataatggctataatggtgaaatatgttggacaaccaaagacagagaaaaatggtggtgttttatctgttgattcacaaggaaatccactggaacactattatgatgaggatttgacaatggtgtcaagtggcattaagattggtgatcatttgtactgtggctctgttaagtctccgtatatactacgcctcaatctcaaacaatatcctgccgtttaaacttcataaacaaaaatgtaagtgtttgatttcaaaaaataatgggtgtatttgttagtacaagtatattcgttcaattttgcataagatttccactatataagatgtgtaagtgttttctttttaatttattataaataataataagagtcacaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="-" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="76001" stop="43184"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75701" g_stop="75665" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75664" i_stop="75589" i_length="76">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75588" g_stop="75456" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="170" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75455" i_stop="75372" i_length="84">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75371" g_stop="74930" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="612" r_length="442" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="-" ref_id="SGN-E304314" ref_strand="-">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304314" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="75701" e_stop="75665"/>
          <exon e_start="75588" e_stop="75456"/>
          <exon e_start="75371" e_stop="74930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATCAAAATTATGTTATCTTCTGTGAAACTCCTCTGTAAGTACTCTTCATATTTTTAATTTACTCAGCAGATATGTAGAAAAATACTTCTCATTTGCCATCTTTTTTTTAGGAGGAAATGCAAAAAGTATCATATAAAAGGCGAAAAAAAAGGATCCGTGGATATGTTTGTTGATAATTTACCTGGATTTCCTGACAACATTCGTTACGATGGTGAAGGGCATTATTGGATTGCATTTGCCTCGGTTAGTTTCTTCATAACATTTAAATTTAATGTGTTCAACAGGGTACACTGCTCTCTCATATTTTGTTTCTGATAACTTGAACAGGAAAACACATATTCATGGGACTTGACCCTAAAGTACCCATTCATCAGAAAGATAATGGCTATAATGGTGAAATATGTTGGACAACCAAAGACAGAGAAAAATGGTGGTGTTTTATCTGTTGATTTACAAGGAAATCCACTGGAACACTATTATGATGAGGATTTGACAATGGTGTCAAGTGGCATTAAGATTGGTGATCATTTGTACTGTGGCTCTGTTAAGTCTCCGTATATACTACGCCTCAATCTCAAACAATATCCTGCCGTTTAAACTTCATAAACAAAAATGTAAGTGTTTGATTTCAAAAAATAATGGGTGTATTTGTTAGTACAAGTATATTCGTTCAATTTTGCATAAGATTTCCACTATATAAGATGTGTAAGTGTTTTCTTTTTAATTTATTATAAATAATAATAAGAGTCAGCATATGCAACTAAATCAT</genome_strand>
        <mrna_strand>CAGATCAAAATTATGTTATCTTCTGTGAAACTCCTCT............................................................................GAGGAAATGCAAAAAGTATCATATAAAAGGCGAAAAAAAAGGATCCGTGGATATGTTTGTTGATAATTTACCTGGATTTCCTGACAACATTCGTTACGATGGTGAAGGGCATTATTGGATTGCATTTGCCTCG....................................................................................GAAAACACATATTCATGGGACTTGACCCTAAAGTACCCATTCATCAGAAAGATAATGGCTATAATGGTGAAATATGTTGGACAACCAAAGACAGAGAAAAATGGTGGTGTTTTATCTGTTGATTCACAAGGAAATCCACTGGAACACTATTATGATGAGGATTTGACAATGGTGTCAAGTGGCATTAAGATTGGTGATCATTTGTACTGTGGCTCTGTTAAGTCTCCGTATATACTACGCCTCAATCTCAAACAATATCCTGCCGTTTAAACTTCATAAACAAAAATGTAAGTGTTTGATTTCAAAAAATAATGGGTGTATTTGTTAGTACAAGTATATTCGTTCAATTTTGCATAAGATTTCCACTATATAAGATGTGTAAGTGTTTTCTTTTTAATTTATTATAAATAATAATAAGAGTCACAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E351756" ref_strand="+" ref_description="SGN-E351756 [cTOS-8-D22]">
      <seq>tgaaattggcagacgctgtagacgttgcagaggatggaattatatatttctccgatgcttcttacaaatataatatcgaacaatacatttatgattttcttgaaggaagaccccatggaagattgttaagttatgatccatcaactaaacagactaaaacgctacttagcaacctgcattttgctaatggcgttgcagtctctccagatcaaaattatgttatcttctgtgaaactcctctgaggaaatgcaaaaagtatcatataaaaggcgaaaaaaaaggatccgtggatatgtttgttgataatttacctggatttcctgacaacattcgttacgatggtgaagggcattattggattgcatttgcctcggaaaacacatattcatgggacttgaccctaaagtacccattcatcagaaagataatggctataatggtgaaatatgttggacaaccaaagacagagaaaaatggtggtgttttatctgttgatttacaaggaaatccactggaacactattatgatgaggatttgacaatggtgtcaagtggcattaagattggtgatcatttgtactgtggctctgttaagtctccgtatatactacgcctcaatctcaaacaatatcctgccgtttaaacttcataaacaaaaatgtaagtgtttgatttcaaaaataatgggtgtatttgttagtacaagtatattcgttcaattttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="-" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="76205" stop="74718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75905" g_stop="75665" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75664" i_stop="75589" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75588" g_stop="75456" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="374" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75455" i_stop="75372" i_length="84">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75371" g_stop="75018" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="727" r_length="353" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="-" ref_id="SGN-E351756" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351756" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75905" e_stop="75665"/>
          <exon e_start="75588" e_stop="75456"/>
          <exon e_start="75371" e_stop="75018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAATTGGCAGACGCTGTAGACGTTGCAGAGGATGGAATTATATATTTCTCCGATGCTTCTTACAAATATAATATCGAACAATACATTTATGATTTTCTTGAAGGAAGACCCCATGGAAGATTGTTAAGTTATGATCCATCAACTAAACAGACTAAAACGCTACTTAGCAACCTGCATTTTGCTAATGGCGTTGCAGTCTCTCCAGATCAAAATTATGTTATCTTCTGTGAAACTCCTCTGTAAGTACTCTTCATATTTTTAATTTACTCAGCAGATATGTAGAAAAATACTTCTCATTTGCCATCTTTTTTTTAGGAGGAAATGCAAAAAGTATCATATAAAAGGCGAAAAAAAAGGATCCGTGGATATGTTTGTTGATAATTTACCTGGATTTCCTGACAACATTCGTTACGATGGTGAAGGGCATTATTGGATTGCATTTGCCTCGGTTAGTTTCTTCATAACATTTAAATTTAATGTGTTCAACAGGGTACACTGCTCTCTCATATTTTGTTTCTGATAACTTGAACAGGAAAACACATATTCATGGGACTTGACCCTAAAGTACCCATTCATCAGAAAGATAATGGCTATAATGGTGAAATATGTTGGACAACCAAAGACAGAGAAAAATGGTGGTGTTTTATCTGTTGATTTACAAGGAAATCCACTGGAACACTATTATGATGAGGATTTGACAATGGTGTCAAGTGGCATTAAGATTGGTGATCATTTGTACTGTGGCTCTGTTAAGTCTCCGTATATACTACGCCTCAATCTCAAACAATATCCTGCCGTTTAAACTTCATAAACAAAAATGTAAGTGTTTGATTTCAAAAAATAATGGGTGTATTTGTTAGTACAAGTATATTCGTTCAATTTTGCA</genome_strand>
        <mrna_strand>TGAAATTGGCAGACGCTGTAGACGTTGCAGAGGATGGAATTATATATTTCTCCGATGCTTCTTACAAATATAATATCGAACAATACATTTATGATTTTCTTGAAGGAAGACCCCATGGAAGATTGTTAAGTTATGATCCATCAACTAAACAGACTAAAACGCTACTTAGCAACCTGCATTTTGCTAATGGCGTTGCAGTCTCTCCAGATCAAAATTATGTTATCTTCTGTGAAACTCCTCT............................................................................GAGGAAATGCAAAAAGTATCATATAAAAGGCGAAAAAAAAGGATCCGTGGATATGTTTGTTGATAATTTACCTGGATTTCCTGACAACATTCGTTACGATGGTGAAGGGCATTATTGGATTGCATTTGCCTCG....................................................................................GAAAACACATATTCATGGGACTTGACCCTAAAGTACCCATTCATCAGAAAGATAATGGCTATAATGGTGAAATATGTTGGACAACCAAAGACAGAGAAAAATGGTGGTGTTTTATCTGTTGATTTACAAGGAAATCCACTGGAACACTATTATGATGAGGATTTGACAATGGTGTCAAGTGGCATTAAGATTGGTGATCATTTGTACTGTGGCTCTGTTAAGTCTCCGTATATACTACGCCTCAATCTCAAACAATATCCTGCCGTTTAAACTTCATAAACAAAAATGTAAGTGTTTGATTTC-AAAAATAATGGGTGTATTTGTTAGTACAAGTATATTCGTTCAATTTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E350675" ref_strand="+" ref_description="SGN-E350675 [cTOS-7-A22]">
      <seq>ggattattactcaacgttacttctgagggtgaaattaaagtgctaacagaggaagctgaaggcctgaaattgaaattggcagacgctgtagacgttgcagaggatggaattatatatttctccgatgcttcttacaaatataatatcgaacaatacatttatgattttcttgaaggaagaccccatggaagattgttaagttatgatccatcaactaaacagactaaaacgctacttagcaacctgcattttgctaatggcgttgcagtctctccagatcaaaattatgttatcttctgtgaaactcctctgaggaaatgcaaaaagtatcatataaaaggcgaaaaaaaaggatccgtggatatgtttgttgataatttacctggatttcctgacaacattcgttacgatggtgaagggcattattggattgcatttgcctcggaaaacacatattcatgggacttgaccctaaagtacccattcatcagaaagataatggctataatggtgaaatatgttggacaaccaaagacagagaaaaatggtggtgttttatctgttgatttacaaggaaatccactggaacactattatgatgaggattttgacatggtgtcaagtggcatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="-" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="76275" stop="74885"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75975" g_stop="75665" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75664" i_stop="75589" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75588" g_stop="75456" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="444" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75455" i_stop="75372" i_length="84">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75371" g_stop="75185" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="631" r_length="187" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="-" ref_id="SGN-E350675" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350675" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75975" e_stop="75665"/>
          <exon e_start="75588" e_stop="75456"/>
          <exon e_start="75371" e_stop="75185"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATTATTACTCAACGTTACTTCTGAGGGTGAAATTAAAGTGCTAACAGAGGAAGCTGAAGGCCTGAAATTGAAATTGGCAGACGCTGTAGACGTTGCAGAGGATGGAATTATATATTTCTCCGATGCTTCTTACAAATATAATATCGAACAATACATTTATGATTTTCTTGAAGGAAGACCCCATGGAAGATTGTTAAGTTATGATCCATCAACTAAACAGACTAAAACGCTACTTAGCAACCTGCATTTTGCTAATGGCGTTGCAGTCTCTCCAGATCAAAATTATGTTATCTTCTGTGAAACTCCTCTGTAAGTACTCTTCATATTTTTAATTTACTCAGCAGATATGTAGAAAAATACTTCTCATTTGCCATCTTTTTTTTAGGAGGAAATGCAAAAAGTATCATATAAAAGGCGAAAAAAAAGGATCCGTGGATATGTTTGTTGATAATTTACCTGGATTTCCTGACAACATTCGTTACGATGGTGAAGGGCATTATTGGATTGCATTTGCCTCGGTTAGTTTCTTCATAACATTTAAATTTAATGTGTTCAACAGGGTACACTGCTCTCTCATATTTTGTTTCTGATAACTTGAACAGGAAAACACATATTCATGGGACTTGACCCTAAAGTACCCATTCATCAGAAAGATAATGGCTATAATGGTGAAATATGTTGGACAACCAAAGACAGAGAAAAATGGTGGTGTTTTATCTGTTGATTTACAAGGAAATCCACTGGAACACTATTATGATGAGGATTTGACAATGGTGTCAAGTGGCATTA</genome_strand>
        <mrna_strand>GGATTATTACTCAACGTTACTTCTGAGGGTGAAATTAAAGTGCTAACAGAGGAAGCTGAAGGCCTGAAATTGAAATTGGCAGACGCTGTAGACGTTGCAGAGGATGGAATTATATATTTCTCCGATGCTTCTTACAAATATAATATCGAACAATACATTTATGATTTTCTTGAAGGAAGACCCCATGGAAGATTGTTAAGTTATGATCCATCAACTAAACAGACTAAAACGCTACTTAGCAACCTGCATTTTGCTAATGGCGTTGCAGTCTCTCCAGATCAAAATTATGTTATCTTCTGTGAAACTCCTCT............................................................................GAGGAAATGCAAAAAGTATCATATAAAAGGCGAAAAAAAAGGATCCGTGGATATGTTTGTTGATAATTTACCTGGATTTCCTGACAACATTCGTTACGATGGTGAAGGGCATTATTGGATTGCATTTGCCTCG....................................................................................GAAAACACATATTCATGGGACTTGACCCTAAAGTACCCATTCATCAGAAAGATAATGGCTATAATGGTGAAATATGTTGGACAACCAAAGACAGAGAAAAATGGTGGTGTTTTATCTGTTGATTTACAAGGAAATCCACTGGAACACTATTATGATGAGGATTTTGACATGGTGTCAAGTGGCATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E689649" ref_strand="+" ref_description="SGN-E689649 [LH_Ea01H07]">
      <seq>ccgttgttacttctgagggtgaaattaaagtgctaacagaggaagctgaaggcctgaaattgaaattggcagacgctgtagacgttgcagaggatggaattatatatttctccgatgcttcttacaaatataacatcgaacaatacatttatgattttcttgaaggaagaccccatggaagattgttaagttatgatccatcaactaaacagaccaaaacgctacttagcaatctgcattttgctaatggcgttgcagtctctcctgatcaaaattatgttatcttctgtgaaactcctctgaggaaatgcaaaaagtatcatataaaaggcgaaaaaaaaggatccgtcgatatgtttgttgataatttacctggatttcctgacaacattcgttacgatggtgaagggcattattggattgcatttgcctcggttagtttcttcataacatttaaatttgatgtgttcaatctttagggtacaccgctctctcatattttgtttctgataacttgaacaggaaaacacatattcatgggacttggcactaaagtacccattcatcagaaagataatggctataatggtgaaatatgttggacaaccaaaggcagagaaaaatggtggtgttttatctgctgatttacaaggaaatccactggaacactattatgatgaggatttgacaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="-" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="76260" stop="74901"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75965" g_stop="75665" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75664" i_stop="75589" i_length="76">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75588" g_stop="75201" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="693" r_length="392" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="-" ref_id="SGN-E689649" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689649" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75965" e_stop="75665"/>
          <exon e_start="75588" e_stop="75201"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACGTTACTTCTGAGGGTGAAATTAAAGTGCTAACAGAGGAAGCTGAAGGCCTGAAATTGAAATTGGCAGACGCTGTAGACGTTGCAGAGGATGGAATTATATATTTCTCCGATGCTTCTTACAAATATAATATCGAACAATACATTTATGATTTTCTTGAAGGAAGACCCCATGGAAGATTGTTAAGTTATGATCCATCAACTAAACAGACTAAAACGCTACTTAGCAACCTGCATTTTGCTAATGGCGTTGCAGTCTCTCCAGATCAAAATTATGTTATCTTCTGTGAAACTCCTCTGTAAGTACTCTTCATATTTTTAATTTACTCAGCAGATATGTAGAAAAATACTTCTCATTTGCCATCTTTTTTTTAGGAGGAAATGCAAAAAGTATCATATAAAAGGCGAAAAAAAAGGATCCGTGGATATGTTTGTTGATAATTTACCTGGATTTCCTGACAACATTCGTTACGATGGTGAAGGGCATTATTGGATTGCATTTGCCTCGGTTAGTTTCTTCATAACATTTAAATTTAATGTGTTCAA-C---AGGGTACACTGCTCTCTCATATTTTGTTTCTGATAACTTGAACAGGAAAACACATATTCATGGGACTTGACCCTAAAGTACCCATTCATCAGAAAGATAATGGCTATAATGGTGAAATATGTTGGACAACCAAAGACAGAGAAAAATGGTGGTGTTTTATCTGTTGATTTACAAGGAAATCCACTGGAACACTATTATGATGAGGATTTGACAATG</genome_strand>
        <mrna_strand>CCGTTGTTACTTCTGAGGGTGAAATTAAAGTGCTAACAGAGGAAGCTGAAGGCCTGAAATTGAAATTGGCAGACGCTGTAGACGTTGCAGAGGATGGAATTATATATTTCTCCGATGCTTCTTACAAATATAACATCGAACAATACATTTATGATTTTCTTGAAGGAAGACCCCATGGAAGATTGTTAAGTTATGATCCATCAACTAAACAGACCAAAACGCTACTTAGCAATCTGCATTTTGCTAATGGCGTTGCAGTCTCTCCTGATCAAAATTATGTTATCTTCTGTGAAACTCCTCT............................................................................GAGGAAATGCAAAAAGTATCATATAAAAGGCGAAAAAAAAGGATCCGTCGATATGTTTGTTGATAATTTACCTGGATTTCCTGACAACATTCGTTACGATGGTGAAGGGCATTATTGGATTGCATTTGCCTCGGTTAGTTTCTTCATAACATTTAAATTTGATGTGTTCAATCTTTAGGGTACACCGCTCTCTCATATTTTGTTTCTGATAACTTGAACAGGAAAACACATATTCATGGGACTTGGCACTAAAGTACCCATTCATCAGAAAGATAATGGCTATAATGGTGAAATATGTTGGACAACCAAAGGCAGAGAAAAATGGTGGTGTTTTATCTGCTGATTTACAAGGAAATCCACTGGAACACTATTATGATGAGGATTTGACAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E354162" ref_strand="+" ref_description="SGN-E354162 [cTOS-16-A9]">
      <seq>ggattattactcaacgttacttctgagggtgaaattaaagtgctaacagaggaagctgaaggcctgaaattgaaattggcagacgctgtagacgttgcagaggatggaattatatatttctccgatgcttcttacaaatataatatcgaacaatacatttatgattttcttgaaggaagaccccatggaagattgttaagttatgatccatcaactaaacagactaaaacgctacttagcaacctgcattttgctaatggcgttgcagtctctccagatcaaaattatgttatcttctgtgaaactcctctgaggaaatgcaaaaagtatcatataaaaggcgaaaaaaaaggatccgtggatatgtttgttgataatttacctggatttcctggacacattcgttacgatggtgaaaggcattattggattgcatttgcctcggaaaacacatattcatggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="-" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="76275" stop="75052"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75975" g_stop="75665" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75664" i_stop="75589" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75588" g_stop="75456" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="444" r_length="133" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75455" i_stop="75372" i_length="84">
            <donor d_prob="0.982" d_score="0.92"/>
            <acceptor a_prob="0.982" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75371" g_stop="75352" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="464" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="-" ref_id="SGN-E354162" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354162" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75975" e_stop="75665"/>
          <exon e_start="75588" e_stop="75456"/>
          <exon e_start="75371" e_stop="75352"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATTATTACTCAACGTTACTTCTGAGGGTGAAATTAAAGTGCTAACAGAGGAAGCTGAAGGCCTGAAATTGAAATTGGCAGACGCTGTAGACGTTGCAGAGGATGGAATTATATATTTCTCCGATGCTTCTTACAAATATAATATCGAACAATACATTTATGATTTTCTTGAAGGAAGACCCCATGGAAGATTGTTAAGTTATGATCCATCAACTAAACAGACTAAAACGCTACTTAGCAACCTGCATTTTGCTAATGGCGTTGCAGTCTCTCCAGATCAAAATTATGTTATCTTCTGTGAAACTCCTCTGTAAGTACTCTTCATATTTTTAATTTACTCAGCAGATATGTAGAAAAATACTTCTCATTTGCCATCTTTTTTTTAGGAGGAAATGCAAAAAGTATCATATAAAAGGCGAAAAAAAAGGATCCGTGGATATGTTTGTTGATAATTTACCTGGATTTCCTGACAACATTCGTTACGATGGTGAAGGGCATTATTGGATTGCATTTGCCTCGGTTAGTTTCTTCATAACATTTAAATTTAATGTGTTCAACAGGGTACACTGCTCTCTCATATTTTGTTTCTGATAACTTGAACAGGAAAACACATATTCATGGGA</genome_strand>
        <mrna_strand>GGATTATTACTCAACGTTACTTCTGAGGGTGAAATTAAAGTGCTAACAGAGGAAGCTGAAGGCCTGAAATTGAAATTGGCAGACGCTGTAGACGTTGCAGAGGATGGAATTATATATTTCTCCGATGCTTCTTACAAATATAATATCGAACAATACATTTATGATTTTCTTGAAGGAAGACCCCATGGAAGATTGTTAAGTTATGATCCATCAACTAAACAGACTAAAACGCTACTTAGCAACCTGCATTTTGCTAATGGCGTTGCAGTCTCTCCAGATCAAAATTATGTTATCTTCTGTGAAACTCCTCT............................................................................GAGGAAATGCAAAAAGTATCATATAAAAGGCGAAAAAAAAGGATCCGTGGATATGTTTGTTGATAATTTACCTGGATTTCCTGGACACATTCGTTACGATGGTGAAAGGCATTATTGGATTGCATTTGCCTCG....................................................................................GAAAACACATATTCATGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E270291" ref_strand="+" ref_description="SGN-E270291 [cLEM-1-F17]">
      <seq>ttgcaccaaagcgcaataaccaggtgctccgtggctccgaaaacatcggagttaaccagctattagcacccgaagacgtagcctacgatccggaatcgggagttatatacactgcgtgtgttgatgggtgggttaaaaaagtgaaagtcaacgaatcggcggcggattccacggtggaggattgggttttcaccggtggcagacctctcgggcttgctctaggacatcacggcgaagttatcgttgcagattcagaaaagggattattactcaacgttacttctgagggtgaaattaaagtgctaacagaggaagctgaaggcctgaaattgaaattggcagacgctgtagacgttgcagaggatggaattatatatttctccgatgcttcttacaaatataatatcgaacaatacatttatgattttcttgaaggaagaccccatggaagattgttaagttatgatccatcaactaaacagactaaaacgctacttagcaacctgcattttgctaatggcgttgcagtctctccagatcaaaattatgttatcttctgtgaaactcctctgaggaaatgcaaaaagtatcatataaaaggcgaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="-" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="77838" stop="75252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77538" g_stop="77279" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77278" i_stop="75976" i_length="1303">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.912" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75975" g_stop="75665" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="571" r_length="311" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75664" i_stop="75589" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75588" g_stop="75552" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="608" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="-" ref_id="SGN-E270291" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270291" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77538" e_stop="77279"/>
          <exon e_start="75975" e_stop="75665"/>
          <exon e_start="75588" e_stop="75552"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCACCAAAGCGCAATAACCAGGTGCTCCGTGGCTCCGAAAACATCGGAGTTAACCAGCTATTAGCACCCGAAGACGTAGCCTACGATCCGGAATCGGGAGTTATATACACTGCGTGTGTTGATGGGTGGGTTAAAAAAGTGAAAGTCAACGAATCGGCGGCGGATTCCACGGTGGAGGATTGGGTTTTCACCGGTGGCAGACCTCTCGGGCTTGCTCTAGGACATCACGGCGAAGTTATCGTTGCAGATTCAGAAAAGGTCAATTTTCTTTTTCTTTTTCTTTTTCTTTTGGGAAGAAATTGTTGATTAATAAAGGAATGAAAAAAAGTCTGACATACCCTTGAGCACATGCCCTTAGTTATCGATGTATACCCTACCATTATAATTTGTTACTTATTCCTATGTTTAGTACATGATCAGAAAATGGATATATTGATTGATGTTTTATTTTGAAAATATTATTTACTGTTTTAAAAAGGATGATGTTATTTATTTTTTAATATGCTTAGAAGGAAATAATTATTTTTTTTGGCAACACTTTAATTTTAAAGGACATTTTCACATAACTTTAATTTAGAAATACGTTTTTTTTTAAACTCTGTTTCAAGTTAGGTTTCATTTGTTTTCATTAAGATTTAGAGGTTTGAATCTGAATACACATCTGAATATTAAGAGTTGCATTAAGATTCAGGTGTTTTGATCTGAATATTAAAATTTGATCTTTAAATCTAAACATTTTTTGTTTTCAATAGCTAAATGTGCATGTGAAATTAACATTAATTAATAAAATGTCATAAAAAAAATTATTCCAATACATCAACAGTGTTTACAAGAAAATTATTAATATAAGAAAATACTTGAAGGATATATGAAATCTTACTAGTTCAAGAGGGAAAAAATGGTATTTGATTGAGAAAAGAGATTTTTTTTTTTTAATTATGAGATAAAAAGGCACACTCAAAGCAGAAAAACGATGATTTATTATTTGATAACTTATCAAATGAATCTTGTTAAGAATCTCCTACAAATCTGATTCATTCAAACCTCTTCATACCCATTAAGAGCCTTTTAAAAAAATAAAATAAGTGAATTTAATGTAGTGAATTTGAATGATTCAGATTAAGACCTAAAAATCAAATGTAATTAATAGGCTGAATTTGAATGATTAAGATTCAGATCTCTATTAAGTGCAGACAAATAAGACTTATACTAGGTTATTCTTTTTCAAACGATTTTGCAACGGTGGAAGTATTACTATCTAATAATGAAACTGATAAATATGGAGATACATTGGTTACATTAATGGTAATTGTTCAATAAATTACGATACAGAGGTAGCATAGTAGACAAATAATAGTCACGCGTGAAATTGCACGCAGGACTATTTTGTTTTGATGGTATGACTACAACGGAAATATAAAAATCACACCATTTTCGAGTGATAACAGTGAGATCTGAAGACAAGATATCTTAATTCCTCCGTATTTACACTATTTTGATATCAGTTCAGTATAAAATAACCTTGTATAATTATTTAGAATGAAATGTTTAAGTGTGACAGGGATTATTACTCAACGTTACTTCTGAGGGTGAAATTAAAGTGCTAACAGAGGAAGCTGAAGGCCTGAAATTGAAATTGGCAGACGCTGTAGACGTTGCAGAGGATGGAATTATATATTTCTCCGATGCTTCTTACAAATATAATATCGAACAATACATTTATGATTTTCTTGAAGGAAGACCCCATGGAAGATTGTTAAGTTATGATCCATCAACTAAACAGACTAAAACGCTACTTAGCAACCTGCATTTTGCTAATGGCGTTGCAGTCTCTCCAGATCAAAATTATGTTATCTTCTGTGAAACTCCTCTGTAAGTACTCTTCATATTTTTAATTTACTCAGCAGATATGTAGAAAAATACTTCTCATTTGCCATCTTTTTTTTAGGAGGAAATGCAAAAAGTATCATATAAAAGGCGAAAAA</genome_strand>
        <mrna_strand>TTGCACCAAAGCGCAATAACCAGGTGCTCCGTGGCTCCGAAAACATCGGAGTTAACCAGCTATTAGCACCCGAAGACGTAGCCTACGATCCGGAATCGGGAGTTATATACACTGCGTGTGTTGATGGGTGGGTTAAAAAAGTGAAAGTCAACGAATCGGCGGCGGATTCCACGGTGGAGGATTGGGTTTTCACCGGTGGCAGACCTCTCGGGCTTGCTCTAGGACATCACGGCGAAGTTATCGTTGCAGATTCAGAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATTATTACTCAACGTTACTTCTGAGGGTGAAATTAAAGTGCTAACAGAGGAAGCTGAAGGCCTGAAATTGAAATTGGCAGACGCTGTAGACGTTGCAGAGGATGGAATTATATATTTCTCCGATGCTTCTTACAAATATAATATCGAACAATACATTTATGATTTTCTTGAAGGAAGACCCCATGGAAGATTGTTAAGTTATGATCCATCAACTAAACAGACTAAAACGCTACTTAGCAACCTGCATTTTGCTAATGGCGTTGCAGTCTCTCCAGATCAAAATTATGTTATCTTCTGTGAAACTCCTCT............................................................................GAGGAAATGCAAAAAGTATCATATAAAAGGCGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E723548" ref_strand="+" ref_description="SGN-E723548 [FC20DD06]">
      <seq>gggcgattggcggccaatcggccgaattcccatggggatccgatgactagccccaatttcttcttcttcttctacaataacaactgcaaatatgacttctccctccatctttctaaaccctatttttatttcactaataatacccgttattctaggtacggttttctatcaactcgattccttcgacccggtttcttatccgacccatgtgctctctactgacccgcctattgttgcaccaaagcgcaataaccaggtgctccgtggctccgaaaacatcggagttaaccagctattagcacccgaagacgtagcctacgatccggaatcgggagttatatacactgcgtgtgttgatgggtgggttaaaaaagtgaaagtcaacgaatcggcggcggattccacggtggaggattgggttttcaccggtggcagacctctcgggcttgctctaggacatcacggcgaagttatcgttgcagattcagaaaagggattattactcaacgttacttctgagggtgaaattaaagtgctaacagaggaagctgaaggcctgaaattgaaattggcagacgctgtagacgttgcaaaggatggaattatatatttctccgatgcttcttacaaatataatatcgaacaatacatttatgattttcttgaaggaagaccccatggaagattgttaagttatgatccatcaactaaacagactaaaacgctacttagcaacctgcattttgctaatggcgttgcagtctctccagatcaaaattatgttatcttctgtgaaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="-" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="78026" stop="75369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77726" g_stop="77279" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="493" r_length="448" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77278" i_stop="75976" i_length="1303">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.912" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75975" g_stop="75669" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="800" r_length="307" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="-" ref_id="SGN-E723548" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>755</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723548" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77726" e_stop="77279"/>
          <exon e_start="75975" e_stop="75669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTAGCCCCAATTTCTTCTTCTTCTTCTACAATAACAACTGCAAATATGACTTCTCCCTCCATCTTTCTAAACCCTATTTTTATTTCACTAATAATACCCGTTATTCTAGGTACGGTTTTCTATCAACTCGATTCCTTCGACCCGGTTTCTTATCCGACCCATGTGCTCTCTACTGACCCGCCTATTGTTGCACCAAAGCGCAATAACCAGGTGCTCCGTGGCTCCGAAAACATCGGAGTTAACCAGCTATTAGCACCCGAAGACGTAGCCTACGATCCGGAATCGGGAGTTATATACACTGCGTGTGTTGATGGGTGGGTTAAAAAAGTGAAAGTCAACGAATCGGCGGCGGATTCCACGGTGGAGGATTGGGTTTTCACCGGTGGCAGACCTCTCGGGCTTGCTCTAGGACATCACGGCGAAGTTATCGTTGCAGATTCAGAAAAGGTCAATTTTCTTTTTCTTTTTCTTTTTCTTTTGGGAAGAAATTGTTGATTAATAAAGGAATGAAAAAAAGTCTGACATACCCTTGAGCACATGCCCTTAGTTATCGATGTATACCCTACCATTATAATTTGTTACTTATTCCTATGTTTAGTACATGATCAGAAAATGGATATATTGATTGATGTTTTATTTTGAAAATATTATTTACTGTTTTAAAAAGGATGATGTTATTTATTTTTTAATATGCTTAGAAGGAAATAATTATTTTTTTTGGCAACACTTTAATTTTAAAGGACATTTTCACATAACTTTAATTTAGAAATACGTTTTTTTTTAAACTCTGTTTCAAGTTAGGTTTCATTTGTTTTCATTAAGATTTAGAGGTTTGAATCTGAATACACATCTGAATATTAAGAGTTGCATTAAGATTCAGGTGTTTTGATCTGAATATTAAAATTTGATCTTTAAATCTAAACATTTTTTGTTTTCAATAGCTAAATGTGCATGTGAAATTAACATTAATTAATAAAATGTCATAAAAAAAATTATTCCAATACATCAACAGTGTTTACAAGAAAATTATTAATATAAGAAAATACTTGAAGGATATATGAAATCTTACTAGTTCAAGAGGGAAAAAATGGTATTTGATTGAGAAAAGAGATTTTTTTTTTTTAATTATGAGATAAAAAGGCACACTCAAAGCAGAAAAACGATGATTTATTATTTGATAACTTATCAAATGAATCTTGTTAAGAATCTCCTACAAATCTGATTCATTCAAACCTCTTCATACCCATTAAGAGCCTTTTAAAAAAATAAAATAAGTGAATTTAATGTAGTGAATTTGAATGATTCAGATTAAGACCTAAAAATCAAATGTAATTAATAGGCTGAATTTGAATGATTAAGATTCAGATCTCTATTAAGTGCAGACAAATAAGACTTATACTAGGTTATTCTTTTTCAAACGATTTTGCAACGGTGGAAGTATTACTATCTAATAATGAAACTGATAAATATGGAGATACATTGGTTACATTAATGGTAATTGTTCAATAAATTACGATACAGAGGTAGCATAGTAGACAAATAATAGTCACGCGTGAAATTGCACGCAGGACTATTTTGTTTTGATGGTATGACTACAACGGAAATATAAAAATCACACCATTTTCGAGTGATAACAGTGAGATCTGAAGACAAGATATCTTAATTCCTCCGTATTTACACTATTTTGATATCAGTTCAGTATAAAATAACCTTGTATAATTATTTAGAATGAAATGTTTAAGTGTGACAGGGATTATTACTCAACGTTACTTCTGAGGGTGAAATTAAAGTGCTAACAGAGGAAGCTGAAGGCCTGAAATTGAAATTGGCAGACGCTGTAGACGTTGCAGAGGATGGAATTATATATTTCTCCGATGCTTCTTACAAATATAATATCGAACAATACATTTATGATTTTCTTGAAGGAAGACCCCATGGAAGATTGTTAAGTTATGATCCATCAACTAAACAGACTAAAACGCTACTTAGCAACCTGCATTTTGCTAATGGCGTTGCAGTCTCTCCAGATCAAAATTATGTTATCTTCTGTGAAACTC</genome_strand>
        <mrna_strand>ACTAGCCCCAATTTCTTCTTCTTCTTCTACAATAACAACTGCAAATATGACTTCTCCCTCCATCTTTCTAAACCCTATTTTTATTTCACTAATAATACCCGTTATTCTAGGTACGGTTTTCTATCAACTCGATTCCTTCGACCCGGTTTCTTATCCGACCCATGTGCTCTCTACTGACCCGCCTATTGTTGCACCAAAGCGCAATAACCAGGTGCTCCGTGGCTCCGAAAACATCGGAGTTAACCAGCTATTAGCACCCGAAGACGTAGCCTACGATCCGGAATCGGGAGTTATATACACTGCGTGTGTTGATGGGTGGGTTAAAAAAGTGAAAGTCAACGAATCGGCGGCGGATTCCACGGTGGAGGATTGGGTTTTCACCGGTGGCAGACCTCTCGGGCTTGCTCTAGGACATCACGGCGAAGTTATCGTTGCAGATTCAGAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATTATTACTCAACGTTACTTCTGAGGGTGAAATTAAAGTGCTAACAGAGGAAGCTGAAGGCCTGAAATTGAAATTGGCAGACGCTGTAGACGTTGCAAAGGATGGAATTATATATTTCTCCGATGCTTCTTACAAATATAATATCGAACAATACATTTATGATTTTCTTGAAGGAAGACCCCATGGAAGATTGTTAAGTTATGATCCATCAACTAAACAGACTAAAACGCTACTTAGCAACCTGCATTTTGCTAATGGCGTTGCAGTCTCTCCAGATCAAAATTATGTTATCTTCTGTGAAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E600641" ref_strand="+" ref_description="SGN-E600641 [53657]">
      <seq>caaatatgagttctccgctcatctttctaaagccaatttttatttcagtaataatacccgttattctcggaacggttttctatcaactggattccttcgacccggcttcttatccgacccatgtgctctctactgacccgcccattgttgcaccaaagcgcaataatcagatgctccgtcgctcggaaaaaatcggagttaaccagctgttatcacccgaagacgtagcgtacgatcaaaaatccggagttatatacactggatgcgttgatggatgggttaaaaaagtgaaagtgaacgaatcggcggcagattcgacggtggaggattgggttttcaccggcggcagacctctcggacttgctttagcgacgtcacggcgaagttattgttgcagatgcggacaaggggctactactgaacgttacttcagtgggtgagattaaagtgctaacagaggaagctgaaggcctgaaattcaaattagcagacgctgtagacgttgcagaggatggaattcatatatttctccgatgcttcttacaaatataatatcgaacagtacatttatgatattcttgaaggaagacccaatggaagattgtcacagttatgatccatcaactaaacagaccaaaacggctacttagcgacctgtattttgctaatggtgttgcagtctcctcagatcagacatcatgttatcttctgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="-" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="77985" stop="75375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77685" g_stop="77279" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="408" r_length="408" r_score="0.899"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77278" i_stop="75976" i_length="1303">
            <donor d_prob="1.000" d_score="0.82"/>
            <acceptor a_prob="0.912" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75975" g_stop="75675" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="713" r_length="305" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="-" ref_id="SGN-E600641" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E600641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77685" e_stop="77279"/>
          <exon e_start="75975" e_stop="75675"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATATGACTTCTCCCTCCATCTTTCTAAACCCTATTTTTATTTCACTAATAATACCCGTTATTCTAGGTACGGTTTTCTATCAACTCGATTCCTTCGACCCGGTTTCTTATCCGACCCATGTGCTCTCTACTGACCCGCCTATTGTTGCACCAAAGCGCAATAACCAGGTGCTCCGTGGCTCCGAAAACATCGGAGTTAACCAGCTATTAGCACCCGAAGACGTAGCCTACGATCCGGAATCGGGAGTTATATACACTGCGTGTGTTGATGGGTGGGTTAAAAAAGTGAAAGTCAACGAATCGGCGGCGGATTCCACGGTGGAGGATTGGGTTTTCACCGGTGGCAGACCTCTCGGGCTTGCTCTAG-GACATCACGGCGAAGTTATCGTTGCAGATTCAGAAAAGGTCAATTTTCTTTTTCTTTTTCTTTTTCTTTTGGGAAGAAATTGTTGATTAATAAAGGAATGAAAAAAAGTCTGACATACCCTTGAGCACATGCCCTTAGTTATCGATGTATACCCTACCATTATAATTTGTTACTTATTCCTATGTTTAGTACATGATCAGAAAATGGATATATTGATTGATGTTTTATTTTGAAAATATTATTTACTGTTTTAAAAAGGATGATGTTATTTATTTTTTAATATGCTTAGAAGGAAATAATTATTTTTTTTGGCAACACTTTAATTTTAAAGGACATTTTCACATAACTTTAATTTAGAAATACGTTTTTTTTTAAACTCTGTTTCAAGTTAGGTTTCATTTGTTTTCATTAAGATTTAGAGGTTTGAATCTGAATACACATCTGAATATTAAGAGTTGCATTAAGATTCAGGTGTTTTGATCTGAATATTAAAATTTGATCTTTAAATCTAAACATTTTTTGTTTTCAATAGCTAAATGTGCATGTGAAATTAACATTAATTAATAAAATGTCATAAAAAAAATTATTCCAATACATCAACAGTGTTTACAAGAAAATTATTAATATAAGAAAATACTTGAAGGATATATGAAATCTTACTAGTTCAAGAGGGAAAAAATGGTATTTGATTGAGAAAAGAGATTTTTTTTTTTTAATTATGAGATAAAAAGGCACACTCAAAGCAGAAAAACGATGATTTATTATTTGATAACTTATCAAATGAATCTTGTTAAGAATCTCCTACAAATCTGATTCATTCAAACCTCTTCATACCCATTAAGAGCCTTTTAAAAAAATAAAATAAGTGAATTTAATGTAGTGAATTTGAATGATTCAGATTAAGACCTAAAAATCAAATGTAATTAATAGGCTGAATTTGAATGATTAAGATTCAGATCTCTATTAAGTGCAGACAAATAAGACTTATACTAGGTTATTCTTTTTCAAACGATTTTGCAACGGTGGAAGTATTACTATCTAATAATGAAACTGATAAATATGGAGATACATTGGTTACATTAATGGTAATTGTTCAATAAATTACGATACAGAGGTAGCATAGTAGACAAATAATAGTCACGCGTGAAATTGCACGCAGGACTATTTTGTTTTGATGGTATGACTACAACGGAAATATAAAAATCACACCATTTTCGAGTGATAACAGTGAGATCTGAAGACAAGATATCTTAATTCCTCCGTATTTACACTATTTTGATATCAGTTCAGTATAAAATAACCTTGTATAATTATTTAGAATGAAATGTTTAAGTGTGACAGGGATTATTACTCAACGTTACTTCTGAGGGTGAAATTAAAGTGCTAACAGAGGAAGCTGAAGGCCTGAAATTGAAATTGGCAGACGCTGTAGACGTTGCAGAGGATGGAATT-ATATATTTCTCCGATGCTTCTTACAAATATAATATCGAACAATACATTTATGATTTTCTTGAAGGAAGACCCCATGGAAGATTGTTA-AGTTATGATCCATCAACTAAACAGACTAAAAC-GCTACTTAGCAACCTGCATTTTGCTAATGGCGTTGCAGTCTCTCCAGATCA-AAATTATGTTATCTTCTGTG</genome_strand>
        <mrna_strand>CAAATATGAGTTCTCCGCTCATCTTTCTAAAGCCAATTTTTATTTCAGTAATAATACCCGTTATTCTCGGAACGGTTTTCTATCAACTGGATTCCTTCGACCCGGCTTCTTATCCGACCCATGTGCTCTCTACTGACCCGCCCATTGTTGCACCAAAGCGCAATAATCAGATGCTCCGTCGCTCGGAAAAAATCGGAGTTAACCAGCTGTTATCACCCGAAGACGTAGCGTACGATCAAAAATCCGGAGTTATATACACTGGATGCGTTGATGGATGGGTTAAAAAAGTGAAAGTGAACGAATCGGCGGCAGATTCGACGGTGGAGGATTGGGTTTTCACCGGCGGCAGACCTCTCGGACTTGCTTTAGCGACGTCACGGCGAAGTTATTGTTGCAGATGCGGACAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCTACTACTGAACGTTACTTCAGTGGGTGAGATTAAAGTGCTAACAGAGGAAGCTGAAGGCCTGAAATTCAAATTAGCAGACGCTGTAGACGTTGCAGAGGATGGAATTCATATATTTCTCCGATGCTTCTTACAAATATAATATCGAACAGTACATTTATGATATTCTTGAAGGAAGACCCAATGGAAGATTGTCACAGTTATGATCCATCAACTAAACAGACCAAAACGGCTACTTAGCGACCTGTATTTTGCTAATGGTGTTGCAGTCTCCTCAGATCAGACATCATGTTATCTTCTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E302320" ref_strand="+" ref_description="SGN-E302320 [cLEW-19-J22]">
      <seq>gttttctatcaactcgattccttcgacccggtttcttatccgacccatgtgctctctactgacccgcctattgttgcaccaaagcgcaataaccaggtgctccgtggctccgaaaacatcggagttaaccagctattagcacccgaagacgtagcctacgatccggaatcgggagttatatacactgcgtgtgttgatgggtgggttaaaaaagtgaaagtcaacgaatcggcggcggattccacggtggaggattgggttttcaccggtggcagacctctcgggcttgctctaggacatcacggcgaagttatcgttgcagattcagaaaagggattattactcaacgttacttctgagggtgaaattaaagtgctaacagaggaagctgaaggcctgaaattgaaattggcagacgctgtagacgttgcagaggatggaattatatatttctccgatgcttcttacaaatataatatcgaacaatacatttatgattttcttgaaggaagaccccatggaagattgttaagttatgatccatcaactaaacagactaaaacgctacttagcaacctgcattttgctaatggcgttgcagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="-" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="77911" stop="75406"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77611" g_stop="77279" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="333" r_length="333" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77278" i_stop="75976" i_length="1303">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.912" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75975" g_stop="75706" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="603" r_length="270" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="-" ref_id="SGN-E302320" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77611" e_stop="77279"/>
          <exon e_start="75975" e_stop="75706"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTCTATCAACTCGATTCCTTCGACCCGGTTTCTTATCCGACCCATGTGCTCTCTACTGACCCGCCTATTGTTGCACCAAAGCGCAATAACCAGGTGCTCCGTGGCTCCGAAAACATCGGAGTTAACCAGCTATTAGCACCCGAAGACGTAGCCTACGATCCGGAATCGGGAGTTATATACACTGCGTGTGTTGATGGGTGGGTTAAAAAAGTGAAAGTCAACGAATCGGCGGCGGATTCCACGGTGGAGGATTGGGTTTTCACCGGTGGCAGACCTCTCGGGCTTGCTCTAGGACATCACGGCGAAGTTATCGTTGCAGATTCAGAAAAGGTCAATTTTCTTTTTCTTTTTCTTTTTCTTTTGGGAAGAAATTGTTGATTAATAAAGGAATGAAAAAAAGTCTGACATACCCTTGAGCACATGCCCTTAGTTATCGATGTATACCCTACCATTATAATTTGTTACTTATTCCTATGTTTAGTACATGATCAGAAAATGGATATATTGATTGATGTTTTATTTTGAAAATATTATTTACTGTTTTAAAAAGGATGATGTTATTTATTTTTTAATATGCTTAGAAGGAAATAATTATTTTTTTTGGCAACACTTTAATTTTAAAGGACATTTTCACATAACTTTAATTTAGAAATACGTTTTTTTTTAAACTCTGTTTCAAGTTAGGTTTCATTTGTTTTCATTAAGATTTAGAGGTTTGAATCTGAATACACATCTGAATATTAAGAGTTGCATTAAGATTCAGGTGTTTTGATCTGAATATTAAAATTTGATCTTTAAATCTAAACATTTTTTGTTTTCAATAGCTAAATGTGCATGTGAAATTAACATTAATTAATAAAATGTCATAAAAAAAATTATTCCAATACATCAACAGTGTTTACAAGAAAATTATTAATATAAGAAAATACTTGAAGGATATATGAAATCTTACTAGTTCAAGAGGGAAAAAATGGTATTTGATTGAGAAAAGAGATTTTTTTTTTTTAATTATGAGATAAAAAGGCACACTCAAAGCAGAAAAACGATGATTTATTATTTGATAACTTATCAAATGAATCTTGTTAAGAATCTCCTACAAATCTGATTCATTCAAACCTCTTCATACCCATTAAGAGCCTTTTAAAAAAATAAAATAAGTGAATTTAATGTAGTGAATTTGAATGATTCAGATTAAGACCTAAAAATCAAATGTAATTAATAGGCTGAATTTGAATGATTAAGATTCAGATCTCTATTAAGTGCAGACAAATAAGACTTATACTAGGTTATTCTTTTTCAAACGATTTTGCAACGGTGGAAGTATTACTATCTAATAATGAAACTGATAAATATGGAGATACATTGGTTACATTAATGGTAATTGTTCAATAAATTACGATACAGAGGTAGCATAGTAGACAAATAATAGTCACGCGTGAAATTGCACGCAGGACTATTTTGTTTTGATGGTATGACTACAACGGAAATATAAAAATCACACCATTTTCGAGTGATAACAGTGAGATCTGAAGACAAGATATCTTAATTCCTCCGTATTTACACTATTTTGATATCAGTTCAGTATAAAATAACCTTGTATAATTATTTAGAATGAAATGTTTAAGTGTGACAGGGATTATTACTCAACGTTACTTCTGAGGGTGAAATTAAAGTGCTAACAGAGGAAGCTGAAGGCCTGAAATTGAAATTGGCAGACGCTGTAGACGTTGCAGAGGATGGAATTATATATTTCTCCGATGCTTCTTACAAATATAATATCGAACAATACATTTATGATTTTCTTGAAGGAAGACCCCATGGAAGATTGTTAAGTTATGATCCATCAACTAAACAGACTAAAACGCTACTTAGCAACCTGCATTTTGCTAATGGCGTTGCAGTC</genome_strand>
        <mrna_strand>GTTTTCTATCAACTCGATTCCTTCGACCCGGTTTCTTATCCGACCCATGTGCTCTCTACTGACCCGCCTATTGTTGCACCAAAGCGCAATAACCAGGTGCTCCGTGGCTCCGAAAACATCGGAGTTAACCAGCTATTAGCACCCGAAGACGTAGCCTACGATCCGGAATCGGGAGTTATATACACTGCGTGTGTTGATGGGTGGGTTAAAAAAGTGAAAGTCAACGAATCGGCGGCGGATTCCACGGTGGAGGATTGGGTTTTCACCGGTGGCAGACCTCTCGGGCTTGCTCTAGGACATCACGGCGAAGTTATCGTTGCAGATTCAGAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATTATTACTCAACGTTACTTCTGAGGGTGAAATTAAAGTGCTAACAGAGGAAGCTGAAGGCCTGAAATTGAAATTGGCAGACGCTGTAGACGTTGCAGAGGATGGAATTATATATTTCTCCGATGCTTCTTACAAATATAATATCGAACAATACATTTATGATTTTCTTGAAGGAAGACCCCATGGAAGATTGTTAAGTTATGATCCATCAACTAAACAGACTAAAACGCTACTTAGCAACCTGCATTTTGCTAATGGCGTTGCAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E270448" ref_strand="+" ref_description="SGN-E270448 [cLEM-1-F19]">
      <seq>ttgcaccaaagcgcaataaccaggtgctccggggctccgaaaacatcggagttaaccagctattagcacccgaagacgtagcctacgatccggaatcgggagttatatacactgcgtgtgttgatgggtgggttaaaaaagtgaaagtcaacgagtcggcggcggattacacggtggaggattgggttatcaccggtggcagacctctcgggcttgctctaggacatcgcggcgaatgtatcgctgcagattcagaaaagggattattactcaaggttacttctgagggtgaaattaaagtgctaacagaggaagctgaaggcctgaaattgaaattggcagacgctgtaaacattgcagaggatggaattatatatttctccgatgcttcttacaaatataatatcgaacaatacatttatgattttcttgaaggaagaccccatggaagattgataacttatgatccatcagactaaacagactaaaacgctactgatcaagctgcattttgctaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="-" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="77838" stop="75417"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77538" g_stop="77279" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77278" i_stop="75976" i_length="1303">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.912" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75975" g_stop="75717" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="520" r_length="260" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="-" ref_id="SGN-E270448" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77538" e_stop="77279"/>
          <exon e_start="75975" e_stop="75717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCACCAAAGCGCAATAACCAGGTGCTCCGTGGCTCCGAAAACATCGGAGTTAACCAGCTATTAGCACCCGAAGACGTAGCCTACGATCCGGAATCGGGAGTTATATACACTGCGTGTGTTGATGGGTGGGTTAAAAAAGTGAAAGTCAACGAATCGGCGGCGGATTCCACGGTGGAGGATTGGGTTTTCACCGGTGGCAGACCTCTCGGGCTTGCTCTAGGACATCACGGCGAAGTTATCGTTGCAGATTCAGAAAAGGTCAATTTTCTTTTTCTTTTTCTTTTTCTTTTGGGAAGAAATTGTTGATTAATAAAGGAATGAAAAAAAGTCTGACATACCCTTGAGCACATGCCCTTAGTTATCGATGTATACCCTACCATTATAATTTGTTACTTATTCCTATGTTTAGTACATGATCAGAAAATGGATATATTGATTGATGTTTTATTTTGAAAATATTATTTACTGTTTTAAAAAGGATGATGTTATTTATTTTTTAATATGCTTAGAAGGAAATAATTATTTTTTTTGGCAACACTTTAATTTTAAAGGACATTTTCACATAACTTTAATTTAGAAATACGTTTTTTTTTAAACTCTGTTTCAAGTTAGGTTTCATTTGTTTTCATTAAGATTTAGAGGTTTGAATCTGAATACACATCTGAATATTAAGAGTTGCATTAAGATTCAGGTGTTTTGATCTGAATATTAAAATTTGATCTTTAAATCTAAACATTTTTTGTTTTCAATAGCTAAATGTGCATGTGAAATTAACATTAATTAATAAAATGTCATAAAAAAAATTATTCCAATACATCAACAGTGTTTACAAGAAAATTATTAATATAAGAAAATACTTGAAGGATATATGAAATCTTACTAGTTCAAGAGGGAAAAAATGGTATTTGATTGAGAAAAGAGATTTTTTTTTTTTAATTATGAGATAAAAAGGCACACTCAAAGCAGAAAAACGATGATTTATTATTTGATAACTTATCAAATGAATCTTGTTAAGAATCTCCTACAAATCTGATTCATTCAAACCTCTTCATACCCATTAAGAGCCTTTTAAAAAAATAAAATAAGTGAATTTAATGTAGTGAATTTGAATGATTCAGATTAAGACCTAAAAATCAAATGTAATTAATAGGCTGAATTTGAATGATTAAGATTCAGATCTCTATTAAGTGCAGACAAATAAGACTTATACTAGGTTATTCTTTTTCAAACGATTTTGCAACGGTGGAAGTATTACTATCTAATAATGAAACTGATAAATATGGAGATACATTGGTTACATTAATGGTAATTGTTCAATAAATTACGATACAGAGGTAGCATAGTAGACAAATAATAGTCACGCGTGAAATTGCACGCAGGACTATTTTGTTTTGATGGTATGACTACAACGGAAATATAAAAATCACACCATTTTCGAGTGATAACAGTGAGATCTGAAGACAAGATATCTTAATTCCTCCGTATTTACACTATTTTGATATCAGTTCAGTATAAAATAACCTTGTATAATTATTTAGAATGAAATGTTTAAGTGTGACAGGGATTATTACTCAACGTTACTTCTGAGGGTGAAATTAAAGTGCTAACAGAGGAAGCTGAAGGCCTGAAATTGAAATTGGCAGACGCTGTAGACGTTGCAGAGGATGGAATTATATATTTCTCCGATGCTTCTTACAAATATAATATCGAACAATACATTTATGATTTTCTTGAAGGAAGACCCCATGGAAGATTGTTAAGTTATGATCCATCA-ACTAAACAGACTAAAACGCTACTTAGCAACCTGCATTTTGCTAATG</genome_strand>
        <mrna_strand>TTGCACCAAAGCGCAATAACCAGGTGCTCCGGGGCTCCGAAAACATCGGAGTTAACCAGCTATTAGCACCCGAAGACGTAGCCTACGATCCGGAATCGGGAGTTATATACACTGCGTGTGTTGATGGGTGGGTTAAAAAAGTGAAAGTCAACGAGTCGGCGGCGGATTACACGGTGGAGGATTGGGTTATCACCGGTGGCAGACCTCTCGGGCTTGCTCTAGGACATCGCGGCGAATGTATCGCTGCAGATTCAGAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATTATTACTCAAGGTTACTTCTGAGGGTGAAATTAAAGTGCTAACAGAGGAAGCTGAAGGCCTGAAATTGAAATTGGCAGACGCTGTAAACATTGCAGAGGATGGAATTATATATTTCTCCGATGCTTCTTACAAATATAATATCGAACAATACATTTATGATTTTCTTGAAGGAAGACCCCATGGAAGATTGATAACTTATGATCCATCAGACTAAACAGACTAAAACGCTACTGATCAAGCTGCATTTTGCTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E213450" ref_strand="+" ref_description="SGN-E213450 [cLEC-71-J5]">
      <seq>agcacccgaagacgtagcctacgatccggaatcgggagttatatacactgcgtgtgttgatgggtgggttaaaaaagtgaaagtctacgaatcggcggcggattccacggtggaggattgggttttcaccggtggcagacctctcgggcttgctctaggacatcacggcgaagttatcgttgcagattcagaaaagggattattactcaacgttacttctgagggtgaaattaaagtgctaacagaagaaactgaaagcctgaaattgaaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="-" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="77774" stop="75598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77474" g_stop="77279" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77278" i_stop="75976" i_length="1303">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.912" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75975" g_stop="75898" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="274" r_length="78" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="-" ref_id="SGN-E213450" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>274</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213450" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77474" e_stop="77279"/>
          <exon e_start="75975" e_stop="75898"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCACCCGAAGACGTAGCCTACGATCCGGAATCGGGAGTTATATACACTGCGTGTGTTGATGGGTGGGTTAAAAAAGTGAAAGTCAACGAATCGGCGGCGGATTCCACGGTGGAGGATTGGGTTTTCACCGGTGGCAGACCTCTCGGGCTTGCTCTAGGACATCACGGCGAAGTTATCGTTGCAGATTCAGAAAAGGTCAATTTTCTTTTTCTTTTTCTTTTTCTTTTGGGAAGAAATTGTTGATTAATAAAGGAATGAAAAAAAGTCTGACATACCCTTGAGCACATGCCCTTAGTTATCGATGTATACCCTACCATTATAATTTGTTACTTATTCCTATGTTTAGTACATGATCAGAAAATGGATATATTGATTGATGTTTTATTTTGAAAATATTATTTACTGTTTTAAAAAGGATGATGTTATTTATTTTTTAATATGCTTAGAAGGAAATAATTATTTTTTTTGGCAACACTTTAATTTTAAAGGACATTTTCACATAACTTTAATTTAGAAATACGTTTTTTTTTAAACTCTGTTTCAAGTTAGGTTTCATTTGTTTTCATTAAGATTTAGAGGTTTGAATCTGAATACACATCTGAATATTAAGAGTTGCATTAAGATTCAGGTGTTTTGATCTGAATATTAAAATTTGATCTTTAAATCTAAACATTTTTTGTTTTCAATAGCTAAATGTGCATGTGAAATTAACATTAATTAATAAAATGTCATAAAAAAAATTATTCCAATACATCAACAGTGTTTACAAGAAAATTATTAATATAAGAAAATACTTGAAGGATATATGAAATCTTACTAGTTCAAGAGGGAAAAAATGGTATTTGATTGAGAAAAGAGATTTTTTTTTTTTAATTATGAGATAAAAAGGCACACTCAAAGCAGAAAAACGATGATTTATTATTTGATAACTTATCAAATGAATCTTGTTAAGAATCTCCTACAAATCTGATTCATTCAAACCTCTTCATACCCATTAAGAGCCTTTTAAAAAAATAAAATAAGTGAATTTAATGTAGTGAATTTGAATGATTCAGATTAAGACCTAAAAATCAAATGTAATTAATAGGCTGAATTTGAATGATTAAGATTCAGATCTCTATTAAGTGCAGACAAATAAGACTTATACTAGGTTATTCTTTTTCAAACGATTTTGCAACGGTGGAAGTATTACTATCTAATAATGAAACTGATAAATATGGAGATACATTGGTTACATTAATGGTAATTGTTCAATAAATTACGATACAGAGGTAGCATAGTAGACAAATAATAGTCACGCGTGAAATTGCACGCAGGACTATTTTGTTTTGATGGTATGACTACAACGGAAATATAAAAATCACACCATTTTCGAGTGATAACAGTGAGATCTGAAGACAAGATATCTTAATTCCTCCGTATTTACACTATTTTGATATCAGTTCAGTATAAAATAACCTTGTATAATTATTTAGAATGAAATGTTTAAGTGTGACAGGGATTATTACTCAACGTTACTTCTGAGGGTGAAATTAAAGTGCTAACAGAGGAAGCTGAAGGCCTGAAATTGAAATTG</genome_strand>
        <mrna_strand>AGCACCCGAAGACGTAGCCTACGATCCGGAATCGGGAGTTATATACACTGCGTGTGTTGATGGGTGGGTTAAAAAAGTGAAAGTCTACGAATCGGCGGCGGATTCCACGGTGGAGGATTGGGTTTTCACCGGTGGCAGACCTCTCGGGCTTGCTCTAGGACATCACGGCGAAGTTATCGTTGCAGATTCAGAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATTATTACTCAACGTTACTTCTGAGGGTGAAATTAAAGTGCTAACAGAAGAAACTGAAAGCCTGAAATTGAAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E203473" ref_strand="+" ref_description="SGN-E203473 [cLEC-15-D13]">
      <seq>tttctatcaactcgattccttcgacccggtttcttatccgacccatgtgctctctactgacccgcctattgttgcaccaaagcgcaataaccaggtgctccgtggctccgaaaacatcggagttaaccagctattagcacccgaagacgtagcctacgatccggaatcgggagttatatacactgcgtgtgttgatgggtgggttaaaaaagtgaaagtcaacgaatcggcggcggattccacggtggaggattgggttttcaccggtggcagacctctcgggcttgctctaggacatcacggcgaagttatcgttgcagattcagaaaagggattattactcaacgttacttctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="-" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="77909" stop="75650"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77609" g_stop="77279" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77278" i_stop="75976" i_length="1303">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.912" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75975" g_stop="75950" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="357" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="-" ref_id="SGN-E203473" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203473" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77609" e_stop="77279"/>
          <exon e_start="75975" e_stop="75950"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTATCAACTCGATTCCTTCGACCCGGTTTCTTATCCGACCCATGTGCTCTCTACTGACCCGCCTATTGTTGCACCAAAGCGCAATAACCAGGTGCTCCGTGGCTCCGAAAACATCGGAGTTAACCAGCTATTAGCACCCGAAGACGTAGCCTACGATCCGGAATCGGGAGTTATATACACTGCGTGTGTTGATGGGTGGGTTAAAAAAGTGAAAGTCAACGAATCGGCGGCGGATTCCACGGTGGAGGATTGGGTTTTCACCGGTGGCAGACCTCTCGGGCTTGCTCTAGGACATCACGGCGAAGTTATCGTTGCAGATTCAGAAAAGGTCAATTTTCTTTTTCTTTTTCTTTTTCTTTTGGGAAGAAATTGTTGATTAATAAAGGAATGAAAAAAAGTCTGACATACCCTTGAGCACATGCCCTTAGTTATCGATGTATACCCTACCATTATAATTTGTTACTTATTCCTATGTTTAGTACATGATCAGAAAATGGATATATTGATTGATGTTTTATTTTGAAAATATTATTTACTGTTTTAAAAAGGATGATGTTATTTATTTTTTAATATGCTTAGAAGGAAATAATTATTTTTTTTGGCAACACTTTAATTTTAAAGGACATTTTCACATAACTTTAATTTAGAAATACGTTTTTTTTTAAACTCTGTTTCAAGTTAGGTTTCATTTGTTTTCATTAAGATTTAGAGGTTTGAATCTGAATACACATCTGAATATTAAGAGTTGCATTAAGATTCAGGTGTTTTGATCTGAATATTAAAATTTGATCTTTAAATCTAAACATTTTTTGTTTTCAATAGCTAAATGTGCATGTGAAATTAACATTAATTAATAAAATGTCATAAAAAAAATTATTCCAATACATCAACAGTGTTTACAAGAAAATTATTAATATAAGAAAATACTTGAAGGATATATGAAATCTTACTAGTTCAAGAGGGAAAAAATGGTATTTGATTGAGAAAAGAGATTTTTTTTTTTTAATTATGAGATAAAAAGGCACACTCAAAGCAGAAAAACGATGATTTATTATTTGATAACTTATCAAATGAATCTTGTTAAGAATCTCCTACAAATCTGATTCATTCAAACCTCTTCATACCCATTAAGAGCCTTTTAAAAAAATAAAATAAGTGAATTTAATGTAGTGAATTTGAATGATTCAGATTAAGACCTAAAAATCAAATGTAATTAATAGGCTGAATTTGAATGATTAAGATTCAGATCTCTATTAAGTGCAGACAAATAAGACTTATACTAGGTTATTCTTTTTCAAACGATTTTGCAACGGTGGAAGTATTACTATCTAATAATGAAACTGATAAATATGGAGATACATTGGTTACATTAATGGTAATTGTTCAATAAATTACGATACAGAGGTAGCATAGTAGACAAATAATAGTCACGCGTGAAATTGCACGCAGGACTATTTTGTTTTGATGGTATGACTACAACGGAAATATAAAAATCACACCATTTTCGAGTGATAACAGTGAGATCTGAAGACAAGATATCTTAATTCCTCCGTATTTACACTATTTTGATATCAGTTCAGTATAAAATAACCTTGTATAATTATTTAGAATGAAATGTTTAAGTGTGACAGGGATTATTACTCAACGTTACTTCTGA</genome_strand>
        <mrna_strand>TTTCTATCAACTCGATTCCTTCGACCCGGTTTCTTATCCGACCCATGTGCTCTCTACTGACCCGCCTATTGTTGCACCAAAGCGCAATAACCAGGTGCTCCGTGGCTCCGAAAACATCGGAGTTAACCAGCTATTAGCACCCGAAGACGTAGCCTACGATCCGGAATCGGGAGTTATATACACTGCGTGTGTTGATGGGTGGGTTAAAAAAGTGAAAGTCAACGAATCGGCGGCGGATTCCACGGTGGAGGATTGGGTTTTCACCGGTGGCAGACCTCTCGGGCTTGCTCTAGGACATCACGGCGAAGTTATCGTTGCAGATTCAGAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATTATTACTCAACGTTACTTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E331116" ref_strand="+" ref_description="SGN-E331116 [cTOD-6-H5]">
      <seq>ctttgctgacgatttgttattatctcaaatgttaatccttcatctgctcttctattcacactagccccaatttcttcttcttcttctacaataacaactgcaaatatgacttctccctccatctttctaaaccctatttttatttcactaataatacccgttattctaggtacggttttctatcaactcgattccttcgacccggtttcttatccgacccatgtgctctctactgacccgcctattgttgcaccaaagcgcaataaccaggtgctccgtggctccgaaaacatcggagttaaccagctattagcacccgaagacgtagcctacgatccggaatcgggagttatatacactgcgtgtgttgatgggtgggttaaaaaagtgaaagtcaacgaatcggcggcggattccacggtggaggattgggttttcaccggtggcagacctctcgggcttgctctaggacatcacggcgaagttatcgttgcagattcagaaaagtgtgacagggattattactcaacgttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="-" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="78085" stop="75656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77785" g_stop="77279" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77278" i_stop="75984" i_length="1295">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75983" g_stop="75956" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="535" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="-" ref_id="SGN-E331116" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77785" e_stop="77279"/>
          <exon e_start="75983" e_stop="75956"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGCTGACGATTTGTTATTATCTCAAATGTTAATCCTTCATCTGCTCTTCTATTCACACTAGCCCCAATTTCTTCTTCTTCTTCTACAATAACAACTGCAAATATGACTTCTCCCTCCATCTTTCTAAACCCTATTTTTATTTCACTAATAATACCCGTTATTCTAGGTACGGTTTTCTATCAACTCGATTCCTTCGACCCGGTTTCTTATCCGACCCATGTGCTCTCTACTGACCCGCCTATTGTTGCACCAAAGCGCAATAACCAGGTGCTCCGTGGCTCCGAAAACATCGGAGTTAACCAGCTATTAGCACCCGAAGACGTAGCCTACGATCCGGAATCGGGAGTTATATACACTGCGTGTGTTGATGGGTGGGTTAAAAAAGTGAAAGTCAACGAATCGGCGGCGGATTCCACGGTGGAGGATTGGGTTTTCACCGGTGGCAGACCTCTCGGGCTTGCTCTAGGACATCACGGCGAAGTTATCGTTGCAGATTCAGAAAAGGTCAATTTTCTTTTTCTTTTTCTTTTTCTTTTGGGAAGAAATTGTTGATTAATAAAGGAATGAAAAAAAGTCTGACATACCCTTGAGCACATGCCCTTAGTTATCGATGTATACCCTACCATTATAATTTGTTACTTATTCCTATGTTTAGTACATGATCAGAAAATGGATATATTGATTGATGTTTTATTTTGAAAATATTATTTACTGTTTTAAAAAGGATGATGTTATTTATTTTTTAATATGCTTAGAAGGAAATAATTATTTTTTTTGGCAACACTTTAATTTTAAAGGACATTTTCACATAACTTTAATTTAGAAATACGTTTTTTTTTAAACTCTGTTTCAAGTTAGGTTTCATTTGTTTTCATTAAGATTTAGAGGTTTGAATCTGAATACACATCTGAATATTAAGAGTTGCATTAAGATTCAGGTGTTTTGATCTGAATATTAAAATTTGATCTTTAAATCTAAACATTTTTTGTTTTCAATAGCTAAATGTGCATGTGAAATTAACATTAATTAATAAAATGTCATAAAAAAAATTATTCCAATACATCAACAGTGTTTACAAGAAAATTATTAATATAAGAAAATACTTGAAGGATATATGAAATCTTACTAGTTCAAGAGGGAAAAAATGGTATTTGATTGAGAAAAGAGATTTTTTTTTTTTAATTATGAGATAAAAAGGCACACTCAAAGCAGAAAAACGATGATTTATTATTTGATAACTTATCAAATGAATCTTGTTAAGAATCTCCTACAAATCTGATTCATTCAAACCTCTTCATACCCATTAAGAGCCTTTTAAAAAAATAAAATAAGTGAATTTAATGTAGTGAATTTGAATGATTCAGATTAAGACCTAAAAATCAAATGTAATTAATAGGCTGAATTTGAATGATTAAGATTCAGATCTCTATTAAGTGCAGACAAATAAGACTTATACTAGGTTATTCTTTTTCAAACGATTTTGCAACGGTGGAAGTATTACTATCTAATAATGAAACTGATAAATATGGAGATACATTGGTTACATTAATGGTAATTGTTCAATAAATTACGATACAGAGGTAGCATAGTAGACAAATAATAGTCACGCGTGAAATTGCACGCAGGACTATTTTGTTTTGATGGTATGACTACAACGGAAATATAAAAATCACACCATTTTCGAGTGATAACAGTGAGATCTGAAGACAAGATATCTTAATTCCTCCGTATTTACACTATTTTGATATCAGTTCAGTATAAAATAACCTTGTATAATTATTTAGAATGAAATGTTTAAGTGTGACAGGGATTATTACTCAACGTTAC</genome_strand>
        <mrna_strand>CTTTGCTGACGATTTGTTATTATCTCAAATGTTAATCCTTCATCTGCTCTTCTATTCACACTAGCCCCAATTTCTTCTTCTTCTTCTACAATAACAACTGCAAATATGACTTCTCCCTCCATCTTTCTAAACCCTATTTTTATTTCACTAATAATACCCGTTATTCTAGGTACGGTTTTCTATCAACTCGATTCCTTCGACCCGGTTTCTTATCCGACCCATGTGCTCTCTACTGACCCGCCTATTGTTGCACCAAAGCGCAATAACCAGGTGCTCCGTGGCTCCGAAAACATCGGAGTTAACCAGCTATTAGCACCCGAAGACGTAGCCTACGATCCGGAATCGGGAGTTATATACACTGCGTGTGTTGATGGGTGGGTTAAAAAAGTGAAAGTCAACGAATCGGCGGCGGATTCCACGGTGGAGGATTGGGTTTTCACCGGTGGCAGACCTCTCGGGCTTGCTCTAGGACATCACGGCGAAGTTATCGTTGCAGATTCAGAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGACAGGGATTATTACTCAACGTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E272329" ref_strand="+" ref_description="SGN-E272329 [cLEM-19-J22]">
      <seq>aaattttatttttttgttatgataagaatggaaacaaagaggaatacgagtcaacacataccttcttctttgctgacgatttgttattatctcaaatgttaatccttcatctgctcttctattcacactagccccaatttcttcttcttcttctacaataacaactgcaaatatgacttctccctccatctttctaaaccctatttttatttcactaataatacccgttattctaggtacggttttctatcaactcgattccttcgacccggtttcttatccgacccatgtgctctctactgacccgcctattgttgcaccaaagcgcaataaccaggtgctccgtggctccgaaaacatcggagttaaccagctattagcacccgaagacgtagcctacgatccggaatcgggagttatatacactgcgtgtgttgatgggtgggttaaaaaagtgaaagtcaacgaatcggcggcggattccacggtggaggattgggttttcaccggtggcagacctctcgggcttgctctangacatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="-" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="78152" stop="77009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77852" g_stop="77309" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="544" r_length="544" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="-" ref_id="SGN-E272329" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272329" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77852" e_stop="77309"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTTATTTTTTTGTTATGATAAGAATGGAAACAAAGAGGAATACGAGTCAACACATACCTTCTTCTTTGCTGACGATTTGTTATTATCTCAAATGTTAATCCTTCATCTGCTCTTCTATTCACACTAGCCCCAATTTCTTCTTCTTCTTCTACAATAACAACTGCAAATATGACTTCTCCCTCCATCTTTCTAAACCCTATTTTTATTTCACTAATAATACCCGTTATTCTAGGTACGGTTTTCTATCAACTCGATTCCTTCGACCCGGTTTCTTATCCGACCCATGTGCTCTCTACTGACCCGCCTATTGTTGCACCAAAGCGCAATAACCAGGTGCTCCGTGGCTCCGAAAACATCGGAGTTAACCAGCTATTAGCACCCGAAGACGTAGCCTACGATCCGGAATCGGGAGTTATATACACTGCGTGTGTTGATGGGTGGGTTAAAAAAGTGAAAGTCAACGAATCGGCGGCGGATTCCACGGTGGAGGATTGGGTTTTCACCGGTGGCAGACCTCTCGGGCTTGCTCTAGGACATCAC</genome_strand>
        <mrna_strand>AAATTTTATTTTTTTGTTATGATAAGAATGGAAACAAAGAGGAATACGAGTCAACACATACCTTCTTCTTTGCTGACGATTTGTTATTATCTCAAATGTTAATCCTTCATCTGCTCTTCTATTCACACTAGCCCCAATTTCTTCTTCTTCTTCTACAATAACAACTGCAAATATGACTTCTCCCTCCATCTTTCTAAACCCTATTTTTATTTCACTAATAATACCCGTTATTCTAGGTACGGTTTTCTATCAACTCGATTCCTTCGACCCGGTTTCTTATCCGACCCATGTGCTCTCTACTGACCCGCCTATTGTTGCACCAAAGCGCAATAACCAGGTGCTCCGTGGCTCCGAAAACATCGGAGTTAACCAGCTATTAGCACCCGAAGACGTAGCCTACGATCCGGAATCGGGAGTTATATACACTGCGTGTGTTGATGGGTGGGTTAAAAAAGTGAAAGTCAACGAATCGGCGGCGGATTCCACGGTGGAGGATTGGGTTTTCACCGGTGGCAGACCTCTCGGGCTTGCTCTANGACATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E331075" ref_strand="+" ref_description="SGN-E331075 [cTOD-6-I2]">
      <seq>ctttgctgacgatttgttattatctcaaatgttaatccttcatctgctcttctattcacactagccccaatttcttcttcttcttctacaataacaactgcaaatatgacttctccctccatctttctaaaccctatttttatttcactaataatacccgttattctaggtacggttttctatcaactcgattccttcgacccggtttcttatccgacccatgtgctctctactgacccgcctattgttgcaccaaagcgcaataaccaggtgctccgtggctccgaaaacatcggagttaaccagctattagcacccgaagacgtagcctacgatccggaatcgggagttatatacactgcgtgtgttgatgggtgggttaaaaaagtgaaagtcaacgaatcggcggcggattccacggtggaggattgggttttcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="-" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="78085" stop="77046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77785" g_stop="77346" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="440" r_length="440" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="-" ref_id="SGN-E331075" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77785" e_stop="77346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGCTGACGATTTGTTATTATCTCAAATGTTAATCCTTCATCTGCTCTTCTATTCACACTAGCCCCAATTTCTTCTTCTTCTTCTACAATAACAACTGCAAATATGACTTCTCCCTCCATCTTTCTAAACCCTATTTTTATTTCACTAATAATACCCGTTATTCTAGGTACGGTTTTCTATCAACTCGATTCCTTCGACCCGGTTTCTTATCCGACCCATGTGCTCTCTACTGACCCGCCTATTGTTGCACCAAAGCGCAATAACCAGGTGCTCCGTGGCTCCGAAAACATCGGAGTTAACCAGCTATTAGCACCCGAAGACGTAGCCTACGATCCGGAATCGGGAGTTATATACACTGCGTGTGTTGATGGGTGGGTTAAAAAAGTGAAAGTCAACGAATCGGCGGCGGATTCCACGGTGGAGGATTGGGTTTTCAC</genome_strand>
        <mrna_strand>CTTTGCTGACGATTTGTTATTATCTCAAATGTTAATCCTTCATCTGCTCTTCTATTCACACTAGCCCCAATTTCTTCTTCTTCTTCTACAATAACAACTGCAAATATGACTTCTCCCTCCATCTTTCTAAACCCTATTTTTATTTCACTAATAATACCCGTTATTCTAGGTACGGTTTTCTATCAACTCGATTCCTTCGACCCGGTTTCTTATCCGACCCATGTGCTCTCTACTGACCCGCCTATTGTTGCACCAAAGCGCAATAACCAGGTGCTCCGTGGCTCCGAAAACATCGGAGTTAACCAGCTATTAGCACCCGAAGACGTAGCCTACGATCCGGAATCGGGAGTTATATACACTGCGTGTGTTGATGGGTGGGTTAAAAAAGTGAAAGTCAACGAATCGGCGGCGGATTCCACGGTGGAGGATTGGGTTTTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E341479" ref_strand="+" ref_description="SGN-E341479 [cTOE-23-D17]">
      <seq>gaatacgagtcaacacatttcttcttctgggctgactatttgttattatgtgaaatgcccatccttcatctgctcttctattcacactaaccccaatttcttcttcttcttctacaataacaactgcaaatatgacttctccctccatctttctaaaccctattcttatttcactaataatacccgttattctaggtacgggtttctatcaactcgattccttcgacccgggttcttatccgacccatgtgctctctactgacccgcctattgttgcaccaaagcgcaataaccaggtgctccgtggctccgaaaacatcggagttaaccagcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="-" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="78111" stop="77177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77811" g_stop="77477" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="335" r_length="335" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="-" ref_id="SGN-E341479" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341479" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77811" e_stop="77477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATACGAGTCAACACATACCTTCTTCTTTGCTGACGATTTGTTATTATCTCAAATGTTAATCCTTCATCTGCTCTTCTATTCACACTAGCCCCAATTTCTTCTTCTTCTTCTACAATAACAACTGCAAATATGACTTCTCCCTCCATCTTTCTAAACCCTATTTTTATTTCACTAATAATACCCGTTATTCTAGGTACGGTTTTCTATCAACTCGATTCCTTCGACCCGGTTTCTTATCCGACCCATGTGCTCTCTACTGACCCGCCTATTGTTGCACCAAAGCGCAATAACCAGGTGCTCCGTGGCTCCGAAAACATCGGAGTTAACCAGCTA</genome_strand>
        <mrna_strand>GAATACGAGTCAACACATTTCTTCTTCTGGGCTGACTATTTGTTATTATGTGAAATGCCCATCCTTCATCTGCTCTTCTATTCACACTAACCCCAATTTCTTCTTCTTCTTCTACAATAACAACTGCAAATATGACTTCTCCCTCCATCTTTCTAAACCCTATTCTTATTTCACTAATAATACCCGTTATTCTAGGTACGGGTTTCTATCAACTCGATTCCTTCGACCCGGGTTCTTATCCGACCCATGTGCTCTCTACTGACCCGCCTATTGTTGCACCAAAGCGCAATAACCAGGTGCTCCGTGGCTCCGAAAACATCGGAGTTAACCAGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E349178" ref_strand="+" ref_description="SGN-E349178 [cTOS-2-C6]">
      <seq>gaaggatcgcgctgttgacgtagtcaaaactgatgggaaaactataagcacacttgaaattgaaggtgttttgattaggcatcctatggttttggaagttgcagttgtagcaagatgtgatgatgttcttggagagaccccttgtgcttttgtgaaactgaaaaaagggtgttttatgactgatgaagaaattatcaagttttgtgaagattggctgcaggattacatggttcctaaggcagtaatctttggtgatttaccattcaattcttcagggaaaatacagaaatttatacttagggacaaggtcaacaatgcaatgaagttgtgtctacaagttgggtgcaactcagttggcgagctgcccacaccttcatcctagtggtggggattcgaatttcgatatattccctccccaccataaaaaaaaaaaaaacattgaaatatgcatgccttaataaaaattgtcctttttcagtcttgcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="-" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="85526" stop="84436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85226" g_stop="84732" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="495" r_length="495" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="-" ref_id="SGN-E349178" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85226" e_stop="84732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGATCGCGCTGTTGACGTAGTCAAAACTGATGGGAAAACTATAAGCACACTTGAAATTGAAGGTGTTTTGATTAGGCATCCTATGGTTTTGGAAGTTGCAGTTGTAGCAAGATGTGATGATGTTCTTGGAGAGACCCCTTGTGCTTTTGTGAAACTGAAAAAAGGGTGTTTTATGACTGATGAAGAAATTATCAAGTTTTGTGAAGATTGGCTGCAGGATTACATGGTTCCTAAGGCAGTAATCTTTGGTGATTTACCATTCAATTCTTCAGGGAAAATACAGAAATTTATACTTAGGGACAAGGTCAACAATGCAATGAAGTTGTGTCTACAAGTTGGGTGCAACTCAGTTGGCGAGCTGCCCACACCTTCATCCTAGTGGTGGGGATTCGAATTTCGATATATTCCCTCCCCACCATAAAAAAAAAAAAAACATTGAAATATGCATGCCTTAATAAAAATTGTCCTTTTTCAGTCTTGCAAAAACATTGC</genome_strand>
        <mrna_strand>GAAGGATCGCGCTGTTGACGTAGTCAAAACTGATGGGAAAACTATAAGCACACTTGAAATTGAAGGTGTTTTGATTAGGCATCCTATGGTTTTGGAAGTTGCAGTTGTAGCAAGATGTGATGATGTTCTTGGAGAGACCCCTTGTGCTTTTGTGAAACTGAAAAAAGGGTGTTTTATGACTGATGAAGAAATTATCAAGTTTTGTGAAGATTGGCTGCAGGATTACATGGTTCCTAAGGCAGTAATCTTTGGTGATTTACCATTCAATTCTTCAGGGAAAATACAGAAATTTATACTTAGGGACAAGGTCAACAATGCAATGAAGTTGTGTCTACAAGTTGGGTGCAACTCAGTTGGCGAGCTGCCCACACCTTCATCCTAGTGGTGGGGATTCGAATTTCGATATATTCCCTCCCCACCATAAAAAAAAAAAAAACATTGAAATATGCATGCCTTAATAAAAATTGTCCTTTTTCAGTCTTGCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E356228" ref_strand="+" ref_description="SGN-E356228 [cTOS-20-B2]">
      <seq>gaaggatcgcgctgttgacgtagtcaaaactgatgggaaaactataagcacacttgaaattgaaggtgttttgattaggcatcctatggttttggaagttgcagttgtagcaagatgtgatgatgttcttggagagaccccttgtgcttttgtgaaactgaaaaaagggtgttttatgactgatgaagaaattatcaagttttgtgaagattggctgcaggattacatggttcctaaggcagtaatctttggtgatttaccattcaattcttcagggaaaatacagaaatttatacttagggacaaggtcaacaatgcaatgaagttgtgtctacaagttgggtgcaactcagttggcgagctgcccacaccttcatcctagtggtggggattcgaatttcgatatattccctccccaccataaaaaaaaaaaaaacattgaaatatgcatgccttaataaaaattgtcctttttcagtcttgcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="-" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="85526" stop="84436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85226" g_stop="84734" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="493" r_length="493" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="-" ref_id="SGN-E356228" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356228" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85226" e_stop="84734"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGATCGCGCTGTTGACGTAGTCAAAACTGATGGGAAAACTATAAGCACACTTGAAATTGAAGGTGTTTTGATTAGGCATCCTATGGTTTTGGAAGTTGCAGTTGTAGCAAGATGTGATGATGTTCTTGGAGAGACCCCTTGTGCTTTTGTGAAACTGAAAAAAGGGTGTTTTATGACTGATGAAGAAATTATCAAGTTTTGTGAAGATTGGCTGCAGGATTACATGGTTCCTAAGGCAGTAATCTTTGGTGATTTACCATTCAATTCTTCAGGGAAAATACAGAAATTTATACTTAGGGACAAGGTCAACAATGCAATGAAGTTGTGTCTACAAGTTGGGTGCAACTCAGTTGGCGAGCTGCCCACACCTTCATCCTAGTGGTGGGGATTCGAATTTCGATATATTCCCTCCCCACCATAAAAAAAAAAAAAACATTGAAATATGCATGCCTTAATAAAAATTGTCCTTTTTCAGTCTTGCAAAAACATT</genome_strand>
        <mrna_strand>GAAGGATCGCGCTGTTGACGTAGTCAAAACTGATGGGAAAACTATAAGCACACTTGAAATTGAAGGTGTTTTGATTAGGCATCCTATGGTTTTGGAAGTTGCAGTTGTAGCAAGATGTGATGATGTTCTTGGAGAGACCCCTTGTGCTTTTGTGAAACTGAAAAAAGGGTGTTTTATGACTGATGAAGAAATTATCAAGTTTTGTGAAGATTGGCTGCAGGATTACATGGTTCCTAAGGCAGTAATCTTTGGTGATTTACCATTCAATTCTTCAGGGAAAATACAGAAATTTATACTTAGGGACAAGGTCAACAATGCAATGAAGTTGTGTCTACAAGTTGGGTGCAACTCAGTTGGCGAGCTGCCCACACCTTCATCCTAGTGGTGGGGATTCGAATTTCGATATATTCCCTCCCCACCATAAAAAAAAAAAAAACATTGAAATATGCATGCCTTAATAAAAATTGTCCTTTTTCAGTCTTGCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E212743" ref_strand="+" ref_description="SGN-E212743 [cLEC-73-B22]">
      <seq>gattggtagtttgccctgcaaaccacgtaccattgacacctctaagttttttggaacgtgctgcatttgtttaccgcaaaaacatagccttaatttatggaaacataagttattcatgggaagaattacatggaagatgtatcaaccttgcatctgctctttctcaacttggagtttcatctggtgatgttgtggcaacggtggcacctaatgtagcagcacaatatgagctacattttggtgtaccaatggctggtgcagtcctttctgcactcaacacaatgctagatgccaccacattggctcaaaaactccaacaattggaggccaaaatcatttttgtatactctgatttcattgaactagtgcttcaagcacttgccattcttcaagaaaaagacaaatcttgtctaattgtcttaatccatgaaggaaacaatgtaacaaaaccaccagtgtcatcatcagggccatcaaaaattctggattaccaaacacttcttgaaatggggcagcctaatttcaagattatgcatccgaaaaatgaatttgatccgatttcgatcaattttacttctggatcaacagggaagcctaaaggggctgtgtatagccatagagctgcttatttgaatacaattgctgacatttttcgatacgaaatgggaaaaagccctgtttttctctggacagtggatatgtttcgatgcaacgggtggtgtctcccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="-" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="89423" stop="85507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89123" g_stop="88933" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88932" i_stop="86345" i_length="2588">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86344" g_stop="85807" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="729" r_length="538" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="-" ref_id="SGN-E212743" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212743" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89123" e_stop="88933"/>
          <exon e_start="86344" e_stop="85807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTGGTAGTTTGCCCTGCAAACCACGTACCATTGACACCTCTAAGTTTTTTGGAACGTGCTGCATTTGTTTACCGCAAAAACATAGCCTTAATTTATGGAAACATAAGTTATTCATGGGAAGAATTACATGGAAGATGTATCAACCTTGCATCTGCTCTTTCTCAACTTGGAGTTTCATCTGGTGATGTTGTAAGTCTAATTTCATCCTTTCACTTGCTCCTCCATCTTCAATATATATTTGTGTACTACACAAACATATTTATTCTGCTCATGCTTCAGACAATCTGAATAATTCTATATACACATATATAGGTGCGCCATTTATATAGCCGAGAGTAGTTGCACTTGATTTATCTCCATTCAAGATCTATGTTTTTTTTATTTTCTTTAAACTCTTTCGTAACATAAATATGATTAAGAACTCCCTGACGTGAAAATAATATTTTACACGTATAAACTAGACTAGAATTAGATCTAGTTCTTTGGACTTTAAATATACTATGATTTTGATCCTTTTAATTTCATGCATGCCAATTATTTTCTTTTAAGGCAAAAGTTAATTAGTAGAAGTGAGCCATTAGAGACTTGATATATTAACCAAGTCAACAGGCGCATTCATTCACCCAAATTAATTGATGCGTTGAAGAAGGGTTATTAATTATCATTTTTTTTTACGTTTACATTTACACTTATAATAAAAAGAAGAATCGACAACAAACTTTAATTCCTCCACTTAATTCTTAGTTGATAAAAGCATAATAATTATGTCCCTTGCGAAGATAGACTTGACTTACGTATATGGTTCTACTTCTCTCATATTTATTATCTCACGCATTGACTTGACCAGCTAGATGTTAAAGAATGAAAAAATTCATATCGATAATTAAAGAAATGAATGGTTAGATTTAAATAATTCTCTTATTTGAGATAGTTTTTAGGGTATGACTTACACCTAGCTGTTAGAACCAAATTTTAAAGTTGTCCACGCTTAAAATGTTCAAAAACCTGAGCTTGAGGTGGATGTTAAAGAATGAAAATTTTTTCATCGATGATTAATGAGATGAATAATCTTCTTATAAATCTAAGACAATTCTTTATCCTTTAAATTAATGTTTAGAGCATGATAAGTCCAAGATCTAATTTTACACTAACTACTTTATTAGTAAGTCATTGTATAAGATTATAGGAATATATGTTGAGGGGTCTTTTTCCATTAACAAACCATTTCTTGTCTTCTTACTACATATTCGAAACCATTTTGAGTGCTCATACTTGTAATAGTAACGACAAAACAGCCCCCTCGAGTTTCATTGCTCTTATATTTCCTTTGGCTTTCTCTCTATAAAACTCTGGAAAAACGTTCATAACTTGCGTAATGGTGTCAAAATTAGGGGCTGAATGAGGACAAATTCACAATGTCACGTAAAAACGATTAGTTAATTATAAGTCATGTAATATAGTAATGTAATTAGATGAAAATTTGTGTTGTCTTAACTCACATACTAAATATGTAATGAACACATAGATTATATATACTATATATTATAATATATACTAAGTACTAACAATATATATATATATATATTTATATATAAATTACTATTTCATGCTTTAAAAACGATAAAAATAGGAGCAATCATGTGTAACGGTGTGAATACACGTTTTGACTTCTTTTTTTCTTGTTTGAGTGCTTTATTATTTTTAAGAAAAAAGTTTCTATTTTCATTCTTTTTTATTTAACAAATGAGCTAGACCACAAGTCTTCGTCTCAAATTGTAATTAAATACGTGTCACATCAAATTTAATATTTTAGAGCAGAGCATATATGCACATGATGATACACCTTGAAGGGGGAATTTAATTCTTTTCTTATATTAGTGTTATATTATAATCAAAACTCCTTAGTACTTGTATCTTTTTTTCCCTCATTCTGCATGAGCCTGTCCTGGCTGTGATTTAAAATTGTACAATTTATTGACTTTGTCACGTTTAGCAATGTGTTAAAGACCCACGTTATGAAAAATAAATAAATTGATGACTAGGTACAATTGATATGCGTAATTACGACCAGAGGAAAACATCTAGATACATGGAACTTGCTCAATAGTACTAAATAAGTCAATGGACTTAAATATTGTTTGGAAGCTCTCTCGAAATCATATTATTTAATTTAGTTTGACATAAATATTGAATATACATAGATAGTTTGTTATGTCTCTCGTATAACAATGTTGGGGATGGAATATGGATGCACAATTAAAATTACGGTGTAACCTAATAGTTTTAGCTCTTTCTTATATACATGTTCAAATTCTAGTTAGTATTAAATTCGAACAGATAATACTCATATGTTCATTATTATTTTATCTAGTTAATATTAACAAATCAAGAAAGAGTTATTATTTACTTTTAATATCACTTTTCATCGAAAATCTTAGTAGCTCAATTGATTGGCTACTTGAACTCTCAGCTTGTTGATAAAAATTTGATTCTCCATATAGTAATCTACTCCCCATTTCTTTTTCCCCTTCCCCTTCCCCTGCCTTCAATTTTCCTTTTTTTTTCTTCTAAAAAGATAATATATATCACTCTTCATTGAATAATACAAGTTCTTAGATTATATTGTGAATCCATAAACTTCAAATTCTAGTTGTTACGCTGAGTCCAAACCTTCTTTCGTTTTTCTCTTTGCTCTTATTTGTAGCTTATATTGTCATACGTAACTAATTAAAACAAGCTTAATTTATGCGCTTATTAATCTTAACTAATACAAACAGGTGGCAACGGTGGCACCTAATGTAGCAGCACAATATGAGCTACATTTTGGTGTACCAATGGCTGGTGCAGTCCTTTCTGCACTCAACACAATGCTAGATGCCACCACATTGGCTCAAAAACTCCAACAATTGGAGGCCAAAATCATTTTTGTATACTCTGATTTCATTGAACTAGTGCTTCAAGCACTTGCCATTCTTCAAGAAAAAGACAAATCTTGTCTAATTGTCTTAATCCATGAAGGAAACAATGTAACAAAACCACCAGTGTCATCATCAGGGCCATCAAAAATTCTGGATTACCAAACACTTCTTGAAATGGGGCAGCCTAATTTCAAGATTATGCATCCGAAAAATGAATTTGATCCGATTTCGATCAATTTTACTTCTGGATCAACAGGGAAGCCTAAAGGGGCTGTGTATAGCCATAGAGCTGCTTATTTGAATACAATTGCTGACATTTTTCGATACGAAATGGGAAAAAGCCCTGTTTTTCTCTGGACAGTGGATATGTTTCGATGCAACGGGTGGTGTCTCCCCT</genome_strand>
        <mrna_strand>GATTGGTAGTTTGCCCTGCAAACCACGTACCATTGACACCTCTAAGTTTTTTGGAACGTGCTGCATTTGTTTACCGCAAAAACATAGCCTTAATTTATGGAAACATAAGTTATTCATGGGAAGAATTACATGGAAGATGTATCAACCTTGCATCTGCTCTTTCTCAACTTGGAGTTTCATCTGGTGATGTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCAACGGTGGCACCTAATGTAGCAGCACAATATGAGCTACATTTTGGTGTACCAATGGCTGGTGCAGTCCTTTCTGCACTCAACACAATGCTAGATGCCACCACATTGGCTCAAAAACTCCAACAATTGGAGGCCAAAATCATTTTTGTATACTCTGATTTCATTGAACTAGTGCTTCAAGCACTTGCCATTCTTCAAGAAAAAGACAAATCTTGTCTAATTGTCTTAATCCATGAAGGAAACAATGTAACAAAACCACCAGTGTCATCATCAGGGCCATCAAAAATTCTGGATTACCAAACACTTCTTGAAATGGGGCAGCCTAATTTCAAGATTATGCATCCGAAAAATGAATTTGATCCGATTTCGATCAATTTTACTTCTGGATCAACAGGGAAGCCTAAAGGGGCTGTGTATAGCCATAGAGCTGCTTATTTGAATACAATTGCTGACATTTTTCGATACGAAATGGGAAAAAGCCCTGTTTTTCTCTGGACAGTGGATATGTTTCGATGCAACGGGTGGTGTCTCCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E719348" ref_strand="+" ref_description="SGN-E719348 [FC07CC11]">
      <seq>gaactgaaaaagccacagtaaaaatgaagttcaatattgtatcacccgttgcactgtcttgtctctttttcttgttcctaacaggtactttagcacaaaatgccggttccattgtaacgcgggaattgttcgaacaaatgctgagttttaggaacaatgacgcatgtcctgccaaaggattctacacttatgatgcattcatagctgcagccaattcgtttccaggttttggtactgctggtgatgatactgcacgtaagaaggaaattgctgcctttttcggtcaaacatctcacgaaactaatggtggtagtgcaggaacattcactggaggatattgctttgttaagcaaatagagcagtcagacagatactatggcagaggacctatccaattgacacaccaatctaactacgaacgagctggacaaggtattggtgttggacaagagttagtgaacaaccctgatttagttgcgacagatcctataatatcattcaaaacagcaatatggttctggatgacagaacaggataataaaccatcatgccacaacgttatcattggacaatggacgccatcccctaaagatacagcagctaatagagttccagggtacggtgtcattaccaacatcattaacggtcaatttgaatgtgggatgggtccgaatactgcagcggaaagtcgaattggattttacaggaggtattgtggtatgttgaatgttcctactggtgaaaatttggactgtaacaatcaaaagaacttcgcccagggctaagcgtctttatttatatatagagagagaatgcaaattatgtttatgtattacgttgtgaagtctataatttatatttggatgtaatcaataaggggattctgtatgcccatttaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="93878" stop="95513"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94177" g_stop="94482" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94483" i_stop="94555" i_length="73">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94556" g_stop="94652" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="403" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94653" i_stop="94713" i_length="61">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94714" g_stop="95212" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="902" r_length="499" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E719348" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>902</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719348" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94177" e_stop="94482"/>
          <exon e_start="94556" e_stop="94652"/>
          <exon e_start="94714" e_stop="95212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTGAAAAAGCCAGAGGAAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCGAATACTGCAGCGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGTTGAATGTTCCTACTGGTGAAAATTTGGACTGTAACAATCAAAAGAACTTCGCCCAGGGCTAAGCGTCTTTATTTATATATAGAGAGAGAATGCAAATTATGTTTATGTATTACGTTGTGAAGTCTATAAGTTATATTTGGATGTAATCAATAAGGGGATTCTGTATGCCCATTTAGAAA</genome_strand>
        <mrna_strand>GAACTGAAAAAGCCACAGTAAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATG.........................................................................GTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACA.............................................................CCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCGAATACTGCAGCGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGTTGAATGTTCCTACTGGTGAAAATTTGGACTGTAACAATCAAAAGAACTTCGCCCAGGGCTAAGCGTCTTTATTTATATATAGAGAGAGAATGCAAATTATGTTTATGTATTACGTTGTGAAGTCTATAATTTATATTTGGATGTAATCAATAAGGGGATTCTGTATGCCCATTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E365494" ref_strand="+" ref_description="SGN-E365494 [cLPT-2-D10]">
      <seq>ccagaggaaaaatgaagttcaatattgtatcaccagttgcactgtcttgtctctttttcttgttcctaacaggtactttagcacaaaatgccggttccattgtaacgcgggaattgttcgaacaaatgctgagttttaggaacaatgacgcatgtcctgccaaaggattctacacttatgatgcattcatagctgcagccaattcgtttccagcttttggtactactggtgatgatactgcccgtaagaaggaaattgctgcctttttcggtcaaacatctcatgaaactaatggtggtagtgcaggaacattcactggaggatattgctttgttaggcaaatagatcagtcagatagatactatggcagaggacctatccaattgacacaccaatctaactatgaacgagctggacaaggtattggtgttggacaagacttagtgaacaaccctgatttagttgcgacagatcctataatatcattcaaaacagcaatatggttctggatgacagcacaggataataaaccatcatgccacaacgttatcattggacaatggacgccatcccctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="93889" stop="95197"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94189" g_stop="94482" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="294" r_length="294" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94483" i_stop="94555" i_length="73">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94556" g_stop="94652" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="391" r_length="97" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94653" i_stop="94713" i_length="61">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94714" g_stop="94899" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="577" r_length="186" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E365494" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94189" e_stop="94482"/>
          <exon e_start="94556" e_stop="94652"/>
          <exon e_start="94714" e_stop="94899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGAGGAAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAA</genome_strand>
        <mrna_strand>CCAGAGGAAAAATGAAGTTCAATATTGTATCACCAGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGCTTTTGGTACTACTGGTGATGATACTGCCCGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCATGAAACTAATG.........................................................................GTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAGGCAAATAGATCAGTCAGATAGATACTATGGCAGAGGACCTATCCAATTGACACA.............................................................CCAATCTAACTATGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGACTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGCACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E624600" ref_strand="+" ref_description="SGN-E624600 [GI|1236159]">
      <seq>cagaggaaaaatgaagttcaatgtatcaccagttgcactctcttgtctctttttcttgttcctaacagaaactttagcacaaaatgctggttcaattgtaacgagggaattattcgaacaaatgttgagttttaggaacaatgatgtatgtcctggcaaaggattctacacttatgatgcattcatagctgcagctaactcgtttccagcttttggtactactggtgatgataccgcccgtaagaaggaaatggctgcctttttcggtcaaacatctcacgaaactaatggtggtagtgcaggaacatttactggaggatattgctttgttaggcaaatagatcagtcagaaagatactatggcagaggacctatccaattgacacaccaatctaactacgaacgagctggacaaggtattggtgttggacaagacctagtgaacaaccctgatttagtagccacagatcctataatatcattcaaaacagcaatatggttctggatgacagcacaggataataagccatcatgccacaacgttatcattgggcaatggacgccatccgccgcagatacggcagctaatagagtgccagggtacggtgtcattaccaatatcattaacggtggacttgaatgcgggatgggtccgaatactgcagtggaaagtcgaattggattttacaggaggtattgtggtatgctgaatgttcccactggtgaaaacttggactgtaacaatcaaaggaacttcgcccagggctaagcgtcgttacatatatagaatgcaaattatgttatgtattactattactcgtggagattgttcagtctataagttatatttggatgtaatgaataaagggattctgtatgcccatttagaatagggagatatatttgtcttcttaaaaattaaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="93890" stop="95529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94190" g_stop="94482" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94483" i_stop="94555" i_length="73">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94556" g_stop="94652" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="387" r_length="97" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94653" i_stop="94713" i_length="61">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94714" g_stop="95213" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="892" r_length="505" r_score="0.882"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E624600" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>890</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E624600" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94190" e_stop="94482"/>
          <exon e_start="94556" e_stop="94652"/>
          <exon e_start="94714" e_stop="95213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGGAAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCGAATACTGCAGCGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGTTGAATGTTCCTACTGGTGAAAATTTGGACTGTAACAATCAAAAGAACTTCGCCCAGGGCTAAGCGTCTTTATTTATATATAGAG-AGAGAATG-CA--AATTA-TGTTTATGTATTACGTTGTGAAGTCTATAAGTTATATTTGGATGTAATCAATAAGGGGATTCTGTATGCCCATTTAGAAAA</genome_strand>
        <mrna_strand>CAGAGGAAAAATGAAGTTC-A-A-TGTATCACCAGTTGCACTCTCTTGTCTCTTTTTCTTGTTCCTAACAGAAACTTTAGCACAAAATGCTGGTTCAATTGTAACGAGGGAATTATTCGAACAAATGTTGAGTTTTAGGAACAATGATGTATGTCCTGGCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCTAACTCGTTTCCAGCTTTTGGTACTACTGGTGATGATACCGCCCGTAAGAAGGAAATGGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATG.........................................................................GTGGTAGTGCAGGAACATTTACTGGAGGATATTGCTTTGTTAGGCAAATAGATCAGTCAGAAAGATACTATGGCAGAGGACCTATCCAATTGACACA.............................................................CCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGACCTAGTGAACAACCCTGATTTAGTAGCCACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGCACAGGATAATAAGCCATCATGCCACAACGTTATCATTGGGCAATGGACGCCATCCGCCGCAGATACGGCAGCTAATAGAGTGCCAGGGTACGGTGTCATTACCAATATCATTAACGGTGGACTTGAATGCGGGATGGGTCCGAATACTGCAGTGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGCTGAATGTTCCCACTGGTGAAAACTTGGACTGTAACAATCAAAGGAACTTCGCCCAGGGCTAAGCGTCGTTACATATATAGAATGCAAATTATGTTATGTATTACTATTACTCGTGGAGATTGTTCAGTCTATAAGTTATATTTGGATGTAATGAATAAAGGGATTCTGTATGCCCATTTAGAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E297238" ref_strand="+" ref_description="SGN-E297238 [cLET-29-E11]">
      <seq>agaggaaaaatgaagttcaatattgtatcacccgttgcactgtcttgtctctttttcttgttcctaacaggtactttagcacaaaatgccggttccattgtaacgcgggaattgttcgaacaaatgctgagttttaggaacaatgacgcatgtcctgccaaaggattctacacttatgatgcattcatagctgcagccaattcgtttccaggttttggtactgctggtgatgatactgcacgtaagaaggaaattgctgcctttttcggtcaaacatctcacgaaactaatggtggtagtgcaggaacattcactggaggatattgctttgttaagcaaatagagcagtcagacagatactatggcagaggacctatccaattgacacaccaatctaactacgaacgagctggacaaggtattggtgttggacaagagttagtgaacaaccctgatttagttgcgacagatcctataatatcattcaaaacagcaatatggttctggatgacagaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="93891" stop="95141"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94191" g_stop="94482" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94483" i_stop="94555" i_length="73">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94556" g_stop="94652" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="389" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94653" i_stop="94713" i_length="61">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94714" g_stop="94841" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="517" r_length="128" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E297238" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94191" e_stop="94482"/>
          <exon e_start="94556" e_stop="94652"/>
          <exon e_start="94714" e_stop="94841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGAAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAAC</genome_strand>
        <mrna_strand>AGAGGAAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATG.........................................................................GTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACA.............................................................CCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E290011" ref_strand="+" ref_description="SGN-E290011 [cLET-5-E5]">
      <seq>agaggaaaaatgaagttcaatattgtatcacccgttgcactgtcttgtctctttttcttgttcctaacaggtactttagcacaaaatgccggttccattgtaacgcgggaattgttcgaacaaatgctgagttttaggaacaatgacgcatgtcctgccaaaggattctacacttatgatgcattcatagctgcagccaattcgtttccaggttttggtactgctggtgatgatactgcacgtaagaaggaaattgctgcctttttcggtcaaacatctcacgaaactaatggtggtagtgcaggaacattcactggaggatattgctttgttaagcaaatagagcagtcagacagatactatggcagaggacctatccaattgacacaccaatctaactacgaacgagctggacaaggtattggtgttggaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="93891" stop="95058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94191" g_stop="94482" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94483" i_stop="94555" i_length="73">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94556" g_stop="94652" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="389" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94653" i_stop="94713" i_length="61">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94714" g_stop="94758" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="434" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E290011" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94191" e_stop="94482"/>
          <exon e_start="94556" e_stop="94652"/>
          <exon e_start="94714" e_stop="94758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGAAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACA</genome_strand>
        <mrna_strand>AGAGGAAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATG.........................................................................GTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACA.............................................................CCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E744951" ref_strand="+" ref_description="SGN-E744951 [GI|19188]">
      <seq>ggaaaaatgaagttcaatattgtatcacccgttgcactgtcttgtctctttttcttgttcctaacaggtactttagcacaaaatgccggttccattgtaacgcgggaattgttcgaacaaatgctgagttttaggaacaatgacgcatgtcctgccaaaggattctacacttatgatgcattcatagctgcagccaattcgtttccaggttttggtactgctggtgatgatactgcacgtaagaaggaaattgctgcctttttcggtcaaacatctcacgaaactaatggtggtagtgcaggaacattcactggaggatattgctttgttaagcaaatagagcagtcagacagatactatggcagaggacctatccaattgacacaccaatctaactacgaacgagctggacaaggtattggtgttggacaagagttagtgaacaaccctgatttagttgcgacagatcctataatatcattcaaaacagcaatatggttctggatgacagaacaggataataaaccatcatgccacaacgttatcattggacaatggacgccatcccctaaagatacagcagctaatagagttccagggtacggtgtcattaccaacatcattaacggtcaatttgaatgtgggatgggtccaaatactgcagcggaaagtcgaattggattttacaggaggtattgtggtatgttgaatgttcctactggtgaaaatttggactgtaacaatcaaaagaacttcgcccagggctaagcgtctttatttatatatagagagagaatgcaaattatgtttatgtattacgttgtgaagtctataagttatatttggatgtaatcaataaggggattctgtatgcccatttagaaaaatggaagtttattttcagaaatactaaagttatatgattttgatcttttgttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="93894" stop="95568"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94194" g_stop="94482" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="289" r_length="289" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94483" i_stop="94555" i_length="73">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94556" g_stop="94652" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="386" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94653" i_stop="94713" i_length="61">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94714" g_stop="95268" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="941" r_length="555" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E744951" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>941</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E744951" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94194" e_stop="94482"/>
          <exon e_start="94556" e_stop="94652"/>
          <exon e_start="94714" e_stop="95268"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCGAATACTGCAGCGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGTTGAATGTTCCTACTGGTGAAAATTTGGACTGTAACAATCAAAAGAACTTCGCCCAGGGCTAAGCGTCTTTATTTATATATAGAGAGAGAATGCAAATTATGTTTATGTATTACGTTGTGAAGTCTATAAGTTATATTTGGATGTAATCAATAAGGGGATTCTGTATGCCCATTTAGAAAAATGGAAGTTTATTTTCAGAAATACTAAAGTTATATGATTTTGATCTTTTGTTATA</genome_strand>
        <mrna_strand>GGAAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATG.........................................................................GTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACA.............................................................CCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCAAATACTGCAGCGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGTTGAATGTTCCTACTGGTGAAAATTTGGACTGTAACAATCAAAAGAACTTCGCCCAGGGCTAAGCGTCTTTATTTATATATAGAGAGAGAATGCAAATTATGTTTATGTATTACGTTGTGAAGTCTATAAGTTATATTTGGATGTAATCAATAAGGGGATTCTGTATGCCCATTTAGAAAAATGGAAGTTTATTTTCAGAAATACTAAAGTTATATGATTTTGATCTTTTGTTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E293958" ref_strand="+" ref_description="SGN-E293958 [cLET-13-D9]">
      <seq>gaaaaatgaagttcaatattgtatcacccgttgcactgtcttgtctctttttcttgttcctaacaggtactttagcacaaaatgccggttccattgtaacgcgggaattgttcgaacaaatgctgagttttaggaacaatgacgcatgtcctgccaaaggattctacacttatgatgcattcatagctgcagccaattcgtttccaggttttggtactgctggtgatgatactgcacgtaagaaggaaattgctgcctttttcggtcaaacatctcacgaaactaatggtggtagtgcaggaacattcactggaggatattgctttgttaagcaaatagagcagtcagacagatactatggcagaggacctatccaattgacacaccaatctaactacnaacgagctggacaaggtattggtgttggacaagagttagtgaacaaccctgatttagttgcgacagatcctataatatcattcaaaacagcaatatggttctggatgacagaacaggataataaaccatcatgccacaacgttatcattggacaatggacgccatcccctaaagatacagcagctaatagagttccagggtacggtgtcattaccaacatcattaacggtcaatttgaatgtgggatgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="93895" stop="95278"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94195" g_stop="94482" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94483" i_stop="94555" i_length="73">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94556" g_stop="94652" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="385" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94653" i_stop="94713" i_length="61">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94714" g_stop="94978" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="650" r_length="265" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E293958" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293958" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94195" e_stop="94482"/>
          <exon e_start="94556" e_stop="94652"/>
          <exon e_start="94714" e_stop="94978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGT</genome_strand>
        <mrna_strand>GAAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATG.........................................................................GTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACA.............................................................CCAATCTAACTACNAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E286871" ref_strand="+" ref_description="SGN-E286871 [cLES-14-D22]">
      <seq>gaaaaatgaagttcaatattgtatcacccgttgcactgtcttgtctctttttcttgttcctaacaggtactttagcacaaaatgccggttccattgtaacgcgggaattgttcgaacaaatgctgagttttaggaacaatgacgcatgtcctgccaaaggattctacacttatgatgcattcatagctgcagccaattcgtttccaggttttggtactgctggtgatgatactgcacgtaagaaggaaattgctgcctttttcggtcaaacatctcacgaaactaatggtggtagtgcaggaacattcactggaggatattgctttgttaagcaaatagagcagtcagacagatactatggcagaggacctatccaattgacacaccaatctaactacgaacgagctggacaaggtattggtgttggacaagagttagtgaacaaccctgatttagttgcgacagatcctataatatcattcaaaacagcaatatggttctggatgacagaacaggataataaaccatcatgccacaacgttatcattggacaatggacgccatcccctaaagatacagcagctaatagagttccagggtacggtgtcattaccaacatcattaacggtcaatttgaatgtgggatgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="93895" stop="95278"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94195" g_stop="94482" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94483" i_stop="94555" i_length="73">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94556" g_stop="94652" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="385" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94653" i_stop="94713" i_length="61">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94714" g_stop="94978" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="650" r_length="265" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E286871" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286871" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94195" e_stop="94482"/>
          <exon e_start="94556" e_stop="94652"/>
          <exon e_start="94714" e_stop="94978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGT</genome_strand>
        <mrna_strand>GAAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATG.........................................................................GTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACA.............................................................CCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E294352" ref_strand="-" ref_description="SGN-E294352 [cLET-14-N20](-)">
      <seq>gaaaaatgaagttcaatattgtatcacccgatgcactgtcttgtctctttttcttgttcctaacaggtactttagcacaaaatgccggttccattgtaacgcgagaattgttcgaacaaatgctgagttttaggaacaatgacgcatgtcctgccaaaggattctacacttatgatgcattcatagctgcagccaattcgtttccaggttttgctactgctggtgatgatactgcacgtaagaaggaaattgctgcctttttcggtcaaacatctcacgaaactaacggtggtagtgcaggaacattcactggaagatattgctttgttaagcaaatagagcactctgacagatactatggcagaggacctatccaattgacacaccaatctaactacgaacgagctggacaaggtattggtgttggacaagagttagtgaacaaccctgatttagttgcgacagatcctataatatcattcaaaacagcaatatggttctggatgacagaacaggataataaaccatcatgccacaacggtatcattggaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="93895" stop="95181"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94195" g_stop="94482" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94483" i_stop="94555" i_length="73">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94556" g_stop="94652" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="385" r_length="97" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94653" i_stop="94713" i_length="61">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94714" g_stop="94881" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="553" r_length="168" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E294352" ref_strand="-">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294352" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="94195" e_stop="94482"/>
          <exon e_start="94556" e_stop="94652"/>
          <exon e_start="94714" e_stop="94881"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACA</genome_strand>
        <mrna_strand>GAAAAATGAAGTTCAATATTGTATCACCCGATGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGAGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGCTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAACG.........................................................................GTGGTAGTGCAGGAACATTCACTGGAAGATATTGCTTTGTTAAGCAAATAGAGCACTCTGACAGATACTATGGCAGAGGACCTATCCAATTGACACA.............................................................CCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGGTATCATTGGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E294351" ref_strand="+" ref_description="SGN-E294351 [cLET-14-N20]">
      <seq>gaaaaatgaagttcaatattgtatcacccgatgcactgtcttgtctctttttcttgttcctaacaggtactttagcacaaaatgccggttccattgtaacgcgagaattgttcgaacaaatgctgagttttaggaacaatgacgcatgtcctgccaaaggattctacacttatgatgcattcatagctgcagccaattcgtttccaggttttgctactgctggtgatgatactgcacgtaagaaggaaattgctgcctttttcggtcaaacatctcacgaaactaacggtggtagtgcaggaacattcactggaagatattgctttgttaagcaaatagagcactctgacagatactatggcagaggacctatccaattgacacaccaatctaactacgaacgagctggacaaggtattggtgttggacaagagttagtgaacaaccctgatttagttgcgacagatcctataatatcattcaaaacagcaatatggttctggatgacagaacaggataataaaccatcatgccacaacggtatcattggaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="93895" stop="95181"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94195" g_stop="94482" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94483" i_stop="94555" i_length="73">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94556" g_stop="94652" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="385" r_length="97" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94653" i_stop="94713" i_length="61">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94714" g_stop="94881" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="553" r_length="168" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E294351" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94195" e_stop="94482"/>
          <exon e_start="94556" e_stop="94652"/>
          <exon e_start="94714" e_stop="94881"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACA</genome_strand>
        <mrna_strand>GAAAAATGAAGTTCAATATTGTATCACCCGATGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGAGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGCTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAACG.........................................................................GTGGTAGTGCAGGAACATTCACTGGAAGATATTGCTTTGTTAAGCAAATAGAGCACTCTGACAGATACTATGGCAGAGGACCTATCCAATTGACACA.............................................................CCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGGTATCATTGGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E292875" ref_strand="+" ref_description="SGN-E292875 [cLET-11-D17]">
      <seq>gaaaaatgaagttcaatattgtatcacccgttgcactgtcttgtctctttttcttgttcctaacaggtactttagcacaaaatgccggttccattgtaacgcgggaattgttcgaacaaatgctgagttttaggaacaatgacgcatgtcctgccaaaggattctacacttatgatgcattcatagctgcagccaattcgtttccaggttttggtactgctggtgatgatactgcacgtaagaaggaaattgctgcctttttcggtcaaacatctcacgaaactaatggtggtagtgcaggaacattcactggaggatattgctttgttaagcaaatagagcagtcagacagatactatggcagaggacctatccaattgacacaccaatctaactacgaacgagctggacaaggtattggtgttggacaagagttagtgaacaaccctgatttagttgcgacagatcctataatatcattcaaaacagcaatatggttctggatgacagaacaggataataaacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="93895" stop="95155"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94195" g_stop="94482" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94483" i_stop="94555" i_length="73">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94556" g_stop="94652" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="385" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94653" i_stop="94713" i_length="61">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94714" g_stop="94855" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="527" r_length="142" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E292875" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292875" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94195" e_stop="94482"/>
          <exon e_start="94556" e_stop="94652"/>
          <exon e_start="94714" e_stop="94855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCA</genome_strand>
        <mrna_strand>GAAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATG.........................................................................GTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACA.............................................................CCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E293303" ref_strand="+" ref_description="SGN-E293303 [cLET-18-H17]">
      <seq>gaaaaatgaagttcaatattgtatcacccgttgcactgtcttgtctctttttcttgttcctaacaggtactttagcacaaaatgccggttccattgtaacgcgggaattgttcgaacaaatgctgagttttaggaacaatgacgcatgtcctgccaaaggattctacacttatgatgcattcatagctgcagccaattcgtttccaggttttggtactgctggtgatgatactgcacgtaagaaggaaattgctgcctttttcggtcaaacatctcacgaaactaatggtggtagtgcaggaacattcactggaggatattgctttgttaagcaaatagagcagtcagacagatactatggcagaggacctatccaattgacacaccaatctaactacgaacgagctggacaaggtattggtgttggacaagagttagtgaacaaccctgatttagttgcgacagatcctataatatcattcaaaacagcaatatggttctggatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="93895" stop="95136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94195" g_stop="94482" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94483" i_stop="94555" i_length="73">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94556" g_stop="94652" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="385" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94653" i_stop="94713" i_length="61">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94714" g_stop="94836" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="508" r_length="123" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E293303" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94195" e_stop="94482"/>
          <exon e_start="94556" e_stop="94652"/>
          <exon e_start="94714" e_stop="94836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGAC</genome_strand>
        <mrna_strand>GAAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATG.........................................................................GTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACA.............................................................CCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E391165" ref_strand="+" ref_description="SGN-E391165 [TUS-47-J16]">
      <seq>gaaaaatgaagttcaatattgtatcacccgttgcactgtcttgtctctttttcttgttcctaacaggtactttagcacaaaatgccggttccattgtaacgcgggaattgttcgaacaaatgctgagttttaggaacaatgacgcatgtcctgccaaaggattctacacttatgatgcattcatagctgcagccaattcgtttccaggttttggtactgctggtgatgatactgcacgtaagaaggaaattgctgcctttttcggtcaaacatctcacgaaactaatggtggtagtgcaggaacattcactggaggatattgctttgttaagcaaatagagcagtcagacagatactatggcagaggacctatccaattgacacaccaatctaactacgaacgagctggacaaggtattggtgttggagaagagttagtgaacaaccctgatttatttgcgacagatcctataatatcattcaaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="93895" stop="95116"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94195" g_stop="94482" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94483" i_stop="94555" i_length="73">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94556" g_stop="94652" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="385" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94653" i_stop="94713" i_length="61">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94714" g_stop="94816" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="488" r_length="103" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E391165" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391165" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94195" e_stop="94482"/>
          <exon e_start="94556" e_stop="94652"/>
          <exon e_start="94714" e_stop="94816"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACA</genome_strand>
        <mrna_strand>GAAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATG.........................................................................GTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACA.............................................................CCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGAGAAGAGTTAGTGAACAACCCTGATTTATTTGCGACAGATCCTATAATATCATTCAAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E373445" ref_strand="+" ref_description="SGN-E373445 [TUS-31-J16]">
      <seq>aaaaatgaagttcaatattgtatcacccgttgcactgtcttgtctctttttcttgttcctaacaggtactttagcacaaaatgccggttccattgtaacgcgggaattgttcgaacaaatgctgagttttaggaacaatgacgcatgtcctgccaaaggattctacacttatgatgcattcatagctgcagccaattcgtttccaggttttggtactgctggtgatgatactgcacgtaagaaggaaattgctgcctttttcggtcaaacatctcacgaaactaatggtggtagtgcaggaacattcactggaggatattgctttgttaagcaaatagagcagtcagacagatactatggcagaggacctatccaattgacacaccaatctaactacgaacgagctggacaaggtattggtgttggacaagagttagtgaacaaccctgatttagttgcgacagatcctataatatcattcaaaacagcaatatggttctggatgacagaacaggataataaaccatcatgccacaacgttatcattggacaatggacgccatcccctaaagatacagcagctaatagagttccagggtacggtgtcattaccaacatcattaacggtcaattttgaatgtgggatgggtccgaatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="93896" stop="95286"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94196" g_stop="94482" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94483" i_stop="94555" i_length="73">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94556" g_stop="94652" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="384" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94653" i_stop="94713" i_length="61">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94714" g_stop="94986" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="658" r_length="274" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E373445" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373445" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94196" e_stop="94482"/>
          <exon e_start="94556" e_stop="94652"/>
          <exon e_start="94714" e_stop="94986"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAA-TTTGAATGTGGGATGGGTCCGAATAC</genome_strand>
        <mrna_strand>AAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATG.........................................................................GTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACA.............................................................CCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTTGAATGTGGGATGGGTCCGAATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E290780" ref_strand="+" ref_description="SGN-E290780 [cLET-10-E15]">
      <seq>aaaaatgaagttcaatattgtatcacccgttgcactgtcttgtctctttttcttgttcctaacaggtactttagcacaaaatgccggttccattgtaacgcgggaattgttcgaacaaatgctgagttttaggaacaatgacgcatgtcctgccaaaggattctacacttatgatgcattcatagctgcagccaattcgtttccaggttttggtactgctggtgatgatactgcacgtaagaaggaaattgctgcctttttcggtcaaacatctcacgaaactaatggtggtagtgcaggaacattcactggaggatattgctttgttaagcaaatagagcagtcagacagatactatggcagaggacctatccaattgacacaccaatctaactacgaacgagctggacaaggtattggtgttggacaagagttagtgaacaaccctgatttagttgcgacagatcctataatatcattcaaaacagcaatatggttctggatgacagaacaggataataaaccatcatgccacaacgttatcattggacaatggacgccatcccctaaagatacagcagctaatagagttccagggtacggtgtcattaccaacatcattaacggtcaatttgaatgtgggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="93896" stop="95274"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94196" g_stop="94482" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94483" i_stop="94555" i_length="73">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94556" g_stop="94652" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="384" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94653" i_stop="94713" i_length="61">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94714" g_stop="94974" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="645" r_length="261" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E290780" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94196" e_stop="94482"/>
          <exon e_start="94556" e_stop="94652"/>
          <exon e_start="94714" e_stop="94974"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGAT</genome_strand>
        <mrna_strand>AAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATG.........................................................................GTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACA.............................................................CCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E293991" ref_strand="+" ref_description="SGN-E293991 [cLET-13-P9]">
      <seq>aaaaatgaagttcaatattgtatcacccgttgcactgtcttgactctttttcttgttcctaacaggtactttagcacaaaatgccggttccattgtaacgcgggaattgttcgaacaaatgctgagttttaggaacaatgacgcatgtactgccaaaggattctacacttatgatgcattcatagctgcagccaattcgtttccaggttttggtactgctggtgatgatactgcacgtaagaaggaaattgctgcctttttcggtcaaacatctcacgaaactaatggtggtagtgcaggaacattcactggaggatattgctttgttaagcaaatagagcagtcagacagatactatggcagaggacctatccaattgacacaccagtctaactacgaacgagctggacaaggtattggtgttggacaagagttagtgaacaaccctgatttagttgcgacagatcctataatatcattcaaaacagcaatatggttctggatgacagaacaggataataaaccatcatgccacaacgttatcattggacaatggacgccatcccctaaagatacagcagctaatagagttccagggtacggtgtcattaccaacatcattaacggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="93896" stop="95258"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94196" g_stop="94482" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94483" i_stop="94555" i_length="73">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94556" g_stop="94652" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="384" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94653" i_stop="94713" i_length="61">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94714" g_stop="94958" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="629" r_length="245" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E293991" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293991" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94196" e_stop="94482"/>
          <exon e_start="94556" e_stop="94652"/>
          <exon e_start="94714" e_stop="94958"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTC</genome_strand>
        <mrna_strand>AAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGACTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTACTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATG.........................................................................GTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACA.............................................................CCAGTCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E298472" ref_strand="+" ref_description="SGN-E298472 [cLET-41-M5]">
      <seq>aaaaatgaagttcaatattgtatcacccgttgcactgtcttgtctctttttcttgttcctaacaggtactttagcacaaaatgccggttccattgtaacgcgggaattgttcgaacaaatgctgagttttaggaacaatgacgcatgtcctgccaaaggattctacacttatgatgcattcatagctgcagccaattcgtttccaggttttggtactgctggtgatgatactgcacgtaagaaggaaattgctgcctttttcggtcaaacatctcacgaaactaatggtggtagtgcaggaacattcactggaggatattgctttgttaagcaaatagagcagtcagacagatactatggcaaaagacctatccaattgacacaccaatctaactacgaacgagctggacaaggtattggtgttggacaagagttagtgaacaaccctgatttagttgcgacagatcctataatatcattcaaaacagcaatatggttctggatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="93896" stop="95136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94196" g_stop="94482" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94483" i_stop="94555" i_length="73">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94556" g_stop="94652" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="384" r_length="97" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94653" i_stop="94713" i_length="61">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94714" g_stop="94836" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="507" r_length="123" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E298472" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298472" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94196" e_stop="94482"/>
          <exon e_start="94556" e_stop="94652"/>
          <exon e_start="94714" e_stop="94836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGAC</genome_strand>
        <mrna_strand>AAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATG.........................................................................GTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAAAAGACCTATCCAATTGACACA.............................................................CCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E292051" ref_strand="+" ref_description="SGN-E292051 [cLET-1-A5]">
      <seq>aaaaatgaagttcaatattgtatcacccgttgcactgtcttgtctctttttcttgttcctaacaggtactttagcacaaaatgccggttccattgtaacgcgggaattgttcgaacaaatgctgagttttaggaacaatgacgcatgtcctgccaaaggattctacacttatgatgcattcatagctgcagccaattcgtttccaggttttggtactgctggtgatgatactgcacgtaagaaggaaattgctgcctttttcggtcaaacatctcacgaaactaatggtggtagtgcaggaacattcactggaggatattgctttgttaagcaaatagagcagtcagacagatactatggcagaggacctatccaattgacacaccaatctaactacgaacgagctggacaaggtattggtgttggacaagagttagtgaacaaccctgatttagttgcgacagatcctataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="93896" stop="95103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94196" g_stop="94482" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94483" i_stop="94555" i_length="73">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94556" g_stop="94652" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="384" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94653" i_stop="94713" i_length="61">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94714" g_stop="94803" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="474" r_length="90" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E292051" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94196" e_stop="94482"/>
          <exon e_start="94556" e_stop="94652"/>
          <exon e_start="94714" e_stop="94803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAAT</genome_strand>
        <mrna_strand>AAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATG.........................................................................GTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACA.............................................................CCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E292949" ref_strand="+" ref_description="SGN-E292949 [cLET-11-N20]">
      <seq>aaaaatgaagttcaatattgtatcacccgttgcactgtcttgtctctttttcttgttcctaacaggtactttagcacaaaatgccggttccattgtaacgcgggaattgttcgaacaaatgctgagttttaggaacaatgacgcatgtcctgccaaaggattctacacttatgatgcattcatagctgcagccaattcgtttccaggttttggtactgctggtgatgatactgcacgtaagaaggaaattgctgcctttttcggtcaaacatctcacgaaactaatggtggtagtgcaggaacattcactggaggatattgctttgttaagcaaatagagcagtcagacagatactatggcagaggacctatccaattgacacaccaatctaactacgaacgagctggacaaggtattggtgttggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="93896" stop="95057"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94196" g_stop="94482" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94483" i_stop="94555" i_length="73">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94556" g_stop="94652" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="384" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94653" i_stop="94713" i_length="61">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94714" g_stop="94757" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="428" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E292949" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292949" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94196" e_stop="94482"/>
          <exon e_start="94556" e_stop="94652"/>
          <exon e_start="94714" e_stop="94757"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGAC</genome_strand>
        <mrna_strand>AAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATG.........................................................................GTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACA.............................................................CCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E296408" ref_strand="+" ref_description="SGN-E296408 [cLET-19-H6]">
      <seq>aaaaatgaagttcaatattgtatcacccgttgcactgtcttgtctctttttcttgttcctaacaggtactttagcacaaaatgccggttccattgtaacgcgggaattgttcgaacaaatgctgagttttaggaacaatgacgcatgtcctgccaaaggattctacacttatgatgcattcatagctgcagccaattcgtttccaggttttggtactgctggtgatgatactgcacgtaagaaggaaattgctgcctttttcggtcaaacatctcacgaaactaatggtggtagtgcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="93896" stop="94784"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94196" g_stop="94482" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94483" i_stop="94555" i_length="73">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94556" g_stop="94567" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="299" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E296408" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>299</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94196" e_stop="94482"/>
          <exon e_start="94556" e_stop="94567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAG</genome_strand>
        <mrna_strand>AAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATG.........................................................................GTGGTAGTGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E201230" ref_strand="+" ref_description="SGN-E201230 [cLEC-10-E12]">
      <seq>aaaatgaagttcaatattgtatcacccgttgcactgtcttgtctctttttcttgttcctaacaggtactttagcacaaaatgccggttccattgtaacgcgggaattgttcgaacaaatgctgagttttaggaacaatgacgcatgtcctgccaaaggattctacacttatgatgcattcatagctgcagccaattcgtttccaggttttggtactgctggtgatgatactgcacgtaagaaggaaattgctgcctttttcggtcaaacatctcacgaaactaatggtaatttggatcatccttcttagcattgtaatttataggtaacaattgaattatatcattcgctcttttgcaggtggtagtgcaggaacattcactggaggatattgctttgttaagcaaatagagcagtcagacagatactatggcagaggacctatccaattgacacagtaagacaattcaatagaatatcaacatttggaatcattagtaatattcttttttatgcagccaatctaactacgaacgagctggacaaggtattggtgttggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="93897" stop="95057"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94197" g_stop="94757" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="561" r_length="561" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E201230" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201230" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94197" e_stop="94757"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGAC</genome_strand>
        <mrna_strand>AAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E397151" ref_strand="+" ref_description="SGN-E397151 [TUS-45-G3]">
      <seq>aatgaagttcaatattgtatcacccgttgcactgtcttgtctctttttcttgttcctaacaggtactttagcacaaaatgccggttccattgtaacgcgggaattgttcgaacaaatgctgagttttaggaacaatgacgcatgtcctgccaaaggattctacacttatgatgcattcatagctgcagccaattcgtttccaggttttggtactgctggtgatgatactgcacgtaagaaggaaattgctgcctttttcggtcaaacatctcacgaaactaatggtggtagtgcaggaacattcactggaggatattgctttgttaagcaaatagagcagtcagacagatactatggcagaggacctatccaattgacacaccaatctaactacgaacgagctggacaaggtattggtgttggacaagagttagtgaacaaccctgatttagttgcgacagatcctataatatcattcaaaacagcaatatggttctggatgacagaacaggataataaaccatcatgccacaacgttatcattggacaatggacgccatcccctaaagatacagcagctaatagagttccagggtacggtgtcattaccaaaatcattaacggtccaattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="93899" stop="95263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94199" g_stop="94482" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94483" i_stop="94555" i_length="73">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94556" g_stop="94652" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="381" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94653" i_stop="94713" i_length="61">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94714" g_stop="94965" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="634" r_length="253" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E397151" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397151" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94199" e_stop="94482"/>
          <exon e_start="94556" e_stop="94652"/>
          <exon e_start="94714" e_stop="94965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGT-CAATTTGA</genome_strand>
        <mrna_strand>AATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATG.........................................................................GTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACA.............................................................CCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAAAATCATTAACGGTCCAATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E390130" ref_strand="+" ref_description="SGN-E390130 [TUS-17-M19]">
      <seq>atgaagttcaatattgtatcacccgttgcactgtcttgtctctttttcttgttcctaacaggtactttagcacaaaatgccggttccattgtaacgcgggaattgttcgaacaaatgctgagttttaggaacaatgacgcatgtcctgccaaaggattctacacttatgatgcattcatagctgcagccaattcgtttccaggttttggtactgctggtgatgatactgcacgtaagaaggaaattgctgcctttttcggtcaaacatctcacgaaactaatggtggtagtgcaggaacattcactggaggatattgctttgttaagcaaatagagcagtcagacagatactatggcagaggacctatccaattgacacaccaatctaactacgaacgagctggacaaggtattggtgttggacaagagttagtgaacaaccctgatttagttgcgacagatcctataatatcattcaaaacagcaatatggttctggatgacagaacaggataataaaccatcatgccacaacgttatcattggacaatggacgccatcccctaaagatacagcagctaatagagttccagggtacggtgtcattaccaacatcattaacggtcaatttgaatgtgggatgggtccgaatactgcagcggaaagtcgaattggattttacaggaggtattgtggtatgttgaaatgtcctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="93900" stop="95346"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94200" g_stop="94482" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94483" i_stop="94555" i_length="73">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94556" g_stop="94652" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="380" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94653" i_stop="94713" i_length="61">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94714" g_stop="95046" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="713" r_length="333" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E390130" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94200" e_stop="94482"/>
          <exon e_start="94556" e_stop="94652"/>
          <exon e_start="94714" e_stop="95046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCGAATACTGCAGCGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGTTGAATGTTCCTAC</genome_strand>
        <mrna_strand>ATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATG.........................................................................GTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACA.............................................................CCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCGAATACTGCAGCGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGTTGAAATGTCCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E390283" ref_strand="+" ref_description="SGN-E390283 [TUS-40-M19]">
      <seq>atgaaattcaatattgtatcacccgttgcactgtcttgtctctttttcttgttcctaacaagtactttagcacaaaatgccggttccattgtaacgcgggaattgttcgaacaaatgctgagttttaagaacaatgacgcatgtcctgccaaaggattctacacttatgatgcattcatagctgcagccaattcgtttccaggttttggtactgctggtgatgatactgcacgtaagaaggaaattgctgcctttttcggtcaaacatctcacgaaactaatggtggtagtgcaggaacattcactggaggatattgctttgttaagcaaatagagcagacacacagatactatggcagaggacctatccaattgacacaccaatctaactacgaacgagctggacaaggtattggtgttggacaagagttaatgaacaaccctgatttagttgcgacagatcctataatatcattcaaaacagcaatatggttctggatgacagaacaggataataaaccatcatgccacaacgttatcattggacaatggacgccatcccctaaagatacagcagctaatagagtttcagggtacggtgtcattaccaacatcattaacggtcaatttgaatgtgggatgggtccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="93900" stop="95281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94200" g_stop="94482" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94483" i_stop="94555" i_length="73">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94556" g_stop="94652" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="380" r_length="97" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94653" i_stop="94713" i_length="61">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94714" g_stop="94981" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="648" r_length="268" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E390283" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390283" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94200" e_stop="94482"/>
          <exon e_start="94556" e_stop="94652"/>
          <exon e_start="94714" e_stop="94981"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCG</genome_strand>
        <mrna_strand>ATGAAATTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAAGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAAGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATG.........................................................................GTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGACACACAGATACTATGGCAGAGGACCTATCCAATTGACACA.............................................................CCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAATGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTTCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E292007" ref_strand="+" ref_description="SGN-E292007 [cLET-7-H5]">
      <seq>atgaagttcaatattgtatcacccgttgcactgtcttgtctctttttcttgttcctaacaggtactttagcacaaaatgccggttccattgtaacgcgggaattgttcgaacaaatgctgagttttaggaacaatgacgcatgtcctgccaaaggattctacacttatgatgcattcatagctgcagccaattcgtttccaggttttggtactgctggtgatgatactgcacgtaagaaggaaattgctgcctttttcggtcaaacatctcacgaaactaatggtggtagtgcaggaacattcactggaggatattgctttgttaagcaaatagagcagtcagacagatactatggcagaggacctatccaattgacacaccaatctaactacgaacgagctggacaaggtattggtgttggacaagagttagtgaacaaccctgatttagttgcgacagatcctataatatcattcaaaacagcaatatggttctggatgacagaacaggataataaaccatcatgccacaacgttatcattggacaatggacgccatcccctaaagatacagcagctaatagagttccagggtacggtgtcattaccaacatcattaacggtcaatttgaatgtgggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="93900" stop="95275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94200" g_stop="94482" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94483" i_stop="94555" i_length="73">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94556" g_stop="94652" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="380" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94653" i_stop="94713" i_length="61">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94714" g_stop="94975" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="642" r_length="262" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E292007" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292007" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94200" e_stop="94482"/>
          <exon e_start="94556" e_stop="94652"/>
          <exon e_start="94714" e_stop="94975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATG</genome_strand>
        <mrna_strand>ATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATG.........................................................................GTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACA.............................................................CCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E390647" ref_strand="+" ref_description="SGN-E390647 [TUS-47-M20]">
      <seq>atgaagttcaatattgtatcacccgttgcactgtcttgtctctttttcttgttcctaacaggtactttagcacaaaatgccggttccattgtaacgcgggaattgttcgaacaaatgctgagttttaggaacaatgacgcatgtcctgccaaaggattctacacttatgatgcattcatagctgcagccaattcgtttccaggttttggtactgctggtgatgatactgcacgtaagaaggaaattgctgcctttttcggtcaaacatctcacgaaactaatggtggtagtgcaggaacattcactggaggatattgctttgttaagcaaatagagcagtcagacagatactatggcagaggacctatccaattgacacaccaatctaactacgaacgagctggacaaggtattggtgttggacaagagttagtgaacaaccctgatttagttgcgacagatcctataatatcattcaaaacagcaatatggttctggatgacagaacaggataataaaccatcatgccacaacgttatcattggaaaatggacgccatcccctaaaaatacagcaactaataaaattccagggtacggtgtcattaccacattcattaacggtcaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="93900" stop="95263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94200" g_stop="94482" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94483" i_stop="94555" i_length="73">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94556" g_stop="94652" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="380" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94653" i_stop="94713" i_length="61">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94714" g_stop="94963" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="630" r_length="250" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E390647" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94200" e_stop="94482"/>
          <exon e_start="94556" e_stop="94652"/>
          <exon e_start="94714" e_stop="94963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTT</genome_strand>
        <mrna_strand>ATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATG.........................................................................GTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACA.............................................................CCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGAAAATGGACGCCATCCCCTAAAAATACAGCAACTAATAAAATTCCAGGGTACGGTGTCATTACCACATTCATTAACGGTCAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E405655" ref_strand="+" ref_description="SGN-E405655 [PPI-1-O11]">
      <seq>tgaagttcaatgtatcaccagttgcactctcttgtctctttttcttgttcctaacagaaactttagcacaaaatgctggttcaattgtaacgagggaattattcgaacaaatgttgagttttaggaacaatgatgtatgtcctggcaaaggattctacacttatgatgcattcatagctgcagctaactcgtttccagcttttggtactactggtgatgataccgcccgtaagaaggaaatggctgcctttttcggtcaaacatctcacgaaactaatggtggtagtgcaggaacatttactggaggatattgctttgttaggcaaatagatcagtcggaaagatactatggcagaggacctatccaattgacacaccaatctaactacgaacgagctggacaagggtattggtgttggacaagacctagtgaacaaccctgatttagtagccacagatcctataatatcattcaaaacagcaatatggttctggatgacagcacaggataataagccatcatgccacaacgttatcattgggcaatggacgccatccgccgcagatacggcagctaatagagtgccagggtacgggtgtcattaccaatatcattaacggtggacttgaatgcgggatgggtccgaatactgcagtggaaagtcgaattggattttcaggaggtatttgtggtatgctgaatgttcccactggtgaaaacttggactgtaacaataaaggaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="93912" stop="95381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94201" g_stop="94482" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94483" i_stop="94555" i_length="73">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94556" g_stop="94652" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="376" r_length="97" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94653" i_stop="94713" i_length="61">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94714" g_stop="95081" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="745" r_length="369" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E405655" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E405655" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94201" e_stop="94482"/>
          <exon e_start="94556" e_stop="94652"/>
          <exon e_start="94714" e_stop="95081"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAA-GGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTAC-GGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCGAATACTGCAGCGGAAAGTCGAATTGGATTTTACAGGAGGTA-TTGTGGTATGTTGAATGTTCCTACTGGTGAAAATTTGGACTGTAACAATCAAAAGAACT</genome_strand>
        <mrna_strand>TGAAGTTC-A-A-TGTATCACCAGTTGCACTCTCTTGTCTCTTTTTCTTGTTCCTAACAGAAACTTTAGCACAAAATGCTGGTTCAATTGTAACGAGGGAATTATTCGAACAAATGTTGAGTTTTAGGAACAATGATGTATGTCCTGGCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCTAACTCGTTTCCAGCTTTTGGTACTACTGGTGATGATACCGCCCGTAAGAAGGAAATGGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATG.........................................................................GTGGTAGTGCAGGAACATTTACTGGAGGATATTGCTTTGTTAGGCAAATAGATCAGTCGGAAAGATACTATGGCAGAGGACCTATCCAATTGACACA.............................................................CCAATCTAACTACGAACGAGCTGGACAAGGGTATTGGTGTTGGACAAGACCTAGTGAACAACCCTGATTTAGTAGCCACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGCACAGGATAATAAGCCATCATGCCACAACGTTATCATTGGGCAATGGACGCCATCCGCCGCAGATACGGCAGCTAATAGAGTGCCAGGGTACGGGTGTCATTACCAATATCATTAACGGTGGACTTGAATGCGGGATGGGTCCGAATACTGCAGTGGAAAGTCGAATTGGATTTT-CAGGAGGTATTTGTGGTATGCTGAATGTTCCCACTGGTGAAAACTTGGACTGTAACAAT-AAAGGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E331909" ref_strand="+" ref_description="SGN-E331909 [cTOD-16-E7]">
      <seq>tgaagttcaatattgtatcacccgttgcactgtcttgtctctttttcttgttcctaacaggtactttagcacaaaatgccggttccattgtaacgcgggaattgttcgaacaaatgctgagttttaggaacaatgacgcatgtcctgccaaaggattctacacttatgatgcattcatagctgcagccaattcgtttccaggttttggtactgctggtgatgatactgcacgtaagaaggaaattgctgcctttttcggtcaaacatctcacgaaactaatggtggtagtgcaggaacattcactggaggatattgctttgttaagcaaatagagcagtcagacagatactatggcagaggacctatccaattgacacaccaatctaactacgaacgagctggacaaggtattggtgttggacaagagttagtgaacaaccctgatttagttgcgacagatcctataatatcattcaaaacagcaatatggttctggatgacagaacaggataataaaccatcatgccacaacgttatcattggacaatggacgccatcccctaaagatacagcagctaatagagttccagggtacggtgtcattaccaacatcattaacggtcaatttgaatgtgggatgggtccgaatactgcagcggaaagtcgaattggattttacaggaggtattgtggtatgttgaatgttcctactggtgaaaatttggactgtaacaatcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="93901" stop="95375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94201" g_stop="94482" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94483" i_stop="94555" i_length="73">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94556" g_stop="94652" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="379" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94653" i_stop="94713" i_length="61">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94714" g_stop="95075" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="741" r_length="362" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E331909" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94201" e_stop="94482"/>
          <exon e_start="94556" e_stop="94652"/>
          <exon e_start="94714" e_stop="95075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCGAATACTGCAGCGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGTTGAATGTTCCTACTGGTGAAAATTTGGACTGTAACAATCAAA</genome_strand>
        <mrna_strand>TGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATG.........................................................................GTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACA.............................................................CCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCGAATACTGCAGCGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGTTGAATGTTCCTACTGGTGAAAATTTGGACTGTAACAATCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E420098" ref_strand="+" ref_description="SGN-E420098 [STM-30-P13]">
      <seq>tgaagttcaatgtatcaccagttgcactctcttgtctctttttcttgttcctaacagaaactttagcacaaaatgctggttcaattgtaacgagggaattattcgaacaaatgttgagttttaggaacaatgatgtatgtcctggcaaaggattctacacttatgatgcattcatagctgcagctaactcgtttccagcttttggtactactggtgatgataccgcccgtaagaaggaaatggctgcctttttcggtcaaacatctcacgaaactaatggtggtagtgcaggaacatttactggaggatattgctttgttaggcaaatagatcagtcggaaagatactatggcagaggacctatccaattgacacaccaatctaactacgaacgagctggacaaggtattggtgttggacaagacctagtgaacaaccctgatttagtagccacagatcctataatatcattcaaaacagcaatatggttctggatgacagcacaggataataagccatcatgccacaacgttatcattgggcaatggacgccatccgccgcagatacggcagctaatagagtgccagggtacggtgtcattaccaatatcattaacggtggacttgaatgcgggatgggtccgaatactgcagtggaaagtcgaattggattttaattaagtattgtggtatgctgaatgttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="93912" stop="95343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94201" g_stop="94482" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94483" i_stop="94555" i_length="73">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94556" g_stop="94652" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="376" r_length="97" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94653" i_stop="94713" i_length="61">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94714" g_stop="95043" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="705" r_length="329" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E420098" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E420098" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94201" e_stop="94482"/>
          <exon e_start="94556" e_stop="94652"/>
          <exon e_start="94714" e_stop="95043"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCGAATACTGCAGCGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGTTGAATGTTCC</genome_strand>
        <mrna_strand>TGAAGTTC-A-A-TGTATCACCAGTTGCACTCTCTTGTCTCTTTTTCTTGTTCCTAACAGAAACTTTAGCACAAAATGCTGGTTCAATTGTAACGAGGGAATTATTCGAACAAATGTTGAGTTTTAGGAACAATGATGTATGTCCTGGCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCTAACTCGTTTCCAGCTTTTGGTACTACTGGTGATGATACCGCCCGTAAGAAGGAAATGGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATG.........................................................................GTGGTAGTGCAGGAACATTTACTGGAGGATATTGCTTTGTTAGGCAAATAGATCAGTCGGAAAGATACTATGGCAGAGGACCTATCCAATTGACACA.............................................................CCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGACCTAGTGAACAACCCTGATTTAGTAGCCACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGCACAGGATAATAAGCCATCATGCCACAACGTTATCATTGGGCAATGGACGCCATCCGCCGCAGATACGGCAGCTAATAGAGTGCCAGGGTACGGTGTCATTACCAATATCATTAACGGTGGACTTGAATGCGGGATGGGTCCGAATACTGCAGTGGAAAGTCGAATTGGATTTTA-ATTAAGTATTGTGGTATGCTGAATGTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E286948" ref_strand="+" ref_description="SGN-E286948 [cLES-6-M1]">
      <seq>tgaagtttaatattgtatcacccgttgcactgtcttgtctctttttcttgttcctaacaggtactttagcacaaaatgccggttccattgtaacgcgggaattgttcgaacaaatgctgagttttaggaacaatgacgcatgtcctgccaaaggattctacacttatgatgcattcatagctgcagccaattcgtttccaggttttggtactgctggtgatgatactgcacgtaagaaggaaattgctgcctttttcggccaaacatctcacgaaactaatggtggtagagcaggaacattcactggaagatattgctttgttaagcaaatatagcactcagacagatactatggcataggacctatccaattgacacaccaatctaactacgaacgagctggacaaggtattggtgttggacaagagttagtgaacaaccctgatttagttgcgacagatcctataatatcattcaaaacagcagtatgggtctggatgacagaacaggataataaaccatcatgccgcaacgttatcattggacaatggacgccatcccctaaagatacagcagctaatagagttccagggtacggtgtcattacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="93901" stop="95243"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94201" g_stop="94482" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94483" i_stop="94555" i_length="73">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94556" g_stop="94652" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="379" r_length="97" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94653" i_stop="94713" i_length="61">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94714" g_stop="94943" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="609" r_length="230" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E286948" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94201" e_stop="94482"/>
          <exon e_start="94556" e_stop="94652"/>
          <exon e_start="94714" e_stop="94943"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCA</genome_strand>
        <mrna_strand>TGAAGTTTAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGCCAAACATCTCACGAAACTAATG.........................................................................GTGGTAGAGCAGGAACATTCACTGGAAGATATTGCTTTGTTAAGCAAATATAGCACTCAGACAGATACTATGGCATAGGACCTATCCAATTGACACA.............................................................CCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAGTATGGGTCTGGATGACAGAACAGGATAATAAACCATCATGCCGCAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E401734" ref_strand="+" ref_description="SGN-E401734 [PPC-5-K17]">
      <seq>tgcagttcaatgtttcagcagttgcactctcttgtctctttttcttgttcctaacagaaactttagcacaaaatgctggttcaattgtaacgagggaattattcgaacaaatgttgagttttaggaacaatgatgtatgtcctggcaaaggattctacacttacgatgcattcatagctgcagctaactcctttccagcttttggtgctactggtgatgataccgcccgtaagaaggaaatggctgcctttttcggtcaaacatctcacgaaactaaaggtggtagtgcaggaacatttactggaggatattgctttgctaggcaaatagatcagtcagaaagatactatggcagaggacctattcaattgacacaccaatctaactaccaacgagctggacagggtattggtgttggacaagacctagctaataaccctgatttattagccacagatcctataatatcattcaaaacagcaatttggttctggatgacagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="93912" stop="95140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94201" g_stop="94482" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="0.897"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94483" i_stop="94555" i_length="73">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94556" g_stop="94652" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="376" r_length="97" r_score="0.938"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94653" i_stop="94713" i_length="61">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94714" g_stop="94840" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="503" r_length="127" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E401734" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E401734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94201" e_stop="94482"/>
          <exon e_start="94556" e_stop="94652"/>
          <exon e_start="94714" e_stop="94840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAA</genome_strand>
        <mrna_strand>TGCAGTTC-A-A-TGTTTCAGCAGTTGCACTCTCTTGTCTCTTTTTCTTGTTCCTAACAGAAACTTTAGCACAAAATGCTGGTTCAATTGTAACGAGGGAATTATTCGAACAAATGTTGAGTTTTAGGAACAATGATGTATGTCCTGGCAAAGGATTCTACACTTACGATGCATTCATAGCTGCAGCTAACTCCTTTCCAGCTTTTGGTGCTACTGGTGATGATACCGCCCGTAAGAAGGAAATGGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAAAG.........................................................................GTGGTAGTGCAGGAACATTTACTGGAGGATATTGCTTTGCTAGGCAAATAGATCAGTCAGAAAGATACTATGGCAGAGGACCTATTCAATTGACACA.............................................................CCAATCTAACTACCAACGAGCTGGACAGGGTATTGGTGTTGGACAAGACCTAGCTAATAACCCTGATTTATTAGCCACAGATCCTATAATATCATTCAAAACAGCAATTTGGTTCTGGATGACAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E335934" ref_strand="+" ref_description="SGN-E335934 [cTOE-6-M13]">
      <seq>gaagttcaatattgtatcacccgttgcactgtcttgtctctttttcttgttcctaacaggtactttagcacaaaatgccggttccattgtaacgcgggaattgttcgaacaaatgctgagttttaggaacaatgacgcatgtcctgccaaaggattctacacttatgatgcattcatagctgcagccaattcgtttccaggttttggtactgctggtgatgatactgcacgtaagaaggaaattgctgcctttttcggtcaaacatctcacgaaactaatggtggtagtgcaggaacattcactggaggatattgctttgttaagcaaatagagcagtcagacagatactatggcagaggacctatccaattgacacaccaatctaactacgaacgagctggacaaggtattggtgttggacaagagttagtgaacaaccctgatttagttgcgacagatcctataatatcattcaaaacagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="93902" stop="95118"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94202" g_stop="94482" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94483" i_stop="94555" i_length="73">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94556" g_stop="94652" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="378" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94653" i_stop="94713" i_length="61">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94714" g_stop="94818" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="483" r_length="105" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E335934" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94202" e_stop="94482"/>
          <exon e_start="94556" e_stop="94652"/>
          <exon e_start="94714" e_stop="94818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGC</genome_strand>
        <mrna_strand>GAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATG.........................................................................GTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACA.............................................................CCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E404146" ref_strand="+" ref_description="SGN-E404146 [PPC-12-F12]">
      <seq>gaagttcaatgtttcagcagttgcactctcttgtctctttttcttgttcctaacagaaactttagcacaaaatgctggttcaattgtaacgagggaattattcgaacaaatgttgagttttaggaacaatgatgtatgtcctggcaaaggattctacacttacgatgcattcatagctgcagctaactcctttccagcttttggtgctactggtgatgataccgcccgtaagaaggaaatggctgcctttttcggtcaaacatctcacgaaactaaaggtggtagtgcaggaacatttactggaggatattgctttgttaggcaaatagatcagtcagaaagatactatggcagaggacctattcaattgacacaccaatctaactacgaacgagctggacagggtattggtgttggacaagacctagttaataaccctgatttagtagccacagatcctataatatcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="93912" stop="95109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94202" g_stop="94482" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="278" r_length="278" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94483" i_stop="94555" i_length="73">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94556" g_stop="94652" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="375" r_length="97" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94653" i_stop="94713" i_length="61">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94714" g_stop="94809" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="471" r_length="96" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E404146" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E404146" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94202" e_stop="94482"/>
          <exon e_start="94556" e_stop="94652"/>
          <exon e_start="94714" e_stop="94809"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATT</genome_strand>
        <mrna_strand>GAAGTTC-A-A-TGTTTCAGCAGTTGCACTCTCTTGTCTCTTTTTCTTGTTCCTAACAGAAACTTTAGCACAAAATGCTGGTTCAATTGTAACGAGGGAATTATTCGAACAAATGTTGAGTTTTAGGAACAATGATGTATGTCCTGGCAAAGGATTCTACACTTACGATGCATTCATAGCTGCAGCTAACTCCTTTCCAGCTTTTGGTGCTACTGGTGATGATACCGCCCGTAAGAAGGAAATGGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAAAG.........................................................................GTGGTAGTGCAGGAACATTTACTGGAGGATATTGCTTTGTTAGGCAAATAGATCAGTCAGAAAGATACTATGGCAGAGGACCTATTCAATTGACACA.............................................................CCAATCTAACTACGAACGAGCTGGACAGGGTATTGGTGTTGGACAAGACCTAGTTAATAACCCTGATTTAGTAGCCACAGATCCTATAATATCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E299332" ref_strand="+" ref_description="SGN-E299332 [cLET-43-J8]">
      <seq>gaagttcaatattgtatcacccgttgcactgtcttgtctctttttcttgttcctaacaggtactttagcacaaaatgccggttccattgtaacgcgggaattgttcgaacaaatgctgagttttaggaacaatgacgcatgtcctgccaaaggattctacacttatgatgcattcatagctgcagccaattcgtttacaggttttggtactgctggtgatgatactgcacgtaagaaggaaattgctgcctttttctgtcaaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="93902" stop="94767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94202" g_stop="94467" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E299332" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>266</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94202" e_stop="94467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACAT</genome_strand>
        <mrna_strand>GAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTACAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCTGTCAAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E400570" ref_strand="+" ref_description="SGN-E400570 [PPC-1-B11]">
      <seq>gttcaatgtttcagcagttgcactctcttgtctctttttcttgttcctaacagaaactttagcacaaaatgctggttcaattgtaacgagggaattattcgaacaaatgttgagttttaggaacaatgatgtatgtcctggcaaaggattctacacttacgatgcattcatagctgcagctaactcctttccagcttttggtgctactggtgatgataccgcccgtaagaaggaaatggctgcctttttcggtcaaacatctcacgaaactaaaggtggtagtgcaggaacatttactggaggatattgctttgttaggcaaatagatcagtcagaaagatactatggcagaggacctattcaattgacacaccaatctaactacgaacgagctggacagggtattggtgttggacaagacctagttaataaccctgatttagtagccacagatcctataatatcattcaaaacagcaatttggttctggatgacagcacaggataataagccatcatgtcacagcgttatcattgggcaatggacgccatcccctgcagatacggcagctaatagagtgccagggtacggtgtcattaccaacatcattaacggtaaatttgaatgtgggatgggtcagaatactgcagtggaaagtcgaattggattttacaggaggtattgtggtatgttgaatgttcccactggtgaaaacttggactgtaacaatcaaaggaacttcgcccagggataagcgtcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="93912" stop="95402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94205" g_stop="94482" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="0.899"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94483" i_stop="94555" i_length="73">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94556" g_stop="94652" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="372" r_length="97" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94653" i_stop="94713" i_length="61">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94714" g_stop="95102" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="761" r_length="389" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E400570" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E400570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94205" e_stop="94482"/>
          <exon e_start="94556" e_stop="94652"/>
          <exon e_start="94714" e_stop="95102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCGAATACTGCAGCGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGTTGAATGTTCCTACTGGTGAAAATTTGGACTGTAACAATCAAAAGAACTTCGCCCAGGGCTAAGCGTCTT</genome_strand>
        <mrna_strand>GTTCA--A-TGTTTCAGCAGTTGCACTCTCTTGTCTCTTTTTCTTGTTCCTAACAGAAACTTTAGCACAAAATGCTGGTTCAATTGTAACGAGGGAATTATTCGAACAAATGTTGAGTTTTAGGAACAATGATGTATGTCCTGGCAAAGGATTCTACACTTACGATGCATTCATAGCTGCAGCTAACTCCTTTCCAGCTTTTGGTGCTACTGGTGATGATACCGCCCGTAAGAAGGAAATGGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAAAG.........................................................................GTGGTAGTGCAGGAACATTTACTGGAGGATATTGCTTTGTTAGGCAAATAGATCAGTCAGAAAGATACTATGGCAGAGGACCTATTCAATTGACACA.............................................................CCAATCTAACTACGAACGAGCTGGACAGGGTATTGGTGTTGGACAAGACCTAGTTAATAACCCTGATTTAGTAGCCACAGATCCTATAATATCATTCAAAACAGCAATTTGGTTCTGGATGACAGCACAGGATAATAAGCCATCATGTCACAGCGTTATCATTGGGCAATGGACGCCATCCCCTGCAGATACGGCAGCTAATAGAGTGCCAGGGTACGGTGTCATTACCAACATCATTAACGGTAAATTTGAATGTGGGATGGGTCAGAATACTGCAGTGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGTTGAATGTTCCCACTGGTGAAAACTTGGACTGTAACAATCAAAGGAACTTCGCCCAGGGATAAGCGTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E203974" ref_strand="+" ref_description="SGN-E203974 [cLEC-22-G18]">
      <seq>tcaatattgtatcacccgttgggctgtcttgtctctttttcttgttcctaacaggtactttagcacaaaatgccggttccattgtaacgcgggaattgttcgaacaaatgctgagttttaggaacaatgacgcatgtcctgccaaaggattctacacttatgatgcattcatagctgcagccaattcgtttccaggttttggtactgctggtgatgatactgcacgtaagaaggaaattgctgcctttttcggtcaaacatctcacgaaactaatggtggtagtgcaggaacattcactggaggatattgctttgttaagcaaatagagcagtcagacagatactatggcagaggacctatccaattgacacaccaatctaactacgaacgagctggacaaggtattggtgttggacaagagttagtgaacaaccctgatttagttgcgacagatcctataatatcattcaaaacagcaatatggttctggatgacagaacaggataataaaccatcatgccacaacgttatcattggacaatggacgccatcccctaaagatacagcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="93907" stop="95210"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94207" g_stop="94482" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="276" r_length="276" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94483" i_stop="94555" i_length="73">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94556" g_stop="94652" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="373" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94653" i_stop="94713" i_length="61">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94714" g_stop="94910" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="570" r_length="197" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E203974" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203974" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94207" e_stop="94482"/>
          <exon e_start="94556" e_stop="94652"/>
          <exon e_start="94714" e_stop="94910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAG</genome_strand>
        <mrna_strand>TCAATATTGTATCACCCGTTGGGCTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATG.........................................................................GTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACA.............................................................CCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E403356" ref_strand="+" ref_description="SGN-E403356 [PPC-10-K2]">
      <seq>caatgtatcaccagttgcactctcttgtctctttttcttgttcctaacagaaactttagcacaaaatgctggttcaattgtaacgagggaattattcgaacaaatgttgagttttaggaacaatgatgtatgtcctggcaaaggattctacacttatgatgcattcatagctgcagctaactcgtttccagcttttggtactactggtgatgataccgcccgtaagaaggaaatggctgcctttttcggtcaaacatctcacgaaactaatggtggtagtgcaggaacatttactggaggatattgctttgttaggcaaatagatcagtcggaaagatactatggcagaggacctatccaattgacacaccaatctaactacgaacgagctggacaaggtattggtgttggacaagacctagtgaacaaccctgatttagtagccacagatcctataatatcattcaaaacagcaatatggttctggatgacagcacaggataataagccatcatgccacaacgttatcattgggcaatggacgccatccgccgcagatacggcagctaatagagtgccagggtacggtgtcattaccaatatcattaacggtggacttgaatgcgggatgggtccgaatactgcagtggaaagtcgaattggattttacaggaggtattgtggtatgctgaatgttcccactggtgaaaacttggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="93912" stop="95363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94211" g_stop="94482" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94483" i_stop="94555" i_length="73">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94556" g_stop="94652" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="369" r_length="97" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94653" i_stop="94713" i_length="61">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94714" g_stop="95063" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="719" r_length="350" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E403356" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E403356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94211" e_stop="94482"/>
          <exon e_start="94556" e_stop="94652"/>
          <exon e_start="94714" e_stop="95063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCGAATACTGCAGCGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGTTGAATGTTCCTACTGGTGAAAATTTGGACT</genome_strand>
        <mrna_strand>CAATGTATCACCAGTTGCACTCTCTTGTCTCTTTTTCTTGTTCCTAACAGAAACTTTAGCACAAAATGCTGGTTCAATTGTAACGAGGGAATTATTCGAACAAATGTTGAGTTTTAGGAACAATGATGTATGTCCTGGCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCTAACTCGTTTCCAGCTTTTGGTACTACTGGTGATGATACCGCCCGTAAGAAGGAAATGGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATG.........................................................................GTGGTAGTGCAGGAACATTTACTGGAGGATATTGCTTTGTTAGGCAAATAGATCAGTCGGAAAGATACTATGGCAGAGGACCTATCCAATTGACACA.............................................................CCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGACCTAGTGAACAACCCTGATTTAGTAGCCACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGCACAGGATAATAAGCCATCATGCCACAACGTTATCATTGGGCAATGGACGCCATCCGCCGCAGATACGGCAGCTAATAGAGTGCCAGGGTACGGTGTCATTACCAATATCATTAACGGTGGACTTGAATGCGGGATGGGTCCGAATACTGCAGTGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGCTGAATGTTCCCACTGGTGAAAACTTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E402275" ref_strand="+" ref_description="SGN-E402275 [PPC-7-C4]">
      <seq>cagcagttgcactctcttgtctctttttcttgttcctaacagaaactttagcacaaaatgctggttcaattgtaacgagggaattattcgaacaaatgttgagttttaggaacaatgatgtatgtcctggcaaaggattctacacttacgatgcattcatagctgcagctaactcctttccagcttttggtgctactggtgatgataccgcccgtaagaaggaaatggctgcctttttcggtcaaacatctcacgaaactaaaggtggtagtgcaggaacatttactggaggatattgctttgttaggcaaatagatcagtcagaaagatactatggcagaggacctattcaattgacacaccaatctaacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="93919" stop="94956"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94219" g_stop="94482" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94483" i_stop="94555" i_length="73">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94556" g_stop="94652" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="361" r_length="97" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94653" i_stop="94713" i_length="61">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94714" g_stop="94725" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="373" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E402275" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E402275" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94219" e_stop="94482"/>
          <exon e_start="94556" e_stop="94652"/>
          <exon e_start="94714" e_stop="94725"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTA</genome_strand>
        <mrna_strand>CAGCAGTTGCACTCTCTTGTCTCTTTTTCTTGTTCCTAACAGAAACTTTAGCACAAAATGCTGGTTCAATTGTAACGAGGGAATTATTCGAACAAATGTTGAGTTTTAGGAACAATGATGTATGTCCTGGCAAAGGATTCTACACTTACGATGCATTCATAGCTGCAGCTAACTCCTTTCCAGCTTTTGGTGCTACTGGTGATGATACCGCCCGTAAGAAGGAAATGGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAAAG.........................................................................GTGGTAGTGCAGGAACATTTACTGGAGGATATTGCTTTGTTAGGCAAATAGATCAGTCAGAAAGATACTATGGCAGAGGACCTATTCAATTGACACA.............................................................CCAATCTAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E338705" ref_strand="+" ref_description="SGN-E338705 [cTOE-21-E11]">
      <seq>ccgttgcactgtcttgtctgtttttcttgttcctaacaggtactttagcacaaaatgccggttccattgtaacgcgggaattgttcgaacaaatgctgagttttaggaacaatgacgcatgtcctgccaaaggattctacacttatgatgcattcatagctgcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="93922" stop="94686"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94222" g_stop="94386" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E338705" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>165</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338705" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94222" e_stop="94386"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAG</genome_strand>
        <mrna_strand>CCGTTGCACTGTCTTGTCTGTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E400894" ref_strand="+" ref_description="SGN-E400894 [PPC-2-O12]">
      <seq>tctcttgtctctttttcttgttcctaacagaaactttagcacaaaatgctggttcaattgtaacgagggaattattcgaacaaatgttgagttttaggaacaatgatgtatgtcctggcaaaggattctacacttacgatgcattcatagctgcagctaactcctttccagcttttggtgctactggtgatgataccgcccgtaagaaggaaatggctgcctttttcggtcaaacatctcacgaaactaaaggtggtagtgcaggaacatttactggaggatattgctttgttaggccaatagatcagtcagaaagatactatggcagaggacctattcaattgacacaccaatctaactacgaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="93931" stop="95031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94231" g_stop="94482" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94483" i_stop="94555" i_length="73">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94556" g_stop="94652" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="349" r_length="97" r_score="0.938"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94653" i_stop="94713" i_length="61">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94714" g_stop="94731" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="367" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E400894" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E400894" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94231" e_stop="94482"/>
          <exon e_start="94556" e_stop="94652"/>
          <exon e_start="94714" e_stop="94731"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACG</genome_strand>
        <mrna_strand>TCTCTTGTCTCTTTTTCTTGTTCCTAACAGAAACTTTAGCACAAAATGCTGGTTCAATTGTAACGAGGGAATTATTCGAACAAATGTTGAGTTTTAGGAACAATGATGTATGTCCTGGCAAAGGATTCTACACTTACGATGCATTCATAGCTGCAGCTAACTCCTTTCCAGCTTTTGGTGCTACTGGTGATGATACCGCCCGTAAGAAGGAAATGGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAAAG.........................................................................GTGGTAGTGCAGGAACATTTACTGGAGGATATTGCTTTGTTAGGCCAATAGATCAGTCAGAAAGATACTATGGCAGAGGACCTATTCAATTGACACA.............................................................CCAATCTAACTACGAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E289391" ref_strand="+" ref_description="SGN-E289391 [cLET-3-G9]">
      <seq>aacaatgacgcatgtcctgccaaaggattctacacttatgatgcattcatagctgcagccaattcgtttccaggttttggtactgctggtgatgatactgcacgtaagaaggaaattgctgcctttttcggtcaaacatctcacgaaactaatggtggtagtgcaggaacattcactggaggatattgctttgttaagcaaatagagcagtcagacagatactatggcagaggacctatccaattgacacaccaatctaactacgaacgagctggacaaggtattggtgttggacaagagttagtgaacaaccctgatttagttgcgacagatcctataatatcattcaaaacagcaatatggttctggatgacagaacaggataataaaccatcatgccacaacgttatcattggacaatggacgccatcccctaaagatacagcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="94029" stop="95211"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94329" g_stop="94482" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94483" i_stop="94555" i_length="73">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94556" g_stop="94652" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="251" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94653" i_stop="94713" i_length="61">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94714" g_stop="94911" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="449" r_length="198" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E289391" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289391" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94329" e_stop="94482"/>
          <exon e_start="94556" e_stop="94652"/>
          <exon e_start="94714" e_stop="94911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGC</genome_strand>
        <mrna_strand>AACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATG.........................................................................GTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACA.............................................................CCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E390129" ref_strand="+" ref_description="SGN-E390129 [TUS-17-M19](-)">
      <seq>tgccaaaggattctacacttatgatgcattcatagctgcagccaattcgtttccaggttttggtactgctggtgatgatactgcacgtaagaaggaaattgctgcctttttcggtcaaacatctcacgaaactaatggtggtagtgcaggaacattcactggaggatattgctttgttaagcaaatagagcagtcagacagatactatggcagaggacctatccaattgacacaccaatctaactacgaacgagctggacaaggtattggtgttggacaagagttagtgaacaaccctgatttagttgcgacagatcctataatatcattcaaaacagcaatatggttctggatgacagaacaggataataaaccatcatgccacaacgttatcattggacaatggacgccatcccctaaagatacagcagctaatagagttccagggtacggtgtcattaccaacatcattaacggtcaatttgaatgtgggatgggtccgaatactgcagcggaaagtcgaattggattttacaggaggtattgtggtatgttgaatgttcctactggtgaaaatttggactgtaacaatcaaaagaacttcgcccagggctaagcgtctttatttatatatagagagagaatgcaaattatgtttatgtattacgttgtgaagtctataagttatatttggatgtaatcaataaggggattctgtatgcccatttagaaaaatggaagtttattttcagaaatactaaagttatatgattttgatcttttgttataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="94046" stop="95570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94346" g_stop="94482" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94483" i_stop="94555" i_length="73">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94556" g_stop="94652" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="234" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94653" i_stop="94713" i_length="61">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94714" g_stop="95277" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="798" r_length="564" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E390129" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>798</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390129" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94346" e_stop="94482"/>
          <exon e_start="94556" e_stop="94652"/>
          <exon e_start="94714" e_stop="95277"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCGAATACTGCAGCGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGTTGAATGTTCCTACTGGTGAAAATTTGGACTGTAACAATCAAAAGAACTTCGCCCAGGGCTAAGCGTCTTTATTTATATATAGAGAGAGAATGCAAATTATGTTTATGTATTACGTTGTGAAGTCTATAAGTTATATTTGGATGTAATCAATAAGGGGATTCTGTATGCCCATTTAGAAAAATGGAAGTTTATTTTCAGAAATACTAAAGTTATATGATTTTGATCTTTTGTTATAAATTATGTT</genome_strand>
        <mrna_strand>TGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATG.........................................................................GTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACA.............................................................CCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCGAATACTGCAGCGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGTTGAATGTTCCTACTGGTGAAAATTTGGACTGTAACAATCAAAAGAACTTCGCCCAGGGCTAAGCGTCTTTATTTATATATAGAGAGAGAATGCAAATTATGTTTATGTATTACGTTGTGAAGTCTATAAGTTATATTTGGATGTAATCAATAAGGGGATTCTGTATGCCCATTTAGAAAAATGGAAGTTTATTTTCAGAAATACTAAAGTTATATGATTTTGATCTTTTGTTATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E373444" ref_strand="+" ref_description="SGN-E373444 [TUS-31-J16](-)">
      <seq>gcctttttcggtcaaacatctcacgaaactaatggtggtagtgcaggaacattcactggaggatattgctttgttaagcaaatagagcagtcagacagatactatggcagaggacctatccaattgacacaccaatctaactacgaacgagctggacaaggtattggtgttggacaagagttagtgaacaaccctgatttagttgcgacagatcctataatatcattcaaaacagcaatatggttctggatgacagaacaggataataaaccatcatgccacaacgttatcattggacaatggacgccatcccctaaagatacagcagctaatagagttccagggtacggtgtcattaccaacatcattaacggtcaatttgaatgtgggatgggtccgaatactgcagcggaaagtcgaattggattttacaggaggtattgtggtatgttgaatgttcctactggtgaaaatttggactgtaacaatcaaaagaacttcgcccagggctaagcgtctttatttatatatagagagagaatgcaaattatgtttatgtattacgttgtgaagtctataagttatatttggatgtaatcaataaggggattctgtatgcccatttagaaaaatggaagtttattttcagaaatactaaagttatatgattttgatctttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="94149" stop="95561"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94449" g_stop="94482" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94483" i_stop="94555" i_length="73">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94556" g_stop="94652" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="131" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94653" i_stop="94713" i_length="61">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94714" g_stop="95270" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="688" r_length="557" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E373444" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373444" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94449" e_stop="94482"/>
          <exon e_start="94556" e_stop="94652"/>
          <exon e_start="94714" e_stop="95270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCGAATACTGCAGCGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGTTGAATGTTCCTACTGGTGAAAATTTGGACTGTAACAATCAAAAGAACTTCGCCCAGGGCTAAGCGTCTTTATTTATATATAGAGAGAGAATGCAAATTATGTTTATGTATTACGTTGTGAAGTCTATAAGTTATATTTGGATGTAATCAATAAGGGGATTCTGTATGCCCATTTAGAAAAATGGAAGTTTATTTTCAGAAATACTAAAGTTATATGATTTTGATCTTTTGTTATAAA</genome_strand>
        <mrna_strand>GCCTTTTTCGGTCAAACATCTCACGAAACTAATG.........................................................................GTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACA.............................................................CCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCGAATACTGCAGCGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGTTGAATGTTCCTACTGGTGAAAATTTGGACTGTAACAATCAAAAGAACTTCGCCCAGGGCTAAGCGTCTTTATTTATATATAGAGAGAGAATGCAAATTATGTTTATGTATTACGTTGTGAAGTCTATAAGTTATATTTGGATGTAATCAATAAGGGGATTCTGTATGCCCATTTAGAAAAATGGAAGTTTATTTTCAGAAATACTAAAGTTATATGATTTTGATCTTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E391351" ref_strand="+" ref_description="SGN-E391351 [TUS-47-J16](-)">
      <seq>aaactaatggtggtagtgcagggaacattcactggaggatattgctttgttaagcaaatagagcagtcagacagatactatggcagaggacctatccaattgacacaccaatctaactacgaacgagctggacaaggtattggtgttggacaagagttagtgaacaaccctgatttagttgcgacagatcctataatatcattcaaaacagcaatatggttctggatgacagaacaggataataaaccatcatgccacaacgttatcattggacaatggacgccatcccctaaagatacagcagctaatagagttccagggtacggtgtcattaccaacatcattaacggtcaatttgaatgtgggatgggtccgaatactgcagcggaaagtcgaattggattttacaggaggtattgtggtatgttgaatgttcctactggtgaaaatttggactgtaacaatcaaaagaacttcgcccagggctaagcgtctttatttatatatagagagagaatgcaaattatgtttatgtattacgttgtgaagtctataagttatatttggatgtaatcaataaggggattctgtatgcccatttagaaaaatggaagtttattttcagaaatactaaagttatatgattttgatcttttgttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="94255" stop="95570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94474" g_stop="94482" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94483" i_stop="94555" i_length="73">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94556" g_stop="94652" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="107" r_length="98" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94653" i_stop="94713" i_length="61">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94714" g_stop="95279" g_length="566"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="673" r_length="566" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E391351" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94474" e_stop="94482"/>
          <exon e_start="94556" e_stop="94652"/>
          <exon e_start="94714" e_stop="95279"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCA-GGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCGAATACTGCAGCGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGTTGAATGTTCCTACTGGTGAAAATTTGGACTGTAACAATCAAAAGAACTTCGCCCAGGGCTAAGCGTCTTTATTTATATATAGAGAGAGAATGCAAATTATGTTTATGTATTACGTTGTGAAGTCTATAAGTTATATTTGGATGTAATCAATAAGGGGATTCTGTATGCCCATTTAGAAAAATGGAAGTTTATTTTCAGAAATACTAAAGTTATATGATTTTGATCTTTTGTTATAAATTATGTTGA</genome_strand>
        <mrna_strand>AAACTAATG.........................................................................GTGGTAGTGCAGGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACA.............................................................CCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCGAATACTGCAGCGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGTTGAATGTTCCTACTGGTGAAAATTTGGACTGTAACAATCAAAAGAACTTCGCCCAGGGCTAAGCGTCTTTATTTATATATAGAGAGAGAATGCAAATTATGTTTATGTATTACGTTGTGAAGTCTATAAGTTATATTTGGATGTAATCAATAAGGGGATTCTGTATGCCCATTTAGAAAAATGGAAGTTTATTTTCAGAAATACTAAAGTTATATGATTTTGATCTTTTGTTAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E285209" ref_strand="+" ref_description="SGN-E285209 [cLER-20-L21]">
      <seq>tgcaggaacattcactggaggatattgctttgttaagcaaatagagcagtcagacagatactatggcagaggacctatccaattgacacaccaatctaactacgaacgagctggacaaggtattggtgttggacaagagttagtgaacaaccctgatttagttgcgacagatcctataatatcattcaaaacagcaatatggttctggatgacagaacaggataataaaccatcatgccacaacgttatcattggacaatggacgccatcccctaaagatacagcagctaatagagttccagggtacggtgtcattaccaacatcattaacggtcaatttgaatgtgggatgggtccgaatactgcagcggaaagtcgaattggattttacaggaggtattgtggtatgttgaatgttcctactggtgaaaatttggactgtaacaatcaaaagaacttcgcccagggctaagcgtctttatttatatatagagagagaatgcaaattatgtttatgtattacgttgtgaagtctataagttatatttggatgtaatcaataaggggattctgtatgcccatttaaaaaaatggaaagttattttcagaaatactaaagttatatgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="94263" stop="95550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94563" g_stop="94652" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94653" i_stop="94713" i_length="61">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94714" g_stop="95249" g_length="536"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="626" r_length="536" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="627" polyA_stop="637"/>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E285209" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94563" e_stop="94652"/>
          <exon e_start="94714" e_stop="95249"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCGAATACTGCAGCGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGTTGAATGTTCCTACTGGTGAAAATTTGGACTGTAACAATCAAAAGAACTTCGCCCAGGGCTAAGCGTCTTTATTTATATATAGAGAGAGAATGCAAATTATGTTTATGTATTACGTTGTGAAGTCTATAAGTTATATTTGGATGTAATCAATAAGGGGATTCTGTATGCCCATTTAGAAAAATGGAAGTTTATTTTCAGAAATACTAAAGTTATATG</genome_strand>
        <mrna_strand>TGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACA.............................................................CCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCGAATACTGCAGCGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGTTGAATGTTCCTACTGGTGAAAATTTGGACTGTAACAATCAAAAGAACTTCGCCCAGGGCTAAGCGTCTTTATTTATATATAGAGAGAGAATGCAAATTATGTTTATGTATTACGTTGTGAAGTCTATAAGTTATATTTGGATGTAATCAATAAGGGGATTCTGTATGCCCATTTAAAAAAATGGAAAGTTATTTTCAGAAATACTAAAGTTATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E210977" ref_strand="+" ref_description="SGN-E210977 [cLEC-69-D14]">
      <seq>aacattcactggaggatattgctttgttaagcaaatagagcagtcagacagatactatggcagaggacctatccaattgacacaccaatctaactacgaacgagctggacaaggtattggtgttggacaagagttagtgaacaaccctgatttagttgcgacagatcctataatatcattcaaaacagcaatatggttctggatgacagaacaggataataaaccatcatgccacaacgttatcattggacaatggacgccatcccctaaagatacagcagctaatagagttccagggtacggtgtcattaccaacatcattaacggtcaatttgaatgtgggatgggtccgaatactgcagcggaaagtcgaattggattttacaggaggtattgtggtatgttgaatgttcctactggtgaaaatttggactgtaacaatcaaaagaacttcgcccagggctaagcgtctttatttatatatagagagagaatgcaaattatgtttatgtattacgttgtgaagtctataagttatatttggatgtaatcaataaggggattctgtatgcccatttagaaaaatggaagtttattttcagaaaaaaaaaaaaaaaaaaaaaactcgagactagttctccggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="94269" stop="95541"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94569" g_stop="94652" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94653" i_stop="94713" i_length="61">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94714" g_stop="95233" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="604" r_length="520" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="605" polyA_stop="625"/>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E210977" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94569" e_stop="94652"/>
          <exon e_start="94714" e_stop="95233"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCGAATACTGCAGCGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGTTGAATGTTCCTACTGGTGAAAATTTGGACTGTAACAATCAAAAGAACTTCGCCCAGGGCTAAGCGTCTTTATTTATATATAGAGAGAGAATGCAAATTATGTTTATGTATTACGTTGTGAAGTCTATAAGTTATATTTGGATGTAATCAATAAGGGGATTCTGTATGCCCATTTAGAAAAATGGAAGTTTATTTTCAGAA</genome_strand>
        <mrna_strand>AACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACA.............................................................CCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCGAATACTGCAGCGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGTTGAATGTTCCTACTGGTGAAAATTTGGACTGTAACAATCAAAAGAACTTCGCCCAGGGCTAAGCGTCTTTATTTATATATAGAGAGAGAATGCAAATTATGTTTATGTATTACGTTGTGAAGTCTATAAGTTATATTTGGATGTAATCAATAAGGGGATTCTGTATGCCCATTTAGAAAAATGGAAGTTTATTTTCAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E397237" ref_strand="+" ref_description="SGN-E397237 [TUS-45-G3](-)">
      <seq>caattgacacaccaatttaactacgaacgagctggacaaggtattggtgttggacaagagttagtgaacaaccctgatttagttgcgacagatcctataatatcattcaaaacagcaatatggttctggatgacagaacaggataataaaccatcatgccacaacgttatcattggacaatggacgccatcccctaaagatacagcagctaatagagttccagggtacggtgtcattaccaacatcattaacggtcaatttgaatgtgggatgggtccgaatactgcagcggaaagtcgaattggattttacaggaggtattgtggtatgttgaatgttcctactggtgaaaatttggactgtaacaatcaaaagaacttcgcccagggctaagcgtctttatttatatatagagagagaatgcaaattatgtttatgtattacgttgtgaagtctataagttatatttggatgtaatcaataaggggattctgtatgcccatttagaaaaatggaagtttattttcagaaatactaaagttatatgattttgatctattgttataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="94405" stop="95570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94642" g_stop="94652" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94653" i_stop="94713" i_length="61">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94714" g_stop="95280" g_length="567"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="578" r_length="567" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E397237" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397237" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94642" e_stop="94652"/>
          <exon e_start="94714" e_stop="95280"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCGAATACTGCAGCGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGTTGAATGTTCCTACTGGTGAAAATTTGGACTGTAACAATCAAAAGAACTTCGCCCAGGGCTAAGCGTCTTTATTTATATATAGAGAGAGAATGCAAATTATGTTTATGTATTACGTTGTGAAGTCTATAAGTTATATTTGGATGTAATCAATAAGGGGATTCTGTATGCCCATTTAGAAAAATGGAAGTTTATTTTCAGAAATACTAAAGTTATATGATTTTGATCTTTTGTTATAAATTATGTTGAA</genome_strand>
        <mrna_strand>CAATTGACACA.............................................................CCAATTTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCGAATACTGCAGCGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGTTGAATGTTCCTACTGGTGAAAATTTGGACTGTAACAATCAAAAGAACTTCGCCCAGGGCTAAGCGTCTTTATTTATATATAGAGAGAGAATGCAAATTATGTTTATGTATTACGTTGTGAAGTCTATAAGTTATATTTGGATGTAATCAATAAGGGGATTCTGTATGCCCATTTAGAAAAATGGAAGTTTATTTTCAGAAATACTAAAGTTATATGATTTTGATCTATTGTTATAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E203699" ref_strand="+" ref_description="SGN-E203699 [cLEC-15-F14]">
      <seq>caccaatctaactacgaacgagctggacaaggtattggtgttggacaagagttagtgaacaaccctgatttagttgcgacagatcctataatatcattcaaaacagcaatatggttctggatgacagaacaggataataaaccatcatgccacaacgttatcattggacaatggacgccatcccctaaagatacagcagctaatagagttccagggtacggtgtcattaccaacatcattaacggtcaatttgaatgtgggatgggtccgaatactgcagcggaaagtcgaattggattttacaggaggtattgtggtatgttgaatgttcctactggtgaaaatttggactgtaacaatcaaaagaacttcgcccagggctaagcgtctttatttatatatagagagagaatgcaaattatgtttatgtattacgttgtgaagtctataagttatatttggatgtaatcaataaggggattctgtatgcccatttagaaaaatggaagtttattttcagaaatactaaagttatatgatttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="94411" stop="95553"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94651" g_stop="94652" g_length="2"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="2" r_length="2" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94653" i_stop="94713" i_length="61">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94714" g_stop="95253" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="542" r_length="540" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="543" polyA_stop="553"/>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E203699" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94651" e_stop="94652"/>
          <exon e_start="94714" e_stop="95253"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCGAATACTGCAGCGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGTTGAATGTTCCTACTGGTGAAAATTTGGACTGTAACAATCAAAAGAACTTCGCCCAGGGCTAAGCGTCTTTATTTATATATAGAGAGAGAATGCAAATTATGTTTATGTATTACGTTGTGAAGTCTATAAGTTATATTTGGATGTAATCAATAAGGGGATTCTGTATGCCCATTTAGAAAAATGGAAGTTTATTTTCAGAAATACTAAAGTTATATGATTT</genome_strand>
        <mrna_strand>CA.............................................................CCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCGAATACTGCAGCGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGTTGAATGTTCCTACTGGTGAAAATTTGGACTGTAACAATCAAAAGAACTTCGCCCAGGGCTAAGCGTCTTTATTTATATATAGAGAGAGAATGCAAATTATGTTTATGTATTACGTTGTGAAGTCTATAAGTTATATTTGGATGTAATCAATAAGGGGATTCTGTATGCCCATTTAGAAAAATGGAAGTTTATTTTCAGAAATACTAAAGTTATATGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E390881" ref_strand="+" ref_description="SGN-E390881 [TUS-47-M20](-)">
      <seq>gaacgagcgggacaaaggtatgggtgttggacaagagttagtgaacaaccctgattttagttgcgacagatcctataatatcattcaaaacagcaatatggttctggatgacagaacaggataataaaccatcatgccacaacgttatcattggacaatggacgccatcccctaaagatacagcagctaatagagttccagggtacggtgtcattaccaacatcattaacggtcaatttgaatgtgggatgggtccgaatactgcagcggaaagtcgaattggattttacaggaggtattgtggtatgttgaatgttcctactggtgaaaatttggactgtaacaatcaaaagaacttcgcccagggctaagcgtctttatttatatatagagagagaatgcaaattatgtttatgtattacgttgtgaagtctataagttatatttggatgtaatcaataaggggattctgtatgcccatttagaaaaatggaagtttattttcagaaatactaaagttatatgattttgatcttttgttataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="94427" stop="95570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94727" g_stop="95277" g_length="551"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="553" r_length="553" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E390881" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390881" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94727" e_stop="95277"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACGAGCTGGAC-AAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGA-TTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCGAATACTGCAGCGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGTTGAATGTTCCTACTGGTGAAAATTTGGACTGTAACAATCAAAAGAACTTCGCCCAGGGCTAAGCGTCTTTATTTATATATAGAGAGAGAATGCAAATTATGTTTATGTATTACGTTGTGAAGTCTATAAGTTATATTTGGATGTAATCAATAAGGGGATTCTGTATGCCCATTTAGAAAAATGGAAGTTTATTTTCAGAAATACTAAAGTTATATGATTTTGATCTTTTGTTATAAATTATGTT</genome_strand>
        <mrna_strand>GAACGAGCGGGACAAAGGTATGGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCGAATACTGCAGCGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGTTGAATGTTCCTACTGGTGAAAATTTGGACTGTAACAATCAAAAGAACTTCGCCCAGGGCTAAGCGTCTTTATTTATATATAGAGAGAGAATGCAAATTATGTTTATGTATTACGTTGTGAAGTCTATAAGTTATATTTGGATGTAATCAATAAGGGGATTCTGTATGCCCATTTAGAAAAATGGAAGTTTATTTTCAGAAATACTAAAGTTATATGATTTTGATCTTTTGTTATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E292052" ref_strand="+" ref_description="SGN-E292052 [cLET-1-A5](-)">
      <seq>agatcctataatatcattcaaaacagcaatatggttctggatgacagaacaggataataaaccatcatgccacaacgttatcattggacaatggacgccatcccctaaagatacagcagctaatagagttccagggtacggtgtcattaccaacatcattaacggtcaatttgaatgtgggatgggtccgaatactgcagcggaaagtcgaattggattttacaggaggtattgtggtatgttgaatgttcctactggtgaaaatttggactgtaacaatcaaaagaacttcgcccagggctaagcgtctttatttatatatagagagagaatgcaaattatgtttatgtattacgttgtgaagtctataagttatatttggatgtaatcaataaggggattctgtatgcccatttagaaaaatggaagtttattttcagaaatactaaagttatatgattttgatctttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="94492" stop="95561"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94792" g_stop="95270" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="479" r_length="479" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E292052" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292052" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94792" e_stop="95270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCGAATACTGCAGCGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGTTGAATGTTCCTACTGGTGAAAATTTGGACTGTAACAATCAAAAGAACTTCGCCCAGGGCTAAGCGTCTTTATTTATATATAGAGAGAGAATGCAAATTATGTTTATGTATTACGTTGTGAAGTCTATAAGTTATATTTGGATGTAATCAATAAGGGGATTCTGTATGCCCATTTAGAAAAATGGAAGTTTATTTTCAGAAATACTAAAGTTATATGATTTTGATCTTTTGTTATAAA</genome_strand>
        <mrna_strand>AGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCGAATACTGCAGCGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGTTGAATGTTCCTACTGGTGAAAATTTGGACTGTAACAATCAAAAGAACTTCGCCCAGGGCTAAGCGTCTTTATTTATATATAGAGAGAGAATGCAAATTATGTTTATGTATTACGTTGTGAAGTCTATAAGTTATATTTGGATGTAATCAATAAGGGGATTCTGTATGCCCATTTAGAAAAATGGAAGTTTATTTTCAGAAATACTAAAGTTATATGATTTTGATCTTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E359301" ref_strand="-" ref_description="SGN-E359301 [cLHT-31-I14]">
      <seq>agatcctataatatcattcaaaacagcaatatggttctggatgacagcacaggataataaaccatcatgccacaacgttatcattggacaatggacgccatccccagcagatacggcagctaatagagttccagggtacggtgtcattaccaacatcattaacggtggacttgaatgtaatatgggtccaaatactgcagtggaaagtcgaattggattttacaggaggtattgtggtatgctgaatgttcccactggtgaaaatttggactgtaacaatcaaaagaactttgcccagggctaagcgtctttatatatatagagaatgcaaattatgtttatgtattacgttgtgaagtctataagttatatttggatgtaatcaataaggggattctgtatgcccatttagaaaaatggaagttgattttcagaaatactaaagttatatgattttgaaaaaaaaaaaaaaaaaaaactcgagactagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="94492" stop="95556"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94792" g_stop="95255" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="458" r_length="458" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="459" polyA_stop="479"/>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E359301" ref_strand="-">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359301" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="94792" e_stop="95255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCGAATACTGCAGCGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGTTGAATGTTCCTACTGGTGAAAATTTGGACTGTAACAATCAAAAGAACTTCGCCCAGGGCTAAGCGTCTTTATTTATATATAGAGAGAGAATGCAAATTATGTTTATGTATTACGTTGTGAAGTCTATAAGTTATATTTGGATGTAATCAATAAGGGGATTCTGTATGCCCATTTAGAAAAATGGAAGTTTATTTTCAGAAATACTAAAGTTATATGATTTTG</genome_strand>
        <mrna_strand>AGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGCACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCAGCAGATACGGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTGGACTTGAATGTAATATGGGTCCAAATACTGCAGTGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGCTGAATGTTCCCACTGGTGAAAATTTGGACTGTAACAATCAAAAGAACTTTGCCCAGGGCTAAGCGTCTTTA--TATATAT----AGAGAATGCAAATTATGTTTATGTATTACGTTGTGAAGTCTATAAGTTATATTTGGATGTAATCAATAAGGGGATTCTGTATGCCCATTTAGAAAAATGGAAGTTGATTTTCAGAAATACTAAAGTTATATGATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E288914" ref_strand="+" ref_description="SGN-E288914 [cLES-17-I13]">
      <seq>aatatggttctggatgacagaacaggataataaaccatcatgccacaacgttatcattggacaatggacgccatcccctaaagatacagcagctaatagagttccagggtacggtgtcattaccaacatcattaacggtcaatttgaatgtgggatgggtccgaatactgcagcggaaagtcgaattggattttacaggaggtattgtggtatgttgaatgttcctactggtgaaaatttggactgtaacaatcaaaagaacttcgcccagggctaagcgtctttatttatatatagagagagaatgcaaattatgtttatgtattacgttgtgaagtctataagttatatttggatgtaatcaataaggggattctgtatgcccatttagaaaaatggaagtttattttcagaaatactaaagttatatgattttgatcttttgttataaattatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="94519" stop="95575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94819" g_stop="95275" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="457" r_length="457" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E288914" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94819" e_stop="95275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCGAATACTGCAGCGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGTTGAATGTTCCTACTGGTGAAAATTTGGACTGTAACAATCAAAAGAACTTCGCCCAGGGCTAAGCGTCTTTATTTATATATAGAGAGAGAATGCAAATTATGTTTATGTATTACGTTGTGAAGTCTATAAGTTATATTTGGATGTAATCAATAAGGGGATTCTGTATGCCCATTTAGAAAAATGGAAGTTTATTTTCAGAAATACTAAAGTTATATGATTTTGATCTTTTGTTATAAATTATG</genome_strand>
        <mrna_strand>AATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCGAATACTGCAGCGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGTTGAATGTTCCTACTGGTGAAAATTTGGACTGTAACAATCAAAAGAACTTCGCCCAGGGCTAAGCGTCTTTATTTATATATAGAGAGAGAATGCAAATTATGTTTATGTATTACGTTGTGAAGTCTATAAGTTATATTTGGATGTAATCAATAAGGGGATTCTGTATGCCCATTTAGAAAAATGGAAGTTTATTTTCAGAAATACTAAAGTTATATGATTTTGATCTTTTGTTATAAATTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E281913" ref_strand="+" ref_description="SGN-E281913 [cLES-2-B6]">
      <seq>gccatcccctaaagatacagcagctaatagagttccagggtacggtgtcattaccaacatcattaacggtcaatttgaatgtgggatgggtccgaatactgcagcggaaagtcgaattggattttacaggaggtattgtggtatgttgaatgttcctactggtgaaaatttggactgtaacaatcaaaagaacttcgcccagggctaagcgtctttatttatatatagagagagaatgcaaattatgtttatgtattacgttgtgaagtctataagttatatttggatgtaatcaataaggggattctgtatgcccatttagaaaaatggaagtttattttcagaaatactaaagttatatgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="94588" stop="95550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94888" g_stop="95249" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="362" r_length="362" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="363" polyA_stop="373"/>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E281913" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>362</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281913" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94888" e_stop="95249"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCGAATACTGCAGCGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGTTGAATGTTCCTACTGGTGAAAATTTGGACTGTAACAATCAAAAGAACTTCGCCCAGGGCTAAGCGTCTTTATTTATATATAGAGAGAGAATGCAAATTATGTTTATGTATTACGTTGTGAAGTCTATAAGTTATATTTGGATGTAATCAATAAGGGGATTCTGTATGCCCATTTAGAAAAATGGAAGTTTATTTTCAGAAATACTAAAGTTATATG</genome_strand>
        <mrna_strand>GCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCGAATACTGCAGCGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGTTGAATGTTCCTACTGGTGAAAATTTGGACTGTAACAATCAAAAGAACTTCGCCCAGGGCTAAGCGTCTTTATTTATATATAGAGAGAGAATGCAAATTATGTTTATGTATTACGTTGTGAAGTCTATAAGTTATATTTGGATGTAATCAATAAGGGGATTCTGTATGCCCATTTAGAAAAATGGAAGTTTATTTTCAGAAATACTAAAGTTATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E718380" ref_strand="+" ref_description="SGN-E718380 [FC04CA03]">
      <seq>aatcggccgaattaaacactatctaatgcataagaaagaacagagagaagcaaaaaagaaatggagtttttgagatcacaaatggtattatgttgtgtctttttgttgttcctaacgggaagctttgcacaagatgttggtacaattgtgacaagtgacttgttcaacgagatgctgaagaatcgaaacgatgatagatgtcctgccaagggcttctacacttatgatgcattcatagctgcagccaattcatttccaggttttggtactaccggtgatgatactgcgcgtaagaaggaaattgctgcctttttcggtcaaacttctcatgaaactactggtggtagcctaagtgctgatggtccatttgccggaggatattgttttgttagggaaggcaatcaaatgggaagtggattttatggcaaaggacctatccaattgacagggcaatctaactatgacttagctgggcaagcaattggacaagacttagttaacaaccctgacttagtagctacagatgcaactgtatcttttaaaacagcaatatggttctggatgaccgcacaaggcaataagccatcatgccacgatgttatcacagggcaatggacgccatcagccgccgatgcatcagcaaatagacaaccaggctacggtgtcattacaaacataattaacggtggaattgaatgtggcaaaggacagaatccacaagtggaggatcggattggattctacagaaggtattgtacgatactgaatgttgctcccggggacaaccttgattgctacgaccagaggaactttgctgaggcctagctttgtgttttagtcatgatgatgtctgaatgaataagggattttggatgcccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="97212" stop="99041"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97514" g_stop="97841" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="340" r_length="328" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97842" i_stop="98097" i_length="256">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98098" g_stop="98206" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="449" r_length="109" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98207" i_stop="98309" i_length="103">
            <donor d_prob="0.950" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98310" g_stop="98741" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="881" r_length="432" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E718380" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>869</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718380" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97514" e_stop="97841"/>
          <exon e_start="98098" e_stop="98206"/>
          <exon e_start="98310" e_stop="98741"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACACTATCTAATGCATAAGAAAGAACAGAGAGAAGCAAAAAAGAAATGGAGTTTTTGAGATCACAAATGGTATTATGTTGTGTCTTTTTGTTGTTCCTAACGGGAAGCTTTGCACAAGATGTTGGTACAATTGTGACAAGTGACTTGTTCAACGAGATGCTGAAGAATCGAAACGATGATAGATGTCCTGCCAAGGGCTTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCATTTCCAGGTTTTGGTACTACCGGTGATGATACTGCGCGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACTTCTCATGAAACTACTGGTAATTTTGGCTCTTACACCAAACTACTGTTATTTGTTCAACATGTAAGTACACAAAATTGGACTGACCGTATCCAGGATTTTGAGGTTCTAGATGCTCTACCGTTTGAACAGTAGCTTGGTTTCAATGTTAGCATAATTGTACATAGATCTGCCCCTGATTGTAACACAAAGTGTCTAGTTATCAAACGTTTTTAAGAAATGGACTTACGTTATATACACTACAATAAGTGAAGTATTTGGTTCTAATTTTGCAGGTGGTAGCCTAAGTGCTGATGGTCCATTTGCCGGAGGATATTGTTTTGTTAGGGAAGGCAATCAAATGGGAAGTGGATTTTATGGCAGAGGACCTATCCAATTGACAGGGTATGTAAAACAGAGGAAAATAGTTCATTTCTAACTAGGAAATATTAGATGAAAAAAACTCCATTTTGTAACTAATTTATTGATGATAAAATGAATTTTGCAGGCAATCTAACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATGAATAAGGGATTTTGGATGCCCATT</genome_strand>
        <mrna_strand>TAAACACTATCTAATGCATAAGAAAGAACAGAGAGAAGCAAAAAAGAAATGGAGTTTTTGAGATCACAAATGGTATTATGTTGTGTCTTTTTGTTGTTCCTAACGGGAAGCTTTGCACAAGATGTTGGTACAATTGTGACAAGTGACTTGTTCAACGAGATGCTGAAGAATCGAAACGATGATAGATGTCCTGCCAAGGGCTTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCATTTCCAGGTTTTGGTACTACCGGTGATGATACTGCGCGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACTTCTCATGAAACTACTG................................................................................................................................................................................................................................................................GTGGTAGCCTAAGTGCTGATGGTCCATTTGCCGGAGGATATTGTTTTGTTAGGGAAGGCAATCAAATGGGAAGTGGATTTTATGGCAAAGGACCTATCCAATTGACAGG.......................................................................................................GCAATCTAACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATGAATAAGGGATTTTGGATGCCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E729903" ref_strand="+" ref_description="SGN-E729903 [LA22BH01]">
      <seq>gaaagaacagagagaagcaaaaaagaaatggagtttttgagatcacaaatggtattatgttgtgtctttttgttgttcctaacgggaagctttgcacaagatgttggtacaattgtgacaagtgacttgttcaacgagatgctgaagaatcgaaacgatgatagatgtcctgccaagggcttctacacttatgatgcattcatagctgcagccaattcatttccaggttttggtactaccggtgatgatactgcgcgtaagaaggaaattgctgcctttttcggtcaaacttctcatgaaactactggtggtagcctaagtgctgatggtccatttgccggaggatattgttttgttagggaaggcaatcaaatgggaagtggattttatggcagaggacctatccaattgacagggcaatctaactatgacttagctgggcaagcaattggacaagacttagttaacaaccctgacttagtagctacagatgcaactgtatcttttaaaacagcaatatggttctggatgaccgcacaaggcaataagccatcatgccacgatgttatcacagggcaatggacgccatcagccgccgatgcatcagcaaatagacaaccaggctacggtgtcattacaaacataattaacggtggaattgaatgtggcaaaggacagaatccacaagtggaggatcggattggattctacagaaggtattgtacgatactgaatgttgctcccggggacnaccttgattgctacgaccagaggaactttgctgaggcctagctttgtgttttagtcatgatgatgtctgaatgaataaaggattttggatgccccatttggaatatgtagttttcttattttgtctacacaaataagagtttcttttatcttataacataatataccacatgtactattatctcatccatattttattttcccttttgttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="97235" stop="99154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97535" g_stop="97841" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="307" r_length="307" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97842" i_stop="98097" i_length="256">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98098" g_stop="98206" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="416" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98207" i_stop="98309" i_length="103">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98310" g_stop="98849" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="958" r_length="542" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="962" polyA_stop="972"/>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E729903" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>956</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97535" e_stop="97841"/>
          <exon e_start="98098" e_stop="98206"/>
          <exon e_start="98310" e_stop="98849"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAACAGAGAGAAGCAAAAAAGAAATGGAGTTTTTGAGATCACAAATGGTATTATGTTGTGTCTTTTTGTTGTTCCTAACGGGAAGCTTTGCACAAGATGTTGGTACAATTGTGACAAGTGACTTGTTCAACGAGATGCTGAAGAATCGAAACGATGATAGATGTCCTGCCAAGGGCTTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCATTTCCAGGTTTTGGTACTACCGGTGATGATACTGCGCGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACTTCTCATGAAACTACTGGTAATTTTGGCTCTTACACCAAACTACTGTTATTTGTTCAACATGTAAGTACACAAAATTGGACTGACCGTATCCAGGATTTTGAGGTTCTAGATGCTCTACCGTTTGAACAGTAGCTTGGTTTCAATGTTAGCATAATTGTACATAGATCTGCCCCTGATTGTAACACAAAGTGTCTAGTTATCAAACGTTTTTAAGAAATGGACTTACGTTATATACACTACAATAAGTGAAGTATTTGGTTCTAATTTTGCAGGTGGTAGCCTAAGTGCTGATGGTCCATTTGCCGGAGGATATTGTTTTGTTAGGGAAGGCAATCAAATGGGAAGTGGATTTTATGGCAGAGGACCTATCCAATTGACAGGGTATGTAAAACAGAGGAAAATAGTTCATTTCTAACTAGGAAATATTAGATGAAAAAAACTCCATTTTGTAACTAATTTATTGATGATAAAATGAATTTTGCAGGCAATCTAACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATGAATAAGGGATTTTGGATG-CCCATTTGGAATATGTAG-TTTCTTATTTTGTCTACACAAATAAGAGTTTCTTTTATCTTATAACATAATATACCACATGTACTATTATCTCATCGATATTTTAATTTCCCCTTT</genome_strand>
        <mrna_strand>GAAAGAACAGAGAGAAGCAAAAAAGAAATGGAGTTTTTGAGATCACAAATGGTATTATGTTGTGTCTTTTTGTTGTTCCTAACGGGAAGCTTTGCACAAGATGTTGGTACAATTGTGACAAGTGACTTGTTCAACGAGATGCTGAAGAATCGAAACGATGATAGATGTCCTGCCAAGGGCTTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCATTTCCAGGTTTTGGTACTACCGGTGATGATACTGCGCGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACTTCTCATGAAACTACTG................................................................................................................................................................................................................................................................GTGGTAGCCTAAGTGCTGATGGTCCATTTGCCGGAGGATATTGTTTTGTTAGGGAAGGCAATCAAATGGGAAGTGGATTTTATGGCAGAGGACCTATCCAATTGACAGG.......................................................................................................GCAATCTAACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACNACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATGAATAAAGGATTTTGGATGCCCCATTTGGAATATGTAGTTTTCTTATTTTGTCTACACAAATAAGAGTTTCTTTTATCTTATAACATAATATACCACATGTACTATTATCTCATCCATATTTTATTTTCCCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E706504" ref_strand="+" ref_description="SGN-E706504 [FA30AF02]">
      <seq>gaaagaacagagagaagcaaaaaagaaatggagtttttgagatcacaaatggtattatgttgtgtctttttgttgttcctaacgggaagctttgcacaagatgttggtacaattgtgacaagtgacttgttcaacgagatgctgaagaatcgaaacgatgatagatgtcctgccaagggcttctacacttatgatgcattcatagctgcagccaattcatttccaggttttggtactaccggtgatgatactgcgcgtaagaaggaaattgctgcctttttcggtcaaacttctcatgaaactactggtggtagcctaagtgctgatggtccatttgccggaggatattgttttgttagggaaggcaatcaaatgggaagtggattttatggcagaggacctatccaattgacagggcaatctaactatgacttagctgggcaagcaattggacaagacttagttaacaaccctgacttagtagctacagatgcaactgtatcttttaaaacagcaatatggttctggatgaccgcacaaggcaataagccatcatgccacgatgttatcacagggcaatggacgccatcagccgccgatgcatcagcaaatagacaaccaggctacggtgtcattacaaacataattaacggtggaattgaatgtggcaaaggacagaatccacaagtggaggatcggattggattctacagaaggtattgtacgatactgaatgttgctcccggggacaaccttgattgctaccaccagaggaactttgctgaggcctagctttgtgttttagtcatgatgatgtctgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="97235" stop="99017"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97535" g_stop="97841" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="307" r_length="307" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97842" i_stop="98097" i_length="256">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98098" g_stop="98206" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="416" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98207" i_stop="98309" i_length="103">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98310" g_stop="98717" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="824" r_length="408" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E706504" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>824</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706504" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97535" e_stop="97841"/>
          <exon e_start="98098" e_stop="98206"/>
          <exon e_start="98310" e_stop="98717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAACAGAGAGAAGCAAAAAAGAAATGGAGTTTTTGAGATCACAAATGGTATTATGTTGTGTCTTTTTGTTGTTCCTAACGGGAAGCTTTGCACAAGATGTTGGTACAATTGTGACAAGTGACTTGTTCAACGAGATGCTGAAGAATCGAAACGATGATAGATGTCCTGCCAAGGGCTTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCATTTCCAGGTTTTGGTACTACCGGTGATGATACTGCGCGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACTTCTCATGAAACTACTGGTAATTTTGGCTCTTACACCAAACTACTGTTATTTGTTCAACATGTAAGTACACAAAATTGGACTGACCGTATCCAGGATTTTGAGGTTCTAGATGCTCTACCGTTTGAACAGTAGCTTGGTTTCAATGTTAGCATAATTGTACATAGATCTGCCCCTGATTGTAACACAAAGTGTCTAGTTATCAAACGTTTTTAAGAAATGGACTTACGTTATATACACTACAATAAGTGAAGTATTTGGTTCTAATTTTGCAGGTGGTAGCCTAAGTGCTGATGGTCCATTTGCCGGAGGATATTGTTTTGTTAGGGAAGGCAATCAAATGGGAAGTGGATTTTATGGCAGAGGACCTATCCAATTGACAGGGTATGTAAAACAGAGGAAAATAGTTCATTTCTAACTAGGAAATATTAGATGAAAAAAACTCCATTTTGTAACTAATTTATTGATGATAAAATGAATTTTGCAGGCAATCTAACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATG</genome_strand>
        <mrna_strand>GAAAGAACAGAGAGAAGCAAAAAAGAAATGGAGTTTTTGAGATCACAAATGGTATTATGTTGTGTCTTTTTGTTGTTCCTAACGGGAAGCTTTGCACAAGATGTTGGTACAATTGTGACAAGTGACTTGTTCAACGAGATGCTGAAGAATCGAAACGATGATAGATGTCCTGCCAAGGGCTTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCATTTCCAGGTTTTGGTACTACCGGTGATGATACTGCGCGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACTTCTCATGAAACTACTG................................................................................................................................................................................................................................................................GTGGTAGCCTAAGTGCTGATGGTCCATTTGCCGGAGGATATTGTTTTGTTAGGGAAGGCAATCAAATGGGAAGTGGATTTTATGGCAGAGGACCTATCCAATTGACAGG.......................................................................................................GCAATCTAACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACCACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E710939" ref_strand="+" ref_description="SGN-E710939 [FA57BH02]">
      <seq>cccataacagagagaagcaaaaaagaaatggagtttttgagatcacaaatggtattatgttgtgtctttttgttgttcctaacgggaagctttgcacaagatgttggtacaattgtgacaagtgacttgttcaacgagatgctgaagaatccaaacgatgatagatgtcctgccaagggcttctacacttatgatgcattcatagctgcagccaattcatttccaggttttggtactaccggtgatgatactgcgcgtaagaaggaaattgctgcctttttcggtcaaacttctcatgaaactactggtggtagcctaagtgctgatggtccatttgccggaggatattgttttgttagggaaggcaatcaaatgggaagtggattttatggcagaggacctatccaattgacagggcaatctaactatgacttagctgggcaagcaattggacaagacttagttaacaaccctgacttagtagctacagatgcaactgtatcttttaaaacagcaatatggttctggatgaccgcacaaggcaataagccatcatgccacgatgttatcacagggcaatggacgccatcagccgccgatgcatcagcaaatagacaaccaggctacggtgtcattacaaacataattaccggtggaattgaatgtggcaaaggacagaatccacaagtggaggatcggattggattctacagaaggtattgtacaatactgaatgttgctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="97238" stop="98936"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97535" g_stop="97841" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="307" r_length="307" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97842" i_stop="98097" i_length="256">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98098" g_stop="98206" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="416" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98207" i_stop="98309" i_length="103">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98310" g_stop="98636" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="743" r_length="327" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E710939" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97535" e_stop="97841"/>
          <exon e_start="98098" e_stop="98206"/>
          <exon e_start="98310" e_stop="98636"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAACAGAGAGAAGCAAAAAAGAAATGGAGTTTTTGAGATCACAAATGGTATTATGTTGTGTCTTTTTGTTGTTCCTAACGGGAAGCTTTGCACAAGATGTTGGTACAATTGTGACAAGTGACTTGTTCAACGAGATGCTGAAGAATCGAAACGATGATAGATGTCCTGCCAAGGGCTTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCATTTCCAGGTTTTGGTACTACCGGTGATGATACTGCGCGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACTTCTCATGAAACTACTGGTAATTTTGGCTCTTACACCAAACTACTGTTATTTGTTCAACATGTAAGTACACAAAATTGGACTGACCGTATCCAGGATTTTGAGGTTCTAGATGCTCTACCGTTTGAACAGTAGCTTGGTTTCAATGTTAGCATAATTGTACATAGATCTGCCCCTGATTGTAACACAAAGTGTCTAGTTATCAAACGTTTTTAAGAAATGGACTTACGTTATATACACTACAATAAGTGAAGTATTTGGTTCTAATTTTGCAGGTGGTAGCCTAAGTGCTGATGGTCCATTTGCCGGAGGATATTGTTTTGTTAGGGAAGGCAATCAAATGGGAAGTGGATTTTATGGCAGAGGACCTATCCAATTGACAGGGTATGTAAAACAGAGGAAAATAGTTCATTTCTAACTAGGAAATATTAGATGAAAAAAACTCCATTTTGTAACTAATTTATTGATGATAAAATGAATTTTGCAGGCAATCTAACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCC</genome_strand>
        <mrna_strand>CCCATAACAGAGAGAAGCAAAAAAGAAATGGAGTTTTTGAGATCACAAATGGTATTATGTTGTGTCTTTTTGTTGTTCCTAACGGGAAGCTTTGCACAAGATGTTGGTACAATTGTGACAAGTGACTTGTTCAACGAGATGCTGAAGAATCCAAACGATGATAGATGTCCTGCCAAGGGCTTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCATTTCCAGGTTTTGGTACTACCGGTGATGATACTGCGCGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACTTCTCATGAAACTACTG................................................................................................................................................................................................................................................................GTGGTAGCCTAAGTGCTGATGGTCCATTTGCCGGAGGATATTGTTTTGTTAGGGAAGGCAATCAAATGGGAAGTGGATTTTATGGCAGAGGACCTATCCAATTGACAGG.......................................................................................................GCAATCTAACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTACCGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACAATACTGAATGTTGCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E732244" ref_strand="+" ref_description="SGN-E732244 [LB01CF05]">
      <seq>aaataacagagagaagcaaaaaagaaatggagtttttgagatcacaaatggtattatgttgtgtctttttgttgttcctaacgggaagctttgcacaagatgttggtacaattgtgacaagtgacttgttcaacgagatgctgaagaatcgaaacgatgatagatgtcctgccaagggcttctacacttatgatgcattcatagctgcagccaattcatttccaggttttggtactaccggtgatgatactgcgcgtaagaaggaaattgctgcctttttcggtcaaacttctcatgaaactactggtggtagcctaagtgctgatggtccatttgccggaggatattgttttgttagggaaggcaatcaaatgggaagtggattttatggcagaggacctatccaattgacagggcaatctaactatgacttagctgggcaagcaattggacaagacttagttaacaaccctgacttagtagctacagatgcaactgtatcttttaaaacagcaatatggttctggatgaccgcacaaggcaataagccatcatgccacgatgttatcacagggcaatggacgccatcagccgccgatgcatcagcaaatagacaaccaggctacggtgtcattacaaacataattaacggtggaattgaatgtggcaaaggacagaatccacaagtggaggatcggattggattctacagaaggtattgtacgatactgaatgttgctcccggggacaaccttgattgctacgaccagaggaactttgctgangcctagctttgtgttttagtcatgatgatgtctgaatgaataagggattttgggatgccatttggaatatgtagtttcttattttgtctacacaaaataagagtttcttttatcttaatacataatataccacattgtaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="97236" stop="99116"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97536" g_stop="97841" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97842" i_stop="98097" i_length="256">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98098" g_stop="98206" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="415" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98207" i_stop="98309" i_length="103">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98310" g_stop="98813" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="920" r_length="505" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="924" polyA_stop="943"/>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E732244" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>919</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97536" e_stop="97841"/>
          <exon e_start="98098" e_stop="98206"/>
          <exon e_start="98310" e_stop="98813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAACAGAGAGAAGCAAAAAAGAAATGGAGTTTTTGAGATCACAAATGGTATTATGTTGTGTCTTTTTGTTGTTCCTAACGGGAAGCTTTGCACAAGATGTTGGTACAATTGTGACAAGTGACTTGTTCAACGAGATGCTGAAGAATCGAAACGATGATAGATGTCCTGCCAAGGGCTTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCATTTCCAGGTTTTGGTACTACCGGTGATGATACTGCGCGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACTTCTCATGAAACTACTGGTAATTTTGGCTCTTACACCAAACTACTGTTATTTGTTCAACATGTAAGTACACAAAATTGGACTGACCGTATCCAGGATTTTGAGGTTCTAGATGCTCTACCGTTTGAACAGTAGCTTGGTTTCAATGTTAGCATAATTGTACATAGATCTGCCCCTGATTGTAACACAAAGTGTCTAGTTATCAAACGTTTTTAAGAAATGGACTTACGTTATATACACTACAATAAGTGAAGTATTTGGTTCTAATTTTGCAGGTGGTAGCCTAAGTGCTGATGGTCCATTTGCCGGAGGATATTGTTTTGTTAGGGAAGGCAATCAAATGGGAAGTGGATTTTATGGCAGAGGACCTATCCAATTGACAGGGTATGTAAAACAGAGGAAAATAGTTCATTTCTAACTAGGAAATATTAGATGAAAAAAACTCCATTTTGTAACTAATTTATTGATGATAAAATGAATTTTGCAGGCAATCTAACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATGAATAAGGGATTTT-GGATGCCCATTTGGAATATGTAGTTTCTTATTTTGTCTACAC-AAATAAGAGTTTCTTTTATCTTATAACATAATATACCACAT</genome_strand>
        <mrna_strand>AAATAACAGAGAGAAGCAAAAAAGAAATGGAGTTTTTGAGATCACAAATGGTATTATGTTGTGTCTTTTTGTTGTTCCTAACGGGAAGCTTTGCACAAGATGTTGGTACAATTGTGACAAGTGACTTGTTCAACGAGATGCTGAAGAATCGAAACGATGATAGATGTCCTGCCAAGGGCTTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCATTTCCAGGTTTTGGTACTACCGGTGATGATACTGCGCGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACTTCTCATGAAACTACTG................................................................................................................................................................................................................................................................GTGGTAGCCTAAGTGCTGATGGTCCATTTGCCGGAGGATATTGTTTTGTTAGGGAAGGCAATCAAATGGGAAGTGGATTTTATGGCAGAGGACCTATCCAATTGACAGG.......................................................................................................GCAATCTAACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGANGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATGAATAAGGGATTTTGGGATG-CCATTTGGAATATGTAGTTTCTTATTTTGTCTACACAAAATAAGAGTTTCTTTTATCTTAATACATAATATACCACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E710887" ref_strand="+" ref_description="SGN-E710887 [FA57BA07]">
      <seq>caataacagagagaagcaaaaaagaaatggagtttttgagatcacaaatggtattatgttgtgtctttttgttgttcctaacgggaagctttgcacaagatgttggtacaattgtgacaagtgacttgttcaacgagatgctgaagaatcgaaacgatgatagatgtcctgccaagggcttctacacttatgatgcattcatagctgcagccaattcatttccaggttttggtactaccggtgatgatactgcgcgtaagaaggaaattgctgcctttttcggtcaaacttctcatgaaactactggtggtagcctaagtgctgatggtccatttgccggaggatattgttttgttagggaaggcaatcaaatgggaagtggattttatggcagaggacctatccaattgacagggcaatctaactatgacttagctgggcaagcaattggacaagacttagttaacaaccctgacttagtagctacagatgcaactgtatcttttaaaacagcaatatggttctggatgaccgcacaaggcaataagccatcatgccacgatgttatcacagggcaatggacgccatcagccgccgatgcatcagcaaatagacaaccaggctacggtgtcattacaaacataattaacggtggaattgaatgtggcaaaggacagaatccacaagtggaggatcggattggattctacagaaggtattgtacgatactgaatgttgctcccggggacaaccttgattgctacgaccagaggaactttgctgaggcctagctttgtgttttagtcatgatgatgtctgaatgaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="97237" stop="99021"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97536" g_stop="97841" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97842" i_stop="98097" i_length="256">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98098" g_stop="98206" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="415" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98207" i_stop="98309" i_length="103">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98310" g_stop="98721" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="827" r_length="412" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E710887" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>827</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97536" e_stop="97841"/>
          <exon e_start="98098" e_stop="98206"/>
          <exon e_start="98310" e_stop="98721"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAACAGAGAGAAGCAAAAAAGAAATGGAGTTTTTGAGATCACAAATGGTATTATGTTGTGTCTTTTTGTTGTTCCTAACGGGAAGCTTTGCACAAGATGTTGGTACAATTGTGACAAGTGACTTGTTCAACGAGATGCTGAAGAATCGAAACGATGATAGATGTCCTGCCAAGGGCTTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCATTTCCAGGTTTTGGTACTACCGGTGATGATACTGCGCGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACTTCTCATGAAACTACTGGTAATTTTGGCTCTTACACCAAACTACTGTTATTTGTTCAACATGTAAGTACACAAAATTGGACTGACCGTATCCAGGATTTTGAGGTTCTAGATGCTCTACCGTTTGAACAGTAGCTTGGTTTCAATGTTAGCATAATTGTACATAGATCTGCCCCTGATTGTAACACAAAGTGTCTAGTTATCAAACGTTTTTAAGAAATGGACTTACGTTATATACACTACAATAAGTGAAGTATTTGGTTCTAATTTTGCAGGTGGTAGCCTAAGTGCTGATGGTCCATTTGCCGGAGGATATTGTTTTGTTAGGGAAGGCAATCAAATGGGAAGTGGATTTTATGGCAGAGGACCTATCCAATTGACAGGGTATGTAAAACAGAGGAAAATAGTTCATTTCTAACTAGGAAATATTAGATGAAAAAAACTCCATTTTGTAACTAATTTATTGATGATAAAATGAATTTTGCAGGCAATCTAACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATGAATA</genome_strand>
        <mrna_strand>CAATAACAGAGAGAAGCAAAAAAGAAATGGAGTTTTTGAGATCACAAATGGTATTATGTTGTGTCTTTTTGTTGTTCCTAACGGGAAGCTTTGCACAAGATGTTGGTACAATTGTGACAAGTGACTTGTTCAACGAGATGCTGAAGAATCGAAACGATGATAGATGTCCTGCCAAGGGCTTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCATTTCCAGGTTTTGGTACTACCGGTGATGATACTGCGCGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACTTCTCATGAAACTACTG................................................................................................................................................................................................................................................................GTGGTAGCCTAAGTGCTGATGGTCCATTTGCCGGAGGATATTGTTTTGTTAGGGAAGGCAATCAAATGGGAAGTGGATTTTATGGCAGAGGACCTATCCAATTGACAGG.......................................................................................................GCAATCTAACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATGAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E690803" ref_strand="+" ref_description="SGN-E690803 [LH_Ea04H09]">
      <seq>tagaacagagagaaacaaaaaaaaatggagtttttgagatcacaaatggtattatgttgtgtctttttgttgttcctaacgggaagctttgcacaagatgttggtacaattgtgacaagtgacttgttcaacgagatgctgaagaatcgaaacgatgatagatgccctgccaagggcttctacacttatgatgccttcatagctgcagccaattcatttccaggttttggtacaactggtgatgatactgcgcgtaagaaggaaattgctgcctttttcggtcaaacttctcatgaaactactggtggtagcctaagtgcagatggtccatttgccggaggatattgttttgttagggaaggcaatcaaatgggaagtggattttatggcagaggacctatccaattgacagggcaatctaactatgacttagctgggcaagcaattggacaagacttagttaacaaccctgacttagtagctacagatgcaactgtatcttttaaaacagcaatatggttctggatgaccgcacaaggcaataagccatcatgccacgatgttatcacagggcaatggacgccatcagcagccgatgcatcagcaaatagacaaccaggctacggtgtcattacaaacataattaacggtggaattgaatgtggcaaaggacagaatccacaagtggaggatcggattggattctacagaaggtattgtacgatattgaatgttgctcccggggacaaccttgattgctancaccagaggaactttgctgaggcctagctttgtgttttagtcatgatgatgtctgaatataagggaatgaataagggattttggatgccccattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="97238" stop="99042"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97537" g_stop="97841" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="304" r_length="304" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97842" i_stop="98097" i_length="256">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98098" g_stop="98206" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="413" r_length="109" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98207" i_stop="98309" i_length="103">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98310" g_stop="98725" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="827" r_length="414" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E690803" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>830</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E690803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97537" e_stop="97841"/>
          <exon e_start="98098" e_stop="98206"/>
          <exon e_start="98310" e_stop="98725"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACAGAGAGAAGCAAAAAAGAAATGGAGTTTTTGAGATCACAAATGGTATTATGTTGTGTCTTTTTGTTGTTCCTAACGGGAAGCTTTGCACAAGATGTTGGTACAATTGTGACAAGTGACTTGTTCAACGAGATGCTGAAGAATCGAAACGATGATAGATGTCCTGCCAAGGGCTTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCATTTCCAGGTTTTGGTACTACCGGTGATGATACTGCGCGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACTTCTCATGAAACTACTGGTAATTTTGGCTCTTACACCAAACTACTGTTATTTGTTCAACATGTAAGTACACAAAATTGGACTGACCGTATCCAGGATTTTGAGGTTCTAGATGCTCTACCGTTTGAACAGTAGCTTGGTTTCAATGTTAGCATAATTGTACATAGATCTGCCCCTGATTGTAACACAAAGTGTCTAGTTATCAAACGTTTTTAAGAAATGGACTTACGTTATATACACTACAATAAGTGAAGTATTTGGTTCTAATTTTGCAGGTGGTAGCCTAAGTGCTGATGGTCCATTTGCCGGAGGATATTGTTTTGTTAGGGAAGGCAATCAAATGGGAAGTGGATTTTATGGCAGAGGACCTATCCAATTGACAGGGTATGTAAAACAGAGGAAAATAGTTCATTTCTAACTAGGAAATATTAGATGAAAAAAACTCCATTTTGTAACTAATTTATTGATGATAAAATGAATTTTGCAGGCAATCTAACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATGAATAAGGG</genome_strand>
        <mrna_strand>TAGAACAGAGAGAAACAAAAAA-AAATGGAGTTTTTGAGATCACAAATGGTATTATGTTGTGTCTTTTTGTTGTTCCTAACGGGAAGCTTTGCACAAGATGTTGGTACAATTGTGACAAGTGACTTGTTCAACGAGATGCTGAAGAATCGAAACGATGATAGATGCCCTGCCAAGGGCTTCTACACTTATGATGCCTTCATAGCTGCAGCCAATTCATTTCCAGGTTTTGGTACAACTGGTGATGATACTGCGCGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACTTCTCATGAAACTACTG................................................................................................................................................................................................................................................................GTGGTAGCCTAAGTGCAGATGGTCCATTTGCCGGAGGATATTGTTTTGTTAGGGAAGGCAATCAAATGGGAAGTGGATTTTATGGCAGAGGACCTATCCAATTGACAGG.......................................................................................................GCAATCTAACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCAGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATATTGAATGTTGCTCCCGGGGACAACCTTGATTGCTANCACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAAT--ATAAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E732134" ref_strand="+" ref_description="SGN-E732134 [LB01BE03]">
      <seq>agaacagagagacgctaaaaagaaatggagtttttgagatcacaaatggtattatgttgtgtctttttgttgttcctaacgggaagctttgcacaagatgttggtacaattgtgacaagtgacttgttcaacgagatgctgaagaatcgaaacgatgatagatgtcctgccaagggcttctacacttatgatgcattcatagctgcagccaattcatttccaggttttggtactaccggtgatgatactgcgcgtaagaaggaaattgccgccgatgcatcagcaaatagacaaccaggctacggtgtcattacaaacataattaacggtggaattgaatgtggcaaaggacagaatccacaagtggaggatcggattggattctacagaaggtattgtacgatactgaatgttgctcccggggacaaccttgattgctacgaccagaggaactttgctgaggcctagctttgtgttttagtcatgatgatgtctgaatgaataagggattttggatgcccatttggaatatgtagtttcttattttgtctacacaaataagagtttcttttatcttataacataatataccacatgtactattaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="97238" stop="99122"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97538" g_stop="97805" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="268" r_length="268" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97806" i_stop="98485" i_length="680">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98486" g_stop="98821" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="604" r_length="336" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="605" polyA_stop="617"/>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E732134" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732134" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97538" e_stop="97805"/>
          <exon e_start="98486" e_stop="98821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACAGAGAGAAGCAAAAAAGAAATGGAGTTTTTGAGATCACAAATGGTATTATGTTGTGTCTTTTTGTTGTTCCTAACGGGAAGCTTTGCACAAGATGTTGGTACAATTGTGACAAGTGACTTGTTCAACGAGATGCTGAAGAATCGAAACGATGATAGATGTCCTGCCAAGGGCTTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCATTTCCAGGTTTTGGTACTACCGGTGATGATACTGCGCGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACTTCTCATGAAACTACTGGTAATTTTGGCTCTTACACCAAACTACTGTTATTTGTTCAACATGTAAGTACACAAAATTGGACTGACCGTATCCAGGATTTTGAGGTTCTAGATGCTCTACCGTTTGAACAGTAGCTTGGTTTCAATGTTAGCATAATTGTACATAGATCTGCCCCTGATTGTAACACAAAGTGTCTAGTTATCAAACGTTTTTAAGAAATGGACTTACGTTATATACACTACAATAAGTGAAGTATTTGGTTCTAATTTTGCAGGTGGTAGCCTAAGTGCTGATGGTCCATTTGCCGGAGGATATTGTTTTGTTAGGGAAGGCAATCAAATGGGAAGTGGATTTTATGGCAGAGGACCTATCCAATTGACAGGGTATGTAAAACAGAGGAAAATAGTTCATTTCTAACTAGGAAATATTAGATGAAAAAAACTCCATTTTGTAACTAATTTATTGATGATAAAATGAATTTTGCAGGCAATCTAACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATGAATAAGGGATTTTGGATGCCCATTTGGAATATGTAGTTTCTTATTTTGTCTACACAAATAAGAGTTTCTTTTATCTTATAACATAATATACCACATGTACTATT</genome_strand>
        <mrna_strand>AGAACAGAGAGACGCTAAAAAGAAATGGAGTTTTTGAGATCACAAATGGTATTATGTTGTGTCTTTTTGTTGTTCCTAACGGGAAGCTTTGCACAAGATGTTGGTACAATTGTGACAAGTGACTTGTTCAACGAGATGCTGAAGAATCGAAACGATGATAGATGTCCTGCCAAGGGCTTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCATTTCCAGGTTTTGGTACTACCGGTGATGATACTGCGCGTAAGAAGGAAATTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATGAATAAGGGATTTTGGATGCCCATTTGGAATATGTAGTTTCTTATTTTGTCTACACAAATAAGAGTTTCTTTTATCTTATAACATAATATACCACATGTACTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E454277" ref_strand="+" ref_description="SGN-E454277 [cSTS-22-B24]">
      <seq>aagagagagaaacaaaaaatggagtttttgggatcacaaatggtattatgttgtgtctttttgttgttcctaacaggaaacttggcacaagatgttggtacaattgtgacaagtgacttgttcaacgagatgctcaagaatcgaaacgatgatagatgtcctgccaagggcttctacacttatgatgcattcatagctgcagccaattcgttttcaggttttggtactactggtgatgatactgcccgtaagaaggaaattgctgcctttttgggtcaaacttctcacgaaactactggtggtagcctaagtgcagatggtccatttgccggaggatattgctttcttagggaaggcaaccaagtgggaagtggattttatggcagaggacctatccaattgacagggcaatctaactatgacttagctggacaagcaattggacaagacctagttaacaaccctgacttagtagctacagatgcaactgtatcttttaaaacagcaatatggttctggatgacggcacaaggcaataagccatcatgccacgacgttatcacagggcaatggacgccatcagcagccgatacatcatcaaatagacaaccangctacggtgtcattacaaacataattaacggtggaattgaatgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="97243" stop="98861"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97542" g_stop="97841" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97842" i_stop="98097" i_length="256">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98098" g_stop="98206" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="407" r_length="109" r_score="0.954"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98207" i_stop="98309" i_length="103">
            <donor d_prob="0.950" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98310" g_stop="98561" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="659" r_length="252" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E454277" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E454277" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97542" e_stop="97841"/>
          <exon e_start="98098" e_stop="98206"/>
          <exon e_start="98310" e_stop="98561"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGAGAAGCAAAAAAGAAATGGAGTTTTTGAGATCACAAATGGTATTATGTTGTGTCTTTTTGTTGTTCCTAACGGGAAGCTTTGCACAAGATGTTGGTACAATTGTGACAAGTGACTTGTTCAACGAGATGCTGAAGAATCGAAACGATGATAGATGTCCTGCCAAGGGCTTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCATTTCCAGGTTTTGGTACTACCGGTGATGATACTGCGCGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACTTCTCATGAAACTACTGGTAATTTTGGCTCTTACACCAAACTACTGTTATTTGTTCAACATGTAAGTACACAAAATTGGACTGACCGTATCCAGGATTTTGAGGTTCTAGATGCTCTACCGTTTGAACAGTAGCTTGGTTTCAATGTTAGCATAATTGTACATAGATCTGCCCCTGATTGTAACACAAAGTGTCTAGTTATCAAACGTTTTTAAGAAATGGACTTACGTTATATACACTACAATAAGTGAAGTATTTGGTTCTAATTTTGCAGGTGGTAGCCTAAGTGCTGATGGTCCATTTGCCGGAGGATATTGTTTTGTTAGGGAAGGCAATCAAATGGGAAGTGGATTTTATGGCAGAGGACCTATCCAATTGACAGGGTATGTAAAACAGAGGAAAATAGTTCATTTCTAACTAGGAAATATTAGATGAAAAAAACTCCATTTTGTAACTAATTTATTGATGATAAAATGAATTTTGCAGGCAATCTAACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGG</genome_strand>
        <mrna_strand>AAGAGAGA-G-AAACAAAAAATGGAGTTTTTGGGATCACAAATGGTATTATGTTGTGTCTTTTTGTTGTTCCTAACAGGAAACTTGGCACAAGATGTTGGTACAATTGTGACAAGTGACTTGTTCAACGAGATGCTCAAGAATCGAAACGATGATAGATGTCCTGCCAAGGGCTTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTTCAGGTTTTGGTACTACTGGTGATGATACTGCCCGTAAGAAGGAAATTGCTGCCTTTTTGGGTCAAACTTCTCACGAAACTACTG................................................................................................................................................................................................................................................................GTGGTAGCCTAAGTGCAGATGGTCCATTTGCCGGAGGATATTGCTTTCTTAGGGAAGGCAACCAAGTGGGAAGTGGATTTTATGGCAGAGGACCTATCCAATTGACAGG.......................................................................................................GCAATCTAACTATGACTTAGCTGGACAAGCAATTGGACAAGACCTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACGGCACAAGGCAATAAGCCATCATGCCACGACGTTATCACAGGGCAATGGACGCCATCAGCAGCCGATACATCATCAAATAGACAACCANGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E298953" ref_strand="+" ref_description="SGN-E298953 [cLET-42-E22]">
      <seq>agagagaagcaaaaaagaaatggagtttttgagatcacaaatggtattatgttgtgtctttttgttgttcctaacgggaagctttgcacaagatgttggtacaattgtgacaagtgacttgttcaacgagatgctgaagaatcgaaacgatgatagatgtcctgccaagggcttctacacttatgatgcattcatagctgcagccaattcatttccaggttttggtactaccggtgatgatactgcgcgtaagaaggaaattgctgcctttttcggtcaaacttctcatgaaactactggtggtagcctaagtgctgatggtccatttgccggaggatattgttttgttagggaaggcaatcaaatgggaagtggattttatggcagaggacctatccaattgacagggcaatctaactatgacttagctgggcaagcaagttggacaaagacttagttaacagaccctgacttagtagctacagatgcaactgtatcttttaaaacagcaatatggttctggatgaccgcacaaggcaataagccatcatgccacgatgttatcacagggcaatggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="97243" stop="98777"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97543" g_stop="97841" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="299" r_length="299" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97842" i_stop="98097" i_length="256">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98098" g_stop="98206" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="408" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98207" i_stop="98309" i_length="103">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98310" g_stop="98477" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="579" r_length="171" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E298953" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298953" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97543" e_stop="97841"/>
          <exon e_start="98098" e_stop="98206"/>
          <exon e_start="98310" e_stop="98477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGAAGCAAAAAAGAAATGGAGTTTTTGAGATCACAAATGGTATTATGTTGTGTCTTTTTGTTGTTCCTAACGGGAAGCTTTGCACAAGATGTTGGTACAATTGTGACAAGTGACTTGTTCAACGAGATGCTGAAGAATCGAAACGATGATAGATGTCCTGCCAAGGGCTTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCATTTCCAGGTTTTGGTACTACCGGTGATGATACTGCGCGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACTTCTCATGAAACTACTGGTAATTTTGGCTCTTACACCAAACTACTGTTATTTGTTCAACATGTAAGTACACAAAATTGGACTGACCGTATCCAGGATTTTGAGGTTCTAGATGCTCTACCGTTTGAACAGTAGCTTGGTTTCAATGTTAGCATAATTGTACATAGATCTGCCCCTGATTGTAACACAAAGTGTCTAGTTATCAAACGTTTTTAAGAAATGGACTTACGTTATATACACTACAATAAGTGAAGTATTTGGTTCTAATTTTGCAGGTGGTAGCCTAAGTGCTGATGGTCCATTTGCCGGAGGATATTGTTTTGTTAGGGAAGGCAATCAAATGGGAAGTGGATTTTATGGCAGAGGACCTATCCAATTGACAGGGTATGTAAAACAGAGGAAAATAGTTCATTTCTAACTAGGAAATATTAGATGAAAAAAACTCCATTTTGTAACTAATTTATTGATGATAAAATGAATTTTGCAGGCAATCTAACTATGACTTAGCTGGGCAAGCAA-TTGGAC-AAGACTTAGTTAACA-ACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGAC</genome_strand>
        <mrna_strand>AGAGAGAAGCAAAAAAGAAATGGAGTTTTTGAGATCACAAATGGTATTATGTTGTGTCTTTTTGTTGTTCCTAACGGGAAGCTTTGCACAAGATGTTGGTACAATTGTGACAAGTGACTTGTTCAACGAGATGCTGAAGAATCGAAACGATGATAGATGTCCTGCCAAGGGCTTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCATTTCCAGGTTTTGGTACTACCGGTGATGATACTGCGCGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACTTCTCATGAAACTACTG................................................................................................................................................................................................................................................................GTGGTAGCCTAAGTGCTGATGGTCCATTTGCCGGAGGATATTGTTTTGTTAGGGAAGGCAATCAAATGGGAAGTGGATTTTATGGCAGAGGACCTATCCAATTGACAGG.......................................................................................................GCAATCTAACTATGACTTAGCTGGGCAAGCAAGTTGGACAAAGACTTAGTTAACAGACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E537378" ref_strand="+" ref_description="SGN-E537378 [letfr27]">
      <seq>gagaagcaaaaaagaaatggagtttttgagatcacaaatggtattatgttgtgtctttttgttgttcctaacgggaagctttgcacaagatgttggtacaattgtgacaagtgacttgttcaacgagatgctgaagaatcgaaacgatgatagatgtcctgccaagggcttctacacttatgatgcattcatagctgcagccaattcatttccaggttttggtactaccggtgatgatactgcgcgtaagaaggaaattgctgcctttttcggtcaaacttctcatgaaactactggtggtagcctaagtgctgatggtccatttgccggaggatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="97246" stop="98438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97546" g_stop="97841" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97842" i_stop="98097" i_length="256">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98098" g_stop="98138" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="337" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E537378" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E537378" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97546" e_stop="97841"/>
          <exon e_start="98098" e_stop="98138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAGCAAAAAAGAAATGGAGTTTTTGAGATCACAAATGGTATTATGTTGTGTCTTTTTGTTGTTCCTAACGGGAAGCTTTGCACAAGATGTTGGTACAATTGTGACAAGTGACTTGTTCAACGAGATGCTGAAGAATCGAAACGATGATAGATGTCCTGCCAAGGGCTTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCATTTCCAGGTTTTGGTACTACCGGTGATGATACTGCGCGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACTTCTCATGAAACTACTGGTAATTTTGGCTCTTACACCAAACTACTGTTATTTGTTCAACATGTAAGTACACAAAATTGGACTGACCGTATCCAGGATTTTGAGGTTCTAGATGCTCTACCGTTTGAACAGTAGCTTGGTTTCAATGTTAGCATAATTGTACATAGATCTGCCCCTGATTGTAACACAAAGTGTCTAGTTATCAAACGTTTTTAAGAAATGGACTTACGTTATATACACTACAATAAGTGAAGTATTTGGTTCTAATTTTGCAGGTGGTAGCCTAAGTGCTGATGGTCCATTTGCCGGAGGATAT</genome_strand>
        <mrna_strand>GAGAAGCAAAAAAGAAATGGAGTTTTTGAGATCACAAATGGTATTATGTTGTGTCTTTTTGTTGTTCCTAACGGGAAGCTTTGCACAAGATGTTGGTACAATTGTGACAAGTGACTTGTTCAACGAGATGCTGAAGAATCGAAACGATGATAGATGTCCTGCCAAGGGCTTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCATTTCCAGGTTTTGGTACTACCGGTGATGATACTGCGCGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACTTCTCATGAAACTACTG................................................................................................................................................................................................................................................................GTGGTAGCCTAAGTGCTGATGGTCCATTTGCCGGAGGATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E469170" ref_strand="+" ref_description="SGN-E469170 [cSTB-10-P11]">
      <seq>aaaaaatggagtttttgggatcacaaatggtattatgttgtgtctttttgttgttcctaacaggaagcttggcacaagatgttggtacaattgtgacaagtgacttgttcaacgagatgctcaagaatcgaaacgatgatagatgtcctgccaagggcttctacacttatgatgcattcatagctgcagccaattcgttttcaggttttggtactactggtgatgatactgtccgtaagaaggaaattgctgcctttttcggtcaaacttctcacgaaactactggtggtagcctaagtgcagatggtccatttgccggaggatattgctttcttagggaaggcaaccaaatgggaagtggattttatggcagaggacctatccaattgacagggcaatctaactatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="97257" stop="98625"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97557" g_stop="97841" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97842" i_stop="98097" i_length="256">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98098" g_stop="98206" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="394" r_length="109" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98207" i_stop="98309" i_length="103">
            <donor d_prob="0.950" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98310" g_stop="98325" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="410" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E469170" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E469170" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97557" e_stop="97841"/>
          <exon e_start="98098" e_stop="98206"/>
          <exon e_start="98310" e_stop="98325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAATGGAGTTTTTGAGATCACAAATGGTATTATGTTGTGTCTTTTTGTTGTTCCTAACGGGAAGCTTTGCACAAGATGTTGGTACAATTGTGACAAGTGACTTGTTCAACGAGATGCTGAAGAATCGAAACGATGATAGATGTCCTGCCAAGGGCTTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCATTTCCAGGTTTTGGTACTACCGGTGATGATACTGCGCGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACTTCTCATGAAACTACTGGTAATTTTGGCTCTTACACCAAACTACTGTTATTTGTTCAACATGTAAGTACACAAAATTGGACTGACCGTATCCAGGATTTTGAGGTTCTAGATGCTCTACCGTTTGAACAGTAGCTTGGTTTCAATGTTAGCATAATTGTACATAGATCTGCCCCTGATTGTAACACAAAGTGTCTAGTTATCAAACGTTTTTAAGAAATGGACTTACGTTATATACACTACAATAAGTGAAGTATTTGGTTCTAATTTTGCAGGTGGTAGCCTAAGTGCTGATGGTCCATTTGCCGGAGGATATTGTTTTGTTAGGGAAGGCAATCAAATGGGAAGTGGATTTTATGGCAGAGGACCTATCCAATTGACAGGGTATGTAAAACAGAGGAAAATAGTTCATTTCTAACTAGGAAATATTAGATGAAAAAAACTCCATTTTGTAACTAATTTATTGATGATAAAATGAATTTTGCAGGCAATCTAACTATGAC</genome_strand>
        <mrna_strand>AAAAAATGGAGTTTTTGGGATCACAAATGGTATTATGTTGTGTCTTTTTGTTGTTCCTAACAGGAAGCTTGGCACAAGATGTTGGTACAATTGTGACAAGTGACTTGTTCAACGAGATGCTCAAGAATCGAAACGATGATAGATGTCCTGCCAAGGGCTTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTTCAGGTTTTGGTACTACTGGTGATGATACTGTCCGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACTTCTCACGAAACTACTG................................................................................................................................................................................................................................................................GTGGTAGCCTAAGTGCAGATGGTCCATTTGCCGGAGGATATTGCTTTCTTAGGGAAGGCAACCAAATGGGAAGTGGATTTTATGGCAGAGGACCTATCCAATTGACAGG.......................................................................................................GCAATCTAACTATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E694643" ref_strand="+" ref_description="SGN-E694643 [LH_Ea04H09](-)">
      <seq>aaaaatggagtttttgagatcacaaatggtattatgttgtgtctttttgttgttcctaacgggaagctttgcacaagatgttggtacaattgtgacaagtgacttgttcaacgagatgctgaagaatcgaaacgatgatagatgccctgccaagggcttctacacttatgatgccttcatagctgcagccaattcatttccaggttttggtacaactggtgatgatactgcgcgtaagaaggaaattgctgcctttttcggtcaaacttctcatgaaactactggtggtagcctaagtgcagatggtccatttgccggaggatattgttttgttagggaaggcaatcaaatgggaagtggattttatggcagaggacctatccaattgacagggcaatctaactatgacttagctgggcaagcaattggacaagacttagttaacaaccctgacttagtagctacagatgcaactgtatcttttaaaacagcaatatggttctggatgaccgcacaaggcaataagccatcatgccacgatgttatcacagggcaatggacgccatcagcagccgatgcatcagcaaatagacaaccaggctacggtgtcattacaaacataattaacggtggaattgaatgtggcaaaggacagaatccacaagtggaggatcggattggattctacagaaggtattgtacgatattgaatgttgctcccggggacaaccttgattgctacaaccagaggaactttgctgaggcctagctttgtgttttagtcatgatgatgtctgaatataagggaatgaataagggattttggatgccccatttggaatatgtagttttttattttgtcaaacacaaataagagttaatgtatcttataatatattataccacatgtactattaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="97258" stop="99122"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97558" g_stop="97841" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97842" i_stop="98097" i_length="256">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98098" g_stop="98206" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="393" r_length="109" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98207" i_stop="98309" i_length="103">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98310" g_stop="98821" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="916" r_length="523" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="917" polyA_stop="929"/>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E694643" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>905</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E694643" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97558" e_stop="97841"/>
          <exon e_start="98098" e_stop="98206"/>
          <exon e_start="98310" e_stop="98821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATGGAGTTTTTGAGATCACAAATGGTATTATGTTGTGTCTTTTTGTTGTTCCTAACGGGAAGCTTTGCACAAGATGTTGGTACAATTGTGACAAGTGACTTGTTCAACGAGATGCTGAAGAATCGAAACGATGATAGATGTCCTGCCAAGGGCTTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCATTTCCAGGTTTTGGTACTACCGGTGATGATACTGCGCGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACTTCTCATGAAACTACTGGTAATTTTGGCTCTTACACCAAACTACTGTTATTTGTTCAACATGTAAGTACACAAAATTGGACTGACCGTATCCAGGATTTTGAGGTTCTAGATGCTCTACCGTTTGAACAGTAGCTTGGTTTCAATGTTAGCATAATTGTACATAGATCTGCCCCTGATTGTAACACAAAGTGTCTAGTTATCAAACGTTTTTAAGAAATGGACTTACGTTATATACACTACAATAAGTGAAGTATTTGGTTCTAATTTTGCAGGTGGTAGCCTAAGTGCTGATGGTCCATTTGCCGGAGGATATTGTTTTGTTAGGGAAGGCAATCAAATGGGAAGTGGATTTTATGGCAGAGGACCTATCCAATTGACAGGGTATGTAAAACAGAGGAAAATAGTTCATTTCTAACTAGGAAATATTAGATGAAAAAAACTCCATTTTGTAACTAATTTATTGATGATAAAATGAATTTTGCAGGCAATCTAACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTC------T----GAATGAATAAGGGATTTTGGATG-CCCATTTGGAATATGTAGTTTCTTATTTTGTC-TACACAAATAAGAGTTTCTTTTATCTTATAACATAATATACCACATGTACTATT</genome_strand>
        <mrna_strand>AAAAATGGAGTTTTTGAGATCACAAATGGTATTATGTTGTGTCTTTTTGTTGTTCCTAACGGGAAGCTTTGCACAAGATGTTGGTACAATTGTGACAAGTGACTTGTTCAACGAGATGCTGAAGAATCGAAACGATGATAGATGCCCTGCCAAGGGCTTCTACACTTATGATGCCTTCATAGCTGCAGCCAATTCATTTCCAGGTTTTGGTACAACTGGTGATGATACTGCGCGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACTTCTCATGAAACTACTG................................................................................................................................................................................................................................................................GTGGTAGCCTAAGTGCAGATGGTCCATTTGCCGGAGGATATTGTTTTGTTAGGGAAGGCAATCAAATGGGAAGTGGATTTTATGGCAGAGGACCTATCCAATTGACAGG.......................................................................................................GCAATCTAACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCAGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATATTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACAACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATATAAGGGAATGAATAAGGGATTTTGGATGCCCCATTTGGAATATGTAGTTTTTTATTTTGTCAAACACAAATAAGAG-TTAATGTATCTTATAATATATTATACCACATGTACTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E744952" ref_strand="+" ref_description="SGN-E744952 [GI|19186]">
      <seq>gtttttgagatcacaaatggtattatgttgtgtctttttgttgttcctaacgggaagctttgcacaagatgttggtacaattgtgacaagtgacttgttcaacgagatgctgaagaatcgaaacgatgatagatgtcctgccaagggcttctacacttatgatgcattcatagctgcagccaattcatttccaggttttggtactaccggtgatgatactgcgcgtaagaaggaaattgctgcctttttcggtcaaacttctcatgaaactactggtggtagcctaagtgctgatggtccatttgccggaggatattgttttgttagggaaggcaatcaaatgggaagtggattttatggcagaggacctatccaattgacagggcaatctaactatgacttagctgggcaagcaattggacaagacttagttaacaaccctgacttagtagctacagatgcaactgtatcttttaaaacagcaatatggttctggatgaccgcacaaggcaataagccatcatgccacgatgttatcacagggcaatggacgccatcagccgccgatgcatcagcaaatagacaaccaggctacggtgtcattacaaacataattaacggtggaattgaatgtggcaaaggacagaatccacaagtggaggatcggattggattctacagaaggtattgtacgatactgaatgttgctcccggggacaaccttgattgctacgaccagaggaactttgctgaggcctagctttgtgttttagtcatgatgatgtctgaatgaataagggattttggatgcccatttggaatatgtagtttcttattttgtctacacaaataagagtttcttttatcttataacataatataccacatgtactattatctcatcgatattttaatttcccctttgttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="97267" stop="99154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97567" g_stop="97841" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97842" i_stop="98097" i_length="256">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98098" g_stop="98206" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="384" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98207" i_stop="98309" i_length="103">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98310" g_stop="98854" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="929" r_length="545" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E744952" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>929</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E744952" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97567" e_stop="97841"/>
          <exon e_start="98098" e_stop="98206"/>
          <exon e_start="98310" e_stop="98854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTGAGATCACAAATGGTATTATGTTGTGTCTTTTTGTTGTTCCTAACGGGAAGCTTTGCACAAGATGTTGGTACAATTGTGACAAGTGACTTGTTCAACGAGATGCTGAAGAATCGAAACGATGATAGATGTCCTGCCAAGGGCTTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCATTTCCAGGTTTTGGTACTACCGGTGATGATACTGCGCGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACTTCTCATGAAACTACTGGTAATTTTGGCTCTTACACCAAACTACTGTTATTTGTTCAACATGTAAGTACACAAAATTGGACTGACCGTATCCAGGATTTTGAGGTTCTAGATGCTCTACCGTTTGAACAGTAGCTTGGTTTCAATGTTAGCATAATTGTACATAGATCTGCCCCTGATTGTAACACAAAGTGTCTAGTTATCAAACGTTTTTAAGAAATGGACTTACGTTATATACACTACAATAAGTGAAGTATTTGGTTCTAATTTTGCAGGTGGTAGCCTAAGTGCTGATGGTCCATTTGCCGGAGGATATTGTTTTGTTAGGGAAGGCAATCAAATGGGAAGTGGATTTTATGGCAGAGGACCTATCCAATTGACAGGGTATGTAAAACAGAGGAAAATAGTTCATTTCTAACTAGGAAATATTAGATGAAAAAAACTCCATTTTGTAACTAATTTATTGATGATAAAATGAATTTTGCAGGCAATCTAACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATGAATAAGGGATTTTGGATGCCCATTTGGAATATGTAGTTTCTTATTTTGTCTACACAAATAAGAGTTTCTTTTATCTTATAACATAATATACCACATGTACTATTATCTCATCGATATTTTAATTTCCCCTTTGTTTA</genome_strand>
        <mrna_strand>GTTTTTGAGATCACAAATGGTATTATGTTGTGTCTTTTTGTTGTTCCTAACGGGAAGCTTTGCACAAGATGTTGGTACAATTGTGACAAGTGACTTGTTCAACGAGATGCTGAAGAATCGAAACGATGATAGATGTCCTGCCAAGGGCTTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCATTTCCAGGTTTTGGTACTACCGGTGATGATACTGCGCGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACTTCTCATGAAACTACTG................................................................................................................................................................................................................................................................GTGGTAGCCTAAGTGCTGATGGTCCATTTGCCGGAGGATATTGTTTTGTTAGGGAAGGCAATCAAATGGGAAGTGGATTTTATGGCAGAGGACCTATCCAATTGACAGG.......................................................................................................GCAATCTAACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATGAATAAGGGATTTTGGATGCCCATTTGGAATATGTAGTTTCTTATTTTGTCTACACAAATAAGAGTTTCTTTTATCTTATAACATAATATACCACATGTACTATTATCTCATCGATATTTTAATTTCCCCTTTGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E689491" ref_strand="+" ref_description="SGN-E689491 [LH_Ea01A17]">
      <seq>cacgtttcatagctgcagccaattcatttccaggttttggtacaactggtgatgatactgcgcgtaagaaggaaattgctgcctttttcggtcaaacttctcatgaaactactggtggtagcctaagtgcagatggtccatttgccggaggatattgttttgttagggaaggcaatcaaatgggaagtggattttatggcagaggacctatccaattgacagggcaatctaactatgacttagctgggcaagcaattggacaagacttagttaacaaccctgacttagtagctacagatgcaactgtatcttttaaaacagcaatatggttctggatgaccgcacaaggcaataagccatcatgccacgatgttatcacagggcaatggacgccatcagcagccgatgcatcagcaaatagacaaccaggctacggtgtcattacaaacataattaacggtggaattgaatgtggcaaaggacagaatccacaagtggaggatcggattggattctacagaaggtattgtacgatattgaatgttgctcccggggacaaccttgattgctacaaccagaggaactttgctgaggcctagctttgtgttttagtcatgatgatgtctgaatataagggaatgaataagggattttggatgccccatttggaatatgtagttttttattttgtcaaacacaaataagagtttctttatcttataatatattataccacatgtactattatctcatcgatattttaattttccctttgtttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="97433" stop="99154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97727" g_stop="97841" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97842" i_stop="98097" i_length="256">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98098" g_stop="98206" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="223" r_length="109" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98207" i_stop="98309" i_length="103">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98310" g_stop="98855" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="780" r_length="557" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E689491" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>770</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689491" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97727" e_stop="97841"/>
          <exon e_start="98098" e_stop="98206"/>
          <exon e_start="98310" e_stop="98855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGCATTCATAGCTGCAGCCAATTCATTTCCAGGTTTTGGTACTACCGGTGATGATACTGCGCGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACTTCTCATGAAACTACTGGTAATTTTGGCTCTTACACCAAACTACTGTTATTTGTTCAACATGTAAGTACACAAAATTGGACTGACCGTATCCAGGATTTTGAGGTTCTAGATGCTCTACCGTTTGAACAGTAGCTTGGTTTCAATGTTAGCATAATTGTACATAGATCTGCCCCTGATTGTAACACAAAGTGTCTAGTTATCAAACGTTTTTAAGAAATGGACTTACGTTATATACACTACAATAAGTGAAGTATTTGGTTCTAATTTTGCAGGTGGTAGCCTAAGTGCTGATGGTCCATTTGCCGGAGGATATTGTTTTGTTAGGGAAGGCAATCAAATGGGAAGTGGATTTTATGGCAGAGGACCTATCCAATTGACAGGGTATGTAAAACAGAGGAAAATAGTTCATTTCTAACTAGGAAATATTAGATGAAAAAAACTCCATTTTGTAACTAATTTATTGATGATAAAATGAATTTTGCAGGCAATCTAACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTC------T----GAATGAATAAGGGATTTTGGATG-CCCATTTGGAATATGTAGTTTCTTATTTTGTC-TACACAAATAAGAGTTTCTTTTATCTTATAACATAATATACCACATGTACTATTATCTCATCGATATTTTAATTTCCCCTTTGTTTAC</genome_strand>
        <mrna_strand>CACG-TTTCATAGCTGCAGCCAATTCATTTCCAGGTTTTGGTACAACTGGTGATGATACTGCGCGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACTTCTCATGAAACTACTG................................................................................................................................................................................................................................................................GTGGTAGCCTAAGTGCAGATGGTCCATTTGCCGGAGGATATTGTTTTGTTAGGGAAGGCAATCAAATGGGAAGTGGATTTTATGGCAGAGGACCTATCCAATTGACAGG.......................................................................................................GCAATCTAACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCAGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATATTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACAACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATATAAGGGAATGAATAAGGGATTTTGGATGCCCCATTTGGAATATGTAGTTTTTTATTTTGTCAAACACAAATAAGAGTTTC-TTTATCTTATAATATATTATACCACATGTACTATTATCTCATCGATATTTTAATTTTCCCTTTGTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E355060" ref_strand="+" ref_description="SGN-E355060 [cTOS-18-K13]">
      <seq>aggttttggtactaccggtgatgatactgcgcgtaagaaggaaattgctgcctttttcggtcaaacttctcatgaaactactggtggtagcctaagtgctgatggtccatttgccggaggatattgttttgttagggaaggcaatcaaatgggaagtggattttatggcagaggacctatccaattgacagggcaatctaactatgacttagctgggcaagcaattggacaagacttagttaacaaccctgacttagtagctacagatgcaactgtatcttttaaaacagcaatatggttctggatgaccgcacaaggcaataagccatcatgccacgatgttatcacagggcaatggacgccatcagccgccgatgcatcagcaaatagacaaccaggctacggtgtcattacaaacataattaacggtggaattgaatgtggcaaaggacagaatccacaagtggaggatcggattggattctacagaaggtattgtacgatactgaatgttgctcccggggacaaccttgattgctacgaccagaggaactttgctgaggcctagctttgtgttttagtcatgatgatgtctgaatgaataagggattttggatgcccatttggaatatgtagtttcttattttgtctacacaaataagagtttcttttatcttataacataatataccacatgtactattatctcatcgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="97459" stop="99133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97759" g_stop="97841" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97842" i_stop="98097" i_length="256">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98098" g_stop="98206" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="192" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98207" i_stop="98309" i_length="103">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98310" g_stop="98841" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="724" r_length="532" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E355060" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355060" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97759" e_stop="97841"/>
          <exon e_start="98098" e_stop="98206"/>
          <exon e_start="98310" e_stop="98841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTTTTGGTACTACCGGTGATGATACTGCGCGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACTTCTCATGAAACTACTGGTAATTTTGGCTCTTACACCAAACTACTGTTATTTGTTCAACATGTAAGTACACAAAATTGGACTGACCGTATCCAGGATTTTGAGGTTCTAGATGCTCTACCGTTTGAACAGTAGCTTGGTTTCAATGTTAGCATAATTGTACATAGATCTGCCCCTGATTGTAACACAAAGTGTCTAGTTATCAAACGTTTTTAAGAAATGGACTTACGTTATATACACTACAATAAGTGAAGTATTTGGTTCTAATTTTGCAGGTGGTAGCCTAAGTGCTGATGGTCCATTTGCCGGAGGATATTGTTTTGTTAGGGAAGGCAATCAAATGGGAAGTGGATTTTATGGCAGAGGACCTATCCAATTGACAGGGTATGTAAAACAGAGGAAAATAGTTCATTTCTAACTAGGAAATATTAGATGAAAAAAACTCCATTTTGTAACTAATTTATTGATGATAAAATGAATTTTGCAGGCAATCTAACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATGAATAAGGGATTTTGGATGCCCATTTGGAATATGTAGTTTCTTATTTTGTCTACACAAATAAGAGTTTCTTTTATCTTATAACATAATATACCACATGTACTATTATCTCATCGATATTTTAATT</genome_strand>
        <mrna_strand>AGGTTTTGGTACTACCGGTGATGATACTGCGCGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACTTCTCATGAAACTACTG................................................................................................................................................................................................................................................................GTGGTAGCCTAAGTGCTGATGGTCCATTTGCCGGAGGATATTGTTTTGTTAGGGAAGGCAATCAAATGGGAAGTGGATTTTATGGCAGAGGACCTATCCAATTGACAGG.......................................................................................................GCAATCTAACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATGAATAAGGGATTTTGGATGCCCATTTGGAATATGTAGTTTCTTATTTTGTCTACACAAATAAGAGTTTCTTTTATCTTATAACATAATATACCACATGTACTATTATCTCATCGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E349235" ref_strand="+" ref_description="SGN-E349235 [cTOS-2-F5]">
      <seq>aggttttggtactaccggtgatgatactgcgcgtaagaaggaaattgctgcctttttcggtcaaacttctcatgaaactactggtggtagcctaagtgctgatggtccatttgccggaggatattgttttgttagggaaggcaatcaaatgggaagtggattttatggcagaggacctatccaattgacagggcaatctaactatgacttagctgggcaagcaattggacaagacttagttaacaaccctgacttagtagctacagatgcaactgtatcttttaaaacagcaatatggttctggatgaccgcacaaggcaataagccatcatgccacgatgttatcacagggcaatggacgccatcagccgccgatgcatcagcaaatagacaaccaggctacggtgtcattacaaacataattaacggtggaattgaatgtggcaaaggacagaatccacaagtggaggatcggattggattctacagaaggtattgtacgatactgaatgttgctcccggggacaaccttgattgctacgaccagangaactttgctgaggcctagctttgtgttttagtcatgatgatgtctgaatgaataagggattttggatgcccattttgaatatgtagtttcttattttgtctacacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="97459" stop="99074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97759" g_stop="97841" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97842" i_stop="98097" i_length="256">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98098" g_stop="98206" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="192" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98207" i_stop="98309" i_length="103">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98310" g_stop="98774" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="657" r_length="465" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E349235" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349235" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97759" e_stop="97841"/>
          <exon e_start="98098" e_stop="98206"/>
          <exon e_start="98310" e_stop="98774"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTTTTGGTACTACCGGTGATGATACTGCGCGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACTTCTCATGAAACTACTGGTAATTTTGGCTCTTACACCAAACTACTGTTATTTGTTCAACATGTAAGTACACAAAATTGGACTGACCGTATCCAGGATTTTGAGGTTCTAGATGCTCTACCGTTTGAACAGTAGCTTGGTTTCAATGTTAGCATAATTGTACATAGATCTGCCCCTGATTGTAACACAAAGTGTCTAGTTATCAAACGTTTTTAAGAAATGGACTTACGTTATATACACTACAATAAGTGAAGTATTTGGTTCTAATTTTGCAGGTGGTAGCCTAAGTGCTGATGGTCCATTTGCCGGAGGATATTGTTTTGTTAGGGAAGGCAATCAAATGGGAAGTGGATTTTATGGCAGAGGACCTATCCAATTGACAGGGTATGTAAAACAGAGGAAAATAGTTCATTTCTAACTAGGAAATATTAGATGAAAAAAACTCCATTTTGTAACTAATTTATTGATGATAAAATGAATTTTGCAGGCAATCTAACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATGAATAAGGGATTTTGGATGCCCATTTGGAATATGTAGTTTCTTATTTTGTCTACACAA</genome_strand>
        <mrna_strand>AGGTTTTGGTACTACCGGTGATGATACTGCGCGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACTTCTCATGAAACTACTG................................................................................................................................................................................................................................................................GTGGTAGCCTAAGTGCTGATGGTCCATTTGCCGGAGGATATTGTTTTGTTAGGGAAGGCAATCAAATGGGAAGTGGATTTTATGGCAGAGGACCTATCCAATTGACAGG.......................................................................................................GCAATCTAACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGANGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATGAATAAGGGATTTTGGATGCCCATTTTGAATATGTAGTTTCTTATTTTGTCTACACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E689769" ref_strand="+" ref_description="SGN-E689769 [LH_Ea01M07]">
      <seq>tggaaattgctgcctttttcggtcaaacttctcatgaaactactggtggtagcctaagtgcagatggtccatttgccggaggatattgttttgttagggaaggcaatcaaatgggaagtggattttatggcagaggacctatccaattgacagggcaatctaactatgacttagctgggcaagcaattggacaagacttagttaacaaccctgacttagtagctacagatgcaactgtatcttttaaaacagcaatatggttctggatgaccgcacaaggcaataagccatcatgccacgatgttatcacagggcaatggacgccatcagcagccgatgcatcagcaaatagacaaccaggctacggtgtcattacaaacataattaacggtggaattgaatgtggcaaaggacagaatccacaagtggaggatcggattggattctacagaaggtattgtacgatattgaatgttgctcccggggacaaccttgattgctacaaccagaggaactttgctgaggcctagctttgtgttttagtcatgatgatgtctgaatataagggaatgaataagggattttggatgccccatttggaatatgtagttttttattttgtcaaacacaaataagagtttctttatcttataatatattataccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="97498" stop="99112"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97797" g_stop="97841" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97842" i_stop="98097" i_length="256">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98098" g_stop="98206" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="154" r_length="109" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98207" i_stop="98309" i_length="103">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98310" g_stop="98819" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="675" r_length="521" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E689769" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97797" e_stop="97841"/>
          <exon e_start="98098" e_stop="98206"/>
          <exon e_start="98310" e_stop="98819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAATTGCTGCCTTTTTCGGTCAAACTTCTCATGAAACTACTGGTAATTTTGGCTCTTACACCAAACTACTGTTATTTGTTCAACATGTAAGTACACAAAATTGGACTGACCGTATCCAGGATTTTGAGGTTCTAGATGCTCTACCGTTTGAACAGTAGCTTGGTTTCAATGTTAGCATAATTGTACATAGATCTGCCCCTGATTGTAACACAAAGTGTCTAGTTATCAAACGTTTTTAAGAAATGGACTTACGTTATATACACTACAATAAGTGAAGTATTTGGTTCTAATTTTGCAGGTGGTAGCCTAAGTGCTGATGGTCCATTTGCCGGAGGATATTGTTTTGTTAGGGAAGGCAATCAAATGGGAAGTGGATTTTATGGCAGAGGACCTATCCAATTGACAGGGTATGTAAAACAGAGGAAAATAGTTCATTTCTAACTAGGAAATATTAGATGAAAAAAACTCCATTTTGTAACTAATTTATTGATGATAAAATGAATTTTGCAGGCAATCTAACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTC------T----GAATGAATAAGGGATTTTGGATG-CCCATTTGGAATATGTAGTTTCTTATTTTGTC-TACACAAATAAGAGTTTCTTTTATCTTATAACATAATATACCACATGTACTA</genome_strand>
        <mrna_strand>TGGAAATTGCTGCCTTTTTCGGTCAAACTTCTCATGAAACTACTG................................................................................................................................................................................................................................................................GTGGTAGCCTAAGTGCAGATGGTCCATTTGCCGGAGGATATTGTTTTGTTAGGGAAGGCAATCAAATGGGAAGTGGATTTTATGGCAGAGGACCTATCCAATTGACAGG.......................................................................................................GCAATCTAACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCAGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATATTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACAACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATATAAGGGAATGAATAAGGGATTTTGGATGCCCCATTTGGAATATGTAGTTTTTTATTTTGTCAAACACAAATAAGAGTTTC-TTTATCTTATAATATATTATACCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E215018" ref_strand="+" ref_description="SGN-E215018 [cLEC-78-I9]">
      <seq>ttacgttatatacactacaataagtgaagtatttggttctaattttgcaggtggtagcctaagtgctgatggtccatttgccggaggatattgttttgttagggaaggcaatcaaatgggaagtggattttatggcagaggacctatccaattgacagggcaatctaactatgacttagctgggcaagcaattggacaagacttagttaacaaccctgacttagtagctacagatgcaactgtatcttttaaaacagcaatatggttctggatgaccgcacaaggcaataagccatcatgccacgatgttatcacagggcaatggacgccatcagccgccgatgcatcagcaaatagacaaccaggctacggtgtcattacaaacataattaacggtggaattgaatgtggcaaaggacagaatccacaagtggaggatcggattggattctacagaaggtattgtacgatactgaatgttgctcccggggacaaccttgattgctacgaccagaggaactttgctgaggcctagctttgtgttttagtcatgatgatgtctgaatgaataagggattttggatgcccatttggaatatgtagtttcttattttgtctacacaaataagagtttcttttatcttataacataatataccacatgtactattatctcatcgatattttaatttccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="97748" stop="99145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98048" g_stop="98206" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98207" i_stop="98309" i_length="103">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98310" g_stop="98845" g_length="536"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="695" r_length="536" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E215018" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E215018" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98048" e_stop="98206"/>
          <exon e_start="98310" e_stop="98845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACGTTATATACACTACAATAAGTGAAGTATTTGGTTCTAATTTTGCAGGTGGTAGCCTAAGTGCTGATGGTCCATTTGCCGGAGGATATTGTTTTGTTAGGGAAGGCAATCAAATGGGAAGTGGATTTTATGGCAGAGGACCTATCCAATTGACAGGGTATGTAAAACAGAGGAAAATAGTTCATTTCTAACTAGGAAATATTAGATGAAAAAAACTCCATTTTGTAACTAATTTATTGATGATAAAATGAATTTTGCAGGCAATCTAACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATGAATAAGGGATTTTGGATGCCCATTTGGAATATGTAGTTTCTTATTTTGTCTACACAAATAAGAGTTTCTTTTATCTTATAACATAATATACCACATGTACTATTATCTCATCGATATTTTAATTTCCC</genome_strand>
        <mrna_strand>TTACGTTATATACACTACAATAAGTGAAGTATTTGGTTCTAATTTTGCAGGTGGTAGCCTAAGTGCTGATGGTCCATTTGCCGGAGGATATTGTTTTGTTAGGGAAGGCAATCAAATGGGAAGTGGATTTTATGGCAGAGGACCTATCCAATTGACAGG.......................................................................................................GCAATCTAACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATGAATAAGGGATTTTGGATGCCCATTTGGAATATGTAGTTTCTTATTTTGTCTACACAAATAAGAGTTTCTTTTATCTTATAACATAATATACCACATGTACTATTATCTCATCGATATTTTAATTTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E539942" ref_strand="+" ref_description="SGN-E539942 [TUS-59-P11](-)">
      <seq>aatgggaagtggatttttatggcagaggacctatccaattgacagggcaatctaactatgacttagctgggcaagcaattggacaagacttagttaacaaccctgacttagtagctacagatgcaactgtatcttttaaaacagcaatatggttctggatgaccgcacaaggcaataagccatcatgccacgatgttatcacagggcaatggacgccatcagccgccgatgcatcagcaaatagacaaccaggctacggtgtcattacaaacataattaacggtggaattgaatgtggcaaaggacagaatccacaagtggaggatcggattggattctacagaaggtattgtacgatactgaatgttgctcccggggacaaccttgattgctacgaccagaggaactttgctgaggcctagctttgtgttttagtcatgatgatgtctgaatgaataagggattttggatgcccatttggaatatgtagtttcttattttgtctacacaaataagagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="97862" stop="99082"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98162" g_stop="98206" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98207" i_stop="98309" i_length="103">
            <donor d_prob="0.950" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98310" g_stop="98782" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="519" r_length="473" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E539942" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98162" e_stop="98206"/>
          <exon e_start="98310" e_stop="98782"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGGAAGTGGA-TTTTATGGCAGAGGACCTATCCAATTGACAGGGTATGTAAAACAGAGGAAAATAGTTCATTTCTAACTAGGAAATATTAGATGAAAAAAACTCCATTTTGTAACTAATTTATTGATGATAAAATGAATTTTGCAGGCAATCTAACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATGAATAAGGGATTTTGGATGCCCATTTGGAATATGTAGTTTCTTATTTTGTCTACACAAATAAGAGT</genome_strand>
        <mrna_strand>AATGGGAAGTGGATTTTTATGGCAGAGGACCTATCCAATTGACAGG.......................................................................................................GCAATCTAACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATGAATAAGGGATTTTGGATGCCCATTTGGAATATGTAGTTTCTTATTTTGTCTACACAAATAAGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E213103" ref_strand="+" ref_description="SGN-E213103 [cLEC-72-P14]">
      <seq>attgacagggcaatctaactatgacttagctgggcaagcaattggacaagacttagttaacaaccctgacttagtagctacagatgcaactgtatcttttaaaacagcaatatggttctggatgaccgcacaaggcaataagccatcatgccacgatgttatcacagggcaatggacgccatcagccgccgatgcatcagcaaatagacaaccaggctacggtgtcattacaaacataattaacggtggaattgaatgtggcaaaggacagaatccacaagtggaggatcggattggattctacagaaggtattgtacgatactgaatgttgctcccggggacaaccttgattgctacgaccagaggaactttgctgaggcctagctttgtgttttagtcatgatgatgtctgaatgaataagggattttggatgcccatttggaatatgtagtttcttattttgtctacacaaataagagtttcttttatcttataacataatataccacatgtactattatctcatcgatattttaatttcccctttgtttacgtagttcttgcatttacaatttgcactagtatatgagggaagcaattttaataattcaagtggctacagggagtgtatttagagggttaaaagtgtattctttctactgacttttagtagtagttgcacaaaaggcagtgaacttttgagtaaaaataaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="98004" stop="99317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98198" g_stop="98206" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98207" i_stop="98309" i_length="103">
            <donor d_prob="0.950" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98310" g_stop="99017" g_length="708"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="716" r_length="707" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E213103" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98198" e_stop="98206"/>
          <exon e_start="98310" e_stop="99017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGACAGGGTATGTAAAACAGAGGAAAATAGTTCATTTCTAACTAGGAAATATTAGATGAAAAAAACTCCATTTTGTAACTAATTTATTGATGATAAAATGAATTTTGCAGGCAATCTAACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATGAATAAGGGATTTTGGATGCCCATTTGGAATATGTAGTTTCTTATTTTGTCTACACAAATAAGAGTTTCTTTTATCTTATAACATAATATACCACATGTACTATTATCTCATCGATATTTTAATTTCCCCTTTGTTTACGTAGTTCTTGCATTTACAATTTGCACTAGTATATGAGGGAAGCAATTTTAATAATTCAAGTGGCTACAGGGAGTGTATTTAGAGGGTTAAAAGTGTATTCTTTCTACTGACTTTTAGTAGTAGTTGCACAAAAGGCAGTGAACTTTTGAGTAAAAAATAAAT</genome_strand>
        <mrna_strand>ATTGACAGG.......................................................................................................GCAATCTAACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATGAATAAGGGATTTTGGATGCCCATTTGGAATATGTAGTTTCTTATTTTGTCTACACAAATAAGAGTTTCTTTTATCTTATAACATAATATACCACATGTACTATTATCTCATCGATATTTTAATTTCCCCTTTGTTTACGTAGTTCTTGCATTTACAATTTGCACTAGTATATGAGGGAAGCAATTTTAATAATTCAAGTGGCTACAGGGAGTGTATTTAGAGGGTTAAAAGTGTATTCTTTCTACTGACTTTTAGTAGTAGTTGCACAAAAGGCAGTGAACTTTTGAGT-AAAAATAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E691062" ref_strand="+" ref_description="SGN-E691062 [LH_Ea05C04]">
      <seq>cgttatgacttagctgggcaagcaattggacaagacttagctaacaaccctgacttagtagctacagatgcaactgtatcttttaaaacagcaatatggttctggatgaccgcacaaggcaataagccatcatgccacgatgttatcacagggcaatggacgccatcagcagccgatgcatcagcaaatagacaaccaggctacggtgtcattacaaacataattaacggtggaattgaatgtggcaaaggacagaatccacaagtggaggatcggattggattctacagaaggtattgtacgatattgaatgttgctcccggggacaaccttgattgctacaaccagaggaactttgctgaggcctagctttgtgttttagtcatgatgatgtctgaatataagggaatgaataagggattttggatgccccatttggaatatgtagttttttattttgtcaaacacaaataagagtttctttatcttataatatattataccacatgtactattatctcatcgatattttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="98020" stop="99139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98317" g_stop="98838" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="534" polyA_stop="546"/>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E691062" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E691062" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98317" e_stop="98838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTC------T----GAATGAATAAGGGATTTTGGATG-CCCATTTGGAATATGTAGTTTCTTATTTTGTC-TACACAAATAAGAGTTTCTTTTATCTTATAACATAATATACCACATGTACTATTATCTCATCGATATTTTA</genome_strand>
        <mrna_strand>CGTTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGCTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCAGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATATTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACAACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATATAAGGGAATGAATAAGGGATTTTGGATGCCCCATTTGGAATATGTAGTTTTTTATTTTGTCAAACACAAATAAGAGTTTC-TTTATCTTATAATATATTATACCACATGTACTATTATCTCATCGATATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E691061" ref_strand="+" ref_description="SGN-E691061 [LH_Ea05C03]">
      <seq>tctatgacttagctgggcaagcaattggacaagacttacttaacaaccctgacttagtagctacagatgcaactgtatcttttaaaacagcaatatggttctggatgaccgcacaaggcaataagccatcatgccacgatgttatcacagggcaatggacgccatcagcagccgatgcatcagcaaatagacaaccaggctacggtgtcattacaaacataattaacggtggaattgaatgtggcaaaggacagaatccacaagtggaggatcggattggattctacagaaggtattgtacgatattgaatgttgctcccggggacaaccttgattgctacaaccagaggaactttgctgaggcctagctttgtgttttagtcatgatgatgtctgaatataagggaatgaataagggattttggatgccccatttggaatatgtagttttttattttgtcaaacacaaataagagtttctttatcttataatatattataccacatgtactattatctcatcgatattttccaaaaggacatcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="98019" stop="99137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98318" g_stop="98838" g_length="521"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="532" r_length="532" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E691061" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E691061" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98318" e_stop="98838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTC------T----GAATGAATAAGGGATTTTGGATG-CCCATTTGGAATATGTAGTTTCTTATTTTGTC-TACACAAATAAGAGTTTCTTTTATCTTATAACATAATATACCACATGTACTATTATCTCATCGATATTTTA</genome_strand>
        <mrna_strand>TCTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTACTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCAGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATATTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACAACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATATAAGGGAATGAATAAGGGATTTTGGATGCCCCATTTGGAATATGTAGTTTTTTATTTTGTCAAACACAAATAAGAGTTTC-TTTATCTTATAATATATTATACCACATGTACTATTATCTCATCGATATTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E694902" ref_strand="+" ref_description="SGN-E694902 [LH_Ea05C04](-)">
      <seq>ttatgacttagctgggcaagcaattggacaagacttagttaacaaccctgacttagtagctacagatgcatctgtatcttttaaaacagcaatatggttctggatgaccgcacaaggcaataagccatcatgccacgatgttatcacagggcaatggacgccatcagcagccgatgcatcagcaaatagacaaccaggttacggtgtcattacaaacataattaacggtggaattgaatgtggcaaaggacagaatccacaagtggaggatcggattggattctacagaaggtattgtacgatattgaatgttgctcccggggacaaccttgattgatacaaccagaggaactttgatgaggcctagctttgtgttttagtcatgatgatgtctgaatataagggaatgaataagggattttggatgccccatttggaatatgtagttttttattttgtggaacacaaataagagtttctttatcttataatatataaacggacatgtactattatctcatcgatatttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="98020" stop="99139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98319" g_stop="98838" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="532" polyA_stop="548"/>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E694902" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E694902" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98319" e_stop="98838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTC------T----GAATGAATAAGGGATTTTGGATG-CCCATTTGGAATATGTAGTTTCTTATTTTGT-CTACACAAATAAGAGTTTCTTTTATCTTATAACATAATATACCACATGTACTATTATCTCATCGATATTTTA</genome_strand>
        <mrna_strand>TTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCATCTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCAGCCGATGCATCAGCAAATAGACAACCAGGTTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATATTGAATGTTGCTCCCGGGGACAACCTTGATTGATACAACCAGAGGAACTTTGATGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATATAAGGGAATGAATAAGGGATTTTGGATGCCCCATTTGGAATATGTAGTTTTTTATTTTGTGGAACACAAATAAGAGTTTC-TTTATCTTATAATATATAAACGGACATGTACTATTATCTCATCGATATTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E214189" ref_strand="+" ref_description="SGN-E214189 [cLEC-77-K7]">
      <seq>attggacaagacttagttaacaaccctgacttagtagctacagatgcaactgtatcttttaaaacagcaatatggttctggatgaccgcacaaggcaataagccatcatgccacgatgttatcacagggcaatggacgccatcagccgccgatgcatcagcaaatagacaaccaggctacggtgtcattacaaacataattaacggtggaattgaatgtggcaaaggacagaatccacaagtggaggatcggattggattctacagaaggtattgtacgatactgaatgttgctcccggggacaaccttgattgctacgaccagaggaactttgctgaggcctagctttgtgttttagtcatgatgatgtctgaatgaataagggattttggatgcccatttggaatatgtagtttcttattttgtctacacaaataagagtttcttttatcttataacataatataccacatgtactat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="98041" stop="99120"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98341" g_stop="98820" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="480" r_length="480" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E214189" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214189" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98341" e_stop="98820"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATGAATAAGGGATTTTGGATGCCCATTTGGAATATGTAGTTTCTTATTTTGTCTACACAAATAAGAGTTTCTTTTATCTTATAACATAATATACCACATGTACTAT</genome_strand>
        <mrna_strand>ATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATGAATAAGGGATTTTGGATGCCCATTTGGAATATGTAGTTTCTTATTTTGTCTACACAAATAAGAGTTTCTTTTATCTTATAACATAATATACCACATGTACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E692055" ref_strand="+" ref_description="SGN-E692055 [LH_Ea07L13]">
      <seq>tgatgaccgcacaaggcaataagccatcatgccacgatgttatcacagggcaatggacgccatcagcagccgatgcatcagcaaatagacaaccaggctacggtgtcattacaaacataattaacggtggaattgaatgtggcaaaggacagaatccacaagtggaggatcggattggattctacagaaggtattgtacgatattgaatgttgctcccggggacaaccttgattgctacaaccagaggaactttgctgaggcctagctttgtgttttagtcatgatgatgtctgaatataagggaatgaataagggattttggatgccccatttggaatatgtagttttttattttgtcaaacacaaataagagtttctttatcttataatatattataccacatgtactattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="98121" stop="99122"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98420" g_stop="98821" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="413" r_length="413" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="414" polyA_stop="423"/>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E692055" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E692055" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98420" e_stop="98821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTC------T----GAATGAATAAGGGATTTTGGATG-CCCATTTGGAATATGTAGTTTCTTATTTTGTC-TACACAAATAAGAGTTTCTTTTATCTTATAACATAATATACCACATGTACTATT</genome_strand>
        <mrna_strand>TGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCAGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATATTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACAACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATATAAGGGAATGAATAAGGGATTTTGGATGCCCCATTTGGAATATGTAGTTTTTTATTTTGTCAAACACAAATAAGAGTTTC-TTTATCTTATAATATATTATACCACATGTACTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E695895" ref_strand="+" ref_description="SGN-E695895 [LH_Ea07L13](-)">
      <seq>ggatgaccgcacaaggcaataagccatcatgccacgatgttatcacagggcaatggacgccatcagcagccgatgcatcagcaaatagacaaccaggctacggtgtcattacaaacataattaacggtggaattgaatgtggcaaaggacagaatccacaagtggaggatcggattggattctacagaaggtattgtacgatattgaatgttgctcccggggacaaccttgattgctacaaccagaggaactttgctgaggcctagctttgtgttttagtcatgatgatgtctgaatataagggaatgaataagggattttggatgccccatttggaatatgtagttttttattttgtcaaacacaaataagagtttcattagtcttataatatattataccacatgtactataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="98120" stop="99122"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98420" g_stop="98818" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="411" r_length="411" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="412" polyA_stop="429"/>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E695895" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E695895" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98420" e_stop="98818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTC------T----GAATGAATAAGGGATTTTGGATG-CCCATTTGGAATATGTAGTTTCTTATTTTGTC-TACACAAATAAGAGTTTCTTTTATCTTATAACATAATATACCACATGTACT</genome_strand>
        <mrna_strand>GGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCAGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATATTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACAACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATATAAGGGAATGAATAAGGGATTTTGGATGCCCCATTTGGAATATGTAGTTTTTTATTTTGTCAAACACAAATAAGAGTTTCATTAGTCTTATAATATATTATACCACATGTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E218190" ref_strand="+" ref_description="SGN-E218190 [cLEL-23-B3](-)">
      <seq>caataagccatcatgccacgatgttatcacagggcaatggacgccatcagccgccgatgcatcagcaaatagacaaccaggctacggtgtcattacaaacataattaacggtggaattgaatgtggcaaaggacagaatccacaagtggaggatcggattggattctacagaaggtattgtacgatactgaatgttgctcccggggacaaccttgattgctacgaccagaggaactttgctgaggcctagctttgtgttttagtcatgatgatgtctgaatgaataagggattttggatgcccatttggaatatgtagtttcttattttgtctacacaaataagagtttcttttatcttataacataatataccacatgtactattatctcatcgaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="98136" stop="99133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98436" g_stop="98830" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="396" polyA_stop="420"/>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E218190" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E218190" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98436" e_stop="98830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATGAATAAGGGATTTTGGATGCCCATTTGGAATATGTAGTTTCTTATTTTGTCTACACAAATAAGAGTTTCTTTTATCTTATAACATAATATACCACATGTACTATTATCTCATCG</genome_strand>
        <mrna_strand>CAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATGAATAAGGGATTTTGGATGCCCATTTGGAATATGTAGTTTCTTATTTTGTCTACACAAATAAGAGTTTCTTTTATCTTATAACATAATATACCACATGTACTATTATCTCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E217834" ref_strand="+" ref_description="SGN-E217834 [cLEL-23-B3](-)">
      <seq>gccgatgcatcagcaaatagacaaccaggctacggtgtcattacaaacataattaacggtggaattgaatgtggcaaaggacagaatccccaagtggaggatcggattggattctacagaaggtattgtacgatactgaatgttgctcccggggacaaccttgattgctacgaccagaggaactttgctgaggcctagctttgtgttttagtcatgatgatgtctgaatgaataagggattttggatgcccctttggaatatgtagtttcttattttgtctacccaaataagagtttcttttatcttataacataatataccacatgtactattatctcatcgaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="98188" stop="99133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98488" g_stop="98830" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="343" r_length="343" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="344" polyA_stop="368"/>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E217834" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>343</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E217834" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98488" e_stop="98830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATGAATAAGGGATTTTGGATGCCCATTTGGAATATGTAGTTTCTTATTTTGTCTACACAAATAAGAGTTTCTTTTATCTTATAACATAATATACCACATGTACTATTATCTCATCG</genome_strand>
        <mrna_strand>GCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCCCAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATGAATAAGGGATTTTGGATGCCCCTTTGGAATATGTAGTTTCTTATTTTGTCTACCCAAATAAGAGTTTCTTTTATCTTATAACATAATATACCACATGTACTATTATCTCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E408450" ref_strand="+" ref_description="SGN-E408450 [PPI-11-K7]">
      <seq>agaaaaatgaatggaagaccagtacttttcggctctagtttaaagaacaagggaatgggtattcagctaagttttcagttgctggttgtgattatcactgcggttttagtccttacggctttgtcgatgtccagagggattagtcaagctccaaagttagtcgagaagcagacccagataagctcgttatctagctgtaatttctattctggtaaatgggtatttgataatcaatctcgccctctttataacgggacaaattgttcgttcatggatgatggaatggcttgtcagaagtttgggagaaagaatcttaactatctctactggaaatggcaacccaatgattgtgaccttccaagatttaatgctacggcgatgttggagaagttgaggaacaaaagggttgtttatgtgggagattcactcaataggaatcaatgggtttcaatggtctgcatattagaatcagaaattcctagtcatctcaaatatgttaactataatggctctttggtcacctttaaagctattgaatacaatgctactattgatttctactgggcaccattgttagttgaatcaaattgcgacgatccatcatatcatcgtgtgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="104593" stop="105991"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104891" g_stop="105252" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="362" r_length="362" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105253" i_stop="105333" i_length="81">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.967" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105334" g_stop="105505" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="534" r_length="172" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105506" i_stop="105608" i_length="103">
            <donor d_prob="0.696" d_score="1.00"/>
            <acceptor a_prob="0.762" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105609" g_stop="105691" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="617" r_length="83" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E408450" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E408450" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104891" e_stop="105252"/>
          <exon e_start="105334" e_stop="105505"/>
          <exon e_start="105609" e_stop="105691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAATGAATGGAAGACCAGTACTTTTCGGCTCTAGTTTAAAGAACAAGGGAATGTGTATTCAGCTAAGTTTTCAGTTGCTGGTAGTGACTATCACTGCAGTTTTAGTTCTTACGGTTTTGTCGATGTCCAGAGGTATTGGTCAAGCTCCAAAGTTAGTCGAGAAGCAGACCCAGATAAGCTCGTTATCTAGCTGTAATTTCTATTCTGGTAAATGGGTATTTGATAATCAATCTCGCCCTCTGTATAATGGGACAAATTGTTCGTTCATGGATGATGGAATGGCTTGTCAGAAGTTTGGGAGAAAGAATCTTGACTATCTCTACTGGAAATGGCAACCCAATGATTGTGACCTTCCTAGGTAGAGTATTATTCAGTTTTTCTTCAATTTTATCCTACTTTTTGTTCTGGGTATTTGATTATAGTTGTTGATTTTGCGAAGATTTAATGCTACGGCTATGCTGGAGAAGTTGAGGAACAAAAGGGTTGTTTATGTGGGAGATTCACTCAATAGGAATCAATGGGTTTCAATGGTCTGCATATTAGAATCAGAAATTCCTAATCATCTCAAATATGTTAACTATAATGGCTCTTTGGTCACCTTTAAAGCTATTGTGAGTTTCGAAAATTGCTTCTCCAATACGCTACCTTGTTCTTCTCCTTGAACTTTGCTTGCAGTTCTAATTAGTTTAATTTTGTTTTTTTACGTTAATGAAGGAGTACAATGCTACTATTGATTTCTACTGGGCACCATTATTAGTTGAATCAAATTGCGACGATCCATCATATCATCGTGTGGA</genome_strand>
        <mrna_strand>AGAAAAATGAATGGAAGACCAGTACTTTTCGGCTCTAGTTTAAAGAACAAGGGAATGGGTATTCAGCTAAGTTTTCAGTTGCTGGTTGTGATTATCACTGCGGTTTTAGTCCTTACGGCTTTGTCGATGTCCAGAGGGATTAGTCAAGCTCCAAAGTTAGTCGAGAAGCAGACCCAGATAAGCTCGTTATCTAGCTGTAATTTCTATTCTGGTAAATGGGTATTTGATAATCAATCTCGCCCTCTTTATAACGGGACAAATTGTTCGTTCATGGATGATGGAATGGCTTGTCAGAAGTTTGGGAGAAAGAATCTTAACTATCTCTACTGGAAATGGCAACCCAATGATTGTGACCTTCCAAG.................................................................................ATTTAATGCTACGGCGATGTTGGAGAAGTTGAGGAACAAAAGGGTTGTTTATGTGGGAGATTCACTCAATAGGAATCAATGGGTTTCAATGGTCTGCATATTAGAATCAGAAATTCCTAGTCATCTCAAATATGTTAACTATAATGGCTCTTTGGTCACCTTTAAAGCTATT.......................................................................................................GAATACAATGCTACTATTGATTTCTACTGGGCACCATTGTTAGTTGAATCAAATTGCGACGATCCATCATATCATCGTGTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E445100" ref_strand="+" ref_description="SGN-E445100 [cSTA-44-L19]">
      <seq>gccgttttagtccttacggctttgtcgatgtccagagggattagtcaatctccaaagttagtcgagaagcagacccagataagctcgttatctagctgtaatttctattctggtaaatgggtatttgataatcaatctcgccctctttataacgggacaaattgttcgttcatggatgatggaatggcttgtcagaagtttgggagaaagaatcttaactatctctactggaaatggcaacccaatgattgtgaccttccaagatttaatgctacggcgatgttggagaagttgaggaacaaaagggttgtttatgtgggagattcactcaataggaatcaatgggtttcaatggtctgcatattagaatcagaaattcctagtcatctcaaatatgtcaactataatggctctttggtcacctttaaagctattgaatacaatgctactattgatttctactgggcaccattgttagttgaatcaaattgcgacgatccatcatatcatcgtgtggacgagcgcatagtgagaatcgattcgatagaaaagcatgccagaatttggaaagatgctgatgtgcttgtttttaattcatatctatggtggagattgaatttgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="104690" stop="107435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104990" g_stop="105252" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="263" r_length="263" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105253" i_stop="105333" i_length="81">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.967" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105334" g_stop="105505" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="435" r_length="172" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105506" i_stop="105608" i_length="103">
            <donor d_prob="0.696" d_score="0.98"/>
            <acceptor a_prob="0.762" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105609" g_stop="105695" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="522" r_length="87" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105696" i_stop="107033" i_length="1338">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.497" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107034" g_stop="107135" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="624" r_length="102" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E445100" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E445100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104990" e_stop="105252"/>
          <exon e_start="105334" e_stop="105505"/>
          <exon e_start="105609" e_stop="105695"/>
          <exon e_start="107034" e_stop="107135"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGTTTTAGTTCTTACGGTTTTGTCGATGTCCAGAGGTATTGGTCAAGCTCCAAAGTTAGTCGAGAAGCAGACCCAGATAAGCTCGTTATCTAGCTGTAATTTCTATTCTGGTAAATGGGTATTTGATAATCAATCTCGCCCTCTGTATAATGGGACAAATTGTTCGTTCATGGATGATGGAATGGCTTGTCAGAAGTTTGGGAGAAAGAATCTTGACTATCTCTACTGGAAATGGCAACCCAATGATTGTGACCTTCCTAGGTAGAGTATTATTCAGTTTTTCTTCAATTTTATCCTACTTTTTGTTCTGGGTATTTGATTATAGTTGTTGATTTTGCGAAGATTTAATGCTACGGCTATGCTGGAGAAGTTGAGGAACAAAAGGGTTGTTTATGTGGGAGATTCACTCAATAGGAATCAATGGGTTTCAATGGTCTGCATATTAGAATCAGAAATTCCTAATCATCTCAAATATGTTAACTATAATGGCTCTTTGGTCACCTTTAAAGCTATTGTGAGTTTCGAAAATTGCTTCTCCAATACGCTACCTTGTTCTTCTCCTTGAACTTTGCTTGCAGTTCTAATTAGTTTAATTTTGTTTTTTTACGTTAATGAAGGAGTACAATGCTACTATTGATTTCTACTGGGCACCATTATTAGTTGAATCAAATTGCGACGATCCATCATATCATCGTGTGGAAGAACGCATAGTGCTGAGAGATCCCCTCATAATTTCCCCAAAGCGTAACCATGTGTGAATAAATTTTGAGCTAGTAGGGTTGCAGCCACGAGTAAGTCTTCCCTTGTTATTGTGTAGCCAGAATGCCGCAAAACTTCCATGCCTAAGCGAACTGTTGAGAGTACGTTTCGATTTCTGACTGTGTTAGCCTGGAAGTGCTTGTCCCAACCTTGTTTCTGAGCATGAACGCCCGCAAGCCAACATGTTAGTTGAAGCATCAGGGCGATTAGCAGCATGATATCAAAACGCTCTGAGCTGCTCGTTCGGCTATGGCGTAGGCCTAGTCCGTAGGCAGGACTTTTCAAGTCTCGGAAGGTTTCTTCAATCTGCATTCGCTTCGAATAGATATTAACAAGTTGTTTGGGTGTTCGAATTTCAACAGGTAAGTTAGTTGCTAGAATCCATGGCTCCTTTGCCGACGCTGAGTAGATTTTAGGTGACGGGTGGTGACAATGAGTCCGTGTCGAGCGCTGATTTTTTCGGCCTTTAGAGCGAGATTTATACAATAGAATTTGGCATGAGATTGGATTGCTTTTAGTCAGCCTCTTATAGCCTAAAGTCTTTGAGTGACTAGATGACATATCATGTAAGTTGCTGATAGGTTTCCAGTTTTCCGCTCCTAGGTCTGCATATTGTACTTTTCCTCTTACTCGACTTAACCAGTACCAACCCAGCTTCTCAACGGATTTATACCATGGCACTTTAAAGCCAGCATCACTGACAATGAGCGGTGTGGTGTTACTCGGTAGAATGCTCGCAAGGTCGGCTAGAAATTGGTCATGAGCTTTCTTTGAACATTGCTCTGAAAGCGGGAACGCTTTCTCATAAAGAGTAACAGAACGACCGTGTAGTGCGACTGAAGCTCGCAATACCATAAGCCGTTTTTGCTCACGGATATCAGACCAGTCAACAAGTACAATGGGCATCGTATTGCCCGAACAGATAAAGCTAGCATGCCAACGGTATACAGCGAGTCGCTCTTTGTGGAGGTGACGATTACCTAACAATCGGTCGATTCGTTTGATGTTATGTTTTGTTCTCGCTTTGGTTGGCAGGTTACGGCCAAGTTCGGTAAGAGTGAGAGTTTTACAGTCAAGTAAGGCGTGGCAAGCCAACGTTAAGCTGTTGAGTCGTTTTAAGTGTAATTCGGGGCAGAATTGGTAAAGAGAGTCGTGTAAAATATCGAGTTCGCACATTTTGTTGTCTGATTATTGATTTTTGGCGAAACCATTTGATCATATGACAAGATGTGTATCTACCTTAACTTAATGATTTTGATAAAAATCATTAGGGGATTCATCAGCGCATAGTGAGAATCGATTCGATAGAAAAACATGCCAGAATTTGGAATGATGCTGATGTGCTAGTTTTTAATTCATATCTATGGTGGAGATTGAATTTGAAG</genome_strand>
        <mrna_strand>GCCGTTTTAGTCCTTACGGCTTTGTCGATGTCCAGAGGGATTAGTCAATCTCCAAAGTTAGTCGAGAAGCAGACCCAGATAAGCTCGTTATCTAGCTGTAATTTCTATTCTGGTAAATGGGTATTTGATAATCAATCTCGCCCTCTTTATAACGGGACAAATTGTTCGTTCATGGATGATGGAATGGCTTGTCAGAAGTTTGGGAGAAAGAATCTTAACTATCTCTACTGGAAATGGCAACCCAATGATTGTGACCTTCCAAG.................................................................................ATTTAATGCTACGGCGATGTTGGAGAAGTTGAGGAACAAAAGGGTTGTTTATGTGGGAGATTCACTCAATAGGAATCAATGGGTTTCAATGGTCTGCATATTAGAATCAGAAATTCCTAGTCATCTCAAATATGTCAACTATAATGGCTCTTTGGTCACCTTTAAAGCTATT.......................................................................................................GAATACAATGCTACTATTGATTTCTACTGGGCACCATTGTTAGTTGAATCAAATTGCGACGATCCATCATATCATCGTGTGGACGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCATAGTGAGAATCGATTCGATAGAAAAGCATGCCAGAATTTGGAAAGATGCTGATGTGCTTGTTTTTAATTCATATCTATGGTGGAGATTGAATTTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E445101" ref_strand="+" ref_description="SGN-E445101 [cSTA-44-L19]">
      <seq>gccgttttagtccttacggctttgtcgatgtccagagggattagtcaatctccaaagttagtcgagaagcagacccagataagctcgttatctagctgtaatttctattctggtaaatgggtatttgataatcaatctcgccctctttataacgggacaaattgttcgttcatggatgatggaatggcttgtcagaagtttgggagaaagaatcttaactatctctactggaaatggcaacccaatgattgtgaccttccaagatttaatgctacggcgatgttggagaagttgaggaacaaaagggttgtttatgtgggagattcactcaataggaatcaatgggtttcaatggtctgcatattagaatcagaaattcctagtcatctcaaatatgtcaactataatggctctttggtcacctttaaagctattgaatacaatgctactattgatttctactgggcaccattgttagttgaatcaaattgcgacgatccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="104690" stop="105975"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104990" g_stop="105252" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="263" r_length="263" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105253" i_stop="105333" i_length="81">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.967" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105334" g_stop="105505" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="435" r_length="172" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105506" i_stop="105608" i_length="103">
            <donor d_prob="0.696" d_score="0.98"/>
            <acceptor a_prob="0.762" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105609" g_stop="105675" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="502" r_length="67" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E445101" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E445101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104990" e_stop="105252"/>
          <exon e_start="105334" e_stop="105505"/>
          <exon e_start="105609" e_stop="105675"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGTTTTAGTTCTTACGGTTTTGTCGATGTCCAGAGGTATTGGTCAAGCTCCAAAGTTAGTCGAGAAGCAGACCCAGATAAGCTCGTTATCTAGCTGTAATTTCTATTCTGGTAAATGGGTATTTGATAATCAATCTCGCCCTCTGTATAATGGGACAAATTGTTCGTTCATGGATGATGGAATGGCTTGTCAGAAGTTTGGGAGAAAGAATCTTGACTATCTCTACTGGAAATGGCAACCCAATGATTGTGACCTTCCTAGGTAGAGTATTATTCAGTTTTTCTTCAATTTTATCCTACTTTTTGTTCTGGGTATTTGATTATAGTTGTTGATTTTGCGAAGATTTAATGCTACGGCTATGCTGGAGAAGTTGAGGAACAAAAGGGTTGTTTATGTGGGAGATTCACTCAATAGGAATCAATGGGTTTCAATGGTCTGCATATTAGAATCAGAAATTCCTAATCATCTCAAATATGTTAACTATAATGGCTCTTTGGTCACCTTTAAAGCTATTGTGAGTTTCGAAAATTGCTTCTCCAATACGCTACCTTGTTCTTCTCCTTGAACTTTGCTTGCAGTTCTAATTAGTTTAATTTTGTTTTTTTACGTTAATGAAGGAGTACAATGCTACTATTGATTTCTACTGGGCACCATTATTAGTTGAATCAAATTGCGACGATCCAT</genome_strand>
        <mrna_strand>GCCGTTTTAGTCCTTACGGCTTTGTCGATGTCCAGAGGGATTAGTCAATCTCCAAAGTTAGTCGAGAAGCAGACCCAGATAAGCTCGTTATCTAGCTGTAATTTCTATTCTGGTAAATGGGTATTTGATAATCAATCTCGCCCTCTTTATAACGGGACAAATTGTTCGTTCATGGATGATGGAATGGCTTGTCAGAAGTTTGGGAGAAAGAATCTTAACTATCTCTACTGGAAATGGCAACCCAATGATTGTGACCTTCCAAG.................................................................................ATTTAATGCTACGGCGATGTTGGAGAAGTTGAGGAACAAAAGGGTTGTTTATGTGGGAGATTCACTCAATAGGAATCAATGGGTTTCAATGGTCTGCATATTAGAATCAGAAATTCCTAGTCATCTCAAATATGTCAACTATAATGGCTCTTTGGTCACCTTTAAAGCTATT.......................................................................................................GAATACAATGCTACTATTGATTTCTACTGGGCACCATTGTTAGTTGAATCAAATTGCGACGATCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E402622" ref_strand="+" ref_description="SGN-E402622 [PPC-8-A16]">
      <seq>ctggttggatactcatgtgaatcgcaccaagactcgagttttctttgttagcttatcaccgactcacaacagaggagaagattgggggaaggcaaatggtcagaattgctacgatgaaacagagccgatttctaatagagagtattggggatcagattcagatccagagatgatgaaattggtggaagtggccatcaagaaactgaatgagaagagtggtttcaaagttgagctgctcaacattactcaactttccgaatatagaaaggagggtcattcatcaatatacagaaagcactgggatcctctgaccaaagaacaattggcaaatccaagtagttatgcagattgtatacattggtgccttcctggagttcctgatatttggaatcattttttatatgcacaccttctttacttgtgattcatacacaatgagactaattggtacaaaaaaagcttatatatacatgttaatatcaaatcaaataatgcaagaattgtttttgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="107045" stop="108747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107344" g_stop="107415" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107416" i_stop="107922" i_length="507">
            <donor d_prob="0.991" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107923" g_stop="108308" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="458" r_length="386" r_score="0.943"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108309" i_stop="108394" i_length="86">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108395" g_stop="108447" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="511" r_length="53" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E402622" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E402622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107344" e_stop="107415"/>
          <exon e_start="107923" e_stop="108308"/>
          <exon e_start="108395" e_stop="108447"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGTTGGATACTCATGTTAATCGCTCCAAGACTCGAGTTTTCTTTGTTAGTTTATCACCTACACACAACAGGTATAGCATATGTTTCTCAAGTTTGCTCTTACTATTCAAATTAGTGTAGTGTTAATTAAGCGTGATCAGGAGATAAATGGTTGGTTTAGGCAAATGGTCAGTATAATTAAAGCTATTTTGAAAGTAGTATAATGGACTTCTCCATTGTTTTGACAAAATGAGTTCACTTATGAAGAACCTTTCAAACTTTAGTGCCTTCAACAACCCTTTCTAAAAGAATTTGTTTAGTTGCATCTCTGAATGCCTCCATTATTTATTCCTTTTGTAAACCGAAACCAAGCATGGGGATGGGAAGTCCATGAAAATAAGATTAAAAAAGTTGTAGCTGATGTCAAGCTCCGAGTACGAACAAGTCTTCGTGTAATATGAGATCATGTCATGAATCATCTTTTATTCTTTGACTTTGGCTTTATACATTGTATATACATCTTGTTGGATTTTGACTTTCAATTAGTTTATTGAGTCGTACGAGTACTAATTATATATTTGAATCATAAAAAATGGCAGGGGAGAAGATTGGGGGAAAGCAAATGGTCAGAACTGCTACGATGAAACAGAACCGATAACTAATAGAGAGTATTGGGGATCAGATTCAGATCCAAAGATGATGAAATTGGTGGAATCGGTCATCAAGAAACTGAATGAGAAGAGTGGTTTCAAAGTTGAGTTGCTCAACATTACTCAACTTTCTGAATATAGAAAGGAAGGTCATTCATCAATATACAGAAAGCACTGGGATCCTCTAACCAAAGAACAATTGGCAAATCCAAGTAGTTATGCAGATTGTATACATTGGTGCCTTCCTGGAGTTCCTGATGTTTGGAATCATTTTTTATATACACACCTAGTTTACTTGTGATCCATACACAACGCTACTAATTGGTACAAAAAAAAGATAGAATTAGTTTATTCTTGAATGAACTGAATCACCTTCATAGTTCAAGATTCAATTAGTGCACCATGTTGTTTATGAAAAAAGGTTTATATATACATGTTTATATCAAATCAAATAATGCAAGAAGTGTTTTTGTA</genome_strand>
        <mrna_strand>CTGGTTGGATACTCATGTGAATCGCACCAAGACTCGAGTTTTCTTTGTTAGCTTATCACCGACTCACAACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGAAGATTGGGGGAAGGCAAATGGTCAGAATTGCTACGATGAAACAGAGCCGATTTCTAATAGAGAGTATTGGGGATCAGATTCAGATCCAGAGATGATGAAATTGGTGGAAGTGGCCATCAAGAAACTGAATGAGAAGAGTGGTTTCAAAGTTGAGCTGCTCAACATTACTCAACTTTCCGAATATAGAAAGGAGGGTCATTCATCAATATACAGAAAGCACTGGGATCCTCTGACCAAAGAACAATTGGCAAATCCAAGTAGTTATGCAGATTGTATACATTGGTGCCTTCCTGGAGTTCCTGATATTTGGAATCATTTTTTATATGCACACCTTCTTTACTTGTGATTCATACACAATGAGACTAATTGGTACAAAAAAA......................................................................................GCTTATATATACATGTTAATATCAAATCAAATAATGCAAGAATTGTTTTTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E432831" ref_strand="+" ref_description="SGN-E432831 [STM-57-J21]">
      <seq>ctggttggatactcatgtgaatcgcaccaagactcgagttttctttgttagcttatcaccgactcacaacagaggagaagattgggggaaggcaaatggtcagaattgctacgatgaaacagagccgatttctaatagagagtattggggatcagattcagatccagagatgatgaaattggtggaagtggccatcaagaaactgaatgagaagagtggtttcaaagttgagctgctcaacattactcaactttccgaatatagaaaggagggtcattcatcaatatacagaaagcactgggatcctctgaccaaagaacaattggcaaatccaagtagttatgcagattgtatacattggtgccttcctggagttcctgatatttggaatcattttttatatgcacaccttctttacttgtgattcatacacaatgagactaattggtacaaaaaaagcttatatatacatgttaatatcaaatcaaataatgcaagaattgtttttgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="107045" stop="108747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107344" g_stop="107415" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107416" i_stop="107922" i_length="507">
            <donor d_prob="0.991" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107923" g_stop="108308" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="458" r_length="386" r_score="0.943"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108309" i_stop="108394" i_length="86">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108395" g_stop="108447" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="511" r_length="53" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="512" polyA_stop="521"/>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E432831" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E432831" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107344" e_stop="107415"/>
          <exon e_start="107923" e_stop="108308"/>
          <exon e_start="108395" e_stop="108447"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGTTGGATACTCATGTTAATCGCTCCAAGACTCGAGTTTTCTTTGTTAGTTTATCACCTACACACAACAGGTATAGCATATGTTTCTCAAGTTTGCTCTTACTATTCAAATTAGTGTAGTGTTAATTAAGCGTGATCAGGAGATAAATGGTTGGTTTAGGCAAATGGTCAGTATAATTAAAGCTATTTTGAAAGTAGTATAATGGACTTCTCCATTGTTTTGACAAAATGAGTTCACTTATGAAGAACCTTTCAAACTTTAGTGCCTTCAACAACCCTTTCTAAAAGAATTTGTTTAGTTGCATCTCTGAATGCCTCCATTATTTATTCCTTTTGTAAACCGAAACCAAGCATGGGGATGGGAAGTCCATGAAAATAAGATTAAAAAAGTTGTAGCTGATGTCAAGCTCCGAGTACGAACAAGTCTTCGTGTAATATGAGATCATGTCATGAATCATCTTTTATTCTTTGACTTTGGCTTTATACATTGTATATACATCTTGTTGGATTTTGACTTTCAATTAGTTTATTGAGTCGTACGAGTACTAATTATATATTTGAATCATAAAAAATGGCAGGGGAGAAGATTGGGGGAAAGCAAATGGTCAGAACTGCTACGATGAAACAGAACCGATAACTAATAGAGAGTATTGGGGATCAGATTCAGATCCAAAGATGATGAAATTGGTGGAATCGGTCATCAAGAAACTGAATGAGAAGAGTGGTTTCAAAGTTGAGTTGCTCAACATTACTCAACTTTCTGAATATAGAAAGGAAGGTCATTCATCAATATACAGAAAGCACTGGGATCCTCTAACCAAAGAACAATTGGCAAATCCAAGTAGTTATGCAGATTGTATACATTGGTGCCTTCCTGGAGTTCCTGATGTTTGGAATCATTTTTTATATACACACCTAGTTTACTTGTGATCCATACACAACGCTACTAATTGGTACAAAAAAAAGATAGAATTAGTTTATTCTTGAATGAACTGAATCACCTTCATAGTTCAAGATTCAATTAGTGCACCATGTTGTTTATGAAAAAAGGTTTATATATACATGTTTATATCAAATCAAATAATGCAAGAAGTGTTTTTGTA</genome_strand>
        <mrna_strand>CTGGTTGGATACTCATGTGAATCGCACCAAGACTCGAGTTTTCTTTGTTAGCTTATCACCGACTCACAACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGAAGATTGGGGGAAGGCAAATGGTCAGAATTGCTACGATGAAACAGAGCCGATTTCTAATAGAGAGTATTGGGGATCAGATTCAGATCCAGAGATGATGAAATTGGTGGAAGTGGCCATCAAGAAACTGAATGAGAAGAGTGGTTTCAAAGTTGAGCTGCTCAACATTACTCAACTTTCCGAATATAGAAAGGAGGGTCATTCATCAATATACAGAAAGCACTGGGATCCTCTGACCAAAGAACAATTGGCAAATCCAAGTAGTTATGCAGATTGTATACATTGGTGCCTTCCTGGAGTTCCTGATATTTGGAATCATTTTTTATATGCACACCTTCTTTACTTGTGATTCATACACAATGAGACTAATTGGTACAAAAAAA......................................................................................GCTTATATATACATGTTAATATCAAATCAAATAATGCAAGAATTGTTTTTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E432832" ref_strand="-" ref_description="SGN-E432832 [STM-57-J21]">
      <seq>ctggttggatactcatgtgaatcgcaccaagactcgagttttctttgttagcttatcaccgactcacaacagaggagaagattgggggaaggcaaatggtcagaattgctacgatgaaacagagccgatttctaatagagagtattggggatcagattcagatccagagatgatgaaattggtggaagtggccatcaagaaactgaatgagaagagtggtttcaaagttgagctgctcaacattactcaactttccgaatatagaaaggagggtcattcatcaatatacagaaagcactgggatcctctgaccaaagaacaattggcaaatccaagtagttatgcagattgtatacattggtgccttcctggagttcctgatatttggaatcattttttatatgcacaccttctttacttgtgattcatacacaatgagactaattggtacaaaaaaagcttatatatacatgttaatatcaaatcaaataaagcaagaattgttttttccaaaaaagaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="107045" stop="108744"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107344" g_stop="107415" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107416" i_stop="107922" i_length="507">
            <donor d_prob="0.991" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107923" g_stop="108308" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="458" r_length="386" r_score="0.943"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108309" i_stop="108394" i_length="86">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108395" g_stop="108444" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="508" r_length="50" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E432832" ref_strand="-">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E432832" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="107344" e_stop="107415"/>
          <exon e_start="107923" e_stop="108308"/>
          <exon e_start="108395" e_stop="108444"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGTTGGATACTCATGTTAATCGCTCCAAGACTCGAGTTTTCTTTGTTAGTTTATCACCTACACACAACAGGTATAGCATATGTTTCTCAAGTTTGCTCTTACTATTCAAATTAGTGTAGTGTTAATTAAGCGTGATCAGGAGATAAATGGTTGGTTTAGGCAAATGGTCAGTATAATTAAAGCTATTTTGAAAGTAGTATAATGGACTTCTCCATTGTTTTGACAAAATGAGTTCACTTATGAAGAACCTTTCAAACTTTAGTGCCTTCAACAACCCTTTCTAAAAGAATTTGTTTAGTTGCATCTCTGAATGCCTCCATTATTTATTCCTTTTGTAAACCGAAACCAAGCATGGGGATGGGAAGTCCATGAAAATAAGATTAAAAAAGTTGTAGCTGATGTCAAGCTCCGAGTACGAACAAGTCTTCGTGTAATATGAGATCATGTCATGAATCATCTTTTATTCTTTGACTTTGGCTTTATACATTGTATATACATCTTGTTGGATTTTGACTTTCAATTAGTTTATTGAGTCGTACGAGTACTAATTATATATTTGAATCATAAAAAATGGCAGGGGAGAAGATTGGGGGAAAGCAAATGGTCAGAACTGCTACGATGAAACAGAACCGATAACTAATAGAGAGTATTGGGGATCAGATTCAGATCCAAAGATGATGAAATTGGTGGAATCGGTCATCAAGAAACTGAATGAGAAGAGTGGTTTCAAAGTTGAGTTGCTCAACATTACTCAACTTTCTGAATATAGAAAGGAAGGTCATTCATCAATATACAGAAAGCACTGGGATCCTCTAACCAAAGAACAATTGGCAAATCCAAGTAGTTATGCAGATTGTATACATTGGTGCCTTCCTGGAGTTCCTGATGTTTGGAATCATTTTTTATATACACACCTAGTTTACTTGTGATCCATACACAACGCTACTAATTGGTACAAAAAAAAGATAGAATTAGTTTATTCTTGAATGAACTGAATCACCTTCATAGTTCAAGATTCAATTAGTGCACCATGTTGTTTATGAAAAAAGGTTTATATATACATGTTTATATCAAATCAAATAATGCAAGAAGTGTTTTT</genome_strand>
        <mrna_strand>CTGGTTGGATACTCATGTGAATCGCACCAAGACTCGAGTTTTCTTTGTTAGCTTATCACCGACTCACAACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGAAGATTGGGGGAAGGCAAATGGTCAGAATTGCTACGATGAAACAGAGCCGATTTCTAATAGAGAGTATTGGGGATCAGATTCAGATCCAGAGATGATGAAATTGGTGGAAGTGGCCATCAAGAAACTGAATGAGAAGAGTGGTTTCAAAGTTGAGCTGCTCAACATTACTCAACTTTCCGAATATAGAAAGGAGGGTCATTCATCAATATACAGAAAGCACTGGGATCCTCTGACCAAAGAACAATTGGCAAATCCAAGTAGTTATGCAGATTGTATACATTGGTGCCTTCCTGGAGTTCCTGATATTTGGAATCATTTTTTATATGCACACCTTCTTTACTTGTGATTCATACACAATGAGACTAATTGGTACAAAAAAA......................................................................................GCTTATATATACATGTTAATATCAAATCAAATAAAGCAAGAATTGTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E300318" ref_strand="+" ref_description="SGN-E300318 [cLEW-17-M2]">
      <seq>caaaattatgttttggggttttgttttgttttgtgtgttgggtacaagaggaggattgacacaagatgttggtgctcttattagtaaagacatatttgagagaatgctattgcatcgtaatgatgccaattgtaatgccaaaggattttacacttatgatgcttttataacagctgcaaggtcctttgctgcttttggaactactggaaacaccaacactcgtaagaaggaaatcgctgcatttttggcacaaacttctcttgaaacaaccggggggtggggaacagctccggatggtccattttcatggggatattgcttcaagcaagaacaaggtagcccaccagattactgtgttgcaaatcaacagtggccttgtgctcctggtaaaaaatactttggtcgaggtcccatccaaatatcctacaactacaactatggaccagcaggaagagccataggagttgatttgttaaacaatccagatgctgttgcaaatgatgcagtcgtttcattcaagacagccttgtggttctggatgacggcccagagaccaaagccatcggcccattttgttattactggtaaatggagaccaacaggagctgatttgtctgctggtcgtgtctctggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="108680" stop="110664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108980" g_stop="109251" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109252" i_stop="109925" i_length="674">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109926" g_stop="110079" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="426" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110080" i_stop="110155" i_length="76">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110156" g_stop="110364" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="635" r_length="209" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E300318" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300318" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108980" e_stop="109251"/>
          <exon e_start="109926" e_stop="110079"/>
          <exon e_start="110156" e_stop="110364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATTATGTTTTGGGGTTTTGTTTTGTTTTGTGTGTTGTCTACAAGAGGAGGATTGACACAAGATGTTGGTGCTCTTATTAGTAAAGACATATTTGAGAGAATGCTATTGCATCGTAATGATGCCAATTGTAATGCCAAAGGATTTTACACTTATGATGCTTTTATAACAGCTGCAAGGTCCTTTGCTGCTTTTGGAACTACTGGAAACACCAACACTCGTAAGAAGGAAATCGCTGCATTTTTGGCACAAACTTCTCTTGAAACAACCGGTACTATTTTCTTAAGTAATTATCCCTAGCTTGTTACAAGAACAAATAAAAGTCATTTTTACACTTTCTTTTGAGATCTTATTGACAACTTTTTAAGCAACCTAACATCCACAACCATGTACACAGGGGTGTCAAATGAGCGGCTTGGGTTGAAATTAGAAATATTTAAATGAGTTCAATAGAAACCGGGTTGAGTCTTGATCCACCCAAATTTATTTGAGCTCAAATGGGCTAAAAAACGGGTTGGGTCTTGACTCGTCCAATTTGACCCGATTAATCTCAATAATTTAACATATTGATATTTAACTTTTATAATCACAATTTTTGAATTTCCGCTCAAGAATTTTTTGTTAAAAAAGTAACAAATTGATAGACAAATCCATTCATATCTTCAATATAGGAACATATCTTAATAAAAAAATTTAAAACGAGTTGAAATTAGAAATTGAGTTGGACTCAATTGAGATATCTTTTCAAATAGGTTAAGCTTGAATAAGTTGATAATCAATCCAATTCAAATTATTTTAACCCAACCATTAAAATTCTGAGCGAGTTAGCTTCACTTTTGACACCCCTAAATTTCTCATGATAAAATTAACGTTATTTCCGAGTATGAAATCAATTGTTAGTAATGTAATACGAGATATAAAAGTATGAATTATGTTGATGATTAGGGGGGTGGGGAACAGCTCCGGATGGTCCATTTTCATGGGGATATTGCTTCAAGCAAGAACAAGGTAGCCCACCAGATTACTGTGTTGCAAATCAACAGTGGCCTTGTGCTCCTGGTAAAAAATACTTTGGTCGAGGTCCCATCCAAATATCCTAGTAAGTTTTGTTTTAATTTTTTCTACTTTCCACACATAATAGTAGGGTCTAAACTCATGAATTTAGTGATATGCAGCAACTACAACTATGGACCAGCAGGAAGAGCCATAGGAGTTGATTTGTTAAACAATCCAGATGCTGTTGCAAATGATGCAGTCGTTTCATTCAAGACAGCCTTGTGGTTCTGGATGACGGCCCAGAGACCAAAGCCATCGGCCCATTTTGTTATTACTGGTAAATGGAGACCAACAGGAGCTGATTTGTCTGCTGGTCGTGTCTCTGGCT</genome_strand>
        <mrna_strand>CAAAATTATGTTTTGGGGTTTTGTTTTGTTTTGTGTGTTGGGTACAAGAGGAGGATTGACACAAGATGTTGGTGCTCTTATTAGTAAAGACATATTTGAGAGAATGCTATTGCATCGTAATGATGCCAATTGTAATGCCAAAGGATTTTACACTTATGATGCTTTTATAACAGCTGCAAGGTCCTTTGCTGCTTTTGGAACTACTGGAAACACCAACACTCGTAAGAAGGAAATCGCTGCATTTTTGGCACAAACTTCTCTTGAAACAACCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGTGGGGAACAGCTCCGGATGGTCCATTTTCATGGGGATATTGCTTCAAGCAAGAACAAGGTAGCCCACCAGATTACTGTGTTGCAAATCAACAGTGGCCTTGTGCTCCTGGTAAAAAATACTTTGGTCGAGGTCCCATCCAAATATCCTA............................................................................CAACTACAACTATGGACCAGCAGGAAGAGCCATAGGAGTTGATTTGTTAAACAATCCAGATGCTGTTGCAAATGATGCAGTCGTTTCATTCAAGACAGCCTTGTGGTTCTGGATGACGGCCCAGAGACCAAAGCCATCGGCCCATTTTGTTATTACTGGTAAATGGAGACCAACAGGAGCTGATTTGTCTGCTGGTCGTGTCTCTGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E549153" ref_strand="+" ref_description="SGN-E549153 [TUS-67-M16]">
      <seq>ttaatcaccaacataattaatggaggaatagaatgtggaaaaggttctaatccaaaaatggagaatagaattgggttttacaagagatacttggagtcaatcctggggtcaatttggactgtgctaaacaaacgccttttggccagtaaaataaactactacatagtcaaataatgtacttcttccagccatagtgattggtgagaaatatgttatccaaaatatttaagttatataataaaacaaagttatattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="110070" stop="110934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110370" g_stop="110635" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E549153" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>266</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549153" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110370" e_stop="110635"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATCACCAACATAATTAATGGAGGAATAGAATGTGGAAAAGGTTCTAATCCAAAAATGGAGAATAGAATTGGGTTTTACAAGAGATACTTGGAGTCAATCCTGGGGTCAATTTGGACTGTGCTAAACAAACGCCTTTTGGCCAGTAAAATAAACTACTACATAGTCAAATAATGTACTTCTTCCAGCCATAGTGATTGGTGAGAAATATGTTATCCAAAATATTTAAGTTATATAATAAAACAAAGTTATATTATCAGAGGAAT</genome_strand>
        <mrna_strand>TTAATCACCAACATAATTAATGGAGGAATAGAATGTGGAAAAGGTTCTAATCCAAAAATGGAGAATAGAATTGGGTTTTACAAGAGATACTTGGAGTCAATCCTGGGGTCAATTTGGACTGTGCTAAACAAACGCCTTTTGGCCAGTAAAATAAACTACTACATAGTCAAATAATGTACTTCTTCCAGCCATAGTGATTGGTGAGAAATATGTTATCCAAAATATTTAAGTTATATAATAAAACAAAGTTATATTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E309771" ref_strand="+" ref_description="SGN-E309771 [cLEY-26-L10]">
      <seq>taatcaccaacataattaatggaggaatagaatgtggaaaaggttctaatccaaaaatggagaatagaattgggttttacaagagatacttggagtcaatcctggggtcaatttggactgtgctaaacaaacgccttttggccagtaaaataaactactacatagtcaaataatgtacttcttccagccatagtgattggtgagaaatatgttatccaaaatatttaagttatataataaaacaaagttatattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="110071" stop="110934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110371" g_stop="110635" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E309771" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>265</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309771" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110371" e_stop="110635"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCACCAACATAATTAATGGAGGAATAGAATGTGGAAAAGGTTCTAATCCAAAAATGGAGAATAGAATTGGGTTTTACAAGAGATACTTGGAGTCAATCCTGGGGTCAATTTGGACTGTGCTAAACAAACGCCTTTTGGCCAGTAAAATAAACTACTACATAGTCAAATAATGTACTTCTTCCAGCCATAGTGATTGGTGAGAAATATGTTATCCAAAATATTTAAGTTATATAATAAAACAAAGTTATATTATCAGAGGAAT</genome_strand>
        <mrna_strand>TAATCACCAACATAATTAATGGAGGAATAGAATGTGGAAAAGGTTCTAATCCAAAAATGGAGAATAGAATTGGGTTTTACAAGAGATACTTGGAGTCAATCCTGGGGTCAATTTGGACTGTGCTAAACAAACGCCTTTTGGCCAGTAAAATAAACTACTACATAGTCAAATAATGTACTTCTTCCAGCCATAGTGATTGGTGAGAAATATGTTATCCAAAATATTTAAGTTATATAATAAAACAAAGTTATATTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E345502" ref_strand="+" ref_description="SGN-E345502 [cTOF-18-G21]">
      <seq>aaccctaattttgtcctcacagaaggaagaagtggttacaacaagacgaagaaacagctgagaaaatggggaaattaccaccttccttaaggtcagctaactttgctgtaaacactctcatcaaaactccatctccatccccatccccatccccacctccaacctcaaaaccccattattatcccaaaaaatcacaatcacccaagaaaaaacccacatcaattactgaaccccagcttccatcatctattctagcctttgattcaacatctctttcagatgctaaaacccttttcaattctctgatttccagtaccagaaacccctctacagacaacaaattttataatgcagttcttcaatcattttcctccaattcaactctccaagattcaatctttttccttaatcacatgatcaaggttcaccctcctttctcccctgacaggtttacataccatgttctcctcgtccaatcttgtaagtctgttgacctttctttatcccctgttcatcaggttcttaatcttatgactaccaatggtttccctcctaataaggtctccacagacattgctgtgaggaccctttgctcttccggccacgaagagcaagccattgagctagtgaaagaactttcctccaaagactctccccctgatacatatacttataattttattattaggcatttgtgcaagaacaggcctttgagtaccatgaataactttattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="112953" stop="114288"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113253" g_stop="113988" g_length="736"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="736" r_length="736" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E345502" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345502" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113253" e_stop="113988"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCCTAATTTTGTCCTCACAGAAGGAAGAAGTGGTTACAACAAGACGAAGAAACAGCTGAGAAAATGGGGAAATTACCACCTTCCTTAAGGTCAGCTAACTTTGCTGTAAACACTCTCATCAAAACTCCATCTCCATCCCCATCCCCATCCCCACCTCCAACCTCAAAACCCCATTATTATCCCAAAAAATCACAATCACCCAAGAAAAAACCCACATCAATTACTGAACCCCAGCTTCCATCATCTATTCTAGCCTTTGATTCAACATCTCTTTCAGATGCTAAAACCCTTTTCAATTCTCTGATTTCCAGTACCAGAAACCCCTCTACAGACAACAAATTTTATAATGCAGTTCTTCAATCATTTTCCTCCAATTCAACTCTCCAAGATTCAATCTTTTTCCTTAATCACATGATCAAGGTTCACCCTCCTTTCTCCCCTGACAGGTTTACATACCATGTTCTCCTCGTCCAATCTTGTAAGTCTGTTGACCTTTCTTTATCCCCTGTTCATCAGGTTCTTAATCTTATGACTACCAATGGTTTCCCTCCTAATAAGGTCTCCACAGACATTGCTGTGAGGACCCTTTGCTCTTCCGGCCACGAAGAGCAAGCCATTGAGCTAGTGAAAGAACTTTCCTCCAAAGACTCTCCCCCTGATACATATACTTATAATTTTATTATTAGGCATTTGTGCAAGAACAGGCCTTTGAGTACCATGAATAACTTTATTAA</genome_strand>
        <mrna_strand>AACCCTAATTTTGTCCTCACAGAAGGAAGAAGTGGTTACAACAAGACGAAGAAACAGCTGAGAAAATGGGGAAATTACCACCTTCCTTAAGGTCAGCTAACTTTGCTGTAAACACTCTCATCAAAACTCCATCTCCATCCCCATCCCCATCCCCACCTCCAACCTCAAAACCCCATTATTATCCCAAAAAATCACAATCACCCAAGAAAAAACCCACATCAATTACTGAACCCCAGCTTCCATCATCTATTCTAGCCTTTGATTCAACATCTCTTTCAGATGCTAAAACCCTTTTCAATTCTCTGATTTCCAGTACCAGAAACCCCTCTACAGACAACAAATTTTATAATGCAGTTCTTCAATCATTTTCCTCCAATTCAACTCTCCAAGATTCAATCTTTTTCCTTAATCACATGATCAAGGTTCACCCTCCTTTCTCCCCTGACAGGTTTACATACCATGTTCTCCTCGTCCAATCTTGTAAGTCTGTTGACCTTTCTTTATCCCCTGTTCATCAGGTTCTTAATCTTATGACTACCAATGGTTTCCCTCCTAATAAGGTCTCCACAGACATTGCTGTGAGGACCCTTTGCTCTTCCGGCCACGAAGAGCAAGCCATTGAGCTAGTGAAAGAACTTTCCTCCAAAGACTCTCCCCCTGATACATATACTTATAATTTTATTATTAGGCATTTGTGCAAGAACAGGCCTTTGAGTACCATGAATAACTTTATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E722459" ref_strand="+" ref_description="SGN-E722459 [FC17BD04]">
      <seq>ggccgaattgacagaaggaagaagtgcttcaacaagacgaagaaacagctgataaaatggggaaattaccaccttccttaaggtcagctaactttgctgtaaacactctcatcaaaactccatctccatccccatccccatccccacctccaacctcaaaaccccattattatcccaaaaaatcacaatcacccaaaaaaaaacccacatcaattactgaaccccagcttccatcatctattctagcctttgattcaacatctctttcaaatgctaaaacccttttcaattctctgatttccagtaccaaaaacccctctacagacaacaaattttataatgcagttcttcaatcattttcctccaattcaactctccaagattcaatctttttccttaatcacatgatcaaggttcaccctcctttctcccctgacaggtttacataccatgttctcctcgtccaatcttgtaagtctgttgacctttctttatcccctgttcatcaggttcttaatcttatgactaccaatggtttccctcctaataaggtctccacagacattgctgtgaggaccctttgctcttccggccacgaagagcaagccattgagctagtgaaagaactttcctccaaagactctccccctgatacatatacttataattttattattaggcatttgtgcaagaacaggcctttgagtaccatgaataactttattaaagaaatgagggaaggttttgatataaaacctgatcttgttacatatacaattatgattgacaatgtttgtaatagtaaaaatctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="112969" stop="114374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113261" g_stop="114074" g_length="814"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="813" r_length="813" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E722459" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>814</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E722459" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113261" e_stop="114074"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTCCTCACAGAAGGAAGAAGTGGTTACAACAAGACGAAGAAACAGCTGAGAAAATGGGGAAATTACCACCTTCCTTAAGGTCAGCTAACTTTGCTGTAAACACTCTCATCAAAACTCCATCTCCATCCCCATCCCCATCCCCACCTCCAACCTCAAAACCCCATTATTATCCCAAAAAATCACAATCACCCAAGAAAAAACCCACATCAATTACTGAACCCCAGCTTCCATCATCTATTCTAGCCTTTGATTCAACATCTCTTTCAGATGCTAAAACCCTTTTCAATTCTCTGATTTCCAGTACCAGAAACCCCTCTACAGACAACAAATTTTATAATGCAGTTCTTCAATCATTTTCCTCCAATTCAACTCTCCAAGATTCAATCTTTTTCCTTAATCACATGATCAAGGTTCACCCTCCTTTCTCCCCTGACAGGTTTACATACCATGTTCTCCTCGTCCAATCTTGTAAGTCTGTTGACCTTTCTTTATCCCCTGTTCATCAGGTTCTTAATCTTATGACTACCAATGGTTTCCCTCCTAATAAGGTCTCCACAGACATTGCTGTGAGGACCCTTTGCTCTTCCGGCCACGAAGAGCAAGCCATTGAGCTAGTGAAAGAACTTTCCTCCAAAGACTCTCCCCCTGATACATATACTTATAATTTTATTATTAGGCATTTGTGCAAGAACAGGCCTTTGAGTACCATGAATAACTTTATTAAAGAAATGAGGGAAGGTTTTGATATAAAACCTGATCTTGTTACATATACAATTATGATTGACAATGTTTGTAATAGTAAAAATCTTA</genome_strand>
        <mrna_strand>GGCCGAATTGACAGAAGGAAGAAGTGCTT-CAACAAGACGAAGAAACAGCTGATAAAATGGGGAAATTACCACCTTCCTTAAGGTCAGCTAACTTTGCTGTAAACACTCTCATCAAAACTCCATCTCCATCCCCATCCCCATCCCCACCTCCAACCTCAAAACCCCATTATTATCCCAAAAAATCACAATCACCCAAAAAAAAACCCACATCAATTACTGAACCCCAGCTTCCATCATCTATTCTAGCCTTTGATTCAACATCTCTTTCAAATGCTAAAACCCTTTTCAATTCTCTGATTTCCAGTACCAAAAACCCCTCTACAGACAACAAATTTTATAATGCAGTTCTTCAATCATTTTCCTCCAATTCAACTCTCCAAGATTCAATCTTTTTCCTTAATCACATGATCAAGGTTCACCCTCCTTTCTCCCCTGACAGGTTTACATACCATGTTCTCCTCGTCCAATCTTGTAAGTCTGTTGACCTTTCTTTATCCCCTGTTCATCAGGTTCTTAATCTTATGACTACCAATGGTTTCCCTCCTAATAAGGTCTCCACAGACATTGCTGTGAGGACCCTTTGCTCTTCCGGCCACGAAGAGCAAGCCATTGAGCTAGTGAAAGAACTTTCCTCCAAAGACTCTCCCCCTGATACATATACTTATAATTTTATTATTAGGCATTTGTGCAAGAACAGGCCTTTGAGTACCATGAATAACTTTATTAAAGAAATGAGGGAAGGTTTTGATATAAAACCTGATCTTGTTACATATACAATTATGATTGACAATGTTTGTAATAGTAAAAATCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E312859" ref_strand="+" ref_description="SGN-E312859 [cTOA-8-I24]">
      <seq>tggttacaacaagacgaagaaacagctgagaaaatggggaaattaccaccttccttaaagtcagctaactttgctgtaaacactctcatcaaaactccatctccatccccatccccatccccacctccaacctcaaaaccccattattatcccaaaaaatcacaatcacccaagaaaaaacccacatcaattactgaaccccagcttccatcatctattctagcctttgattcaacatctctttcagatgctaaaacccttttcaattctctgatttccagtaccagaaacccctctacagacaacaaattttataatgcagttcttcaatcattttcctccaattcaactctccaagattcaatctttttccttaatcacatgatcaaggttcaccctcctttctcccctgacaggtttacataccatgttctcctcgtccaatcttgtaagtctgttgacctttctttatcccctgttcatcaggttcttaatcttatgactaccaatggtttccctcctaataaggtctccacagaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="112985" stop="114125"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113285" g_stop="113825" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="541" r_length="541" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E312859" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312859" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113285" e_stop="113825"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTACAACAAGACGAAGAAACAGCTGAGAAAATGGGGAAATTACCACCTTCCTTAAGGTCAGCTAACTTTGCTGTAAACACTCTCATCAAAACTCCATCTCCATCCCCATCCCCATCCCCACCTCCAACCTCAAAACCCCATTATTATCCCAAAAAATCACAATCACCCAAGAAAAAACCCACATCAATTACTGAACCCCAGCTTCCATCATCTATTCTAGCCTTTGATTCAACATCTCTTTCAGATGCTAAAACCCTTTTCAATTCTCTGATTTCCAGTACCAGAAACCCCTCTACAGACAACAAATTTTATAATGCAGTTCTTCAATCATTTTCCTCCAATTCAACTCTCCAAGATTCAATCTTTTTCCTTAATCACATGATCAAGGTTCACCCTCCTTTCTCCCCTGACAGGTTTACATACCATGTTCTCCTCGTCCAATCTTGTAAGTCTGTTGACCTTTCTTTATCCCCTGTTCATCAGGTTCTTAATCTTATGACTACCAATGGTTTCCCTCCTAATAAGGTCTCCACAGACA</genome_strand>
        <mrna_strand>TGGTTACAACAAGACGAAGAAACAGCTGAGAAAATGGGGAAATTACCACCTTCCTTAAAGTCAGCTAACTTTGCTGTAAACACTCTCATCAAAACTCCATCTCCATCCCCATCCCCATCCCCACCTCCAACCTCAAAACCCCATTATTATCCCAAAAAATCACAATCACCCAAGAAAAAACCCACATCAATTACTGAACCCCAGCTTCCATCATCTATTCTAGCCTTTGATTCAACATCTCTTTCAGATGCTAAAACCCTTTTCAATTCTCTGATTTCCAGTACCAGAAACCCCTCTACAGACAACAAATTTTATAATGCAGTTCTTCAATCATTTTCCTCCAATTCAACTCTCCAAGATTCAATCTTTTTCCTTAATCACATGATCAAGGTTCACCCTCCTTTCTCCCCTGACAGGTTTACATACCATGTTCTCCTCGTCCAATCTTGTAAGTCTGTTGACCTTTCTTTATCCCCTGTTCATCAGGTTCTTAATCTTATGACTACCAATGGTTTCCCTCCTAATAAGGTCTCCACAGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E301487" ref_strand="+" ref_description="SGN-E301487 [cLEW-23-C17]">
      <seq>ctctcatcaaaactccatctccatccccattcccatccccaccttcaacctcaaaaccccattattatcccaaaaaatcacaatcacccaagaaaaaacccacatcaattactgaaccccagcttccatcatctattctagcctttgattcaacatgtctttcagatgctaaaaccctttacaatgctctgatttacagtaccagaaacccctctacacacggcaaatattatcatgcatttcttcaatcattttcctccaattcaactctccaagattcaatctttttccttaatcacatgatcaacgttcaccctcctttctcccctgaccaggatacataccatgttctcctcggccaatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="113067" stop="114032"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113367" g_stop="113732" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="366" r_length="366" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E301487" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301487" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113367" e_stop="113732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCATCAAAACTCCATCTCCATCCCCATCCCCATCCCCACCTCCAACCTCAAAACCCCATTATTATCCCAAAAAATCACAATCACCCAAGAAAAAACCCACATCAATTACTGAACCCCAGCTTCCATCATCTATTCTAGCCTTTGATTCAACATCTCTTTCAGATGCTAAAACCCTTTTCAATTCTCTGATTTCCAGTACCAGAAACCCCTCTACAGACAACAAATTTTATAATGCAGTTCTTCAATCATTTTCCTCCAATTCAACTCTCCAAGATTCAATCTTTTTCCTTAATCACATGATCAAGGTTCACCCTCCTTTCTCCCCTGACAGGTTTACATACCATGTTCTCCTCGTCCAATCTT</genome_strand>
        <mrna_strand>CTCTCATCAAAACTCCATCTCCATCCCCATTCCCATCCCCACCTTCAACCTCAAAACCCCATTATTATCCCAAAAAATCACAATCACCCAAGAAAAAACCCACATCAATTACTGAACCCCAGCTTCCATCATCTATTCTAGCCTTTGATTCAACATGTCTTTCAGATGCTAAAACCCTTTACAATGCTCTGATTTACAGTACCAGAAACCCCTCTACACACGGCAAATATTATCATGCATTTCTTCAATCATTTTCCTCCAATTCAACTCTCCAAGATTCAATCTTTTTCCTTAATCACATGATCAACGTTCACCCTCCTTTCTCCCCTGACCAGGATACATACCATGTTCTCCTCGGCCAATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E425929" ref_strand="+" ref_description="SGN-E425929 [STM-45-F4]">
      <seq>atgatgttatgaagcagaatggtatgaagcttgagacaggatcttatggaacttttctcagagcactctgtcggaatggcagagtagcagaagcttatgaagtttttgattatgcaatagagagcaagagtttgactgatgttactgcttatacaacattggagagcactttgaagtggcttaagaaggctagagagcagggacttgtcatttgacttccattgctggtattctgattcatcttaagtgttttaattattcatgggcattgttaatcttgcttagtgatttgtcacttctccaaatgctcctctatgagcttgagaagtctaatcttcgcatcatttgatcctttttatgtactttttcatgttatgaaatacagaggagtgtttgaatttattgtacatatggcaggaagtatgtgtctgaattaattgtaaatataacaggagttctcaagctagaagagtatggaagattaactattttccgatcatttagaaaatgaacactaaatttctcgttgtatacnatacaccctgctgagctggaacctttatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0031D11-98q2S/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0031D11.1" temp_strand="+" temp_description="C02SLe0031D11.1  AC215451.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0031D11 sequenced_by:kribb upload_account_name:korea">
        <position start="114213" stop="115325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114513" g_stop="115022" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="511" r_length="511" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0031D11.1" gen_strand="+" ref_id="SGN-E425929" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0031D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E425929" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114513" e_stop="115022"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATGTTATGAAACAGAATGGTACGAAGCTTGAGACAGGATCTTATGGAACTTTTCTCAGAGCTCTCTGTCGGAATGGCAGAGTAGCAGATGCTTATGAAGTTTTTGATTATGCAATAGAGAGCAAGAGTTTGACTGATGTTGCTGCGTATACAACATTGGAGAGTACTTTGAAGTGGCTTAAGAAGGCTAGAGAGCAGGGACTTGTCATTTGATCTCCATTGCTGGTACTCTGATTTATCTGAAGTGTTGTACTTATTCATGGGCATTGTTAATCTTGCTTCGAGATTTGTCACTTCTCCAAGTGCTCCTCTATGAGCTTGAGAAGTCAAATCTTCTCATCATTTGATTCTTTTTATGTACTTTTTCATGTTATGAAATACACAGGAGTGTTTGAATTTATTATACATATGGCAGGAACTCTGTGTCTGAATTAATTGTAAATATAACAGGA-TTCTCAAGATAGAAGAGTATGGAACATTAACTATTTTCCACTCATTTAGAAAATGA</genome_strand>
        <mrna_strand>ATGATGTTATGAAGCAGAATGGTATGAAGCTTGAGACAGGATCTTATGGAACTTTTCTCAGAGCACTCTGTCGGAATGGCAGAGTAGCAGAAGCTTATGAAGTTTTTGATTATGCAATAGAGAGCAAGAGTTTGACTGATGTTACTGCTTATACAACATTGGAGAGCACTTTGAAGTGGCTTAAGAAGGCTAGAGAGCAGGGACTTGTCATTTGACTTCCATTGCTGGTATTCTGATTCATCTTAAGTGTTTTAATTATTCATGGGCATTGTTAATCTTGCTTAGTGATTTGTCACTTCTCCAAATGCTCCTCTATGAGCTTGAGAAGTCTAATCTTCGCATCATTTGATCCTTTTTATGTACTTTTTCATGTTATGAAATACAGAGGAGTGTTTGAATTTATTGTACATATGGCAGGAAGTATGTGTCTGAATTAATTGTAAATATAACAGGAGTTCTCAAGCTAGAAGAGTATGGAAGATTAACTATTTTCCGATCATTTAGAAAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>196</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="9344" PGL_stop="10626"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9344" e_stop="10240"/>
            <exon e_start="10599" e_stop="10626"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.985" e_score="1.000"/>
          <exon-only e_score="0.536"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9344" e_stop="10240" e_length="897"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.985">
            <gDNA_intron_boundary i_start="10241" i_stop="10598" i_length="358"/>
          </intron>
          <exon e_serial="2" e_score="0.536">
            <gDNA_exon_boundary e_start="10599" e_stop="10626" e_length="28"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9344" stop="10231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9805" stop="10240"/>
              <exon start="10599" stop="10626"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9805" stop="10240"/>
              <exon start="10599" stop="10626"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9805" stop="10233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285622" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTTATTGCCAAGCAATCCAAGGAGAAGCATATTGAGAAGCATGATAATGAATCTCTGAGTCAGAAACTGGATAACGGGGATGCAGTAACTAAGAAAAAAAGTAAGGGCGAGCAGAGTGAATTGCCACAGAATGGAACAAGAATGGTGCTTGATGGAGTGAGGCATCCAGTGCCGTATCACAAAAAAGAGCAAAAGGGAGGCGATGAATATCAGCAGACTTCTGCAAACCATTTGAAACTTGTACACAATGTTGTCAATGGTGCAACTACCAAGCAGCACAAGGTGAAAGAGAAGCGTATTGAGAAGCATGATAATGAATCTCTGAGTCAGAAACTGGATAACGGGGATGCAGTAACTAAGAAAAAAAGTAAGAGCGAGCAGAGTGAATTGCCACAAAATGGAACAAGAATGGTGCTTGAAGGAGTGAGGCATCCAGCGCCGTCTCACAAAAAAGAGCAAAAGGGAGGTGATAAATATCAGCATACTTCTGCAAACCATTTGAAACTTATACACAATGTTGTCAATGTTGCAACTACCAAGCAGCACAAGGTGAAAGAGAAGCGTGATTCCCCACAAGAACAGAAGGAAGAAAAGATTGAGTCGTTACATAGCAGAGAACTGGATTTGAAGGGTGGTAAGTTGGCTTCGGATGAGAAGAGTAAACCAAAAGCTGGAAAGCTAACACTTTCAGATCTTTTCAGGAGGTGAGTTTAACTGTATCTTGTAAAATCATATCCTCTTCAAAAGAGGAGCAAGAGCTGTGTCTTACCTTGTTTACCCCTTCTTTTTTACCATAGGAGTGTCTAGATCTCATGTACATGGCAATAGAATGAGCCGTAATTGCCATTTTTTGACTGTGACATGGTAATTATTTATTATTATTACATATCAATGGG : AACTGGAGGAAGAGGAAGAAGAATAAAT</gDNA_template>
            <first_frame> G  Y  C  Q  A  I  Q  G  E  A  Y  *  E  A  *  *  *  I  S  E  S  E  T  G  *  R  G  C  S  N  *  E  K  K  *  G  R  A  E  *  I  A  T  E  W  N  K  N  G  A  *  W  S  E  A  S  S  A  V  S  Q  K  R  A  K  G  R  R  *  I  S  A  D  F  C  K  P  F  E  T  C  T  Q  C  C  Q  W  C  N  Y  Q  A  A  Q  G  E  R  E  A  Y  *  E  A  *  *  *  I  S  E  S  E  T  G  *  R  G  C  S  N  *  E  K  K  *  E  R  A  E  *  I  A  T  K  W  N  K  N  G  A  *  R  S  E  A  S  S  A  V  S  Q  K  R  A  K  G  R  *  *  I  S  A  Y  F  C  K  P  F  E  T  Y  T  Q  C  C  Q  C  C  N  Y  Q  A  A  Q  G  E  R  E  A  *  F  P  T  R  T  E  G  R  K  D  *  V  V  T  *  Q  R  T  G  F  E  G  W  *  V  G  F  G  *  E  E  *  T  K  S  W  K  A  N  T  F  R  S  F  Q  E  V  S  L  T  V  S  C  K  I  I  S  S  S  K  E  E  Q  E  L  C  L  T  L  F  T  P  S  F  L  P  *  E  C  L  D  L  M  Y  M  A  I  E  *  A  V  I  A  I  F  *  L  *  H  G  N  Y  L  L  L  L  H  I  N  G  :  N  W  R  K  R  K  K  N  K  </first_frame>
            <second_frame>  V  I  A  K  Q  S  K  E  K  H  I  E  K  H  D  N  E  S  L  S  Q  K  L  D  N  G  D  A  V  T  K  K  K  S  K  G  E  Q  S  E  L  P  Q  N  G  T  R  M  V  L  D  G  V  R  H  P  V  P  Y  H  K  K  E  Q  K  G  G  D  E  Y  Q  Q  T  S  A  N  H  L  K  L  V  H  N  V  V  N  G  A  T  T  K  Q  H  K  V  K  E  K  R  I  E  K  H  D  N  E  S  L  S  Q  K  L  D  N  G  D  A  V  T  K  K  K  S  K  S  E  Q  S  E  L  P  Q  N  G  T  R  M  V  L  E  G  V  R  H  P  A  P  S  H  K  K  E  Q  K  G  G  D  K  Y  Q  H  T  S  A  N  H  L  K  L  I  H  N  V  V  N  V  A  T  T  K  Q  H  K  V  K  E  K  R  D  S  P  Q  E  Q  K  E  E  K  I  E  S  L  H  S  R  E  L  D  L  K  G  G  K  L  A  S  D  E  K  S  K  P  K  A  G  K  L  T  L  S  D  L  F  R  R  *  V  *  L  Y  L  V  K  S  Y  P  L  Q  K  R  S  K  S  C  V  L  P  C  L  P  L  L  F  Y  H  R  S  V  *  I  S  C  T  W  Q  *  N  E  P  *  L  P  F  F  D  C  D  M  V  I  I  Y  Y  Y  Y  I  S  M  G :   T  G  G  R  G  R  R  I  N </second_frame>
            <third_frame>   L  L  P  S  N  P  R  R  S  I  L  R  S  M  I  M  N  L  *  V  R  N  W  I  T  G  M  Q  *  L  R  K  K  V  R  A  S  R  V  N  C  H  R  M  E  Q  E  W  C  L  M  E  *  G  I  Q  C  R  I  T  K  K  S  K  R  E  A  M  N  I  S  R  L  L  Q  T  I  *  N  L  Y  T  M  L  S  M  V  Q  L  P  S  S  T  R  *  K  R  S  V  L  R  S  M  I  M  N  L  *  V  R  N  W  I  T  G  M  Q  *  L  R  K  K  V  R  A  S  R  V  N  C  H  K  M  E  Q  E  W  C  L  K  E  *  G  I  Q  R  R  L  T  K  K  S  K  R  E  V  I  N  I  S  I  L  L  Q  T  I  *  N  L  Y  T  M  L  S  M  L  Q  L  P  S  S  T  R  *  K  R  S  V  I  P  H  K  N  R  R  K  K  R  L  S  R  Y  I  A  E  N  W  I  *  R  V  V  S  W  L  R  M  R  R  V  N  Q  K  L  E  S  *  H  F  Q  I  F  S  G  G  E  F  N  C  I  L  *  N  H  I  L  F  K  R  G  A  R  A  V  S  Y  L  V  Y  P  F  F  F  T  I  G  V  S  R  S  H  V  H  G  N  R  M  S  R  N  C  H  F  L  T  V  T  W  *  L  F  I  I  I  T  Y  Q  W   : E  L  E  E  E  E  E  E  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0031D11.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9345" stop="10052"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>705</number_coding_nucleotides>
                  <number_encoded_amino_acids>235</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VIAKQSKEKHIEKHDNESLSQKLDNGDAVTKKKSKGEQSELPQNGTRMVLDGVRHPVPYHKKEQKGGDEYQQTSANHLKLVHNVVNGATTKQHKVKEKRIEKHDNESLSQKLDNGDAVTKKKSKSEQSELPQNGTRMVLEGVRHPAPSHKKEQKGGDKYQHTSANHLKLIHNVVNVATTKQHKVKEKRDSPQEQKEEKIESLHSRELDLKGGKLASDEKSKPKAGKLTLSDLFRR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="14585" PGL_stop="19826"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14585" e_stop="15033"/>
            <exon e_start="15124" e_stop="15265"/>
            <exon e_start="15375" e_stop="15431"/>
            <exon e_start="15598" e_stop="15643"/>
            <exon e_start="15756" e_stop="15887"/>
            <exon e_start="15978" e_stop="16112"/>
            <exon e_start="16413" e_stop="16502"/>
            <exon e_start="16583" e_stop="16804"/>
            <exon e_start="16895" e_stop="16993"/>
            <exon e_start="17091" e_stop="17269"/>
            <exon e_start="17347" e_stop="17768"/>
            <exon e_start="18517" e_stop="18532"/>
            <exon e_start="19816" e_stop="19826"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.975" e_score="0.982"/>
          <exon-intron don_prob="0.969" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.804" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.945" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.768" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.000" e_score="0.812"/>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14585" e_stop="15033" e_length="449"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="15034" i_stop="15123" i_length="90"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15124" e_stop="15265" e_length="142"/>
          </exon>
          <intron i_serial="2" don_prob="0.962" acc_prob="0.997">
            <gDNA_intron_boundary i_start="15266" i_stop="15374" i_length="109"/>
          </intron>
          <exon e_serial="3" e_score="0.982">
            <gDNA_exon_boundary e_start="15375" e_stop="15431" e_length="57"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="0.975">
            <gDNA_intron_boundary i_start="15432" i_stop="15597" i_length="166"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="15598" e_stop="15643" e_length="46"/>
          </exon>
          <intron i_serial="4" don_prob="0.969" acc_prob="0.973">
            <gDNA_intron_boundary i_start="15644" i_stop="15755" i_length="112"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="15756" e_stop="15887" e_length="132"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.804">
            <gDNA_intron_boundary i_start="15888" i_stop="15977" i_length="90"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="15978" e_stop="16112" e_length="135"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="0.996">
            <gDNA_intron_boundary i_start="16113" i_stop="16412" i_length="300"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="16413" e_stop="16502" e_length="90"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="16503" i_stop="16582" i_length="80"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="16583" e_stop="16804" e_length="222"/>
          </exon>
          <intron i_serial="8" don_prob="0.945" acc_prob="0.995">
            <gDNA_intron_boundary i_start="16805" i_stop="16894" i_length="90"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="16895" e_stop="16993" e_length="99"/>
          </exon>
          <intron i_serial="9" don_prob="0.989" acc_prob="0.768">
            <gDNA_intron_boundary i_start="16994" i_stop="17090" i_length="97"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="17091" e_stop="17269" e_length="179"/>
          </exon>
          <intron i_serial="10" don_prob="0.998" acc_prob="0.993">
            <gDNA_intron_boundary i_start="17270" i_stop="17346" i_length="77"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="17347" e_stop="17768" e_length="422"/>
          </exon>
          <intron i_serial="11" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="17769" i_stop="18516" i_length="748"/>
          </intron>
          <exon e_serial="12" e_score="0.812">
            <gDNA_exon_boundary e_start="18517" e_stop="18532" e_length="16"/>
          </exon>
          <intron i_serial="12" don_prob="0.990" acc_prob="0.000">
            <gDNA_intron_boundary i_start="18533" i_stop="19815" i_length="1283"/>
          </intron>
          <exon e_serial="13" e_score="0.909">
            <gDNA_exon_boundary e_start="19816" e_stop="19826" e_length="11"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14585" stop="15033"/>
              <exon start="15124" stop="15265"/>
              <exon start="15375" stop="15431"/>
              <exon start="15598" stop="15643"/>
              <exon start="15756" stop="15887"/>
              <exon start="15978" stop="16112"/>
              <exon start="16413" stop="16502"/>
              <exon start="16583" stop="16804"/>
              <exon start="16895" stop="16993"/>
              <exon start="17091" stop="17269"/>
              <exon start="17347" stop="17768"/>
              <exon start="18517" stop="18532"/>
              <exon start="19816" stop="19826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14606" stop="15033"/>
              <exon start="15124" stop="15171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315282" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTGGTATTTTTAACCAGATACATTCCCATTTTTTTCTTACATTCTCCATCTTTTTCTCCCCCTTTCCATTTGTTCAACTTTTTTCAGAACTCTCTTGTTTCTTCATTGGTTCTTAATCAAGATTGATCAAGATTCAATCTTGGTAGAGGGTAACTGAAGAAGAGAGTGAAAGATTCAATTTTTTTTCCATTCTTGATTTAGGTTTTTTTCTGTAATCAAGATTCAATCTTGGAGAGGATTAAAGATTCTATTTTTTTTTCATTCTTGATTTGGGGTTTTTCAGTTATCAAGATTGATAAGATTCAATCTTGGTTGAGGGTAACTGAAGAAGAGGGTTCAAAAACATTTTTTTTCCATTCTTGATTTGGGGTTTTTAGTAACCAAGTAAAAGAAATGGCAATCACTGATGAGAACAAACATCCCTTGATTAAGGAATCTTCTGTTCGAG : TGAAAGATAGGGCTGAAATGGCTACCAGAAAGGTTGTTGGAGTGGAAACAAGAAGCAACCGAAGGGTTTTGGGCGCGATTAATCAGAATCTAGTGGGTGGTCAGGGGTATCCTTGTGTTGTTAACAAGAGAGGATTATCTGA : TGGAAATGGATTCTGTGACAAGAATCTTCCTGTTCATGGTCATCGACCCATCACGAG : GAAATATGCAGCACAAATTGCTAGCTCCCAGAAACACAGCTCAGAG : GAAAACAAGAAACCTAAGATAGCAGCTGAAAGTTTCAGCGTCTGGGAGGATGATATGGAGGCAGCTAATGATAAGCCTGTCCCTATGTCTTTGGAGCAAACAGAAAAAGTGTCAAAGGGCAAGGATCAAATG : ACATACATTCAGGAGGTTGAAATGGAGGATATCTTTGAGGAGGCTGTAATAGATATCGACGGTGATGATGCAAAGAACCATCTTGCAGCTGTTGAATATGTGGGAGATTTGTTTGCTAACTACAGAACAATGGAG : GTTAATAGCTGTGCTTCTCCATACTATATGGCACAACAGGCTGACATCAATGAGAGAATGCGGTCTATCTTGATTGACTGGCTAATTGAG : GTGCATCACAAGTTTGAGCTCAGGGAAGAGACGTTGTTCCTGACCGTCAATTTGATTGACCGGTTCTTGGAGAAGCAAGGCATTGTCAGAAAGAAGCTCCAGCTTGTTGGATTGGTTGCAATGCTACTAGCATGCAAGTATGAGGAGGTTTGTGCTCCACTGGTGGAGGATCTGGTGTTGATTTCGGACAAAGCCTATACAAGGAAGGAGGTTCTTGAAATG : GAAAGCATGATGCTCAACACACTGCAGTTTAATATGTCTGTCCCAACTGCATACGTTTTTATGCGAAGATATCTCAAGGCTGCTCAATGTGACAGGAAG : CTTGAGCTGCTGTCCTTCATGTTGGTTGAGCTTTGCCTTGTGGAGTATGAAATGCTCAAATTTCCACCATCCTTCATAGCTGCTGCAGCAATCTATACAGCTCAGACCACACTCTACGGTGTCCAGCAGTGGAGCAAGACGTGCGAGGTGCACACAACGTACTCAGAAGATCAACTTCT : GGAGTGCTCGAGATCAATTGTTGGCTACCACCAGAAGGCAGCAACAGGGAAACTAACAGGGGTACATAGGAAATACAGCATATCGAAATTTGGGTATGCAGCCAAGTGTGAGCCTGCCCATTTTCTTGTGCAGCAGACACAAGAATAGAGGAGAAGAGGGGCATGTACAGTTATTACTAACTTTATATGCAAATTGGGGATATATTTGTGGGGTGATGGAGAATTTATAGGAAAAGATAACTTAGCAACTAATGGTTGCCCCGGGGGATTTCATTATTTCTTTTTATAGAGTTCATTATTATTGCACTTTTACTATGTTCAACATTTGAACATCCCTGAATTTATTGTTTCAGTTACAGTTTTTCATTTACAAACAGAAATAAAAAGTCACAATTTTCTCAGAGTGGTTTTGCTTTATTGAA : AAATAAAATAATAAAA : AAAAAAAAACA</gDNA_template>
            <first_frame> V  G  I  F  N  Q  I  H  S  H  F  F  L  T  F  S  I  F  F  S  P  F  P  F  V  Q  L  F  S  E  L  S  C  F  F  I  G  S  *  S  R  L  I  K  I  Q  S  W  *  R  V  T  E  E  E  S  E  R  F  N  F  F  S  I  L  D  L  G  F  F  L  *  S  R  F  N  L  G  E  D  *  R  F  Y  F  F  F  I  L  D  L  G  F  F  S  Y  Q  D  *  *  D  S  I  L  V  E  G  N  *  R  R  G  F  K  N  I  F  F  P  F  L  I  W  G  F  *  *  P  S  K  R  N  G  N  H  *  *  E  Q  T  S  L  D  *  G  I  F  C  S  S :   E  R  *  G  *  N  G  Y  Q  K  G  C  W  S  G  N  K  K  Q  P  K  G  F  G  R  D  *  S  E  S  S  G  W  S  G  V  S  L  C  C  *  Q  E  R  I  I  *  :  W  K  W  I  L  *  Q  E  S  S  C  S  W  S  S  T  H  H  E  :  E  I  C  S  T  N  C  *  L  P  E  T  Q  L  R   : G  K  Q  E  T  *  D  S  S  *  K  F  Q  R  L  G  G  *  Y  G  G  S  *  *  *  A  C  P  Y  V  F  G  A  N  R  K  S  V  K  G  Q  G  S  N   : D  I  H  S  G  G  *  N  G  G  Y  L  *  G  G  C  N  R  Y  R  R  *  *  C  K  E  P  S  C  S  C  *  I  C  G  R  F  V  C  *  L  Q  N  N  G   : G  *  *  L  C  F  S  I  L  Y  G  T  T  G  *  H  Q  *  E  N  A  V  Y  L  D  *  L  A  N  *   : G  A  S  Q  V  *  A  Q  G  R  D  V  V  P  D  R  Q  F  D  *  P  V  L  G  E  A  R  H  C  Q  K  E  A  P  A  C  W  I  G  C  N  A  T  S  M  Q  V  *  G  G  L  C  S  T  G  G  G  S  G  V  D  F  G  Q  S  L  Y  K  E  G  G  S  *  N   : G  K  H  D  A  Q  H  T  A  V  *  Y  V  C  P  N  C  I  R  F  Y  A  K  I  S  Q  G  C  S  M  *  Q  E   : A  *  A  A  V  L  H  V  G  *  A  L  P  C  G  V  *  N  A  Q  I  S  T  I  L  H  S  C  C  S  N  L  Y  S  S  D  H  T  L  R  C  P  A  V  E  Q  D  V  R  G  A  H  N  V  L  R  R  S  T  S  :  G  V  L  E  I  N  C  W  L  P  P  E  G  S  N  R  E  T  N  R  G  T  *  E  I  Q  H  I  E  I  W  V  C  S  Q  V  *  A  C  P  F  S  C  A  A  D  T  R  I  E  E  K  R  G  M  Y  S  Y  Y  *  L  Y  M  Q  I  G  D  I  F  V  G  *  W  R  I  Y  R  K  R  *  L  S  N  *  W  L  P  R  G  I  S  L  F  L  F  I  E  F  I  I  I  A  L  L  L  C  S  T  F  E  H  P  *  I  Y  C  F  S  Y  S  F  S  F  T  N  R  N  K  K  S  Q  F  S  Q  S  G  F  A  L  L  K :   N  K  I  I  K  :  K  K  K   </first_frame>
            <second_frame>  L  V  F  L  T  R  Y  I  P  I  F  F  L  H  S  P  S  F  S  P  P  F  H  L  F  N  F  F  Q  N  S  L  V  S  S  L  V  L  N  Q  D  *  S  R  F  N  L  G  R  G  *  L  K  K  R  V  K  D  S  I  F  F  P  F  L  I  *  V  F  F  C  N  Q  D  S  I  L  E  R  I  K  D  S  I  F  F  S  F  L  I  W  G  F  S  V  I  K  I  D  K  I  Q  S  W  L  R  V  T  E  E  E  G  S  K  T  F  F  F  H  S  *  F  G  V  F  S  N  Q  V  K  E  M  A  I  T  D  E  N  K  H  P  L  I  K  E  S  S  V  R   : V  K  D  R  A  E  M  A  T  R  K  V  V  G  V  E  T  R  S  N  R  R  V  L  G  A  I  N  Q  N  L  V  G  G  Q  G  Y  P  C  V  V  N  K  R  G  L  S  D :   G  N  G  F  C  D  K  N  L  P  V  H  G  H  R  P  I  T  R :   K  Y  A  A  Q  I  A  S  S  Q  K  H  S  S  E  :  E  N  K  K  P  K  I  A  A  E  S  F  S  V  W  E  D  D  M  E  A  A  N  D  K  P  V  P  M  S  L  E  Q  T  E  K  V  S  K  G  K  D  Q  M  :  T  Y  I  Q  E  V  E  M  E  D  I  F  E  E  A  V  I  D  I  D  G  D  D  A  K  N  H  L  A  A  V  E  Y  V  G  D  L  F  A  N  Y  R  T  M  E  :  V  N  S  C  A  S  P  Y  Y  M  A  Q  Q  A  D  I  N  E  R  M  R  S  I  L  I  D  W  L  I  E  :  V  H  H  K  F  E  L  R  E  E  T  L  F  L  T  V  N  L  I  D  R  F  L  E  K  Q  G  I  V  R  K  K  L  Q  L  V  G  L  V  A  M  L  L  A  C  K  Y  E  E  V  C  A  P  L  V  E  D  L  V  L  I  S  D  K  A  Y  T  R  K  E  V  L  E  M  :  E  S  M  M  L  N  T  L  Q  F  N  M  S  V  P  T  A  Y  V  F  M  R  R  Y  L  K  A  A  Q  C  D  R  K  :  L  E  L  L  S  F  M  L  V  E  L  C  L  V  E  Y  E  M  L  K  F  P  P  S  F  I  A  A  A  A  I  Y  T  A  Q  T  T  L  Y  G  V  Q  Q  W  S  K  T  C  E  V  H  T  T  Y  S  E  D  Q  L  L :   E  C  S  R  S  I  V  G  Y  H  Q  K  A  A  T  G  K  L  T  G  V  H  R  K  Y  S  I  S  K  F  G  Y  A  A  K  C  E  P  A  H  F  L  V  Q  Q  T  Q  E  *  R  R  R  G  A  C  T  V  I  T  N  F  I  C  K  L  G  I  Y  L  W  G  D  G  E  F  I  G  K  D  N  L  A  T  N  G  C  P  G  G  F  H  Y  F  F  L  *  S  S  L  L  L  H  F  Y  Y  V  Q  H  L  N  I  P  E  F  I  V  S  V  T  V  F  H  L  Q  T  E  I  K  S  H  N  F  L  R  V  V  L  L  Y  *   : K  I  K  *  *  K :   K  K  N  </second_frame>
            <third_frame>   W  Y  F  *  P  D  T  F  P  F  F  S  Y  I  L  H  L  F  L  P  L  S  I  C  S  T  F  F  R  T  L  L  F  L  H  W  F  L  I  K  I  D  Q  D  S  I  L  V  E  G  N  *  R  R  E  *  K  I  Q  F  F  F  H  S  *  F  R  F  F  S  V  I  K  I  Q  S  W  R  G  L  K  I  L  F  F  F  H  S  *  F  G  V  F  Q  L  S  R  L  I  R  F  N  L  G  *  G  *  L  K  K  R  V  Q  K  H  F  F  S  I  L  D  L  G  F  L  V  T  K  *  K  K  W  Q  S  L  M  R  T  N  I  P  *  L  R  N  L  L  F  E  :  *  K  I  G  L  K  W  L  P  E  R  L  L  E  W  K  Q  E  A  T  E  G  F  W  A  R  L  I  R  I  *  W  V  V  R  G  I  L  V  L  L  T  R  E  D  Y  L   : M  E  M  D  S  V  T  R  I  F  L  F  M  V  I  D  P  S  R   : G  N  M  Q  H  K  L  L  A  P  R  N  T  A  Q  R :   K  T  R  N  L  R  *  Q  L  K  V  S  A  S  G  R  M  I  W  R  Q  L  M  I  S  L  S  L  C  L  W  S  K  Q  K  K  C  Q  R  A  R  I  K  * :   H  T  F  R  R  L  K  W  R  I  S  L  R  R  L  *  *  I  S  T  V  M  M  Q  R  T  I  L  Q  L  L  N  M  W  E  I  C  L  L  T  T  E  Q  W  R :   L  I  A  V  L  L  H  T  I  W  H  N  R  L  T  S  M  R  E  C  G  L  S  *  L  T  G  *  L  R :   C  I  T  S  L  S  S  G  K  R  R  C  S  *  P  S  I  *  L  T  G  S  W  R  S  K  A  L  S  E  R  S  S  S  L  L  D  W  L  Q  C  Y  *  H  A  S  M  R  R  F  V  L  H  W  W  R  I  W  C  *  F  R  T  K  P  I  Q  G  R  R  F  L  K  W :   K  A  *  C  S  T  H  C  S  L  I  C  L  S  Q  L  H  T  F  L  C  E  D  I  S  R  L  L  N  V  T  G  S :   L  S  C  C  P  S  C  W  L  S  F  A  L  W  S  M  K  C  S  N  F  H  H  P  S  *  L  L  Q  Q  S  I  Q  L  R  P  H  S  T  V  S  S  S  G  A  R  R  A  R  C  T  Q  R  T  Q  K  I  N  F   : W  S  A  R  D  Q  L  L  A  T  T  R  R  Q  Q  Q  G  N  *  Q  G  Y  I  G  N  T  A  Y  R  N  L  G  M  Q  P  S  V  S  L  P  I  F  L  C  S  R  H  K  N  R  G  E  E  G  H  V  Q  L  L  L  T  L  Y  A  N  W  G  Y  I  C  G  V  M  E  N  L  *  E  K  I  T  *  Q  L  M  V  A  P  G  D  F  I  I  S  F  Y  R  V  H  Y  Y  C  T  F  T  M  F  N  I  *  T  S  L  N  L  L  F  Q  L  Q  F  F  I  Y  K  Q  K  *  K  V  T  I  F  S  E  W  F  C  F  I  E  :  K  *  N  N  K   : K  K  K  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0031D11.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14949" stop="15033"/>
                    <exon start="15124" stop="15265"/>
                    <exon start="15375" stop="15431"/>
                    <exon start="15598" stop="15643"/>
                    <exon start="15756" stop="15887"/>
                    <exon start="15978" stop="16112"/>
                    <exon start="16413" stop="16502"/>
                    <exon start="16583" stop="16804"/>
                    <exon start="16895" stop="16993"/>
                    <exon start="17091" stop="17269"/>
                    <exon start="17347" stop="17494"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1332</number_coding_nucleotides>
                  <number_encoded_amino_acids>444</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FGVFSNQVKEMAITDENKHPLIKESSVRVKDRAEMATRKVVGVETRSNRRVLGAINQNLVGGQGYPCVVNKRGLSDGNGFCDKNLPVHGHRPITRKYAAQIASSQKHSSEENKKPKIAAESFSVWEDDMEAANDKPVPMSLEQTEKVSKGKDQMTYIQEVEMEDIFEEAVIDIDGDDAKNHLAAVEYVGDLFANYRTMEVNSCASPYYMAQQADINERMRSILIDWLIEVHHKFELREETLFLTVNLIDRFLEKQGIVRKKLQLVGLVAMLLACKYEEVCAPLVEDLVLISDKAYTRKEVLEMESMMLNTLQFNMSVPTAYVFMRRYLKAAQCDRKLELLSFMLVELCLVEYEMLKFPPSFIAAAAIYTAQTTLYGVQQWSKTCEVHTTYSEDQLLECSRSIVGYHQKAATGKLTGVHRKYSISKFGYAAKCEPAHFLVQQTQE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="14606" e_stop="15033"/>
            <exon e_start="15124" e_stop="15265"/>
            <exon e_start="15375" e_stop="15431"/>
            <exon e_start="15598" e_stop="15643"/>
            <exon e_start="15756" e_stop="15887"/>
            <exon e_start="15990" e_stop="16112"/>
            <exon e_start="16413" e_stop="16465"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.997" e_score="0.973"/>
          <exon-intron don_prob="0.983" acc_prob="0.975" e_score="0.965"/>
          <exon-intron don_prob="0.969" acc_prob="0.973" e_score="0.978"/>
          <exon-intron don_prob="0.996" acc_prob="0.997" e_score="0.848"/>
          <exon-intron don_prob="0.996" acc_prob="0.996" e_score="0.992"/>
          <exon-only e_score="0.925"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14606" e_stop="15033" e_length="428"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="15034" i_stop="15123" i_length="90"/>
          </intron>
          <exon e_serial="2" e_score="0.973">
            <gDNA_exon_boundary e_start="15124" e_stop="15265" e_length="142"/>
          </exon>
          <intron i_serial="2" don_prob="0.962" acc_prob="0.997">
            <gDNA_intron_boundary i_start="15266" i_stop="15374" i_length="109"/>
          </intron>
          <exon e_serial="3" e_score="0.965">
            <gDNA_exon_boundary e_start="15375" e_stop="15431" e_length="57"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="0.975">
            <gDNA_intron_boundary i_start="15432" i_stop="15597" i_length="166"/>
          </intron>
          <exon e_serial="4" e_score="0.978">
            <gDNA_exon_boundary e_start="15598" e_stop="15643" e_length="46"/>
          </exon>
          <intron i_serial="4" don_prob="0.969" acc_prob="0.973">
            <gDNA_intron_boundary i_start="15644" i_stop="15755" i_length="112"/>
          </intron>
          <exon e_serial="5" e_score="0.848">
            <gDNA_exon_boundary e_start="15756" e_stop="15887" e_length="132"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.997">
            <gDNA_intron_boundary i_start="15888" i_stop="15989" i_length="102"/>
          </intron>
          <exon e_serial="6" e_score="0.992">
            <gDNA_exon_boundary e_start="15990" e_stop="16112" e_length="123"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="0.996">
            <gDNA_intron_boundary i_start="16113" i_stop="16412" i_length="300"/>
          </intron>
          <exon e_serial="7" e_score="0.925">
            <gDNA_exon_boundary e_start="16413" e_stop="16465" e_length="53"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14606" stop="15033"/>
              <exon start="15124" stop="15171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15155" stop="15265"/>
              <exon start="15375" stop="15431"/>
              <exon start="15598" stop="15643"/>
              <exon start="15756" stop="15887"/>
              <exon start="15990" stop="16112"/>
              <exon start="16413" stop="16465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402261" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATTCCCATTTTTTTCTTACATTCTCCATCTTTTTCTCCCCCTTTCCATTTGTTCAACTTTTTTCAGAACTCTCTTGTTTCTTCATTGGTTCTTAATCAAGATTGATCAAGATTCAATCTTGGTAGAGGGTAACTGAAGAAGAGAGTGAAAGATTCAATTTTTTTTCCATTCTTGATTTAGGTTTTTTTCTGTAATCAAGATTCAATCTTGGAGAGGATTAAAGATTCTATTTTTTTTTCATTCTTGATTTGGGGTTTTTCAGTTATCAAGATTGATAAGATTCAATCTTGGTTGAGGGTAACTGAAGAAGAGGGTTCAAAAACATTTTTTTTCCATTCTTGATTTGGGGTTTTTAGTAACCAAGTAAAAGAAATGGCAATCACTGATGAGAACAAACATCCCTTGATTAAGGAATCTTCTGTTCGAG : TGAAAGATAGGGCTGAAATGGCTACCAGAAAGGTTGTTGGAGTGGAAACAAGAAGCAACCGAAGGGTTTTGGGCGCGATTAATCAGAATCTAGTGGGTGGTCAGGGGTATCCTTGTGTTGTTAACAAGAGAGGATTATCTGA : TGGAAATGGATTCTGTGACAAGAATCTTCCTGTTCATGGTCATCGACCCATCACGAG : GAAATATGCAGCACAAATTGCTAGCTCCCAGAAACACAGCTCAGAG : GAAAACAAGAAACCTAAGATAGCAGCTGAAAGTTTCAGCGTCTGGGAGGATGATATGGAGGCAGCTAATGATAAGCCTGTCCCTATGTCTTTGGAGCAAACAGAAAAAGTGTCAAAGGGCAAGGATCAAATG : GAGGTTGAAATGGAGGATATCTTTGAGGAGGCTGTAATAGATATCGACGGTGATGATGCAAAGAACCATCTTGCAGCTGTTGAATATGTGGGAGATTTGTTTGCTAACTACAGAACAATGGAG : GTTAATAGCTGTGCTTCTCCATACTATATGGCACAACAGGCTGACATCAATGA</gDNA_template>
            <first_frame> H  S  H  F  F  L  T  F  S  I  F  F  S  P  F  P  F  V  Q  L  F  S  E  L  S  C  F  F  I  G  S  *  S  R  L  I  K  I  Q  S  W  *  R  V  T  E  E  E  S  E  R  F  N  F  F  S  I  L  D  L  G  F  F  L  *  S  R  F  N  L  G  E  D  *  R  F  Y  F  F  F  I  L  D  L  G  F  F  S  Y  Q  D  *  *  D  S  I  L  V  E  G  N  *  R  R  G  F  K  N  I  F  F  P  F  L  I  W  G  F  *  *  P  S  K  R  N  G  N  H  *  *  E  Q  T  S  L  D  *  G  I  F  C  S  S :   E  R  *  G  *  N  G  Y  Q  K  G  C  W  S  G  N  K  K  Q  P  K  G  F  G  R  D  *  S  E  S  S  G  W  S  G  V  S  L  C  C  *  Q  E  R  I  I  *  :  W  K  W  I  L  *  Q  E  S  S  C  S  W  S  S  T  H  H  E  :  E  I  C  S  T  N  C  *  L  P  E  T  Q  L  R   : G  K  Q  E  T  *  D  S  S  *  K  F  Q  R  L  G  G  *  Y  G  G  S  *  *  *  A  C  P  Y  V  F  G  A  N  R  K  S  V  K  G  Q  G  S  N   : G  G  *  N  G  G  Y  L  *  G  G  C  N  R  Y  R  R  *  *  C  K  E  P  S  C  S  C  *  I  C  G  R  F  V  C  *  L  Q  N  N  G   : G  *  *  L  C  F  S  I  L  Y  G  T  T  G  *  H  Q  * </first_frame>
            <second_frame>  I  P  I  F  F  L  H  S  P  S  F  S  P  P  F  H  L  F  N  F  F  Q  N  S  L  V  S  S  L  V  L  N  Q  D  *  S  R  F  N  L  G  R  G  *  L  K  K  R  V  K  D  S  I  F  F  P  F  L  I  *  V  F  F  C  N  Q  D  S  I  L  E  R  I  K  D  S  I  F  F  S  F  L  I  W  G  F  S  V  I  K  I  D  K  I  Q  S  W  L  R  V  T  E  E  E  G  S  K  T  F  F  F  H  S  *  F  G  V  F  S  N  Q  V  K  E  M  A  I  T  D  E  N  K  H  P  L  I  K  E  S  S  V  R   : V  K  D  R  A  E  M  A  T  R  K  V  V  G  V  E  T  R  S  N  R  R  V  L  G  A  I  N  Q  N  L  V  G  G  Q  G  Y  P  C  V  V  N  K  R  G  L  S  D :   G  N  G  F  C  D  K  N  L  P  V  H  G  H  R  P  I  T  R :   K  Y  A  A  Q  I  A  S  S  Q  K  H  S  S  E  :  E  N  K  K  P  K  I  A  A  E  S  F  S  V  W  E  D  D  M  E  A  A  N  D  K  P  V  P  M  S  L  E  Q  T  E  K  V  S  K  G  K  D  Q  M  :  E  V  E  M  E  D  I  F  E  E  A  V  I  D  I  D  G  D  D  A  K  N  H  L  A  A  V  E  Y  V  G  D  L  F  A  N  Y  R  T  M  E  :  V  N  S  C  A  S  P  Y  Y  M  A  Q  Q  A  D  I  N   </second_frame>
            <third_frame>   F  P  F  F  S  Y  I  L  H  L  F  L  P  L  S  I  C  S  T  F  F  R  T  L  L  F  L  H  W  F  L  I  K  I  D  Q  D  S  I  L  V  E  G  N  *  R  R  E  *  K  I  Q  F  F  F  H  S  *  F  R  F  F  S  V  I  K  I  Q  S  W  R  G  L  K  I  L  F  F  F  H  S  *  F  G  V  F  Q  L  S  R  L  I  R  F  N  L  G  *  G  *  L  K  K  R  V  Q  K  H  F  F  S  I  L  D  L  G  F  L  V  T  K  *  K  K  W  Q  S  L  M  R  T  N  I  P  *  L  R  N  L  L  F  E  :  *  K  I  G  L  K  W  L  P  E  R  L  L  E  W  K  Q  E  A  T  E  G  F  W  A  R  L  I  R  I  *  W  V  V  R  G  I  L  V  L  L  T  R  E  D  Y  L   : M  E  M  D  S  V  T  R  I  F  L  F  M  V  I  D  P  S  R   : G  N  M  Q  H  K  L  L  A  P  R  N  T  A  Q  R :   K  T  R  N  L  R  *  Q  L  K  V  S  A  S  G  R  M  I  W  R  Q  L  M  I  S  L  S  L  C  L  W  S  K  Q  K  K  C  Q  R  A  R  I  K  W :   R  L  K  W  R  I  S  L  R  R  L  *  *  I  S  T  V  M  M  Q  R  T  I  L  Q  L  L  N  M  W  E  I  C  L  L  T  T  E  Q  W  R :   L  I  A  V  L  L  H  T  I  W  H  N  R  L  T  S  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0031D11.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14949" stop="15033"/>
                    <exon start="15124" stop="15265"/>
                    <exon start="15375" stop="15431"/>
                    <exon start="15598" stop="15643"/>
                    <exon start="15756" stop="15887"/>
                    <exon start="15990" stop="16112"/>
                    <exon start="16413" stop="16463"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>636</number_coding_nucleotides>
                  <number_encoded_amino_acids>212</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FGVFSNQVKEMAITDENKHPLIKESSVRVKDRAEMATRKVVGVETRSNRRVLGAINQNLVGGQGYPCVVNKRGLSDGNGFCDKNLPVHGHRPITRKYAAQIASSQKHSSEENKKPKIAAESFSVWEDDMEAANDKPVPMSLEQTEKVSKGKDQMEVEMEDIFEEAVIDIDGDDAKNHLAAVEYVGDLFANYRTMEVNSCASPYYMAQQADIN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="15755" e_stop="16475"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="15755" e_stop="16475" e_length="721"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15755" stop="16475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554398" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAAAACAAGAAACCTAAGATAGCAGCTGAAAGTTTCAGCGTCTGGGAGGATGATATGGAGGCAGCTAATGATAAGCCTGTCCCTATGTCTTTGGAGCAAACAGAAAAAGTGTCAAAGGGCAAGGATCAAATGGTAACAAAAACAATCCTGTCTTTAAACTTTCATTAATTAATACTAGTATATTAATGTATATGTTTTTAATTAATGAGCTGATCATTAAAGACATACATTCAGGAGGTTGAAATGGAGGATATCTTTGAGGAGGCTGTAATAGATATCGACGGTGATGATGCAAAGAACCATCTTGCAGCTGTTGAATATGTGGGAGATTTGTTTGCTAACTACAGAACAATGGAGGTTAGTTTAGCTCAGTAACTTACTAGTTAACAGTTGCATAGATCCTTAATTCGTAAGATTAACTGCTTAATTAAATCTTTATAGCTTTGTCTGATGTGATACATTTGAATCTCCACTGACTTTTAAAATCATTAGTTAGATCCTGACATATTACACCTTTTTACATTGTTTATACAACTTTACTTGGATAGATCCTATAGTTGTTTTTATTTATTTCAAATCGTAGCATCTATATTTATGAGTTGAATTTCATCATTGTATGTGTTTGGGAATGATTAAATCATTGTCCATTATATTCAGGTTAATAGCTGTGCTTCTCCATACTATATGGCACAACAGGCTGACATCAATGAGAGAATGCGG</gDNA_template>
            <first_frame> G  K  Q  E  T  *  D  S  S  *  K  F  Q  R  L  G  G  *  Y  G  G  S  *  *  *  A  C  P  Y  V  F  G  A  N  R  K  S  V  K  G  Q  G  S  N  G  N  K  N  N  P  V  F  K  L  S  L  I  N  T  S  I  L  M  Y  M  F  L  I  N  E  L  I  I  K  D  I  H  S  G  G  *  N  G  G  Y  L  *  G  G  C  N  R  Y  R  R  *  *  C  K  E  P  S  C  S  C  *  I  C  G  R  F  V  C  *  L  Q  N  N  G  G  *  F  S  S  V  T  Y  *  L  T  V  A  *  I  L  N  S  *  D  *  L  L  N  *  I  F  I  A  L  S  D  V  I  H  L  N  L  H  *  L  L  K  S  L  V  R  S  *  H  I  T  P  F  Y  I  V  Y  T  T  L  L  G  *  I  L  *  L  F  L  F  I  S  N  R  S  I  Y  I  Y  E  L  N  F  I  I  V  C  V  W  E  *  L  N  H  C  P  L  Y  S  G  *  *  L  C  F  S  I  L  Y  G  T  T  G  *  H  Q  *  E  N  A  </first_frame>
            <second_frame>  E  N  K  K  P  K  I  A  A  E  S  F  S  V  W  E  D  D  M  E  A  A  N  D  K  P  V  P  M  S  L  E  Q  T  E  K  V  S  K  G  K  D  Q  M  V  T  K  T  I  L  S  L  N  F  H  *  L  I  L  V  Y  *  C  I  C  F  *  L  M  S  *  S  L  K  T  Y  I  Q  E  V  E  M  E  D  I  F  E  E  A  V  I  D  I  D  G  D  D  A  K  N  H  L  A  A  V  E  Y  V  G  D  L  F  A  N  Y  R  T  M  E  V  S  L  A  Q  *  L  T  S  *  Q  L  H  R  S  L  I  R  K  I  N  C  L  I  K  S  L  *  L  C  L  M  *  Y  I  *  I  S  T  D  F  *  N  H  *  L  D  P  D  I  L  H  L  F  T  L  F  I  Q  L  Y  L  D  R  S  Y  S  C  F  Y  L  F  Q  I  V  A  S  I  F  M  S  *  I  S  S  L  Y  V  F  G  N  D  *  I  I  V  H  Y  I  Q  V  N  S  C  A  S  P  Y  Y  M  A  Q  Q  A  D  I  N  E  R  M  R </second_frame>
            <third_frame>   K  T  R  N  L  R  *  Q  L  K  V  S  A  S  G  R  M  I  W  R  Q  L  M  I  S  L  S  L  C  L  W  S  K  Q  K  K  C  Q  R  A  R  I  K  W  *  Q  K  Q  S  C  L  *  T  F  I  N  *  Y  *  Y  I  N  V  Y  V  F  N  *  *  A  D  H  *  R  H  T  F  R  R  L  K  W  R  I  S  L  R  R  L  *  *  I  S  T  V  M  M  Q  R  T  I  L  Q  L  L  N  M  W  E  I  C  L  L  T  T  E  Q  W  R  L  V  *  L  S  N  L  L  V  N  S  C  I  D  P  *  F  V  R  L  T  A  *  L  N  L  Y  S  F  V  *  C  D  T  F  E  S  P  L  T  F  K  I  I  S  *  I  L  T  Y  Y  T  F  L  H  C  L  Y  N  F  T  W  I  D  P  I  V  V  F  I  Y  F  K  S  *  H  L  Y  L  *  V  E  F  H  H  C  M  C  L  G  M  I  K  S  L  S  I  I  F  R  L  I  A  V  L  L  H  T  I  W  H  N  R  L  T  S  M  R  E  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLe0031D11.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="22130" PGL_stop="23928"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22130" e_stop="23786"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="22130" e_stop="23786" e_length="1657"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22130" stop="22597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301303" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22139" stop="22962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22139" stop="22866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22139" stop="22857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22140" stop="22968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22140" stop="22597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22144" stop="22853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E603822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22146" stop="22810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22148" stop="22851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485325" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22148" stop="22845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485324" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22148" stop="22673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22151" stop="22947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731620" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22151" stop="22613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281019" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22152" stop="23011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22159" stop="22691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22160" stop="22620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443733" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22179" stop="22602"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22269" stop="22940"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22295" stop="23003"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22296" stop="22864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22302" stop="22783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366459" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22321" stop="22913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22328" stop="23014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22328" stop="22801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22331" stop="22715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22335" stop="22980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453241" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22399" stop="22991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22457" stop="23076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449450" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22635" stop="23162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22721" stop="23263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22973" stop="23424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E565627" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22979" stop="23727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376557" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23058" stop="23786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23110" stop="23508"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607424" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCGCCCAACCTTCTCTACACACAGTTTCTAAAGGGAAGAAAAAGGCAAACAAACAATCTGCGGCCATGGCTATGTCAGCTGCCACCACCCAATCGTTCCTCCTTAACAACAAAACCACCCGCCATAACTACCAAACCCTCAAATCCGCCACCCATATCGCCACCTTCCCCTCCACCACCACCCTAACCTCTACATACAAATCTATGTCTATTTCCTGCTCAGCCGCCGCCTCCACAACTACCACTCCCCTCCAAACACCCCCTACCACCTCATCAGATCGGGTCTTCAACTTCGCTGCCGGACCCGCCACGCTCCCGGAAAATGTCCTACAAAAAGCCCAAGCCGACCTCGTTAACTGGCGGGGCTCCGGCATGTCCGTTATGGAAATGAGCCACCGTGGAAAAGAATTCCTTTCCATTATTCAAAAAGCAGAATCAGATCTGAGAACCCTTCTTAATATCTCTGATGAATACGCCGTTCTTTTCCTTCAAGGTGGGGCCACCACCCAATTCGCCGCCATTCCTCTCAACATCTGCTCACCGGACGACGCCGTTGATTACATCGTCACCGGTTCATGGGGTGATAAGGCTTTCAAAGAAGCAGCTAAATACAGCAAACCGAATGTCATTTGGAGTGGTAAATCGGAAAAATACACCAAGATCCCGAATTTTGATTCGTTGGTACAAAACCCAGATGCCAAGTATTTGCATATATGCGCCAATGAAACTATTCATGGGGTTGAATTCAAAGATTACCCAACACCCCTTAACGAGAAAACCATTCTTGTTGCTGATATGTCCTCGAATTTCTGTTCAAAACCAGTAGATGTTTCTAAATTTGGTATCATTTACGCTGGTGCACAGAAAAATGTTGGTCCATCTGGAGTTACCATTGTGATTATAAGGAAAGATTTGATTGGAAATGCACAGGAAAGTACACCTGTGATGTTGGATTACAAGATCCATGCTGAGAACAATTCGTTGTATAACACACCCCCTTGTTATGGTATTTACATGTGCGGGCTTGTGTTTGAAGATCTGTTGGATCAAGGTGGATTAGTAGAGGTTGAGAAGAAGAATCAGAAGAAAGCTCAGATTTTGTATGATGCTATTGATTCTAGCAATGGATTTTACAGGTGCCCAGTTGATAAATCAGTGAGGTCTTTGATGAATGTGCCATTTACATTGGCTAAACCAGAATTGGAAGCTGAATTTGTGAAGACAGCTGCTGGTGAGAAGATGGTGCAGCTTAAGGGACATAGGTCTGTTGGTGGAATGAGGGCTTCAATATACAATGCTATGCCTTTGGCTGGAGTTGAAAAGTTGGTAGCTTTCATGAAGGAGTTCCAAGCTAAGCATGGTTAAAACTATATTGTTCTATTTTAATATTTGCAACCCTTTATAATTTTCTGTTTTTTTGTGCCTTTATGTTCTGTTGGTTTATTTGAGTTGAGAGAGAGAGTCTGAATGACAACACTTGAGTATGTGTTAGTCCTATTGATTCTTGTGTACTTCTAGGAAGTTTTTGTTTTTAGAAATATGGAAACTATTACTTAGTCCTATTAGAAGTTTAATGAAGAAGTATTTTCAATTTGTTTTTTTTGGTTTCATTGTTGAGCAGCACTCGCTCCATTTTATGAGGAATATGGTTGAATAA</gDNA_template>
            <first_frame> I  A  Q  P  S  L  H  T  V  S  K  G  K  K  K  A  N  K  Q  S  A  A  M  A  M  S  A  A  T  T  Q  S  F  L  L  N  N  K  T  T  R  H  N  Y  Q  T  L  K  S  A  T  H  I  A  T  F  P  S  T  T  T  L  T  S  T  Y  K  S  M  S  I  S  C  S  A  A  A  S  T  T  T  T  P  L  Q  T  P  P  T  T  S  S  D  R  V  F  N  F  A  A  G  P  A  T  L  P  E  N  V  L  Q  K  A  Q  A  D  L  V  N  W  R  G  S  G  M  S  V  M  E  M  S  H  R  G  K  E  F  L  S  I  I  Q  K  A  E  S  D  L  R  T  L  L  N  I  S  D  E  Y  A  V  L  F  L  Q  G  G  A  T  T  Q  F  A  A  I  P  L  N  I  C  S  P  D  D  A  V  D  Y  I  V  T  G  S  W  G  D  K  A  F  K  E  A  A  K  Y  S  K  P  N  V  I  W  S  G  K  S  E  K  Y  T  K  I  P  N  F  D  S  L  V  Q  N  P  D  A  K  Y  L  H  I  C  A  N  E  T  I  H  G  V  E  F  K  D  Y  P  T  P  L  N  E  K  T  I  L  V  A  D  M  S  S  N  F  C  S  K  P  V  D  V  S  K  F  G  I  I  Y  A  G  A  Q  K  N  V  G  P  S  G  V  T  I  V  I  I  R  K  D  L  I  G  N  A  Q  E  S  T  P  V  M  L  D  Y  K  I  H  A  E  N  N  S  L  Y  N  T  P  P  C  Y  G  I  Y  M  C  G  L  V  F  E  D  L  L  D  Q  G  G  L  V  E  V  E  K  K  N  Q  K  K  A  Q  I  L  Y  D  A  I  D  S  S  N  G  F  Y  R  C  P  V  D  K  S  V  R  S  L  M  N  V  P  F  T  L  A  K  P  E  L  E  A  E  F  V  K  T  A  A  G  E  K  M  V  Q  L  K  G  H  R  S  V  G  G  M  R  A  S  I  Y  N  A  M  P  L  A  G  V  E  K  L  V  A  F  M  K  E  F  Q  A  K  H  G  *  N  Y  I  V  L  F  *  Y  L  Q  P  F  I  I  F  C  F  F  V  P  L  C  S  V  G  L  F  E  L  R  E  R  V  *  M  T  T  L  E  Y  V  L  V  L  L  I  L  V  Y  F  *  E  V  F  V  F  R  N  M  E  T  I  T  *  S  Y  *  K  F  N  E  E  V  F  S  I  C  F  F  W  F  H  C  *  A  A  L  A  P  F  Y  E  E  Y  G  *  I  </first_frame>
            <second_frame>  S  P  N  L  L  Y  T  Q  F  L  K  G  R  K  R  Q  T  N  N  L  R  P  W  L  C  Q  L  P  P  P  N  R  S  S  L  T  T  K  P  P  A  I  T  T  K  P  S  N  P  P  P  I  S  P  P  S  P  P  P  P  P  *  P  L  H  T  N  L  C  L  F  P  A  Q  P  P  P  P  Q  L  P  L  P  S  K  H  P  L  P  P  H  Q  I  G  S  S  T  S  L  P  D  P  P  R  S  R  K  M  S  Y  K  K  P  K  P  T  S  L  T  G  G  A  P  A  C  P  L  W  K  *  A  T  V  E  K  N  S  F  P  L  F  K  K  Q  N  Q  I  *  E  P  F  L  I  S  L  M  N  T  P  F  F  S  F  K  V  G  P  P  P  N  S  P  P  F  L  S  T  S  A  H  R  T  T  P  L  I  T  S  S  P  V  H  G  V  I  R  L  S  K  K  Q  L  N  T  A  N  R  M  S  F  G  V  V  N  R  K  N  T  P  R  S  R  I  L  I  R  W  Y  K  T  Q  M  P  S  I  C  I  Y  A  P  M  K  L  F  M  G  L  N  S  K  I  T  Q  H  P  L  T  R  K  P  F  L  L  L  I  C  P  R  I  S  V  Q  N  Q  *  M  F  L  N  L  V  S  F  T  L  V  H  R  K  M  L  V  H  L  E  L  P  L  *  L  *  G  K  I  *  L  E  M  H  R  K  V  H  L  *  C  W  I  T  R  S  M  L  R  T  I  R  C  I  T  H  P  L  V  M  V  F  T  C  A  G  L  C  L  K  I  C  W  I  K  V  D  *  *  R  L  R  R  R  I  R  R  K  L  R  F  C  M  M  L  L  I  L  A  M  D  F  T  G  A  Q  L  I  N  Q  *  G  L  *  *  M  C  H  L  H  W  L  N  Q  N  W  K  L  N  L  *  R  Q  L  L  V  R  R  W  C  S  L  R  D  I  G  L  L  V  E  *  G  L  Q  Y  T  M  L  C  L  W  L  E  L  K  S  W  *  L  S  *  R  S  S  K  L  S  M  V  K  T  I  L  F  Y  F  N  I  C  N  P  L  *  F  S  V  F  L  C  L  Y  V  L  L  V  Y  L  S  *  E  R  E  S  E  *  Q  H  L  S  M  C  *  S  Y  *  F  L  C  T  S  R  K  F  L  F  L  E  I  W  K  L  L  L  S  P  I  R  S  L  M  K  K  Y  F  Q  F  V  F  F  G  F  I  V  E  Q  H  S  L  H  F  M  R  N  M  V  E  * </second_frame>
            <third_frame>   R  P  T  F  S  T  H  S  F  *  R  E  E  K  G  K  Q  T  I  C  G  H  G  Y  V  S  C  H  H  P  I  V  P  P  *  Q  Q  N  H  P  P  *  L  P  N  P  Q  I  R  H  P  Y  R  H  L  P  L  H  H  H  P  N  L  Y  I  Q  I  Y  V  Y  F  L  L  S  R  R  L  H  N  Y  H  S  P  P  N  T  P  Y  H  L  I  R  S  G  L  Q  L  R  C  R  T  R  H  A  P  G  K  C  P  T  K  S  P  S  R  P  R  *  L  A  G  L  R  H  V  R  Y  G  N  E  P  P  W  K  R  I  P  F  H  Y  S  K  S  R  I  R  S  E  N  P  S  *  Y  L  *  *  I  R  R  S  F  P  S  R  W  G  H  H  P  I  R  R  H  S  S  Q  H  L  L  T  G  R  R  R  *  L  H  R  H  R  F  M  G  *  *  G  F  Q  R  S  S  *  I  Q  Q  T  E  C  H  L  E  W  *  I  G  K  I  H  Q  D  P  E  F  *  F  V  G  T  K  P  R  C  Q  V  F  A  Y  M  R  Q  *  N  Y  S  W  G  *  I  Q  R  L  P  N  T  P  *  R  E  N  H  S  C  C  *  Y  V  L  E  F  L  F  K  T  S  R  C  F  *  I  W  Y  H  L  R  W  C  T  E  K  C  W  S  I  W  S  Y  H  C  D  Y  K  E  R  F  D  W  K  C  T  G  K  Y  T  C  D  V  G  L  Q  D  P  C  *  E  Q  F  V  V  *  H  T  P  L  L  W  Y  L  H  V  R  A  C  V  *  R  S  V  G  S  R  W  I  S  R  G  *  E  E  E  S  E  E  S  S  D  F  V  *  C  Y  *  F  *  Q  W  I  L  Q  V  P  S  *  *  I  S  E  V  F  D  E  C  A  I  Y  I  G  *  T  R  I  G  S  *  I  C  E  D  S  C  W  *  E  D  G  A  A  *  G  T  *  V  C  W  W  N  E  G  F  N  I  Q  C  Y  A  F  G  W  S  *  K  V  G  S  F  H  E  G  V  P  S  *  A  W  L  K  L  Y  C  S  I  L  I  F  A  T  L  Y  N  F  L  F  F  C  A  F  M  F  C  W  F  I  *  V  E  R  E  S  L  N  D  N  T  *  V  C  V  S  P  I  D  S  C  V  L  L  G  S  F  C  F  *  K  Y  G  N  Y  Y  L  V  L  L  E  V  *  *  R  S  I  F  N  L  F  F  L  V  S  L  L  S  S  T  R  S  I  L  *  G  I  W  L  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0031D11.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22130" stop="23494"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1362</number_coding_nucleotides>
                  <number_encoded_amino_acids>454</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IAQPSLHTVSKGKKKANKQSAAMAMSAATTQSFLLNNKTTRHNYQTLKSATHIATFPSTTTLTSTYKSMSISCSAAASTTTTPLQTPPTTSSDRVFNFAAGPATLPENVLQKAQADLVNWRGSGMSVMEMSHRGKEFLSIIQKAESDLRTLLNISDEYAVLFLQGGATTQFAAIPLNICSPDDAVDYIVTGSWGDKAFKEAAKYSKPNVIWSGKSEKYTKIPNFDSLVQNPDAKYLHICANETIHGVEFKDYPTPLNEKTILVADMSSNFCSKPVDVSKFGIIYAGAQKNVGPSGVTIVIIRKDLIGNAQESTPVMLDYKIHAENNSLYNTPPCYGIYMCGLVFEDLLDQGGLVEVEKKNQKKAQILYDAIDSSNGFYRCPVDKSVRSLMNVPFTLAKPELEAEFVKTAAGEKMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKEFQAKHG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="22130" e_stop="23723"/>
            <exon e_start="23913" e_stop="23928"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.854" e_score="0.995"/>
          <exon-only e_score="0.500"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="22130" e_stop="23723" e_length="1594"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.854">
            <gDNA_intron_boundary i_start="23724" i_stop="23912" i_length="189"/>
          </intron>
          <exon e_serial="2" e_score="0.500">
            <gDNA_exon_boundary e_start="23913" e_stop="23928" e_length="16"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22130" stop="22597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301303" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22139" stop="22962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22139" stop="22866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22139" stop="22857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22140" stop="22968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22140" stop="22597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22144" stop="22853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E603822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22146" stop="22810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22148" stop="22851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485325" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22148" stop="22845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485324" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22148" stop="22673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22151" stop="22947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731620" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22151" stop="22613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281019" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22152" stop="23011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22159" stop="22691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22160" stop="22620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443733" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22179" stop="22602"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22269" stop="22940"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22295" stop="23003"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22296" stop="22864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22302" stop="22783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366459" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22321" stop="22913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22328" stop="23014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22328" stop="22801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22331" stop="22715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22335" stop="22980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453241" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22399" stop="22991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22457" stop="23076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449450" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22635" stop="23162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22721" stop="23263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22973" stop="23424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E565627" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23110" stop="23508"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607424" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23233" stop="23723"/>
              <exon start="23913" stop="23928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713294" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCGCCCAACCTTCTCTACACACAGTTTCTAAAGGGAAGAAAAAGGCAAACAAACAATCTGCGGCCATGGCTATGTCAGCTGCCACCACCCAATCGTTCCTCCTTAACAACAAAACCACCCGCCATAACTACCAAACCCTCAAATCCGCCACCCATATCGCCACCTTCCCCTCCACCACCACCCTAACCTCTACATACAAATCTATGTCTATTTCCTGCTCAGCCGCCGCCTCCACAACTACCACTCCCCTCCAAACACCCCCTACCACCTCATCAGATCGGGTCTTCAACTTCGCTGCCGGACCCGCCACGCTCCCGGAAAATGTCCTACAAAAAGCCCAAGCCGACCTCGTTAACTGGCGGGGCTCCGGCATGTCCGTTATGGAAATGAGCCACCGTGGAAAAGAATTCCTTTCCATTATTCAAAAAGCAGAATCAGATCTGAGAACCCTTCTTAATATCTCTGATGAATACGCCGTTCTTTTCCTTCAAGGTGGGGCCACCACCCAATTCGCCGCCATTCCTCTCAACATCTGCTCACCGGACGACGCCGTTGATTACATCGTCACCGGTTCATGGGGTGATAAGGCTTTCAAAGAAGCAGCTAAATACAGCAAACCGAATGTCATTTGGAGTGGTAAATCGGAAAAATACACCAAGATCCCGAATTTTGATTCGTTGGTACAAAACCCAGATGCCAAGTATTTGCATATATGCGCCAATGAAACTATTCATGGGGTTGAATTCAAAGATTACCCAACACCCCTTAACGAGAAAACCATTCTTGTTGCTGATATGTCCTCGAATTTCTGTTCAAAACCAGTAGATGTTTCTAAATTTGGTATCATTTACGCTGGTGCACAGAAAAATGTTGGTCCATCTGGAGTTACCATTGTGATTATAAGGAAAGATTTGATTGGAAATGCACAGGAAAGTACACCTGTGATGTTGGATTACAAGATCCATGCTGAGAACAATTCGTTGTATAACACACCCCCTTGTTATGGTATTTACATGTGCGGGCTTGTGTTTGAAGATCTGTTGGATCAAGGTGGATTAGTAGAGGTTGAGAAGAAGAATCAGAAGAAAGCTCAGATTTTGTATGATGCTATTGATTCTAGCAATGGATTTTACAGGTGCCCAGTTGATAAATCAGTGAGGTCTTTGATGAATGTGCCATTTACATTGGCTAAACCAGAATTGGAAGCTGAATTTGTGAAGACAGCTGCTGGTGAGAAGATGGTGCAGCTTAAGGGACATAGGTCTGTTGGTGGAATGAGGGCTTCAATATACAATGCTATGCCTTTGGCTGGAGTTGAAAAGTTGGTAGCTTTCATGAAGGAGTTCCAAGCTAAGCATGGTTAAAACTATATTGTTCTATTTTAATATTTGCAACCCTTTATAATTTTCTGTTTTTTTGTGCCTTTATGTTCTGTTGGTTTATTTGAGTTGAGAGAGAGAGTCTGAATGACAACACTTGAGTATGTGTTAGTCCTATTGATTCTTGTGTACTTCTAGGAAGTTTTTGTTTTTAGAAATATGGAAACTATTACTTAGTCCTATTAGAAGTTTAATGAAGAAGTATTTTCAATTT : GGCGTATAAAGAGAAA</gDNA_template>
            <first_frame> I  A  Q  P  S  L  H  T  V  S  K  G  K  K  K  A  N  K  Q  S  A  A  M  A  M  S  A  A  T  T  Q  S  F  L  L  N  N  K  T  T  R  H  N  Y  Q  T  L  K  S  A  T  H  I  A  T  F  P  S  T  T  T  L  T  S  T  Y  K  S  M  S  I  S  C  S  A  A  A  S  T  T  T  T  P  L  Q  T  P  P  T  T  S  S  D  R  V  F  N  F  A  A  G  P  A  T  L  P  E  N  V  L  Q  K  A  Q  A  D  L  V  N  W  R  G  S  G  M  S  V  M  E  M  S  H  R  G  K  E  F  L  S  I  I  Q  K  A  E  S  D  L  R  T  L  L  N  I  S  D  E  Y  A  V  L  F  L  Q  G  G  A  T  T  Q  F  A  A  I  P  L  N  I  C  S  P  D  D  A  V  D  Y  I  V  T  G  S  W  G  D  K  A  F  K  E  A  A  K  Y  S  K  P  N  V  I  W  S  G  K  S  E  K  Y  T  K  I  P  N  F  D  S  L  V  Q  N  P  D  A  K  Y  L  H  I  C  A  N  E  T  I  H  G  V  E  F  K  D  Y  P  T  P  L  N  E  K  T  I  L  V  A  D  M  S  S  N  F  C  S  K  P  V  D  V  S  K  F  G  I  I  Y  A  G  A  Q  K  N  V  G  P  S  G  V  T  I  V  I  I  R  K  D  L  I  G  N  A  Q  E  S  T  P  V  M  L  D  Y  K  I  H  A  E  N  N  S  L  Y  N  T  P  P  C  Y  G  I  Y  M  C  G  L  V  F  E  D  L  L  D  Q  G  G  L  V  E  V  E  K  K  N  Q  K  K  A  Q  I  L  Y  D  A  I  D  S  S  N  G  F  Y  R  C  P  V  D  K  S  V  R  S  L  M  N  V  P  F  T  L  A  K  P  E  L  E  A  E  F  V  K  T  A  A  G  E  K  M  V  Q  L  K  G  H  R  S  V  G  G  M  R  A  S  I  Y  N  A  M  P  L  A  G  V  E  K  L  V  A  F  M  K  E  F  Q  A  K  H  G  *  N  Y  I  V  L  F  *  Y  L  Q  P  F  I  I  F  C  F  F  V  P  L  C  S  V  G  L  F  E  L  R  E  R  V  *  M  T  T  L  E  Y  V  L  V  L  L  I  L  V  Y  F  *  E  V  F  V  F  R  N  M  E  T  I  T  *  S  Y  *  K  F  N  E  E  V  F  S  I   : W  R  I  K  R   </first_frame>
            <second_frame>  S  P  N  L  L  Y  T  Q  F  L  K  G  R  K  R  Q  T  N  N  L  R  P  W  L  C  Q  L  P  P  P  N  R  S  S  L  T  T  K  P  P  A  I  T  T  K  P  S  N  P  P  P  I  S  P  P  S  P  P  P  P  P  *  P  L  H  T  N  L  C  L  F  P  A  Q  P  P  P  P  Q  L  P  L  P  S  K  H  P  L  P  P  H  Q  I  G  S  S  T  S  L  P  D  P  P  R  S  R  K  M  S  Y  K  K  P  K  P  T  S  L  T  G  G  A  P  A  C  P  L  W  K  *  A  T  V  E  K  N  S  F  P  L  F  K  K  Q  N  Q  I  *  E  P  F  L  I  S  L  M  N  T  P  F  F  S  F  K  V  G  P  P  P  N  S  P  P  F  L  S  T  S  A  H  R  T  T  P  L  I  T  S  S  P  V  H  G  V  I  R  L  S  K  K  Q  L  N  T  A  N  R  M  S  F  G  V  V  N  R  K  N  T  P  R  S  R  I  L  I  R  W  Y  K  T  Q  M  P  S  I  C  I  Y  A  P  M  K  L  F  M  G  L  N  S  K  I  T  Q  H  P  L  T  R  K  P  F  L  L  L  I  C  P  R  I  S  V  Q  N  Q  *  M  F  L  N  L  V  S  F  T  L  V  H  R  K  M  L  V  H  L  E  L  P  L  *  L  *  G  K  I  *  L  E  M  H  R  K  V  H  L  *  C  W  I  T  R  S  M  L  R  T  I  R  C  I  T  H  P  L  V  M  V  F  T  C  A  G  L  C  L  K  I  C  W  I  K  V  D  *  *  R  L  R  R  R  I  R  R  K  L  R  F  C  M  M  L  L  I  L  A  M  D  F  T  G  A  Q  L  I  N  Q  *  G  L  *  *  M  C  H  L  H  W  L  N  Q  N  W  K  L  N  L  *  R  Q  L  L  V  R  R  W  C  S  L  R  D  I  G  L  L  V  E  *  G  L  Q  Y  T  M  L  C  L  W  L  E  L  K  S  W  *  L  S  *  R  S  S  K  L  S  M  V  K  T  I  L  F  Y  F  N  I  C  N  P  L  *  F  S  V  F  L  C  L  Y  V  L  L  V  Y  L  S  *  E  R  E  S  E  *  Q  H  L  S  M  C  *  S  Y  *  F  L  C  T  S  R  K  F  L  F  L  E  I  W  K  L  L  L  S  P  I  R  S  L  M  K  K  Y  F  Q  F  :  G  V  *  R  E  </second_frame>
            <third_frame>   R  P  T  F  S  T  H  S  F  *  R  E  E  K  G  K  Q  T  I  C  G  H  G  Y  V  S  C  H  H  P  I  V  P  P  *  Q  Q  N  H  P  P  *  L  P  N  P  Q  I  R  H  P  Y  R  H  L  P  L  H  H  H  P  N  L  Y  I  Q  I  Y  V  Y  F  L  L  S  R  R  L  H  N  Y  H  S  P  P  N  T  P  Y  H  L  I  R  S  G  L  Q  L  R  C  R  T  R  H  A  P  G  K  C  P  T  K  S  P  S  R  P  R  *  L  A  G  L  R  H  V  R  Y  G  N  E  P  P  W  K  R  I  P  F  H  Y  S  K  S  R  I  R  S  E  N  P  S  *  Y  L  *  *  I  R  R  S  F  P  S  R  W  G  H  H  P  I  R  R  H  S  S  Q  H  L  L  T  G  R  R  R  *  L  H  R  H  R  F  M  G  *  *  G  F  Q  R  S  S  *  I  Q  Q  T  E  C  H  L  E  W  *  I  G  K  I  H  Q  D  P  E  F  *  F  V  G  T  K  P  R  C  Q  V  F  A  Y  M  R  Q  *  N  Y  S  W  G  *  I  Q  R  L  P  N  T  P  *  R  E  N  H  S  C  C  *  Y  V  L  E  F  L  F  K  T  S  R  C  F  *  I  W  Y  H  L  R  W  C  T  E  K  C  W  S  I  W  S  Y  H  C  D  Y  K  E  R  F  D  W  K  C  T  G  K  Y  T  C  D  V  G  L  Q  D  P  C  *  E  Q  F  V  V  *  H  T  P  L  L  W  Y  L  H  V  R  A  C  V  *  R  S  V  G  S  R  W  I  S  R  G  *  E  E  E  S  E  E  S  S  D  F  V  *  C  Y  *  F  *  Q  W  I  L  Q  V  P  S  *  *  I  S  E  V  F  D  E  C  A  I  Y  I  G  *  T  R  I  G  S  *  I  C  E  D  S  C  W  *  E  D  G  A  A  *  G  T  *  V  C  W  W  N  E  G  F  N  I  Q  C  Y  A  F  G  W  S  *  K  V  G  S  F  H  E  G  V  P  S  *  A  W  L  K  L  Y  C  S  I  L  I  F  A  T  L  Y  N  F  L  F  F  C  A  F  M  F  C  W  F  I  *  V  E  R  E  S  L  N  D  N  T  *  V  C  V  S  P  I  D  S  C  V  L  L  G  S  F  C  F  *  K  Y  G  N  Y  Y  L  V  L  L  E  V  *  *  R  S  I  F  N  L :   A  Y  K  E  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0031D11.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22130" stop="23494"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1362</number_coding_nucleotides>
                  <number_encoded_amino_acids>454</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IAQPSLHTVSKGKKKANKQSAAMAMSAATTQSFLLNNKTTRHNYQTLKSATHIATFPSTTTLTSTYKSMSISCSAAASTTTTPLQTPPTTSSDRVFNFAAGPATLPENVLQKAQADLVNWRGSGMSVMEMSHRGKEFLSIIQKAESDLRTLLNISDEYAVLFLQGGATTQFAAIPLNICSPDDAVDYIVTGSWGDKAFKEAAKYSKPNVIWSGKSEKYTKIPNFDSLVQNPDAKYLHICANETIHGVEFKDYPTPLNEKTILVADMSSNFCSKPVDVSKFGIIYAGAQKNVGPSGVTIVIIRKDLIGNAQESTPVMLDYKIHAENNSLYNTPPCYGIYMCGLVFEDLLDQGGLVEVEKKNQKKAQILYDAIDSSNGFYRCPVDKSVRSLMNVPFTLAKPELEAEFVKTAAGEKMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKEFQAKHG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="24289" PGL_stop="23537"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24289" e_stop="24277"/>
            <exon e_start="24152" e_stop="24136"/>
            <exon e_start="23723" e_stop="23537"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.751" acc_prob="0.000" e_score="0.769"/>
          <exon-intron don_prob="0.179" acc_prob="0.000" e_score="0.471"/>
          <exon-only e_score="0.925"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.769">
            <gDNA_exon_boundary e_start="24289" e_stop="24277" e_length="13"/>
          </exon>
          <intron i_serial="1" don_prob="0.751" acc_prob="0.000">
            <gDNA_intron_boundary i_start="24276" i_stop="24153" i_length="124"/>
          </intron>
          <exon e_serial="2" e_score="0.471">
            <gDNA_exon_boundary e_start="24152" e_stop="24136" e_length="17"/>
          </exon>
          <intron i_serial="2" don_prob="0.179" acc_prob="0.000">
            <gDNA_intron_boundary i_start="24135" i_stop="23724" i_length="412"/>
          </intron>
          <exon e_serial="3" e_score="0.925">
            <gDNA_exon_boundary e_start="23723" e_stop="23537" e_length="187"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24289" stop="24277"/>
              <exon start="24152" stop="24136"/>
              <exon start="23723" stop="23537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446863" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGGTCTTGAGTT : TTTACTAGTTGAGGTTG : AAATTGAAAATACTTCTTCATTAAACTTCTAATAGGACTAAGTAATAGTTTCCATATTTCTAAAAACAAAAACTTCCTAGAAGTACACAAGAATCAATAGGACTAACACATACTCAAGTGTTGTCATTCAGACTCTCTCTCTCAACTCAAATAAACCAACAGAACATAAAGGCACAAAAAAACAGAA</gDNA_template>
            <first_frame> L  V  L  S   : F  Y  *  L  R  L  :  K  L  K  I  L  L  H  *  T  S  N  R  T  K  *  *  F  P  Y  F  *  K  Q  K  L  P  R  S  T  Q  E  S  I  G  L  T  H  T  Q  V  L  S  F  R  L  S  L  S  T  Q  I  N  Q  Q  N  I  K  A  Q  K  N  R  </first_frame>
            <second_frame>  W  S  *  V  :  F  T  S  *  G  * :   N  *  K  Y  F  F  I  K  L  L  I  G  L  S  N  S  F  H  I  S  K  N  K  N  F  L  E  V  H  K  N  Q  *  D  *  H  I  L  K  C  C  H  S  D  S  L  S  Q  L  K  *  T  N  R  T  *  R  H  K  K  T  E </second_frame>
            <third_frame>   G  L  E  F :   L  L  V  E  V   : E  I  E  N  T  S  S  L  N  F  *  *  D  *  V  I  V  S  I  F  L  K  T  K  T  S  *  K  Y  T  R  I  N  R  T  N  T  Y  S  S  V  V  I  Q  T  L  S  L  N  S  N  K  P  T  E  H  K  G  T  K  K  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLe0031D11.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="35945" PGL_stop="24624"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29962" e_stop="29884"/>
            <exon e_start="29808" e_stop="29729"/>
            <exon e_start="28553" e_stop="28425"/>
            <exon e_start="28323" e_stop="28223"/>
            <exon e_start="27972" e_stop="27839"/>
            <exon e_start="27740" e_stop="27643"/>
            <exon e_start="27571" e_stop="27452"/>
            <exon e_start="27335" e_stop="27308"/>
            <exon e_start="27204" e_stop="27146"/>
            <exon e_start="26171" e_stop="26100"/>
            <exon e_start="26024" e_stop="25977"/>
            <exon e_start="25763" e_stop="25658"/>
            <exon e_start="25541" e_stop="25483"/>
            <exon e_start="25031" e_stop="24964"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.418" acc_prob="0.889" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.867" e_score="1.000"/>
          <exon-intron don_prob="0.895" acc_prob="0.903" e_score="1.000"/>
          <exon-intron don_prob="0.678" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.911" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.222" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.924" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.749" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.227" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.926" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="29962" e_stop="29884" e_length="79"/>
          </exon>
          <intron i_serial="1" don_prob="0.418" acc_prob="0.889">
            <gDNA_intron_boundary i_start="29883" i_stop="29809" i_length="75"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="29808" e_stop="29729" e_length="80"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.993">
            <gDNA_intron_boundary i_start="29728" i_stop="28554" i_length="1175"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="28553" e_stop="28425" e_length="129"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.867">
            <gDNA_intron_boundary i_start="28424" i_stop="28324" i_length="101"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="28323" e_stop="28223" e_length="101"/>
          </exon>
          <intron i_serial="4" don_prob="0.895" acc_prob="0.903">
            <gDNA_intron_boundary i_start="28222" i_stop="27973" i_length="250"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="27972" e_stop="27839" e_length="134"/>
          </exon>
          <intron i_serial="5" don_prob="0.678" acc_prob="0.969">
            <gDNA_intron_boundary i_start="27838" i_stop="27741" i_length="98"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="27740" e_stop="27643" e_length="98"/>
          </exon>
          <intron i_serial="6" don_prob="0.911" acc_prob="0.996">
            <gDNA_intron_boundary i_start="27642" i_stop="27572" i_length="71"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="27571" e_stop="27452" e_length="120"/>
          </exon>
          <intron i_serial="7" don_prob="0.222" acc_prob="0.998">
            <gDNA_intron_boundary i_start="27451" i_stop="27336" i_length="116"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="27335" e_stop="27308" e_length="28"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.924">
            <gDNA_intron_boundary i_start="27307" i_stop="27205" i_length="103"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="27204" e_stop="27146" e_length="59"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.749">
            <gDNA_intron_boundary i_start="27145" i_stop="26172" i_length="974"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="26171" e_stop="26100" e_length="72"/>
          </exon>
          <intron i_serial="10" don_prob="0.999" acc_prob="0.227">
            <gDNA_intron_boundary i_start="26099" i_stop="26025" i_length="75"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="26024" e_stop="25977" e_length="48"/>
          </exon>
          <intron i_serial="11" don_prob="1.000" acc_prob="0.986">
            <gDNA_intron_boundary i_start="25976" i_stop="25764" i_length="213"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="25763" e_stop="25658" e_length="106"/>
          </exon>
          <intron i_serial="12" don_prob="0.926" acc_prob="0.987">
            <gDNA_intron_boundary i_start="25657" i_stop="25542" i_length="116"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="25541" e_stop="25483" e_length="59"/>
          </exon>
          <intron i_serial="13" don_prob="0.993" acc_prob="0.984">
            <gDNA_intron_boundary i_start="25482" i_stop="25032" i_length="451"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="25031" e_stop="24964" e_length="68"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29962" stop="29884"/>
              <exon start="29808" stop="29729"/>
              <exon start="28553" stop="28425"/>
              <exon start="28323" stop="28223"/>
              <exon start="27972" stop="27939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266746" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29932" stop="29884"/>
              <exon start="29808" stop="29729"/>
              <exon start="28553" stop="28425"/>
              <exon start="28323" stop="28223"/>
              <exon start="27972" stop="27839"/>
              <exon start="27740" stop="27643"/>
              <exon start="27571" stop="27452"/>
              <exon start="27335" stop="27308"/>
              <exon start="27204" stop="27197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29886" stop="29884"/>
              <exon start="29808" stop="29729"/>
              <exon start="28553" stop="28425"/>
              <exon start="28323" stop="28223"/>
              <exon start="27972" stop="27839"/>
              <exon start="27740" stop="27726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29790" stop="29729"/>
              <exon start="28553" stop="28441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E563630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28286" stop="28223"/>
              <exon start="27972" stop="27839"/>
              <exon start="27740" stop="27643"/>
              <exon start="27571" stop="27452"/>
              <exon start="27335" stop="27308"/>
              <exon start="27204" stop="27146"/>
              <exon start="26171" stop="26105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367005" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28268" stop="28223"/>
              <exon start="27972" stop="27839"/>
              <exon start="27740" stop="27643"/>
              <exon start="27571" stop="27452"/>
              <exon start="27335" stop="27308"/>
              <exon start="27204" stop="27146"/>
              <exon start="26171" stop="26100"/>
              <exon start="26024" stop="25977"/>
              <exon start="25763" stop="25658"/>
              <exon start="25541" stop="25483"/>
              <exon start="25031" stop="24964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28243" stop="28223"/>
              <exon start="27972" stop="27839"/>
              <exon start="27740" stop="27643"/>
              <exon start="27571" stop="27452"/>
              <exon start="27335" stop="27308"/>
              <exon start="27204" stop="27146"/>
              <exon start="26171" stop="26100"/>
              <exon start="26024" stop="25977"/>
              <exon start="25763" stop="25658"/>
              <exon start="25541" stop="25535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28243" stop="28223"/>
              <exon start="27972" stop="27839"/>
              <exon start="27740" stop="27643"/>
              <exon start="27571" stop="27452"/>
              <exon start="27335" stop="27324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240795" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27909" stop="27839"/>
              <exon start="27740" stop="27643"/>
              <exon start="27571" stop="27452"/>
              <exon start="27335" stop="27308"/>
              <exon start="27204" stop="27146"/>
              <exon start="26171" stop="26100"/>
              <exon start="26024" stop="26001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471603" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCCATTCACTCAGAACAAAGCTGGAGATTGCTGAGAGTAACTGCATCCGTGCCGAGATTGAAGCGGCCAAATTTAGAA : GTCAACTGGAGTCACAGTTATCTGCTCAGTCCCAGGTATTAAACTCAAAAGAGGCTGAATTGATGGCGGCCAAAGAAGAG : ATCAATCGCACTCAAAGTGAGTTTTCATCTTACAAGGCTCGTGCTCACGCACTTCTCCAGCGAAAGGATGCTGAATTGGCTGCTGCTAGGGACAGCGAACAACTTAAAGCACTGGAGGAAGCATTGAAG : GAAGTGGAGAAAGAGGTAATGTCAGTCTCTTCTGAAAGGGATAGAGCCCTTCAAGATCTAAAGAGCACCTTAATTAATCATGAGAAGGAACTTTCGGACAG : AGATGAAGCTCTTCGTGCTACAGAGCAACGGATCAGAAGCATGGAAATGAAGTTCAATTCTGCTATTTCTGCTCACCAAAAAGAGAAGGAAGCATGGGAAATAAGCCTTCAAAATGTAGAAGAAACATGGCGAT : TGAAATGTGATGCATTTAAAGCAGAGAGTGTGGTTACCTCTGGTGATAATGTTCAAAAAGAACTAGATGACCTCAAACAAAGCTGTAAAAAACTGAAG : GAAGAGCTTGATTCTTTTCGTGACCTTGCTGATAAGATGATTGAGGAGAAGGACAATGAAATCTCTAGACTTCTAGACGATAACGAGAACCTTCGCCACAAACTTCAGTCTGAATTTTTA : GCCGATCGCAATGGCAATTCCAATACAG : TATATGACAAGCAAGATCCTCTGAATTCGACTACCTCAGCTGCTGATCAGCAGATTCTG : GTCTTGGCGAGACAACAAGCACAAAGAGAAGAAGAGCTTGCTCAGTCACAACGTCACATTCTAGCCCTTCAA : GAGGAGATAGAAGAGCTTGAACGTGAAAATCGTCTCCACAGCCAGCAG : GAAGCTAAGTTGAAAGAGGAGCTTAGGAATATGGATAGATCACAGAAGAGGGAAGGGGTAGATCTGACGTATCTTAAGAATGTCATTTTAAAACTTCTCGAGACAG : GTGAAGTGGAGGCTCTATTACCTGTGGTTGCAATGCTTCTTCAGTTCAGTCCTGAGGAG : ATGCGGAAGTGCCAACAAGCCTATCGCTCCTCCATAGAAGCTCAAGCAAGCCCGTCAAAAGATACATC</gDNA_template>
            <first_frame> C  H  S  L  R  T  K  L  E  I  A  E  S  N  C  I  R  A  E  I  E  A  A  K  F  R   : S  Q  L  E  S  Q  L  S  A  Q  S  Q  V  L  N  S  K  E  A  E  L  M  A  A  K  E  E  :  I  N  R  T  Q  S  E  F  S  S  Y  K  A  R  A  H  A  L  L  Q  R  K  D  A  E  L  A  A  A  R  D  S  E  Q  L  K  A  L  E  E  A  L  K  :  E  V  E  K  E  V  M  S  V  S  S  E  R  D  R  A  L  Q  D  L  K  S  T  L  I  N  H  E  K  E  L  S  D  R :   D  E  A  L  R  A  T  E  Q  R  I  R  S  M  E  M  K  F  N  S  A  I  S  A  H  Q  K  E  K  E  A  W  E  I  S  L  Q  N  V  E  E  T  W  R   : L  K  C  D  A  F  K  A  E  S  V  V  T  S  G  D  N  V  Q  K  E  L  D  D  L  K  Q  S  C  K  K  L  K  :  E  E  L  D  S  F  R  D  L  A  D  K  M  I  E  E  K  D  N  E  I  S  R  L  L  D  D  N  E  N  L  R  H  K  L  Q  S  E  F  L  :  A  D  R  N  G  N  S  N  T   : V  Y  D  K  Q  D  P  L  N  S  T  T  S  A  A  D  Q  Q  I  L  :  V  L  A  R  Q  Q  A  Q  R  E  E  E  L  A  Q  S  Q  R  H  I  L  A  L  Q  :  E  E  I  E  E  L  E  R  E  N  R  L  H  S  Q  Q  :  E  A  K  L  K  E  E  L  R  N  M  D  R  S  Q  K  R  E  G  V  D  L  T  Y  L  K  N  V  I  L  K  L  L  E  T   : G  E  V  E  A  L  L  P  V  V  A  M  L  L  Q  F  S  P  E  E  :  M  R  K  C  Q  Q  A  Y  R  S  S  I  E  A  Q  A  S  P  S  K  D  T   </first_frame>
            <second_frame>  A  I  H  S  E  Q  S  W  R  L  L  R  V  T  A  S  V  P  R  L  K  R  P  N  L  E  :  V  N  W  S  H  S  Y  L  L  S  P  R  Y  *  T  Q  K  R  L  N  *  W  R  P  K  K  R :   S  I  A  L  K  V  S  F  H  L  T  R  L  V  L  T  H  F  S  S  E  R  M  L  N  W  L  L  L  G  T  A  N  N  L  K  H  W  R  K  H  *  R :   K  W  R  K  R  *  C  Q  S  L  L  K  G  I  E  P  F  K  I  *  R  A  P  *  L  I  M  R  R  N  F  R  T   : E  M  K  L  F  V  L  Q  S  N  G  S  E  A  W  K  *  S  S  I  L  L  F  L  L  T  K  K  R  R  K  H  G  K  *  A  F  K  M  *  K  K  H  G  D  :  *  N  V  M  H  L  K  Q  R  V  W  L  P  L  V  I  M  F  K  K  N  *  M  T  S  N  K  A  V  K  N  *  R :   K  S  L  I  L  F  V  T  L  L  I  R  *  L  R  R  R  T  M  K  S  L  D  F  *  T  I  T  R  T  F  A  T  N  F  S  L  N  F  * :   P  I  A  M  A  I  P  I  Q  :  Y  M  T  S  K  I  L  *  I  R  L  P  Q  L  L  I  S  R  F  W :   S  W  R  D  N  K  H  K  E  K  K  S  L  L  S  H  N  V  T  F  *  P  F  K :   R  R  *  K  S  L  N  V  K  I  V  S  T  A  S  R :   K  L  S  *  K  R  S  L  G  I  W  I  D  H  R  R  G  K  G  *  I  *  R  I  L  R  M  S  F  *  N  F  S  R  Q  :  V  K  W  R  L  Y  Y  L  W  L  Q  C  F  F  S  S  V  L  R  R :   C  G  S  A  N  K  P  I  A  P  P  *  K  L  K  Q  A  R  Q  K  I  H  </second_frame>
            <third_frame>   P  F  T  Q  N  K  A  G  D  C  *  E  *  L  H  P  C  R  D  *  S  G  Q  I  *  K :   S  T  G  V  T  V  I  C  S  V  P  G  I  K  L  K  R  G  *  I  D  G  G  Q  R  R   : D  Q  S  H  S  K  *  V  F  I  L  Q  G  S  C  S  R  T  S  P  A  K  G  C  *  I  G  C  C  *  G  Q  R  T  T  *  S  T  G  G  S  I  E   : G  S  G  E  R  G  N  V  S  L  F  *  K  G  *  S  P  S  R  S  K  E  H  L  N  *  S  *  E  G  T  F  G  Q  :  R  *  S  S  S  C  Y  R  A  T  D  Q  K  H  G  N  E  V  Q  F  C  Y  F  C  S  P  K  R  E  G  S  M  G  N  K  P  S  K  C  R  R  N  M  A  I :   E  M  *  C  I  *  S  R  E  C  G  Y  L  W  *  *  C  S  K  R  T  R  *  P  Q  T  K  L  *  K  T  E   : G  R  A  *  F  F  S  *  P  C  *  *  D  D  *  G  E  G  Q  *  N  L  *  T  S  R  R  *  R  E  P  S  P  Q  T  S  V  *  I  F   : S  R  S  Q  W  Q  F  Q  Y  S :   I  *  Q  A  R  S  S  E  F  D  Y  L  S  C  *  S  A  D  S   : G  L  G  E  T  T  S  T  K  R  R  R  A  C  S  V  T  T  S  H  S  S  P  S   : R  G  D  R  R  A  *  T  *  K  S  S  P  Q  P  A   : G  S  *  V  E  R  G  A  *  E  Y  G  *  I  T  E  E  G  R  G  R  S  D  V  S  *  E  C  H  F  K  T  S  R  D  R :   *  S  G  G  S  I  T  C  G  C  N  A  S  S  V  Q  S  *  G   : D  A  E  V  P  T  S  L  S  L  L  H  R  S  S  S  K  P  V  K  R  Y  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0031D11.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29962" stop="29884"/>
                    <exon start="29808" stop="29729"/>
                    <exon start="28553" stop="28425"/>
                    <exon start="28323" stop="28223"/>
                    <exon start="27972" stop="27839"/>
                    <exon start="27740" stop="27643"/>
                    <exon start="27571" stop="27452"/>
                    <exon start="27335" stop="27308"/>
                    <exon start="27204" stop="27146"/>
                    <exon start="26171" stop="26100"/>
                    <exon start="26024" stop="25977"/>
                    <exon start="25763" stop="25658"/>
                    <exon start="25541" stop="25483"/>
                    <exon start="25031" stop="24966"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1179</number_coding_nucleotides>
                  <number_encoded_amino_acids>393</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CHSLRTKLEIAESNCIRAEIEAAKFRSQLESQLSAQSQVLNSKEAELMAAKEEINRTQSEFSSYKARAHALLQRKDAELAAARDSEQLKALEEALKEVEKEVMSVSSERDRALQDLKSTLINHEKELSDRDEALRATEQRIRSMEMKFNSAISAHQKEKEAWEISLQNVEETWRLKCDAFKAESVVTSGDNVQKELDDLKQSCKKLKEELDSFRDLADKMIEEKDNEISRLLDDNENLRHKLQSEFLADRNGNSNTVYDKQDPLNSTTSAADQQILVLARQQAQREEELAQSQRHILALQEEIEELERENRLHSQQEAKLKEELRNMDRSQKREGVDLTYLKNVILKLLETGEVEALLPVVAMLLQFSPEEMRKCQQAYRSSIEAQASPSKDT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="35945" e_stop="35795"/>
            <exon e_start="35223" e_stop="34715"/>
            <exon e_start="34512" e_stop="34397"/>
            <exon e_start="33690" e_stop="33564"/>
            <exon e_start="24985" e_stop="24624"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.945" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="35945" e_stop="35795" e_length="151"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="35794" i_stop="35224" i_length="571"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="35223" e_stop="34715" e_length="509"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.945">
            <gDNA_intron_boundary i_start="34714" i_stop="34513" i_length="202"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="34512" e_stop="34397" e_length="116"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="34396" i_stop="33691" i_length="706"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="33690" e_stop="33564" e_length="127"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="33563" i_stop="24986" i_length="8578"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="24985" e_stop="24624" e_length="362"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35945" stop="35795"/>
              <exon start="35223" stop="34715"/>
              <exon start="34512" stop="34416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542405" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35917" stop="35795"/>
              <exon start="35223" stop="34715"/>
              <exon start="34512" stop="34458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35917" stop="35795"/>
              <exon start="35223" stop="34715"/>
              <exon start="34512" stop="34496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35914" stop="35795"/>
              <exon start="35223" stop="35055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542412" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34800" stop="34715"/>
              <exon start="34512" stop="34397"/>
              <exon start="33690" stop="33564"/>
              <exon start="24985" stop="24624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542415" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34730" stop="34715"/>
              <exon start="34512" stop="34397"/>
              <exon start="33690" stop="33564"/>
              <exon start="24985" stop="24625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302161" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTGAGATTTTTCTTTCTCGATTGATAGATACTCTTCTCAATAAAGGGATTTATTTAGTATTAGACACCGTTTCACTCTTTTTGCCGCTTGGACATTTTACAAGCATCTAGATCTGCAGTTCCCCACTGCTTCATCCATATTACTTCTCAG : TTGATGGATGAAACAGTTTAATCCCTACTTCTCAGAAGCTAAAGAGGAAATAATGGAGGGAGATATTAGTAGTGGGGCTGCAGATAATCACACGGAAGATGCTAGCAAAACAGAGGCACAGTTCAATAGCTTCAATATTGAGAGTGATCATGTAAAGGATAACGGAATATGTGAGAGTCACGAACATACAGGTGATAGCCATGATGATCTTGTACAAATGCTCGTAGAACTTAATTTCCAGAATGAATATCTGAAATCTCAGATTGTGGGATGGCAAAGCATCAACATATATTCTGATGACTCTGGTCAACAAATTAAAACGGCTGCACATGAAAATGTGGCAAGTGATAATTCAGAAGACCTTAATGAGAAGATCGAATCTTTGAATAGAGAACTTTTAGAGGAAAAGCAAACACGAGGTGCTGCAGAGGTAGCACTAAAGCATCTTCAAACTCTATATTTGGAAGCTGACACAAAGGCCCAAGAGTTGTCTGTCAAAGTTGCTGAAG : TACAAAATAAGATGGATCAGGAAATAAAAGAACGTGATGAGAAGTACTCAGAGCTAGACTCGAAGTTCAACAGACTTCACAAACGGGCAAAGCAGCGTATTCAAGAGGTGCAAAAG : GAAAAAGATGATCTTGAGGCCCAGTTTCGTGATGTCAATGAGAAATCTGAGCGCGCATCCTCGCAATTATCTGCATTGCAGCAAGAGTTGGAGCGCAGTAGACAACACGCTCAGGAGGCACTGAAAG : CAAGCCCGTCAAAAGATACATCAGGATCGGGGAGCTCACTGTTTTCTAGATTCTCATTCTCTTAACAGCCAATGAGGGCTGCAGAGATGCTTCCCAAATGTTGTCTTATCCAGCTTCAGTAGATAGTCTGTAGCAGACGTGGAAGGAGAGATACAGTAGAGGAATGTTTTGTGTTCTTATGTAATTAACAAAGAAATGCAAAAGAAGAACAAAACACAAAAAATGAGTAGGCATCCCTTGTCGTTCTTCACACGATATGTATATCAAAGGTATTTCGTTCTTCCTTTTTTTGTTTAATTGAGTGCAGAGAGAGAAGGAAGAGCACATTTGATAGAAATTGTAAAATTTTTGCGTAAGGAAAC</gDNA_template>
            <first_frame> I  E  I  F  L  S  R  L  I  D  T  L  L  N  K  G  I  Y  L  V  L  D  T  V  S  L  F  L  P  L  G  H  F  T  S  I  *  I  C  S  S  P  L  L  H  P  Y  Y  F  S   : V  D  G  *  N  S  L  I  P  T  S  Q  K  L  K  R  K  *  W  R  E  I  L  V  V  G  L  Q  I  I  T  R  K  M  L  A  K  Q  R  H  S  S  I  A  S  I  L  R  V  I  M  *  R  I  T  E  Y  V  R  V  T  N  I  Q  V  I  A  M  M  I  L  Y  K  C  S  *  N  L  I  S  R  M  N  I  *  N  L  R  L  W  D  G  K  A  S  T  Y  I  L  M  T  L  V  N  K  L  K  R  L  H  M  K  M  W  Q  V  I  I  Q  K  T  L  M  R  R  S  N  L  *  I  E  N  F  *  R  K  S  K  H  E  V  L  Q  R  *  H  *  S  I  F  K  L  Y  I  W  K  L  T  Q  R  P  K  S  C  L  S  K  L  L  K  :  Y  K  I  R  W  I  R  K  *  K  N  V  M  R  S  T  Q  S  *  T  R  S  S  T  D  F  T  N  G  Q  S  S  V  F  K  R  C  K  R :   K  K  M  I  L  R  P  S  F  V  M  S  M  R  N  L  S  A  H  P  R  N  Y  L  H  C  S  K  S  W  S  A  V  D  N  T  L  R  R  H  *  K  :  Q  A  R  Q  K  I  H  Q  D  R  G  A  H  C  F  L  D  S  H  S  L  N  S  Q  *  G  L  Q  R  C  F  P  N  V  V  L  S  S  F  S  R  *  S  V  A  D  V  E  G  E  I  Q  *  R  N  V  L  C  S  Y  V  I  N  K  E  M  Q  K  K  N  K  T  Q  K  M  S  R  H  P  L  S  F  F  T  R  Y  V  Y  Q  R  Y  F  V  L  P  F  F  V  *  L  S  A  E  R  E  G  R  A  H  L  I  E  I  V  K  F  L  R  K  E   </first_frame>
            <second_frame>  L  R  F  F  F  L  D  *  *  I  L  F  S  I  K  G  F  I  *  Y  *  T  P  F  H  S  F  C  R  L  D  I  L  Q  A  S  R  S  A  V  P  H  C  F  I  H  I  T  S  Q  :  L  M  D  E  T  V  *  S  L  L  L  R  S  *  R  G  N  N  G  G  R  Y  *  *  W  G  C  R  *  S  H  G  R  C  *  Q  N  R  G  T  V  Q  *  L  Q  Y  *  E  *  S  C  K  G  *  R  N  M  *  E  S  R  T  Y  R  *  *  P  *  *  S  C  T  N  A  R  R  T  *  F  P  E  *  I  S  E  I  S  D  C  G  M  A  K  H  Q  H  I  F  *  *  L  W  S  T  N  *  N  G  C  T  *  K  C  G  K  *  *  F  R  R  P  *  *  E  D  R  I  F  E  *  R  T  F  R  G  K  A  N  T  R  C  C  R  G  S  T  K  A  S  S  N  S  I  F  G  S  *  H  K  G  P  R  V  V  C  Q  S  C  *  S :   T  K  *  D  G  S  G  N  K  R  T  *  *  E  V  L  R  A  R  L  E  V  Q  Q  T  S  Q  T  G  K  A  A  Y  S  R  G  A  K   : G  K  R  *  S  *  G  P  V  S  *  C  Q  *  E  I  *  A  R  I  L  A  I  I  C  I  A  A  R  V  G  A  Q  *  T  T  R  S  G  G  T  E  S :   K  P  V  K  R  Y  I  R  I  G  E  L  T  V  F  *  I  L  I  L  L  T  A  N  E  G  C  R  D  A  S  Q  M  L  S  Y  P  A  S  V  D  S  L  *  Q  T  W  K  E  R  Y  S  R  G  M  F  C  V  L  M  *  L  T  K  K  C  K  R  R  T  K  H  K  K  *  V  G  I  P  C  R  S  S  H  D  M  Y  I  K  G  I  S  F  F  L  F  L  F  N  *  V  Q  R  E  K  E  E  H  I  *  *  K  L  *  N  F  C  V  R  K  </second_frame>
            <third_frame>   *  D  F  S  F  S  I  D  R  Y  S  S  Q  *  R  D  L  F  S  I  R  H  R  F  T  L  F  A  A  W  T  F  Y  K  H  L  D  L  Q  F  P  T  A  S  S  I  L  L  L  S :   *  W  M  K  Q  F  N  P  Y  F  S  E  A  K  E  E  I  M  E  G  D  I  S  S  G  A  A  D  N  H  T  E  D  A  S  K  T  E  A  Q  F  N  S  F  N  I  E  S  D  H  V  K  D  N  G  I  C  E  S  H  E  H  T  G  D  S  H  D  D  L  V  Q  M  L  V  E  L  N  F  Q  N  E  Y  L  K  S  Q  I  V  G  W  Q  S  I  N  I  Y  S  D  D  S  G  Q  Q  I  K  T  A  A  H  E  N  V  A  S  D  N  S  E  D  L  N  E  K  I  E  S  L  N  R  E  L  L  E  E  K  Q  T  R  G  A  A  E  V  A  L  K  H  L  Q  T  L  Y  L  E  A  D  T  K  A  Q  E  L  S  V  K  V  A  E   : V  Q  N  K  M  D  Q  E  I  K  E  R  D  E  K  Y  S  E  L  D  S  K  F  N  R  L  H  K  R  A  K  Q  R  I  Q  E  V  Q  K  :  E  K  D  D  L  E  A  Q  F  R  D  V  N  E  K  S  E  R  A  S  S  Q  L  S  A  L  Q  Q  E  L  E  R  S  R  Q  H  A  Q  E  A  L  K   : A  S  P  S  K  D  T  S  G  S  G  S  S  L  F  S  R  F  S  F  S  *  Q  P  M  R  A  A  E  M  L  P  K  C  C  L  I  Q  L  Q  *  I  V  C  S  R  R  G  R  R  D  T  V  E  E  C  F  V  F  L  C  N  *  Q  R  N  A  K  E  E  Q  N  T  K  N  E  *  A  S  L  V  V  L  H  T  I  C  I  S  K  V  F  R  S  S  F  F  C  L  I  E  C  R  E  R  R  K  S  T  F  D  R  N  C  K  I  F  A  *  G  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0031D11.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35219" stop="34715"/>
                    <exon start="34512" stop="34397"/>
                    <exon start="33690" stop="33564"/>
                    <exon start="24985" stop="24921"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>810</number_coding_nucleotides>
                  <number_encoded_amino_acids>270</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WMKQFNPYFSEAKEEIMEGDISSGAADNHTEDASKTEAQFNSFNIESDHVKDNGICESHEHTGDSHDDLVQMLVELNFQNEYLKSQIVGWQSINIYSDDSGQQIKTAAHENVASDNSEDLNEKIESLNRELLEEKQTRGAAEVALKHLQTLYLEADTKAQELSVKVAEVQNKMDQEIKERDEKYSELDSKFNRLHKRAKQRIQEVQKEKDDLEAQFRDVNEKSERASSQLSALQQELERSRQHAQEALKASPSKDTSGSGSSLFSRFSFS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="27573" e_stop="27452"/>
            <exon e_start="27335" e_stop="27308"/>
            <exon e_start="27204" e_stop="26754"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.222" acc_prob="0.998" e_score="0.959"/>
          <exon-intron don_prob="1.000" acc_prob="0.924" e_score="0.929"/>
          <exon-only e_score="0.887"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.959">
            <gDNA_exon_boundary e_start="27573" e_stop="27452" e_length="122"/>
          </exon>
          <intron i_serial="1" don_prob="0.222" acc_prob="0.998">
            <gDNA_intron_boundary i_start="27451" i_stop="27336" i_length="116"/>
          </intron>
          <exon e_serial="2" e_score="0.929">
            <gDNA_exon_boundary e_start="27335" e_stop="27308" e_length="28"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.924">
            <gDNA_intron_boundary i_start="27307" i_stop="27205" i_length="103"/>
          </intron>
          <exon e_serial="3" e_score="0.887">
            <gDNA_exon_boundary e_start="27204" e_stop="26754" e_length="451"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27573" stop="27452"/>
              <exon start="27335" stop="27308"/>
              <exon start="27204" stop="26754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27573" stop="27452"/>
              <exon start="27335" stop="27308"/>
              <exon start="27204" stop="26903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429215" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGAAGAGCTTGATTCTTTTCGTGACCTTGCTGATAAGATGATTGAGGAGAAGGACAATGAAATCTCTAGACTTCTAGACGATAACGAGAACCTTCGCCACAAACTTCAGTCTGAATTTTTA : GCCGATCGCAATGGCAATTCCAATACAG : TATATGACAAGCAAGATCCTCTGAATTCGACTACCTCAGCTGCTGATCAGCAGATTCTGGTATGGACAATTTTCTAGTTACATTACTGTGCAATATTTTCATCAGTTACTGCAAAGGGGAAAAAGAAAATCAAAGAATGAGACAGAGATTAGTACAAGGGGCAACAGTTTTAAAGTCCAACCCAAACATGGTCTGGCATGCTTTATGCTTTAGACATGTCCTTTTTCGCCTTAATATACACCATCGGGACACCTTTAGCCTCCAAACGCCTCAAGAGAACATCCCTTGGGACTTTGTCATAGGCCTTTTCAAGGTCAATGAACGCCATATGAAAGTCCCTCTTCCTTTCAATATACTTCTCCACCAATCTCCGCACAAGGTGGATGGCTTCAGTAGTCGAAATCCCCGGCATGAACCCAAATTGATCCTCAATAATGGACACTCCTTTACT</gDNA_template>
            <first_frame> R  K  S  L  I  L  F  V  T  L  L  I  R  *  L  R  R  R  T  M  K  S  L  D  F  *  T  I  T  R  T  F  A  T  N  F  S  L  N  F  * :   P  I  A  M  A  I  P  I  Q  :  Y  M  T  S  K  I  L  *  I  R  L  P  Q  L  L  I  S  R  F  W  Y  G  Q  F  S  S  Y  I  T  V  Q  Y  F  H  Q  L  L  Q  R  G  K  R  K  S  K  N  E  T  E  I  S  T  R  G  N  S  F  K  V  Q  P  K  H  G  L  A  C  F  M  L  *  T  C  P  F  S  P  *  Y  T  P  S  G  H  L  *  P  P  N  A  S  R  E  H  P  L  G  L  C  H  R  P  F  Q  G  Q  *  T  P  Y  E  S  P  S  S  F  Q  Y  T  S  P  P  I  S  A  Q  G  G  W  L  Q  *  S  K  S  P  A  *  T  Q  I  D  P  Q  *  W  T  L  L  Y  </first_frame>
            <second_frame>  G  R  A  *  F  F  S  *  P  C  *  *  D  D  *  G  E  G  Q  *  N  L  *  T  S  R  R  *  R  E  P  S  P  Q  T  S  V  *  I  F   : S  R  S  Q  W  Q  F  Q  Y  S :   I  *  Q  A  R  S  S  E  F  D  Y  L  S  C  *  S  A  D  S  G  M  D  N  F  L  V  T  L  L  C  N  I  F  I  S  Y  C  K  G  E  K  E  N  Q  R  M  R  Q  R  L  V  Q  G  A  T  V  L  K  S  N  P  N  M  V  W  H  A  L  C  F  R  H  V  L  F  R  L  N  I  H  H  R  D  T  F  S  L  Q  T  P  Q  E  N  I  P  W  D  F  V  I  G  L  F  K  V  N  E  R  H  M  K  V  P  L  P  F  N  I  L  L  H  Q  S  P  H  K  V  D  G  F  S  S  R  N  P  R  H  E  P  K  L  I  L  N  N  G  H  S  F  T </second_frame>
            <third_frame>   E  E  L  D  S  F  R  D  L  A  D  K  M  I  E  E  K  D  N  E  I  S  R  L  L  D  D  N  E  N  L  R  H  K  L  Q  S  E  F  L  :  A  D  R  N  G  N  S  N  T   : V  Y  D  K  Q  D  P  L  N  S  T  T  S  A  A  D  Q  Q  I  L  V  W  T  I  F  *  L  H  Y  C  A  I  F  S  S  V  T  A  K  G  K  K  K  I  K  E  *  D  R  D  *  Y  K  G  Q  Q  F  *  S  P  T  Q  T  W  S  G  M  L  Y  A  L  D  M  S  F  F  A  L  I  Y  T  I  G  T  P  L  A  S  K  R  L  K  R  T  S  L  G  T  L  S  *  A  F  S  R  S  M  N  A  I  *  K  S  L  F  L  S  I  Y  F  S  T  N  L  R  T  R  W  M  A  S  V  V  E  I  P  G  M  N  P  N  *  S  S  I  M  D  T  P  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0031D11.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27158" stop="26754"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>405</number_coding_nucleotides>
                  <number_encoded_amino_acids>135</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SADSGMDNFLVTLLCNIFISYCKGEKENQRMRQRLVQGATVLKSNPNMVWHALCFRHVLFRLNIHHRDTFSLQTPQENIPWDFVIGLFKVNERHMKVPLPFNILLHQSPHKVDGFSSRNPRHEPKLILNNGHSFT</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0031D11.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27571" stop="27452"/>
                    <exon start="27335" stop="27308"/>
                    <exon start="27204" stop="27128"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EELDSFRDLADKMIEEKDNEISRLLDDNENLRHKLQSEFLADRNGNSNTVYDKQDPLNSTTSAADQQILVWTIF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="43350" PGL_stop="37468"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43350" e_stop="43080"/>
            <exon e_start="42236" e_stop="42039"/>
            <exon e_start="41946" e_stop="41887"/>
            <exon e_start="41440" e_stop="41345"/>
            <exon e_start="41240" e_stop="41216"/>
            <exon e_start="41039" e_stop="40945"/>
            <exon e_start="39247" e_stop="39062"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.716" acc_prob="0.765" e_score="1.000"/>
          <exon-intron don_prob="0.518" acc_prob="0.714" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.947" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="43350" e_stop="43080" e_length="271"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.968">
            <gDNA_intron_boundary i_start="43079" i_stop="42237" i_length="843"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42236" e_stop="42039" e_length="198"/>
          </exon>
          <intron i_serial="2" don_prob="0.716" acc_prob="0.765">
            <gDNA_intron_boundary i_start="42038" i_stop="41947" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="41946" e_stop="41887" e_length="60"/>
          </exon>
          <intron i_serial="3" don_prob="0.518" acc_prob="0.714">
            <gDNA_intron_boundary i_start="41886" i_stop="41441" i_length="446"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="41440" e_stop="41345" e_length="96"/>
          </exon>
          <intron i_serial="4" don_prob="0.987" acc_prob="0.999">
            <gDNA_intron_boundary i_start="41344" i_stop="41241" i_length="104"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="41240" e_stop="41216" e_length="25"/>
          </exon>
          <intron i_serial="5" don_prob="0.990" acc_prob="0.947">
            <gDNA_intron_boundary i_start="41215" i_stop="41040" i_length="176"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="41039" e_stop="40945" e_length="95"/>
          </exon>
          <intron i_serial="6" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="40944" i_stop="39248" i_length="1697"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="39247" e_stop="39062" e_length="186"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43350" stop="43080"/>
              <exon start="42236" stop="42039"/>
              <exon start="41946" stop="41887"/>
              <exon start="41440" stop="41390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213273" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43284" stop="43080"/>
              <exon start="42236" stop="42039"/>
              <exon start="41946" stop="41887"/>
              <exon start="41440" stop="41345"/>
              <exon start="41240" stop="41216"/>
              <exon start="41039" stop="40973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43171" stop="43080"/>
              <exon start="42236" stop="42039"/>
              <exon start="41946" stop="41887"/>
              <exon start="41440" stop="41345"/>
              <exon start="41240" stop="41216"/>
              <exon start="41039" stop="40945"/>
              <exon start="39247" stop="39143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43171" stop="43080"/>
              <exon start="42236" stop="42039"/>
              <exon start="41946" stop="41887"/>
              <exon start="41440" stop="41345"/>
              <exon start="41240" stop="41216"/>
              <exon start="41039" stop="40945"/>
              <exon start="39247" stop="39143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E432333" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43097" stop="43080"/>
              <exon start="42236" stop="42039"/>
              <exon start="41946" stop="41887"/>
              <exon start="41440" stop="41345"/>
              <exon start="41240" stop="41216"/>
              <exon start="41039" stop="40945"/>
              <exon start="39247" stop="39222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42154" stop="42039"/>
              <exon start="41946" stop="41887"/>
              <exon start="41440" stop="41345"/>
              <exon start="41240" stop="41216"/>
              <exon start="41039" stop="40945"/>
              <exon start="39247" stop="39062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298263" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATCAAAAAATGGCTTGTTCTTGTTTGAGCGACGATACTTGGTTCGCTCTTTCTCAAATGCGTACCACCACCACCTTACAGGTCGAAGATCCACAAATAATCGGACCCAATTCCCCCGGCATGCCCGAGTACTGTTTAGAAAAAGTTTTCCCCGTTTACGCGGTTGGCGTTTCCGAACCCGACCCGAACTTGATCGTCTCTGTCGCTAACACCGCTTCTACTCTTGGTGACCCTATTTGGGATGCTGTAAAGCTTGAAGCAAAGCTTGAG : GCAGAGAAGGAGCCAATATTAAGCAGCTTCTTGTACGCAAGTATTTTGACTCATGATTGTTTGGAACGGGCATTGAGCTTTGTTCTTTCCAACCGTCTGCAAAATCCTACACTTTTGGCAACTCAATTAATGGACATATTCTCTGATGTAATAATGCACAATCGGTGCATCCAATGCTCTATTCGACTTGATTTACAG : GCATGTAAAGATAGAGATCCTTCATGTTTGTCATACTGTTCTGCTCTTTTGTACCTTAAG : GGTTATCATGCTTTACAAACACATCGAGTTGCACATACGCTATGGAATCAAGGGCGCAAAGTCTTGGCATTGGCGTTACAAAGTCGAGTTAGTGAG : GTTTTTGGAGTTGATATACATCCAG : CTGCCCAAATTGGAGAGGGAATTCTTCTGGATCATGCCACTGGTGTTGTAATTGGTGAAACTGCTGTCATAGGGAATAGAGTTTCACTTATGCAG : GGCGTAACCTTGGGAGGTACTGGGAAAGAGATTGGTGATAGGCATCCCAAAATAGGTCAAGGTGCACTGATTGGAGCTAGTGCAACTATACTTGGAAATATAGAAATAGGGGAAGGTGCAATGGTTGGTGCTGGTTCCCTTGTGATGAAGGATGTTCCTCCCCACAGGTTGAGTATTATATATTTA</gDNA_template>
            <first_frame> K  S  K  N  G  L  F  L  F  E  R  R  Y  L  V  R  S  F  S  N  A  Y  H  H  H  L  T  G  R  R  S  T  N  N  R  T  Q  F  P  R  H  A  R  V  L  F  R  K  S  F  P  R  L  R  G  W  R  F  R  T  R  P  E  L  D  R  L  C  R  *  H  R  F  Y  S  W  *  P  Y  L  G  C  C  K  A  *  S  K  A  *   : G  R  E  G  A  N  I  K  Q  L  L  V  R  K  Y  F  D  S  *  L  F  G  T  G  I  E  L  C  S  F  Q  P  S  A  K  S  Y  T  F  G  N  S  I  N  G  H  I  L  *  C  N  N  A  Q  S  V  H  P  M  L  Y  S  T  *  F  T   : G  M  *  R  *  R  S  F  M  F  V  I  L  F  C  S  F  V  P  *   : G  L  S  C  F  T  N  T  S  S  C  T  Y  A  M  E  S  R  A  Q  S  L  G  I  G  V  T  K  S  S  *  *   : G  F  W  S  *  Y  T  S  S :   C  P  N  W  R  G  N  S  S  G  S  C  H  W  C  C  N  W  *  N  C  C  H  R  E  *  S  F  T  Y  A   : G  R  N  L  G  R  Y  W  E  R  D  W  *  *  A  S  Q  N  R  S  R  C  T  D  W  S  *  C  N  Y  T  W  K  Y  R  N  R  G  R  C  N  G  W  C  W  F  P  C  D  E  G  C  S  S  P  Q  V  E  Y  Y  I  F  </first_frame>
            <second_frame>  N  Q  K  M  A  C  S  C  L  S  D  D  T  W  F  A  L  S  Q  M  R  T  T  T  T  L  Q  V  E  D  P  Q  I  I  G  P  N  S  P  G  M  P  E  Y  C  L  E  K  V  F  P  V  Y  A  V  G  V  S  E  P  D  P  N  L  I  V  S  V  A  N  T  A  S  T  L  G  D  P  I  W  D  A  V  K  L  E  A  K  L  E  :  A  E  K  E  P  I  L  S  S  F  L  Y  A  S  I  L  T  H  D  C  L  E  R  A  L  S  F  V  L  S  N  R  L  Q  N  P  T  L  L  A  T  Q  L  M  D  I  F  S  D  V  I  M  H  N  R  C  I  Q  C  S  I  R  L  D  L  Q  :  A  C  K  D  R  D  P  S  C  L  S  Y  C  S  A  L  L  Y  L  K  :  G  Y  H  A  L  Q  T  H  R  V  A  H  T  L  W  N  Q  G  R  K  V  L  A  L  A  L  Q  S  R  V  S  E  :  V  F  G  V  D  I  H  P   : A  A  Q  I  G  E  G  I  L  L  D  H  A  T  G  V  V  I  G  E  T  A  V  I  G  N  R  V  S  L  M  Q  :  G  V  T  L  G  G  T  G  K  E  I  G  D  R  H  P  K  I  G  Q  G  A  L  I  G  A  S  A  T  I  L  G  N  I  E  I  G  E  G  A  M  V  G  A  G  S  L  V  M  K  D  V  P  P  H  R  L  S  I  I  Y  L </second_frame>
            <third_frame>   I  K  K  W  L  V  L  V  *  A  T  I  L  G  S  L  F  L  K  C  V  P  P  P  P  Y  R  S  K  I  H  K  *  S  D  P  I  P  P  A  C  P  S  T  V  *  K  K  F  S  P  F  T  R  L  A  F  P  N  P  T  R  T  *  S  S  L  S  L  T  P  L  L  L  L  V  T  L  F  G  M  L  *  S  L  K  Q  S  L  R :   Q  R  R  S  Q  Y  *  A  A  S  C  T  Q  V  F  *  L  M  I  V  W  N  G  H  *  A  L  F  F  P  T  V  C  K  I  L  H  F  W  Q  L  N  *  W  T  Y  S  L  M  *  *  C  T  I  G  A  S  N  A  L  F  D  L  I  Y  R :   H  V  K  I  E  I  L  H  V  C  H  T  V  L  L  F  C  T  L  R :   V  I  M  L  Y  K  H  I  E  L  H  I  R  Y  G  I  K  G  A  K  S  W  H  W  R  Y  K  V  E  L  V  R :   F  L  E  L  I  Y  I  Q  :  L  P  K  L  E  R  E  F  F  W  I  M  P  L  V  L  *  L  V  K  L  L  S  *  G  I  E  F  H  L  C  R :   A  *  P  W  E  V  L  G  K  R  L  V  I  G  I  P  K  *  V  K  V  H  *  L  E  L  V  Q  L  Y  L  E  I  *  K  *  G  K  V  Q  W  L  V  L  V  P  L  *  *  R  M  F  L  P  T  G  *  V  L  Y  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0031D11.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43349" stop="43080"/>
                    <exon start="42236" stop="42039"/>
                    <exon start="41946" stop="41887"/>
                    <exon start="41440" stop="41345"/>
                    <exon start="41240" stop="41216"/>
                    <exon start="41039" stop="40945"/>
                    <exon start="39247" stop="39062"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>930</number_coding_nucleotides>
                  <number_encoded_amino_acids>310</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NQKMACSCLSDDTWFALSQMRTTTTLQVEDPQIIGPNSPGMPEYCLEKVFPVYAVGVSEPDPNLIVSVANTASTLGDPIWDAVKLEAKLEAEKEPILSSFLYASILTHDCLERALSFVLSNRLQNPTLLATQLMDIFSDVIMHNRCIQCSIRLDLQACKDRDPSCLSYCSALLYLKGYHALQTHRVAHTLWNQGRKVLALALQSRVSEVFGVDIHPAAQIGEGILLDHATGVVIGETAVIGNRVSLMQGVTLGGTGKEIGDRHPKIGQGALIGASATILGNIEIGEGAMVGAGSLVMKDVPPHRLSIIYL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="43350" e_stop="43080"/>
            <exon e_start="42236" e_stop="42039"/>
            <exon e_start="41946" e_stop="41887"/>
            <exon e_start="41440" e_stop="41345"/>
            <exon e_start="41240" e_stop="41216"/>
            <exon e_start="41039" e_stop="40945"/>
            <exon e_start="39247" e_stop="39081"/>
            <exon e_start="38983" e_stop="38910"/>
            <exon e_start="38068" e_stop="38009"/>
            <exon e_start="37768" e_stop="37468"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.716" acc_prob="0.765" e_score="1.000"/>
          <exon-intron don_prob="0.518" acc_prob="0.714" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.947" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.996" e_score="0.976"/>
          <exon-intron don_prob="0.972" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.915" acc_prob="0.999" e_score="0.983"/>
          <exon-only e_score="0.870"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="43350" e_stop="43080" e_length="271"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.968">
            <gDNA_intron_boundary i_start="43079" i_stop="42237" i_length="843"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42236" e_stop="42039" e_length="198"/>
          </exon>
          <intron i_serial="2" don_prob="0.716" acc_prob="0.765">
            <gDNA_intron_boundary i_start="42038" i_stop="41947" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="41946" e_stop="41887" e_length="60"/>
          </exon>
          <intron i_serial="3" don_prob="0.518" acc_prob="0.714">
            <gDNA_intron_boundary i_start="41886" i_stop="41441" i_length="446"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="41440" e_stop="41345" e_length="96"/>
          </exon>
          <intron i_serial="4" don_prob="0.987" acc_prob="0.999">
            <gDNA_intron_boundary i_start="41344" i_stop="41241" i_length="104"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="41240" e_stop="41216" e_length="25"/>
          </exon>
          <intron i_serial="5" don_prob="0.990" acc_prob="0.947">
            <gDNA_intron_boundary i_start="41215" i_stop="41040" i_length="176"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="41039" e_stop="40945" e_length="95"/>
          </exon>
          <intron i_serial="6" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="40944" i_stop="39248" i_length="1697"/>
          </intron>
          <exon e_serial="7" e_score="0.976">
            <gDNA_exon_boundary e_start="39247" e_stop="39081" e_length="167"/>
          </exon>
          <intron i_serial="7" don_prob="0.996" acc_prob="0.996">
            <gDNA_intron_boundary i_start="39080" i_stop="38984" i_length="97"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="38983" e_stop="38910" e_length="74"/>
          </exon>
          <intron i_serial="8" don_prob="0.972" acc_prob="0.997">
            <gDNA_intron_boundary i_start="38909" i_stop="38069" i_length="841"/>
          </intron>
          <exon e_serial="9" e_score="0.983">
            <gDNA_exon_boundary e_start="38068" e_stop="38009" e_length="60"/>
          </exon>
          <intron i_serial="9" don_prob="0.915" acc_prob="0.999">
            <gDNA_intron_boundary i_start="38008" i_stop="37769" i_length="240"/>
          </intron>
          <exon e_serial="10" e_score="0.870">
            <gDNA_exon_boundary e_start="37768" e_stop="37468" e_length="301"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43350" stop="43080"/>
              <exon start="42236" stop="42039"/>
              <exon start="41946" stop="41887"/>
              <exon start="41440" stop="41390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213273" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43284" stop="43080"/>
              <exon start="42236" stop="42039"/>
              <exon start="41946" stop="41887"/>
              <exon start="41440" stop="41345"/>
              <exon start="41240" stop="41216"/>
              <exon start="41039" stop="40973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43171" stop="43080"/>
              <exon start="42236" stop="42039"/>
              <exon start="41946" stop="41887"/>
              <exon start="41440" stop="41345"/>
              <exon start="41240" stop="41216"/>
              <exon start="41039" stop="40945"/>
              <exon start="39247" stop="39143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43171" stop="43080"/>
              <exon start="42236" stop="42039"/>
              <exon start="41946" stop="41887"/>
              <exon start="41440" stop="41345"/>
              <exon start="41240" stop="41216"/>
              <exon start="41039" stop="40945"/>
              <exon start="39247" stop="39143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E432333" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43097" stop="43080"/>
              <exon start="42236" stop="42039"/>
              <exon start="41946" stop="41887"/>
              <exon start="41440" stop="41345"/>
              <exon start="41240" stop="41216"/>
              <exon start="41039" stop="40945"/>
              <exon start="39247" stop="39222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41011" stop="40945"/>
              <exon start="39247" stop="39081"/>
              <exon start="38983" stop="38910"/>
              <exon start="38068" stop="38009"/>
              <exon start="37768" stop="37468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574168" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATCAAAAAATGGCTTGTTCTTGTTTGAGCGACGATACTTGGTTCGCTCTTTCTCAAATGCGTACCACCACCACCTTACAGGTCGAAGATCCACAAATAATCGGACCCAATTCCCCCGGCATGCCCGAGTACTGTTTAGAAAAAGTTTTCCCCGTTTACGCGGTTGGCGTTTCCGAACCCGACCCGAACTTGATCGTCTCTGTCGCTAACACCGCTTCTACTCTTGGTGACCCTATTTGGGATGCTGTAAAGCTTGAAGCAAAGCTTGAG : GCAGAGAAGGAGCCAATATTAAGCAGCTTCTTGTACGCAAGTATTTTGACTCATGATTGTTTGGAACGGGCATTGAGCTTTGTTCTTTCCAACCGTCTGCAAAATCCTACACTTTTGGCAACTCAATTAATGGACATATTCTCTGATGTAATAATGCACAATCGGTGCATCCAATGCTCTATTCGACTTGATTTACAG : GCATGTAAAGATAGAGATCCTTCATGTTTGTCATACTGTTCTGCTCTTTTGTACCTTAAG : GGTTATCATGCTTTACAAACACATCGAGTTGCACATACGCTATGGAATCAAGGGCGCAAAGTCTTGGCATTGGCGTTACAAAGTCGAGTTAGTGAG : GTTTTTGGAGTTGATATACATCCAG : CTGCCCAAATTGGAGAGGGAATTCTTCTGGATCATGCCACTGGTGTTGTAATTGGTGAAACTGCTGTCATAGGGAATAGAGTTTCACTTATGCAG : GGCGTAACCTTGGGAGGTACTGGGAAAGAGATTGGTGATAGGCATCCCAAAATAGGTCAAGGTGCACTGATTGGAGCTAGTGCAACTATACTTGGAAATATAGAAATAGGGGAAGGTGCAATGGTTGGTGCTGGTTCCCTTGTGATGAAGGATGTTCCTCCCCACAG : TATGGTGACAGGAATACCAGCAAAGGTGATTGGTTATGTAGATGATCAAGATCCATCTTTAACTATGAAGCATG : ATGCCAGCAAGGAGTTCTTTAAACAAGTAGCCATTCGCTGCAAGGAAGCAAGATCCAATG : GAGCGGTTGCTTCAAAGGACGATGGCTCAACATGAGATTGATGAAGATACATCTTCGTTTGACTATTAACCCCCAATTCACTTCAATGTGTGAAAATGATTTTAGTATTTTCACCATCTTTAATACTACTATAGGATTTCTAAAAATAGAAAAAATAAAGCTCCTCTTTAAAGATTGATCATCATTCAATCGACGTGTAATGCCATGTATGTGTGCCCTTTTAAATTATGTTACTGTATTATTTCTTTCTCCAGGAGATTTGTCATTTTGTATATTTGTTTGAATTAATGCTATAACGAAA</gDNA_template>
            <first_frame> K  S  K  N  G  L  F  L  F  E  R  R  Y  L  V  R  S  F  S  N  A  Y  H  H  H  L  T  G  R  R  S  T  N  N  R  T  Q  F  P  R  H  A  R  V  L  F  R  K  S  F  P  R  L  R  G  W  R  F  R  T  R  P  E  L  D  R  L  C  R  *  H  R  F  Y  S  W  *  P  Y  L  G  C  C  K  A  *  S  K  A  *   : G  R  E  G  A  N  I  K  Q  L  L  V  R  K  Y  F  D  S  *  L  F  G  T  G  I  E  L  C  S  F  Q  P  S  A  K  S  Y  T  F  G  N  S  I  N  G  H  I  L  *  C  N  N  A  Q  S  V  H  P  M  L  Y  S  T  *  F  T   : G  M  *  R  *  R  S  F  M  F  V  I  L  F  C  S  F  V  P  *   : G  L  S  C  F  T  N  T  S  S  C  T  Y  A  M  E  S  R  A  Q  S  L  G  I  G  V  T  K  S  S  *  *   : G  F  W  S  *  Y  T  S  S :   C  P  N  W  R  G  N  S  S  G  S  C  H  W  C  C  N  W  *  N  C  C  H  R  E  *  S  F  T  Y  A   : G  R  N  L  G  R  Y  W  E  R  D  W  *  *  A  S  Q  N  R  S  R  C  T  D  W  S  *  C  N  Y  T  W  K  Y  R  N  R  G  R  C  N  G  W  C  W  F  P  C  D  E  G  C  S  S  P  Q  :  Y  G  D  R  N  T  S  K  G  D  W  L  C  R  *  S  R  S  I  F  N  Y  E  A  * :   C  Q  Q  G  V  L  *  T  S  S  H  S  L  Q  G  S  K  I  Q  W :   S  G  C  F  K  G  R  W  L  N  M  R  L  M  K  I  H  L  R  L  T  I  N  P  Q  F  T  S  M  C  E  N  D  F  S  I  F  T  I  F  N  T  T  I  G  F  L  K  I  E  K  I  K  L  L  F  K  D  *  S  S  F  N  R  R  V  M  P  C  M  C  A  L  L  N  Y  V  T  V  L  F  L  S  P  G  D  L  S  F  C  I  F  V  *  I  N  A  I  T  K </first_frame>
            <second_frame>  N  Q  K  M  A  C  S  C  L  S  D  D  T  W  F  A  L  S  Q  M  R  T  T  T  T  L  Q  V  E  D  P  Q  I  I  G  P  N  S  P  G  M  P  E  Y  C  L  E  K  V  F  P  V  Y  A  V  G  V  S  E  P  D  P  N  L  I  V  S  V  A  N  T  A  S  T  L  G  D  P  I  W  D  A  V  K  L  E  A  K  L  E  :  A  E  K  E  P  I  L  S  S  F  L  Y  A  S  I  L  T  H  D  C  L  E  R  A  L  S  F  V  L  S  N  R  L  Q  N  P  T  L  L  A  T  Q  L  M  D  I  F  S  D  V  I  M  H  N  R  C  I  Q  C  S  I  R  L  D  L  Q  :  A  C  K  D  R  D  P  S  C  L  S  Y  C  S  A  L  L  Y  L  K  :  G  Y  H  A  L  Q  T  H  R  V  A  H  T  L  W  N  Q  G  R  K  V  L  A  L  A  L  Q  S  R  V  S  E  :  V  F  G  V  D  I  H  P   : A  A  Q  I  G  E  G  I  L  L  D  H  A  T  G  V  V  I  G  E  T  A  V  I  G  N  R  V  S  L  M  Q  :  G  V  T  L  G  G  T  G  K  E  I  G  D  R  H  P  K  I  G  Q  G  A  L  I  G  A  S  A  T  I  L  G  N  I  E  I  G  E  G  A  M  V  G  A  G  S  L  V  M  K  D  V  P  P  H  S :   M  V  T  G  I  P  A  K  V  I  G  Y  V  D  D  Q  D  P  S  L  T  M  K  H   : D  A  S  K  E  F  F  K  Q  V  A  I  R  C  K  E  A  R  S  N   : G  A  V  A  S  K  D  D  G  S  T  *  D  *  *  R  Y  I  F  V  *  L  L  T  P  N  S  L  Q  C  V  K  M  I  L  V  F  S  P  S  L  I  L  L  *  D  F  *  K  *  K  K  *  S  S  S  L  K  I  D  H  H  S  I  D  V  *  C  H  V  C  V  P  F  *  I  M  L  L  Y  Y  F  F  L  Q  E  I  C  H  F  V  Y  L  F  E  L  M  L  *  R   </second_frame>
            <third_frame>   I  K  K  W  L  V  L  V  *  A  T  I  L  G  S  L  F  L  K  C  V  P  P  P  P  Y  R  S  K  I  H  K  *  S  D  P  I  P  P  A  C  P  S  T  V  *  K  K  F  S  P  F  T  R  L  A  F  P  N  P  T  R  T  *  S  S  L  S  L  T  P  L  L  L  L  V  T  L  F  G  M  L  *  S  L  K  Q  S  L  R :   Q  R  R  S  Q  Y  *  A  A  S  C  T  Q  V  F  *  L  M  I  V  W  N  G  H  *  A  L  F  F  P  T  V  C  K  I  L  H  F  W  Q  L  N  *  W  T  Y  S  L  M  *  *  C  T  I  G  A  S  N  A  L  F  D  L  I  Y  R :   H  V  K  I  E  I  L  H  V  C  H  T  V  L  L  F  C  T  L  R :   V  I  M  L  Y  K  H  I  E  L  H  I  R  Y  G  I  K  G  A  K  S  W  H  W  R  Y  K  V  E  L  V  R :   F  L  E  L  I  Y  I  Q  :  L  P  K  L  E  R  E  F  F  W  I  M  P  L  V  L  *  L  V  K  L  L  S  *  G  I  E  F  H  L  C  R :   A  *  P  W  E  V  L  G  K  R  L  V  I  G  I  P  K  *  V  K  V  H  *  L  E  L  V  Q  L  Y  L  E  I  *  K  *  G  K  V  Q  W  L  V  L  V  P  L  *  *  R  M  F  L  P  T   : V  W  *  Q  E  Y  Q  Q  R  *  L  V  M  *  M  I  K  I  H  L  *  L  *  S  M  :  M  P  A  R  S  S  L  N  K  *  P  F  A  A  R  K  Q  D  P  M  :  E  R  L  L  Q  R  T  M  A  Q  H  E  I  D  E  D  T  S  S  F  D  Y  *  P  P  I  H  F  N  V  *  K  *  F  *  Y  F  H  H  L  *  Y  Y  Y  R  I  S  K  N  R  K  N  K  A  P  L  *  R  L  I  I  I  Q  S  T  C  N  A  M  Y  V  C  P  F  K  L  C  Y  C  I  I  S  F  S  R  R  F  V  I  L  Y  I  C  L  N  *  C  Y  N  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0031D11.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43349" stop="43080"/>
                    <exon start="42236" stop="42039"/>
                    <exon start="41946" stop="41887"/>
                    <exon start="41440" stop="41345"/>
                    <exon start="41240" stop="41216"/>
                    <exon start="41039" stop="40945"/>
                    <exon start="39247" stop="39081"/>
                    <exon start="38983" stop="38910"/>
                    <exon start="38068" stop="38009"/>
                    <exon start="37768" stop="37734"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1077</number_coding_nucleotides>
                  <number_encoded_amino_acids>359</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NQKMACSCLSDDTWFALSQMRTTTTLQVEDPQIIGPNSPGMPEYCLEKVFPVYAVGVSEPDPNLIVSVANTASTLGDPIWDAVKLEAKLEAEKEPILSSFLYASILTHDCLERALSFVLSNRLQNPTLLATQLMDIFSDVIMHNRCIQCSIRLDLQACKDRDPSCLSYCSALLYLKGYHALQTHRVAHTLWNQGRKVLALALQSRVSEVFGVDIHPAAQIGEGILLDHATGVVIGETAVIGNRVSLMQGVTLGGTGKEIGDRHPKIGQGALIGASATILGNIEIGEGAMVGAGSLVMKDVPPHSMVTGIPAKVIGYVDDQDPSLTMKHDASKEFFKQVAIRCKEARSNGAVASKDDGST*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="43350" e_stop="43080"/>
            <exon e_start="42236" e_stop="42039"/>
            <exon e_start="41946" e_stop="41887"/>
            <exon e_start="41440" e_stop="41345"/>
            <exon e_start="41240" e_stop="41216"/>
            <exon e_start="41039" e_stop="40945"/>
            <exon e_start="39538" e_stop="39493"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.716" acc_prob="0.765" e_score="1.000"/>
          <exon-intron don_prob="0.518" acc_prob="0.714" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.947" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.869" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="43350" e_stop="43080" e_length="271"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.968">
            <gDNA_intron_boundary i_start="43079" i_stop="42237" i_length="843"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42236" e_stop="42039" e_length="198"/>
          </exon>
          <intron i_serial="2" don_prob="0.716" acc_prob="0.765">
            <gDNA_intron_boundary i_start="42038" i_stop="41947" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="41946" e_stop="41887" e_length="60"/>
          </exon>
          <intron i_serial="3" don_prob="0.518" acc_prob="0.714">
            <gDNA_intron_boundary i_start="41886" i_stop="41441" i_length="446"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="41440" e_stop="41345" e_length="96"/>
          </exon>
          <intron i_serial="4" don_prob="0.987" acc_prob="0.999">
            <gDNA_intron_boundary i_start="41344" i_stop="41241" i_length="104"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="41240" e_stop="41216" e_length="25"/>
          </exon>
          <intron i_serial="5" don_prob="0.990" acc_prob="0.947">
            <gDNA_intron_boundary i_start="41215" i_stop="41040" i_length="176"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="41039" e_stop="40945" e_length="95"/>
          </exon>
          <intron i_serial="6" don_prob="0.990" acc_prob="0.869">
            <gDNA_intron_boundary i_start="40944" i_stop="39539" i_length="1406"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="39538" e_stop="39493" e_length="46"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43350" stop="43080"/>
              <exon start="42236" stop="42039"/>
              <exon start="41946" stop="41887"/>
              <exon start="41440" stop="41390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213273" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43284" stop="43080"/>
              <exon start="42236" stop="42039"/>
              <exon start="41946" stop="41887"/>
              <exon start="41440" stop="41345"/>
              <exon start="41240" stop="41216"/>
              <exon start="41039" stop="40973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42154" stop="42039"/>
              <exon start="41946" stop="41887"/>
              <exon start="41440" stop="41345"/>
              <exon start="41240" stop="41216"/>
              <exon start="41039" stop="40945"/>
              <exon start="39538" stop="39493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303052" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATCAAAAAATGGCTTGTTCTTGTTTGAGCGACGATACTTGGTTCGCTCTTTCTCAAATGCGTACCACCACCACCTTACAGGTCGAAGATCCACAAATAATCGGACCCAATTCCCCCGGCATGCCCGAGTACTGTTTAGAAAAAGTTTTCCCCGTTTACGCGGTTGGCGTTTCCGAACCCGACCCGAACTTGATCGTCTCTGTCGCTAACACCGCTTCTACTCTTGGTGACCCTATTTGGGATGCTGTAAAGCTTGAAGCAAAGCTTGAG : GCAGAGAAGGAGCCAATATTAAGCAGCTTCTTGTACGCAAGTATTTTGACTCATGATTGTTTGGAACGGGCATTGAGCTTTGTTCTTTCCAACCGTCTGCAAAATCCTACACTTTTGGCAACTCAATTAATGGACATATTCTCTGATGTAATAATGCACAATCGGTGCATCCAATGCTCTATTCGACTTGATTTACAG : GCATGTAAAGATAGAGATCCTTCATGTTTGTCATACTGTTCTGCTCTTTTGTACCTTAAG : GGTTATCATGCTTTACAAACACATCGAGTTGCACATACGCTATGGAATCAAGGGCGCAAAGTCTTGGCATTGGCGTTACAAAGTCGAGTTAGTGAG : GTTTTTGGAGTTGATATACATCCAG : CTGCCCAAATTGGAGAGGGAATTCTTCTGGATCATGCCACTGGTGTTGTAATTGGTGAAACTGCTGTCATAGGGAATAGAGTTTCACTTATGCAG : GTACTGAGCACGTAATGAGTAGACAGTCTGCCACTGTGAATCTGTG</gDNA_template>
            <first_frame> K  S  K  N  G  L  F  L  F  E  R  R  Y  L  V  R  S  F  S  N  A  Y  H  H  H  L  T  G  R  R  S  T  N  N  R  T  Q  F  P  R  H  A  R  V  L  F  R  K  S  F  P  R  L  R  G  W  R  F  R  T  R  P  E  L  D  R  L  C  R  *  H  R  F  Y  S  W  *  P  Y  L  G  C  C  K  A  *  S  K  A  *   : G  R  E  G  A  N  I  K  Q  L  L  V  R  K  Y  F  D  S  *  L  F  G  T  G  I  E  L  C  S  F  Q  P  S  A  K  S  Y  T  F  G  N  S  I  N  G  H  I  L  *  C  N  N  A  Q  S  V  H  P  M  L  Y  S  T  *  F  T   : G  M  *  R  *  R  S  F  M  F  V  I  L  F  C  S  F  V  P  *   : G  L  S  C  F  T  N  T  S  S  C  T  Y  A  M  E  S  R  A  Q  S  L  G  I  G  V  T  K  S  S  *  *   : G  F  W  S  *  Y  T  S  S :   C  P  N  W  R  G  N  S  S  G  S  C  H  W  C  C  N  W  *  N  C  C  H  R  E  *  S  F  T  Y  A   : G  T  E  H  V  M  S  R  Q  S  A  T  V  N  L   </first_frame>
            <second_frame>  N  Q  K  M  A  C  S  C  L  S  D  D  T  W  F  A  L  S  Q  M  R  T  T  T  T  L  Q  V  E  D  P  Q  I  I  G  P  N  S  P  G  M  P  E  Y  C  L  E  K  V  F  P  V  Y  A  V  G  V  S  E  P  D  P  N  L  I  V  S  V  A  N  T  A  S  T  L  G  D  P  I  W  D  A  V  K  L  E  A  K  L  E  :  A  E  K  E  P  I  L  S  S  F  L  Y  A  S  I  L  T  H  D  C  L  E  R  A  L  S  F  V  L  S  N  R  L  Q  N  P  T  L  L  A  T  Q  L  M  D  I  F  S  D  V  I  M  H  N  R  C  I  Q  C  S  I  R  L  D  L  Q  :  A  C  K  D  R  D  P  S  C  L  S  Y  C  S  A  L  L  Y  L  K  :  G  Y  H  A  L  Q  T  H  R  V  A  H  T  L  W  N  Q  G  R  K  V  L  A  L  A  L  Q  S  R  V  S  E  :  V  F  G  V  D  I  H  P   : A  A  Q  I  G  E  G  I  L  L  D  H  A  T  G  V  V  I  G  E  T  A  V  I  G  N  R  V  S  L  M  Q  :  V  L  S  T  *  *  V  D  S  L  P  L  *  I  C  </second_frame>
            <third_frame>   I  K  K  W  L  V  L  V  *  A  T  I  L  G  S  L  F  L  K  C  V  P  P  P  P  Y  R  S  K  I  H  K  *  S  D  P  I  P  P  A  C  P  S  T  V  *  K  K  F  S  P  F  T  R  L  A  F  P  N  P  T  R  T  *  S  S  L  S  L  T  P  L  L  L  L  V  T  L  F  G  M  L  *  S  L  K  Q  S  L  R :   Q  R  R  S  Q  Y  *  A  A  S  C  T  Q  V  F  *  L  M  I  V  W  N  G  H  *  A  L  F  F  P  T  V  C  K  I  L  H  F  W  Q  L  N  *  W  T  Y  S  L  M  *  *  C  T  I  G  A  S  N  A  L  F  D  L  I  Y  R :   H  V  K  I  E  I  L  H  V  C  H  T  V  L  L  F  C  T  L  R :   V  I  M  L  Y  K  H  I  E  L  H  I  R  Y  G  I  K  G  A  K  S  W  H  W  R  Y  K  V  E  L  V  R :   F  L  E  L  I  Y  I  Q  :  L  P  K  L  E  R  E  F  F  W  I  M  P  L  V  L  *  L  V  K  L  L  S  *  G  I  E  F  H  L  C  R :   Y  *  A  R  N  E  *  T  V  C  H  C  E  S  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0031D11.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43349" stop="43080"/>
                    <exon start="42236" stop="42039"/>
                    <exon start="41946" stop="41887"/>
                    <exon start="41440" stop="41345"/>
                    <exon start="41240" stop="41216"/>
                    <exon start="41039" stop="40945"/>
                    <exon start="39538" stop="39524"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>756</number_coding_nucleotides>
                  <number_encoded_amino_acids>252</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NQKMACSCLSDDTWFALSQMRTTTTLQVEDPQIIGPNSPGMPEYCLEKVFPVYAVGVSEPDPNLIVSVANTASTLGDPIWDAVKLEAKLEAEKEPILSSFLYASILTHDCLERALSFVLSNRLQNPTLLATQLMDIFSDVIMHNRCIQCSIRLDLQACKDRDPSCLSYCSALLYLKGYHALQTHRVAHTLWNQGRKVLALALQSRVSEVFGVDIHPAAQIGEGILLDHATGVVIGETAVIGNRVSLMQVLST*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="43350" e_stop="43080"/>
            <exon e_start="42236" e_stop="42039"/>
            <exon e_start="41946" e_stop="41887"/>
            <exon e_start="41440" e_stop="41345"/>
            <exon e_start="41240" e_stop="41216"/>
            <exon e_start="41069" e_stop="40945"/>
            <exon e_start="39247" e_stop="39081"/>
            <exon e_start="38983" e_stop="38910"/>
            <exon e_start="38068" e_stop="38009"/>
            <exon e_start="37768" e_stop="37468"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.716" acc_prob="0.765" e_score="1.000"/>
          <exon-intron don_prob="0.518" acc_prob="0.714" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.999" e_score="0.990"/>
          <exon-intron don_prob="0.990" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="0.970"/>
          <exon-intron don_prob="0.996" acc_prob="0.996" e_score="0.976"/>
          <exon-intron don_prob="0.972" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.915" acc_prob="0.999" e_score="0.983"/>
          <exon-only e_score="0.870"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="43350" e_stop="43080" e_length="271"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.968">
            <gDNA_intron_boundary i_start="43079" i_stop="42237" i_length="843"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42236" e_stop="42039" e_length="198"/>
          </exon>
          <intron i_serial="2" don_prob="0.716" acc_prob="0.765">
            <gDNA_intron_boundary i_start="42038" i_stop="41947" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="41946" e_stop="41887" e_length="60"/>
          </exon>
          <intron i_serial="3" don_prob="0.518" acc_prob="0.714">
            <gDNA_intron_boundary i_start="41886" i_stop="41441" i_length="446"/>
          </intron>
          <exon e_serial="4" e_score="0.990">
            <gDNA_exon_boundary e_start="41440" e_stop="41345" e_length="96"/>
          </exon>
          <intron i_serial="4" don_prob="0.987" acc_prob="0.999">
            <gDNA_intron_boundary i_start="41344" i_stop="41241" i_length="104"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="41240" e_stop="41216" e_length="25"/>
          </exon>
          <intron i_serial="5" don_prob="0.990" acc_prob="0.000">
            <gDNA_intron_boundary i_start="41215" i_stop="41070" i_length="146"/>
          </intron>
          <exon e_serial="6" e_score="0.970">
            <gDNA_exon_boundary e_start="41069" e_stop="40945" e_length="125"/>
          </exon>
          <intron i_serial="6" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="40944" i_stop="39248" i_length="1697"/>
          </intron>
          <exon e_serial="7" e_score="0.976">
            <gDNA_exon_boundary e_start="39247" e_stop="39081" e_length="167"/>
          </exon>
          <intron i_serial="7" don_prob="0.996" acc_prob="0.996">
            <gDNA_intron_boundary i_start="39080" i_stop="38984" i_length="97"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="38983" e_stop="38910" e_length="74"/>
          </exon>
          <intron i_serial="8" don_prob="0.972" acc_prob="0.997">
            <gDNA_intron_boundary i_start="38909" i_stop="38069" i_length="841"/>
          </intron>
          <exon e_serial="9" e_score="0.983">
            <gDNA_exon_boundary e_start="38068" e_stop="38009" e_length="60"/>
          </exon>
          <intron i_serial="9" don_prob="0.915" acc_prob="0.999">
            <gDNA_intron_boundary i_start="38008" i_stop="37769" i_length="240"/>
          </intron>
          <exon e_serial="10" e_score="0.870">
            <gDNA_exon_boundary e_start="37768" e_stop="37468" e_length="301"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43350" stop="43080"/>
              <exon start="42236" stop="42039"/>
              <exon start="41946" stop="41887"/>
              <exon start="41440" stop="41390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213273" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43346" stop="43080"/>
              <exon start="42236" stop="42039"/>
              <exon start="41946" stop="41887"/>
              <exon start="41440" stop="41345"/>
              <exon start="41240" stop="41216"/>
              <exon start="41069" stop="40978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573927" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41011" stop="40945"/>
              <exon start="39247" stop="39081"/>
              <exon start="38983" stop="38910"/>
              <exon start="38068" stop="38009"/>
              <exon start="37768" stop="37468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574168" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATCAAAAAATGGCTTGTTCTTGTTTGAGCGACGATACTTGGTTCGCTCTTTCTCAAATGCGTACCACCACCACCTTACAGGTCGAAGATCCACAAATAATCGGACCCAATTCCCCCGGCATGCCCGAGTACTGTTTAGAAAAAGTTTTCCCCGTTTACGCGGTTGGCGTTTCCGAACCCGACCCGAACTTGATCGTCTCTGTCGCTAACACCGCTTCTACTCTTGGTGACCCTATTTGGGATGCTGTAAAGCTTGAAGCAAAGCTTGAG : GCAGAGAAGGAGCCAATATTAAGCAGCTTCTTGTACGCAAGTATTTTGACTCATGATTGTTTGGAACGGGCATTGAGCTTTGTTCTTTCCAACCGTCTGCAAAATCCTACACTTTTGGCAACTCAATTAATGGACATATTCTCTGATGTAATAATGCACAATCGGTGCATCCAATGCTCTATTCGACTTGATTTACAG : GCATGTAAAGATAGAGATCCTTCATGTTTGTCATACTGTTCTGCTCTTTTGTACCTTAAG : GGTTATCATGCTTTACAAACACATCGAGTTGCACATACGCTATGGAATCAAGGGCGCAAAGTCTTGGCATTGGCGTTACAAAGTCGAGTTAGTGAG : GTTTTTGGAGTTGATATACATCCAG : AAGTTATACCTGTGTTTGCCTATAAAACAGCTGCCCAAATTGGAGAGGGAATTCTTCTGGATCATGCCACTGGTGTTGTAATTGGTGAAACTGCTGTCATAGGGAATAGAGTTTCACTTATGCAG : GGCGTAACCTTGGGAGGTACTGGGAAAGAGATTGGTGATAGGCATCCCAAAATAGGTCAAGGTGCACTGATTGGAGCTAGTGCAACTATACTTGGAAATATAGAAATAGGGGAAGGTGCAATGGTTGGTGCTGGTTCCCTTGTGATGAAGGATGTTCCTCCCCACAG : TATGGTGACAGGAATACCAGCAAAGGTGATTGGTTATGTAGATGATCAAGATCCATCTTTAACTATGAAGCATG : ATGCCAGCAAGGAGTTCTTTAAACAAGTAGCCATTCGCTGCAAGGAAGCAAGATCCAATG : GAGCGGTTGCTTCAAAGGACGATGGCTCAACATGAGATTGATGAAGATACATCTTCGTTTGACTATTAACCCCCAATTCACTTCAATGTGTGAAAATGATTTTAGTATTTTCACCATCTTTAATACTACTATAGGATTTCTAAAAATAGAAAAAATAAAGCTCCTCTTTAAAGATTGATCATCATTCAATCGACGTGTAATGCCATGTATGTGTGCCCTTTTAAATTATGTTACTGTATTATTTCTTTCTCCAGGAGATTTGTCATTTTGTATATTTGTTTGAATTAATGCTATAACGAAA</gDNA_template>
            <first_frame> K  S  K  N  G  L  F  L  F  E  R  R  Y  L  V  R  S  F  S  N  A  Y  H  H  H  L  T  G  R  R  S  T  N  N  R  T  Q  F  P  R  H  A  R  V  L  F  R  K  S  F  P  R  L  R  G  W  R  F  R  T  R  P  E  L  D  R  L  C  R  *  H  R  F  Y  S  W  *  P  Y  L  G  C  C  K  A  *  S  K  A  *   : G  R  E  G  A  N  I  K  Q  L  L  V  R  K  Y  F  D  S  *  L  F  G  T  G  I  E  L  C  S  F  Q  P  S  A  K  S  Y  T  F  G  N  S  I  N  G  H  I  L  *  C  N  N  A  Q  S  V  H  P  M  L  Y  S  T  *  F  T   : G  M  *  R  *  R  S  F  M  F  V  I  L  F  C  S  F  V  P  *   : G  L  S  C  F  T  N  T  S  S  C  T  Y  A  M  E  S  R  A  Q  S  L  G  I  G  V  T  K  S  S  *  *   : G  F  W  S  *  Y  T  S  R :   S  Y  T  C  V  C  L  *  N  S  C  P  N  W  R  G  N  S  S  G  S  C  H  W  C  C  N  W  *  N  C  C  H  R  E  *  S  F  T  Y  A   : G  R  N  L  G  R  Y  W  E  R  D  W  *  *  A  S  Q  N  R  S  R  C  T  D  W  S  *  C  N  Y  T  W  K  Y  R  N  R  G  R  C  N  G  W  C  W  F  P  C  D  E  G  C  S  S  P  Q  :  Y  G  D  R  N  T  S  K  G  D  W  L  C  R  *  S  R  S  I  F  N  Y  E  A  * :   C  Q  Q  G  V  L  *  T  S  S  H  S  L  Q  G  S  K  I  Q  W :   S  G  C  F  K  G  R  W  L  N  M  R  L  M  K  I  H  L  R  L  T  I  N  P  Q  F  T  S  M  C  E  N  D  F  S  I  F  T  I  F  N  T  T  I  G  F  L  K  I  E  K  I  K  L  L  F  K  D  *  S  S  F  N  R  R  V  M  P  C  M  C  A  L  L  N  Y  V  T  V  L  F  L  S  P  G  D  L  S  F  C  I  F  V  *  I  N  A  I  T  K </first_frame>
            <second_frame>  N  Q  K  M  A  C  S  C  L  S  D  D  T  W  F  A  L  S  Q  M  R  T  T  T  T  L  Q  V  E  D  P  Q  I  I  G  P  N  S  P  G  M  P  E  Y  C  L  E  K  V  F  P  V  Y  A  V  G  V  S  E  P  D  P  N  L  I  V  S  V  A  N  T  A  S  T  L  G  D  P  I  W  D  A  V  K  L  E  A  K  L  E  :  A  E  K  E  P  I  L  S  S  F  L  Y  A  S  I  L  T  H  D  C  L  E  R  A  L  S  F  V  L  S  N  R  L  Q  N  P  T  L  L  A  T  Q  L  M  D  I  F  S  D  V  I  M  H  N  R  C  I  Q  C  S  I  R  L  D  L  Q  :  A  C  K  D  R  D  P  S  C  L  S  Y  C  S  A  L  L  Y  L  K  :  G  Y  H  A  L  Q  T  H  R  V  A  H  T  L  W  N  Q  G  R  K  V  L  A  L  A  L  Q  S  R  V  S  E  :  V  F  G  V  D  I  H  P   : E  V  I  P  V  F  A  Y  K  T  A  A  Q  I  G  E  G  I  L  L  D  H  A  T  G  V  V  I  G  E  T  A  V  I  G  N  R  V  S  L  M  Q  :  G  V  T  L  G  G  T  G  K  E  I  G  D  R  H  P  K  I  G  Q  G  A  L  I  G  A  S  A  T  I  L  G  N  I  E  I  G  E  G  A  M  V  G  A  G  S  L  V  M  K  D  V  P  P  H  S :   M  V  T  G  I  P  A  K  V  I  G  Y  V  D  D  Q  D  P  S  L  T  M  K  H   : D  A  S  K  E  F  F  K  Q  V  A  I  R  C  K  E  A  R  S  N   : G  A  V  A  S  K  D  D  G  S  T  *  D  *  *  R  Y  I  F  V  *  L  L  T  P  N  S  L  Q  C  V  K  M  I  L  V  F  S  P  S  L  I  L  L  *  D  F  *  K  *  K  K  *  S  S  S  L  K  I  D  H  H  S  I  D  V  *  C  H  V  C  V  P  F  *  I  M  L  L  Y  Y  F  F  L  Q  E  I  C  H  F  V  Y  L  F  E  L  M  L  *  R   </second_frame>
            <third_frame>   I  K  K  W  L  V  L  V  *  A  T  I  L  G  S  L  F  L  K  C  V  P  P  P  P  Y  R  S  K  I  H  K  *  S  D  P  I  P  P  A  C  P  S  T  V  *  K  K  F  S  P  F  T  R  L  A  F  P  N  P  T  R  T  *  S  S  L  S  L  T  P  L  L  L  L  V  T  L  F  G  M  L  *  S  L  K  Q  S  L  R :   Q  R  R  S  Q  Y  *  A  A  S  C  T  Q  V  F  *  L  M  I  V  W  N  G  H  *  A  L  F  F  P  T  V  C  K  I  L  H  F  W  Q  L  N  *  W  T  Y  S  L  M  *  *  C  T  I  G  A  S  N  A  L  F  D  L  I  Y  R :   H  V  K  I  E  I  L  H  V  C  H  T  V  L  L  F  C  T  L  R :   V  I  M  L  Y  K  H  I  E  L  H  I  R  Y  G  I  K  G  A  K  S  W  H  W  R  Y  K  V  E  L  V  R :   F  L  E  L  I  Y  I  Q  :  K  L  Y  L  C  L  P  I  K  Q  L  P  K  L  E  R  E  F  F  W  I  M  P  L  V  L  *  L  V  K  L  L  S  *  G  I  E  F  H  L  C  R :   A  *  P  W  E  V  L  G  K  R  L  V  I  G  I  P  K  *  V  K  V  H  *  L  E  L  V  Q  L  Y  L  E  I  *  K  *  G  K  V  Q  W  L  V  L  V  P  L  *  *  R  M  F  L  P  T   : V  W  *  Q  E  Y  Q  Q  R  *  L  V  M  *  M  I  K  I  H  L  *  L  *  S  M  :  M  P  A  R  S  S  L  N  K  *  P  F  A  A  R  K  Q  D  P  M  :  E  R  L  L  Q  R  T  M  A  Q  H  E  I  D  E  D  T  S  S  F  D  Y  *  P  P  I  H  F  N  V  *  K  *  F  *  Y  F  H  H  L  *  Y  Y  Y  R  I  S  K  N  R  K  N  K  A  P  L  *  R  L  I  I  I  Q  S  T  C  N  A  M  Y  V  C  P  F  K  L  C  Y  C  I  I  S  F  S  R  R  F  V  I  L  Y  I  C  L  N  *  C  Y  N  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0031D11.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43349" stop="43080"/>
                    <exon start="42236" stop="42039"/>
                    <exon start="41946" stop="41887"/>
                    <exon start="41440" stop="41345"/>
                    <exon start="41240" stop="41216"/>
                    <exon start="41069" stop="40945"/>
                    <exon start="39247" stop="39081"/>
                    <exon start="38983" stop="38910"/>
                    <exon start="38068" stop="38009"/>
                    <exon start="37768" stop="37734"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1107</number_coding_nucleotides>
                  <number_encoded_amino_acids>369</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NQKMACSCLSDDTWFALSQMRTTTTLQVEDPQIIGPNSPGMPEYCLEKVFPVYAVGVSEPDPNLIVSVANTASTLGDPIWDAVKLEAKLEAEKEPILSSFLYASILTHDCLERALSFVLSNRLQNPTLLATQLMDIFSDVIMHNRCIQCSIRLDLQACKDRDPSCLSYCSALLYLKGYHALQTHRVAHTLWNQGRKVLALALQSRVSEVFGVDIHPEVIPVFAYKTAAQIGEGILLDHATGVVIGETAVIGNRVSLMQGVTLGGTGKEIGDRHPKIGQGALIGASATILGNIEIGEGAMVGAGSLVMKDVPPHSMVTGIPAKVIGYVDDQDPSLTMKHDASKEFFKQVAIRCKEARSNGAVASKDDGST*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="54932" PGL_stop="60679"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54932" e_stop="55597"/>
            <exon e_start="56764" e_stop="57003"/>
            <exon e_start="58415" e_stop="58493"/>
            <exon e_start="60250" e_stop="60679"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.947" e_score="1.000"/>
          <exon-intron don_prob="0.903" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.978" e_score="1.000"/>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="54932" e_stop="55597" e_length="666"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.947">
            <gDNA_intron_boundary i_start="55598" i_stop="56763" i_length="1166"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56764" e_stop="57003" e_length="240"/>
          </exon>
          <intron i_serial="2" don_prob="0.903" acc_prob="0.963">
            <gDNA_intron_boundary i_start="57004" i_stop="58414" i_length="1411"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="58415" e_stop="58493" e_length="79"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.978">
            <gDNA_intron_boundary i_start="58494" i_stop="60249" i_length="1756"/>
          </intron>
          <exon e_serial="4" e_score="0.977">
            <gDNA_exon_boundary e_start="60250" e_stop="60679" e_length="430"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54932" stop="55597"/>
              <exon start="56764" stop="56902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553923" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54986" stop="55597"/>
              <exon start="56764" stop="56847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339343" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55091" stop="55597"/>
              <exon start="56764" stop="56982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340334" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55408" stop="55597"/>
              <exon start="56764" stop="57003"/>
              <exon start="58415" stop="58493"/>
              <exon start="60250" stop="60609"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708691" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56986" stop="57003"/>
              <exon start="58415" stop="58493"/>
              <exon start="60250" stop="60679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227190" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGTACATGAGGTGGTGTTTGGTCAGATGGACCGGCTATTCTTCAGCGGTTCACGCAAAATGTGGCGCGCATTGCTACCGCTCTCTCCACTTCCTTTTTTCCTTCGACTTTCTTCACTGCCCTTTCATGGCGACTTAAAGTCATTCGCAATCTGAAGAATTCAAGACAAATCAAAATCAAATAGCTATGGCTCGGAAATCCTTTCCGATCCTAAAACAACTCATCCAACAATCGACCAATCGTTGTTTTACCTCTACCGTCTCGCCGCGAGCCGTCACGCTGATTCCAGGCGATGGCGTTGGTCCACTGGTAACCGATTCAGTCGAACAGGTGATGAAGGCGATGAAGGCACCTGTTTACTTTGAGCGATACGAAGTGCGTGGTGATATGAAGTGTATGCCGGAGGAAGTAATTGATTCGATTAAGAAGAATAAGGTTTGTCTGAAAGGAGGGCTAAGGACTCCGGTTGGCGGAGGTGTTAGTTCGCTAAATGTGCAAATGAGGAAAGAGCTTGATTTGTACGCTTCCATTGTGCATTGTTTTACTCTGCCAGGGTTGCCTACGCGGCATGAGGATGTGGATATTGTTGTGATTAGGGAGAATACTGAGGGAGAGTATGCTGGCCTTGAGCATGAGGTTGTTCCTGGTGTCGTTGAGAGCCTTAAG : GTGATAACAAAATATTGCTCAGAACGAATAGCAAAATTTGCGTTTGAGTATGCTCATGTGAACAAAAGAAAGAAGGTCACAGCTGTGCACAAAGCCAACATTATGAAACTTGCAGATGGTCTATTCTTAGAATCCTGTAGGGAAGTTGCAGCTAAATATCCAGAAATACAGTATGAGGAGATTATTGTGGATAATTGCTGCATGCAACTTGTCTCAAGGCCAGAGCAATTTGATGTCATG : GTGACTCCCAACCTCTATGGAAATTTGATTGCAAATACGGCTGCTGGCATAGCTGGTGGCACAGGAGTCATGCCAGGAG : GTAATGTTGGCGCTGATCAAGCAGTTTTTGAGCAAGGTGCTTCCGCTGGGAATGTCGGCAATGAAAAGATATTGAAGCTTAAGAGAGCAAATCCAGTGGCGCTTCTTCTGTCGTCAGCAATGATGCTGAGACATCTTGAATTTCCGTCATATGCTGATCGTTTAGAAACTGCTGTAAGACATGTAATAGAAGAGGGAAAATTCAGGACAAAGGATGTTGGAGGGGATAGCTCTACTCAAGAAGTTGTTGATGCAATTATAGCTGCTTTAGACTAATCGGAATTGACAGTCGTCAAGTTTTTAGGAGAATTATTCACTGTCCAGAGATCTACTTGGCCTATTTTTTGCACAGCTGCAATTTTGTTTTAACTTTCTGAGAATATTTGCTGCTACAATTCTAAATTATCTTTTTTTCATTGGTTAATAATTCA</gDNA_template>
            <first_frame> E  Y  M  R  W  C  L  V  R  W  T  G  Y  S  S  A  V  H  A  K  C  G  A  H  C  Y  R  S  L  H  F  L  F  S  F  D  F  L  H  C  P  F  M  A  T  *  S  H  S  Q  S  E  E  F  K  T  N  Q  N  Q  I  A  M  A  R  K  S  F  P  I  L  K  Q  L  I  Q  Q  S  T  N  R  C  F  T  S  T  V  S  P  R  A  V  T  L  I  P  G  D  G  V  G  P  L  V  T  D  S  V  E  Q  V  M  K  A  M  K  A  P  V  Y  F  E  R  Y  E  V  R  G  D  M  K  C  M  P  E  E  V  I  D  S  I  K  K  N  K  V  C  L  K  G  G  L  R  T  P  V  G  G  G  V  S  S  L  N  V  Q  M  R  K  E  L  D  L  Y  A  S  I  V  H  C  F  T  L  P  G  L  P  T  R  H  E  D  V  D  I  V  V  I  R  E  N  T  E  G  E  Y  A  G  L  E  H  E  V  V  P  G  V  V  E  S  L  K  :  V  I  T  K  Y  C  S  E  R  I  A  K  F  A  F  E  Y  A  H  V  N  K  R  K  K  V  T  A  V  H  K  A  N  I  M  K  L  A  D  G  L  F  L  E  S  C  R  E  V  A  A  K  Y  P  E  I  Q  Y  E  E  I  I  V  D  N  C  C  M  Q  L  V  S  R  P  E  Q  F  D  V  M  :  V  T  P  N  L  Y  G  N  L  I  A  N  T  A  A  G  I  A  G  G  T  G  V  M  P  G   : G  N  V  G  A  D  Q  A  V  F  E  Q  G  A  S  A  G  N  V  G  N  E  K  I  L  K  L  K  R  A  N  P  V  A  L  L  L  S  S  A  M  M  L  R  H  L  E  F  P  S  Y  A  D  R  L  E  T  A  V  R  H  V  I  E  E  G  K  F  R  T  K  D  V  G  G  D  S  S  T  Q  E  V  V  D  A  I  I  A  A  L  D  *  S  E  L  T  V  V  K  F  L  G  E  L  F  T  V  Q  R  S  T  W  P  I  F  C  T  A  A  I  L  F  *  L  S  E  N  I  C  C  Y  N  S  K  L  S  F  F  H  W  L  I  I   </first_frame>
            <second_frame>  S  T  *  G  G  V  W  S  D  G  P  A  I  L  Q  R  F  T  Q  N  V  A  R  I  A  T  A  L  S  T  S  F  F  P  S  T  F  F  T  A  L  S  W  R  L  K  V  I  R  N  L  K  N  S  R  Q  I  K  I  K  *  L  W  L  G  N  P  F  R  S  *  N  N  S  S  N  N  R  P  I  V  V  L  P  L  P  S  R  R  E  P  S  R  *  F  Q  A  M  A  L  V  H  W  *  P  I  Q  S  N  R  *  *  R  R  *  R  H  L  F  T  L  S  D  T  K  C  V  V  I  *  S  V  C  R  R  K  *  L  I  R  L  R  R  I  R  F  V  *  K  E  G  *  G  L  R  L  A  E  V  L  V  R  *  M  C  K  *  G  K  S  L  I  C  T  L  P  L  C  I  V  L  L  C  Q  G  C  L  R  G  M  R  M  W  I  L  L  *  L  G  R  I  L  R  E  S  M  L  A  L  S  M  R  L  F  L  V  S  L  R  A  L  R :   *  *  Q  N  I  A  Q  N  E  *  Q  N  L  R  L  S  M  L  M  *  T  K  E  R  R  S  Q  L  C  T  K  P  T  L  *  N  L  Q  M  V  Y  S  *  N  P  V  G  K  L  Q  L  N  I  Q  K  Y  S  M  R  R  L  L  W  I  I  A  A  C  N  L  S  Q  G  Q  S  N  L  M  S  W :   *  L  P  T  S  M  E  I  *  L  Q  I  R  L  L  A  *  L  V  A  Q  E  S  C  Q  E  :  V  M  L  A  L  I  K  Q  F  L  S  K  V  L  P  L  G  M  S  A  M  K  R  Y  *  S  L  R  E  Q  I  Q  W  R  F  F  C  R  Q  Q  *  C  *  D  I  L  N  F  R  H  M  L  I  V  *  K  L  L  *  D  M  *  *  K  R  E  N  S  G  Q  R  M  L  E  G  I  A  L  L  K  K  L  L  M  Q  L  *  L  L  *  T  N  R  N  *  Q  S  S  S  F  *  E  N  Y  S  L  S  R  D  L  L  G  L  F  F  A  Q  L  Q  F  C  F  N  F  L  R  I  F  A  A  T  I  L  N  Y  L  F  F  I  G  *  *  F  </second_frame>
            <third_frame>   V  H  E  V  V  F  G  Q  M  D  R  L  F  F  S  G  S  R  K  M  W  R  A  L  L  P  L  S  P  L  P  F  F  L  R  L  S  S  L  P  F  H  G  D  L  K  S  F  A  I  *  R  I  Q  D  K  S  K  S  N  S  Y  G  S  E  I  L  S  D  P  K  T  T  H  P  T  I  D  Q  S  L  F  Y  L  Y  R  L  A  A  S  R  H  A  D  S  R  R  W  R  W  S  T  G  N  R  F  S  R  T  G  D  E  G  D  E  G  T  C  L  L  *  A  I  R  S  A  W  *  Y  E  V  Y  A  G  G  S  N  *  F  D  *  E  E  *  G  L  S  E  R  R  A  K  D  S  G  W  R  R  C  *  F  A  K  C  A  N  E  E  R  A  *  F  V  R  F  H  C  A  L  F  Y  S  A  R  V  A  Y  A  A  *  G  C  G  Y  C  C  D  *  G  E  Y  *  G  R  V  C  W  P  *  A  *  G  C  S  W  C  R  *  E  P  *   : G  D  N  K  I  L  L  R  T  N  S  K  I  C  V  *  V  C  S  C  E  Q  K  K  E  G  H  S  C  A  Q  S  Q  H  Y  E  T  C  R  W  S  I  L  R  I  L  *  G  S  C  S  *  I  S  R  N  T  V  *  G  D  Y  C  G  *  L  L  H  A  T  C  L  K  A  R  A  I  *  C  H   : G  D  S  Q  P  L  W  K  F  D  C  K  Y  G  C  W  H  S  W  W  H  R  S  H  A  R  R :   *  C  W  R  *  S  S  S  F  *  A  R  C  F  R  W  E  C  R  Q  *  K  D  I  E  A  *  E  S  K  S  S  G  A  S  S  V  V  S  N  D  A  E  T  S  *  I  S  V  I  C  *  S  F  R  N  C  C  K  T  C  N  R  R  G  K  I  Q  D  K  G  C  W  R  G  *  L  Y  S  R  S  C  *  C  N  Y  S  C  F  R  L  I  G  I  D  S  R  Q  V  F  R  R  I  I  H  C  P  E  I  Y  L  A  Y  F  L  H  S  C  N  F  V  L  T  F  *  E  Y  L  L  L  Q  F  *  I  I  F  F  S  L  V  N  N  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0031D11.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55070" stop="55597"/>
                    <exon start="56764" stop="57003"/>
                    <exon start="58415" stop="58493"/>
                    <exon start="60250" stop="60524"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1119</number_coding_nucleotides>
                  <number_encoded_amino_acids>373</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SHSQSEEFKTNQNQIAMARKSFPILKQLIQQSTNRCFTSTVSPRAVTLIPGDGVGPLVTDSVEQVMKAMKAPVYFERYEVRGDMKCMPEEVIDSIKKNKVCLKGGLRTPVGGGVSSLNVQMRKELDLYASIVHCFTLPGLPTRHEDVDIVVIRENTEGEYAGLEHEVVPGVVESLKVITKYCSERIAKFAFEYAHVNKRKKVTAVHKANIMKLADGLFLESCREVAAKYPEIQYEEIIVDNCCMQLVSRPEQFDVMVTPNLYGNLIANTAAGIAGGTGVMPGGNVGADQAVFEQGASAGNVGNEKILKLKRANPVALLLSSAMMLRHLEFPSYADRLETAVRHVIEEGKFRTKDVGGDSSTQEVVDAIIAALD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="63686" PGL_stop="64343"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63686" e_stop="64343"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.959"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.959">
            <gDNA_exon_boundary e_start="63686" e_stop="64343" e_length="658"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63686" stop="64343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63686" stop="64342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486347" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTGTATCAGAGTCGGATCCAATCTTGTCGATGTAGTGAATTTAAATGGTTTACTCTGTCATTTTCATAGATTTTGAAATTGTTTGTGTAGGTTGCAACATTAGCTCGAAATGTATACGCAATGCAAGAGCTACATTTTGCTGTACCAATGGCTGGAGGAGTTATTTGTACATTGAACACCCGTCATGATTCAGCTATGTTATCAGTACTGCTGAAACATTCTGAAGCAAAGGTAATATTTGTGGATCAACACATGCTGCAACTTGCTCAAGGAGCATTAGATATTCTTGTCAATGAAAAAGTAACACCACCTCTTCTTGTTGTGATCTCTGAATCTGAAAATTCTTATTCTACTATTGTTAATTCGAATTCTTACGAATATGAGAGCCTCCTGGAAAGTGGTAATAGCGAATTCTCTGTAAGGTGGCCAACAAGTGAATTAGATCCTATCAGTGTTAACTATACTTCTGGAACAACGTCGCGACCCAAAGGGGTTGTTTACAGTCACAGGGGTGCATATCTCAATGCCATTGCTACCTTTCTGCTTCATGAGATGAGTTCATGGCCTGTTTACCTTTGGACCGTCCCAACGTTTCACTGCAACGGATGGTGCCTGACTTGGGGTCTAGCAGCACTTGGTGGCACCAGCATTTGCCTC</gDNA_template>
            <first_frame> S  V  S  E  S  D  P  I  L  S  M  *  *  I  *  M  V  Y  S  V  I  F  I  D  F  E  I  V  C  V  G  C  N  I  S  S  K  C  I  R  N  A  R  A  T  F  C  C  T  N  G  W  R  S  Y  L  Y  I  E  H  P  S  *  F  S  Y  V  I  S  T  A  E  T  F  *  S  K  G  N  I  C  G  S  T  H  A  A  T  C  S  R  S  I  R  Y  S  C  Q  *  K  S  N  T  T  S  S  C  C  D  L  *  I  *  K  F  L  F  Y  Y  C  *  F  E  F  L  R  I  *  E  P  P  G  K  W  *  *  R  I  L  C  K  V  A  N  K  *  I  R  S  Y  Q  C  *  L  Y  F  W  N  N  V  A  T  Q  R  G  C  L  Q  S  Q  G  C  I  S  Q  C  H  C  Y  L  S  A  S  *  D  E  F  M  A  C  L  P  L  D  R  P  N  V  S  L  Q  R  M  V  P  D  L  G  S  S  S  T  W  W  H  Q  H  L  P  </first_frame>
            <second_frame>  L  Y  Q  S  R  I  Q  S  C  R  C  S  E  F  K  W  F  T  L  S  F  S  *  I  L  K  L  F  V  *  V  A  T  L  A  R  N  V  Y  A  M  Q  E  L  H  F  A  V  P  M  A  G  G  V  I  C  T  L  N  T  R  H  D  S  A  M  L  S  V  L  L  K  H  S  E  A  K  V  I  F  V  D  Q  H  M  L  Q  L  A  Q  G  A  L  D  I  L  V  N  E  K  V  T  P  P  L  L  V  V  I  S  E  S  E  N  S  Y  S  T  I  V  N  S  N  S  Y  E  Y  E  S  L  L  E  S  G  N  S  E  F  S  V  R  W  P  T  S  E  L  D  P  I  S  V  N  Y  T  S  G  T  T  S  R  P  K  G  V  V  Y  S  H  R  G  A  Y  L  N  A  I  A  T  F  L  L  H  E  M  S  S  W  P  V  Y  L  W  T  V  P  T  F  H  C  N  G  W  C  L  T  W  G  L  A  A  L  G  G  T  S  I  C  L </second_frame>
            <third_frame>   C  I  R  V  G  S  N  L  V  D  V  V  N  L  N  G  L  L  C  H  F  H  R  F  *  N  C  L  C  R  L  Q  H  *  L  E  M  Y  T  Q  C  K  S  Y  I  L  L  Y  Q  W  L  E  E  L  F  V  H  *  T  P  V  M  I  Q  L  C  Y  Q  Y  C  *  N  I  L  K  Q  R  *  Y  L  W  I  N  T  C  C  N  L  L  K  E  H  *  I  F  L  S  M  K  K  *  H  H  L  F  L  L  *  S  L  N  L  K  I  L  I  L  L  L  L  I  R  I  L  T  N  M  R  A  S  W  K  V  V  I  A  N  S  L  *  G  G  Q  Q  V  N  *  I  L  S  V  L  T  I  L  L  E  Q  R  R  D  P  K  G  L  F  T  V  T  G  V  H  I  S  M  P  L  L  P  F  C  F  M  R  *  V  H  G  L  F  T  F  G  P  S  Q  R  F  T  A  T  D  G  A  *  L  G  V  *  Q  H  L  V  A  P  A  F  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0031D11.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63777" stop="64343"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>567</number_coding_nucleotides>
                  <number_encoded_amino_acids>189</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VATLARNVYAMQELHFAVPMAGGVICTLNTRHDSAMLSVLLKHSEAKVIFVDQHMLQLAQGALDILVNEKVTPPLLVVISESENSYSTIVNSNSYEYESLLESGNSEFSVRWPTSELDPISVNYTSGTTSRPKGVVYSHRGAYLNAIATFLLHEMSSWPVYLWTVPTFHCNGWCLTWGLAALGGTSICL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="64546" PGL_stop="65392"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64546" e_stop="65392"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="64546" e_stop="65392" e_length="847"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64546" stop="65392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555097" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGTACATCACTTATATGGACTAACAGAGACATATGGTCCAGGTACATATAATTTGTGGAGGCCTGAGTGGGATTCTTTACCACCAAACGAAAAGTACAAACTGAAAGCAAGACAAGGGGTGCAACATCTTTGTTCAGAGGCAGTGGATGTGATGGACCCTCTTACAATGGAGAAAGTACCAGAAGATGGTAAAACAATAGGTGAAATTATGTTTAGAGGGAATACAGTAATGAGTGAATATCTGAAAGATGAAGAAGCAACAAAAGAAGCTTTTAAAGGTGGATGGTTTCATAGTGGTGATTTGGCTGTGAAACATCCAGACGGATACATAGAAGTTAAGGACAGATTGAAAGATATCGTAATCTCTGGTGGAGAAAACATAAGCACAATAGAGGTGGAAAGAGTTTTGTATAGTCATCCAGCAGTTTTTGAAACAGCAGTGGTTGCGCGACCAGATAATCACTGGGGGCAAACACCTTGTGCATTTGTGAAGTTGAAGGATGGTTCAAATGTTAGTGAGCAAGAAATTATCAACTTCTGCAGGGATAACTTGCCTCATTACATGGCACCTCGAACAGTCATATTTCAACATCTCCCTAAAACTTCAACAGGCAAAATACAAAAATTCATTCTAAGAGAGAAAGCCAGAGCCTTGGGAAGTCTTTGCTGAAGGAAATCCGTTTTTCTTGCTGTCCGATTCTCTTTCTTCTAATTTTCTACAACTGAAAGACTTCTATCTATGCTGTAATCTGTTTTTCTTACCTTTTAAAGATTGAAGTCTCCTCAAAAGGTGTATGCTAATGATCTCTATGTTGTACAAGCTGGACATGGTGTATCTCTTTGCTA</gDNA_template>
            <first_frame> E  Y  I  T  Y  M  D  *  Q  R  H  M  V  Q  V  H  I  I  C  G  G  L  S  G  I  L  Y  H  Q  T  K  S  T  N  *  K  Q  D  K  G  C  N  I  F  V  Q  R  Q  W  M  *  W  T  L  L  Q  W  R  K  Y  Q  K  M  V  K  Q  *  V  K  L  C  L  E  G  I  Q  *  *  V  N  I  *  K  M  K  K  Q  Q  K  K  L  L  K  V  D  G  F  I  V  V  I  W  L  *  N  I  Q  T  D  T  *  K  L  R  T  D  *  K  I  S  *  S  L  V  E  K  T  *  A  Q  *  R  W  K  E  F  C  I  V  I  Q  Q  F  L  K  Q  Q  W  L  R  D  Q  I  I  T  G  G  K  H  L  V  H  L  *  S  *  R  M  V  Q  M  L  V  S  K  K  L  S  T  S  A  G  I  T  C  L  I  T  W  H  L  E  Q  S  Y  F  N  I  S  L  K  L  Q  Q  A  K  Y  K  N  S  F  *  E  R  K  P  E  P  W  E  V  F  A  E  G  N  P  F  F  L  L  S  D  S  L  S  S  N  F  L  Q  L  K  D  F  Y  L  C  C  N  L  F  F  L  P  F  K  D  *  S  L  L  K  R  C  M  L  M  I  S  M  L  Y  K  L  D  M  V  Y  L  F  A  </first_frame>
            <second_frame>  S  T  S  L  I  W  T  N  R  D  I  W  S  R  Y  I  *  F  V  E  A  *  V  G  F  F  T  T  K  R  K  V  Q  T  E  S  K  T  R  G  A  T  S  L  F  R  G  S  G  C  D  G  P  S  Y  N  G  E  S  T  R  R  W  *  N  N  R  *  N  Y  V  *  R  E  Y  S  N  E  *  I  S  E  R  *  R  S  N  K  R  S  F  *  R  W  M  V  S  *  W  *  F  G  C  E  T  S  R  R  I  H  R  S  *  G  Q  I  E  R  Y  R  N  L  W  W  R  K  H  K  H  N  R  G  G  K  S  F  V  *  S  S  S  S  F  *  N  S  S  G  C  A  T  R  *  S  L  G  A  N  T  L  C  I  C  E  V  E  G  W  F  K  C  *  *  A  R  N  Y  Q  L  L  Q  G  *  L  A  S  L  H  G  T  S  N  S  H  I  S  T  S  P  *  N  F  N  R  Q  N  T  K  I  H  S  K  R  E  S  Q  S  L  G  K  S  L  L  K  E  I  R  F  S  C  C  P  I  L  F  L  L  I  F  Y  N  *  K  T  S  I  Y  A  V  I  C  F  S  Y  L  L  K  I  E  V  S  S  K  G  V  C  *  *  S  L  C  C  T  S  W  T  W  C  I  S  L  L </second_frame>
            <third_frame>   V  H  H  L  Y  G  L  T  E  T  Y  G  P  G  T  Y  N  L  W  R  P  E  W  D  S  L  P  P  N  E  K  Y  K  L  K  A  R  Q  G  V  Q  H  L  C  S  E  A  V  D  V  M  D  P  L  T  M  E  K  V  P  E  D  G  K  T  I  G  E  I  M  F  R  G  N  T  V  M  S  E  Y  L  K  D  E  E  A  T  K  E  A  F  K  G  G  W  F  H  S  G  D  L  A  V  K  H  P  D  G  Y  I  E  V  K  D  R  L  K  D  I  V  I  S  G  G  E  N  I  S  T  I  E  V  E  R  V  L  Y  S  H  P  A  V  F  E  T  A  V  V  A  R  P  D  N  H  W  G  Q  T  P  C  A  F  V  K  L  K  D  G  S  N  V  S  E  Q  E  I  I  N  F  C  R  D  N  L  P  H  Y  M  A  P  R  T  V  I  F  Q  H  L  P  K  T  S  T  G  K  I  Q  K  F  I  L  R  E  K  A  R  A  L  G  S  L  C  *  R  K  S  V  F  L  A  V  R  F  S  F  F  *  F  S  T  T  E  R  L  L  S  M  L  *  S  V  F  L  T  F  *  R  L  K  S  P  Q  K  V  Y  A  N  D  L  Y  V  V  Q  A  G  H  G  V  S  L  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0031D11.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64548" stop="65216"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>666</number_coding_nucleotides>
                  <number_encoded_amino_acids>222</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VHHLYGLTETYGPGTYNLWRPEWDSLPPNEKYKLKARQGVQHLCSEAVDVMDPLTMEKVPEDGKTIGEIMFRGNTVMSEYLKDEEATKEAFKGGWFHSGDLAVKHPDGYIEVKDRLKDIVISGGENISTIEVERVLYSHPAVFETAVVARPDNHWGQTPCAFVKLKDGSNVSEQEIINFCRDNLPHYMAPRTVIFQHLPKTSTGKIQKFILREKARALGSLC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="70759" PGL_stop="71513"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70759" e_stop="71103"/>
            <exon e_start="71276" e_stop="71432"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.929" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="70759" e_stop="71103" e_length="345"/>
          </exon>
          <intron i_serial="1" don_prob="0.929" acc_prob="1.000">
            <gDNA_intron_boundary i_start="71104" i_stop="71275" i_length="172"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="71276" e_stop="71432" e_length="157"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70759" stop="71103"/>
              <exon start="71276" stop="71432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307495" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGAATCCTTTTTTCAATATTTCAAGATTGAATGGGTTGTTACATGCTCTAAACAGAGTTCGAGTTCACCCCATTTTGAGTCAGAGGTCTCGTTATTTGTCCCAAATTATTCATGAGAATGTTGAAACTCACCCATGGGAATCCATGGAGGGACTAATGAGGTGTTCAGCTAATTATTTCCCTTTAACACCCATTAGTTTCTTGGACAGAGCTGCTAAGGTTTTTAGAGACAGGACTTCTGTTGTGTATGGTTCTTCTGTTAAATTCACTTGGGAAGAGACTCATAATAGATGTCTAAAGATGGCTTCTGCTCTGTCTCAGTTGGGTATTTCTCGTGGTGATGTT : GTTGCAACGCTGGCTCCTAATGTACCCGCAGTGCAAGAGTTGCATTTTGCGGTTCCAATGGCAGGAGCAGTGCTTTGTACGTTGAATACACGTCATGATTCAGCTATGGTATCTGTTCTCCTGAGGCATTCAGAAGCTAAGATCATTTTCGTTGACC</gDNA_template>
            <first_frame> M  N  P  F  F  N  I  S  R  L  N  G  L  L  H  A  L  N  R  V  R  V  H  P  I  L  S  Q  R  S  R  Y  L  S  Q  I  I  H  E  N  V  E  T  H  P  W  E  S  M  E  G  L  M  R  C  S  A  N  Y  F  P  L  T  P  I  S  F  L  D  R  A  A  K  V  F  R  D  R  T  S  V  V  Y  G  S  S  V  K  F  T  W  E  E  T  H  N  R  C  L  K  M  A  S  A  L  S  Q  L  G  I  S  R  G  D  V  :  V  A  T  L  A  P  N  V  P  A  V  Q  E  L  H  F  A  V  P  M  A  G  A  V  L  C  T  L  N  T  R  H  D  S  A  M  V  S  V  L  L  R  H  S  E  A  K  I  I  F  V  D  </first_frame>
            <second_frame>  *  I  L  F  S  I  F  Q  D  *  M  G  C  Y  M  L  *  T  E  F  E  F  T  P  F  *  V  R  G  L  V  I  C  P  K  L  F  M  R  M  L  K  L  T  H  G  N  P  W  R  D  *  *  G  V  Q  L  I  I  S  L  *  H  P  L  V  S  W  T  E  L  L  R  F  L  E  T  G  L  L  L  C  M  V  L  L  L  N  S  L  G  K  R  L  I  I  D  V  *  R  W  L  L  L  C  L  S  W  V  F  L  V  V  M  L :   L  Q  R  W  L  L  M  Y  P  Q  C  K  S  C  I  L  R  F  Q  W  Q  E  Q  C  F  V  R  *  I  H  V  M  I  Q  L  W  Y  L  F  S  *  G  I  Q  K  L  R  S  F  S  L  T </second_frame>
            <third_frame>   E  S  F  F  Q  Y  F  K  I  E  W  V  V  T  C  S  K  Q  S  S  S  S  P  H  F  E  S  E  V  S  L  F  V  P  N  Y  S  *  E  C  *  N  S  P  M  G  I  H  G  G  T  N  E  V  F  S  *  L  F  P  F  N  T  H  *  F  L  G  Q  S  C  *  G  F  *  R  Q  D  F  C  C  V  W  F  F  C  *  I  H  L  G  R  D  S  *  *  M  S  K  D  G  F  C  S  V  S  V  G  Y  F  S  W  *  C   : C  C  N  A  G  S  *  C  T  R  S  A  R  V  A  F  C  G  S  N  G  R  S  S  A  L  Y  V  E  Y  T  S  *  F  S  Y  G  I  C  S  P  E  A  F  R  S  *  D  H  F  R  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0031D11.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70759" stop="71103"/>
                    <exon start="71276" stop="71431"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>501</number_coding_nucleotides>
                  <number_encoded_amino_acids>167</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MNPFFNISRLNGLLHALNRVRVHPILSQRSRYLSQIIHENVETHPWESMEGLMRCSANYFPLTPISFLDRAAKVFRDRTSVVYGSSVKFTWEETHNRCLKMASALSQLGISRGDVVATLAPNVPAVQELHFAVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="71000" e_stop="71513"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="71000" e_stop="71513" e_length="514"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71000" stop="71513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299936" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGTGTATGGTTCTTCTGTTAAATTCACTTGGGAAGAGACTCATAATAGATGTCTAAAGATGGCTTCTGCTCTGTCTCAGTTGGGTATTTCTCGTGGTGATGTTGTAAGTTCGATTTCTCCGCTTTAGAATATTACGTCTAAATGAATGGTTAATAGTATATGGCTAAACTTTTTCATCTTTGGAATAAACTTCTACTAACATTTTAGTTTGATCACATATGAAAAGTTTTTAAATCTGTGATGTCTCATGGTTGTTAGTGTAAATGCTTGAATAGGTTGCAACGCTGGCTCCTAATGTACCCGCAGTGCAAGAGTTGCATTTTGCGGTTCCAATGGCAGGAGCAGTGCTTTGTACGTTGAATACACGTCATGATTCAGCTATGGTATCTGTTCTCCTGAGGCATTCAGAAGCTAAGATCATTTTCGTTGACCAGCAGTTGTTTGATGTTGCTCAAGGAGCACTGGATCTTCTTGCAGATGCTAAAACAAAACCTCTTCTAATATTAATCCCTG</gDNA_template>
            <first_frame> L  C  M  V  L  L  L  N  S  L  G  K  R  L  I  I  D  V  *  R  W  L  L  L  C  L  S  W  V  F  L  V  V  M  L  *  V  R  F  L  R  F  R  I  L  R  L  N  E  W  L  I  V  Y  G  *  T  F  S  S  L  E  *  T  S  T  N  I  L  V  *  S  H  M  K  S  F  *  I  C  D  V  S  W  L  L  V  *  M  L  E  *  V  A  T  L  A  P  N  V  P  A  V  Q  E  L  H  F  A  V  P  M  A  G  A  V  L  C  T  L  N  T  R  H  D  S  A  M  V  S  V  L  L  R  H  S  E  A  K  I  I  F  V  D  Q  Q  L  F  D  V  A  Q  G  A  L  D  L  L  A  D  A  K  T  K  P  L  L  I  L  I  P  </first_frame>
            <second_frame>  C  V  W  F  F  C  *  I  H  L  G  R  D  S  *  *  M  S  K  D  G  F  C  S  V  S  V  G  Y  F  S  W  *  C  C  K  F  D  F  S  A  L  E  Y  Y  V  *  M  N  G  *  *  Y  M  A  K  L  F  H  L  W  N  K  L  L  L  T  F  *  F  D  H  I  *  K  V  F  K  S  V  M  S  H  G  C  *  C  K  C  L  N  R  L  Q  R  W  L  L  M  Y  P  Q  C  K  S  C  I  L  R  F  Q  W  Q  E  Q  C  F  V  R  *  I  H  V  M  I  Q  L  W  Y  L  F  S  *  G  I  Q  K  L  R  S  F  S  L  T  S  S  C  L  M  L  L  K  E  H  W  I  F  L  Q  M  L  K  Q  N  L  F  *  Y  *  S  L </second_frame>
            <third_frame>   V  Y  G  S  S  V  K  F  T  W  E  E  T  H  N  R  C  L  K  M  A  S  A  L  S  Q  L  G  I  S  R  G  D  V  V  S  S  I  S  P  L  *  N  I  T  S  K  *  M  V  N  S  I  W  L  N  F  F  I  F  G  I  N  F  Y  *  H  F  S  L  I  T  Y  E  K  F  L  N  L  *  C  L  M  V  V  S  V  N  A  *  I  G  C  N  A  G  S  *  C  T  R  S  A  R  V  A  F  C  G  S  N  G  R  S  S  A  L  Y  V  E  Y  T  S  *  F  S  Y  G  I  C  S  P  E  A  F  R  S  *  D  H  F  R  *  P  A  V  V  *  C  C  S  R  S  T  G  S  S  C  R  C  *  N  K  T  S  S  N  I  N  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0031D11.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71276" stop="71512"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VATLAPNVPAVQELHFAVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDQQLFDVAQGALDLLADAKTKPLLILIP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="77852" PGL_stop="74002"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77852" e_stop="77279"/>
            <exon e_start="75975" e_stop="75665"/>
            <exon e_start="75588" e_stop="75456"/>
            <exon e_start="75371" e_stop="74930"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.912" e_score="0.998"/>
          <exon-intron don_prob="0.996" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="77852" e_stop="77279" e_length="574"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.912">
            <gDNA_intron_boundary i_start="77278" i_stop="75976" i_length="1303"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="75975" e_stop="75665" e_length="311"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.996">
            <gDNA_intron_boundary i_start="75664" i_stop="75589" i_length="76"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="75588" e_stop="75456" e_length="133"/>
          </exon>
          <intron i_serial="3" don_prob="0.982" acc_prob="0.982">
            <gDNA_intron_boundary i_start="75455" i_stop="75372" i_length="84"/>
          </intron>
          <exon e_serial="4" e_score="0.973">
            <gDNA_exon_boundary e_start="75371" e_stop="74930" e_length="442"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77852" stop="77309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77811" stop="77477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77785" stop="77346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77726" stop="77279"/>
              <exon start="75975" stop="75669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77685" stop="77279"/>
              <exon start="75975" stop="75675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E600641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77611" stop="77279"/>
              <exon start="75975" stop="75706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77609" stop="77279"/>
              <exon start="75975" stop="75950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77538" stop="77279"/>
              <exon start="75975" stop="75665"/>
              <exon start="75588" stop="75552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77538" stop="77279"/>
              <exon start="75975" stop="75717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77474" stop="77279"/>
              <exon start="75975" stop="75898"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213450" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75975" stop="75665"/>
              <exon start="75588" stop="75456"/>
              <exon start="75371" stop="75185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75975" stop="75665"/>
              <exon start="75588" stop="75456"/>
              <exon start="75371" stop="75352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75905" stop="75665"/>
              <exon start="75588" stop="75456"/>
              <exon start="75371" stop="75018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75701" stop="75665"/>
              <exon start="75588" stop="75456"/>
              <exon start="75371" stop="74930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304314" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATTTTATTTTTTTGTTATGATAAGAATGGAAACAAAGAGGAATACGAGTCAACACATACCTTCTTCTTTGCTGACGATTTGTTATTATCTCAAATGTTAATCCTTCATCTGCTCTTCTATTCACACTAGCCCCAATTTCTTCTTCTTCTTCTACAATAACAACTGCAAATATGACTTCTCCCTCCATCTTTCTAAACCCTATTTTTATTTCACTAATAATACCCGTTATTCTAGGTACGGTTTTCTATCAACTCGATTCCTTCGACCCGGTTTCTTATCCGACCCATGTGCTCTCTACTGACCCGCCTATTGTTGCACCAAAGCGCAATAACCAGGTGCTCCGTGGCTCCGAAAACATCGGAGTTAACCAGCTATTAGCACCCGAAGACGTAGCCTACGATCCGGAATCGGGAGTTATATACACTGCGTGTGTTGATGGGTGGGTTAAAAAAGTGAAAGTCAACGAATCGGCGGCGGATTCCACGGTGGAGGATTGGGTTTTCACCGGTGGCAGACCTCTCGGGCTTGCTCTAGGACATCACGGCGAAGTTATCGTTGCAGATTCAGAAAAG : GGATTATTACTCAACGTTACTTCTGAGGGTGAAATTAAAGTGCTAACAGAGGAAGCTGAAGGCCTGAAATTGAAATTGGCAGACGCTGTAGACGTTGCAGAGGATGGAATTATATATTTCTCCGATGCTTCTTACAAATATAATATCGAACAATACATTTATGATTTTCTTGAAGGAAGACCCCATGGAAGATTGTTAAGTTATGATCCATCAACTAAACAGACTAAAACGCTACTTAGCAACCTGCATTTTGCTAATGGCGTTGCAGTCTCTCCAGATCAAAATTATGTTATCTTCTGTGAAACTCCTCT : GAGGAAATGCAAAAAGTATCATATAAAAGGCGAAAAAAAAGGATCCGTGGATATGTTTGTTGATAATTTACCTGGATTTCCTGACAACATTCGTTACGATGGTGAAGGGCATTATTGGATTGCATTTGCCTCG : GAAAACACATATTCATGGGACTTGACCCTAAAGTACCCATTCATCAGAAAGATAATGGCTATAATGGTGAAATATGTTGGACAACCAAAGACAGAGAAAAATGGTGGTGTTTTATCTGTTGATTTACAAGGAAATCCACTGGAACACTATTATGATGAGGATTTGACAATGGTGTCAAGTGGCATTAAGATTGGTGATCATTTGTACTGTGGCTCTGTTAAGTCTCCGTATATACTACGCCTCAATCTCAAACAATATCCTGCCGTTTAAACTTCATAAACAAAAATGTAAGTGTTTGATTTCAAAAAATAATGGGTGTATTTGTTAGTACAAGTATATTCGTTCAATTTTGCATAAGATTTCCACTATATAAGATGTGTAAGTGTTTTCTTTTTAATTTATTATAAATAATAATAAGAGTCAGCATATGCAACTAAATCAT</gDNA_template>
            <first_frame> K  F  Y  F  F  V  M  I  R  M  E  T  K  R  N  T  S  Q  H  I  P  S  S  L  L  T  I  C  Y  Y  L  K  C  *  S  F  I  C  S  S  I  H  T  S  P  N  F  F  F  F  F  Y  N  N  N  C  K  Y  D  F  S  L  H  L  S  K  P  Y  F  Y  F  T  N  N  T  R  Y  S  R  Y  G  F  L  S  T  R  F  L  R  P  G  F  L  S  D  P  C  A  L  Y  *  P  A  Y  C  C  T  K  A  Q  *  P  G  A  P  W  L  R  K  H  R  S  *  P  A  I  S  T  R  R  R  S  L  R  S  G  I  G  S  Y  I  H  C  V  C  *  W  V  G  *  K  S  E  S  Q  R  I  G  G  G  F  H  G  G  G  L  G  F  H  R  W  Q  T  S  R  A  C  S  R  T  S  R  R  S  Y  R  C  R  F  R  K   : G  I  I  T  Q  R  Y  F  *  G  *  N  *  S  A  N  R  G  S  *  R  P  E  I  E  I  G  R  R  C  R  R  C  R  G  W  N  Y  I  F  L  R  C  F  L  Q  I  *  Y  R  T  I  H  L  *  F  S  *  R  K  T  P  W  K  I  V  K  L  *  S  I  N  *  T  D  *  N  A  T  *  Q  P  A  F  C  *  W  R  C  S  L  S  R  S  K  L  C  Y  L  L  *  N  S  S  :  E  E  M  Q  K  V  S  Y  K  R  R  K  K  R  I  R  G  Y  V  C  *  *  F  T  W  I  S  *  Q  H  S  L  R  W  *  R  A  L  L  D  C  I  C  L   : G  K  H  I  F  M  G  L  D  P  K  V  P  I  H  Q  K  D  N  G  Y  N  G  E  I  C  W  T  T  K  D  R  E  K  W  W  C  F  I  C  *  F  T  R  K  S  T  G  T  L  L  *  *  G  F  D  N  G  V  K  W  H  *  D  W  *  S  F  V  L  W  L  C  *  V  S  V  Y  T  T  P  Q  S  Q  T  I  S  C  R  L  N  F  I  N  K  N  V  S  V  *  F  Q  K  I  M  G  V  F  V  S  T  S  I  F  V  Q  F  C  I  R  F  P  L  Y  K  M  C  K  C  F  L  F  N  L  L  *  I  I  I  R  V  S  I  C  N  *  I   </first_frame>
            <second_frame>  N  F  I  F  L  L  *  *  E  W  K  Q  R  G  I  R  V  N  T  Y  L  L  L  C  *  R  F  V  I  I  S  N  V  N  P  S  S  A  L  L  F  T  L  A  P  I  S  S  S  S  S  T  I  T  T  A  N  M  T  S  P  S  I  F  L  N  P  I  F  I  S  L  I  I  P  V  I  L  G  T  V  F  Y  Q  L  D  S  F  D  P  V  S  Y  P  T  H  V  L  S  T  D  P  P  I  V  A  P  K  R  N  N  Q  V  L  R  G  S  E  N  I  G  V  N  Q  L  L  A  P  E  D  V  A  Y  D  P  E  S  G  V  I  Y  T  A  C  V  D  G  W  V  K  K  V  K  V  N  E  S  A  A  D  S  T  V  E  D  W  V  F  T  G  G  R  P  L  G  L  A  L  G  H  H  G  E  V  I  V  A  D  S  E  K  :  G  L  L  L  N  V  T  S  E  G  E  I  K  V  L  T  E  E  A  E  G  L  K  L  K  L  A  D  A  V  D  V  A  E  D  G  I  I  Y  F  S  D  A  S  Y  K  Y  N  I  E  Q  Y  I  Y  D  F  L  E  G  R  P  H  G  R  L  L  S  Y  D  P  S  T  K  Q  T  K  T  L  L  S  N  L  H  F  A  N  G  V  A  V  S  P  D  Q  N  Y  V  I  F  C  E  T  P  L :   R  K  C  K  K  Y  H  I  K  G  E  K  K  G  S  V  D  M  F  V  D  N  L  P  G  F  P  D  N  I  R  Y  D  G  E  G  H  Y  W  I  A  F  A  S  :  E  N  T  Y  S  W  D  L  T  L  K  Y  P  F  I  R  K  I  M  A  I  M  V  K  Y  V  G  Q  P  K  T  E  K  N  G  G  V  L  S  V  D  L  Q  G  N  P  L  E  H  Y  Y  D  E  D  L  T  M  V  S  S  G  I  K  I  G  D  H  L  Y  C  G  S  V  K  S  P  Y  I  L  R  L  N  L  K  Q  Y  P  A  V  *  T  S  *  T  K  M  *  V  F  D  F  K  K  *  W  V  Y  L  L  V  Q  V  Y  S  F  N  F  A  *  D  F  H  Y  I  R  C  V  S  V  F  F  L  I  Y  Y  K  *  *  *  E  S  A  Y  A  T  K  S  </second_frame>
            <third_frame>   I  L  F  F  C  Y  D  K  N  G  N  K  E  E  Y  E  S  T  H  T  F  F  F  A  D  D  L  L  L  S  Q  M  L  I  L  H  L  L  F  Y  S  H  *  P  Q  F  L  L  L  L  L  Q  *  Q  L  Q  I  *  L  L  P  P  S  F  *  T  L  F  L  F  H  *  *  Y  P  L  F  *  V  R  F  S  I  N  S  I  P  S  T  R  F  L  I  R  P  M  C  S  L  L  T  R  L  L  L  H  Q  S  A  I  T  R  C  S  V  A  P  K  T  S  E  L  T  S  Y  *  H  P  K  T  *  P  T  I  R  N  R  E  L  Y  T  L  R  V  L  M  G  G  L  K  K  *  K  S  T  N  R  R  R  I  P  R  W  R  I  G  F  S  P  V  A  D  L  S  G  L  L  *  D  I  T  A  K  L  S  L  Q  I  Q  K  R :   D  Y  Y  S  T  L  L  L  R  V  K  L  K  C  *  Q  R  K  L  K  A  *  N  *  N  W  Q  T  L  *  T  L  Q  R  M  E  L  Y  I  S  P  M  L  L  T  N  I  I  S  N  N  T  F  M  I  F  L  K  E  D  P  M  E  D  C  *  V  M  I  H  Q  L  N  R  L  K  R  Y  L  A  T  C  I  L  L  M  A  L  Q  S  L  Q  I  K  I  M  L  S  S  V  K  L  L   : *  G  N  A  K  S  I  I  *  K  A  K  K  K  D  P  W  I  C  L  L  I  I  Y  L  D  F  L  T  T  F  V  T  M  V  K  G  I  I  G  L  H  L  P  R :   K  T  H  I  H  G  T  *  P  *  S  T  H  S  S  E  R  *  W  L  *  W  *  N  M  L  D  N  Q  R  Q  R  K  M  V  V  F  Y  L  L  I  Y  K  E  I  H  W  N  T  I  M  M  R  I  *  Q  W  C  Q  V  A  L  R  L  V  I  I  C  T  V  A  L  L  S  L  R  I  Y  Y  A  S  I  S  N  N  I  L  P  F  K  L  H  K  Q  K  C  K  C  L  I  S  K  N  N  G  C  I  C  *  Y  K  Y  I  R  S  I  L  H  K  I  S  T  I  *  D  V  *  V  F  S  F  *  F  I  I  N  N  N  K  S  Q  H  M  Q  L  N  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0031D11.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77776" stop="77279"/>
                    <exon start="75975" stop="75665"/>
                    <exon start="75588" stop="75456"/>
                    <exon start="75371" stop="75102"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1209</number_coding_nucleotides>
                  <number_encoded_amino_acids>403</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RFVIISNVNPSSALLFTLAPISSSSSTITTANMTSPSIFLNPIFISLIIPVILGTVFYQLDSFDPVSYPTHVLSTDPPIVAPKRNNQVLRGSENIGVNQLLAPEDVAYDPESGVIYTACVDGWVKKVKVNESAADSTVEDWVFTGGRPLGLALGHHGEVIVADSEKGLLLNVTSEGEIKVLTEEAEGLKLKLADAVDVAEDGIIYFSDASYKYNIEQYIYDFLEGRPHGRLLSYDPSTKQTKTLLSNLHFANGVAVSPDQNYVIFCETPLRKCKKYHIKGEKKGSVDMFVDNLPGFPDNIRYDGEGHYWIAFASENTYSWDLTLKYPFIRKIMAIMVKYVGQPKTEKNGGVLSVDLQGNPLEHYYDEDLTMVSSGIKIGDHLYCGSVKSPYILRLNLKQYPAV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="77852" e_stop="77279"/>
            <exon e_start="75975" e_stop="75665"/>
            <exon e_start="75588" e_stop="75456"/>
            <exon e_start="75371" e_stop="74934"/>
            <exon e_start="74267" e_stop="74234"/>
            <exon e_start="74011" e_stop="74002"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.912" e_score="0.998"/>
          <exon-intron don_prob="0.996" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.374" e_score="0.995"/>
          <exon-intron don_prob="0.900" acc_prob="0.661" e_score="0.529"/>
          <exon-only e_score="0.800"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="77852" e_stop="77279" e_length="574"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.912">
            <gDNA_intron_boundary i_start="77278" i_stop="75976" i_length="1303"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="75975" e_stop="75665" e_length="311"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.996">
            <gDNA_intron_boundary i_start="75664" i_stop="75589" i_length="76"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="75588" e_stop="75456" e_length="133"/>
          </exon>
          <intron i_serial="3" don_prob="0.982" acc_prob="0.982">
            <gDNA_intron_boundary i_start="75455" i_stop="75372" i_length="84"/>
          </intron>
          <exon e_serial="4" e_score="0.995">
            <gDNA_exon_boundary e_start="75371" e_stop="74934" e_length="438"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.374">
            <gDNA_intron_boundary i_start="74933" i_stop="74268" i_length="666"/>
          </intron>
          <exon e_serial="5" e_score="0.529">
            <gDNA_exon_boundary e_start="74267" e_stop="74234" e_length="34"/>
          </exon>
          <intron i_serial="5" don_prob="0.900" acc_prob="0.661">
            <gDNA_intron_boundary i_start="74233" i_stop="74012" i_length="222"/>
          </intron>
          <exon e_serial="6" e_score="0.800">
            <gDNA_exon_boundary e_start="74011" e_stop="74002" e_length="10"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77852" stop="77309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77811" stop="77477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77785" stop="77346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77726" stop="77279"/>
              <exon start="75975" stop="75669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77685" stop="77279"/>
              <exon start="75975" stop="75675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E600641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77611" stop="77279"/>
              <exon start="75975" stop="75706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77609" stop="77279"/>
              <exon start="75975" stop="75950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77538" stop="77279"/>
              <exon start="75975" stop="75665"/>
              <exon start="75588" stop="75552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77538" stop="77279"/>
              <exon start="75975" stop="75717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77474" stop="77279"/>
              <exon start="75975" stop="75898"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213450" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75975" stop="75665"/>
              <exon start="75588" stop="75456"/>
              <exon start="75371" stop="75185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75975" stop="75665"/>
              <exon start="75588" stop="75456"/>
              <exon start="75371" stop="75352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75905" stop="75665"/>
              <exon start="75588" stop="75456"/>
              <exon start="75371" stop="75018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75323" stop="74934"/>
              <exon start="74267" stop="74234"/>
              <exon start="74011" stop="74002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301628" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATTTTATTTTTTTGTTATGATAAGAATGGAAACAAAGAGGAATACGAGTCAACACATACCTTCTTCTTTGCTGACGATTTGTTATTATCTCAAATGTTAATCCTTCATCTGCTCTTCTATTCACACTAGCCCCAATTTCTTCTTCTTCTTCTACAATAACAACTGCAAATATGACTTCTCCCTCCATCTTTCTAAACCCTATTTTTATTTCACTAATAATACCCGTTATTCTAGGTACGGTTTTCTATCAACTCGATTCCTTCGACCCGGTTTCTTATCCGACCCATGTGCTCTCTACTGACCCGCCTATTGTTGCACCAAAGCGCAATAACCAGGTGCTCCGTGGCTCCGAAAACATCGGAGTTAACCAGCTATTAGCACCCGAAGACGTAGCCTACGATCCGGAATCGGGAGTTATATACACTGCGTGTGTTGATGGGTGGGTTAAAAAAGTGAAAGTCAACGAATCGGCGGCGGATTCCACGGTGGAGGATTGGGTTTTCACCGGTGGCAGACCTCTCGGGCTTGCTCTAGGACATCACGGCGAAGTTATCGTTGCAGATTCAGAAAAG : GGATTATTACTCAACGTTACTTCTGAGGGTGAAATTAAAGTGCTAACAGAGGAAGCTGAAGGCCTGAAATTGAAATTGGCAGACGCTGTAGACGTTGCAGAGGATGGAATTATATATTTCTCCGATGCTTCTTACAAATATAATATCGAACAATACATTTATGATTTTCTTGAAGGAAGACCCCATGGAAGATTGTTAAGTTATGATCCATCAACTAAACAGACTAAAACGCTACTTAGCAACCTGCATTTTGCTAATGGCGTTGCAGTCTCTCCAGATCAAAATTATGTTATCTTCTGTGAAACTCCTCT : GAGGAAATGCAAAAAGTATCATATAAAAGGCGAAAAAAAAGGATCCGTGGATATGTTTGTTGATAATTTACCTGGATTTCCTGACAACATTCGTTACGATGGTGAAGGGCATTATTGGATTGCATTTGCCTCG : GAAAACACATATTCATGGGACTTGACCCTAAAGTACCCATTCATCAGAAAGATAATGGCTATAATGGTGAAATATGTTGGACAACCAAAGACAGAGAAAAATGGTGGTGTTTTATCTGTTGATTTACAAGGAAATCCACTGGAACACTATTATGATGAGGATTTGACAATGGTGTCAAGTGGCATTAAGATTGGTGATCATTTGTACTGTGGCTCTGTTAAGTCTCCGTATATACTACGCCTCAATCTCAAACAATATCCTGCCGTTTAAACTTCATAAACAAAAATGTAAGTGTTTGATTTCAAAAAATAATGGGTGTATTTGTTAGTACAAGTATATTCGTTCAATTTTGCATAAGATTTCCACTATATAAGATGTGTAAGTGTTTTCTTTTTAATTTATTATAAATAATAATAAGAGTCAGCATATGCAACTAAA : GAAAAAATAGATTTATTTAAATATCAAAACTTGA : ATGTCTCTCC</gDNA_template>
            <first_frame> K  F  Y  F  F  V  M  I  R  M  E  T  K  R  N  T  S  Q  H  I  P  S  S  L  L  T  I  C  Y  Y  L  K  C  *  S  F  I  C  S  S  I  H  T  S  P  N  F  F  F  F  F  Y  N  N  N  C  K  Y  D  F  S  L  H  L  S  K  P  Y  F  Y  F  T  N  N  T  R  Y  S  R  Y  G  F  L  S  T  R  F  L  R  P  G  F  L  S  D  P  C  A  L  Y  *  P  A  Y  C  C  T  K  A  Q  *  P  G  A  P  W  L  R  K  H  R  S  *  P  A  I  S  T  R  R  R  S  L  R  S  G  I  G  S  Y  I  H  C  V  C  *  W  V  G  *  K  S  E  S  Q  R  I  G  G  G  F  H  G  G  G  L  G  F  H  R  W  Q  T  S  R  A  C  S  R  T  S  R  R  S  Y  R  C  R  F  R  K   : G  I  I  T  Q  R  Y  F  *  G  *  N  *  S  A  N  R  G  S  *  R  P  E  I  E  I  G  R  R  C  R  R  C  R  G  W  N  Y  I  F  L  R  C  F  L  Q  I  *  Y  R  T  I  H  L  *  F  S  *  R  K  T  P  W  K  I  V  K  L  *  S  I  N  *  T  D  *  N  A  T  *  Q  P  A  F  C  *  W  R  C  S  L  S  R  S  K  L  C  Y  L  L  *  N  S  S  :  E  E  M  Q  K  V  S  Y  K  R  R  K  K  R  I  R  G  Y  V  C  *  *  F  T  W  I  S  *  Q  H  S  L  R  W  *  R  A  L  L  D  C  I  C  L   : G  K  H  I  F  M  G  L  D  P  K  V  P  I  H  Q  K  D  N  G  Y  N  G  E  I  C  W  T  T  K  D  R  E  K  W  W  C  F  I  C  *  F  T  R  K  S  T  G  T  L  L  *  *  G  F  D  N  G  V  K  W  H  *  D  W  *  S  F  V  L  W  L  C  *  V  S  V  Y  T  T  P  Q  S  Q  T  I  S  C  R  L  N  F  I  N  K  N  V  S  V  *  F  Q  K  I  M  G  V  F  V  S  T  S  I  F  V  Q  F  C  I  R  F  P  L  Y  K  M  C  K  C  F  L  F  N  L  L  *  I  I  I  R  V  S  I  C  N  *   : R  K  N  R  F  I  *  I  S  K  L  E :   C  L  S </first_frame>
            <second_frame>  N  F  I  F  L  L  *  *  E  W  K  Q  R  G  I  R  V  N  T  Y  L  L  L  C  *  R  F  V  I  I  S  N  V  N  P  S  S  A  L  L  F  T  L  A  P  I  S  S  S  S  S  T  I  T  T  A  N  M  T  S  P  S  I  F  L  N  P  I  F  I  S  L  I  I  P  V  I  L  G  T  V  F  Y  Q  L  D  S  F  D  P  V  S  Y  P  T  H  V  L  S  T  D  P  P  I  V  A  P  K  R  N  N  Q  V  L  R  G  S  E  N  I  G  V  N  Q  L  L  A  P  E  D  V  A  Y  D  P  E  S  G  V  I  Y  T  A  C  V  D  G  W  V  K  K  V  K  V  N  E  S  A  A  D  S  T  V  E  D  W  V  F  T  G  G  R  P  L  G  L  A  L  G  H  H  G  E  V  I  V  A  D  S  E  K  :  G  L  L  L  N  V  T  S  E  G  E  I  K  V  L  T  E  E  A  E  G  L  K  L  K  L  A  D  A  V  D  V  A  E  D  G  I  I  Y  F  S  D  A  S  Y  K  Y  N  I  E  Q  Y  I  Y  D  F  L  E  G  R  P  H  G  R  L  L  S  Y  D  P  S  T  K  Q  T  K  T  L  L  S  N  L  H  F  A  N  G  V  A  V  S  P  D  Q  N  Y  V  I  F  C  E  T  P  L :   R  K  C  K  K  Y  H  I  K  G  E  K  K  G  S  V  D  M  F  V  D  N  L  P  G  F  P  D  N  I  R  Y  D  G  E  G  H  Y  W  I  A  F  A  S  :  E  N  T  Y  S  W  D  L  T  L  K  Y  P  F  I  R  K  I  M  A  I  M  V  K  Y  V  G  Q  P  K  T  E  K  N  G  G  V  L  S  V  D  L  Q  G  N  P  L  E  H  Y  Y  D  E  D  L  T  M  V  S  S  G  I  K  I  G  D  H  L  Y  C  G  S  V  K  S  P  Y  I  L  R  L  N  L  K  Q  Y  P  A  V  *  T  S  *  T  K  M  *  V  F  D  F  K  K  *  W  V  Y  L  L  V  Q  V  Y  S  F  N  F  A  *  D  F  H  Y  I  R  C  V  S  V  F  F  L  I  Y  Y  K  *  *  *  E  S  A  Y  A  T  K  :  E  K  I  D  L  F  K  Y  Q  N  L   : N  V  S   </second_frame>
            <third_frame>   I  L  F  F  C  Y  D  K  N  G  N  K  E  E  Y  E  S  T  H  T  F  F  F  A  D  D  L  L  L  S  Q  M  L  I  L  H  L  L  F  Y  S  H  *  P  Q  F  L  L  L  L  L  Q  *  Q  L  Q  I  *  L  L  P  P  S  F  *  T  L  F  L  F  H  *  *  Y  P  L  F  *  V  R  F  S  I  N  S  I  P  S  T  R  F  L  I  R  P  M  C  S  L  L  T  R  L  L  L  H  Q  S  A  I  T  R  C  S  V  A  P  K  T  S  E  L  T  S  Y  *  H  P  K  T  *  P  T  I  R  N  R  E  L  Y  T  L  R  V  L  M  G  G  L  K  K  *  K  S  T  N  R  R  R  I  P  R  W  R  I  G  F  S  P  V  A  D  L  S  G  L  L  *  D  I  T  A  K  L  S  L  Q  I  Q  K  R :   D  Y  Y  S  T  L  L  L  R  V  K  L  K  C  *  Q  R  K  L  K  A  *  N  *  N  W  Q  T  L  *  T  L  Q  R  M  E  L  Y  I  S  P  M  L  L  T  N  I  I  S  N  N  T  F  M  I  F  L  K  E  D  P  M  E  D  C  *  V  M  I  H  Q  L  N  R  L  K  R  Y  L  A  T  C  I  L  L  M  A  L  Q  S  L  Q  I  K  I  M  L  S  S  V  K  L  L   : *  G  N  A  K  S  I  I  *  K  A  K  K  K  D  P  W  I  C  L  L  I  I  Y  L  D  F  L  T  T  F  V  T  M  V  K  G  I  I  G  L  H  L  P  R :   K  T  H  I  H  G  T  *  P  *  S  T  H  S  S  E  R  *  W  L  *  W  *  N  M  L  D  N  Q  R  Q  R  K  M  V  V  F  Y  L  L  I  Y  K  E  I  H  W  N  T  I  M  M  R  I  *  Q  W  C  Q  V  A  L  R  L  V  I  I  C  T  V  A  L  L  S  L  R  I  Y  Y  A  S  I  S  N  N  I  L  P  F  K  L  H  K  Q  K  C  K  C  L  I  S  K  N  N  G  C  I  C  *  Y  K  Y  I  R  S  I  L  H  K  I  S  T  I  *  D  V  *  V  F  S  F  *  F  I  I  N  N  N  K  S  Q  H  M  Q  L  K :   K  K  *  I  Y  L  N  I  K  T  *  :  M  S  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0031D11.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77776" stop="77279"/>
                    <exon start="75975" stop="75665"/>
                    <exon start="75588" stop="75456"/>
                    <exon start="75371" stop="75102"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1209</number_coding_nucleotides>
                  <number_encoded_amino_acids>403</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RFVIISNVNPSSALLFTLAPISSSSSTITTANMTSPSIFLNPIFISLIIPVILGTVFYQLDSFDPVSYPTHVLSTDPPIVAPKRNNQVLRGSENIGVNQLLAPEDVAYDPESGVIYTACVDGWVKKVKVNESAADSTVEDWVFTGGRPLGLALGHHGEVIVADSEKGLLLNVTSEGEIKVLTEEAEGLKLKLADAVDVAEDGIIYFSDASYKYNIEQYIYDFLEGRPHGRLLSYDPSTKQTKTLLSNLHFANGVAVSPDQNYVIFCETPLRKCKKYHIKGEKKGSVDMFVDNLPGFPDNIRYDGEGHYWIAFASENTYSWDLTLKYPFIRKIMAIMVKYVGQPKTEKNGGVLSVDLQGNPLEHYYDEDLTMVSSGIKIGDHLYCGSVKSPYILRLNLKQYPAV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="77852" e_stop="77279"/>
            <exon e_start="75975" e_stop="75665"/>
            <exon e_start="75588" e_stop="74934"/>
            <exon e_start="74267" e_stop="74234"/>
            <exon e_start="74011" e_stop="74002"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.912" e_score="0.998"/>
          <exon-intron don_prob="0.996" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.374" e_score="0.995"/>
          <exon-intron don_prob="0.900" acc_prob="0.661" e_score="0.529"/>
          <exon-only e_score="0.800"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="77852" e_stop="77279" e_length="574"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.912">
            <gDNA_intron_boundary i_start="77278" i_stop="75976" i_length="1303"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="75975" e_stop="75665" e_length="311"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.996">
            <gDNA_intron_boundary i_start="75664" i_stop="75589" i_length="76"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="75588" e_stop="74934" e_length="655"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.374">
            <gDNA_intron_boundary i_start="74933" i_stop="74268" i_length="666"/>
          </intron>
          <exon e_serial="4" e_score="0.529">
            <gDNA_exon_boundary e_start="74267" e_stop="74234" e_length="34"/>
          </exon>
          <intron i_serial="4" don_prob="0.900" acc_prob="0.661">
            <gDNA_intron_boundary i_start="74233" i_stop="74012" i_length="222"/>
          </intron>
          <exon e_serial="5" e_score="0.800">
            <gDNA_exon_boundary e_start="74011" e_stop="74002" e_length="10"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77852" stop="77309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77811" stop="77477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77785" stop="77346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77726" stop="77279"/>
              <exon start="75975" stop="75669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77685" stop="77279"/>
              <exon start="75975" stop="75675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E600641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77611" stop="77279"/>
              <exon start="75975" stop="75706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77609" stop="77279"/>
              <exon start="75975" stop="75950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77538" stop="77279"/>
              <exon start="75975" stop="75665"/>
              <exon start="75588" stop="75552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77538" stop="77279"/>
              <exon start="75975" stop="75717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77474" stop="77279"/>
              <exon start="75975" stop="75898"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213450" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75965" stop="75665"/>
              <exon start="75588" stop="75201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75323" stop="74934"/>
              <exon start="74267" stop="74234"/>
              <exon start="74011" stop="74002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301628" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATTTTATTTTTTTGTTATGATAAGAATGGAAACAAAGAGGAATACGAGTCAACACATACCTTCTTCTTTGCTGACGATTTGTTATTATCTCAAATGTTAATCCTTCATCTGCTCTTCTATTCACACTAGCCCCAATTTCTTCTTCTTCTTCTACAATAACAACTGCAAATATGACTTCTCCCTCCATCTTTCTAAACCCTATTTTTATTTCACTAATAATACCCGTTATTCTAGGTACGGTTTTCTATCAACTCGATTCCTTCGACCCGGTTTCTTATCCGACCCATGTGCTCTCTACTGACCCGCCTATTGTTGCACCAAAGCGCAATAACCAGGTGCTCCGTGGCTCCGAAAACATCGGAGTTAACCAGCTATTAGCACCCGAAGACGTAGCCTACGATCCGGAATCGGGAGTTATATACACTGCGTGTGTTGATGGGTGGGTTAAAAAAGTGAAAGTCAACGAATCGGCGGCGGATTCCACGGTGGAGGATTGGGTTTTCACCGGTGGCAGACCTCTCGGGCTTGCTCTAGGACATCACGGCGAAGTTATCGTTGCAGATTCAGAAAAG : GGATTATTACTCAACGTTACTTCTGAGGGTGAAATTAAAGTGCTAACAGAGGAAGCTGAAGGCCTGAAATTGAAATTGGCAGACGCTGTAGACGTTGCAGAGGATGGAATTATATATTTCTCCGATGCTTCTTACAAATATAATATCGAACAATACATTTATGATTTTCTTGAAGGAAGACCCCATGGAAGATTGTTAAGTTATGATCCATCAACTAAACAGACTAAAACGCTACTTAGCAACCTGCATTTTGCTAATGGCGTTGCAGTCTCTCCAGATCAAAATTATGTTATCTTCTGTGAAACTCCTCT : GAGGAAATGCAAAAAGTATCATATAAAAGGCGAAAAAAAAGGATCCGTGGATATGTTTGTTGATAATTTACCTGGATTTCCTGACAACATTCGTTACGATGGTGAAGGGCATTATTGGATTGCATTTGCCTCGGTTAGTTTCTTCATAACATTTAAATTTAATGTGTTCAACAGGGTACACTGCTCTCTCATATTTTGTTTCTGATAACTTGAACAGGAAAACACATATTCATGGGACTTGACCCTAAAGTACCCATTCATCAGAAAGATAATGGCTATAATGGTGAAATATGTTGGACAACCAAAGACAGAGAAAAATGGTGGTGTTTTATCTGTTGATTTACAAGGAAATCCACTGGAACACTATTATGATGAGGATTTGACAATGGTGTCAAGTGGCATTAAGATTGGTGATCATTTGTACTGTGGCTCTGTTAAGTCTCCGTATATACTACGCCTCAATCTCAAACAATATCCTGCCGTTTAAACTTCATAAACAAAAATGTAAGTGTTTGATTTCAAAAAATAATGGGTGTATTTGTTAGTACAAGTATATTCGTTCAATTTTGCATAAGATTTCCACTATATAAGATGTGTAAGTGTTTTCTTTTTAATTTATTATAAATAATAATAAGAGTCAGCATATGCAACTAAA : GAAAAAATAGATTTATTTAAATATCAAAACTTGA : ATGTCTCTCC</gDNA_template>
            <first_frame> K  F  Y  F  F  V  M  I  R  M  E  T  K  R  N  T  S  Q  H  I  P  S  S  L  L  T  I  C  Y  Y  L  K  C  *  S  F  I  C  S  S  I  H  T  S  P  N  F  F  F  F  F  Y  N  N  N  C  K  Y  D  F  S  L  H  L  S  K  P  Y  F  Y  F  T  N  N  T  R  Y  S  R  Y  G  F  L  S  T  R  F  L  R  P  G  F  L  S  D  P  C  A  L  Y  *  P  A  Y  C  C  T  K  A  Q  *  P  G  A  P  W  L  R  K  H  R  S  *  P  A  I  S  T  R  R  R  S  L  R  S  G  I  G  S  Y  I  H  C  V  C  *  W  V  G  *  K  S  E  S  Q  R  I  G  G  G  F  H  G  G  G  L  G  F  H  R  W  Q  T  S  R  A  C  S  R  T  S  R  R  S  Y  R  C  R  F  R  K   : G  I  I  T  Q  R  Y  F  *  G  *  N  *  S  A  N  R  G  S  *  R  P  E  I  E  I  G  R  R  C  R  R  C  R  G  W  N  Y  I  F  L  R  C  F  L  Q  I  *  Y  R  T  I  H  L  *  F  S  *  R  K  T  P  W  K  I  V  K  L  *  S  I  N  *  T  D  *  N  A  T  *  Q  P  A  F  C  *  W  R  C  S  L  S  R  S  K  L  C  Y  L  L  *  N  S  S  :  E  E  M  Q  K  V  S  Y  K  R  R  K  K  R  I  R  G  Y  V  C  *  *  F  T  W  I  S  *  Q  H  S  L  R  W  *  R  A  L  L  D  C  I  C  L  G  *  F  L  H  N  I  *  I  *  C  V  Q  Q  G  T  L  L  S  H  I  L  F  L  I  T  *  T  G  K  H  I  F  M  G  L  D  P  K  V  P  I  H  Q  K  D  N  G  Y  N  G  E  I  C  W  T  T  K  D  R  E  K  W  W  C  F  I  C  *  F  T  R  K  S  T  G  T  L  L  *  *  G  F  D  N  G  V  K  W  H  *  D  W  *  S  F  V  L  W  L  C  *  V  S  V  Y  T  T  P  Q  S  Q  T  I  S  C  R  L  N  F  I  N  K  N  V  S  V  *  F  Q  K  I  M  G  V  F  V  S  T  S  I  F  V  Q  F  C  I  R  F  P  L  Y  K  M  C  K  C  F  L  F  N  L  L  *  I  I  I  R  V  S  I  C  N  *   : R  K  N  R  F  I  *  I  S  K  L  E :   C  L  S </first_frame>
            <second_frame>  N  F  I  F  L  L  *  *  E  W  K  Q  R  G  I  R  V  N  T  Y  L  L  L  C  *  R  F  V  I  I  S  N  V  N  P  S  S  A  L  L  F  T  L  A  P  I  S  S  S  S  S  T  I  T  T  A  N  M  T  S  P  S  I  F  L  N  P  I  F  I  S  L  I  I  P  V  I  L  G  T  V  F  Y  Q  L  D  S  F  D  P  V  S  Y  P  T  H  V  L  S  T  D  P  P  I  V  A  P  K  R  N  N  Q  V  L  R  G  S  E  N  I  G  V  N  Q  L  L  A  P  E  D  V  A  Y  D  P  E  S  G  V  I  Y  T  A  C  V  D  G  W  V  K  K  V  K  V  N  E  S  A  A  D  S  T  V  E  D  W  V  F  T  G  G  R  P  L  G  L  A  L  G  H  H  G  E  V  I  V  A  D  S  E  K  :  G  L  L  L  N  V  T  S  E  G  E  I  K  V  L  T  E  E  A  E  G  L  K  L  K  L  A  D  A  V  D  V  A  E  D  G  I  I  Y  F  S  D  A  S  Y  K  Y  N  I  E  Q  Y  I  Y  D  F  L  E  G  R  P  H  G  R  L  L  S  Y  D  P  S  T  K  Q  T  K  T  L  L  S  N  L  H  F  A  N  G  V  A  V  S  P  D  Q  N  Y  V  I  F  C  E  T  P  L :   R  K  C  K  K  Y  H  I  K  G  E  K  K  G  S  V  D  M  F  V  D  N  L  P  G  F  P  D  N  I  R  Y  D  G  E  G  H  Y  W  I  A  F  A  S  V  S  F  F  I  T  F  K  F  N  V  F  N  R  V  H  C  S  L  I  F  C  F  *  *  L  E  Q  E  N  T  Y  S  W  D  L  T  L  K  Y  P  F  I  R  K  I  M  A  I  M  V  K  Y  V  G  Q  P  K  T  E  K  N  G  G  V  L  S  V  D  L  Q  G  N  P  L  E  H  Y  Y  D  E  D  L  T  M  V  S  S  G  I  K  I  G  D  H  L  Y  C  G  S  V  K  S  P  Y  I  L  R  L  N  L  K  Q  Y  P  A  V  *  T  S  *  T  K  M  *  V  F  D  F  K  K  *  W  V  Y  L  L  V  Q  V  Y  S  F  N  F  A  *  D  F  H  Y  I  R  C  V  S  V  F  F  L  I  Y  Y  K  *  *  *  E  S  A  Y  A  T  K  :  E  K  I  D  L  F  K  Y  Q  N  L   : N  V  S   </second_frame>
            <third_frame>   I  L  F  F  C  Y  D  K  N  G  N  K  E  E  Y  E  S  T  H  T  F  F  F  A  D  D  L  L  L  S  Q  M  L  I  L  H  L  L  F  Y  S  H  *  P  Q  F  L  L  L  L  L  Q  *  Q  L  Q  I  *  L  L  P  P  S  F  *  T  L  F  L  F  H  *  *  Y  P  L  F  *  V  R  F  S  I  N  S  I  P  S  T  R  F  L  I  R  P  M  C  S  L  L  T  R  L  L  L  H  Q  S  A  I  T  R  C  S  V  A  P  K  T  S  E  L  T  S  Y  *  H  P  K  T  *  P  T  I  R  N  R  E  L  Y  T  L  R  V  L  M  G  G  L  K  K  *  K  S  T  N  R  R  R  I  P  R  W  R  I  G  F  S  P  V  A  D  L  S  G  L  L  *  D  I  T  A  K  L  S  L  Q  I  Q  K  R :   D  Y  Y  S  T  L  L  L  R  V  K  L  K  C  *  Q  R  K  L  K  A  *  N  *  N  W  Q  T  L  *  T  L  Q  R  M  E  L  Y  I  S  P  M  L  L  T  N  I  I  S  N  N  T  F  M  I  F  L  K  E  D  P  M  E  D  C  *  V  M  I  H  Q  L  N  R  L  K  R  Y  L  A  T  C  I  L  L  M  A  L  Q  S  L  Q  I  K  I  M  L  S  S  V  K  L  L   : *  G  N  A  K  S  I  I  *  K  A  K  K  K  D  P  W  I  C  L  L  I  I  Y  L  D  F  L  T  T  F  V  T  M  V  K  G  I  I  G  L  H  L  P  R  L  V  S  S  *  H  L  N  L  M  C  S  T  G  Y  T  A  L  S  Y  F  V  S  D  N  L  N  R  K  T  H  I  H  G  T  *  P  *  S  T  H  S  S  E  R  *  W  L  *  W  *  N  M  L  D  N  Q  R  Q  R  K  M  V  V  F  Y  L  L  I  Y  K  E  I  H  W  N  T  I  M  M  R  I  *  Q  W  C  Q  V  A  L  R  L  V  I  I  C  T  V  A  L  L  S  L  R  I  Y  Y  A  S  I  S  N  N  I  L  P  F  K  L  H  K  Q  K  C  K  C  L  I  S  K  N  N  G  C  I  C  *  Y  K  Y  I  R  S  I  L  H  K  I  S  T  I  *  D  V  *  V  F  S  F  *  F  I  I  N  N  N  K  S  Q  H  M  Q  L  K :   K  K  *  I  Y  L  N  I  K  T  *  :  M  S  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0031D11.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77776" stop="77279"/>
                    <exon start="75975" stop="75665"/>
                    <exon start="75588" stop="75384"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1011</number_coding_nucleotides>
                  <number_encoded_amino_acids>337</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RFVIISNVNPSSALLFTLAPISSSSSTITTANMTSPSIFLNPIFISLIIPVILGTVFYQLDSFDPVSYPTHVLSTDPPIVAPKRNNQVLRGSENIGVNQLLAPEDVAYDPESGVIYTACVDGWVKKVKVNESAADSTVEDWVFTGGRPLGLALGHHGEVIVADSEKGLLLNVTSEGEIKVLTEEAEGLKLKLADAVDVAEDGIIYFSDASYKYNIEQYIYDFLEGRPHGRLLSYDPSTKQTKTLLSNLHFANGVAVSPDQNYVIFCETPLRKCKKYHIKGEKKGSVDMFVDNLPGFPDNIRYDGEGHYWIAFASVSFFITFKFNVFNRVHCSLIFCF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0031D11.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75380" stop="75102"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>276</number_coding_nucleotides>
                  <number_encoded_amino_acids>92</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LEQENTYSWDLTLKYPFIRKIMAIMVKYVGQPKTEKNGGVLSVDLQGNPLEHYYDEDLTMVSSGIKIGDHLYCGSVKSPYILRLNLKQYPAV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="77852" e_stop="77279"/>
            <exon e_start="75983" e_stop="75665"/>
            <exon e_start="75588" e_stop="75456"/>
            <exon e_start="75371" e_stop="74930"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.000" e_score="0.998"/>
          <exon-intron don_prob="0.996" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="77852" e_stop="77279" e_length="574"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="77278" i_stop="75984" i_length="1295"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="75983" e_stop="75665" e_length="319"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.996">
            <gDNA_intron_boundary i_start="75664" i_stop="75589" i_length="76"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="75588" e_stop="75456" e_length="133"/>
          </exon>
          <intron i_serial="3" don_prob="0.982" acc_prob="0.982">
            <gDNA_intron_boundary i_start="75455" i_stop="75372" i_length="84"/>
          </intron>
          <exon e_serial="4" e_score="0.973">
            <gDNA_exon_boundary e_start="75371" e_stop="74930" e_length="442"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77852" stop="77309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77811" stop="77477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77785" stop="77279"/>
              <exon start="75983" stop="75956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77785" stop="77346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75975" stop="75665"/>
              <exon start="75588" stop="75456"/>
              <exon start="75371" stop="75185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75975" stop="75665"/>
              <exon start="75588" stop="75456"/>
              <exon start="75371" stop="75352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75905" stop="75665"/>
              <exon start="75588" stop="75456"/>
              <exon start="75371" stop="75018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75701" stop="75665"/>
              <exon start="75588" stop="75456"/>
              <exon start="75371" stop="74930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304314" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATTTTATTTTTTTGTTATGATAAGAATGGAAACAAAGAGGAATACGAGTCAACACATACCTTCTTCTTTGCTGACGATTTGTTATTATCTCAAATGTTAATCCTTCATCTGCTCTTCTATTCACACTAGCCCCAATTTCTTCTTCTTCTTCTACAATAACAACTGCAAATATGACTTCTCCCTCCATCTTTCTAAACCCTATTTTTATTTCACTAATAATACCCGTTATTCTAGGTACGGTTTTCTATCAACTCGATTCCTTCGACCCGGTTTCTTATCCGACCCATGTGCTCTCTACTGACCCGCCTATTGTTGCACCAAAGCGCAATAACCAGGTGCTCCGTGGCTCCGAAAACATCGGAGTTAACCAGCTATTAGCACCCGAAGACGTAGCCTACGATCCGGAATCGGGAGTTATATACACTGCGTGTGTTGATGGGTGGGTTAAAAAAGTGAAAGTCAACGAATCGGCGGCGGATTCCACGGTGGAGGATTGGGTTTTCACCGGTGGCAGACCTCTCGGGCTTGCTCTAGGACATCACGGCGAAGTTATCGTTGCAGATTCAGAAAAG : TGTGACAGGGATTATTACTCAACGTTACTTCTGAGGGTGAAATTAAAGTGCTAACAGAGGAAGCTGAAGGCCTGAAATTGAAATTGGCAGACGCTGTAGACGTTGCAGAGGATGGAATTATATATTTCTCCGATGCTTCTTACAAATATAATATCGAACAATACATTTATGATTTTCTTGAAGGAAGACCCCATGGAAGATTGTTAAGTTATGATCCATCAACTAAACAGACTAAAACGCTACTTAGCAACCTGCATTTTGCTAATGGCGTTGCAGTCTCTCCAGATCAAAATTATGTTATCTTCTGTGAAACTCCTCT : GAGGAAATGCAAAAAGTATCATATAAAAGGCGAAAAAAAAGGATCCGTGGATATGTTTGTTGATAATTTACCTGGATTTCCTGACAACATTCGTTACGATGGTGAAGGGCATTATTGGATTGCATTTGCCTCG : GAAAACACATATTCATGGGACTTGACCCTAAAGTACCCATTCATCAGAAAGATAATGGCTATAATGGTGAAATATGTTGGACAACCAAAGACAGAGAAAAATGGTGGTGTTTTATCTGTTGATTTACAAGGAAATCCACTGGAACACTATTATGATGAGGATTTGACAATGGTGTCAAGTGGCATTAAGATTGGTGATCATTTGTACTGTGGCTCTGTTAAGTCTCCGTATATACTACGCCTCAATCTCAAACAATATCCTGCCGTTTAAACTTCATAAACAAAAATGTAAGTGTTTGATTTCAAAAAATAATGGGTGTATTTGTTAGTACAAGTATATTCGTTCAATTTTGCATAAGATTTCCACTATATAAGATGTGTAAGTGTTTTCTTTTTAATTTATTATAAATAATAATAAGAGTCAGCATATGCAACTAAATCAT</gDNA_template>
            <first_frame> K  F  Y  F  F  V  M  I  R  M  E  T  K  R  N  T  S  Q  H  I  P  S  S  L  L  T  I  C  Y  Y  L  K  C  *  S  F  I  C  S  S  I  H  T  S  P  N  F  F  F  F  F  Y  N  N  N  C  K  Y  D  F  S  L  H  L  S  K  P  Y  F  Y  F  T  N  N  T  R  Y  S  R  Y  G  F  L  S  T  R  F  L  R  P  G  F  L  S  D  P  C  A  L  Y  *  P  A  Y  C  C  T  K  A  Q  *  P  G  A  P  W  L  R  K  H  R  S  *  P  A  I  S  T  R  R  R  S  L  R  S  G  I  G  S  Y  I  H  C  V  C  *  W  V  G  *  K  S  E  S  Q  R  I  G  G  G  F  H  G  G  G  L  G  F  H  R  W  Q  T  S  R  A  C  S  R  T  S  R  R  S  Y  R  C  R  F  R  K   : V  *  Q  G  L  L  L  N  V  T  S  E  G  E  I  K  V  L  T  E  E  A  E  G  L  K  L  K  L  A  D  A  V  D  V  A  E  D  G  I  I  Y  F  S  D  A  S  Y  K  Y  N  I  E  Q  Y  I  Y  D  F  L  E  G  R  P  H  G  R  L  L  S  Y  D  P  S  T  K  Q  T  K  T  L  L  S  N  L  H  F  A  N  G  V  A  V  S  P  D  Q  N  Y  V  I  F  C  E  T  P  L :   R  K  C  K  K  Y  H  I  K  G  E  K  K  G  S  V  D  M  F  V  D  N  L  P  G  F  P  D  N  I  R  Y  D  G  E  G  H  Y  W  I  A  F  A  S  :  E  N  T  Y  S  W  D  L  T  L  K  Y  P  F  I  R  K  I  M  A  I  M  V  K  Y  V  G  Q  P  K  T  E  K  N  G  G  V  L  S  V  D  L  Q  G  N  P  L  E  H  Y  Y  D  E  D  L  T  M  V  S  S  G  I  K  I  G  D  H  L  Y  C  G  S  V  K  S  P  Y  I  L  R  L  N  L  K  Q  Y  P  A  V  *  T  S  *  T  K  M  *  V  F  D  F  K  K  *  W  V  Y  L  L  V  Q  V  Y  S  F  N  F  A  *  D  F  H  Y  I  R  C  V  S  V  F  F  L  I  Y  Y  K  *  *  *  E  S  A  Y  A  T  K  S  </first_frame>
            <second_frame>  N  F  I  F  L  L  *  *  E  W  K  Q  R  G  I  R  V  N  T  Y  L  L  L  C  *  R  F  V  I  I  S  N  V  N  P  S  S  A  L  L  F  T  L  A  P  I  S  S  S  S  S  T  I  T  T  A  N  M  T  S  P  S  I  F  L  N  P  I  F  I  S  L  I  I  P  V  I  L  G  T  V  F  Y  Q  L  D  S  F  D  P  V  S  Y  P  T  H  V  L  S  T  D  P  P  I  V  A  P  K  R  N  N  Q  V  L  R  G  S  E  N  I  G  V  N  Q  L  L  A  P  E  D  V  A  Y  D  P  E  S  G  V  I  Y  T  A  C  V  D  G  W  V  K  K  V  K  V  N  E  S  A  A  D  S  T  V  E  D  W  V  F  T  G  G  R  P  L  G  L  A  L  G  H  H  G  E  V  I  V  A  D  S  E  K  :  C  D  R  D  Y  Y  S  T  L  L  L  R  V  K  L  K  C  *  Q  R  K  L  K  A  *  N  *  N  W  Q  T  L  *  T  L  Q  R  M  E  L  Y  I  S  P  M  L  L  T  N  I  I  S  N  N  T  F  M  I  F  L  K  E  D  P  M  E  D  C  *  V  M  I  H  Q  L  N  R  L  K  R  Y  L  A  T  C  I  L  L  M  A  L  Q  S  L  Q  I  K  I  M  L  S  S  V  K  L  L   : *  G  N  A  K  S  I  I  *  K  A  K  K  K  D  P  W  I  C  L  L  I  I  Y  L  D  F  L  T  T  F  V  T  M  V  K  G  I  I  G  L  H  L  P  R :   K  T  H  I  H  G  T  *  P  *  S  T  H  S  S  E  R  *  W  L  *  W  *  N  M  L  D  N  Q  R  Q  R  K  M  V  V  F  Y  L  L  I  Y  K  E  I  H  W  N  T  I  M  M  R  I  *  Q  W  C  Q  V  A  L  R  L  V  I  I  C  T  V  A  L  L  S  L  R  I  Y  Y  A  S  I  S  N  N  I  L  P  F  K  L  H  K  Q  K  C  K  C  L  I  S  K  N  N  G  C  I  C  *  Y  K  Y  I  R  S  I  L  H  K  I  S  T  I  *  D  V  *  V  F  S  F  *  F  I  I  N  N  N  K  S  Q  H  M  Q  L  N  H </second_frame>
            <third_frame>   I  L  F  F  C  Y  D  K  N  G  N  K  E  E  Y  E  S  T  H  T  F  F  F  A  D  D  L  L  L  S  Q  M  L  I  L  H  L  L  F  Y  S  H  *  P  Q  F  L  L  L  L  L  Q  *  Q  L  Q  I  *  L  L  P  P  S  F  *  T  L  F  L  F  H  *  *  Y  P  L  F  *  V  R  F  S  I  N  S  I  P  S  T  R  F  L  I  R  P  M  C  S  L  L  T  R  L  L  L  H  Q  S  A  I  T  R  C  S  V  A  P  K  T  S  E  L  T  S  Y  *  H  P  K  T  *  P  T  I  R  N  R  E  L  Y  T  L  R  V  L  M  G  G  L  K  K  *  K  S  T  N  R  R  R  I  P  R  W  R  I  G  F  S  P  V  A  D  L  S  G  L  L  *  D  I  T  A  K  L  S  L  Q  I  Q  K  S :   V  T  G  I  I  T  Q  R  Y  F  *  G  *  N  *  S  A  N  R  G  S  *  R  P  E  I  E  I  G  R  R  C  R  R  C  R  G  W  N  Y  I  F  L  R  C  F  L  Q  I  *  Y  R  T  I  H  L  *  F  S  *  R  K  T  P  W  K  I  V  K  L  *  S  I  N  *  T  D  *  N  A  T  *  Q  P  A  F  C  *  W  R  C  S  L  S  R  S  K  L  C  Y  L  L  *  N  S  S  :  E  E  M  Q  K  V  S  Y  K  R  R  K  K  R  I  R  G  Y  V  C  *  *  F  T  W  I  S  *  Q  H  S  L  R  W  *  R  A  L  L  D  C  I  C  L   : G  K  H  I  F  M  G  L  D  P  K  V  P  I  H  Q  K  D  N  G  Y  N  G  E  I  C  W  T  T  K  D  R  E  K  W  W  C  F  I  C  *  F  T  R  K  S  T  G  T  L  L  *  *  G  F  D  N  G  V  K  W  H  *  D  W  *  S  F  V  L  W  L  C  *  V  S  V  Y  T  T  P  Q  S  Q  T  I  S  C  R  L  N  F  I  N  K  N  V  S  V  *  F  Q  K  I  M  G  V  F  V  S  T  S  I  F  V  Q  F  C  I  R  F  P  L  Y  K  M  C  K  C  F  L  F  N  L  L  *  I  I  I  R  V  S  I  C  N  *  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0031D11.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75978" stop="75665"/>
                    <exon start="75588" stop="75456"/>
                    <exon start="75371" stop="75102"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>714</number_coding_nucleotides>
                  <number_encoded_amino_acids>238</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGLLLNVTSEGEIKVLTEEAEGLKLKLADAVDVAEDGIIYFSDASYKYNIEQYIYDFLEGRPHGRLLSYDPSTKQTKTLLSNLHFANGVAVSPDQNYVIFCETPLRKCKKYHIKGEKKGSVDMFVDNLPGFPDNIRYDGEGHYWIAFASENTYSWDLTLKYPFIRKIMAIMVKYVGQPKTEKNGGVLSVDLQGNPLEHYYDEDLTMVSSGIKIGDHLYCGSVKSPYILRLNLKQYPAV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0031D11.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77750" stop="77550"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFICSSIHTSPNFFFFFYNNNCKYDFSLHLSKPYFYFTNNTRYSRYGFLSTRFLRPGFLSDPCALY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="85226" PGL_stop="84732"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85226" e_stop="84732"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="85226" e_stop="84732" e_length="495"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85226" stop="84732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85226" stop="84734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356228" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAGGATCGCGCTGTTGACGTAGTCAAAACTGATGGGAAAACTATAAGCACACTTGAAATTGAAGGTGTTTTGATTAGGCATCCTATGGTTTTGGAAGTTGCAGTTGTAGCAAGATGTGATGATGTTCTTGGAGAGACCCCTTGTGCTTTTGTGAAACTGAAAAAAGGGTGTTTTATGACTGATGAAGAAATTATCAAGTTTTGTGAAGATTGGCTGCAGGATTACATGGTTCCTAAGGCAGTAATCTTTGGTGATTTACCATTCAATTCTTCAGGGAAAATACAGAAATTTATACTTAGGGACAAGGTCAACAATGCAATGAAGTTGTGTCTACAAGTTGGGTGCAACTCAGTTGGCGAGCTGCCCACACCTTCATCCTAGTGGTGGGGATTCGAATTTCGATATATTCCCTCCCCACCATAAAAAAAAAAAAAACATTGAAATATGCATGCCTTAATAAAAATTGTCCTTTTTCAGTCTTGCAAAAACATTGC</gDNA_template>
            <first_frame> E  G  S  R  C  *  R  S  Q  N  *  W  E  N  Y  K  H  T  *  N  *  R  C  F  D  *  A  S  Y  G  F  G  S  C  S  C  S  K  M  *  *  C  S  W  R  D  P  L  C  F  C  E  T  E  K  R  V  F  Y  D  *  *  R  N  Y  Q  V  L  *  R  L  A  A  G  L  H  G  S  *  G  S  N  L  W  *  F  T  I  Q  F  F  R  E  N  T  E  I  Y  T  *  G  Q  G  Q  Q  C  N  E  V  V  S  T  S  W  V  Q  L  S  W  R  A  A  H  T  F  I  L  V  V  G  I  R  I  S  I  Y  S  L  P  T  I  K  K  K  K  T  L  K  Y  A  C  L  N  K  N  C  P  F  S  V  L  Q  K  H  C </first_frame>
            <second_frame>  K  D  R  A  V  D  V  V  K  T  D  G  K  T  I  S  T  L  E  I  E  G  V  L  I  R  H  P  M  V  L  E  V  A  V  V  A  R  C  D  D  V  L  G  E  T  P  C  A  F  V  K  L  K  K  G  C  F  M  T  D  E  E  I  I  K  F  C  E  D  W  L  Q  D  Y  M  V  P  K  A  V  I  F  G  D  L  P  F  N  S  S  G  K  I  Q  K  F  I  L  R  D  K  V  N  N  A  M  K  L  C  L  Q  V  G  C  N  S  V  G  E  L  P  T  P  S  S  *  W  W  G  F  E  F  R  Y  I  P  S  P  P  *  K  K  K  K  H  *  N  M  H  A  L  I  K  I  V  L  F  Q  S  C  K  N  I   </second_frame>
            <third_frame>   R  I  A  L  L  T  *  S  K  L  M  G  K  L  *  A  H  L  K  L  K  V  F  *  L  G  I  L  W  F  W  K  L  Q  L  *  Q  D  V  M  M  F  L  E  R  P  L  V  L  L  *  N  *  K  K  G  V  L  *  L  M  K  K  L  S  S  F  V  K  I  G  C  R  I  T  W  F  L  R  Q  *  S  L  V  I  Y  H  S  I  L  Q  G  K  Y  R  N  L  Y  L  G  T  R  S  T  M  Q  *  S  C  V  Y  K  L  G  A  T  Q  L  A  S  C  P  H  L  H  P  S  G  G  D  S  N  F  D  I  F  P  P  H  H  K  K  K  K  N  I  E  I  C  M  P  *  *  K  L  S  F  F  S  L  A  K  T  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0031D11.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85225" stop="84845"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>378</number_coding_nucleotides>
                  <number_encoded_amino_acids>126</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KDRAVDVVKTDGKTISTLEIEGVLIRHPMVLEVAVVARCDDVLGETPCAFVKLKKGCFMTDEEIIKFCEDWLQDYMVPKAVIFGDLPFNSSGKIQKFILRDKVNNAMKLCLQVGCNSVGELPTPSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="89123" PGL_stop="85807"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89123" e_stop="88933"/>
            <exon e_start="86344" e_stop="85807"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="89123" e_stop="88933" e_length="191"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="88932" i_stop="86345" i_length="2588"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="86344" e_stop="85807" e_length="538"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89123" stop="88933"/>
              <exon start="86344" stop="85807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212743" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATTGGTAGTTTGCCCTGCAAACCACGTACCATTGACACCTCTAAGTTTTTTGGAACGTGCTGCATTTGTTTACCGCAAAAACATAGCCTTAATTTATGGAAACATAAGTTATTCATGGGAAGAATTACATGGAAGATGTATCAACCTTGCATCTGCTCTTTCTCAACTTGGAGTTTCATCTGGTGATGTT : GTGGCAACGGTGGCACCTAATGTAGCAGCACAATATGAGCTACATTTTGGTGTACCAATGGCTGGTGCAGTCCTTTCTGCACTCAACACAATGCTAGATGCCACCACATTGGCTCAAAAACTCCAACAATTGGAGGCCAAAATCATTTTTGTATACTCTGATTTCATTGAACTAGTGCTTCAAGCACTTGCCATTCTTCAAGAAAAAGACAAATCTTGTCTAATTGTCTTAATCCATGAAGGAAACAATGTAACAAAACCACCAGTGTCATCATCAGGGCCATCAAAAATTCTGGATTACCAAACACTTCTTGAAATGGGGCAGCCTAATTTCAAGATTATGCATCCGAAAAATGAATTTGATCCGATTTCGATCAATTTTACTTCTGGATCAACAGGGAAGCCTAAAGGGGCTGTGTATAGCCATAGAGCTGCTTATTTGAATACAATTGCTGACATTTTTCGATACGAAATGGGAAAAAGCCCTGTTTTTCTCTGGACAGTGGATATGTTTCGATGCAACGGGTGGTGTCTCCCCT</gDNA_template>
            <first_frame> D  W  *  F  A  L  Q  T  T  Y  H  *  H  L  *  V  F  W  N  V  L  H  L  F  T  A  K  T  *  P  *  F  M  E  T  *  V  I  H  G  K  N  Y  M  E  D  V  S  T  L  H  L  L  F  L  N  L  E  F  H  L  V  M  L :   W  Q  R  W  H  L  M  *  Q  H  N  M  S  Y  I  L  V  Y  Q  W  L  V  Q  S  F  L  H  S  T  Q  C  *  M  P  P  H  W  L  K  N  S  N  N  W  R  P  K  S  F  L  Y  T  L  I  S  L  N  *  C  F  K  H  L  P  F  F  K  K  K  T  N  L  V  *  L  S  *  S  M  K  E  T  M  *  Q  N  H  Q  C  H  H  Q  G  H  Q  K  F  W  I  T  K  H  F  L  K  W  G  S  L  I  S  R  L  C  I  R  K  M  N  L  I  R  F  R  S  I  L  L  L  D  Q  Q  G  S  L  K  G  L  C  I  A  I  E  L  L  I  *  I  Q  L  L  T  F  F  D  T  K  W  E  K  A  L  F  F  S  G  Q  W  I  C  F  D  A  T  G  G  V  S  P </first_frame>
            <second_frame>  I  G  S  L  P  C  K  P  R  T  I  D  T  S  K  F  F  G  T  C  C  I  C  L  P  Q  K  H  S  L  N  L  W  K  H  K  L  F  M  G  R  I  T  W  K  M  Y  Q  P  C  I  C  S  F  S  T  W  S  F  I  W  *  C   : C  G  N  G  G  T  *  C  S  S  T  I  *  A  T  F  W  C  T  N  G  W  C  S  P  F  C  T  Q  H  N  A  R  C  H  H  I  G  S  K  T  P  T  I  G  G  Q  N  H  F  C  I  L  *  F  H  *  T  S  A  S  S  T  C  H  S  S  R  K  R  Q  I  L  S  N  C  L  N  P  *  R  K  Q  C  N  K  T  T  S  V  I  I  R  A  I  K  N  S  G  L  P  N  T  S  *  N  G  A  A  *  F  Q  D  Y  A  S  E  K  *  I  *  S  D  F  D  Q  F  Y  F  W  I  N  R  E  A  *  R  G  C  V  *  P  *  S  C  L  F  E  Y  N  C  *  H  F  S  I  R  N  G  K  K  P  C  F  S  L  D  S  G  Y  V  S  M  Q  R  V  V  S  P   </second_frame>
            <third_frame>   L  V  V  C  P  A  N  H  V  P  L  T  P  L  S  F  L  E  R  A  A  F  V  Y  R  K  N  I  A  L  I  Y  G  N  I  S  Y  S  W  E  E  L  H  G  R  C  I  N  L  A  S  A  L  S  Q  L  G  V  S  S  G  D  V  :  V  A  T  V  A  P  N  V  A  A  Q  Y  E  L  H  F  G  V  P  M  A  G  A  V  L  S  A  L  N  T  M  L  D  A  T  T  L  A  Q  K  L  Q  Q  L  E  A  K  I  I  F  V  Y  S  D  F  I  E  L  V  L  Q  A  L  A  I  L  Q  E  K  D  K  S  C  L  I  V  L  I  H  E  G  N  N  V  T  K  P  P  V  S  S  S  G  P  S  K  I  L  D  Y  Q  T  L  L  E  M  G  Q  P  N  F  K  I  M  H  P  K  N  E  F  D  P  I  S  I  N  F  T  S  G  S  T  G  K  P  K  G  A  V  Y  S  H  R  A  A  Y  L  N  T  I  A  D  I  F  R  Y  E  M  G  K  S  P  V  F  L  W  T  V  D  M  F  R  C  N  G  W  C  L  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0031D11.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89121" stop="88933"/>
                    <exon start="86344" stop="85808"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>726</number_coding_nucleotides>
                  <number_encoded_amino_acids>242</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVVCPANHVPLTPLSFLERAAFVYRKNIALIYGNISYSWEELHGRCINLASALSQLGVSSGDVVATVAPNVAAQYELHFGVPMAGAVLSALNTMLDATTLAQKLQQLEAKIIFVYSDFIELVLQALAILQEKDKSCLIVLIHEGNNVTKPPVSSSGPSKILDYQTLLEMGQPNFKIMHPKNEFDPISINFTSGSTGKPKGAVYSHRAAYLNTIADIFRYEMGKSPVFLWTVDMFRCNGWCLP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="94177" PGL_stop="95280"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94177" e_stop="94482"/>
            <exon e_start="94556" e_stop="94652"/>
            <exon e_start="94714" e_stop="95280"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="94177" e_stop="94482" e_length="306"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="94483" i_stop="94555" i_length="73"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="94556" e_stop="94652" e_length="97"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.997">
            <gDNA_intron_boundary i_start="94653" i_stop="94713" i_length="61"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="94714" e_stop="95280" e_length="567"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94177" stop="94482"/>
              <exon start="94556" stop="94652"/>
              <exon start="94714" stop="95212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719348" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94189" stop="94482"/>
              <exon start="94556" stop="94652"/>
              <exon start="94714" stop="94899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94190" stop="94482"/>
              <exon start="94556" stop="94652"/>
              <exon start="94714" stop="95213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E624600" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94191" stop="94482"/>
              <exon start="94556" stop="94652"/>
              <exon start="94714" stop="94841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94191" stop="94482"/>
              <exon start="94556" stop="94652"/>
              <exon start="94714" stop="94758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94194" stop="94482"/>
              <exon start="94556" stop="94652"/>
              <exon start="94714" stop="95268"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94195" stop="94482"/>
              <exon start="94556" stop="94652"/>
              <exon start="94714" stop="94978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94195" stop="94482"/>
              <exon start="94556" stop="94652"/>
              <exon start="94714" stop="94978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94195" stop="94482"/>
              <exon start="94556" stop="94652"/>
              <exon start="94714" stop="94881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294352" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94195" stop="94482"/>
              <exon start="94556" stop="94652"/>
              <exon start="94714" stop="94881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94195" stop="94482"/>
              <exon start="94556" stop="94652"/>
              <exon start="94714" stop="94855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94195" stop="94482"/>
              <exon start="94556" stop="94652"/>
              <exon start="94714" stop="94836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293303" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94195" stop="94482"/>
              <exon start="94556" stop="94652"/>
              <exon start="94714" stop="94816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94196" stop="94482"/>
              <exon start="94556" stop="94652"/>
              <exon start="94714" stop="94986"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373445" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94196" stop="94482"/>
              <exon start="94556" stop="94652"/>
              <exon start="94714" stop="94974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94196" stop="94482"/>
              <exon start="94556" stop="94652"/>
              <exon start="94714" stop="94958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94196" stop="94482"/>
              <exon start="94556" stop="94652"/>
              <exon start="94714" stop="94836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298472" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94196" stop="94482"/>
              <exon start="94556" stop="94652"/>
              <exon start="94714" stop="94803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94196" stop="94482"/>
              <exon start="94556" stop="94652"/>
              <exon start="94714" stop="94757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94196" stop="94482"/>
              <exon start="94556" stop="94567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94199" stop="94482"/>
              <exon start="94556" stop="94652"/>
              <exon start="94714" stop="94965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94200" stop="94482"/>
              <exon start="94556" stop="94652"/>
              <exon start="94714" stop="95046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94200" stop="94482"/>
              <exon start="94556" stop="94652"/>
              <exon start="94714" stop="94981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94200" stop="94482"/>
              <exon start="94556" stop="94652"/>
              <exon start="94714" stop="94975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94200" stop="94482"/>
              <exon start="94556" stop="94652"/>
              <exon start="94714" stop="94963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94201" stop="94482"/>
              <exon start="94556" stop="94652"/>
              <exon start="94714" stop="95081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94201" stop="94482"/>
              <exon start="94556" stop="94652"/>
              <exon start="94714" stop="95075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94201" stop="94482"/>
              <exon start="94556" stop="94652"/>
              <exon start="94714" stop="95043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94201" stop="94482"/>
              <exon start="94556" stop="94652"/>
              <exon start="94714" stop="94943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94201" stop="94482"/>
              <exon start="94556" stop="94652"/>
              <exon start="94714" stop="94840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94202" stop="94482"/>
              <exon start="94556" stop="94652"/>
              <exon start="94714" stop="94818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94202" stop="94482"/>
              <exon start="94556" stop="94652"/>
              <exon start="94714" stop="94809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94202" stop="94467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94205" stop="94482"/>
              <exon start="94556" stop="94652"/>
              <exon start="94714" stop="95102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94207" stop="94482"/>
              <exon start="94556" stop="94652"/>
              <exon start="94714" stop="94910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94211" stop="94482"/>
              <exon start="94556" stop="94652"/>
              <exon start="94714" stop="95063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403356" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94219" stop="94482"/>
              <exon start="94556" stop="94652"/>
              <exon start="94714" stop="94725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402275" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94222" stop="94386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338705" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94231" stop="94482"/>
              <exon start="94556" stop="94652"/>
              <exon start="94714" stop="94731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400894" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94329" stop="94482"/>
              <exon start="94556" stop="94652"/>
              <exon start="94714" stop="94911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94346" stop="94482"/>
              <exon start="94556" stop="94652"/>
              <exon start="94714" stop="95277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390129" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94449" stop="94482"/>
              <exon start="94556" stop="94652"/>
              <exon start="94714" stop="95270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94474" stop="94482"/>
              <exon start="94556" stop="94652"/>
              <exon start="94714" stop="95279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94563" stop="94652"/>
              <exon start="94714" stop="95249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94569" stop="94652"/>
              <exon start="94714" stop="95233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94642" stop="94652"/>
              <exon start="94714" stop="95280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94651" stop="94652"/>
              <exon start="94714" stop="95253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94727" stop="95277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390881" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94792" stop="95270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292052" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94792" stop="95255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359301" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94819" stop="95275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94888" stop="95249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281913" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAACTGAAAAAGCCAGAGGAAAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATG : GTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACA : CCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCGAATACTGCAGCGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGTTGAATGTTCCTACTGGTGAAAATTTGGACTGTAACAATCAAAAGAACTTCGCCCAGGGCTAAGCGTCTTTATTTATATATAGAGAGAGAATGCAAATTATGTTTATGTATTACGTTGTGAAGTCTATAAGTTATATTTGGATGTAATCAATAAGGGGATTCTGTATGCCCATTTAGAAAAATGGAAGTTTATTTTCAGAAATACTAAAGTTATATGATTTTGATCTTTTGTTATAAATTATGTTGAA</gDNA_template>
            <first_frame> Q  L  K  K  P  E  E  K  *  S  S  I  L  Y  H  P  L  H  C  L  V  S  F  S  C  S  *  Q  V  L  *  H  K  M  P  V  P  L  *  R  G  N  C  S  N  K  C  *  V  L  G  T  M  T  H  V  L  P  K  D  S  T  L  M  M  H  S  *  L  Q  P  I  R  F  Q  V  L  V  L  L  V  M  I  L  H  V  R  R  K  L  L  P  F  S  V  K  H  L  T  K  L  M  :  V  V  V  Q  E  H  S  L  E  D  I  A  L  L  S  K  *  S  S  Q  T  D  T  M  A  E  D  L  S  N  *  H   : T  N  L  T  T  N  E  L  D  K  V  L  V  L  D  K  S  *  *  T  T  L  I  *  L  R  Q  I  L  *  Y  H  S  K  Q  Q  Y  G  S  G  *  Q  N  R  I  I  N  H  H  A  T  T  L  S  L  D  N  G  R  H  P  L  K  I  Q  Q  L  I  E  F  Q  G  T  V  S  L  P  T  S  L  T  V  N  L  N  V  G  W  V  R  I  L  Q  R  K  V  E  L  D  F  T  G  G  I  V  V  C  *  M  F  L  L  V  K  I  W  T  V  T  I  K  R  T  S  P  R  A  K  R  L  Y  L  Y  I  E  R  E  C  K  L  C  L  C  I  T  L  *  S  L  *  V  I  F  G  C  N  Q  *  G  D  S  V  C  P  F  R  K  M  E  V  Y  F  Q  K  Y  *  S  Y  M  I  L  I  F  C  Y  K  L  C  *  </first_frame>
            <second_frame>  N  *  K  S  Q  R  K  N  E  V  Q  Y  C  I  T  R  C  T  V  L  S  L  F  L  V  P  N  R  Y  F  S  T  K  C  R  F  H  C  N  A  G  I  V  R  T  N  A  E  F  *  E  Q  *  R  M  S  C  Q  R  I  L  H  L  *  C  I  H  S  C  S  Q  F  V  S  R  F  W  Y  C  W  *  *  Y  C  T  *  E  G  N  C  C  L  F  R  S  N  I  S  R  N  *  W :   W  *  C  R  N  I  H  W  R  I  L  L  C  *  A  N  R  A  V  R  Q  I  L  W  Q  R  T  Y  P  I  D  T  :  P  I  *  L  R  T  S  W  T  R  Y  W  C  W  T  R  V  S  E  Q  P  *  F  S  C  D  R  S  Y  N  I  I  Q  N  S  N  M  V  L  D  D  R  T  G  *  *  T  I  M  P  Q  R  Y  H  W  T  M  D  A  I  P  *  R  Y  S  S  *  *  S  S  R  V  R  C  H  Y  Q  H  H  *  R  S  I  *  M  W  D  G  S  E  Y  C  S  G  K  S  N  W  I  L  Q  E  V  L  W  Y  V  E  C  S  Y  W  *  K  F  G  L  *  Q  S  K  E  L  R  P  G  L  S  V  F  I  Y  I  *  R  E  N  A  N  Y  V  Y  V  L  R  C  E  V  Y  K  L  Y  L  D  V  I  N  K  G  I  L  Y  A  H  L  E  K  W  K  F  I  F  R  N  T  K  V  I  *  F  *  S  F  V  I  N  Y  V  E </second_frame>
            <third_frame>   T  E  K  A  R  G  K  M  K  F  N  I  V  S  P  V  A  L  S  C  L  F  F  L  F  L  T  G  T  L  A  Q  N  A  G  S  I  V  T  R  E  L  F  E  Q  M  L  S  F  R  N  N  D  A  C  P  A  K  G  F  Y  T  Y  D  A  F  I  A  A  A  N  S  F  P  G  F  G  T  A  G  D  D  T  A  R  K  K  E  I  A  A  F  F  G  Q  T  S  H  E  T  N   : G  G  S  A  G  T  F  T  G  G  Y  C  F  V  K  Q  I  E  Q  S  D  R  Y  Y  G  R  G  P  I  Q  L  T  H :   Q  S  N  Y  E  R  A  G  Q  G  I  G  V  G  Q  E  L  V  N  N  P  D  L  V  A  T  D  P  I  I  S  F  K  T  A  I  W  F  W  M  T  E  Q  D  N  K  P  S  C  H  N  V  I  I  G  Q  W  T  P  S  P  K  D  T  A  A  N  R  V  P  G  Y  G  V  I  T  N  I  I  N  G  Q  F  E  C  G  M  G  P  N  T  A  A  E  S  R  I  G  F  Y  R  R  Y  C  G  M  L  N  V  P  T  G  E  N  L  D  C  N  N  Q  K  N  F  A  Q  G  *  A  S  L  F  I  Y  R  E  R  M  Q  I  M  F  M  Y  Y  V  V  K  S  I  S  Y  I  W  M  *  S  I  R  G  F  C  M  P  I  *  K  N  G  S  L  F  S  E  I  L  K  L  Y  D  F  D  L  L  L  *  I  M  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0031D11.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94179" stop="94482"/>
                    <exon start="94556" stop="94652"/>
                    <exon start="94714" stop="95095"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>780</number_coding_nucleotides>
                  <number_encoded_amino_acids>260</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TEKARGKMKFNIVSPVALSCLFFLFLTGTLAQNAGSIVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTAGDDTARKKEIAAFFGQTSHETNGGSAGTFTGGYCFVKQIEQSDRYYGRGPIQLTHQSNYERAGQGIGVGQELVNNPDLVATDPIISFKTAIWFWMTEQDNKPSCHNVIIGQWTPSPKDTAANRVPGYGVITNIINGQFECGMGPNTAAESRIGFYRRYCGMLNVPTGENLDCNNQKNFAQG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="94197" e_stop="95277"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="94197" e_stop="95277" e_length="1081"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94197" stop="94757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201230" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94202" stop="94467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94222" stop="94386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338705" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94727" stop="95277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390881" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94792" stop="95270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292052" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94792" stop="95255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359301" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94819" stop="95275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94888" stop="95249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281913" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAATGAAGTTCAATATTGTATCACCCGTTGCACTGTCTTGTCTCTTTTTCTTGTTCCTAACAGGTACTTTAGCACAAAATGCCGGTTCCATTGTAACGCGGGAATTGTTCGAACAAATGCTGAGTTTTAGGAACAATGACGCATGTCCTGCCAAAGGATTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCGTTTCCAGGTTTTGGTACTGCTGGTGATGATACTGCACGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACATCTCACGAAACTAATGGTAATTTGGATCATCCTTCTTAGCATTGTAATTTATAGGTAACAATTGAATTATATCATTCGCTCTTTTGCAGGTGGTAGTGCAGGAACATTCACTGGAGGATATTGCTTTGTTAAGCAAATAGAGCAGTCAGACAGATACTATGGCAGAGGACCTATCCAATTGACACAGTAAGACAATTCAATAGAATATCAACATTTGGAATCATTAGTAATATTCTTTTTTATGCAGCCAATCTAACTACGAACGAGCTGGACAAGGTATTGGTGTTGGACAAGAGTTAGTGAACAACCCTGATTTAGTTGCGACAGATCCTATAATATCATTCAAAACAGCAATATGGTTCTGGATGACAGAACAGGATAATAAACCATCATGCCACAACGTTATCATTGGACAATGGACGCCATCCCCTAAAGATACAGCAGCTAATAGAGTTCCAGGGTACGGTGTCATTACCAACATCATTAACGGTCAATTTGAATGTGGGATGGGTCCGAATACTGCAGCGGAAAGTCGAATTGGATTTTACAGGAGGTATTGTGGTATGTTGAATGTTCCTACTGGTGAAAATTTGGACTGTAACAATCAAAAGAACTTCGCCCAGGGCTAAGCGTCTTTATTTATATATAGAGAGAGAATGCAAATTATGTTTATGTATTACGTTGTGAAGTCTATAAGTTATATTTGGATGTAATCAATAAGGGGATTCTGTATGCCCATTTAGAAAAATGGAAGTTTATTTTCAGAAATACTAAAGTTATATGATTTTGATCTTTTGTTATAAATTATGTT</gDNA_template>
            <first_frame> K  M  K  F  N  I  V  S  P  V  A  L  S  C  L  F  F  L  F  L  T  G  T  L  A  Q  N  A  G  S  I  V  T  R  E  L  F  E  Q  M  L  S  F  R  N  N  D  A  C  P  A  K  G  F  Y  T  Y  D  A  F  I  A  A  A  N  S  F  P  G  F  G  T  A  G  D  D  T  A  R  K  K  E  I  A  A  F  F  G  Q  T  S  H  E  T  N  G  N  L  D  H  P  S  *  H  C  N  L  *  V  T  I  E  L  Y  H  S  L  F  C  R  W  *  C  R  N  I  H  W  R  I  L  L  C  *  A  N  R  A  V  R  Q  I  L  W  Q  R  T  Y  P  I  D  T  V  R  Q  F  N  R  I  S  T  F  G  I  I  S  N  I  L  F  Y  A  A  N  L  T  T  N  E  L  D  K  V  L  V  L  D  K  S  *  *  T  T  L  I  *  L  R  Q  I  L  *  Y  H  S  K  Q  Q  Y  G  S  G  *  Q  N  R  I  I  N  H  H  A  T  T  L  S  L  D  N  G  R  H  P  L  K  I  Q  Q  L  I  E  F  Q  G  T  V  S  L  P  T  S  L  T  V  N  L  N  V  G  W  V  R  I  L  Q  R  K  V  E  L  D  F  T  G  G  I  V  V  C  *  M  F  L  L  V  K  I  W  T  V  T  I  K  R  T  S  P  R  A  K  R  L  Y  L  Y  I  E  R  E  C  K  L  C  L  C  I  T  L  *  S  L  *  V  I  F  G  C  N  Q  *  G  D  S  V  C  P  F  R  K  M  E  V  Y  F  Q  K  Y  *  S  Y  M  I  L  I  F  C  Y  K  L  C  </first_frame>
            <second_frame>  K  *  S  S  I  L  Y  H  P  L  H  C  L  V  S  F  S  C  S  *  Q  V  L  *  H  K  M  P  V  P  L  *  R  G  N  C  S  N  K  C  *  V  L  G  T  M  T  H  V  L  P  K  D  S  T  L  M  M  H  S  *  L  Q  P  I  R  F  Q  V  L  V  L  L  V  M  I  L  H  V  R  R  K  L  L  P  F  S  V  K  H  L  T  K  L  M  V  I  W  I  I  L  L  S  I  V  I  Y  R  *  Q  L  N  Y  I  I  R  S  F  A  G  G  S  A  G  T  F  T  G  G  Y  C  F  V  K  Q  I  E  Q  S  D  R  Y  Y  G  R  G  P  I  Q  L  T  Q  *  D  N  S  I  E  Y  Q  H  L  E  S  L  V  I  F  F  F  M  Q  P  I  *  L  R  T  S  W  T  R  Y  W  C  W  T  R  V  S  E  Q  P  *  F  S  C  D  R  S  Y  N  I  I  Q  N  S  N  M  V  L  D  D  R  T  G  *  *  T  I  M  P  Q  R  Y  H  W  T  M  D  A  I  P  *  R  Y  S  S  *  *  S  S  R  V  R  C  H  Y  Q  H  H  *  R  S  I  *  M  W  D  G  S  E  Y  C  S  G  K  S  N  W  I  L  Q  E  V  L  W  Y  V  E  C  S  Y  W  *  K  F  G  L  *  Q  S  K  E  L  R  P  G  L  S  V  F  I  Y  I  *  R  E  N  A  N  Y  V  Y  V  L  R  C  E  V  Y  K  L  Y  L  D  V  I  N  K  G  I  L  Y  A  H  L  E  K  W  K  F  I  F  R  N  T  K  V  I  *  F  *  S  F  V  I  N  Y  V </second_frame>
            <third_frame>   N  E  V  Q  Y  C  I  T  R  C  T  V  L  S  L  F  L  V  P  N  R  Y  F  S  T  K  C  R  F  H  C  N  A  G  I  V  R  T  N  A  E  F  *  E  Q  *  R  M  S  C  Q  R  I  L  H  L  *  C  I  H  S  C  S  Q  F  V  S  R  F  W  Y  C  W  *  *  Y  C  T  *  E  G  N  C  C  L  F  R  S  N  I  S  R  N  *  W  *  F  G  S  S  F  L  A  L  *  F  I  G  N  N  *  I  I  S  F  A  L  L  Q  V  V  V  Q  E  H  S  L  E  D  I  A  L  L  S  K  *  S  S  Q  T  D  T  M  A  E  D  L  S  N  *  H  S  K  T  I  Q  *  N  I  N  I  W  N  H  *  *  Y  S  F  L  C  S  Q  S  N  Y  E  R  A  G  Q  G  I  G  V  G  Q  E  L  V  N  N  P  D  L  V  A  T  D  P  I  I  S  F  K  T  A  I  W  F  W  M  T  E  Q  D  N  K  P  S  C  H  N  V  I  I  G  Q  W  T  P  S  P  K  D  T  A  A  N  R  V  P  G  Y  G  V  I  T  N  I  I  N  G  Q  F  E  C  G  M  G  P  N  T  A  A  E  S  R  I  G  F  Y  R  R  Y  C  G  M  L  N  V  P  T  G  E  N  L  D  C  N  N  Q  K  N  F  A  Q  G  *  A  S  L  F  I  Y  R  E  R  M  Q  I  M  F  M  Y  Y  V  V  K  S  I  S  Y  I  W  M  *  S  I  R  G  F  C  M  P  I  *  K  N  G  S  L  F  S  E  I  L  K  L  Y  D  F  D  L  L  L  *  I  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0031D11.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94697" stop="95095"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>396</number_coding_nucleotides>
                  <number_encoded_amino_acids>132</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YSFLCSQSNYERAGQGIGVGQELVNNPDLVATDPIISFKTAIWFWMTEQDNKPSCHNVIIGQWTPSPKDTAANRVPGYGVITNIINGQFECGMGPNTAAESRIGFYRRYCGMLNVPTGENLDCNNQKNFAQG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0031D11.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94197" stop="94505"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>306</number_coding_nucleotides>
                  <number_encoded_amino_acids>102</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMKFNIVSPVALSCLFFLFLTGTLAQNAGSIVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTAGDDTARKKEIAAFFGQTSHETNGNLDHPS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="97514" PGL_stop="99017"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97514" e_stop="97841"/>
            <exon e_start="98098" e_stop="98206"/>
            <exon e_start="98310" e_stop="99017"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.950" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="97514" e_stop="97841" e_length="328"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.998">
            <gDNA_intron_boundary i_start="97842" i_stop="98097" i_length="256"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="98098" e_stop="98206" e_length="109"/>
          </exon>
          <intron i_serial="2" don_prob="0.950" acc_prob="0.999">
            <gDNA_intron_boundary i_start="98207" i_stop="98309" i_length="103"/>
          </intron>
          <exon e_serial="3" e_score="0.999">
            <gDNA_exon_boundary e_start="98310" e_stop="99017" e_length="708"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97514" stop="97841"/>
              <exon start="98098" stop="98206"/>
              <exon start="98310" stop="98741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718380" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97535" stop="97841"/>
              <exon start="98098" stop="98206"/>
              <exon start="98310" stop="98849"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729903" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97535" stop="97841"/>
              <exon start="98098" stop="98206"/>
              <exon start="98310" stop="98717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706504" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97535" stop="97841"/>
              <exon start="98098" stop="98206"/>
              <exon start="98310" stop="98636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97536" stop="97841"/>
              <exon start="98098" stop="98206"/>
              <exon start="98310" stop="98813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97536" stop="97841"/>
              <exon start="98098" stop="98206"/>
              <exon start="98310" stop="98721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97537" stop="97841"/>
              <exon start="98098" stop="98206"/>
              <exon start="98310" stop="98725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97542" stop="97841"/>
              <exon start="98098" stop="98206"/>
              <exon start="98310" stop="98561"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97543" stop="97841"/>
              <exon start="98098" stop="98206"/>
              <exon start="98310" stop="98477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298953" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97546" stop="97841"/>
              <exon start="98098" stop="98138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537378" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97557" stop="97841"/>
              <exon start="98098" stop="98206"/>
              <exon start="98310" stop="98325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469170" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97558" stop="97841"/>
              <exon start="98098" stop="98206"/>
              <exon start="98310" stop="98821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97567" stop="97841"/>
              <exon start="98098" stop="98206"/>
              <exon start="98310" stop="98854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744952" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97727" stop="97841"/>
              <exon start="98098" stop="98206"/>
              <exon start="98310" stop="98855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689491" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97759" stop="97841"/>
              <exon start="98098" stop="98206"/>
              <exon start="98310" stop="98841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97759" stop="97841"/>
              <exon start="98098" stop="98206"/>
              <exon start="98310" stop="98774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349235" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97797" stop="97841"/>
              <exon start="98098" stop="98206"/>
              <exon start="98310" stop="98819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98162" stop="98206"/>
              <exon start="98310" stop="98782"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98198" stop="98206"/>
              <exon start="98310" stop="99017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98317" stop="98838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691062" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98318" stop="98838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691061" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98319" stop="98838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694902" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98341" stop="98820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214189" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98420" stop="98821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98420" stop="98818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98436" stop="98830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218190" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98488" stop="98830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217834" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAACACTATCTAATGCATAAGAAAGAACAGAGAGAAGCAAAAAAGAAATGGAGTTTTTGAGATCACAAATGGTATTATGTTGTGTCTTTTTGTTGTTCCTAACGGGAAGCTTTGCACAAGATGTTGGTACAATTGTGACAAGTGACTTGTTCAACGAGATGCTGAAGAATCGAAACGATGATAGATGTCCTGCCAAGGGCTTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCATTTCCAGGTTTTGGTACTACCGGTGATGATACTGCGCGTAAGAAGGAAATTGCTGCCTTTTTCGGTCAAACTTCTCATGAAACTACTG : GTGGTAGCCTAAGTGCTGATGGTCCATTTGCCGGAGGATATTGTTTTGTTAGGGAAGGCAATCAAATGGGAAGTGGATTTTATGGCAGAGGACCTATCCAATTGACAGG : GCAATCTAACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATGAATAAGGGATTTTGGATGCCCATTTGGAATATGTAGTTTCTTATTTTGTCTACACAAATAAGAGTTTCTTTTATCTTATAACATAATATACCACATGTACTATTATCTCATCGATATTTTAATTTCCCCTTTGTTTACGTAGTTCTTGCATTTACAATTTGCACTAGTATATGAGGGAAGCAATTTTAATAATTCAAGTGGCTACAGGGAGTGTATTTAGAGGGTTAAAAGTGTATTCTTTCTACTGACTTTTAGTAGTAGTTGCACAAAAGGCAGTGAACTTTTGAGTAAAAAATAAAT</gDNA_template>
            <first_frame> *  T  L  S  N  A  *  E  R  T  E  R  S  K  K  E  M  E  F  L  R  S  Q  M  V  L  C  C  V  F  L  L  F  L  T  G  S  F  A  Q  D  V  G  T  I  V  T  S  D  L  F  N  E  M  L  K  N  R  N  D  D  R  C  P  A  K  G  F  Y  T  Y  D  A  F  I  A  A  A  N  S  F  P  G  F  G  T  T  G  D  D  T  A  R  K  K  E  I  A  A  F  F  G  Q  T  S  H  E  T  T   : G  G  S  L  S  A  D  G  P  F  A  G  G  Y  C  F  V  R  E  G  N  Q  M  G  S  G  F  Y  G  R  G  P  I  Q  L  T  G :   Q  S  N  Y  D  L  A  G  Q  A  I  G  Q  D  L  V  N  N  P  D  L  V  A  T  D  A  T  V  S  F  K  T  A  I  W  F  W  M  T  A  Q  G  N  K  P  S  C  H  D  V  I  T  G  Q  W  T  P  S  A  A  D  A  S  A  N  R  Q  P  G  Y  G  V  I  T  N  I  I  N  G  G  I  E  C  G  K  G  Q  N  P  Q  V  E  D  R  I  G  F  Y  R  R  Y  C  T  I  L  N  V  A  P  G  D  N  L  D  C  Y  D  Q  R  N  F  A  E  A  *  L  C  V  L  V  M  M  M  S  E  *  I  R  D  F  G  C  P  F  G  I  C  S  F  L  F  C  L  H  K  *  E  F  L  L  S  Y  N  I  I  Y  H  M  Y  Y  Y  L  I  D  I  L  I  S  P  L  F  T  *  F  L  H  L  Q  F  A  L  V  Y  E  G  S  N  F  N  N  S  S  G  Y  R  E  C  I  *  R  V  K  S  V  F  F  L  L  T  F  S  S  S  C  T  K  G  S  E  L  L  S  K  K  *   </first_frame>
            <second_frame>  K  H  Y  L  M  H  K  K  E  Q  R  E  A  K  K  K  W  S  F  *  D  H  K  W  Y  Y  V  V  S  F  C  C  S  *  R  E  A  L  H  K  M  L  V  Q  L  *  Q  V  T  C  S  T  R  C  *  R  I  E  T  M  I  D  V  L  P  R  A  S  T  L  M  M  H  S  *  L  Q  P  I  H  F  Q  V  L  V  L  P  V  M  I  L  R  V  R  R  K  L  L  P  F  S  V  K  L  L  M  K  L  L  :  V  V  A  *  V  L  M  V  H  L  P  E  D  I  V  L  L  G  K  A  I  K  W  E  V  D  F  M  A  E  D  L  S  N  *  Q   : G  N  L  T  M  T  *  L  G  K  Q  L  D  K  T  *  L  T  T  L  T  *  *  L  Q  M  Q  L  Y  L  L  K  Q  Q  Y  G  S  G  *  P  H  K  A  I  S  H  H  A  T  M  L  S  Q  G  N  G  R  H  Q  P  P  M  H  Q  Q  I  D  N  Q  A  T  V  S  L  Q  T  *  L  T  V  E  L  N  V  A  K  D  R  I  H  K  W  R  I  G  L  D  S  T  E  G  I  V  R  Y  *  M  L  L  P  G  T  T  L  I  A  T  T  R  G  T  L  L  R  P  S  F  V  F  *  S  *  *  C  L  N  E  *  G  I  L  D  A  H  L  E  Y  V  V  S  Y  F  V  Y  T  N  K  S  F  F  Y  L  I  T  *  Y  T  T  C  T  I  I  S  S  I  F  *  F  P  L  C  L  R  S  S  C  I  Y  N  L  H  *  Y  M  R  E  A  I  L  I  I  Q  V  A  T  G  S  V  F  R  G  L  K  V  Y  S  F  Y  *  L  L  V  V  V  A  Q  K  A  V  N  F  *  V  K  N  K  </second_frame>
            <third_frame>   N  T  I  *  C  I  R  K  N  R  E  K  Q  K  R  N  G  V  F  E  I  T  N  G  I  M  L  C  L  F  V  V  P  N  G  K  L  C  T  R  C  W  Y  N  C  D  K  *  L  V  Q  R  D  A  E  E  S  K  R  *  *  M  S  C  Q  G  L  L  H  L  *  C  I  H  S  C  S  Q  F  I  S  R  F  W  Y  Y  R  *  *  Y  C  A  *  E  G  N  C  C  L  F  R  S  N  F  S  *  N  Y  W :   W  *  P  K  C  *  W  S  I  C  R  R  I  L  F  C  *  G  R  Q  S  N  G  K  W  I  L  W  Q  R  T  Y  P  I  D  R  :  A  I  *  L  *  L  S  W  A  S  N  W  T  R  L  S  *  Q  P  *  L  S  S  Y  R  C  N  C  I  F  *  N  S  N  M  V  L  D  D  R  T  R  Q  *  A  I  M  P  R  C  Y  H  R  A  M  D  A  I  S  R  R  C  I  S  K  *  T  T  R  L  R  C  H  Y  K  H  N  *  R  W  N  *  M  W  Q  R  T  E  S  T  S  G  G  S  D  W  I  L  Q  K  V  L  Y  D  T  E  C  C  S  R  G  Q  P  *  L  L  R  P  E  E  L  C  *  G  L  A  L  C  F  S  H  D  D  V  *  M  N  K  G  F  W  M  P  I  W  N  M  *  F  L  I  L  S  T  Q  I  R  V  S  F  I  L  *  H  N  I  P  H  V  L  L  S  H  R  Y  F  N  F  P  F  V  Y  V  V  L  A  F  T  I  C  T  S  I  *  G  K  Q  F  *  *  F  K  W  L  Q  G  V  Y  L  E  G  *  K  C  I  L  S  T  D  F  *  *  *  L  H  K  R  Q  *  T  F  E  *  K  I  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0031D11.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97535" stop="97841"/>
                    <exon start="98098" stop="98206"/>
                    <exon start="98310" stop="98685"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>789</number_coding_nucleotides>
                  <number_encoded_amino_acids>263</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ERTERSKKEMEFLRSQMVLCCVFLLFLTGSFAQDVGTIVTSDLFNEMLKNRNDDRCPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGGSLSADGPFAGGYCFVREGNQMGSGFYGRGPIQLTGQSNYDLAGQAIGQDLVNNPDLVATDATVSFKTAIWFWMTAQGNKPSCHDVITGQWTPSAADASANRQPGYGVITNIINGGIECGKGQNPQVEDRIGFYRRYCTILNVAPGDNLDCYDQRNFAEA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="98048" e_stop="98206"/>
            <exon e_start="98310" e_stop="99017"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.950" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="98048" e_stop="98206" e_length="159"/>
          </exon>
          <intron i_serial="1" don_prob="0.950" acc_prob="0.999">
            <gDNA_intron_boundary i_start="98207" i_stop="98309" i_length="103"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="98310" e_stop="99017" e_length="708"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98048" stop="98206"/>
              <exon start="98310" stop="98845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98162" stop="98206"/>
              <exon start="98310" stop="98782"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98198" stop="98206"/>
              <exon start="98310" stop="99017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98317" stop="98838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691062" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98318" stop="98838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691061" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98319" stop="98838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694902" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98341" stop="98820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214189" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98420" stop="98821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98420" stop="98818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98436" stop="98830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218190" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98488" stop="98830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217834" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTACGTTATATACACTACAATAAGTGAAGTATTTGGTTCTAATTTTGCAGGTGGTAGCCTAAGTGCTGATGGTCCATTTGCCGGAGGATATTGTTTTGTTAGGGAAGGCAATCAAATGGGAAGTGGATTTTATGGCAGAGGACCTATCCAATTGACAGG : GCAATCTAACTATGACTTAGCTGGGCAAGCAATTGGACAAGACTTAGTTAACAACCCTGACTTAGTAGCTACAGATGCAACTGTATCTTTTAAAACAGCAATATGGTTCTGGATGACCGCACAAGGCAATAAGCCATCATGCCACGATGTTATCACAGGGCAATGGACGCCATCAGCCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATGAATAAGGGATTTTGGATGCCCATTTGGAATATGTAGTTTCTTATTTTGTCTACACAAATAAGAGTTTCTTTTATCTTATAACATAATATACCACATGTACTATTATCTCATCGATATTTTAATTTCCCCTTTGTTTACGTAGTTCTTGCATTTACAATTTGCACTAGTATATGAGGGAAGCAATTTTAATAATTCAAGTGGCTACAGGGAGTGTATTTAGAGGGTTAAAAGTGTATTCTTTCTACTGACTTTTAGTAGTAGTTGCACAAAAGGCAGTGAACTTTTGAGTAAAAAATAAAT</gDNA_template>
            <first_frame> L  R  Y  I  H  Y  N  K  *  S  I  W  F  *  F  C  R  W  *  P  K  C  *  W  S  I  C  R  R  I  L  F  C  *  G  R  Q  S  N  G  K  W  I  L  W  Q  R  T  Y  P  I  D  R  :  A  I  *  L  *  L  S  W  A  S  N  W  T  R  L  S  *  Q  P  *  L  S  S  Y  R  C  N  C  I  F  *  N  S  N  M  V  L  D  D  R  T  R  Q  *  A  I  M  P  R  C  Y  H  R  A  M  D  A  I  S  R  R  C  I  S  K  *  T  T  R  L  R  C  H  Y  K  H  N  *  R  W  N  *  M  W  Q  R  T  E  S  T  S  G  G  S  D  W  I  L  Q  K  V  L  Y  D  T  E  C  C  S  R  G  Q  P  *  L  L  R  P  E  E  L  C  *  G  L  A  L  C  F  S  H  D  D  V  *  M  N  K  G  F  W  M  P  I  W  N  M  *  F  L  I  L  S  T  Q  I  R  V  S  F  I  L  *  H  N  I  P  H  V  L  L  S  H  R  Y  F  N  F  P  F  V  Y  V  V  L  A  F  T  I  C  T  S  I  *  G  K  Q  F  *  *  F  K  W  L  Q  G  V  Y  L  E  G  *  K  C  I  L  S  T  D  F  *  *  *  L  H  K  R  Q  *  T  F  E  *  K  I  N </first_frame>
            <second_frame>  Y  V  I  Y  T  T  I  S  E  V  F  G  S  N  F  A  G  G  S  L  S  A  D  G  P  F  A  G  G  Y  C  F  V  R  E  G  N  Q  M  G  S  G  F  Y  G  R  G  P  I  Q  L  T  G :   Q  S  N  Y  D  L  A  G  Q  A  I  G  Q  D  L  V  N  N  P  D  L  V  A  T  D  A  T  V  S  F  K  T  A  I  W  F  W  M  T  A  Q  G  N  K  P  S  C  H  D  V  I  T  G  Q  W  T  P  S  A  A  D  A  S  A  N  R  Q  P  G  Y  G  V  I  T  N  I  I  N  G  G  I  E  C  G  K  G  Q  N  P  Q  V  E  D  R  I  G  F  Y  R  R  Y  C  T  I  L  N  V  A  P  G  D  N  L  D  C  Y  D  Q  R  N  F  A  E  A  *  L  C  V  L  V  M  M  M  S  E  *  I  R  D  F  G  C  P  F  G  I  C  S  F  L  F  C  L  H  K  *  E  F  L  L  S  Y  N  I  I  Y  H  M  Y  Y  Y  L  I  D  I  L  I  S  P  L  F  T  *  F  L  H  L  Q  F  A  L  V  Y  E  G  S  N  F  N  N  S  S  G  Y  R  E  C  I  *  R  V  K  S  V  F  F  L  L  T  F  S  S  S  C  T  K  G  S  E  L  L  S  K  K  *   </second_frame>
            <third_frame>   T  L  Y  T  L  Q  *  V  K  Y  L  V  L  I  L  Q  V  V  A  *  V  L  M  V  H  L  P  E  D  I  V  L  L  G  K  A  I  K  W  E  V  D  F  M  A  E  D  L  S  N  *  Q   : G  N  L  T  M  T  *  L  G  K  Q  L  D  K  T  *  L  T  T  L  T  *  *  L  Q  M  Q  L  Y  L  L  K  Q  Q  Y  G  S  G  *  P  H  K  A  I  S  H  H  A  T  M  L  S  Q  G  N  G  R  H  Q  P  P  M  H  Q  Q  I  D  N  Q  A  T  V  S  L  Q  T  *  L  T  V  E  L  N  V  A  K  D  R  I  H  K  W  R  I  G  L  D  S  T  E  G  I  V  R  Y  *  M  L  L  P  G  T  T  L  I  A  T  T  R  G  T  L  L  R  P  S  F  V  F  *  S  *  *  C  L  N  E  *  G  I  L  D  A  H  L  E  Y  V  V  S  Y  F  V  Y  T  N  K  S  F  F  Y  L  I  T  *  Y  T  T  C  T  I  I  S  S  I  F  *  F  P  L  C  L  R  S  S  C  I  Y  N  L  H  *  Y  M  R  E  A  I  L  I  I  Q  V  A  T  G  S  V  F  R  G  L  K  V  Y  S  F  Y  *  L  L  V  V  V  A  Q  K  A  V  N  F  *  V  K  N  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0031D11.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98049" stop="98206"/>
                    <exon start="98310" stop="98685"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>531</number_coding_nucleotides>
                  <number_encoded_amino_acids>177</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YVIYTTISEVFGSNFAGGSLSADGPFAGGYCFVREGNQMGSGFYGRGPIQLTGQSNYDLAGQAIGQDLVNNPDLVATDATVSFKTAIWFWMTAQGNKPSCHDVITGQWTPSAADASANRQPGYGVITNIINGGIECGKGQNPQVEDRIGFYRRYCTILNVAPGDNLDCYDQRNFAEA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="97538" e_stop="97805"/>
            <exon e_start="98486" e_stop="98830"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.993"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="97538" e_stop="97805" e_length="268"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="97806" i_stop="98485" i_length="680"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="98486" e_stop="98830" e_length="345"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97538" stop="97805"/>
              <exon start="98486" stop="98821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98488" stop="98830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217834" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAACAGAGAGAAGCAAAAAAGAAATGGAGTTTTTGAGATCACAAATGGTATTATGTTGTGTCTTTTTGTTGTTCCTAACGGGAAGCTTTGCACAAGATGTTGGTACAATTGTGACAAGTGACTTGTTCAACGAGATGCTGAAGAATCGAAACGATGATAGATGTCCTGCCAAGGGCTTCTACACTTATGATGCATTCATAGCTGCAGCCAATTCATTTCCAGGTTTTGGTACTACCGGTGATGATACTGCGCGTAAGAAGGAAATTG : CCGCCGATGCATCAGCAAATAGACAACCAGGCTACGGTGTCATTACAAACATAATTAACGGTGGAATTGAATGTGGCAAAGGACAGAATCCACAAGTGGAGGATCGGATTGGATTCTACAGAAGGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGAGGCCTAGCTTTGTGTTTTAGTCATGATGATGTCTGAATGAATAAGGGATTTTGGATGCCCATTTGGAATATGTAGTTTCTTATTTTGTCTACACAAATAAGAGTTTCTTTTATCTTATAACATAATATACCACATGTACTATTATCTCATCG</gDNA_template>
            <first_frame> R  T  E  R  S  K  K  E  M  E  F  L  R  S  Q  M  V  L  C  C  V  F  L  L  F  L  T  G  S  F  A  Q  D  V  G  T  I  V  T  S  D  L  F  N  E  M  L  K  N  R  N  D  D  R  C  P  A  K  G  F  Y  T  Y  D  A  F  I  A  A  A  N  S  F  P  G  F  G  T  T  G  D  D  T  A  R  K  K  E  I   : A  A  D  A  S  A  N  R  Q  P  G  Y  G  V  I  T  N  I  I  N  G  G  I  E  C  G  K  G  Q  N  P  Q  V  E  D  R  I  G  F  Y  R  R  Y  C  T  I  L  N  V  A  P  G  D  N  L  D  C  Y  D  Q  R  N  F  A  E  A  *  L  C  V  L  V  M  M  M  S  E  *  I  R  D  F  G  C  P  F  G  I  C  S  F  L  F  C  L  H  K  *  E  F  L  L  S  Y  N  I  I  Y  H  M  Y  Y  Y  L  I  </first_frame>
            <second_frame>  E  Q  R  E  A  K  K  K  W  S  F  *  D  H  K  W  Y  Y  V  V  S  F  C  C  S  *  R  E  A  L  H  K  M  L  V  Q  L  *  Q  V  T  C  S  T  R  C  *  R  I  E  T  M  I  D  V  L  P  R  A  S  T  L  M  M  H  S  *  L  Q  P  I  H  F  Q  V  L  V  L  P  V  M  I  L  R  V  R  R  K  L  :  P  P  M  H  Q  Q  I  D  N  Q  A  T  V  S  L  Q  T  *  L  T  V  E  L  N  V  A  K  D  R  I  H  K  W  R  I  G  L  D  S  T  E  G  I  V  R  Y  *  M  L  L  P  G  T  T  L  I  A  T  T  R  G  T  L  L  R  P  S  F  V  F  *  S  *  *  C  L  N  E  *  G  I  L  D  A  H  L  E  Y  V  V  S  Y  F  V  Y  T  N  K  S  F  F  Y  L  I  T  *  Y  T  T  C  T  I  I  S  S </second_frame>
            <third_frame>   N  R  E  K  Q  K  R  N  G  V  F  E  I  T  N  G  I  M  L  C  L  F  V  V  P  N  G  K  L  C  T  R  C  W  Y  N  C  D  K  *  L  V  Q  R  D  A  E  E  S  K  R  *  *  M  S  C  Q  G  L  L  H  L  *  C  I  H  S  C  S  Q  F  I  S  R  F  W  Y  Y  R  *  *  Y  C  A  *  E  G  N  C :   R  R  C  I  S  K  *  T  T  R  L  R  C  H  Y  K  H  N  *  R  W  N  *  M  W  Q  R  T  E  S  T  S  G  G  S  D  W  I  L  Q  K  V  L  Y  D  T  E  C  C  S  R  G  Q  P  *  L  L  R  P  E  E  L  C  *  G  L  A  L  C  F  S  H  D  D  V  *  M  N  K  G  F  W  M  P  I  W  N  M  *  F  L  I  L  S  T  Q  I  R  V  S  F  I  L  *  H  N  I  P  H  V  L  L  S  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0031D11.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97538" stop="97805"/>
                    <exon start="98486" stop="98685"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>465</number_coding_nucleotides>
                  <number_encoded_amino_acids>155</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RTERSKKEMEFLRSQMVLCCVFLLFLTGSFAQDVGTIVTSDLFNEMLKNRNDDRCPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAADASANRQPGYGVITNIINGGIECGKGQNPQVEDRIGFYRRYCTILNVAPGDNLDCYDQRNFAEA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="104891" PGL_stop="107135"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104891" e_stop="105252"/>
            <exon e_start="105334" e_stop="105505"/>
            <exon e_start="105609" e_stop="105695"/>
            <exon e_start="107034" e_stop="107135"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.967" e_score="0.964"/>
          <exon-intron don_prob="0.696" acc_prob="0.762" e_score="0.983"/>
          <exon-intron don_prob="0.000" acc_prob="0.497" e_score="0.976"/>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.964">
            <gDNA_exon_boundary e_start="104891" e_stop="105252" e_length="362"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.967">
            <gDNA_intron_boundary i_start="105253" i_stop="105333" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="0.983">
            <gDNA_exon_boundary e_start="105334" e_stop="105505" e_length="172"/>
          </exon>
          <intron i_serial="2" don_prob="0.696" acc_prob="0.762">
            <gDNA_intron_boundary i_start="105506" i_stop="105608" i_length="103"/>
          </intron>
          <exon e_serial="3" e_score="0.976">
            <gDNA_exon_boundary e_start="105609" e_stop="105695" e_length="87"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.497">
            <gDNA_intron_boundary i_start="105696" i_stop="107033" i_length="1338"/>
          </intron>
          <exon e_serial="4" e_score="0.971">
            <gDNA_exon_boundary e_start="107034" e_stop="107135" e_length="102"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104891" stop="105252"/>
              <exon start="105334" stop="105505"/>
              <exon start="105609" stop="105691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408450" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104990" stop="105252"/>
              <exon start="105334" stop="105505"/>
              <exon start="105609" stop="105695"/>
              <exon start="107034" stop="107135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104990" stop="105252"/>
              <exon start="105334" stop="105505"/>
              <exon start="105609" stop="105675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445101" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAAAATGAATGGAAGACCAGTACTTTTCGGCTCTAGTTTAAAGAACAAGGGAATGTGTATTCAGCTAAGTTTTCAGTTGCTGGTAGTGACTATCACTGCAGTTTTAGTTCTTACGGTTTTGTCGATGTCCAGAGGTATTGGTCAAGCTCCAAAGTTAGTCGAGAAGCAGACCCAGATAAGCTCGTTATCTAGCTGTAATTTCTATTCTGGTAAATGGGTATTTGATAATCAATCTCGCCCTCTGTATAATGGGACAAATTGTTCGTTCATGGATGATGGAATGGCTTGTCAGAAGTTTGGGAGAAAGAATCTTGACTATCTCTACTGGAAATGGCAACCCAATGATTGTGACCTTCCTAG : ATTTAATGCTACGGCTATGCTGGAGAAGTTGAGGAACAAAAGGGTTGTTTATGTGGGAGATTCACTCAATAGGAATCAATGGGTTTCAATGGTCTGCATATTAGAATCAGAAATTCCTAATCATCTCAAATATGTTAACTATAATGGCTCTTTGGTCACCTTTAAAGCTATT : GAGTACAATGCTACTATTGATTTCTACTGGGCACCATTATTAGTTGAATCAAATTGCGACGATCCATCATATCATCGTGTGGAAGAA : CGCATAGTGAGAATCGATTCGATAGAAAAACATGCCAGAATTTGGAATGATGCTGATGTGCTAGTTTTTAATTCATATCTATGGTGGAGATTGAATTTGAAG</gDNA_template>
            <first_frame> K  K  M  N  G  R  P  V  L  F  G  S  S  L  K  N  K  G  M  C  I  Q  L  S  F  Q  L  L  V  V  T  I  T  A  V  L  V  L  T  V  L  S  M  S  R  G  I  G  Q  A  P  K  L  V  E  K  Q  T  Q  I  S  S  L  S  S  C  N  F  Y  S  G  K  W  V  F  D  N  Q  S  R  P  L  Y  N  G  T  N  C  S  F  M  D  D  G  M  A  C  Q  K  F  G  R  K  N  L  D  Y  L  Y  W  K  W  Q  P  N  D  C  D  L  P  R :   F  N  A  T  A  M  L  E  K  L  R  N  K  R  V  V  Y  V  G  D  S  L  N  R  N  Q  W  V  S  M  V  C  I  L  E  S  E  I  P  N  H  L  K  Y  V  N  Y  N  G  S  L  V  T  F  K  A  I  :  E  Y  N  A  T  I  D  F  Y  W  A  P  L  L  V  E  S  N  C  D  D  P  S  Y  H  R  V  E  E  :  R  I  V  R  I  D  S  I  E  K  H  A  R  I  W  N  D  A  D  V  L  V  F  N  S  Y  L  W  W  R  L  N  L  K </first_frame>
            <second_frame>  K  K  *  M  E  D  Q  Y  F  S  A  L  V  *  R  T  R  E  C  V  F  S  *  V  F  S  C  W  *  *  L  S  L  Q  F  *  F  L  R  F  C  R  C  P  E  V  L  V  K  L  Q  S  *  S  R  S  R  P  R  *  A  R  Y  L  A  V  I  S  I  L  V  N  G  Y  L  I  I  N  L  A  L  C  I  M  G  Q  I  V  R  S  W  M  M  E  W  L  V  R  S  L  G  E  R  I  L  T  I  S  T  G  N  G  N  P  M  I  V  T  F  L   : D  L  M  L  R  L  C  W  R  S  *  G  T  K  G  L  F  M  W  E  I  H  S  I  G  I  N  G  F  Q  W  S  A  Y  *  N  Q  K  F  L  I  I  S  N  M  L  T  I  M  A  L  W  S  P  L  K  L  L :   S  T  M  L  L  L  I  S  T  G  H  H  Y  *  L  N  Q  I  A  T  I  H  H  I  I  V  W  K  N :   A  *  *  E  S  I  R  *  K  N  M  P  E  F  G  M  M  L  M  C  *  F  L  I  H  I  Y  G  G  D  *  I  *   </second_frame>
            <third_frame>   K  N  E  W  K  T  S  T  F  R  L  *  F  K  E  Q  G  N  V  Y  S  A  K  F  S  V  A  G  S  D  Y  H  C  S  F  S  S  Y  G  F  V  D  V  Q  R  Y  W  S  S  S  K  V  S  R  E  A  D  P  D  K  L  V  I  *  L  *  F  L  F  W  *  M  G  I  *  *  S  I  S  P  S  V  *  W  D  K  L  F  V  H  G  *  W  N  G  L  S  E  V  W  E  K  E  S  *  L  S  L  L  E  M  A  T  Q  *  L  *  P  S  *  :  I  *  C  Y  G  Y  A  G  E  V  E  E  Q  K  G  C  L  C  G  R  F  T  Q  *  E  S  M  G  F  N  G  L  H  I  R  I  R  N  S  *  S  S  Q  I  C  *  L  *  W  L  F  G  H  L  *  S  Y   : *  V  Q  C  Y  Y  *  F  L  L  G  T  I  I  S  *  I  K  L  R  R  S  I  I  S  S  C  G  R   : T  H  S  E  N  R  F  D  R  K  T  C  Q  N  L  E  *  C  *  C  A  S  F  *  F  I  S  M  V  E  I  E  F  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0031D11.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104891" stop="105252"/>
                    <exon start="105334" stop="105505"/>
                    <exon start="105609" stop="105695"/>
                    <exon start="107034" stop="107135"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>723</number_coding_nucleotides>
                  <number_encoded_amino_acids>241</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKMNGRPVLFGSSLKNKGMCIQLSFQLLVVTITAVLVLTVLSMSRGIGQAPKLVEKQTQISSLSSCNFYSGKWVFDNQSRPLYNGTNCSFMDDGMACQKFGRKNLDYLYWKWQPNDCDLPRFNATAMLEKLRNKRVVYVGDSLNRNQWVSMVCILESEIPNHLKYVNYNGSLVTFKAIEYNATIDFYWAPLLVESNCDDPSYHRVEERIVRIDSIEKHARIWNDADVLVFNSYLWWRLNLK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="107344" PGL_stop="108447"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="107344" e_stop="107415"/>
            <exon e_start="107923" e_stop="108308"/>
            <exon e_start="108395" e_stop="108447"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.998" e_score="0.917"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.943"/>
          <exon-only e_score="0.943"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="107344" e_stop="107415" e_length="72"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.998">
            <gDNA_intron_boundary i_start="107416" i_stop="107922" i_length="507"/>
          </intron>
          <exon e_serial="2" e_score="0.943">
            <gDNA_exon_boundary e_start="107923" e_stop="108308" e_length="386"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="108309" i_stop="108394" i_length="86"/>
          </intron>
          <exon e_serial="3" e_score="0.943">
            <gDNA_exon_boundary e_start="108395" e_stop="108447" e_length="53"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107344" stop="107415"/>
              <exon start="107923" stop="108308"/>
              <exon start="108395" stop="108447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107344" stop="107415"/>
              <exon start="107923" stop="108308"/>
              <exon start="108395" stop="108447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E432831" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107344" stop="107415"/>
              <exon start="107923" stop="108308"/>
              <exon start="108395" stop="108444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E432832" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGGTTGGATACTCATGTTAATCGCTCCAAGACTCGAGTTTTCTTTGTTAGTTTATCACCTACACACAACAG : GGGAGAAGATTGGGGGAAAGCAAATGGTCAGAACTGCTACGATGAAACAGAACCGATAACTAATAGAGAGTATTGGGGATCAGATTCAGATCCAAAGATGATGAAATTGGTGGAATCGGTCATCAAGAAACTGAATGAGAAGAGTGGTTTCAAAGTTGAGTTGCTCAACATTACTCAACTTTCTGAATATAGAAAGGAAGGTCATTCATCAATATACAGAAAGCACTGGGATCCTCTAACCAAAGAACAATTGGCAAATCCAAGTAGTTATGCAGATTGTATACATTGGTGCCTTCCTGGAGTTCCTGATGTTTGGAATCATTTTTTATATACACACCTAGTTTACTTGTGATCCATACACAACGCTACTAATTGGTACAAAAAAA : GTTTATATATACATGTTTATATCAAATCAAATAATGCAAGAAGTGTTTTTGTA</gDNA_template>
            <first_frame> L  V  G  Y  S  C  *  S  L  Q  D  S  S  F  L  C  *  F  I  T  Y  T  Q  Q  :  G  R  R  L  G  E  S  K  W  S  E  L  L  R  *  N  R  T  D  N  *  *  R  V  L  G  I  R  F  R  S  K  D  D  E  I  G  G  I  G  H  Q  E  T  E  *  E  E  W  F  Q  S  *  V  A  Q  H  Y  S  T  F  *  I  *  K  G  R  S  F  I  N  I  Q  K  A  L  G  S  S  N  Q  R  T  I  G  K  S  K  *  L  C  R  L  Y  T  L  V  P  S  W  S  S  *  C  L  E  S  F  F  I  Y  T  P  S  L  L  V  I  H  T  Q  R  Y  *  L  V  Q  K  K :   F  I  Y  T  C  L  Y  Q  I  K  *  C  K  K  C  F  C  </first_frame>
            <second_frame>  W  L  D  T  H  V  N  R  S  K  T  R  V  F  F  V  S  L  S  P  T  H  N  R :   G  E  D  W  G  K  A  N  G  Q  N  C  Y  D  E  T  E  P  I  T  N  R  E  Y  W  G  S  D  S  D  P  K  M  M  K  L  V  E  S  V  I  K  K  L  N  E  K  S  G  F  K  V  E  L  L  N  I  T  Q  L  S  E  Y  R  K  E  G  H  S  S  I  Y  R  K  H  W  D  P  L  T  K  E  Q  L  A  N  P  S  S  Y  A  D  C  I  H  W  C  L  P  G  V  P  D  V  W  N  H  F  L  Y  T  H  L  V  Y  L  *  S  I  H  N  A  T  N  W  Y  K  K   : S  L  Y  I  H  V  Y  I  K  S  N  N  A  R  S  V  F  V </second_frame>
            <third_frame>   G  W  I  L  M  L  I  A  P  R  L  E  F  S  L  L  V  Y  H  L  H  T  T   : G  E  K  I  G  G  K  Q  M  V  R  T  A  T  M  K  Q  N  R  *  L  I  E  S  I  G  D  Q  I  Q  I  Q  R  *  *  N  W  W  N  R  S  S  R  N  *  M  R  R  V  V  S  K  L  S  C  S  T  L  L  N  F  L  N  I  E  R  K  V  I  H  Q  Y  T  E  S  T  G  I  L  *  P  K  N  N  W  Q  I  Q  V  V  M  Q  I  V  Y  I  G  A  F  L  E  F  L  M  F  G  I  I  F  Y  I  H  T  *  F  T  C  D  P  Y  T  T  L  L  I  G  T  K  K  :  V  Y  I  Y  M  F  I  S  N  Q  I  M  Q  E  V  F  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0031D11.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107345" stop="107415"/>
                    <exon start="107923" stop="108274"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>420</number_coding_nucleotides>
                  <number_encoded_amino_acids>140</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WLDTHVNRSKTRVFFVSLSPTHNRGEDWGKANGQNCYDETEPITNREYWGSDSDPKMMKLVESVIKKLNEKSGFKVELLNITQLSEYRKEGHSSIYRKHWDPLTKEQLANPSSYADCIHWCLPGVPDVWNHFLYTHLVYL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="108980" PGL_stop="110364"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108980" e_stop="109251"/>
            <exon e_start="109926" e_stop="110079"/>
            <exon e_start="110156" e_stop="110364"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.998" e_score="0.993"/>
          <exon-intron don_prob="0.989" acc_prob="0.920" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="108980" e_stop="109251" e_length="272"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.998">
            <gDNA_intron_boundary i_start="109252" i_stop="109925" i_length="674"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="109926" e_stop="110079" e_length="154"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.920">
            <gDNA_intron_boundary i_start="110080" i_stop="110155" i_length="76"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="110156" e_stop="110364" e_length="209"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108980" stop="109251"/>
              <exon start="109926" stop="110079"/>
              <exon start="110156" stop="110364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300318" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAAATTATGTTTTGGGGTTTTGTTTTGTTTTGTGTGTTGTCTACAAGAGGAGGATTGACACAAGATGTTGGTGCTCTTATTAGTAAAGACATATTTGAGAGAATGCTATTGCATCGTAATGATGCCAATTGTAATGCCAAAGGATTTTACACTTATGATGCTTTTATAACAGCTGCAAGGTCCTTTGCTGCTTTTGGAACTACTGGAAACACCAACACTCGTAAGAAGGAAATCGCTGCATTTTTGGCACAAACTTCTCTTGAAACAACCG : GGGGGTGGGGAACAGCTCCGGATGGTCCATTTTCATGGGGATATTGCTTCAAGCAAGAACAAGGTAGCCCACCAGATTACTGTGTTGCAAATCAACAGTGGCCTTGTGCTCCTGGTAAAAAATACTTTGGTCGAGGTCCCATCCAAATATCCTA : CAACTACAACTATGGACCAGCAGGAAGAGCCATAGGAGTTGATTTGTTAAACAATCCAGATGCTGTTGCAAATGATGCAGTCGTTTCATTCAAGACAGCCTTGTGGTTCTGGATGACGGCCCAGAGACCAAAGCCATCGGCCCATTTTGTTATTACTGGTAAATGGAGACCAACAGGAGCTGATTTGTCTGCTGGTCGTGTCTCTGGCT</gDNA_template>
            <first_frame> Q  N  Y  V  L  G  F  C  F  V  L  C  V  V  Y  K  R  R  I  D  T  R  C  W  C  S  Y  *  *  R  H  I  *  E  N  A  I  A  S  *  *  C  Q  L  *  C  Q  R  I  L  H  L  *  C  F  Y  N  S  C  K  V  L  C  C  F  W  N  Y  W  K  H  Q  H  S  *  E  G  N  R  C  I  F  G  T  N  F  S  *  N  N  R :   G  V  G  N  S  S  G  W  S  I  F  M  G  I  L  L  Q  A  R  T  R  *  P  T  R  L  L  C  C  K  S  T  V  A  L  C  S  W  *  K  I  L  W  S  R  S  H  P  N  I  L  :  Q  L  Q  L  W  T  S  R  K  S  H  R  S  *  F  V  K  Q  S  R  C  C  C  K  *  C  S  R  F  I  Q  D  S  L  V  V  L  D  D  G  P  E  T  K  A  I  G  P  F  C  Y  Y  W  *  M  E  T  N  R  S  *  F  V  C  W  S  C  L  W   </first_frame>
            <second_frame>  K  I  M  F  W  G  F  V  L  F  C  V  L  S  T  R  G  G  L  T  Q  D  V  G  A  L  I  S  K  D  I  F  E  R  M  L  L  H  R  N  D  A  N  C  N  A  K  G  F  Y  T  Y  D  A  F  I  T  A  A  R  S  F  A  A  F  G  T  T  G  N  T  N  T  R  K  K  E  I  A  A  F  L  A  Q  T  S  L  E  T  T   : G  G  W  G  T  A  P  D  G  P  F  S  W  G  Y  C  F  K  Q  E  Q  G  S  P  P  D  Y  C  V  A  N  Q  Q  W  P  C  A  P  G  K  K  Y  F  G  R  G  P  I  Q  I  S  Y :   N  Y  N  Y  G  P  A  G  R  A  I  G  V  D  L  L  N  N  P  D  A  V  A  N  D  A  V  V  S  F  K  T  A  L  W  F  W  M  T  A  Q  R  P  K  P  S  A  H  F  V  I  T  G  K  W  R  P  T  G  A  D  L  S  A  G  R  V  S  G  </second_frame>
            <third_frame>   K  L  C  F  G  V  L  F  C  F  V  C  C  L  Q  E  E  D  *  H  K  M  L  V  L  L  L  V  K  T  Y  L  R  E  C  Y  C  I  V  M  M  P  I  V  M  P  K  D  F  T  L  M  M  L  L  *  Q  L  Q  G  P  L  L  L  L  E  L  L  E  T  P  T  L  V  R  R  K  S  L  H  F  W  H  K  L  L  L  K  Q  P  :  G  G  G  E  Q  L  R  M  V  H  F  H  G  D  I  A  S  S  K  N  K  V  A  H  Q  I  T  V  L  Q  I  N  S  G  L  V  L  L  V  K  N  T  L  V  E  V  P  S  K  Y  P   : T  T  T  T  M  D  Q  Q  E  E  P  *  E  L  I  C  *  T  I  Q  M  L  L  Q  M  M  Q  S  F  H  S  R  Q  P  C  G  S  G  *  R  P  R  D  Q  S  H  R  P  I  L  L  L  L  V  N  G  D  Q  Q  E  L  I  C  L  L  V  V  S  L  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0031D11.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108981" stop="109251"/>
                    <exon start="109926" stop="110079"/>
                    <exon start="110156" stop="110363"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>633</number_coding_nucleotides>
                  <number_encoded_amino_acids>211</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KIMFWGFVLFCVLSTRGGLTQDVGALISKDIFERMLLHRNDANCNAKGFYTYDAFITAARSFAAFGTTGNTNTRKKEIAAFLAQTSLETTGGWGTAPDGPFSWGYCFKQEQGSPPDYCVANQQWPCAPGKKYFGRGPIQISYNYNYGPAGRAIGVDLLNNPDAVANDAVVSFKTALWFWMTAQRPKPSAHFVITGKWRPTGADLSAGRVSG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="110370" PGL_stop="110635"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="110370" e_stop="110635"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="110370" e_stop="110635" e_length="266"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110370" stop="110635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549153" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110371" stop="110635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309771" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAATCACCAACATAATTAATGGAGGAATAGAATGTGGAAAAGGTTCTAATCCAAAAATGGAGAATAGAATTGGGTTTTACAAGAGATACTTGGAGTCAATCCTGGGGTCAATTTGGACTGTGCTAAACAAACGCCTTTTGGCCAGTAAAATAAACTACTACATAGTCAAATAATGTACTTCTTCCAGCCATAGTGATTGGTGAGAAATATGTTATCCAAAATATTTAAGTTATATAATAAAACAAAGTTATATTATCAGAGGAAT</gDNA_template>
            <first_frame> L  I  T  N  I  I  N  G  G  I  E  C  G  K  G  S  N  P  K  M  E  N  R  I  G  F  Y  K  R  Y  L  E  S  I  L  G  S  I  W  T  V  L  N  K  R  L  L  A  S  K  I  N  Y  Y  I  V  K  *  C  T  S  S  S  H  S  D  W  *  E  I  C  Y  P  K  Y  L  S  Y  I  I  K  Q  S  Y  I  I  R  G   </first_frame>
            <second_frame>  *  S  P  T  *  L  M  E  E  *  N  V  E  K  V  L  I  Q  K  W  R  I  E  L  G  F  T  R  D  T  W  S  Q  S  W  G  Q  F  G  L  C  *  T  N  A  F  W  P  V  K  *  T  T  T  *  S  N  N  V  L  L  P  A  I  V  I  G  E  K  Y  V  I  Q  N  I  *  V  I  *  *  N  K  V  I  L  S  E  E  </second_frame>
            <third_frame>   N  H  Q  H  N  *  W  R  N  R  M  W  K  R  F  *  S  K  N  G  E  *  N  W  V  L  Q  E  I  L  G  V  N  P  G  V  N  L  D  C  A  K  Q  T  P  F  G  Q  *  N  K  L  L  H  S  Q  I  M  Y  F  F  Q  P  *  *  L  V  R  N  M  L  S  K  I  F  K  L  Y  N  K  T  K  L  Y  Y  Q  R  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLe0031D11.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="113253" PGL_stop="114074"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="113253" e_stop="114074"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="113253" e_stop="114074" e_length="822"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113253" stop="113988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345502" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113261" stop="114074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722459" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113285" stop="113825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113367" stop="113732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301487" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACCCTAATTTTGTCCTCACAGAAGGAAGAAGTGGTTACAACAAGACGAAGAAACAGCTGAGAAAATGGGGAAATTACCACCTTCCTTAAGGTCAGCTAACTTTGCTGTAAACACTCTCATCAAAACTCCATCTCCATCCCCATCCCCATCCCCACCTCCAACCTCAAAACCCCATTATTATCCCAAAAAATCACAATCACCCAAGAAAAAACCCACATCAATTACTGAACCCCAGCTTCCATCATCTATTCTAGCCTTTGATTCAACATCTCTTTCAGATGCTAAAACCCTTTTCAATTCTCTGATTTCCAGTACCAGAAACCCCTCTACAGACAACAAATTTTATAATGCAGTTCTTCAATCATTTTCCTCCAATTCAACTCTCCAAGATTCAATCTTTTTCCTTAATCACATGATCAAGGTTCACCCTCCTTTCTCCCCTGACAGGTTTACATACCATGTTCTCCTCGTCCAATCTTGTAAGTCTGTTGACCTTTCTTTATCCCCTGTTCATCAGGTTCTTAATCTTATGACTACCAATGGTTTCCCTCCTAATAAGGTCTCCACAGACATTGCTGTGAGGACCCTTTGCTCTTCCGGCCACGAAGAGCAAGCCATTGAGCTAGTGAAAGAACTTTCCTCCAAAGACTCTCCCCCTGATACATATACTTATAATTTTATTATTAGGCATTTGTGCAAGAACAGGCCTTTGAGTACCATGAATAACTTTATTAAAGAAATGAGGGAAGGTTTTGATATAAAACCTGATCTTGTTACATATACAATTATGATTGACAATGTTTGTAATAGTAAAAATCTTA</gDNA_template>
            <first_frame> N  P  N  F  V  L  T  E  G  R  S  G  Y  N  K  T  K  K  Q  L  R  K  W  G  N  Y  H  L  P  *  G  Q  L  T  L  L  *  T  L  S  S  K  L  H  L  H  P  H  P  H  P  H  L  Q  P  Q  N  P  I  I  I  P  K  N  H  N  H  P  R  K  N  P  H  Q  L  L  N  P  S  F  H  H  L  F  *  P  L  I  Q  H  L  F  Q  M  L  K  P  F  S  I  L  *  F  P  V  P  E  T  P  L  Q  T  T  N  F  I  M  Q  F  F  N  H  F  P  P  I  Q  L  S  K  I  Q  S  F  S  L  I  T  *  S  R  F  T  L  L  S  P  L  T  G  L  H  T  M  F  S  S  S  N  L  V  S  L  L  T  F  L  Y  P  L  F  I  R  F  L  I  L  *  L  P  M  V  S  L  L  I  R  S  P  Q  T  L  L  *  G  P  F  A  L  P  A  T  K  S  K  P  L  S  *  *  K  N  F  P  P  K  T  L  P  L  I  H  I  L  I  I  L  L  L  G  I  C  A  R  T  G  L  *  V  P  *  I  T  L  L  K  K  *  G  K  V  L  I  *  N  L  I  L  L  H  I  Q  L  *  L  T  M  F  V  I  V  K  I  L </first_frame>
            <second_frame>  T  L  I  L  S  S  Q  K  E  E  V  V  T  T  R  R  R  N  S  *  E  N  G  E  I  T  T  F  L  K  V  S  *  L  C  C  K  H  S  H  Q  N  S  I  S  I  P  I  P  I  P  T  S  N  L  K  T  P  L  L  S  Q  K  I  T  I  T  Q  E  K  T  H  I  N  Y  *  T  P  A  S  I  I  Y  S  S  L  *  F  N  I  S  F  R  C  *  N  P  F  Q  F  S  D  F  Q  Y  Q  K  P  L  Y  R  Q  Q  I  L  *  C  S  S  S  I  I  F  L  Q  F  N  S  P  R  F  N  L  F  P  *  S  H  D  Q  G  S  P  S  F  L  P  *  Q  V  Y  I  P  C  S  P  R  P  I  L  *  V  C  *  P  F  F  I  P  C  S  S  G  S  *  S  Y  D  Y  Q  W  F  P  S  *  *  G  L  H  R  H  C  C  E  D  P  L  L  F  R  P  R  R  A  S  H  *  A  S  E  R  T  F  L  Q  R  L  S  P  *  Y  I  Y  L  *  F  Y  Y  *  A  F  V  Q  E  Q  A  F  E  Y  H  E  *  L  Y  *  R  N  E  G  R  F  *  Y  K  T  *  S  C  Y  I  Y  N  Y  D  *  Q  C  L  *  *  *  K  S   </second_frame>
            <third_frame>   P  *  F  C  P  H  R  R  K  K  W  L  Q  Q  D  E  E  T  A  E  K  M  G  K  L  P  P  S  L  R  S  A  N  F  A  V  N  T  L  I  K  T  P  S  P  S  P  S  P  S  P  P  P  T  S  K  P  H  Y  Y  P  K  K  S  Q  S  P  K  K  K  P  T  S  I  T  E  P  Q  L  P  S  S  I  L  A  F  D  S  T  S  L  S  D  A  K  T  L  F  N  S  L  I  S  S  T  R  N  P  S  T  D  N  K  F  Y  N  A  V  L  Q  S  F  S  S  N  S  T  L  Q  D  S  I  F  F  L  N  H  M  I  K  V  H  P  P  F  S  P  D  R  F  T  Y  H  V  L  L  V  Q  S  C  K  S  V  D  L  S  L  S  P  V  H  Q  V  L  N  L  M  T  T  N  G  F  P  P  N  K  V  S  T  D  I  A  V  R  T  L  C  S  S  G  H  E  E  Q  A  I  E  L  V  K  E  L  S  S  K  D  S  P  P  D  T  Y  T  Y  N  F  I  I  R  H  L  C  K  N  R  P  L  S  T  M  N  N  F  I  K  E  M  R  E  G  F  D  I  K  P  D  L  V  T  Y  T  I  M  I  D  N  V  C  N  S  K  N  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0031D11.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113261" stop="114073"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>813</number_coding_nucleotides>
                  <number_encoded_amino_acids>271</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FCPHRRKKWLQQDEETAEKMGKLPPSLRSANFAVNTLIKTPSPSPSPSPPPTSKPHYYPKKSQSPKKKPTSITEPQLPSSILAFDSTSLSDAKTLFNSLISSTRNPSTDNKFYNAVLQSFSSNSTLQDSIFFLNHMIKVHPPFSPDRFTYHVLLVQSCKSVDLSLSPVHQVLNLMTTNGFPPNKVSTDIAVRTLCSSGHEEQAIELVKELSSKDSPPDTYTYNFIIRHLCKNRPLSTMNNFIKEMREGFDIKPDLVTYTIMIDNVCNSKNL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="114513" PGL_stop="115022"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="114513" e_stop="115022"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.941"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.941">
            <gDNA_exon_boundary e_start="114513" e_stop="115022" e_length="510"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114513" stop="115022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425929" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGATGTTATGAAACAGAATGGTACGAAGCTTGAGACAGGATCTTATGGAACTTTTCTCAGAGCTCTCTGTCGGAATGGCAGAGTAGCAGATGCTTATGAAGTTTTTGATTATGCAATAGAGAGCAAGAGTTTGACTGATGTTGCTGCGTATACAACATTGGAGAGTACTTTGAAGTGGCTTAAGAAGGCTAGAGAGCAGGGACTTGTCATTTGATCTCCATTGCTGGTACTCTGATTTATCTGAAGTGTTGTACTTATTCATGGGCATTGTTAATCTTGCTTCGAGATTTGTCACTTCTCCAAGTGCTCCTCTATGAGCTTGAGAAGTCAAATCTTCTCATCATTTGATTCTTTTTATGTACTTTTTCATGTTATGAAATACACAGGAGTGTTTGAATTTATTATACATATGGCAGGAACTCTGTGTCTGAATTAATTGTAAATATAACAGGATTCTCAAGATAGAAGAGTATGGAACATTAACTATTTTCCACTCATTTAGAAAATGA</gDNA_template>
            <first_frame> M  M  L  *  N  R  M  V  R  S  L  R  Q  D  L  M  E  L  F  S  E  L  S  V  G  M  A  E  *  Q  M  L  M  K  F  L  I  M  Q  *  R  A  R  V  *  L  M  L  L  R  I  Q  H  W  R  V  L  *  S  G  L  R  R  L  E  S  R  D  L  S  F  D  L  H  C  W  Y  S  D  L  S  E  V  L  Y  L  F  M  G  I  V  N  L  A  S  R  F  V  T  S  P  S  A  P  L  *  A  *  E  V  K  S  S  H  H  L  I  L  F  M  Y  F  F  M  L  *  N  T  Q  E  C  L  N  L  L  Y  I  W  Q  E  L  C  V  *  I  N  C  K  Y  N  R  I  L  K  I  E  E  Y  G  T  L  T  I  F  H  S  F  R  K  * </first_frame>
            <second_frame>  *  C  Y  E  T  E  W  Y  E  A  *  D  R  I  L  W  N  F  S  Q  S  S  L  S  E  W  Q  S  S  R  C  L  *  S  F  *  L  C  N  R  E  Q  E  F  D  *  C  C  C  V  Y  N  I  G  E  Y  F  E  V  A  *  E  G  *  R  A  G  T  C  H  L  I  S  I  A  G  T  L  I  Y  L  K  C  C  T  Y  S  W  A  L  L  I  L  L  R  D  L  S  L  L  Q  V  L  L  Y  E  L  E  K  S  N  L  L  I  I  *  F  F  L  C  T  F  S  C  Y  E  I  H  R  S  V  *  I  Y  Y  T  Y  G  R  N  S  V  S  E  L  I  V  N  I  T  G  F  S  R  *  K  S  M  E  H  *  L  F  S  T  H  L  E  N   </second_frame>
            <third_frame>   D  V  M  K  Q  N  G  T  K  L  E  T  G  S  Y  G  T  F  L  R  A  L  C  R  N  G  R  V  A  D  A  Y  E  V  F  D  Y  A  I  E  S  K  S  L  T  D  V  A  A  Y  T  T  L  E  S  T  L  K  W  L  K  K  A  R  E  Q  G  L  V  I  *  S  P  L  L  V  L  *  F  I  *  S  V  V  L  I  H  G  H  C  *  S  C  F  E  I  C  H  F  S  K  C  S  S  M  S  L  R  S  Q  I  F  S  S  F  D  S  F  Y  V  L  F  H  V  M  K  Y  T  G  V  F  E  F  I  I  H  M  A  G  T  L  C  L  N  *  L  *  I  *  Q  D  S  Q  D  R  R  V  W  N  I  N  Y  F  P  L  I  *  K  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0031D11.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="114515" stop="114727"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DVMKQNGTKLETGSYGTFLRALCRNGRVADAYEVFDYAIESKSLTDVAAYTTLESTLKWLKKAREQGLVI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 319 chains have been computed
$ 
$ memory statistics:
$ 1295104 bytes spliced alignments in total
$ 196 spliced alignments have been stored
$ 6607 bytes was the average size of a spliced alignment
$ 35616 bytes predicted gene locations in total
$ 21 predicted gene locations have been stored
$ 1696 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 381 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 10:57:40
-->
