<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 10:51:31"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E717315" ref_strand="+" ref_description="SGN-E717315 [FB19DD06]">
      <seq>aagtggatatttgtactgtcccttgcactgcttcaagctgcttactacaggcgtttgaggtggtctgttctcaagtcacgtaagctggtccttgatgttgtcaattagaacatcccctattcaaatgcttgtggagcaggcaaataatattatctttctcaaaatgtttttgttgtttggcgtcttactcttgaatggcctggtttttggtaaagcaaacaggctaaaattttcttatatttggagttcaaataagaagaggcccgtgtaattttcaagttgtgatttttatagtggggagacattctcgccttgtttttgaagctgtaatccctgtttgtgagctgtctgtctgactgttgtgaaactttgctctccagatttatagttttgtgacttgacatacaattttattgcacgtaaaaagaacctattccaagggttaccaaaacgattaatcaaataagaatatttagtagtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="22981" stop="21900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22681" g_stop="22200" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="482" r_length="482" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="483" polyA_stop="497"/>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E717315" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22681" e_stop="22200"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTGGATATTTGTACTGTCCCTTGCACTGCTTCAAGCTGCTTACTACAGGCGTTTGAGGTGGTCTGTTCTCAAGTCACGTAAGCTGGTCCTTGATGTTGTCAATTAGAACATCCCCTATTCAAATGCTTGTGGAGCAGGCAAATAATATTATCTTTCTCAAAATGTTTTTGTTGTTTGGCGTCTTACTCTTGAATGGCCTGGTTTTTGGTAAAGCAAACAGGCTAAAATTTTCTTATATTTGGAGTTCAAATAAGAAGAGGCCCGTGTAATTTTCAAGTTGTGATTTTTATAGTGGGGAGACATTCTCGCCTTGTTTTTGAAGCTGTAATCCCTGTTTGTGAGCTGTCTGTCTGACTGTTGTGAAACTTTGCTCTCCAGATTTATAGTTTTGTGACTTGACATACAATTTTATTGCACGTAAAAAGAACCTATTCCAAGGGTTACCAAAACGATTAATCAAATAAGAATATTTAGTAGTAA</genome_strand>
        <mrna_strand>AAGTGGATATTTGTACTGTCCCTTGCACTGCTTCAAGCTGCTTACTACAGGCGTTTGAGGTGGTCTGTTCTCAAGTCACGTAAGCTGGTCCTTGATGTTGTCAATTAGAACATCCCCTATTCAAATGCTTGTGGAGCAGGCAAATAATATTATCTTTCTCAAAATGTTTTTGTTGTTTGGCGTCTTACTCTTGAATGGCCTGGTTTTTGGTAAAGCAAACAGGCTAAAATTTTCTTATATTTGGAGTTCAAATAAGAAGAGGCCCGTGTAATTTTCAAGTTGTGATTTTTATAGTGGGGAGACATTCTCGCCTTGTTTTTGAAGCTGTAATCCCTGTTTGTGAGCTGTCTGTCTGACTGTTGTGAAACTTTGCTCTCCAGATTTATAGTTTTGTGACTTGACATACAATTTTATTGCACGTAAAAAGAACCTATTCCAAGGGTTACCAAAACGATTAATCAAATAAGAATATTTAGTAGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E745946" ref_strand="+" ref_description="SGN-E745946 [GI|47105456]">
      <seq>gagctcgtcctggagcaaaacctcctcctcttagaattttctgaatagttttgaagactagactggttttccggatctctcaggcgctgtttgtcctatcgccgtcgatcaaccctctctacggtccttttccgagggcgtgactaacaatgttgggaggtagagcagtccatcgcttactaggcaggaaatttcaatctgaatccacggcatctccaattttatcatcctttgtttccaaaaaagctcaagaagaatttggttcttttggcatgaagtccttcagaacattagcactcattggagcgggtgtatctggacttctaggttttgcgacagtagcatctgctgatgaggctgaacacggattggaatgcccaagctatccttggcctcatgcaggcattcttagttcatacgatcatgcttcgattcgtcgtggtcaccaggtttatcaacaagtatgtgcatcttgtcattcaatgtcacttgtttcatatcgtgacttggtcggggtggcatatacagaggaagaagtaaaggctatggcagctgagattgaggtggcggatgggcctaatgatgagggtgaaatgtttacccgtcctggtaaactgagtgatcgttttcctcagccatatccaaatgaagcagctgctagatttgctaatgggggagcctaccctccagatttaagtcttattacaaaagcacgccataatggtcaaaactatgtgtttgctcttcttactggctatcgtgatcctcctgctggtgtttcgattcgtgaaggactgcactacaatccttacttccctggtggagctattgcaatgccaaaaatgcttaatgatggtgctgttgagtatgaagatggtgtccctgcaacagaagctcagatggggaaagatgtggtgtcatttttaacttgggctgctgaaccagaaatggaagagagaaaactgatgggcttcaagtggatatttgtactgtcccttgcactgcttcaagctgcttactacaggcgtttgaggtggtctgttctcaagtcacgtaagctggtccttgatgttgtcaattagaacatcccctattcaaatgcttgtggagcaggcaaataatattatctttctcaaaatgtttttgttgtttggcgtcttactcttgaatggcctggtttttggtaaagcaaacaggctaaaattttcttatatttggagttcaaataagaagaggcccgtgtaattttcaagttgtgatttttatagtggggagacattctcgccttgtttttgaagctgtaatccctgtttgtgagctgtctgtctgactgttgtgaaactttgctctccagatttatagttttgtgacttgacatacaattttattgcacgtaaaaagaacctattccaagggttccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="27363" stop="21919"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27064" g_stop="26931" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26930" i_stop="26659" i_length="272">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26658" g_stop="26584" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="209" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26583" i_stop="25915" i_length="669">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25914" g_stop="25694" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="430" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25693" i_stop="24662" i_length="1032">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24661" g_stop="24382" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="710" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24381" i_stop="24274" i_length="108">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24273" g_stop="24202" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="711" r_stop="782" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="24201" i_stop="23074" i_length="1128">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.571" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="23073" g_stop="22957" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="783" r_stop="899" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="22956" i_stop="22844" i_length="113">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="22843" g_stop="22778" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="900" r_stop="965" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="22777" i_stop="22691" i_length="87">
            <donor d_prob="0.380" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="22690" g_stop="22219" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="966" r_stop="1437" r_length="472" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E745946" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>1437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745946" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27064" e_stop="26931"/>
          <exon e_start="26658" e_stop="26584"/>
          <exon e_start="25914" e_stop="25694"/>
          <exon e_start="24661" e_stop="24382"/>
          <exon e_start="24273" e_stop="24202"/>
          <exon e_start="23073" e_stop="22957"/>
          <exon e_start="22843" e_stop="22778"/>
          <exon e_start="22690" e_stop="22219"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCTCGTCCTGGAGCAAAACCTCCTCCTCTTAGAATTTTCTGAATAGTTTTGAAGACTAGACTGGTTTTCCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCGGTGAGATATTATCCCTTCGTCTCTCCTCAATTTCTTCGAAGCTCTAGCTTGTTTCATCTTGAAAAGCACCCTAGGATTCCCTTACTTGTTGACGGTGTTTTGAGTAGAACGAATTTGCAGATCGCACAAAGTTGTTTGCTAGGGGAATAAGGAACTGTAGAATGAGTTAGGTTAAATAAATAGTCCGTTCTTAGGCGTATTGACTTAGGAGTAAAATAATCAAATCTGTTGTGTTTTGTTTCCTATTTTTTAATTTTCTGATTTCCTGACAGAGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACGGTATGGCTGTACATTCTTTCTTCGTAGCCGATGCTTATACTCTGAATCTTTGGTTTATGTATATAAGGAGACTTATTGCCTTCAATGTGCATACTCTCTTAATCTCTTCAAAAAATGCTTTTTTTTGTACAATGATGTCTCGTATTTGAAGTGCATTTCATTGGCAACTGGAACACATTTCAGAGCTGTTTAGTTTTTTGTTCCGCAATATGTTGGGTCATGTTTTGATTTCTGTGTAATAGAAGGATAAATTATAATAGAGGATTAGTGTTCTTAAGACTAATAGAAGTGGGTTCTATTAAAGTTTAAGTGTACTAAAATTGTATTCAATATATTCAATCATGCAAACTGGAAAGTTCTCTGTGACAATGCAAATTGAAAAAAGGACTCAGCATTTTGTGACCCTGCATTAAATTGTTTTATGTGAATGCGGTCTGCTTTTTCCTGGTTGTGTTGGCATATATAGTTAAACATGCTGTACTACCTGATAACATAACATCCTTCTTGCGGCAATAAGCTAATAAGTAGTTCGACAAATCACCACTAGCTGTGCTAGAGCTCATATCTGATGTGGGAAATTTTGTGATTGGTACTGATTTAGTTGAAAGACTTGGGTCCTATCAATTTCAAGTTGTACAAATCTTTCATTAAAACTACATAAATTTTCAGGCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTCGTGAGTTTCTCGTGAATCTCTTATCCCCCCTCCCCCTTGCTCTCTGTTTTCTTTTTCGTTCAGTACTTTCAGTTGCCCTGCCCCCCCCCCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGACTTTTACGTGTATTTCTGATAAATAAAGCTCTCTGTTGTCTTTTTTGTTCTCTGCTTTCAGTTGCCCGTCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGGCTTTTACGTGTATTTCTGATAAAGAATGTTCTGTTAAGTGTAAACTTCCATCCCTTTAAAGAAAAGGATAAGGATTTCAGGGTATCTGCAGATTTTGTGATAGAGGGTTTTGCCAGGTGCATTTCAACAATAATATGGGTCAATCACTTAAAGTACACTACATTCAATATGCATTTTTATGGCATAGCATGGAAAGACCTTTCTAAATGAATTGTTGTTCCATTCTCATGTTTGGCCTGAAAAATGGAAGCTTCTTCTATGATATGGAAAAAATGCCAAGCACCGACTATTGAAATTGCTGCTCATTTGGTTTACAATTGTATTTCTTGTCTCTTTAATTTCAAAATGCCCAATATATAGTACATCCAGACTTTTTGCATATTTAACCAGCTTATGTAGAAAAGATTCCATATTCTACGCCAATAGATACATGACATCCATTAAGTTATCATTCTCAAAAAAAAAAGATTCATGACATCCATGTACTGAATCGTCAAAAGAGCCATGCTAAGAAAGCCAAGCTTATACTTGTTGGCCCATGCCGATCAGAGAAAACACTCCTATACTGTGTCTAGTGGGGAGCTTTTTCATCTCAAAGAATAAGCAGATCTTCATATTTTGCATTTTACATTACCTTGTAGAAAGAAGAAAAAAGATATTGTGCATTGCTTAAATTTATACTGCCAGGATAAAAAGGAAGTGATCAAGACCTGCTTACAGAATTCAACTAGCTATATAGTTGTATTTTAGTTGAATTATTTGTGCTGCTCTTTGGCAAACAGGATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACCCGTCCTGGTAAACTGAGTGATCGTTTTCCTCAGCCATATCCAAATGAAGCAGCTGCTAGATTTGCTAATGGGGGAGCCTACCCTCCAGATTTAAGTCTTATTACAAAAGTATTTCCGCCATTCTGTTTCTGTTTTTTTTAAAGAAAAATCTCCTTTCTGTTCCTATTTCAGTCGTTACTGTTATCTGCCCCATTTAGCTTTCATTCTGTTTCTCAGGCACGCCATAATGGTCAAAACTATGTGTTTGCTCTTCTTACTGGCTATCGTGATCCTCCTGCTGGTGTTTCGGTATGCATCTTTGTCCTTTGTGTATCTTAGACTCTTTAAGTTTTCAATCTTGAAGCCTTTATACCTTCTGCACTTTTGGTTTTTGGCTTCCCATATGATTTTTTTTCTTTTGATAACAAAGAAAATCCCTGAGTGGTAGAATGGGCCTTTTAGTAGAAATGTTTTTTTCCCTTTATTACATAGCTGGTTGTGTGGCCTGAGCAACTTTTTCAAGTGGAAGTAATTCTCATTCACGTTTCTCTCTAAACATTTGAATCCAAATGTTGTCTCTAATTTTTATTTTTTAAAAATTCTTTTTGTTATGTAACCTTGTGTTGTGGTAAAAAAAGGAAATTACTCCTAACATGTGCCACAAGAACATTGTGACACAGTGATTTCTTGTTTCCGACTGTAAACAAAGTAGGATAAGTCTCCAACCTTTATCTTGATGTATTTGACTCTGCAGCTGAGAGGACAGGAGGACAGGTTTCTGAACTGCTTTGACACTGATAGGCATCTTACTCTATGTAATCTTAAGCTGCAACTTGAATTTAAATCAACAATCCTACAGTACAAATTCATTAATTTAATCAAATCACTTCTGGAAATAGAGTAGTGAGAGGATCAGAGTATGTTGGATCACCTTTAGTTGCATAGGATCTCACATGAGAGTTTATGATCCTGTTTATTGGATTGTATTAGATAAAATTCAGACAGTAGATCTTAAGGTTTCACTCCGTCACACTGATCCTAGTATCCTACTAATTTGTCAGCTGTATGAAATTCCCATATTGTATTTTGTTATCTTGTATTGGCTGTGCAACAAATTCCAAGAGCAACAGGTGCAAATAAACCGTATAATATAATAATTAACCATGTATATTTGCTTGGATCTTGAAGTCCTACTATGATCCATCATGGGATCCTAAAATGATCCTATCTAGGATCTCCATTCTAGAAACATCTCATGGTGCATTTGTTGGTTTGCTTACTTAGCTTCCTGATTGTTGTGGTTGTTTGTGAGCATAATATAATCAAGTCAACCATTTTATTAGCTGAAGATAATTAGATTACTAGATTTTTTTGTCCACACAATACTGGCGTTCCTTGTCTCTTTCACTGATCTGTCAAGCTACAACCATACTATAGATTCGTGAAGGACTGCACTACAATCCTTACTTCCCTGGTGGAGCTATTGCAATGCCAAAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTGTCCCTGCAACAGAAGCTCAGGTTGGTCCCTTTGTCACTTGATTGGAGGGTGTCTGCATGTAGTTTCATAGAGATGATCTACACTACTATGTTTCAGTATAAATAAGCTAATTTTTCCTTGTATCGTTGTGTAGATGGGGAAAGATGTGGTGTCATTTTTAACTTGGGCTGCTGAACCAGAAATGGAAGAGAGAAAACTGGTCTGTTGTTTTTGGTATTTGCACAGATGATGATGTTTGTGTTATTACTATATGGTAGTTTGTGATGTATTTGCATTTCCACTGCAGATGGGCTTCAAGTGGATATTTGTACTGTCCCTTGCACTGCTTCAAGCTGCTTACTACAGGCGTTTGAGGTGGTCTGTTCTCAAGTCACGTAAGCTGGTCCTTGATGTTGTCAATTAGAACATCCCCTATTCAAATGCTTGTGGAGCAGGCAAATAATATTATCTTTCTCAAAATGTTTTTGTTGTTTGGCGTCTTACTCTTGAATGGCCTGGTTTTTGGTAAAGCAAACAGGCTAAAATTTTCTTATATTTGGAGTTCAAATAAGAAGAGGCCCGTGTAATTTTCAAGTTGTGATTTTTATAGTGGGGAGACATTCTCGCCTTGTTTTTGAAGCTGTAATCCCTGTTTGTGAGCTGTCTGTCTGACTGTTGTGAAACTTTGCTCTCCAGATTTATAGTTTTGTGACTTGACATACAATTTTATTGCACGTAAAAAGAACCTATTCCAAGGGTTACCAAAACGATTAATCAAA</genome_strand>
        <mrna_strand>GAGCTCGTCCTGGAGCAAAACCTCCTCCTCTTAGAATTTTCTGAATAGTTTTGAAGACTAGACTGGTTTTCCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCG................................................................................................................................................................................................................................................................................AGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACCCGTCCTGGTAAACTGAGTGATCGTTTTCCTCAGCCATATCCAAATGAAGCAGCTGCTAGATTTGCTAATGGGGGAGCCTACCCTCCAGATTTAAGTCTTATTACAAAA............................................................................................................GCACGCCATAATGGTCAAAACTATGTGTTTGCTCTTCTTACTGGCTATCGTGATCCTCCTGCTGGTGTTTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCGTGAAGGACTGCACTACAATCCTTACTTCCCTGGTGGAGCTATTGCAATGCCAAAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTGTCCCTGCAACAGAAGCTCAG.................................................................................................................ATGGGGAAAGATGTGGTGTCATTTTTAACTTGGGCTGCTGAACCAGAAATGGAAGAGAGAAAACTG.......................................................................................ATGGGCTTCAAGTGGATATTTGTACTGTCCCTTGCACTGCTTCAAGCTGCTTACTACAGGCGTTTGAGGTGGTCTGTTCTCAAGTCACGTAAGCTGGTCCTTGATGTTGTCAATTAGAACATCCCCTATTCAAATGCTTGTGGAGCAGGCAAATAATATTATCTTTCTCAAAATGTTTTTGTTGTTTGGCGTCTTACTCTTGAATGGCCTGGTTTTTGGTAAAGCAAACAGGCTAAAATTTTCTTATATTTGGAGTTCAAATAAGAAGAGGCCCGTGTAATTTTCAAGTTGTGATTTTTATAGTGGGGAGACATTCTCGCCTTGTTTTTGAAGCTGTAATCCCTGTTTGTGAGCTGTCTGTCTGACTGTTGTGAAACTTTGCTCTCCAGATTTATAGTTTTGTGACTTGACATACAATTTTATTGCACGTAAAAAGAACCTATTCCAAGGGTTCCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E267257" ref_strand="+" ref_description="SGN-E267257 [cLEI-4-N9]">
      <seq>cttaatgatggtgctgttgagtatgaagatggtgtccctgcaacagaagctcagatggggaaagatgtggtgtcatttttaacttgggctgctgaaccagaaatggaagagagaaaactgatgggcttcaagtggatatttgtactgtcccttgcactgcttcaagctgcttactacaggcgtttgaggtggtctgttctcaagtcacgtaagctggtccttgatgttgtcaattagaacatcccctattcaaatgcttgtggagcaggcaaataatattatctttctcaaaatgtttttgttgtttggcgtcttactcttgaatggcctggtttttggtaaagcaaacaggctaaaattttcttatatttggagttcaaataagaagaggcccgtgtaattttcaagttgtgatttttatagtggggagacattctcgccttgtttttgaagctgtaatccctgtttgtgagctgtctgtctgactgttgtgaaactttgctctccagatttatagttttgtgacttgacatacaattttattgcacgtaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="23310" stop="21955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23010" g_stop="22957" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22956" i_stop="22844" i_length="113">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22843" g_stop="22778" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="120" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22777" i_stop="22691" i_length="87">
            <donor d_prob="0.380" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22690" g_stop="22255" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="556" r_length="436" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E267257" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267257" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23010" e_stop="22957"/>
          <exon e_start="22843" e_stop="22778"/>
          <exon e_start="22690" e_stop="22255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAATGATGGTGCTGTTGAGTATGAAGATGGTGTCCCTGCAACAGAAGCTCAGGTTGGTCCCTTTGTCACTTGATTGGAGGGTGTCTGCATGTAGTTTCATAGAGATGATCTACACTACTATGTTTCAGTATAAATAAGCTAATTTTTCCTTGTATCGTTGTGTAGATGGGGAAAGATGTGGTGTCATTTTTAACTTGGGCTGCTGAACCAGAAATGGAAGAGAGAAAACTGGTCTGTTGTTTTTGGTATTTGCACAGATGATGATGTTTGTGTTATTACTATATGGTAGTTTGTGATGTATTTGCATTTCCACTGCAGATGGGCTTCAAGTGGATATTTGTACTGTCCCTTGCACTGCTTCAAGCTGCTTACTACAGGCGTTTGAGGTGGTCTGTTCTCAAGTCACGTAAGCTGGTCCTTGATGTTGTCAATTAGAACATCCCCTATTCAAATGCTTGTGGAGCAGGCAAATAATATTATCTTTCTCAAAATGTTTTTGTTGTTTGGCGTCTTACTCTTGAATGGCCTGGTTTTTGGTAAAGCAAACAGGCTAAAATTTTCTTATATTTGGAGTTCAAATAAGAAGAGGCCCGTGTAATTTTCAAGTTGTGATTTTTATAGTGGGGAGACATTCTCGCCTTGTTTTTGAAGCTGTAATCCCTGTTTGTGAGCTGTCTGTCTGACTGTTGTGAAACTTTGCTCTCCAGATTTATAGTTTTGTGACTTGACATACAATTTTATTGCACGTAAAAAG</genome_strand>
        <mrna_strand>CTTAATGATGGTGCTGTTGAGTATGAAGATGGTGTCCCTGCAACAGAAGCTCAG.................................................................................................................ATGGGGAAAGATGTGGTGTCATTTTTAACTTGGGCTGCTGAACCAGAAATGGAAGAGAGAAAACTG.......................................................................................ATGGGCTTCAAGTGGATATTTGTACTGTCCCTTGCACTGCTTCAAGCTGCTTACTACAGGCGTTTGAGGTGGTCTGTTCTCAAGTCACGTAAGCTGGTCCTTGATGTTGTCAATTAGAACATCCCCTATTCAAATGCTTGTGGAGCAGGCAAATAATATTATCTTTCTCAAAATGTTTTTGTTGTTTGGCGTCTTACTCTTGAATGGCCTGGTTTTTGGTAAAGCAAACAGGCTAAAATTTTCTTATATTTGGAGTTCAAATAAGAAGAGGCCCGTGTAATTTTCAAGTTGTGATTTTTATAGTGGGGAGACATTCTCGCCTTGTTTTTGAAGCTGTAATCCCTGTTTGTGAGCTGTCTGTCTGACTGTTGTGAAACTTTGCTCTCCAGATTTATAGTTTTGTGACTTGACATACAATTTTATTGCACGTAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E714206" ref_strand="+" ref_description="SGN-E714206 [FB10DC04]">
      <seq>tttcgattcgtgaaggactgcactacaatccttacttccctggtggagctattgcaatgccaaaaatgcttaatgatggtgctgttgagtatgaagatggtgtccctgcaacagaagctcagatggggaaagatgtggtgtcatttttaacttgggctgctgaaccagaaatggaagagagaaaactgatgggcttcaagtggatatttgtactgtcccttgcactgcttcaagctgcttactacaggcgtttgaggtggtctgttctcaagtcacgtaagctggtccttgatgttgtcaattagaacatcccctattcaaatgcttgtggagcaggcaaataatattatctttctcaaaatgtttttgttgtttggcgtcttactcttgaatggcctggtttttggtaaagcaaacaggctaaaattttcttatatttggagttcaaataagaagaggcccgtgtaattttcaagttgtgatttttatagtggggagacattctcgccttgtttttgaagctgtaatccctgtttgtgagctgtctgtctgactgttgtgaaactttgctctccagatttatagttttgtgacttgacataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="23378" stop="21974"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23078" g_stop="22957" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22956" i_stop="22844" i_length="113">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22843" g_stop="22778" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="188" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22777" i_stop="22691" i_length="87">
            <donor d_prob="0.380" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22690" g_stop="22268" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="611" r_length="423" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E714206" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23078" e_stop="22957"/>
          <exon e_start="22843" e_stop="22778"/>
          <exon e_start="22690" e_stop="22268"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAGATTCGTGAAGGACTGCACTACAATCCTTACTTCCCTGGTGGAGCTATTGCAATGCCAAAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTGTCCCTGCAACAGAAGCTCAGGTTGGTCCCTTTGTCACTTGATTGGAGGGTGTCTGCATGTAGTTTCATAGAGATGATCTACACTACTATGTTTCAGTATAAATAAGCTAATTTTTCCTTGTATCGTTGTGTAGATGGGGAAAGATGTGGTGTCATTTTTAACTTGGGCTGCTGAACCAGAAATGGAAGAGAGAAAACTGGTCTGTTGTTTTTGGTATTTGCACAGATGATGATGTTTGTGTTATTACTATATGGTAGTTTGTGATGTATTTGCATTTCCACTGCAGATGGGCTTCAAGTGGATATTTGTACTGTCCCTTGCACTGCTTCAAGCTGCTTACTACAGGCGTTTGAGGTGGTCTGTTCTCAAGTCACGTAAGCTGGTCCTTGATGTTGTCAATTAGAACATCCCCTATTCAAATGCTTGTGGAGCAGGCAAATAATATTATCTTTCTCAAAATGTTTTTGTTGTTTGGCGTCTTACTCTTGAATGGCCTGGTTTTTGGTAAAGCAAACAGGCTAAAATTTTCTTATATTTGGAGTTCAAATAAGAAGAGGCCCGTGTAATTTTCAAGTTGTGATTTTTATAGTGGGGAGACATTCTCGCCTTGTTTTTGAAGCTGTAATCCCTGTTTGTGAGCTGTCTGTCTGACTGTTGTGAAACTTTGCTCTCCAGATTTATAGTTTTGTGACTTGACATACAATTTTAT</genome_strand>
        <mrna_strand>TTTCGATTCGTGAAGGACTGCACTACAATCCTTACTTCCCTGGTGGAGCTATTGCAATGCCAAAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTGTCCCTGCAACAGAAGCTCAG.................................................................................................................ATGGGGAAAGATGTGGTGTCATTTTTAACTTGGGCTGCTGAACCAGAAATGGAAGAGAGAAAACTG.......................................................................................ATGGGCTTCAAGTGGATATTTGTACTGTCCCTTGCACTGCTTCAAGCTGCTTACTACAGGCGTTTGAGGTGGTCTGTTCTCAAGTCACGTAAGCTGGTCCTTGATGTTGTCAATTAGAACATCCCCTATTCAAATGCTTGTGGAGCAGGCAAATAATATTATCTTTCTCAAAATGTTTTTGTTGTTTGGCGTCTTACTCTTGAATGGCCTGGTTTTTGGTAAAGCAAACAGGCTAAAATTTTCTTATATTTGGAGTTCAAATAAGAAGAGGCCCGTGTAATTTTCAAGTTGTGATTTTTATAGTGGGGAGACATTCTCGCCTTGTTTTTGAAGCTGTAATCCCTGTTTGTGAGCTGTCTGTCTGACTGTTGTGAAACTTTGCTCTCCAGATTTATAGTTTTGTGACTTGACATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E731994" ref_strand="+" ref_description="SGN-E731994 [LB01AA03]">
      <seq>ctcttcttactggctatcgtgatcctcctgctggtgtttcgattcgtgaaggactgcactacaatccttacttccctggtggagctattgcaatgccaaaaatgcttaatgatggtgctgttgagtatgaagatggtgtccctgcaacagaagctcagatggggaaagatgtggtgtcatttttaacttgggctgctgaaccagaaatggaagagagaaaactgatgggcttcaagtggatatttgtactgtcccttgcactgcttcaagctgcttactacaggcgtttgaggtggtctgttctcaagtcacgtaagctggtccttgatgttgtcaattagaacatcccctattcaaatgcttgtggagcaggcaaataatattatctttctcaaaatgtttttgttgtttggcgtcttactcttgaatggcctggtttttggtaaagcaaacaggctaaaattttcttatatttggagttcaaataagaagaggcccgtgtaattttcaagttgtgatttttatagtggggagacattctcgccttgtttttgaagctgtaatccctgtttgtgagctgtctgtctgactgttgtgaaactttgctctccagatttatagttttgtgacttgacataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="24542" stop="21974"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24242" g_stop="24202" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24201" i_stop="23074" i_length="1128">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.571" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23073" g_stop="22957" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="158" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22956" i_stop="22844" i_length="113">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22843" g_stop="22778" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="224" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22777" i_stop="22691" i_length="87">
            <donor d_prob="0.380" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22690" g_stop="22275" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="640" r_length="416" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="641" polyA_stop="650"/>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E731994" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731994" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24242" e_stop="24202"/>
          <exon e_start="23073" e_stop="22957"/>
          <exon e_start="22843" e_stop="22778"/>
          <exon e_start="22690" e_stop="22275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTCTTACTGGCTATCGTGATCCTCCTGCTGGTGTTTCGGTATGCATCTTTGTCCTTTGTGTATCTTAGACTCTTTAAGTTTTCAATCTTGAAGCCTTTATACCTTCTGCACTTTTGGTTTTTGGCTTCCCATATGATTTTTTTTCTTTTGATAACAAAGAAAATCCCTGAGTGGTAGAATGGGCCTTTTAGTAGAAATGTTTTTTTCCCTTTATTACATAGCTGGTTGTGTGGCCTGAGCAACTTTTTCAAGTGGAAGTAATTCTCATTCACGTTTCTCTCTAAACATTTGAATCCAAATGTTGTCTCTAATTTTTATTTTTTAAAAATTCTTTTTGTTATGTAACCTTGTGTTGTGGTAAAAAAAGGAAATTACTCCTAACATGTGCCACAAGAACATTGTGACACAGTGATTTCTTGTTTCCGACTGTAAACAAAGTAGGATAAGTCTCCAACCTTTATCTTGATGTATTTGACTCTGCAGCTGAGAGGACAGGAGGACAGGTTTCTGAACTGCTTTGACACTGATAGGCATCTTACTCTATGTAATCTTAAGCTGCAACTTGAATTTAAATCAACAATCCTACAGTACAAATTCATTAATTTAATCAAATCACTTCTGGAAATAGAGTAGTGAGAGGATCAGAGTATGTTGGATCACCTTTAGTTGCATAGGATCTCACATGAGAGTTTATGATCCTGTTTATTGGATTGTATTAGATAAAATTCAGACAGTAGATCTTAAGGTTTCACTCCGTCACACTGATCCTAGTATCCTACTAATTTGTCAGCTGTATGAAATTCCCATATTGTATTTTGTTATCTTGTATTGGCTGTGCAACAAATTCCAAGAGCAACAGGTGCAAATAAACCGTATAATATAATAATTAACCATGTATATTTGCTTGGATCTTGAAGTCCTACTATGATCCATCATGGGATCCTAAAATGATCCTATCTAGGATCTCCATTCTAGAAACATCTCATGGTGCATTTGTTGGTTTGCTTACTTAGCTTCCTGATTGTTGTGGTTGTTTGTGAGCATAATATAATCAAGTCAACCATTTTATTAGCTGAAGATAATTAGATTACTAGATTTTTTTGTCCACACAATACTGGCGTTCCTTGTCTCTTTCACTGATCTGTCAAGCTACAACCATACTATAGATTCGTGAAGGACTGCACTACAATCCTTACTTCCCTGGTGGAGCTATTGCAATGCCAAAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTGTCCCTGCAACAGAAGCTCAGGTTGGTCCCTTTGTCACTTGATTGGAGGGTGTCTGCATGTAGTTTCATAGAGATGATCTACACTACTATGTTTCAGTATAAATAAGCTAATTTTTCCTTGTATCGTTGTGTAGATGGGGAAAGATGTGGTGTCATTTTTAACTTGGGCTGCTGAACCAGAAATGGAAGAGAGAAAACTGGTCTGTTGTTTTTGGTATTTGCACAGATGATGATGTTTGTGTTATTACTATATGGTAGTTTGTGATGTATTTGCATTTCCACTGCAGATGGGCTTCAAGTGGATATTTGTACTGTCCCTTGCACTGCTTCAAGCTGCTTACTACAGGCGTTTGAGGTGGTCTGTTCTCAAGTCACGTAAGCTGGTCCTTGATGTTGTCAATTAGAACATCCCCTATTCAAATGCTTGTGGAGCAGGCAAATAATATTATCTTTCTCAAAATGTTTTTGTTGTTTGGCGTCTTACTCTTGAATGGCCTGGTTTTTGGTAAAGCAAACAGGCTAAAATTTTCTTATATTTGGAGTTCAAATAAGAAGAGGCCCGTGTAATTTTCAAGTTGTGATTTTTATAGTGGGGAGACATTCTCGCCTTGTTTTTGAAGCTGTAATCCCTGTTTGTGAGCTGTCTGTCTGACTGTTGTGAAACTTTGCTCTCCAGATTTATAGTTTTGTGACTTGACATACA</genome_strand>
        <mrna_strand>CTCTTCTTACTGGCTATCGTGATCCTCCTGCTGGTGTTTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCGTGAAGGACTGCACTACAATCCTTACTTCCCTGGTGGAGCTATTGCAATGCCAAAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTGTCCCTGCAACAGAAGCTCAG.................................................................................................................ATGGGGAAAGATGTGGTGTCATTTTTAACTTGGGCTGCTGAACCAGAAATGGAAGAGAGAAAACTG.......................................................................................ATGGGCTTCAAGTGGATATTTGTACTGTCCCTTGCACTGCTTCAAGCTGCTTACTACAGGCGTTTGAGGTGGTCTGTTCTCAAGTCACGTAAGCTGGTCCTTGATGTTGTCAATTAGAACATCCCCTATTCAAATGCTTGTGGAGCAGGCAAATAATATTATCTTTCTCAAAATGTTTTTGTTGTTTGGCGTCTTACTCTTGAATGGCCTGGTTTTTGGTAAAGCAAACAGGCTAAAATTTTCTTATATTTGGAGTTCAAATAAGAAGAGGCCCGTGTAATTTTCAAGTTGTGATTTTTATAGTGGGGAGACATTCTCGCCTTGTTTTTGAAGCTGTAATCCCTGTTTGTGAGCTGTCTGTCTGACTGTTGTGAAACTTTGCTCTCCAGATTTATAGTTTTGTGACTTGACATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E297474" ref_strand="+" ref_description="SGN-E297474 [cLET-28-C11]">
      <seq>ttcgattcgtgaaggactgcactacaatccttacttccctggtggagctattgcaatgccaaaaatgcttaatgatggtgctgttgagtatgaagatggtgtccctgcaacagaagctcagatggggaaagatgtggtgtcatttttaacttgggctgctgaaccagaaatggaagagagaaaactgatgggcttcaagtggatatttgtactgtcccttgcactgcttcaagctgcttactacaggcgtttgaggtggtctgttctcaagtcacgtaagctggtccttgatgttgtcaattagaacatcccctattcaaatgcttgtggagcaggcaaataatattatctttctcaaaatgtttttgttgtttggcgtcttactcttgaatggcctggtttttggtaaagcaaacaggctaaaattttcttatatttggagttcaaataagaagaggcccgtgtaattttcaagttgtgatttttatagtggggagacattctcgccttgtttttgaagctgtaatccctgtttgtgagctgtctgtctgactgttgtgaaactttgctctccagatttatagttgtgtgacttgacataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="23376" stop="21974"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23073" g_stop="22957" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="121" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22956" i_stop="22844" i_length="113">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22843" g_stop="22778" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="187" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22777" i_stop="22691" i_length="87">
            <donor d_prob="0.380" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22690" g_stop="22275" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="603" r_length="416" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="604" polyA_stop="614"/>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E297474" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23073" e_stop="22957"/>
          <exon e_start="22843" e_stop="22778"/>
          <exon e_start="22690" e_stop="22275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCGTGAAGGACTGCACTACAATCCTTACTTCCCTGGTGGAGCTATTGCAATGCCAAAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTGTCCCTGCAACAGAAGCTCAGGTTGGTCCCTTTGTCACTTGATTGGAGGGTGTCTGCATGTAGTTTCATAGAGATGATCTACACTACTATGTTTCAGTATAAATAAGCTAATTTTTCCTTGTATCGTTGTGTAGATGGGGAAAGATGTGGTGTCATTTTTAACTTGGGCTGCTGAACCAGAAATGGAAGAGAGAAAACTGGTCTGTTGTTTTTGGTATTTGCACAGATGATGATGTTTGTGTTATTACTATATGGTAGTTTGTGATGTATTTGCATTTCCACTGCAGATGGGCTTCAAGTGGATATTTGTACTGTCCCTTGCACTGCTTCAAGCTGCTTACTACAGGCGTTTGAGGTGGTCTGTTCTCAAGTCACGTAAGCTGGTCCTTGATGTTGTCAATTAGAACATCCCCTATTCAAATGCTTGTGGAGCAGGCAAATAATATTATCTTTCTCAAAATGTTTTTGTTGTTTGGCGTCTTACTCTTGAATGGCCTGGTTTTTGGTAAAGCAAACAGGCTAAAATTTTCTTATATTTGGAGTTCAAATAAGAAGAGGCCCGTGTAATTTTCAAGTTGTGATTTTTATAGTGGGGAGACATTCTCGCCTTGTTTTTGAAGCTGTAATCCCTGTTTGTGAGCTGTCTGTCTGACTGTTGTGAAACTTTGCTCTCCAGATTTATAGTTTTGTGACTTGACATACA</genome_strand>
        <mrna_strand>ATTCGTGAAGGACTGCACTACAATCCTTACTTCCCTGGTGGAGCTATTGCAATGCCAAAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTGTCCCTGCAACAGAAGCTCAG.................................................................................................................ATGGGGAAAGATGTGGTGTCATTTTTAACTTGGGCTGCTGAACCAGAAATGGAAGAGAGAAAACTG.......................................................................................ATGGGCTTCAAGTGGATATTTGTACTGTCCCTTGCACTGCTTCAAGCTGCTTACTACAGGCGTTTGAGGTGGTCTGTTCTCAAGTCACGTAAGCTGGTCCTTGATGTTGTCAATTAGAACATCCCCTATTCAAATGCTTGTGGAGCAGGCAAATAATATTATCTTTCTCAAAATGTTTTTGTTGTTTGGCGTCTTACTCTTGAATGGCCTGGTTTTTGGTAAAGCAAACAGGCTAAAATTTTCTTATATTTGGAGTTCAAATAAGAAGAGGCCCGTGTAATTTTCAAGTTGTGATTTTTATAGTGGGGAGACATTCTCGCCTTGTTTTTGAAGCTGTAATCCCTGTTTGTGAGCTGTCTGTCTGACTGTTGTGAAACTTTGCTCTCCAGATTTATAGTTGTGTGACTTGACATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E202238" ref_strand="-" ref_description="SGN-E202238 [cLEC-6-C3]">
      <seq>atgccaaaaatgcttaatgatggtgctgttgagtatgaagatggtgtccctgcaacagaagctcagatggggaaagatgtggtgtcatttttaacttgggctgctgaaccagaaatggaagagagaaaactgatgggcttcaagtggatatttgtactgtcccttgcactgcttcaagctgcttactacaggcgtttgaggtggtctgttctcaagtcacgtaagctggtccttgatgttgtcaattagaacatcccctattcaaatgcttgtggagcaggcaaataatattatctttctcaaaatgtttttgttgtttggcgtcttactcttgaatggcctggtttttggtaaagcaaacaggctaaaattttcttatatttggagttcaaataagaagaggcccgtgtaattttcaagttgtgatttttatagtggggagacattctcgccttgtttttgaagctgtaatccctgtttgtgagctgtctgtctgactgttgtgaaactttgctctccagatttatagttttgtgacttgacataaaaaaaaaaaaaaaaaactgagactagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="23322" stop="21974"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23022" g_stop="22957" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22956" i_stop="22844" i_length="113">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22843" g_stop="22778" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="132" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22777" i_stop="22691" i_length="87">
            <donor d_prob="0.380" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22690" g_stop="22275" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="548" r_length="416" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="549" polyA_stop="564"/>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E202238" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202238" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="23022" e_stop="22957"/>
          <exon e_start="22843" e_stop="22778"/>
          <exon e_start="22690" e_stop="22275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCCAAAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTGTCCCTGCAACAGAAGCTCAGGTTGGTCCCTTTGTCACTTGATTGGAGGGTGTCTGCATGTAGTTTCATAGAGATGATCTACACTACTATGTTTCAGTATAAATAAGCTAATTTTTCCTTGTATCGTTGTGTAGATGGGGAAAGATGTGGTGTCATTTTTAACTTGGGCTGCTGAACCAGAAATGGAAGAGAGAAAACTGGTCTGTTGTTTTTGGTATTTGCACAGATGATGATGTTTGTGTTATTACTATATGGTAGTTTGTGATGTATTTGCATTTCCACTGCAGATGGGCTTCAAGTGGATATTTGTACTGTCCCTTGCACTGCTTCAAGCTGCTTACTACAGGCGTTTGAGGTGGTCTGTTCTCAAGTCACGTAAGCTGGTCCTTGATGTTGTCAATTAGAACATCCCCTATTCAAATGCTTGTGGAGCAGGCAAATAATATTATCTTTCTCAAAATGTTTTTGTTGTTTGGCGTCTTACTCTTGAATGGCCTGGTTTTTGGTAAAGCAAACAGGCTAAAATTTTCTTATATTTGGAGTTCAAATAAGAAGAGGCCCGTGTAATTTTCAAGTTGTGATTTTTATAGTGGGGAGACATTCTCGCCTTGTTTTTGAAGCTGTAATCCCTGTTTGTGAGCTGTCTGTCTGACTGTTGTGAAACTTTGCTCTCCAGATTTATAGTTTTGTGACTTGACATACA</genome_strand>
        <mrna_strand>ATGCCAAAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTGTCCCTGCAACAGAAGCTCAG.................................................................................................................ATGGGGAAAGATGTGGTGTCATTTTTAACTTGGGCTGCTGAACCAGAAATGGAAGAGAGAAAACTG.......................................................................................ATGGGCTTCAAGTGGATATTTGTACTGTCCCTTGCACTGCTTCAAGCTGCTTACTACAGGCGTTTGAGGTGGTCTGTTCTCAAGTCACGTAAGCTGGTCCTTGATGTTGTCAATTAGAACATCCCCTATTCAAATGCTTGTGGAGCAGGCAAATAATATTATCTTTCTCAAAATGTTTTTGTTGTTTGGCGTCTTACTCTTGAATGGCCTGGTTTTTGGTAAAGCAAACAGGCTAAAATTTTCTTATATTTGGAGTTCAAATAAGAAGAGGCCCGTGTAATTTTCAAGTTGTGATTTTTATAGTGGGGAGACATTCTCGCCTTGTTTTTGAAGCTGTAATCCCTGTTTGTGAGCTGTCTGTCTGACTGTTGTGAAACTTTGCTCTCCAGATTTATAGTTTTGTGACTTGACATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E374681" ref_strand="-" ref_description="SGN-E374681 [TUS-14-B8]">
      <seq>aaaatgcttaatgatggtgctgttgagtatgaagatggtgtccctgcaacagaagctcagatggggaaagatgtggtgtcatttttaacttgggctgctgaaccagaaatggaagagagaaaactgatgggcttcaagtggatatttgtactgtcccttgcactgcttcaagctgcttactacaggcgtttgaggtggtctgttctcaagtcacgtaagctggtccttgatgttgtcaattagaacatcccctattcaaatgcttgtggagcaggcaaataatattatctttctcaaaatgtttttgttgtttggcgtcttactcttgaatggcctggtttttggtaaagcaaacaggctaaaattttcttatatttggagttcaaataagaagaggcccgtgtaattttcaagttgtgatttttatagtggggagacattctcgccttgtttttgaagctgtaatccctgtttgtgagctgtctgtctgactgttgtgaaactttgctctccagatttatagttttgtgacttgacataaaaaaaaaaaaaaaaaactgagactagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="23316" stop="21974"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23016" g_stop="22957" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22956" i_stop="22844" i_length="113">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22843" g_stop="22778" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="126" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22777" i_stop="22691" i_length="87">
            <donor d_prob="0.380" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22690" g_stop="22275" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="542" r_length="416" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="543" polyA_stop="558"/>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E374681" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374681" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="23016" e_stop="22957"/>
          <exon e_start="22843" e_stop="22778"/>
          <exon e_start="22690" e_stop="22275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTGTCCCTGCAACAGAAGCTCAGGTTGGTCCCTTTGTCACTTGATTGGAGGGTGTCTGCATGTAGTTTCATAGAGATGATCTACACTACTATGTTTCAGTATAAATAAGCTAATTTTTCCTTGTATCGTTGTGTAGATGGGGAAAGATGTGGTGTCATTTTTAACTTGGGCTGCTGAACCAGAAATGGAAGAGAGAAAACTGGTCTGTTGTTTTTGGTATTTGCACAGATGATGATGTTTGTGTTATTACTATATGGTAGTTTGTGATGTATTTGCATTTCCACTGCAGATGGGCTTCAAGTGGATATTTGTACTGTCCCTTGCACTGCTTCAAGCTGCTTACTACAGGCGTTTGAGGTGGTCTGTTCTCAAGTCACGTAAGCTGGTCCTTGATGTTGTCAATTAGAACATCCCCTATTCAAATGCTTGTGGAGCAGGCAAATAATATTATCTTTCTCAAAATGTTTTTGTTGTTTGGCGTCTTACTCTTGAATGGCCTGGTTTTTGGTAAAGCAAACAGGCTAAAATTTTCTTATATTTGGAGTTCAAATAAGAAGAGGCCCGTGTAATTTTCAAGTTGTGATTTTTATAGTGGGGAGACATTCTCGCCTTGTTTTTGAAGCTGTAATCCCTGTTTGTGAGCTGTCTGTCTGACTGTTGTGAAACTTTGCTCTCCAGATTTATAGTTTTGTGACTTGACATACA</genome_strand>
        <mrna_strand>AAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTGTCCCTGCAACAGAAGCTCAG.................................................................................................................ATGGGGAAAGATGTGGTGTCATTTTTAACTTGGGCTGCTGAACCAGAAATGGAAGAGAGAAAACTG.......................................................................................ATGGGCTTCAAGTGGATATTTGTACTGTCCCTTGCACTGCTTCAAGCTGCTTACTACAGGCGTTTGAGGTGGTCTGTTCTCAAGTCACGTAAGCTGGTCCTTGATGTTGTCAATTAGAACATCCCCTATTCAAATGCTTGTGGAGCAGGCAAATAATATTATCTTTCTCAAAATGTTTTTGTTGTTTGGCGTCTTACTCTTGAATGGCCTGGTTTTTGGTAAAGCAAACAGGCTAAAATTTTCTTATATTTGGAGTTCAAATAAGAAGAGGCCCGTGTAATTTTCAAGTTGTGATTTTTATAGTGGGGAGACATTCTCGCCTTGTTTTTGAAGCTGTAATCCCTGTTTGTGAGCTGTCTGTCTGACTGTTGTGAAACTTTGCTCTCCAGATTTATAGTTTTGTGACTTGACATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E355253" ref_strand="+" ref_description="SGN-E355253 [cTOS-18-D9]">
      <seq>aatgcttaatgatggtgctgttgagtatgaagatggtgtccctgcaacagaagctcagatggggaaagatgtggtgtcatttttaacttgggctgctgaaccagaaatggaagagagaaaactgatgggcttcaagtggatatttgtactgtcccttgcactgcttcaagctgcttactacaggcgtttgaggtggtctgttctcaagtcacgtaagctggtccttgatgttgtcaattagaacatcccctattcaaatgcttgtggagcaggcaaataatattatctttctcaaaatgtttttgttgtttggcgtcttactcttgaatggcctggtttttggtaaagcaaacaggctaaaattttcttatatttggagttcaaataagaagaggcccgtgtaattttcaagttgtgatttttatagtggggagacattctcgccttgtttttgaagctgtaatccctgtttgtgagctgtctgtctgactgttgtgaaactttgctctccagatttatagttttgtgacttgacatacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="23314" stop="21974"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23014" g_stop="22957" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22956" i_stop="22844" i_length="113">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22843" g_stop="22778" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="124" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22777" i_stop="22691" i_length="87">
            <donor d_prob="0.380" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22690" g_stop="22275" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="540" r_length="416" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E355253" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23014" e_stop="22957"/>
          <exon e_start="22843" e_stop="22778"/>
          <exon e_start="22690" e_stop="22275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTGTCCCTGCAACAGAAGCTCAGGTTGGTCCCTTTGTCACTTGATTGGAGGGTGTCTGCATGTAGTTTCATAGAGATGATCTACACTACTATGTTTCAGTATAAATAAGCTAATTTTTCCTTGTATCGTTGTGTAGATGGGGAAAGATGTGGTGTCATTTTTAACTTGGGCTGCTGAACCAGAAATGGAAGAGAGAAAACTGGTCTGTTGTTTTTGGTATTTGCACAGATGATGATGTTTGTGTTATTACTATATGGTAGTTTGTGATGTATTTGCATTTCCACTGCAGATGGGCTTCAAGTGGATATTTGTACTGTCCCTTGCACTGCTTCAAGCTGCTTACTACAGGCGTTTGAGGTGGTCTGTTCTCAAGTCACGTAAGCTGGTCCTTGATGTTGTCAATTAGAACATCCCCTATTCAAATGCTTGTGGAGCAGGCAAATAATATTATCTTTCTCAAAATGTTTTTGTTGTTTGGCGTCTTACTCTTGAATGGCCTGGTTTTTGGTAAAGCAAACAGGCTAAAATTTTCTTATATTTGGAGTTCAAATAAGAAGAGGCCCGTGTAATTTTCAAGTTGTGATTTTTATAGTGGGGAGACATTCTCGCCTTGTTTTTGAAGCTGTAATCCCTGTTTGTGAGCTGTCTGTCTGACTGTTGTGAAACTTTGCTCTCCAGATTTATAGTTTTGTGACTTGACATACA</genome_strand>
        <mrna_strand>AATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTGTCCCTGCAACAGAAGCTCAG.................................................................................................................ATGGGGAAAGATGTGGTGTCATTTTTAACTTGGGCTGCTGAACCAGAAATGGAAGAGAGAAAACTG.......................................................................................ATGGGCTTCAAGTGGATATTTGTACTGTCCCTTGCACTGCTTCAAGCTGCTTACTACAGGCGTTTGAGGTGGTCTGTTCTCAAGTCACGTAAGCTGGTCCTTGATGTTGTCAATTAGAACATCCCCTATTCAAATGCTTGTGGAGCAGGCAAATAATATTATCTTTCTCAAAATGTTTTTGTTGTTTGGCGTCTTACTCTTGAATGGCCTGGTTTTTGGTAAAGCAAACAGGCTAAAATTTTCTTATATTTGGAGTTCAAATAAGAAGAGGCCCGTGTAATTTTCAAGTTGTGATTTTTATAGTGGGGAGACATTCTCGCCTTGTTTTTGAAGCTGTAATCCCTGTTTGTGAGCTGTCTGTCTGACTGTTGTGAAACTTTGCTCTCCAGATTTATAGTTTTGTGACTTGACATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E212280" ref_strand="-" ref_description="SGN-E212280 [cLEC-75-D10]">
      <seq>tgcttaatgatggtgctgttgagtatgaagatggtgtccctgcaacagaagctcagatggggaaagatgtggtgtcatttttaacttgggctgctgaaccagaaatggaagagagaaaactgatgggcttcaagtggatatttgtactgtcccttgcactgcttcaagctgcttactacaggcgtttgaggtggtctgttctcaagtcacgtaagctggtccttgatgttgtcaattagaacatcccctattcaaatgcttgtggagcaggcaaataatattatctttctcaaaatgtttttgttgtttggcgtcttactcttgaatggcctggtttttggtaaagcaaacaggctaaaattttcttatatttggagttcaaataagaagaggcccgtgtaattttcaagttgtgatttttatagtggggagacattctcgccttgtttttgaagctgtaatccctgtttgtgagctgtctgtctgactgttgtgaaactttgctctccagatttatagttttgtgacttgacataaaaaaaaaaaaaaaaaactgagactagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="23312" stop="21974"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23012" g_stop="22957" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22956" i_stop="22844" i_length="113">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22843" g_stop="22778" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="122" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22777" i_stop="22691" i_length="87">
            <donor d_prob="0.380" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22690" g_stop="22275" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="538" r_length="416" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="539" polyA_stop="554"/>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E212280" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212280" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="23012" e_stop="22957"/>
          <exon e_start="22843" e_stop="22778"/>
          <exon e_start="22690" e_stop="22275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTGTCCCTGCAACAGAAGCTCAGGTTGGTCCCTTTGTCACTTGATTGGAGGGTGTCTGCATGTAGTTTCATAGAGATGATCTACACTACTATGTTTCAGTATAAATAAGCTAATTTTTCCTTGTATCGTTGTGTAGATGGGGAAAGATGTGGTGTCATTTTTAACTTGGGCTGCTGAACCAGAAATGGAAGAGAGAAAACTGGTCTGTTGTTTTTGGTATTTGCACAGATGATGATGTTTGTGTTATTACTATATGGTAGTTTGTGATGTATTTGCATTTCCACTGCAGATGGGCTTCAAGTGGATATTTGTACTGTCCCTTGCACTGCTTCAAGCTGCTTACTACAGGCGTTTGAGGTGGTCTGTTCTCAAGTCACGTAAGCTGGTCCTTGATGTTGTCAATTAGAACATCCCCTATTCAAATGCTTGTGGAGCAGGCAAATAATATTATCTTTCTCAAAATGTTTTTGTTGTTTGGCGTCTTACTCTTGAATGGCCTGGTTTTTGGTAAAGCAAACAGGCTAAAATTTTCTTATATTTGGAGTTCAAATAAGAAGAGGCCCGTGTAATTTTCAAGTTGTGATTTTTATAGTGGGGAGACATTCTCGCCTTGTTTTTGAAGCTGTAATCCCTGTTTGTGAGCTGTCTGTCTGACTGTTGTGAAACTTTGCTCTCCAGATTTATAGTTTTGTGACTTGACATACA</genome_strand>
        <mrna_strand>TGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTGTCCCTGCAACAGAAGCTCAG.................................................................................................................ATGGGGAAAGATGTGGTGTCATTTTTAACTTGGGCTGCTGAACCAGAAATGGAAGAGAGAAAACTG.......................................................................................ATGGGCTTCAAGTGGATATTTGTACTGTCCCTTGCACTGCTTCAAGCTGCTTACTACAGGCGTTTGAGGTGGTCTGTTCTCAAGTCACGTAAGCTGGTCCTTGATGTTGTCAATTAGAACATCCCCTATTCAAATGCTTGTGGAGCAGGCAAATAATATTATCTTTCTCAAAATGTTTTTGTTGTTTGGCGTCTTACTCTTGAATGGCCTGGTTTTTGGTAAAGCAAACAGGCTAAAATTTTCTTATATTTGGAGTTCAAATAAGAAGAGGCCCGTGTAATTTTCAAGTTGTGATTTTTATAGTGGGGAGACATTCTCGCCTTGTTTTTGAAGCTGTAATCCCTGTTTGTGAGCTGTCTGTCTGACTGTTGTGAAACTTTGCTCTCCAGATTTATAGTTTTGTGACTTGACATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E353501" ref_strand="+" ref_description="SGN-E353501 [cTOS-15-E4]">
      <seq>agaaatggaagagagaaaactgatgggcttcaagtggatatttgtactgtcccttgcactgcttcaagctgcttactacaggcgtttgaggtggtctgttctcaagtcacgtaagctggtccttgatgttgtcaattagaacatcccctattcaaatgcttgtggagcaggcaaataatattatctttctcaaaatgtttttgttgtttggcgtcttactcttgaatggcctggtttttggtaaagcaaacaggctaaaattttcttatatttggagttcaaataagaagaagcccgtgtaattttcaaggtgtgatttttataatggggagacattctcgccttgtttttgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="23099" stop="22059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22799" g_stop="22778" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22777" i_stop="22691" i_length="87">
            <donor d_prob="0.380" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22690" g_stop="22359" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="354" r_length="332" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="355" polyA_stop="365"/>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E353501" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22799" e_stop="22778"/>
          <exon e_start="22690" e_stop="22359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATGGAAGAGAGAAAACTGGTCTGTTGTTTTTGGTATTTGCACAGATGATGATGTTTGTGTTATTACTATATGGTAGTTTGTGATGTATTTGCATTTCCACTGCAGATGGGCTTCAAGTGGATATTTGTACTGTCCCTTGCACTGCTTCAAGCTGCTTACTACAGGCGTTTGAGGTGGTCTGTTCTCAAGTCACGTAAGCTGGTCCTTGATGTTGTCAATTAGAACATCCCCTATTCAAATGCTTGTGGAGCAGGCAAATAATATTATCTTTCTCAAAATGTTTTTGTTGTTTGGCGTCTTACTCTTGAATGGCCTGGTTTTTGGTAAAGCAAACAGGCTAAAATTTTCTTATATTTGGAGTTCAAATAAGAAGAGGCCCGTGTAATTTTCAAGTTGTGATTTTTATAGTGGGGAGACATTCTCGCCTTGTTTTTGAA</genome_strand>
        <mrna_strand>AGAAATGGAAGAGAGAAAACTG.......................................................................................ATGGGCTTCAAGTGGATATTTGTACTGTCCCTTGCACTGCTTCAAGCTGCTTACTACAGGCGTTTGAGGTGGTCTGTTCTCAAGTCACGTAAGCTGGTCCTTGATGTTGTCAATTAGAACATCCCCTATTCAAATGCTTGTGGAGCAGGCAAATAATATTATCTTTCTCAAAATGTTTTTGTTGTTTGGCGTCTTACTCTTGAATGGCCTGGTTTTTGGTAAAGCAAACAGGCTAAAATTTTCTTATATTTGGAGTTCAAATAAGAAGAAGCCCGTGTAATTTTCAAGGTGTGATTTTTATAATGGGGAGACATTCTCGCCTTGTTTTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E356993" ref_strand="+" ref_description="SGN-E356993 [cTOS-22-C19]">
      <seq>agaaatggaagagagaaaactgatgggcttcaagtggatatttgtactgtcccttgcactgcttcaagctgcttactacaggcgtttgaggtggtctgttctcaagtcacgtaagctggtccttgatgttgtcaattagaacatcccctattcaaatgcttgtggagcaggcaaataatattatctttctcaaaatgtttttgttgtttggcgtcttactcttgaatggcctggtttttggtaaagcaaacaggctaaaattttcttatatttggagttcaaataagaagaggcccgtgtaattttcaagttgtgatttttatagtggggagacattctcgccttgtttttgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="23099" stop="22059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22799" g_stop="22778" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22777" i_stop="22691" i_length="87">
            <donor d_prob="0.380" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22690" g_stop="22359" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="354" r_length="332" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="355" polyA_stop="386"/>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E356993" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="0.917" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356993" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22799" e_stop="22778"/>
          <exon e_start="22690" e_stop="22359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATGGAAGAGAGAAAACTGGTCTGTTGTTTTTGGTATTTGCACAGATGATGATGTTTGTGTTATTACTATATGGTAGTTTGTGATGTATTTGCATTTCCACTGCAGATGGGCTTCAAGTGGATATTTGTACTGTCCCTTGCACTGCTTCAAGCTGCTTACTACAGGCGTTTGAGGTGGTCTGTTCTCAAGTCACGTAAGCTGGTCCTTGATGTTGTCAATTAGAACATCCCCTATTCAAATGCTTGTGGAGCAGGCAAATAATATTATCTTTCTCAAAATGTTTTTGTTGTTTGGCGTCTTACTCTTGAATGGCCTGGTTTTTGGTAAAGCAAACAGGCTAAAATTTTCTTATATTTGGAGTTCAAATAAGAAGAGGCCCGTGTAATTTTCAAGTTGTGATTTTTATAGTGGGGAGACATTCTCGCCTTGTTTTTGAA</genome_strand>
        <mrna_strand>AGAAATGGAAGAGAGAAAACTG.......................................................................................ATGGGCTTCAAGTGGATATTTGTACTGTCCCTTGCACTGCTTCAAGCTGCTTACTACAGGCGTTTGAGGTGGTCTGTTCTCAAGTCACGTAAGCTGGTCCTTGATGTTGTCAATTAGAACATCCCCTATTCAAATGCTTGTGGAGCAGGCAAATAATATTATCTTTCTCAAAATGTTTTTGTTGTTTGGCGTCTTACTCTTGAATGGCCTGGTTTTTGGTAAAGCAAACAGGCTAAAATTTTCTTATATTTGGAGTTCAAATAAGAAGAGGCCCGTGTAATTTTCAAGTTGTGATTTTTATAGTGGGGAGACATTCTCGCCTTGTTTTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E357052" ref_strand="+" ref_description="SGN-E357052 [cTOS-22-K20]">
      <seq>agaaatggaagagagaaaactgatgggcttcaagtggatatttgtactgtcccttgcactgcttcaagctgcttactacaggcgtttgaggtggtctgttctcaagtcacgtaagctggtccttgatgttgtcaattagaacatcccctattcaaatgcttgtggagcaggcaaataatattatctttctcaaaatgtttttgttgtttggcgtcttactcttgaatggcctggtttttggtaaagcaaacaggctaaaattttcttatatttggagttcaaataagaagaggcccgtgtaattttcaagttgtgatttttatagtggggagacattctcgccttgtttttgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="23099" stop="22059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22799" g_stop="22778" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22777" i_stop="22691" i_length="87">
            <donor d_prob="0.380" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22690" g_stop="22359" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="354" r_length="332" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="355" polyA_stop="387"/>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E357052" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="0.915" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357052" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22799" e_stop="22778"/>
          <exon e_start="22690" e_stop="22359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATGGAAGAGAGAAAACTGGTCTGTTGTTTTTGGTATTTGCACAGATGATGATGTTTGTGTTATTACTATATGGTAGTTTGTGATGTATTTGCATTTCCACTGCAGATGGGCTTCAAGTGGATATTTGTACTGTCCCTTGCACTGCTTCAAGCTGCTTACTACAGGCGTTTGAGGTGGTCTGTTCTCAAGTCACGTAAGCTGGTCCTTGATGTTGTCAATTAGAACATCCCCTATTCAAATGCTTGTGGAGCAGGCAAATAATATTATCTTTCTCAAAATGTTTTTGTTGTTTGGCGTCTTACTCTTGAATGGCCTGGTTTTTGGTAAAGCAAACAGGCTAAAATTTTCTTATATTTGGAGTTCAAATAAGAAGAGGCCCGTGTAATTTTCAAGTTGTGATTTTTATAGTGGGGAGACATTCTCGCCTTGTTTTTGAA</genome_strand>
        <mrna_strand>AGAAATGGAAGAGAGAAAACTG.......................................................................................ATGGGCTTCAAGTGGATATTTGTACTGTCCCTTGCACTGCTTCAAGCTGCTTACTACAGGCGTTTGAGGTGGTCTGTTCTCAAGTCACGTAAGCTGGTCCTTGATGTTGTCAATTAGAACATCCCCTATTCAAATGCTTGTGGAGCAGGCAAATAATATTATCTTTCTCAAAATGTTTTTGTTGTTTGGCGTCTTACTCTTGAATGGCCTGGTTTTTGGTAAAGCAAACAGGCTAAAATTTTCTTATATTTGGAGTTCAAATAAGAAGAGGCCCGTGTAATTTTCAAGTTGTGATTTTTATAGTGGGGAGACATTCTCGCCTTGTTTTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E339623" ref_strand="+" ref_description="SGN-E339623 [cTOE-16-H18]">
      <seq>acaatccttacttccctggtggagctattgcaatgccaaaaatgcttaatgatggtgctgttgagtatgaagatggtgtccctgcaacagaagctcagatggggaaagatgtggtgtcatttttaacttgggctgctgaaccagaaatggaagagagaaaactggtctgttgtttttggtatttgcacagatgatgatgtttgtgttattactatatggtagtttgtgatgtatttgcatttccactgcagatgggcttcaagtggatatttgtactgtcccttgcactgcttcaagctgcttactacaggcgtttgaggtggtctgttctcaagtcacgtaagctggtccttgatgttgtcaattagaacatcccctattcaaatgcttgtggagcatgcaaataatattatctttctcaaaatgtttttgttgtttggcgtcttactcttgaatggcctggtttttggtaaagcaaacaggctaaaattttcttatatttggagttcaaataaaaagaggcccgtgtaattttcaagttgtgatttttatagtggggagacattctcgccttggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="23354" stop="22065"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23054" g_stop="22957" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22956" i_stop="22844" i_length="113">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22843" g_stop="22364" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="578" r_length="480" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E339623" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339623" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23054" e_stop="22957"/>
          <exon e_start="22843" e_stop="22364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATCCTTACTTCCCTGGTGGAGCTATTGCAATGCCAAAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTGTCCCTGCAACAGAAGCTCAGGTTGGTCCCTTTGTCACTTGATTGGAGGGTGTCTGCATGTAGTTTCATAGAGATGATCTACACTACTATGTTTCAGTATAAATAAGCTAATTTTTCCTTGTATCGTTGTGTAGATGGGGAAAGATGTGGTGTCATTTTTAACTTGGGCTGCTGAACCAGAAATGGAAGAGAGAAAACTGGTCTGTTGTTTTTGGTATTTGCACAGATGATGATGTTTGTGTTATTACTATATGGTAGTTTGTGATGTATTTGCATTTCCACTGCAGATGGGCTTCAAGTGGATATTTGTACTGTCCCTTGCACTGCTTCAAGCTGCTTACTACAGGCGTTTGAGGTGGTCTGTTCTCAAGTCACGTAAGCTGGTCCTTGATGTTGTCAATTAGAACATCCCCTATTCAAATGCTTGTGGAGCAGGCAAATAATATTATCTTTCTCAAAATGTTTTTGTTGTTTGGCGTCTTACTCTTGAATGGCCTGGTTTTTGGTAAAGCAAACAGGCTAAAATTTTCTTATATTTGGAGTTCAAATAAGAAGAGGCCCGTGTAATTTTCAAGTTGTGATTTTTATAGTGGGGAGACATTCTCGCCTTGTTT</genome_strand>
        <mrna_strand>ACAATCCTTACTTCCCTGGTGGAGCTATTGCAATGCCAAAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTGTCCCTGCAACAGAAGCTCAG.................................................................................................................ATGGGGAAAGATGTGGTGTCATTTTTAACTTGGGCTGCTGAACCAGAAATGGAAGAGAGAAAACTGGTCTGTTGTTTTTGGTATTTGCACAGATGATGATGTTTGTGTTATTACTATATGGTAGTTTGTGATGTATTTGCATTTCCACTGCAGATGGGCTTCAAGTGGATATTTGTACTGTCCCTTGCACTGCTTCAAGCTGCTTACTACAGGCGTTTGAGGTGGTCTGTTCTCAAGTCACGTAAGCTGGTCCTTGATGTTGTCAATTAGAACATCCCCTATTCAAATGCTTGTGGAGCATGCAAATAATATTATCTTTCTCAAAATGTTTTTGTTGTTTGGCGTCTTACTCTTGAATGGCCTGGTTTTTGGTAAAGCAAACAGGCTAAAATTTTCTTATATTTGGAGTTCAAATAAAAAGAGGCCCGTGTAATTTTCAAGTTGTGATTTTTATAGTGGGGAGACATTCTCGCCTTGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E308825" ref_strand="+" ref_description="SGN-E308825 [cLEZ-14-J21]">
      <seq>gctcttcttactggctatcgtgatcctcctgctggtgtttcgattcgtgaaggactgcactacaatccttacttccctggtggagctattgcaatgccaaaaatgcttaatgatggtgctgttgagtatgaagatggtgtccctgcaacagaagctcagatggggaaagatgtggtgtcatttttaacttgggctgctgaaccagaaatggaagagagaaaactgatgggcttcaagtggatatttgtactgtcccttgcactgcttcaagctgcttactacaggcgtttgaggtggtctgttctcaagtcacgtaagctggtccttgatgttgtcaattagaacatcccctattcaaatgcttgtggagcaggcaaataatattatctttctcaaaatgtttttgttgtttggcgtcttactcttgaatggcctggtttttggtaaagcaaacaggctaaaattttcttatatttggagttcaaataagaagaggcccgtgtaattttcaagttgtgatttctatagtggggagacattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="24543" stop="22074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24243" g_stop="24202" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24201" i_stop="23074" i_length="1128">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.571" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23073" g_stop="22957" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="159" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22956" i_stop="22844" i_length="113">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22843" g_stop="22778" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="225" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22777" i_stop="22691" i_length="87">
            <donor d_prob="0.380" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22690" g_stop="22374" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="542" r_length="317" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E308825" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308825" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24243" e_stop="24202"/>
          <exon e_start="23073" e_stop="22957"/>
          <exon e_start="22843" e_stop="22778"/>
          <exon e_start="22690" e_stop="22374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTTCTTACTGGCTATCGTGATCCTCCTGCTGGTGTTTCGGTATGCATCTTTGTCCTTTGTGTATCTTAGACTCTTTAAGTTTTCAATCTTGAAGCCTTTATACCTTCTGCACTTTTGGTTTTTGGCTTCCCATATGATTTTTTTTCTTTTGATAACAAAGAAAATCCCTGAGTGGTAGAATGGGCCTTTTAGTAGAAATGTTTTTTTCCCTTTATTACATAGCTGGTTGTGTGGCCTGAGCAACTTTTTCAAGTGGAAGTAATTCTCATTCACGTTTCTCTCTAAACATTTGAATCCAAATGTTGTCTCTAATTTTTATTTTTTAAAAATTCTTTTTGTTATGTAACCTTGTGTTGTGGTAAAAAAAGGAAATTACTCCTAACATGTGCCACAAGAACATTGTGACACAGTGATTTCTTGTTTCCGACTGTAAACAAAGTAGGATAAGTCTCCAACCTTTATCTTGATGTATTTGACTCTGCAGCTGAGAGGACAGGAGGACAGGTTTCTGAACTGCTTTGACACTGATAGGCATCTTACTCTATGTAATCTTAAGCTGCAACTTGAATTTAAATCAACAATCCTACAGTACAAATTCATTAATTTAATCAAATCACTTCTGGAAATAGAGTAGTGAGAGGATCAGAGTATGTTGGATCACCTTTAGTTGCATAGGATCTCACATGAGAGTTTATGATCCTGTTTATTGGATTGTATTAGATAAAATTCAGACAGTAGATCTTAAGGTTTCACTCCGTCACACTGATCCTAGTATCCTACTAATTTGTCAGCTGTATGAAATTCCCATATTGTATTTTGTTATCTTGTATTGGCTGTGCAACAAATTCCAAGAGCAACAGGTGCAAATAAACCGTATAATATAATAATTAACCATGTATATTTGCTTGGATCTTGAAGTCCTACTATGATCCATCATGGGATCCTAAAATGATCCTATCTAGGATCTCCATTCTAGAAACATCTCATGGTGCATTTGTTGGTTTGCTTACTTAGCTTCCTGATTGTTGTGGTTGTTTGTGAGCATAATATAATCAAGTCAACCATTTTATTAGCTGAAGATAATTAGATTACTAGATTTTTTTGTCCACACAATACTGGCGTTCCTTGTCTCTTTCACTGATCTGTCAAGCTACAACCATACTATAGATTCGTGAAGGACTGCACTACAATCCTTACTTCCCTGGTGGAGCTATTGCAATGCCAAAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTGTCCCTGCAACAGAAGCTCAGGTTGGTCCCTTTGTCACTTGATTGGAGGGTGTCTGCATGTAGTTTCATAGAGATGATCTACACTACTATGTTTCAGTATAAATAAGCTAATTTTTCCTTGTATCGTTGTGTAGATGGGGAAAGATGTGGTGTCATTTTTAACTTGGGCTGCTGAACCAGAAATGGAAGAGAGAAAACTGGTCTGTTGTTTTTGGTATTTGCACAGATGATGATGTTTGTGTTATTACTATATGGTAGTTTGTGATGTATTTGCATTTCCACTGCAGATGGGCTTCAAGTGGATATTTGTACTGTCCCTTGCACTGCTTCAAGCTGCTTACTACAGGCGTTTGAGGTGGTCTGTTCTCAAGTCACGTAAGCTGGTCCTTGATGTTGTCAATTAGAACATCCCCTATTCAAATGCTTGTGGAGCAGGCAAATAATATTATCTTTCTCAAAATGTTTTTGTTGTTTGGCGTCTTACTCTTGAATGGCCTGGTTTTTGGTAAAGCAAACAGGCTAAAATTTTCTTATATTTGGAGTTCAAATAAGAAGAGGCCCGTGTAATTTTCAAGTTGTGATTTTTATAGTGGGGAGACATTCT</genome_strand>
        <mrna_strand>GCTCTTCTTACTGGCTATCGTGATCCTCCTGCTGGTGTTTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCGTGAAGGACTGCACTACAATCCTTACTTCCCTGGTGGAGCTATTGCAATGCCAAAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTGTCCCTGCAACAGAAGCTCAG.................................................................................................................ATGGGGAAAGATGTGGTGTCATTTTTAACTTGGGCTGCTGAACCAGAAATGGAAGAGAGAAAACTG.......................................................................................ATGGGCTTCAAGTGGATATTTGTACTGTCCCTTGCACTGCTTCAAGCTGCTTACTACAGGCGTTTGAGGTGGTCTGTTCTCAAGTCACGTAAGCTGGTCCTTGATGTTGTCAATTAGAACATCCCCTATTCAAATGCTTGTGGAGCAGGCAAATAATATTATCTTTCTCAAAATGTTTTTGTTGTTTGGCGTCTTACTCTTGAATGGCCTGGTTTTTGGTAAAGCAAACAGGCTAAAATTTTCTTATATTTGGAGTTCAAATAAGAAGAGGCCCGTGTAATTTTCAAGTTGTGATTTCTATAGTGGGGAGACATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E261532" ref_strand="+" ref_description="SGN-E261532 [cLEG-57-I4]">
      <seq>gcagctgagattgaggtggcggatgggcctaatgatgagggtgaaatgtttacccgtcctggtaaactgagtgatcgttttcctcagccatatccaaatgaagcagctgctagatttgctaatgggggagcctaccctccagatttaagtcttattacaaaagcacgccataatggtcaaaactatgtgtttgctcttcttactggctatcgtgatcctcctgctggtgtttcgattcgtgaaggactgcactacaatccttacttccctggtggagctattgcaatgccaaaaatgcttaatgatggtgctgttgagtatgaagatggtgtccctgcaacagaagctcagatggggaaagatgtggtgtcatttttaacttgggctgctgaaccagaaatggaagagagaaaactgatgggcttcaagtggatatttgtactgtcccttgcactgcttcaagctgcttactacaggcgtttgaggtggtctgttctcaagtcacgtaagctggtccttgatgttgtcaattagaacatcccctattcaaatgcttgtggagcaggcaaataatattatctttctcaaaatgtttttgttgtttggcgtcttactcttgaatggcctggtttttggtaaagcaaacaggctaaaattttcttatatttggagttcaaataag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="24843" stop="22126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24543" g_stop="24382" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24381" i_stop="24274" i_length="108">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24273" g_stop="24202" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="234" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24201" i_stop="23074" i_length="1128">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.571" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23073" g_stop="22957" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="351" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22956" i_stop="22844" i_length="113">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22843" g_stop="22778" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="417" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22777" i_stop="22691" i_length="87">
            <donor d_prob="0.380" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22690" g_stop="22426" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="682" r_length="265" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E261532" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261532" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24543" e_stop="24382"/>
          <exon e_start="24273" e_stop="24202"/>
          <exon e_start="23073" e_stop="22957"/>
          <exon e_start="22843" e_stop="22778"/>
          <exon e_start="22690" e_stop="22426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACCCGTCCTGGTAAACTGAGTGATCGTTTTCCTCAGCCATATCCAAATGAAGCAGCTGCTAGATTTGCTAATGGGGGAGCCTACCCTCCAGATTTAAGTCTTATTACAAAAGTATTTCCGCCATTCTGTTTCTGTTTTTTTTAAAGAAAAATCTCCTTTCTGTTCCTATTTCAGTCGTTACTGTTATCTGCCCCATTTAGCTTTCATTCTGTTTCTCAGGCACGCCATAATGGTCAAAACTATGTGTTTGCTCTTCTTACTGGCTATCGTGATCCTCCTGCTGGTGTTTCGGTATGCATCTTTGTCCTTTGTGTATCTTAGACTCTTTAAGTTTTCAATCTTGAAGCCTTTATACCTTCTGCACTTTTGGTTTTTGGCTTCCCATATGATTTTTTTTCTTTTGATAACAAAGAAAATCCCTGAGTGGTAGAATGGGCCTTTTAGTAGAAATGTTTTTTTCCCTTTATTACATAGCTGGTTGTGTGGCCTGAGCAACTTTTTCAAGTGGAAGTAATTCTCATTCACGTTTCTCTCTAAACATTTGAATCCAAATGTTGTCTCTAATTTTTATTTTTTAAAAATTCTTTTTGTTATGTAACCTTGTGTTGTGGTAAAAAAAGGAAATTACTCCTAACATGTGCCACAAGAACATTGTGACACAGTGATTTCTTGTTTCCGACTGTAAACAAAGTAGGATAAGTCTCCAACCTTTATCTTGATGTATTTGACTCTGCAGCTGAGAGGACAGGAGGACAGGTTTCTGAACTGCTTTGACACTGATAGGCATCTTACTCTATGTAATCTTAAGCTGCAACTTGAATTTAAATCAACAATCCTACAGTACAAATTCATTAATTTAATCAAATCACTTCTGGAAATAGAGTAGTGAGAGGATCAGAGTATGTTGGATCACCTTTAGTTGCATAGGATCTCACATGAGAGTTTATGATCCTGTTTATTGGATTGTATTAGATAAAATTCAGACAGTAGATCTTAAGGTTTCACTCCGTCACACTGATCCTAGTATCCTACTAATTTGTCAGCTGTATGAAATTCCCATATTGTATTTTGTTATCTTGTATTGGCTGTGCAACAAATTCCAAGAGCAACAGGTGCAAATAAACCGTATAATATAATAATTAACCATGTATATTTGCTTGGATCTTGAAGTCCTACTATGATCCATCATGGGATCCTAAAATGATCCTATCTAGGATCTCCATTCTAGAAACATCTCATGGTGCATTTGTTGGTTTGCTTACTTAGCTTCCTGATTGTTGTGGTTGTTTGTGAGCATAATATAATCAAGTCAACCATTTTATTAGCTGAAGATAATTAGATTACTAGATTTTTTTGTCCACACAATACTGGCGTTCCTTGTCTCTTTCACTGATCTGTCAAGCTACAACCATACTATAGATTCGTGAAGGACTGCACTACAATCCTTACTTCCCTGGTGGAGCTATTGCAATGCCAAAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTGTCCCTGCAACAGAAGCTCAGGTTGGTCCCTTTGTCACTTGATTGGAGGGTGTCTGCATGTAGTTTCATAGAGATGATCTACACTACTATGTTTCAGTATAAATAAGCTAATTTTTCCTTGTATCGTTGTGTAGATGGGGAAAGATGTGGTGTCATTTTTAACTTGGGCTGCTGAACCAGAAATGGAAGAGAGAAAACTGGTCTGTTGTTTTTGGTATTTGCACAGATGATGATGTTTGTGTTATTACTATATGGTAGTTTGTGATGTATTTGCATTTCCACTGCAGATGGGCTTCAAGTGGATATTTGTACTGTCCCTTGCACTGCTTCAAGCTGCTTACTACAGGCGTTTGAGGTGGTCTGTTCTCAAGTCACGTAAGCTGGTCCTTGATGTTGTCAATTAGAACATCCCCTATTCAAATGCTTGTGGAGCAGGCAAATAATATTATCTTTCTCAAAATGTTTTTGTTGTTTGGCGTCTTACTCTTGAATGGCCTGGTTTTTGGTAAAGCAAACAGGCTAAAATTTTCTTATATTTGGAGTTCAAATAAG</genome_strand>
        <mrna_strand>GCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACCCGTCCTGGTAAACTGAGTGATCGTTTTCCTCAGCCATATCCAAATGAAGCAGCTGCTAGATTTGCTAATGGGGGAGCCTACCCTCCAGATTTAAGTCTTATTACAAAA............................................................................................................GCACGCCATAATGGTCAAAACTATGTGTTTGCTCTTCTTACTGGCTATCGTGATCCTCCTGCTGGTGTTTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCGTGAAGGACTGCACTACAATCCTTACTTCCCTGGTGGAGCTATTGCAATGCCAAAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTGTCCCTGCAACAGAAGCTCAG.................................................................................................................ATGGGGAAAGATGTGGTGTCATTTTTAACTTGGGCTGCTGAACCAGAAATGGAAGAGAGAAAACTG.......................................................................................ATGGGCTTCAAGTGGATATTTGTACTGTCCCTTGCACTGCTTCAAGCTGCTTACTACAGGCGTTTGAGGTGGTCTGTTCTCAAGTCACGTAAGCTGGTCCTTGATGTTGTCAATTAGAACATCCCCTATTCAAATGCTTGTGGAGCAGGCAAATAATATTATCTTTCTCAAAATGTTTTTGTTGTTTGGCGTCTTACTCTTGAATGGCCTGGTTTTTGGTAAAGCAAACAGGCTAAAATTTTCTTATATTTGGAGTTCAAATAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E354414" ref_strand="+" ref_description="SGN-E354414 [cTOS-17-O12]">
      <seq>aaaagcacgccataatggtcaaaactatgtgtttgctcttcttactggctatcgtgatcctcctgctggtgtttcgattcgtgaaggactgcactacaatccttacttccctggtggagctattgcaatgccaaaaatgcttaatgatggtgctgttgagtatgaagatggtgtccctgcaacagaagctcagatggggaaagatgtggtgtcatttttaacttgggctgctgaaccagaaatggaagagagaaaactgatgggcttcaagtggatatttgtactgtcccttgcactgcttcaagctgcttactacaggcgtttgaggtggtctgttctcaagtcacgtaagctggtccttgatgttgtcaattagaacatcccctattcaaatgcttgtggagcaggcaaataatattatctttctcaaaatgtttttgttgtttggcgtcttactcttgaatggcctggtttttggtaaagcaaacaggctaaaattttcttatatttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="24575" stop="22137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24385" g_stop="24382" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24381" i_stop="24274" i_length="108">
            <donor d_prob="0.970" d_score="0.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24273" g_stop="24202" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="76" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24201" i_stop="23074" i_length="1128">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.571" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23073" g_stop="22957" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="193" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22956" i_stop="22844" i_length="113">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22843" g_stop="22778" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="259" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22777" i_stop="22691" i_length="87">
            <donor d_prob="0.380" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22690" g_stop="22437" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="513" r_length="254" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E354414" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24385" e_stop="24382"/>
          <exon e_start="24273" e_stop="24202"/>
          <exon e_start="23073" e_stop="22957"/>
          <exon e_start="22843" e_stop="22778"/>
          <exon e_start="22690" e_stop="22437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTATTTCCGCCATTCTGTTTCTGTTTTTTTTAAAGAAAAATCTCCTTTCTGTTCCTATTTCAGTCGTTACTGTTATCTGCCCCATTTAGCTTTCATTCTGTTTCTCAGGCACGCCATAATGGTCAAAACTATGTGTTTGCTCTTCTTACTGGCTATCGTGATCCTCCTGCTGGTGTTTCGGTATGCATCTTTGTCCTTTGTGTATCTTAGACTCTTTAAGTTTTCAATCTTGAAGCCTTTATACCTTCTGCACTTTTGGTTTTTGGCTTCCCATATGATTTTTTTTCTTTTGATAACAAAGAAAATCCCTGAGTGGTAGAATGGGCCTTTTAGTAGAAATGTTTTTTTCCCTTTATTACATAGCTGGTTGTGTGGCCTGAGCAACTTTTTCAAGTGGAAGTAATTCTCATTCACGTTTCTCTCTAAACATTTGAATCCAAATGTTGTCTCTAATTTTTATTTTTTAAAAATTCTTTTTGTTATGTAACCTTGTGTTGTGGTAAAAAAAGGAAATTACTCCTAACATGTGCCACAAGAACATTGTGACACAGTGATTTCTTGTTTCCGACTGTAAACAAAGTAGGATAAGTCTCCAACCTTTATCTTGATGTATTTGACTCTGCAGCTGAGAGGACAGGAGGACAGGTTTCTGAACTGCTTTGACACTGATAGGCATCTTACTCTATGTAATCTTAAGCTGCAACTTGAATTTAAATCAACAATCCTACAGTACAAATTCATTAATTTAATCAAATCACTTCTGGAAATAGAGTAGTGAGAGGATCAGAGTATGTTGGATCACCTTTAGTTGCATAGGATCTCACATGAGAGTTTATGATCCTGTTTATTGGATTGTATTAGATAAAATTCAGACAGTAGATCTTAAGGTTTCACTCCGTCACACTGATCCTAGTATCCTACTAATTTGTCAGCTGTATGAAATTCCCATATTGTATTTTGTTATCTTGTATTGGCTGTGCAACAAATTCCAAGAGCAACAGGTGCAAATAAACCGTATAATATAATAATTAACCATGTATATTTGCTTGGATCTTGAAGTCCTACTATGATCCATCATGGGATCCTAAAATGATCCTATCTAGGATCTCCATTCTAGAAACATCTCATGGTGCATTTGTTGGTTTGCTTACTTAGCTTCCTGATTGTTGTGGTTGTTTGTGAGCATAATATAATCAAGTCAACCATTTTATTAGCTGAAGATAATTAGATTACTAGATTTTTTTGTCCACACAATACTGGCGTTCCTTGTCTCTTTCACTGATCTGTCAAGCTACAACCATACTATAGATTCGTGAAGGACTGCACTACAATCCTTACTTCCCTGGTGGAGCTATTGCAATGCCAAAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTGTCCCTGCAACAGAAGCTCAGGTTGGTCCCTTTGTCACTTGATTGGAGGGTGTCTGCATGTAGTTTCATAGAGATGATCTACACTACTATGTTTCAGTATAAATAAGCTAATTTTTCCTTGTATCGTTGTGTAGATGGGGAAAGATGTGGTGTCATTTTTAACTTGGGCTGCTGAACCAGAAATGGAAGAGAGAAAACTGGTCTGTTGTTTTTGGTATTTGCACAGATGATGATGTTTGTGTTATTACTATATGGTAGTTTGTGATGTATTTGCATTTCCACTGCAGATGGGCTTCAAGTGGATATTTGTACTGTCCCTTGCACTGCTTCAAGCTGCTTACTACAGGCGTTTGAGGTGGTCTGTTCTCAAGTCACGTAAGCTGGTCCTTGATGTTGTCAATTAGAACATCCCCTATTCAAATGCTTGTGGAGCAGGCAAATAATATTATCTTTCTCAAAATGTTTTTGTTGTTTGGCGTCTTACTCTTGAATGGCCTGGTTTTTGGTAAAGCAAACAGGCTAAAATTTTCTTATATTTGGA</genome_strand>
        <mrna_strand>AAAA............................................................................................................GCACGCCATAATGGTCAAAACTATGTGTTTGCTCTTCTTACTGGCTATCGTGATCCTCCTGCTGGTGTTTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCGTGAAGGACTGCACTACAATCCTTACTTCCCTGGTGGAGCTATTGCAATGCCAAAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTGTCCCTGCAACAGAAGCTCAG.................................................................................................................ATGGGGAAAGATGTGGTGTCATTTTTAACTTGGGCTGCTGAACCAGAAATGGAAGAGAGAAAACTG.......................................................................................ATGGGCTTCAAGTGGATATTTGTACTGTCCCTTGCACTGCTTCAAGCTGCTTACTACAGGCGTTTGAGGTGGTCTGTTCTCAAGTCACGTAAGCTGGTCCTTGATGTTGTCAATTAGAACATCCCCTATTCAAATGCTTGTGGAGCAGGCAAATAATATTATCTTTCTCAAAATGTTTTTGTTGTTTGGCGTCTTACTCTTGAATGGCCTGGTTTTTGGTAAAGCAAACAGGCTAAAATTTTCTTATATTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E327960" ref_strand="+" ref_description="SGN-E327960 [cTOC-22-D22]">
      <seq>ttcttagttcatacgatcatgcttcgattcgtcgtggtcaccaggtttatcaacaagtatgtgcatcttgtcattcaatgtcacttgtttcatatcgtgacttggtcggggtggcatatacagaggaagaagtaaaggctatggcagctgagattgaggtggcggatgggcctaatgatgagggtgaaatgtttacccgtcctggtaaactgagtgatcgttttcctcagccatatccaaatgaagcagctgctagatttgctaatgggggagcctaccctccagatttaagtcttattacaaaagcacgccataatggtcaaaactatgtgtttgctcttcttactggctatcgtgatcctcctgctggtgtttcgattcgtgaaggactgcactacaatccttacttccctggtggagctattgcaatgccaaaaatgcttaatgatggtgctgttgagtatgaagatggtgtccctgcaacagaagctcagatggggaaagatgtggtgtcatttttaacttgggctgctgaaccagaaatggaagagagaaaactgatgggcttcaagtggatatttgtactgtcccttgcactgcttcaagctgcttactacaggcgtttgaggtggtctgttctcaagtcacgtaagctggtccttgatgttgtcaattagaacatcccctattcaaatgcttgtggagcaggcaaataatattatctttctcaaaatgttttgttgtttggcgtcttactctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="26018" stop="22190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25718" g_stop="25694" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25693" i_stop="24662" i_length="1032">
            <donor d_prob="0.887" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24661" g_stop="24382" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="305" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24381" i_stop="24274" i_length="108">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24273" g_stop="24202" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="377" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24201" i_stop="23074" i_length="1128">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.571" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23073" g_stop="22957" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="494" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22956" i_stop="22844" i_length="113">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22843" g_stop="22778" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="560" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22777" i_stop="22691" i_length="87">
            <donor d_prob="0.380" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="22690" g_stop="22490" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="760" r_length="200" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E327960" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25718" e_stop="25694"/>
          <exon e_start="24661" e_stop="24382"/>
          <exon e_start="24273" e_stop="24202"/>
          <exon e_start="23073" e_stop="22957"/>
          <exon e_start="22843" e_stop="22778"/>
          <exon e_start="22690" e_stop="22490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTAGTTCATACGATCATGCTTCGTGAGTTTCTCGTGAATCTCTTATCCCCCCTCCCCCTTGCTCTCTGTTTTCTTTTTCGTTCAGTACTTTCAGTTGCCCTGCCCCCCCCCCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGACTTTTACGTGTATTTCTGATAAATAAAGCTCTCTGTTGTCTTTTTTGTTCTCTGCTTTCAGTTGCCCGTCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGGCTTTTACGTGTATTTCTGATAAAGAATGTTCTGTTAAGTGTAAACTTCCATCCCTTTAAAGAAAAGGATAAGGATTTCAGGGTATCTGCAGATTTTGTGATAGAGGGTTTTGCCAGGTGCATTTCAACAATAATATGGGTCAATCACTTAAAGTACACTACATTCAATATGCATTTTTATGGCATAGCATGGAAAGACCTTTCTAAATGAATTGTTGTTCCATTCTCATGTTTGGCCTGAAAAATGGAAGCTTCTTCTATGATATGGAAAAAATGCCAAGCACCGACTATTGAAATTGCTGCTCATTTGGTTTACAATTGTATTTCTTGTCTCTTTAATTTCAAAATGCCCAATATATAGTACATCCAGACTTTTTGCATATTTAACCAGCTTATGTAGAAAAGATTCCATATTCTACGCCAATAGATACATGACATCCATTAAGTTATCATTCTCAAAAAAAAAAGATTCATGACATCCATGTACTGAATCGTCAAAAGAGCCATGCTAAGAAAGCCAAGCTTATACTTGTTGGCCCATGCCGATCAGAGAAAACACTCCTATACTGTGTCTAGTGGGGAGCTTTTTCATCTCAAAGAATAAGCAGATCTTCATATTTTGCATTTTACATTACCTTGTAGAAAGAAGAAAAAAGATATTGTGCATTGCTTAAATTTATACTGCCAGGATAAAAAGGAAGTGATCAAGACCTGCTTACAGAATTCAACTAGCTATATAGTTGTATTTTAGTTGAATTATTTGTGCTGCTCTTTGGCAAACAGGATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACCCGTCCTGGTAAACTGAGTGATCGTTTTCCTCAGCCATATCCAAATGAAGCAGCTGCTAGATTTGCTAATGGGGGAGCCTACCCTCCAGATTTAAGTCTTATTACAAAAGTATTTCCGCCATTCTGTTTCTGTTTTTTTTAAAGAAAAATCTCCTTTCTGTTCCTATTTCAGTCGTTACTGTTATCTGCCCCATTTAGCTTTCATTCTGTTTCTCAGGCACGCCATAATGGTCAAAACTATGTGTTTGCTCTTCTTACTGGCTATCGTGATCCTCCTGCTGGTGTTTCGGTATGCATCTTTGTCCTTTGTGTATCTTAGACTCTTTAAGTTTTCAATCTTGAAGCCTTTATACCTTCTGCACTTTTGGTTTTTGGCTTCCCATATGATTTTTTTTCTTTTGATAACAAAGAAAATCCCTGAGTGGTAGAATGGGCCTTTTAGTAGAAATGTTTTTTTCCCTTTATTACATAGCTGGTTGTGTGGCCTGAGCAACTTTTTCAAGTGGAAGTAATTCTCATTCACGTTTCTCTCTAAACATTTGAATCCAAATGTTGTCTCTAATTTTTATTTTTTAAAAATTCTTTTTGTTATGTAACCTTGTGTTGTGGTAAAAAAAGGAAATTACTCCTAACATGTGCCACAAGAACATTGTGACACAGTGATTTCTTGTTTCCGACTGTAAACAAAGTAGGATAAGTCTCCAACCTTTATCTTGATGTATTTGACTCTGCAGCTGAGAGGACAGGAGGACAGGTTTCTGAACTGCTTTGACACTGATAGGCATCTTACTCTATGTAATCTTAAGCTGCAACTTGAATTTAAATCAACAATCCTACAGTACAAATTCATTAATTTAATCAAATCACTTCTGGAAATAGAGTAGTGAGAGGATCAGAGTATGTTGGATCACCTTTAGTTGCATAGGATCTCACATGAGAGTTTATGATCCTGTTTATTGGATTGTATTAGATAAAATTCAGACAGTAGATCTTAAGGTTTCACTCCGTCACACTGATCCTAGTATCCTACTAATTTGTCAGCTGTATGAAATTCCCATATTGTATTTTGTTATCTTGTATTGGCTGTGCAACAAATTCCAAGAGCAACAGGTGCAAATAAACCGTATAATATAATAATTAACCATGTATATTTGCTTGGATCTTGAAGTCCTACTATGATCCATCATGGGATCCTAAAATGATCCTATCTAGGATCTCCATTCTAGAAACATCTCATGGTGCATTTGTTGGTTTGCTTACTTAGCTTCCTGATTGTTGTGGTTGTTTGTGAGCATAATATAATCAAGTCAACCATTTTATTAGCTGAAGATAATTAGATTACTAGATTTTTTTGTCCACACAATACTGGCGTTCCTTGTCTCTTTCACTGATCTGTCAAGCTACAACCATACTATAGATTCGTGAAGGACTGCACTACAATCCTTACTTCCCTGGTGGAGCTATTGCAATGCCAAAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTGTCCCTGCAACAGAAGCTCAGGTTGGTCCCTTTGTCACTTGATTGGAGGGTGTCTGCATGTAGTTTCATAGAGATGATCTACACTACTATGTTTCAGTATAAATAAGCTAATTTTTCCTTGTATCGTTGTGTAGATGGGGAAAGATGTGGTGTCATTTTTAACTTGGGCTGCTGAACCAGAAATGGAAGAGAGAAAACTGGTCTGTTGTTTTTGGTATTTGCACAGATGATGATGTTTGTGTTATTACTATATGGTAGTTTGTGATGTATTTGCATTTCCACTGCAGATGGGCTTCAAGTGGATATTTGTACTGTCCCTTGCACTGCTTCAAGCTGCTTACTACAGGCGTTTGAGGTGGTCTGTTCTCAAGTCACGTAAGCTGGTCCTTGATGTTGTCAATTAGAACATCCCCTATTCAAATGCTTGTGGAGCAGGCAAATAATATTATCTTTCTCAAAATGTTTTTGTTGTTTGGCGTCTTACTCTT</genome_strand>
        <mrna_strand>TTCTTAGTTCATACGATCATGCTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACCCGTCCTGGTAAACTGAGTGATCGTTTTCCTCAGCCATATCCAAATGAAGCAGCTGCTAGATTTGCTAATGGGGGAGCCTACCCTCCAGATTTAAGTCTTATTACAAAA............................................................................................................GCACGCCATAATGGTCAAAACTATGTGTTTGCTCTTCTTACTGGCTATCGTGATCCTCCTGCTGGTGTTTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCGTGAAGGACTGCACTACAATCCTTACTTCCCTGGTGGAGCTATTGCAATGCCAAAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTGTCCCTGCAACAGAAGCTCAG.................................................................................................................ATGGGGAAAGATGTGGTGTCATTTTTAACTTGGGCTGCTGAACCAGAAATGGAAGAGAGAAAACTG.......................................................................................ATGGGCTTCAAGTGGATATTTGTACTGTCCCTTGCACTGCTTCAAGCTGCTTACTACAGGCGTTTGAGGTGGTCTGTTCTCAAGTCACGTAAGCTGGTCCTTGATGTTGTCAATTAGAACATCCCCTATTCAAATGCTTGTGGAGCAGGCAAATAATATTATCTTTCTCAAAATG-TTTTGTTGTTTGGCGTCTTACTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E311413" ref_strand="+" ref_description="SGN-E311413 [cLEZ-18-A13]">
      <seq>gctagatttgctaatgggggagcctaccctccagatttaagtcttattacaaaagcacgccataatggtcaaaactatgtgtttgctcttcttactggctatcgtgatcctcctgctggtgtttcgattcgtgaaggactgcactacaatccttacttccctggtggagctattgcaatgccaaaaatgcttaatgatggtgctgttgagtatgaagatggtgtccctgcaacagaagctcagatggggaaagatgtggtgtcatttttaacttgggctgctgaaccagaaatggaagagagaaaactgatgggcttcaagtggatatttgtactgtcccttgcactgcttcaagctgcttactacaggcgtttgaggtggtctgttctcaagtcacgtaagctggtccttgatgttgtcaattagaacatcccctattcaaatgcttgtggagcaggcaaataatattatctttctcaaaatgttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="24735" stop="22211"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24435" g_stop="24382" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24381" i_stop="24274" i_length="108">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24273" g_stop="24202" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="126" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24201" i_stop="23074" i_length="1128">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.571" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23073" g_stop="22957" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="243" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22956" i_stop="22844" i_length="113">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22843" g_stop="22778" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="309" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22777" i_stop="22691" i_length="87">
            <donor d_prob="0.380" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22690" g_stop="22511" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="489" r_length="180" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E311413" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311413" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24435" e_stop="24382"/>
          <exon e_start="24273" e_stop="24202"/>
          <exon e_start="23073" e_stop="22957"/>
          <exon e_start="22843" e_stop="22778"/>
          <exon e_start="22690" e_stop="22511"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAGATTTGCTAATGGGGGAGCCTACCCTCCAGATTTAAGTCTTATTACAAAAGTATTTCCGCCATTCTGTTTCTGTTTTTTTTAAAGAAAAATCTCCTTTCTGTTCCTATTTCAGTCGTTACTGTTATCTGCCCCATTTAGCTTTCATTCTGTTTCTCAGGCACGCCATAATGGTCAAAACTATGTGTTTGCTCTTCTTACTGGCTATCGTGATCCTCCTGCTGGTGTTTCGGTATGCATCTTTGTCCTTTGTGTATCTTAGACTCTTTAAGTTTTCAATCTTGAAGCCTTTATACCTTCTGCACTTTTGGTTTTTGGCTTCCCATATGATTTTTTTTCTTTTGATAACAAAGAAAATCCCTGAGTGGTAGAATGGGCCTTTTAGTAGAAATGTTTTTTTCCCTTTATTACATAGCTGGTTGTGTGGCCTGAGCAACTTTTTCAAGTGGAAGTAATTCTCATTCACGTTTCTCTCTAAACATTTGAATCCAAATGTTGTCTCTAATTTTTATTTTTTAAAAATTCTTTTTGTTATGTAACCTTGTGTTGTGGTAAAAAAAGGAAATTACTCCTAACATGTGCCACAAGAACATTGTGACACAGTGATTTCTTGTTTCCGACTGTAAACAAAGTAGGATAAGTCTCCAACCTTTATCTTGATGTATTTGACTCTGCAGCTGAGAGGACAGGAGGACAGGTTTCTGAACTGCTTTGACACTGATAGGCATCTTACTCTATGTAATCTTAAGCTGCAACTTGAATTTAAATCAACAATCCTACAGTACAAATTCATTAATTTAATCAAATCACTTCTGGAAATAGAGTAGTGAGAGGATCAGAGTATGTTGGATCACCTTTAGTTGCATAGGATCTCACATGAGAGTTTATGATCCTGTTTATTGGATTGTATTAGATAAAATTCAGACAGTAGATCTTAAGGTTTCACTCCGTCACACTGATCCTAGTATCCTACTAATTTGTCAGCTGTATGAAATTCCCATATTGTATTTTGTTATCTTGTATTGGCTGTGCAACAAATTCCAAGAGCAACAGGTGCAAATAAACCGTATAATATAATAATTAACCATGTATATTTGCTTGGATCTTGAAGTCCTACTATGATCCATCATGGGATCCTAAAATGATCCTATCTAGGATCTCCATTCTAGAAACATCTCATGGTGCATTTGTTGGTTTGCTTACTTAGCTTCCTGATTGTTGTGGTTGTTTGTGAGCATAATATAATCAAGTCAACCATTTTATTAGCTGAAGATAATTAGATTACTAGATTTTTTTGTCCACACAATACTGGCGTTCCTTGTCTCTTTCACTGATCTGTCAAGCTACAACCATACTATAGATTCGTGAAGGACTGCACTACAATCCTTACTTCCCTGGTGGAGCTATTGCAATGCCAAAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTGTCCCTGCAACAGAAGCTCAGGTTGGTCCCTTTGTCACTTGATTGGAGGGTGTCTGCATGTAGTTTCATAGAGATGATCTACACTACTATGTTTCAGTATAAATAAGCTAATTTTTCCTTGTATCGTTGTGTAGATGGGGAAAGATGTGGTGTCATTTTTAACTTGGGCTGCTGAACCAGAAATGGAAGAGAGAAAACTGGTCTGTTGTTTTTGGTATTTGCACAGATGATGATGTTTGTGTTATTACTATATGGTAGTTTGTGATGTATTTGCATTTCCACTGCAGATGGGCTTCAAGTGGATATTTGTACTGTCCCTTGCACTGCTTCAAGCTGCTTACTACAGGCGTTTGAGGTGGTCTGTTCTCAAGTCACGTAAGCTGGTCCTTGATGTTGTCAATTAGAACATCCCCTATTCAAATGCTTGTGGAGCAGGCAAATAATATTATCTTTCTCAAAATGTTTTT</genome_strand>
        <mrna_strand>GCTAGATTTGCTAATGGGGGAGCCTACCCTCCAGATTTAAGTCTTATTACAAAA............................................................................................................GCACGCCATAATGGTCAAAACTATGTGTTTGCTCTTCTTACTGGCTATCGTGATCCTCCTGCTGGTGTTTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCGTGAAGGACTGCACTACAATCCTTACTTCCCTGGTGGAGCTATTGCAATGCCAAAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTGTCCCTGCAACAGAAGCTCAG.................................................................................................................ATGGGGAAAGATGTGGTGTCATTTTTAACTTGGGCTGCTGAACCAGAAATGGAAGAGAGAAAACTG.......................................................................................ATGGGCTTCAAGTGGATATTTGTACTGTCCCTTGCACTGCTTCAAGCTGCTTACTACAGGCGTTTGAGGTGGTCTGTTCTCAAGTCACGTAAGCTGGTCCTTGATGTTGTCAATTAGAACATCCCCTATTCAAATGCTTGTGGAGCAGGCAAATAATATTATCTTTCTCAAAATGTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E270944" ref_strand="+" ref_description="SGN-E270944 [cLEM-6-N18]">
      <seq>acccgtcctggtaaactgagtgatcgttttcctcagccatatgcaaatgaagcagctgctagatttgctaatgggggagcctaccctccagatttaagtcttattacaaaagcacgccataatggtcaaaactatgtgtttgctcttcttactggctatcgtgatcctcctgctggtgtttcgattcgtgaaggactgcactacaatccttacttccctggtggagctattgcaatgccaaaaatgcttaatgatggtgctgttgagtatgaagatggtgtccctgcaacagaagctcagatggggaaagatgtggtgtcatttttaacttgggctgctgaaccagaaatggaagagagaaaactgatgggcttcaagtggatatttgtactgtcccttgcactgcttcaagctgcttactacaggcgtttgaggtggtctgttctcaagtcacgtaagctggtccttgatgttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="24792" stop="22281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24492" g_stop="24382" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24381" i_stop="24274" i_length="108">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24273" g_stop="24202" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="183" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24201" i_stop="23074" i_length="1128">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.571" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23073" g_stop="22957" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="300" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22956" i_stop="22844" i_length="113">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22843" g_stop="22778" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="366" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22777" i_stop="22691" i_length="87">
            <donor d_prob="0.380" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22690" g_stop="22581" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="476" r_length="110" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E270944" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24492" e_stop="24382"/>
          <exon e_start="24273" e_stop="24202"/>
          <exon e_start="23073" e_stop="22957"/>
          <exon e_start="22843" e_stop="22778"/>
          <exon e_start="22690" e_stop="22581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCGTCCTGGTAAACTGAGTGATCGTTTTCCTCAGCCATATCCAAATGAAGCAGCTGCTAGATTTGCTAATGGGGGAGCCTACCCTCCAGATTTAAGTCTTATTACAAAAGTATTTCCGCCATTCTGTTTCTGTTTTTTTTAAAGAAAAATCTCCTTTCTGTTCCTATTTCAGTCGTTACTGTTATCTGCCCCATTTAGCTTTCATTCTGTTTCTCAGGCACGCCATAATGGTCAAAACTATGTGTTTGCTCTTCTTACTGGCTATCGTGATCCTCCTGCTGGTGTTTCGGTATGCATCTTTGTCCTTTGTGTATCTTAGACTCTTTAAGTTTTCAATCTTGAAGCCTTTATACCTTCTGCACTTTTGGTTTTTGGCTTCCCATATGATTTTTTTTCTTTTGATAACAAAGAAAATCCCTGAGTGGTAGAATGGGCCTTTTAGTAGAAATGTTTTTTTCCCTTTATTACATAGCTGGTTGTGTGGCCTGAGCAACTTTTTCAAGTGGAAGTAATTCTCATTCACGTTTCTCTCTAAACATTTGAATCCAAATGTTGTCTCTAATTTTTATTTTTTAAAAATTCTTTTTGTTATGTAACCTTGTGTTGTGGTAAAAAAAGGAAATTACTCCTAACATGTGCCACAAGAACATTGTGACACAGTGATTTCTTGTTTCCGACTGTAAACAAAGTAGGATAAGTCTCCAACCTTTATCTTGATGTATTTGACTCTGCAGCTGAGAGGACAGGAGGACAGGTTTCTGAACTGCTTTGACACTGATAGGCATCTTACTCTATGTAATCTTAAGCTGCAACTTGAATTTAAATCAACAATCCTACAGTACAAATTCATTAATTTAATCAAATCACTTCTGGAAATAGAGTAGTGAGAGGATCAGAGTATGTTGGATCACCTTTAGTTGCATAGGATCTCACATGAGAGTTTATGATCCTGTTTATTGGATTGTATTAGATAAAATTCAGACAGTAGATCTTAAGGTTTCACTCCGTCACACTGATCCTAGTATCCTACTAATTTGTCAGCTGTATGAAATTCCCATATTGTATTTTGTTATCTTGTATTGGCTGTGCAACAAATTCCAAGAGCAACAGGTGCAAATAAACCGTATAATATAATAATTAACCATGTATATTTGCTTGGATCTTGAAGTCCTACTATGATCCATCATGGGATCCTAAAATGATCCTATCTAGGATCTCCATTCTAGAAACATCTCATGGTGCATTTGTTGGTTTGCTTACTTAGCTTCCTGATTGTTGTGGTTGTTTGTGAGCATAATATAATCAAGTCAACCATTTTATTAGCTGAAGATAATTAGATTACTAGATTTTTTTGTCCACACAATACTGGCGTTCCTTGTCTCTTTCACTGATCTGTCAAGCTACAACCATACTATAGATTCGTGAAGGACTGCACTACAATCCTTACTTCCCTGGTGGAGCTATTGCAATGCCAAAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTGTCCCTGCAACAGAAGCTCAGGTTGGTCCCTTTGTCACTTGATTGGAGGGTGTCTGCATGTAGTTTCATAGAGATGATCTACACTACTATGTTTCAGTATAAATAAGCTAATTTTTCCTTGTATCGTTGTGTAGATGGGGAAAGATGTGGTGTCATTTTTAACTTGGGCTGCTGAACCAGAAATGGAAGAGAGAAAACTGGTCTGTTGTTTTTGGTATTTGCACAGATGATGATGTTTGTGTTATTACTATATGGTAGTTTGTGATGTATTTGCATTTCCACTGCAGATGGGCTTCAAGTGGATATTTGTACTGTCCCTTGCACTGCTTCAAGCTGCTTACTACAGGCGTTTGAGGTGGTCTGTTCTCAAGTCACGTAAGCTGGTCCTTGATGTTGT</genome_strand>
        <mrna_strand>ACCCGTCCTGGTAAACTGAGTGATCGTTTTCCTCAGCCATATGCAAATGAAGCAGCTGCTAGATTTGCTAATGGGGGAGCCTACCCTCCAGATTTAAGTCTTATTACAAAA............................................................................................................GCACGCCATAATGGTCAAAACTATGTGTTTGCTCTTCTTACTGGCTATCGTGATCCTCCTGCTGGTGTTTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCGTGAAGGACTGCACTACAATCCTTACTTCCCTGGTGGAGCTATTGCAATGCCAAAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTGTCCCTGCAACAGAAGCTCAG.................................................................................................................ATGGGGAAAGATGTGGTGTCATTTTTAACTTGGGCTGCTGAACCAGAAATGGAAGAGAGAAAACTG.......................................................................................ATGGGCTTCAAGTGGATATTTGTACTGTCCCTTGCACTGCTTCAAGCTGCTTACTACAGGCGTTTGAGGTGGTCTGTTCTCAAGTCACGTAAGCTGGTCCTTGATGTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E258559" ref_strand="+" ref_description="SGN-E258559 [cLEG-47-L13]">
      <seq>gcagctgagattgaggtggcggatgggcctaatgatgagggtgaaatgtttacccgtcctggtaaactgagtgatcgttttcctcagccatatccaaatgaagcagctgctagatttgctaatgggggagcctaccctccagatttaagtcttattacaaaagcacgccataatggtcaaaactatgtgtttgctcttcttactggctatcgtgatcctcctgctggtgtttcgattcgtgaaggactgcactacaatccttacttccctggtggagctattgcaatgccaaaaatgcttaatgatggtgctgttgagtatgaagatggtgtccctgcaacagaagctcagatggggaaagatgtggtgtcatttttaacttgggctgctgaaccagaaatggaagagagaaaactgatgggcttcaagtggatatttgtactgtcccttgcactgcttcaagctgcttactacaggcgtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="24843" stop="22325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24543" g_stop="24382" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24381" i_stop="24274" i_length="108">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24273" g_stop="24202" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="234" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24201" i_stop="23074" i_length="1128">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.571" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23073" g_stop="22957" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="351" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22956" i_stop="22844" i_length="113">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22843" g_stop="22778" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="417" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22777" i_stop="22691" i_length="87">
            <donor d_prob="0.380" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22690" g_stop="22625" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="483" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E258559" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24543" e_stop="24382"/>
          <exon e_start="24273" e_stop="24202"/>
          <exon e_start="23073" e_stop="22957"/>
          <exon e_start="22843" e_stop="22778"/>
          <exon e_start="22690" e_stop="22625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACCCGTCCTGGTAAACTGAGTGATCGTTTTCCTCAGCCATATCCAAATGAAGCAGCTGCTAGATTTGCTAATGGGGGAGCCTACCCTCCAGATTTAAGTCTTATTACAAAAGTATTTCCGCCATTCTGTTTCTGTTTTTTTTAAAGAAAAATCTCCTTTCTGTTCCTATTTCAGTCGTTACTGTTATCTGCCCCATTTAGCTTTCATTCTGTTTCTCAGGCACGCCATAATGGTCAAAACTATGTGTTTGCTCTTCTTACTGGCTATCGTGATCCTCCTGCTGGTGTTTCGGTATGCATCTTTGTCCTTTGTGTATCTTAGACTCTTTAAGTTTTCAATCTTGAAGCCTTTATACCTTCTGCACTTTTGGTTTTTGGCTTCCCATATGATTTTTTTTCTTTTGATAACAAAGAAAATCCCTGAGTGGTAGAATGGGCCTTTTAGTAGAAATGTTTTTTTCCCTTTATTACATAGCTGGTTGTGTGGCCTGAGCAACTTTTTCAAGTGGAAGTAATTCTCATTCACGTTTCTCTCTAAACATTTGAATCCAAATGTTGTCTCTAATTTTTATTTTTTAAAAATTCTTTTTGTTATGTAACCTTGTGTTGTGGTAAAAAAAGGAAATTACTCCTAACATGTGCCACAAGAACATTGTGACACAGTGATTTCTTGTTTCCGACTGTAAACAAAGTAGGATAAGTCTCCAACCTTTATCTTGATGTATTTGACTCTGCAGCTGAGAGGACAGGAGGACAGGTTTCTGAACTGCTTTGACACTGATAGGCATCTTACTCTATGTAATCTTAAGCTGCAACTTGAATTTAAATCAACAATCCTACAGTACAAATTCATTAATTTAATCAAATCACTTCTGGAAATAGAGTAGTGAGAGGATCAGAGTATGTTGGATCACCTTTAGTTGCATAGGATCTCACATGAGAGTTTATGATCCTGTTTATTGGATTGTATTAGATAAAATTCAGACAGTAGATCTTAAGGTTTCACTCCGTCACACTGATCCTAGTATCCTACTAATTTGTCAGCTGTATGAAATTCCCATATTGTATTTTGTTATCTTGTATTGGCTGTGCAACAAATTCCAAGAGCAACAGGTGCAAATAAACCGTATAATATAATAATTAACCATGTATATTTGCTTGGATCTTGAAGTCCTACTATGATCCATCATGGGATCCTAAAATGATCCTATCTAGGATCTCCATTCTAGAAACATCTCATGGTGCATTTGTTGGTTTGCTTACTTAGCTTCCTGATTGTTGTGGTTGTTTGTGAGCATAATATAATCAAGTCAACCATTTTATTAGCTGAAGATAATTAGATTACTAGATTTTTTTGTCCACACAATACTGGCGTTCCTTGTCTCTTTCACTGATCTGTCAAGCTACAACCATACTATAGATTCGTGAAGGACTGCACTACAATCCTTACTTCCCTGGTGGAGCTATTGCAATGCCAAAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTGTCCCTGCAACAGAAGCTCAGGTTGGTCCCTTTGTCACTTGATTGGAGGGTGTCTGCATGTAGTTTCATAGAGATGATCTACACTACTATGTTTCAGTATAAATAAGCTAATTTTTCCTTGTATCGTTGTGTAGATGGGGAAAGATGTGGTGTCATTTTTAACTTGGGCTGCTGAACCAGAAATGGAAGAGAGAAAACTGGTCTGTTGTTTTTGGTATTTGCACAGATGATGATGTTTGTGTTATTACTATATGGTAGTTTGTGATGTATTTGCATTTCCACTGCAGATGGGCTTCAAGTGGATATTTGTACTGTCCCTTGCACTGCTTCAAGCTGCTTACTACAGGCGTTTG</genome_strand>
        <mrna_strand>GCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACCCGTCCTGGTAAACTGAGTGATCGTTTTCCTCAGCCATATCCAAATGAAGCAGCTGCTAGATTTGCTAATGGGGGAGCCTACCCTCCAGATTTAAGTCTTATTACAAAA............................................................................................................GCACGCCATAATGGTCAAAACTATGTGTTTGCTCTTCTTACTGGCTATCGTGATCCTCCTGCTGGTGTTTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCGTGAAGGACTGCACTACAATCCTTACTTCCCTGGTGGAGCTATTGCAATGCCAAAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTGTCCCTGCAACAGAAGCTCAG.................................................................................................................ATGGGGAAAGATGTGGTGTCATTTTTAACTTGGGCTGCTGAACCAGAAATGGAAGAGAGAAAACTG.......................................................................................ATGGGCTTCAAGTGGATATTTGTACTGTCCCTTGCACTGCTTCAAGCTGCTTACTACAGGCGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E260712" ref_strand="+" ref_description="SGN-E260712 [cLEG-54-P17]">
      <seq>ttccaaaaaagctcaagaagaatttggttcttttggcatgaagtccttcagaacattagcactcattggagcgggtgtatctggacttctaggttttgcgacagtagcatctgctgatgaggctgaacacggattggaatgcccaagctatccttggcctcatgcaggcattcttagttcatacgatcatgcttcgattcgtcgtggtcaccaggtttatcaacaagtatgtgcatcttgtcattcaatgtcacttgtttcatatcgtgacttggtcggggtggcatatacagaggaagaagtaaaggctatggcagctgagattgaggtggcggatgggcctaatgatgagggtgaaatgtttacccgtcctggtaaactgagtgatcgttttcctcagccatatccaaatgaagcagctgctagatttgctaatgggggagcctaccctccagatttaagtcttattacaaaagcacgccataatggtcaaaactatgtgtttgctcttcttactggctatcgtgatcctcctgctggtgtttcgattcgtgaaggactgcactacaatccttacttccctggtggagctattgcaatgccaaaaatgcttaatgatggtgctgttgagtatgaagatggtgtccctgcaacagaagctcagatggggaaagatgtggtgtcatttttaacttgggctgctgaaccagaaatggaagagagaaaactgatgggcttcaagtggatatttgtactgtcccttgcactgcttcaagctgcttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="26188" stop="22336"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25888" g_stop="25694" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25693" i_stop="24662" i_length="1032">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24661" g_stop="24382" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="475" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24381" i_stop="24274" i_length="108">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24273" g_stop="24202" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="547" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24201" i_stop="23074" i_length="1128">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.571" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23073" g_stop="22957" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="664" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22956" i_stop="22844" i_length="113">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22843" g_stop="22778" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="665" r_stop="730" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22777" i_stop="22691" i_length="87">
            <donor d_prob="0.380" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="22690" g_stop="22636" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="731" r_stop="785" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E260712" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>785</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260712" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25888" e_stop="25694"/>
          <exon e_start="24661" e_stop="24382"/>
          <exon e_start="24273" e_stop="24202"/>
          <exon e_start="23073" e_stop="22957"/>
          <exon e_start="22843" e_stop="22778"/>
          <exon e_start="22690" e_stop="22636"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTCGTGAGTTTCTCGTGAATCTCTTATCCCCCCTCCCCCTTGCTCTCTGTTTTCTTTTTCGTTCAGTACTTTCAGTTGCCCTGCCCCCCCCCCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGACTTTTACGTGTATTTCTGATAAATAAAGCTCTCTGTTGTCTTTTTTGTTCTCTGCTTTCAGTTGCCCGTCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGGCTTTTACGTGTATTTCTGATAAAGAATGTTCTGTTAAGTGTAAACTTCCATCCCTTTAAAGAAAAGGATAAGGATTTCAGGGTATCTGCAGATTTTGTGATAGAGGGTTTTGCCAGGTGCATTTCAACAATAATATGGGTCAATCACTTAAAGTACACTACATTCAATATGCATTTTTATGGCATAGCATGGAAAGACCTTTCTAAATGAATTGTTGTTCCATTCTCATGTTTGGCCTGAAAAATGGAAGCTTCTTCTATGATATGGAAAAAATGCCAAGCACCGACTATTGAAATTGCTGCTCATTTGGTTTACAATTGTATTTCTTGTCTCTTTAATTTCAAAATGCCCAATATATAGTACATCCAGACTTTTTGCATATTTAACCAGCTTATGTAGAAAAGATTCCATATTCTACGCCAATAGATACATGACATCCATTAAGTTATCATTCTCAAAAAAAAAAGATTCATGACATCCATGTACTGAATCGTCAAAAGAGCCATGCTAAGAAAGCCAAGCTTATACTTGTTGGCCCATGCCGATCAGAGAAAACACTCCTATACTGTGTCTAGTGGGGAGCTTTTTCATCTCAAAGAATAAGCAGATCTTCATATTTTGCATTTTACATTACCTTGTAGAAAGAAGAAAAAAGATATTGTGCATTGCTTAAATTTATACTGCCAGGATAAAAAGGAAGTGATCAAGACCTGCTTACAGAATTCAACTAGCTATATAGTTGTATTTTAGTTGAATTATTTGTGCTGCTCTTTGGCAAACAGGATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACCCGTCCTGGTAAACTGAGTGATCGTTTTCCTCAGCCATATCCAAATGAAGCAGCTGCTAGATTTGCTAATGGGGGAGCCTACCCTCCAGATTTAAGTCTTATTACAAAAGTATTTCCGCCATTCTGTTTCTGTTTTTTTTAAAGAAAAATCTCCTTTCTGTTCCTATTTCAGTCGTTACTGTTATCTGCCCCATTTAGCTTTCATTCTGTTTCTCAGGCACGCCATAATGGTCAAAACTATGTGTTTGCTCTTCTTACTGGCTATCGTGATCCTCCTGCTGGTGTTTCGGTATGCATCTTTGTCCTTTGTGTATCTTAGACTCTTTAAGTTTTCAATCTTGAAGCCTTTATACCTTCTGCACTTTTGGTTTTTGGCTTCCCATATGATTTTTTTTCTTTTGATAACAAAGAAAATCCCTGAGTGGTAGAATGGGCCTTTTAGTAGAAATGTTTTTTTCCCTTTATTACATAGCTGGTTGTGTGGCCTGAGCAACTTTTTCAAGTGGAAGTAATTCTCATTCACGTTTCTCTCTAAACATTTGAATCCAAATGTTGTCTCTAATTTTTATTTTTTAAAAATTCTTTTTGTTATGTAACCTTGTGTTGTGGTAAAAAAAGGAAATTACTCCTAACATGTGCCACAAGAACATTGTGACACAGTGATTTCTTGTTTCCGACTGTAAACAAAGTAGGATAAGTCTCCAACCTTTATCTTGATGTATTTGACTCTGCAGCTGAGAGGACAGGAGGACAGGTTTCTGAACTGCTTTGACACTGATAGGCATCTTACTCTATGTAATCTTAAGCTGCAACTTGAATTTAAATCAACAATCCTACAGTACAAATTCATTAATTTAATCAAATCACTTCTGGAAATAGAGTAGTGAGAGGATCAGAGTATGTTGGATCACCTTTAGTTGCATAGGATCTCACATGAGAGTTTATGATCCTGTTTATTGGATTGTATTAGATAAAATTCAGACAGTAGATCTTAAGGTTTCACTCCGTCACACTGATCCTAGTATCCTACTAATTTGTCAGCTGTATGAAATTCCCATATTGTATTTTGTTATCTTGTATTGGCTGTGCAACAAATTCCAAGAGCAACAGGTGCAAATAAACCGTATAATATAATAATTAACCATGTATATTTGCTTGGATCTTGAAGTCCTACTATGATCCATCATGGGATCCTAAAATGATCCTATCTAGGATCTCCATTCTAGAAACATCTCATGGTGCATTTGTTGGTTTGCTTACTTAGCTTCCTGATTGTTGTGGTTGTTTGTGAGCATAATATAATCAAGTCAACCATTTTATTAGCTGAAGATAATTAGATTACTAGATTTTTTTGTCCACACAATACTGGCGTTCCTTGTCTCTTTCACTGATCTGTCAAGCTACAACCATACTATAGATTCGTGAAGGACTGCACTACAATCCTTACTTCCCTGGTGGAGCTATTGCAATGCCAAAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTGTCCCTGCAACAGAAGCTCAGGTTGGTCCCTTTGTCACTTGATTGGAGGGTGTCTGCATGTAGTTTCATAGAGATGATCTACACTACTATGTTTCAGTATAAATAAGCTAATTTTTCCTTGTATCGTTGTGTAGATGGGGAAAGATGTGGTGTCATTTTTAACTTGGGCTGCTGAACCAGAAATGGAAGAGAGAAAACTGGTCTGTTGTTTTTGGTATTTGCACAGATGATGATGTTTGTGTTATTACTATATGGTAGTTTGTGATGTATTTGCATTTCCACTGCAGATGGGCTTCAAGTGGATATTTGTACTGTCCCTTGCACTGCTTCAAGCTGCTTACT</genome_strand>
        <mrna_strand>TTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACCCGTCCTGGTAAACTGAGTGATCGTTTTCCTCAGCCATATCCAAATGAAGCAGCTGCTAGATTTGCTAATGGGGGAGCCTACCCTCCAGATTTAAGTCTTATTACAAAA............................................................................................................GCACGCCATAATGGTCAAAACTATGTGTTTGCTCTTCTTACTGGCTATCGTGATCCTCCTGCTGGTGTTTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCGTGAAGGACTGCACTACAATCCTTACTTCCCTGGTGGAGCTATTGCAATGCCAAAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTGTCCCTGCAACAGAAGCTCAG.................................................................................................................ATGGGGAAAGATGTGGTGTCATTTTTAACTTGGGCTGCTGAACCAGAAATGGAAGAGAGAAAACTG.......................................................................................ATGGGCTTCAAGTGGATATTTGTACTGTCCCTTGCACTGCTTCAAGCTGCTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E726538" ref_strand="+" ref_description="SGN-E726538 [LA12AD08]">
      <seq>gttttccggatctctcaggcgctgtttgtcctatcgccgtcgatcaaccctctctacggtccttttccgagggcgtgactaacaatgttgggaggtagagcagtccatcgcttactaggcaggaaatttcaatctgaatccacggcatctccaattttatcatcctttgtttccaaaaaagctcaagaagaatttggttcttttggcatgaagtccttcagaacattagcactcattggagcgggtgtatctggacttctaggttttgcgacagtagcatctgctgatgaggctgaacacggattggaatgcccaagctatccttggcctcatgcaggcattcttagttcatacgatcatgcttcgattcgtcgtggtcaccaggtttatcaacaagtatgtgcatcttgtcattcaatgtcacttgtttcatatcgtgacttggtcggggtggcatatacagaggaagaagtaaaggctatggcagctgagattgaggtggcggatgggcctaatgatgagggtgaaatgtttacccgtcctggtaaactgagtgatcgttttcctcagccatatccaaatgaagcagctgctagatttgctaatgggggagcctaccctccagatttaagtcttattacaaaagcacgccataatggtcaaaactatgtgtttgctcttcttactggctatcgtgatcctcctgctggtgtttcgattcgtgaaggactgcactacaatccttacttccctggtggagctattgcaatgccaaaaatgcttaatgatggtgctgttgagtatgaagatggtgtccctgcaacaaaagctcagatggggaaagatgtggtgtcatttttaacttgggctgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="27299" stop="22503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26999" g_stop="26931" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26930" i_stop="26659" i_length="272">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26658" g_stop="26584" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="144" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26583" i_stop="25915" i_length="669">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25914" g_stop="25694" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="365" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25693" i_stop="24662" i_length="1032">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24661" g_stop="24382" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="645" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24381" i_stop="24274" i_length="108">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24273" g_stop="24202" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="717" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="24201" i_stop="23074" i_length="1128">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.571" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="23073" g_stop="22957" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="718" r_stop="834" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="22956" i_stop="22844" i_length="113">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="22843" g_stop="22803" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="835" r_stop="875" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E726538" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>875</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26999" e_stop="26931"/>
          <exon e_start="26658" e_stop="26584"/>
          <exon e_start="25914" e_stop="25694"/>
          <exon e_start="24661" e_stop="24382"/>
          <exon e_start="24273" e_stop="24202"/>
          <exon e_start="23073" e_stop="22957"/>
          <exon e_start="22843" e_stop="22803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTCCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCGGTGAGATATTATCCCTTCGTCTCTCCTCAATTTCTTCGAAGCTCTAGCTTGTTTCATCTTGAAAAGCACCCTAGGATTCCCTTACTTGTTGACGGTGTTTTGAGTAGAACGAATTTGCAGATCGCACAAAGTTGTTTGCTAGGGGAATAAGGAACTGTAGAATGAGTTAGGTTAAATAAATAGTCCGTTCTTAGGCGTATTGACTTAGGAGTAAAATAATCAAATCTGTTGTGTTTTGTTTCCTATTTTTTAATTTTCTGATTTCCTGACAGAGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACGGTATGGCTGTACATTCTTTCTTCGTAGCCGATGCTTATACTCTGAATCTTTGGTTTATGTATATAAGGAGACTTATTGCCTTCAATGTGCATACTCTCTTAATCTCTTCAAAAAATGCTTTTTTTTGTACAATGATGTCTCGTATTTGAAGTGCATTTCATTGGCAACTGGAACACATTTCAGAGCTGTTTAGTTTTTTGTTCCGCAATATGTTGGGTCATGTTTTGATTTCTGTGTAATAGAAGGATAAATTATAATAGAGGATTAGTGTTCTTAAGACTAATAGAAGTGGGTTCTATTAAAGTTTAAGTGTACTAAAATTGTATTCAATATATTCAATCATGCAAACTGGAAAGTTCTCTGTGACAATGCAAATTGAAAAAAGGACTCAGCATTTTGTGACCCTGCATTAAATTGTTTTATGTGAATGCGGTCTGCTTTTTCCTGGTTGTGTTGGCATATATAGTTAAACATGCTGTACTACCTGATAACATAACATCCTTCTTGCGGCAATAAGCTAATAAGTAGTTCGACAAATCACCACTAGCTGTGCTAGAGCTCATATCTGATGTGGGAAATTTTGTGATTGGTACTGATTTAGTTGAAAGACTTGGGTCCTATCAATTTCAAGTTGTACAAATCTTTCATTAAAACTACATAAATTTTCAGGCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTCGTGAGTTTCTCGTGAATCTCTTATCCCCCCTCCCCCTTGCTCTCTGTTTTCTTTTTCGTTCAGTACTTTCAGTTGCCCTGCCCCCCCCCCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGACTTTTACGTGTATTTCTGATAAATAAAGCTCTCTGTTGTCTTTTTTGTTCTCTGCTTTCAGTTGCCCGTCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGGCTTTTACGTGTATTTCTGATAAAGAATGTTCTGTTAAGTGTAAACTTCCATCCCTTTAAAGAAAAGGATAAGGATTTCAGGGTATCTGCAGATTTTGTGATAGAGGGTTTTGCCAGGTGCATTTCAACAATAATATGGGTCAATCACTTAAAGTACACTACATTCAATATGCATTTTTATGGCATAGCATGGAAAGACCTTTCTAAATGAATTGTTGTTCCATTCTCATGTTTGGCCTGAAAAATGGAAGCTTCTTCTATGATATGGAAAAAATGCCAAGCACCGACTATTGAAATTGCTGCTCATTTGGTTTACAATTGTATTTCTTGTCTCTTTAATTTCAAAATGCCCAATATATAGTACATCCAGACTTTTTGCATATTTAACCAGCTTATGTAGAAAAGATTCCATATTCTACGCCAATAGATACATGACATCCATTAAGTTATCATTCTCAAAAAAAAAAGATTCATGACATCCATGTACTGAATCGTCAAAAGAGCCATGCTAAGAAAGCCAAGCTTATACTTGTTGGCCCATGCCGATCAGAGAAAACACTCCTATACTGTGTCTAGTGGGGAGCTTTTTCATCTCAAAGAATAAGCAGATCTTCATATTTTGCATTTTACATTACCTTGTAGAAAGAAGAAAAAAGATATTGTGCATTGCTTAAATTTATACTGCCAGGATAAAAAGGAAGTGATCAAGACCTGCTTACAGAATTCAACTAGCTATATAGTTGTATTTTAGTTGAATTATTTGTGCTGCTCTTTGGCAAACAGGATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACCCGTCCTGGTAAACTGAGTGATCGTTTTCCTCAGCCATATCCAAATGAAGCAGCTGCTAGATTTGCTAATGGGGGAGCCTACCCTCCAGATTTAAGTCTTATTACAAAAGTATTTCCGCCATTCTGTTTCTGTTTTTTTTAAAGAAAAATCTCCTTTCTGTTCCTATTTCAGTCGTTACTGTTATCTGCCCCATTTAGCTTTCATTCTGTTTCTCAGGCACGCCATAATGGTCAAAACTATGTGTTTGCTCTTCTTACTGGCTATCGTGATCCTCCTGCTGGTGTTTCGGTATGCATCTTTGTCCTTTGTGTATCTTAGACTCTTTAAGTTTTCAATCTTGAAGCCTTTATACCTTCTGCACTTTTGGTTTTTGGCTTCCCATATGATTTTTTTTCTTTTGATAACAAAGAAAATCCCTGAGTGGTAGAATGGGCCTTTTAGTAGAAATGTTTTTTTCCCTTTATTACATAGCTGGTTGTGTGGCCTGAGCAACTTTTTCAAGTGGAAGTAATTCTCATTCACGTTTCTCTCTAAACATTTGAATCCAAATGTTGTCTCTAATTTTTATTTTTTAAAAATTCTTTTTGTTATGTAACCTTGTGTTGTGGTAAAAAAAGGAAATTACTCCTAACATGTGCCACAAGAACATTGTGACACAGTGATTTCTTGTTTCCGACTGTAAACAAAGTAGGATAAGTCTCCAACCTTTATCTTGATGTATTTGACTCTGCAGCTGAGAGGACAGGAGGACAGGTTTCTGAACTGCTTTGACACTGATAGGCATCTTACTCTATGTAATCTTAAGCTGCAACTTGAATTTAAATCAACAATCCTACAGTACAAATTCATTAATTTAATCAAATCACTTCTGGAAATAGAGTAGTGAGAGGATCAGAGTATGTTGGATCACCTTTAGTTGCATAGGATCTCACATGAGAGTTTATGATCCTGTTTATTGGATTGTATTAGATAAAATTCAGACAGTAGATCTTAAGGTTTCACTCCGTCACACTGATCCTAGTATCCTACTAATTTGTCAGCTGTATGAAATTCCCATATTGTATTTTGTTATCTTGTATTGGCTGTGCAACAAATTCCAAGAGCAACAGGTGCAAATAAACCGTATAATATAATAATTAACCATGTATATTTGCTTGGATCTTGAAGTCCTACTATGATCCATCATGGGATCCTAAAATGATCCTATCTAGGATCTCCATTCTAGAAACATCTCATGGTGCATTTGTTGGTTTGCTTACTTAGCTTCCTGATTGTTGTGGTTGTTTGTGAGCATAATATAATCAAGTCAACCATTTTATTAGCTGAAGATAATTAGATTACTAGATTTTTTTGTCCACACAATACTGGCGTTCCTTGTCTCTTTCACTGATCTGTCAAGCTACAACCATACTATAGATTCGTGAAGGACTGCACTACAATCCTTACTTCCCTGGTGGAGCTATTGCAATGCCAAAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTGTCCCTGCAACAGAAGCTCAGGTTGGTCCCTTTGTCACTTGATTGGAGGGTGTCTGCATGTAGTTTCATAGAGATGATCTACACTACTATGTTTCAGTATAAATAAGCTAATTTTTCCTTGTATCGTTGTGTAGATGGGGAAAGATGTGGTGTCATTTTTAACTTGGGCTGCTGA</genome_strand>
        <mrna_strand>GTTTTCCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCG................................................................................................................................................................................................................................................................................AGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACCCGTCCTGGTAAACTGAGTGATCGTTTTCCTCAGCCATATCCAAATGAAGCAGCTGCTAGATTTGCTAATGGGGGAGCCTACCCTCCAGATTTAAGTCTTATTACAAAA............................................................................................................GCACGCCATAATGGTCAAAACTATGTGTTTGCTCTTCTTACTGGCTATCGTGATCCTCCTGCTGGTGTTTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCGTGAAGGACTGCACTACAATCCTTACTTCCCTGGTGGAGCTATTGCAATGCCAAAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTGTCCCTGCAACAAAAGCTCAG.................................................................................................................ATGGGGAAAGATGTGGTGTCATTTTTAACTTGGGCTGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E702045" ref_strand="+" ref_description="SGN-E702045 [FA17CF03]">
      <seq>ctggttttccggatctctcaggcgctgtttgtcctatcgccgtcgatcaaccctctctacggtccttttccgagggcgtgactaacaatgttgggaggtagagcagtccatcgcttactaggcaggaaatttcaatctgaatccacggcatctccaattttatcatcctttgtttccaaaaaagctcaagaagaatttggttcttttggcatgaagtccttcagaacattagcactcattggagcgggtgtatctggacttctaggttttgcgacagtagcatctgctgatgaggctgaacacggattggaatgcccaagctatccttggcctcatgcaggcattcttagttcatacgatcatgcttcgattcgtcgtggtcaccaggtttatcaacaagtatgtgcatcttgtcattcaatgtcacttgtttcatatcgtgacttggtcggggtggcatatacagaggaagaagtaaaggctatggcagctgagattgaggtggcggatgggcctaatgatgagggtgaaatgtttacccgtcctggtaaactgagtgatcgttttcctcagccatatccaaatgaagcagctgctagatttgctaatgggggagcctaccctccagatttaagtcttattacaaaagcacgccataatggtcaaaactatgtgtttgctcttcttactggctatcgtgatcctcctgctggtgtttcgattcgtgaaggactgcactacaatccttacttccctggtggagctattgcaatgccaaaaatgcttaatgatggtgctgttgagtatgaagatggtgtccctgcaacagaagctcagatggggaaagatgtggtgtcatttttaccttgggctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="27302" stop="22505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27002" g_stop="26931" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26930" i_stop="26659" i_length="272">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26658" g_stop="26584" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="147" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26583" i_stop="25915" i_length="669">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25914" g_stop="25694" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="368" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25693" i_stop="24662" i_length="1032">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24661" g_stop="24382" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="648" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24381" i_stop="24274" i_length="108">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24273" g_stop="24202" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="649" r_stop="720" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="24201" i_stop="23074" i_length="1128">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.571" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="23073" g_stop="22957" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="721" r_stop="837" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="22956" i_stop="22844" i_length="113">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="22843" g_stop="22805" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="838" r_stop="876" r_length="39" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E702045" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>876</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702045" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27002" e_stop="26931"/>
          <exon e_start="26658" e_stop="26584"/>
          <exon e_start="25914" e_stop="25694"/>
          <exon e_start="24661" e_stop="24382"/>
          <exon e_start="24273" e_stop="24202"/>
          <exon e_start="23073" e_stop="22957"/>
          <exon e_start="22843" e_stop="22805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGTTTTCCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCGGTGAGATATTATCCCTTCGTCTCTCCTCAATTTCTTCGAAGCTCTAGCTTGTTTCATCTTGAAAAGCACCCTAGGATTCCCTTACTTGTTGACGGTGTTTTGAGTAGAACGAATTTGCAGATCGCACAAAGTTGTTTGCTAGGGGAATAAGGAACTGTAGAATGAGTTAGGTTAAATAAATAGTCCGTTCTTAGGCGTATTGACTTAGGAGTAAAATAATCAAATCTGTTGTGTTTTGTTTCCTATTTTTTAATTTTCTGATTTCCTGACAGAGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACGGTATGGCTGTACATTCTTTCTTCGTAGCCGATGCTTATACTCTGAATCTTTGGTTTATGTATATAAGGAGACTTATTGCCTTCAATGTGCATACTCTCTTAATCTCTTCAAAAAATGCTTTTTTTTGTACAATGATGTCTCGTATTTGAAGTGCATTTCATTGGCAACTGGAACACATTTCAGAGCTGTTTAGTTTTTTGTTCCGCAATATGTTGGGTCATGTTTTGATTTCTGTGTAATAGAAGGATAAATTATAATAGAGGATTAGTGTTCTTAAGACTAATAGAAGTGGGTTCTATTAAAGTTTAAGTGTACTAAAATTGTATTCAATATATTCAATCATGCAAACTGGAAAGTTCTCTGTGACAATGCAAATTGAAAAAAGGACTCAGCATTTTGTGACCCTGCATTAAATTGTTTTATGTGAATGCGGTCTGCTTTTTCCTGGTTGTGTTGGCATATATAGTTAAACATGCTGTACTACCTGATAACATAACATCCTTCTTGCGGCAATAAGCTAATAAGTAGTTCGACAAATCACCACTAGCTGTGCTAGAGCTCATATCTGATGTGGGAAATTTTGTGATTGGTACTGATTTAGTTGAAAGACTTGGGTCCTATCAATTTCAAGTTGTACAAATCTTTCATTAAAACTACATAAATTTTCAGGCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTCGTGAGTTTCTCGTGAATCTCTTATCCCCCCTCCCCCTTGCTCTCTGTTTTCTTTTTCGTTCAGTACTTTCAGTTGCCCTGCCCCCCCCCCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGACTTTTACGTGTATTTCTGATAAATAAAGCTCTCTGTTGTCTTTTTTGTTCTCTGCTTTCAGTTGCCCGTCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGGCTTTTACGTGTATTTCTGATAAAGAATGTTCTGTTAAGTGTAAACTTCCATCCCTTTAAAGAAAAGGATAAGGATTTCAGGGTATCTGCAGATTTTGTGATAGAGGGTTTTGCCAGGTGCATTTCAACAATAATATGGGTCAATCACTTAAAGTACACTACATTCAATATGCATTTTTATGGCATAGCATGGAAAGACCTTTCTAAATGAATTGTTGTTCCATTCTCATGTTTGGCCTGAAAAATGGAAGCTTCTTCTATGATATGGAAAAAATGCCAAGCACCGACTATTGAAATTGCTGCTCATTTGGTTTACAATTGTATTTCTTGTCTCTTTAATTTCAAAATGCCCAATATATAGTACATCCAGACTTTTTGCATATTTAACCAGCTTATGTAGAAAAGATTCCATATTCTACGCCAATAGATACATGACATCCATTAAGTTATCATTCTCAAAAAAAAAAGATTCATGACATCCATGTACTGAATCGTCAAAAGAGCCATGCTAAGAAAGCCAAGCTTATACTTGTTGGCCCATGCCGATCAGAGAAAACACTCCTATACTGTGTCTAGTGGGGAGCTTTTTCATCTCAAAGAATAAGCAGATCTTCATATTTTGCATTTTACATTACCTTGTAGAAAGAAGAAAAAAGATATTGTGCATTGCTTAAATTTATACTGCCAGGATAAAAAGGAAGTGATCAAGACCTGCTTACAGAATTCAACTAGCTATATAGTTGTATTTTAGTTGAATTATTTGTGCTGCTCTTTGGCAAACAGGATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACCCGTCCTGGTAAACTGAGTGATCGTTTTCCTCAGCCATATCCAAATGAAGCAGCTGCTAGATTTGCTAATGGGGGAGCCTACCCTCCAGATTTAAGTCTTATTACAAAAGTATTTCCGCCATTCTGTTTCTGTTTTTTTTAAAGAAAAATCTCCTTTCTGTTCCTATTTCAGTCGTTACTGTTATCTGCCCCATTTAGCTTTCATTCTGTTTCTCAGGCACGCCATAATGGTCAAAACTATGTGTTTGCTCTTCTTACTGGCTATCGTGATCCTCCTGCTGGTGTTTCGGTATGCATCTTTGTCCTTTGTGTATCTTAGACTCTTTAAGTTTTCAATCTTGAAGCCTTTATACCTTCTGCACTTTTGGTTTTTGGCTTCCCATATGATTTTTTTTCTTTTGATAACAAAGAAAATCCCTGAGTGGTAGAATGGGCCTTTTAGTAGAAATGTTTTTTTCCCTTTATTACATAGCTGGTTGTGTGGCCTGAGCAACTTTTTCAAGTGGAAGTAATTCTCATTCACGTTTCTCTCTAAACATTTGAATCCAAATGTTGTCTCTAATTTTTATTTTTTAAAAATTCTTTTTGTTATGTAACCTTGTGTTGTGGTAAAAAAAGGAAATTACTCCTAACATGTGCCACAAGAACATTGTGACACAGTGATTTCTTGTTTCCGACTGTAAACAAAGTAGGATAAGTCTCCAACCTTTATCTTGATGTATTTGACTCTGCAGCTGAGAGGACAGGAGGACAGGTTTCTGAACTGCTTTGACACTGATAGGCATCTTACTCTATGTAATCTTAAGCTGCAACTTGAATTTAAATCAACAATCCTACAGTACAAATTCATTAATTTAATCAAATCACTTCTGGAAATAGAGTAGTGAGAGGATCAGAGTATGTTGGATCACCTTTAGTTGCATAGGATCTCACATGAGAGTTTATGATCCTGTTTATTGGATTGTATTAGATAAAATTCAGACAGTAGATCTTAAGGTTTCACTCCGTCACACTGATCCTAGTATCCTACTAATTTGTCAGCTGTATGAAATTCCCATATTGTATTTTGTTATCTTGTATTGGCTGTGCAACAAATTCCAAGAGCAACAGGTGCAAATAAACCGTATAATATAATAATTAACCATGTATATTTGCTTGGATCTTGAAGTCCTACTATGATCCATCATGGGATCCTAAAATGATCCTATCTAGGATCTCCATTCTAGAAACATCTCATGGTGCATTTGTTGGTTTGCTTACTTAGCTTCCTGATTGTTGTGGTTGTTTGTGAGCATAATATAATCAAGTCAACCATTTTATTAGCTGAAGATAATTAGATTACTAGATTTTTTTGTCCACACAATACTGGCGTTCCTTGTCTCTTTCACTGATCTGTCAAGCTACAACCATACTATAGATTCGTGAAGGACTGCACTACAATCCTTACTTCCCTGGTGGAGCTATTGCAATGCCAAAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTGTCCCTGCAACAGAAGCTCAGGTTGGTCCCTTTGTCACTTGATTGGAGGGTGTCTGCATGTAGTTTCATAGAGATGATCTACACTACTATGTTTCAGTATAAATAAGCTAATTTTTCCTTGTATCGTTGTGTAGATGGGGAAAGATGTGGTGTCATTTTTAACTTGGGCTGCT</genome_strand>
        <mrna_strand>CTGGTTTTCCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCG................................................................................................................................................................................................................................................................................AGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACCCGTCCTGGTAAACTGAGTGATCGTTTTCCTCAGCCATATCCAAATGAAGCAGCTGCTAGATTTGCTAATGGGGGAGCCTACCCTCCAGATTTAAGTCTTATTACAAAA............................................................................................................GCACGCCATAATGGTCAAAACTATGTGTTTGCTCTTCTTACTGGCTATCGTGATCCTCCTGCTGGTGTTTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCGTGAAGGACTGCACTACAATCCTTACTTCCCTGGTGGAGCTATTGCAATGCCAAAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTGTCCCTGCAACAGAAGCTCAG.................................................................................................................ATGGGGAAAGATGTGGTGTCATTTTTACCTTGGGCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E706662" ref_strand="+" ref_description="SGN-E706662 [FA30CD01]">
      <seq>gttttgaagactagactggttttccggatctctcaggcgctgtttgtcctatcgccgtcgatcaaccctctctacggtccttttccgagggcgtgactaacaatgttgggaggtagagcagtccatcgcttactaggcaggaaatttcaatctgaatccacggcatctccaattttatcatcctttgtttccaaaaaagctcaagaagaatttggttcttttggcatgaagtccttcagaacattagcactcattggagcgggtgtatctggacttctaggttttgcgacagtagcatctgctgatgaggctgaacacggattggaatgcccaagctatccttggcctcatgcaggcattcttagttcatacgatcatgcttcgattcgtcgtggtcaccaggtttatcaacaagtatgtgcatcttgtcattcaatgtcacttgtttcatatcgtgacttggtcggggtggcatatacagaggaagaagtaaaggctatggcagctgagattgaggtggcggatgggcctaatgatgagggtgaaatgtttacccgtcctggtaaactgagtgatcgttttcctcagccatatccaaatgaagcagctgctagatttgctaatgggggagcctaccctccagatttaagtcttattacaaaagcacgccataatggtcaaaactatgtgtttgctcttcttactggctatcgtgatcctcctgctggtgtttcgattcgtgaaggactgcactacaatccttacttccctggtggagctattgcaatgccaaaaatgcttaatgatggtgctgttgagtatgaagatggtgtccctgcaacagaagctcagatggggaaagatgtggtgtcatttttaacttgggctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="27317" stop="22507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27017" g_stop="26931" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26930" i_stop="26659" i_length="272">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26658" g_stop="26584" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="162" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26583" i_stop="25915" i_length="669">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25914" g_stop="25694" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="383" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25693" i_stop="24662" i_length="1032">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24661" g_stop="24382" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="663" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24381" i_stop="24274" i_length="108">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24273" g_stop="24202" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="664" r_stop="735" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="24201" i_stop="23074" i_length="1128">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.571" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="23073" g_stop="22957" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="736" r_stop="852" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="22956" i_stop="22844" i_length="113">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="22843" g_stop="22807" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="853" r_stop="889" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E706662" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>889</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706662" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27017" e_stop="26931"/>
          <exon e_start="26658" e_stop="26584"/>
          <exon e_start="25914" e_stop="25694"/>
          <exon e_start="24661" e_stop="24382"/>
          <exon e_start="24273" e_stop="24202"/>
          <exon e_start="23073" e_stop="22957"/>
          <exon e_start="22843" e_stop="22807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTGAAGACTAGACTGGTTTTCCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCGGTGAGATATTATCCCTTCGTCTCTCCTCAATTTCTTCGAAGCTCTAGCTTGTTTCATCTTGAAAAGCACCCTAGGATTCCCTTACTTGTTGACGGTGTTTTGAGTAGAACGAATTTGCAGATCGCACAAAGTTGTTTGCTAGGGGAATAAGGAACTGTAGAATGAGTTAGGTTAAATAAATAGTCCGTTCTTAGGCGTATTGACTTAGGAGTAAAATAATCAAATCTGTTGTGTTTTGTTTCCTATTTTTTAATTTTCTGATTTCCTGACAGAGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACGGTATGGCTGTACATTCTTTCTTCGTAGCCGATGCTTATACTCTGAATCTTTGGTTTATGTATATAAGGAGACTTATTGCCTTCAATGTGCATACTCTCTTAATCTCTTCAAAAAATGCTTTTTTTTGTACAATGATGTCTCGTATTTGAAGTGCATTTCATTGGCAACTGGAACACATTTCAGAGCTGTTTAGTTTTTTGTTCCGCAATATGTTGGGTCATGTTTTGATTTCTGTGTAATAGAAGGATAAATTATAATAGAGGATTAGTGTTCTTAAGACTAATAGAAGTGGGTTCTATTAAAGTTTAAGTGTACTAAAATTGTATTCAATATATTCAATCATGCAAACTGGAAAGTTCTCTGTGACAATGCAAATTGAAAAAAGGACTCAGCATTTTGTGACCCTGCATTAAATTGTTTTATGTGAATGCGGTCTGCTTTTTCCTGGTTGTGTTGGCATATATAGTTAAACATGCTGTACTACCTGATAACATAACATCCTTCTTGCGGCAATAAGCTAATAAGTAGTTCGACAAATCACCACTAGCTGTGCTAGAGCTCATATCTGATGTGGGAAATTTTGTGATTGGTACTGATTTAGTTGAAAGACTTGGGTCCTATCAATTTCAAGTTGTACAAATCTTTCATTAAAACTACATAAATTTTCAGGCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTCGTGAGTTTCTCGTGAATCTCTTATCCCCCCTCCCCCTTGCTCTCTGTTTTCTTTTTCGTTCAGTACTTTCAGTTGCCCTGCCCCCCCCCCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGACTTTTACGTGTATTTCTGATAAATAAAGCTCTCTGTTGTCTTTTTTGTTCTCTGCTTTCAGTTGCCCGTCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGGCTTTTACGTGTATTTCTGATAAAGAATGTTCTGTTAAGTGTAAACTTCCATCCCTTTAAAGAAAAGGATAAGGATTTCAGGGTATCTGCAGATTTTGTGATAGAGGGTTTTGCCAGGTGCATTTCAACAATAATATGGGTCAATCACTTAAAGTACACTACATTCAATATGCATTTTTATGGCATAGCATGGAAAGACCTTTCTAAATGAATTGTTGTTCCATTCTCATGTTTGGCCTGAAAAATGGAAGCTTCTTCTATGATATGGAAAAAATGCCAAGCACCGACTATTGAAATTGCTGCTCATTTGGTTTACAATTGTATTTCTTGTCTCTTTAATTTCAAAATGCCCAATATATAGTACATCCAGACTTTTTGCATATTTAACCAGCTTATGTAGAAAAGATTCCATATTCTACGCCAATAGATACATGACATCCATTAAGTTATCATTCTCAAAAAAAAAAGATTCATGACATCCATGTACTGAATCGTCAAAAGAGCCATGCTAAGAAAGCCAAGCTTATACTTGTTGGCCCATGCCGATCAGAGAAAACACTCCTATACTGTGTCTAGTGGGGAGCTTTTTCATCTCAAAGAATAAGCAGATCTTCATATTTTGCATTTTACATTACCTTGTAGAAAGAAGAAAAAAGATATTGTGCATTGCTTAAATTTATACTGCCAGGATAAAAAGGAAGTGATCAAGACCTGCTTACAGAATTCAACTAGCTATATAGTTGTATTTTAGTTGAATTATTTGTGCTGCTCTTTGGCAAACAGGATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACCCGTCCTGGTAAACTGAGTGATCGTTTTCCTCAGCCATATCCAAATGAAGCAGCTGCTAGATTTGCTAATGGGGGAGCCTACCCTCCAGATTTAAGTCTTATTACAAAAGTATTTCCGCCATTCTGTTTCTGTTTTTTTTAAAGAAAAATCTCCTTTCTGTTCCTATTTCAGTCGTTACTGTTATCTGCCCCATTTAGCTTTCATTCTGTTTCTCAGGCACGCCATAATGGTCAAAACTATGTGTTTGCTCTTCTTACTGGCTATCGTGATCCTCCTGCTGGTGTTTCGGTATGCATCTTTGTCCTTTGTGTATCTTAGACTCTTTAAGTTTTCAATCTTGAAGCCTTTATACCTTCTGCACTTTTGGTTTTTGGCTTCCCATATGATTTTTTTTCTTTTGATAACAAAGAAAATCCCTGAGTGGTAGAATGGGCCTTTTAGTAGAAATGTTTTTTTCCCTTTATTACATAGCTGGTTGTGTGGCCTGAGCAACTTTTTCAAGTGGAAGTAATTCTCATTCACGTTTCTCTCTAAACATTTGAATCCAAATGTTGTCTCTAATTTTTATTTTTTAAAAATTCTTTTTGTTATGTAACCTTGTGTTGTGGTAAAAAAAGGAAATTACTCCTAACATGTGCCACAAGAACATTGTGACACAGTGATTTCTTGTTTCCGACTGTAAACAAAGTAGGATAAGTCTCCAACCTTTATCTTGATGTATTTGACTCTGCAGCTGAGAGGACAGGAGGACAGGTTTCTGAACTGCTTTGACACTGATAGGCATCTTACTCTATGTAATCTTAAGCTGCAACTTGAATTTAAATCAACAATCCTACAGTACAAATTCATTAATTTAATCAAATCACTTCTGGAAATAGAGTAGTGAGAGGATCAGAGTATGTTGGATCACCTTTAGTTGCATAGGATCTCACATGAGAGTTTATGATCCTGTTTATTGGATTGTATTAGATAAAATTCAGACAGTAGATCTTAAGGTTTCACTCCGTCACACTGATCCTAGTATCCTACTAATTTGTCAGCTGTATGAAATTCCCATATTGTATTTTGTTATCTTGTATTGGCTGTGCAACAAATTCCAAGAGCAACAGGTGCAAATAAACCGTATAATATAATAATTAACCATGTATATTTGCTTGGATCTTGAAGTCCTACTATGATCCATCATGGGATCCTAAAATGATCCTATCTAGGATCTCCATTCTAGAAACATCTCATGGTGCATTTGTTGGTTTGCTTACTTAGCTTCCTGATTGTTGTGGTTGTTTGTGAGCATAATATAATCAAGTCAACCATTTTATTAGCTGAAGATAATTAGATTACTAGATTTTTTTGTCCACACAATACTGGCGTTCCTTGTCTCTTTCACTGATCTGTCAAGCTACAACCATACTATAGATTCGTGAAGGACTGCACTACAATCCTTACTTCCCTGGTGGAGCTATTGCAATGCCAAAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTGTCCCTGCAACAGAAGCTCAGGTTGGTCCCTTTGTCACTTGATTGGAGGGTGTCTGCATGTAGTTTCATAGAGATGATCTACACTACTATGTTTCAGTATAAATAAGCTAATTTTTCCTTGTATCGTTGTGTAGATGGGGAAAGATGTGGTGTCATTTTTAACTTGGGCTG</genome_strand>
        <mrna_strand>GTTTTGAAGACTAGACTGGTTTTCCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCG................................................................................................................................................................................................................................................................................AGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACCCGTCCTGGTAAACTGAGTGATCGTTTTCCTCAGCCATATCCAAATGAAGCAGCTGCTAGATTTGCTAATGGGGGAGCCTACCCTCCAGATTTAAGTCTTATTACAAAA............................................................................................................GCACGCCATAATGGTCAAAACTATGTGTTTGCTCTTCTTACTGGCTATCGTGATCCTCCTGCTGGTGTTTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCGTGAAGGACTGCACTACAATCCTTACTTCCCTGGTGGAGCTATTGCAATGCCAAAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTGTCCCTGCAACAGAAGCTCAG.................................................................................................................ATGGGGAAAGATGTGGTGTCATTTTTAACTTGGGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E706280" ref_strand="+" ref_description="SGN-E706280 [FA29CB02]">
      <seq>gtttgtcctatcgccgtcgatcaaccctctctacggtccttttccgagggcgtgactaacaatgttgggaggtagagcagtccatcgcttactaggcaggaaatttcaatctgaatccacggcatctccaattttatcatcctttgtttccaaaaaagctcaagaagaatttggttcttttggcatgaagtccttcagaacattagcactcattggagcgggtgtatctggacttctaggttttgcgacagtagcatctgctgatgaggctgaacacggattggaatgcccaagctatccttggcctcatgcaggcattcttagttcatacgatcatgcttcgattcgtcgtggtcaccaggtttatcaacaagtatgtgcatcttgtcattcaatgtcacttgtttcatatcgtgacttggtcggggtggcatatacagaggaagaagtaaaggctatggcagctgagattgaggtggcggatgggcctaatgatgagggtgaaatgtttacccgtcctggtaaactgagtgatcgttttcctcagccatatccaaatgaagcagctgctagatttgctaatgggggagcctaccctccagatttaagtcttattacaaaagcacgccataatggtcaaaactatgtgtttgctcttcttactggctatcgtgatcctcctgctggtgtttcgattcgtgaaggactgcactacaatccttacttccctggtggagctattgcaatgcccaaaatgcttaatgatggtgctgttgagtatgaagatggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="27276" stop="22678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26976" g_stop="26931" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26930" i_stop="26659" i_length="272">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26658" g_stop="26584" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="121" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26583" i_stop="25915" i_length="669">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25914" g_stop="25694" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="342" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25693" i_stop="24662" i_length="1032">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24661" g_stop="24382" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="622" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24381" i_stop="24274" i_length="108">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24273" g_stop="24202" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="623" r_stop="694" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="24201" i_stop="23074" i_length="1128">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.571" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="23073" g_stop="22978" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="695" r_stop="790" r_length="96" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E706280" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706280" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26976" e_stop="26931"/>
          <exon e_start="26658" e_stop="26584"/>
          <exon e_start="25914" e_stop="25694"/>
          <exon e_start="24661" e_stop="24382"/>
          <exon e_start="24273" e_stop="24202"/>
          <exon e_start="23073" e_stop="22978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCGGTGAGATATTATCCCTTCGTCTCTCCTCAATTTCTTCGAAGCTCTAGCTTGTTTCATCTTGAAAAGCACCCTAGGATTCCCTTACTTGTTGACGGTGTTTTGAGTAGAACGAATTTGCAGATCGCACAAAGTTGTTTGCTAGGGGAATAAGGAACTGTAGAATGAGTTAGGTTAAATAAATAGTCCGTTCTTAGGCGTATTGACTTAGGAGTAAAATAATCAAATCTGTTGTGTTTTGTTTCCTATTTTTTAATTTTCTGATTTCCTGACAGAGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACGGTATGGCTGTACATTCTTTCTTCGTAGCCGATGCTTATACTCTGAATCTTTGGTTTATGTATATAAGGAGACTTATTGCCTTCAATGTGCATACTCTCTTAATCTCTTCAAAAAATGCTTTTTTTTGTACAATGATGTCTCGTATTTGAAGTGCATTTCATTGGCAACTGGAACACATTTCAGAGCTGTTTAGTTTTTTGTTCCGCAATATGTTGGGTCATGTTTTGATTTCTGTGTAATAGAAGGATAAATTATAATAGAGGATTAGTGTTCTTAAGACTAATAGAAGTGGGTTCTATTAAAGTTTAAGTGTACTAAAATTGTATTCAATATATTCAATCATGCAAACTGGAAAGTTCTCTGTGACAATGCAAATTGAAAAAAGGACTCAGCATTTTGTGACCCTGCATTAAATTGTTTTATGTGAATGCGGTCTGCTTTTTCCTGGTTGTGTTGGCATATATAGTTAAACATGCTGTACTACCTGATAACATAACATCCTTCTTGCGGCAATAAGCTAATAAGTAGTTCGACAAATCACCACTAGCTGTGCTAGAGCTCATATCTGATGTGGGAAATTTTGTGATTGGTACTGATTTAGTTGAAAGACTTGGGTCCTATCAATTTCAAGTTGTACAAATCTTTCATTAAAACTACATAAATTTTCAGGCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTCGTGAGTTTCTCGTGAATCTCTTATCCCCCCTCCCCCTTGCTCTCTGTTTTCTTTTTCGTTCAGTACTTTCAGTTGCCCTGCCCCCCCCCCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGACTTTTACGTGTATTTCTGATAAATAAAGCTCTCTGTTGTCTTTTTTGTTCTCTGCTTTCAGTTGCCCGTCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGGCTTTTACGTGTATTTCTGATAAAGAATGTTCTGTTAAGTGTAAACTTCCATCCCTTTAAAGAAAAGGATAAGGATTTCAGGGTATCTGCAGATTTTGTGATAGAGGGTTTTGCCAGGTGCATTTCAACAATAATATGGGTCAATCACTTAAAGTACACTACATTCAATATGCATTTTTATGGCATAGCATGGAAAGACCTTTCTAAATGAATTGTTGTTCCATTCTCATGTTTGGCCTGAAAAATGGAAGCTTCTTCTATGATATGGAAAAAATGCCAAGCACCGACTATTGAAATTGCTGCTCATTTGGTTTACAATTGTATTTCTTGTCTCTTTAATTTCAAAATGCCCAATATATAGTACATCCAGACTTTTTGCATATTTAACCAGCTTATGTAGAAAAGATTCCATATTCTACGCCAATAGATACATGACATCCATTAAGTTATCATTCTCAAAAAAAAAAGATTCATGACATCCATGTACTGAATCGTCAAAAGAGCCATGCTAAGAAAGCCAAGCTTATACTTGTTGGCCCATGCCGATCAGAGAAAACACTCCTATACTGTGTCTAGTGGGGAGCTTTTTCATCTCAAAGAATAAGCAGATCTTCATATTTTGCATTTTACATTACCTTGTAGAAAGAAGAAAAAAGATATTGTGCATTGCTTAAATTTATACTGCCAGGATAAAAAGGAAGTGATCAAGACCTGCTTACAGAATTCAACTAGCTATATAGTTGTATTTTAGTTGAATTATTTGTGCTGCTCTTTGGCAAACAGGATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACCCGTCCTGGTAAACTGAGTGATCGTTTTCCTCAGCCATATCCAAATGAAGCAGCTGCTAGATTTGCTAATGGGGGAGCCTACCCTCCAGATTTAAGTCTTATTACAAAAGTATTTCCGCCATTCTGTTTCTGTTTTTTTTAAAGAAAAATCTCCTTTCTGTTCCTATTTCAGTCGTTACTGTTATCTGCCCCATTTAGCTTTCATTCTGTTTCTCAGGCACGCCATAATGGTCAAAACTATGTGTTTGCTCTTCTTACTGGCTATCGTGATCCTCCTGCTGGTGTTTCGGTATGCATCTTTGTCCTTTGTGTATCTTAGACTCTTTAAGTTTTCAATCTTGAAGCCTTTATACCTTCTGCACTTTTGGTTTTTGGCTTCCCATATGATTTTTTTTCTTTTGATAACAAAGAAAATCCCTGAGTGGTAGAATGGGCCTTTTAGTAGAAATGTTTTTTTCCCTTTATTACATAGCTGGTTGTGTGGCCTGAGCAACTTTTTCAAGTGGAAGTAATTCTCATTCACGTTTCTCTCTAAACATTTGAATCCAAATGTTGTCTCTAATTTTTATTTTTTAAAAATTCTTTTTGTTATGTAACCTTGTGTTGTGGTAAAAAAAGGAAATTACTCCTAACATGTGCCACAAGAACATTGTGACACAGTGATTTCTTGTTTCCGACTGTAAACAAAGTAGGATAAGTCTCCAACCTTTATCTTGATGTATTTGACTCTGCAGCTGAGAGGACAGGAGGACAGGTTTCTGAACTGCTTTGACACTGATAGGCATCTTACTCTATGTAATCTTAAGCTGCAACTTGAATTTAAATCAACAATCCTACAGTACAAATTCATTAATTTAATCAAATCACTTCTGGAAATAGAGTAGTGAGAGGATCAGAGTATGTTGGATCACCTTTAGTTGCATAGGATCTCACATGAGAGTTTATGATCCTGTTTATTGGATTGTATTAGATAAAATTCAGACAGTAGATCTTAAGGTTTCACTCCGTCACACTGATCCTAGTATCCTACTAATTTGTCAGCTGTATGAAATTCCCATATTGTATTTTGTTATCTTGTATTGGCTGTGCAACAAATTCCAAGAGCAACAGGTGCAAATAAACCGTATAATATAATAATTAACCATGTATATTTGCTTGGATCTTGAAGTCCTACTATGATCCATCATGGGATCCTAAAATGATCCTATCTAGGATCTCCATTCTAGAAACATCTCATGGTGCATTTGTTGGTTTGCTTACTTAGCTTCCTGATTGTTGTGGTTGTTTGTGAGCATAATATAATCAAGTCAACCATTTTATTAGCTGAAGATAATTAGATTACTAGATTTTTTTGTCCACACAATACTGGCGTTCCTTGTCTCTTTCACTGATCTGTCAAGCTACAACCATACTATAGATTCGTGAAGGACTGCACTACAATCCTTACTTCCCTGGTGGAGCTATTGCAATGCCAAAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGT</genome_strand>
        <mrna_strand>GTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCG................................................................................................................................................................................................................................................................................AGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACCCGTCCTGGTAAACTGAGTGATCGTTTTCCTCAGCCATATCCAAATGAAGCAGCTGCTAGATTTGCTAATGGGGGAGCCTACCCTCCAGATTTAAGTCTTATTACAAAA............................................................................................................GCACGCCATAATGGTCAAAACTATGTGTTTGCTCTTCTTACTGGCTATCGTGATCCTCCTGCTGGTGTTTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCGTGAAGGACTGCACTACAATCCTTACTTCCCTGGTGGAGCTATTGCAATGCCCAAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E328270" ref_strand="+" ref_description="SGN-E328270 [cTOC-21-P23]">
      <seq>ttcttagttcatacgatcatgcttcgattcgtcgtgggtaccacccttatcaacaagtatgtgcatcttgtcattcaatgtcacttgtttcatatcgtgacttggtcggggtggcatatacagaggaagaagtaaaggctatggcagctgagattgaggtggcggatgggcctaatgatgagggtgaaatgtttacccgtcctggtaaactgagtgatcgttttcctcagccatatccaaatgaagcagctgctagatttgctaatgggggagcctaccctccagatttaagtcttattacaaaagcacgccataatggtcaaaactatgtgtttgctcttcttactggctatcgtgatcctcctgctggtgtttcgattcgtgaaggactgcactacaatccttacttccctggtggagctattgcaatgccaaaaaatgcttaatgatggtgctgttgagtatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="26018" stop="22684"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25718" g_stop="25694" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25693" i_stop="24662" i_length="1032">
            <donor d_prob="0.887" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24661" g_stop="24382" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="305" r_length="280" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24381" i_stop="24274" i_length="108">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24273" g_stop="24202" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="377" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24201" i_stop="23074" i_length="1128">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.571" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23073" g_stop="22984" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="468" r_length="91" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E328270" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25718" e_stop="25694"/>
          <exon e_start="24661" e_stop="24382"/>
          <exon e_start="24273" e_stop="24202"/>
          <exon e_start="23073" e_stop="22984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTAGTTCATACGATCATGCTTCGTGAGTTTCTCGTGAATCTCTTATCCCCCCTCCCCCTTGCTCTCTGTTTTCTTTTTCGTTCAGTACTTTCAGTTGCCCTGCCCCCCCCCCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGACTTTTACGTGTATTTCTGATAAATAAAGCTCTCTGTTGTCTTTTTTGTTCTCTGCTTTCAGTTGCCCGTCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGGCTTTTACGTGTATTTCTGATAAAGAATGTTCTGTTAAGTGTAAACTTCCATCCCTTTAAAGAAAAGGATAAGGATTTCAGGGTATCTGCAGATTTTGTGATAGAGGGTTTTGCCAGGTGCATTTCAACAATAATATGGGTCAATCACTTAAAGTACACTACATTCAATATGCATTTTTATGGCATAGCATGGAAAGACCTTTCTAAATGAATTGTTGTTCCATTCTCATGTTTGGCCTGAAAAATGGAAGCTTCTTCTATGATATGGAAAAAATGCCAAGCACCGACTATTGAAATTGCTGCTCATTTGGTTTACAATTGTATTTCTTGTCTCTTTAATTTCAAAATGCCCAATATATAGTACATCCAGACTTTTTGCATATTTAACCAGCTTATGTAGAAAAGATTCCATATTCTACGCCAATAGATACATGACATCCATTAAGTTATCATTCTCAAAAAAAAAAGATTCATGACATCCATGTACTGAATCGTCAAAAGAGCCATGCTAAGAAAGCCAAGCTTATACTTGTTGGCCCATGCCGATCAGAGAAAACACTCCTATACTGTGTCTAGTGGGGAGCTTTTTCATCTCAAAGAATAAGCAGATCTTCATATTTTGCATTTTACATTACCTTGTAGAAAGAAGAAAAAAGATATTGTGCATTGCTTAAATTTATACTGCCAGGATAAAAAGGAAGTGATCAAGACCTGCTTACAGAATTCAACTAGCTATATAGTTGTATTTTAGTTGAATTATTTGTGCTGCTCTTTGGCAAACAGGATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACCCGTCCTGGTAAACTGAGTGATCGTTTTCCTCAGCCATATCCAAATGAAGCAGCTGCTAGATTTGCTAATGGGGGAGCCTACCCTCCAGATTTAAGTCTTATTACAAAAGTATTTCCGCCATTCTGTTTCTGTTTTTTTTAAAGAAAAATCTCCTTTCTGTTCCTATTTCAGTCGTTACTGTTATCTGCCCCATTTAGCTTTCATTCTGTTTCTCAGGCACGCCATAATGGTCAAAACTATGTGTTTGCTCTTCTTACTGGCTATCGTGATCCTCCTGCTGGTGTTTCGGTATGCATCTTTGTCCTTTGTGTATCTTAGACTCTTTAAGTTTTCAATCTTGAAGCCTTTATACCTTCTGCACTTTTGGTTTTTGGCTTCCCATATGATTTTTTTTCTTTTGATAACAAAGAAAATCCCTGAGTGGTAGAATGGGCCTTTTAGTAGAAATGTTTTTTTCCCTTTATTACATAGCTGGTTGTGTGGCCTGAGCAACTTTTTCAAGTGGAAGTAATTCTCATTCACGTTTCTCTCTAAACATTTGAATCCAAATGTTGTCTCTAATTTTTATTTTTTAAAAATTCTTTTTGTTATGTAACCTTGTGTTGTGGTAAAAAAAGGAAATTACTCCTAACATGTGCCACAAGAACATTGTGACACAGTGATTTCTTGTTTCCGACTGTAAACAAAGTAGGATAAGTCTCCAACCTTTATCTTGATGTATTTGACTCTGCAGCTGAGAGGACAGGAGGACAGGTTTCTGAACTGCTTTGACACTGATAGGCATCTTACTCTATGTAATCTTAAGCTGCAACTTGAATTTAAATCAACAATCCTACAGTACAAATTCATTAATTTAATCAAATCACTTCTGGAAATAGAGTAGTGAGAGGATCAGAGTATGTTGGATCACCTTTAGTTGCATAGGATCTCACATGAGAGTTTATGATCCTGTTTATTGGATTGTATTAGATAAAATTCAGACAGTAGATCTTAAGGTTTCACTCCGTCACACTGATCCTAGTATCCTACTAATTTGTCAGCTGTATGAAATTCCCATATTGTATTTTGTTATCTTGTATTGGCTGTGCAACAAATTCCAAGAGCAACAGGTGCAAATAAACCGTATAATATAATAATTAACCATGTATATTTGCTTGGATCTTGAAGTCCTACTATGATCCATCATGGGATCCTAAAATGATCCTATCTAGGATCTCCATTCTAGAAACATCTCATGGTGCATTTGTTGGTTTGCTTACTTAGCTTCCTGATTGTTGTGGTTGTTTGTGAGCATAATATAATCAAGTCAACCATTTTATTAGCTGAAGATAATTAGATTACTAGATTTTTTTGTCCACACAATACTGGCGTTCCTTGTCTCTTTCACTGATCTGTCAAGCTACAACCATACTATAGATTCGTGAAGGACTGCACTACAATCCTTACTTCCCTGGTGGAGCTATTGCAATGCC-AAAAATGCTTAATGATGGTGCTGTTGAGTATGAA</genome_strand>
        <mrna_strand>TTCTTAGTTCATACGATCATGCTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCGTCGTGGGTACCACCCTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACCCGTCCTGGTAAACTGAGTGATCGTTTTCCTCAGCCATATCCAAATGAAGCAGCTGCTAGATTTGCTAATGGGGGAGCCTACCCTCCAGATTTAAGTCTTATTACAAAA............................................................................................................GCACGCCATAATGGTCAAAACTATGTGTTTGCTCTTCTTACTGGCTATCGTGATCCTCCTGCTGGTGTTTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCGTGAAGGACTGCACTACAATCCTTACTTCCCTGGTGGAGCTATTGCAATGCCAAAAAATGCTTAATGATGGTGCTGTTGAGTATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E321313" ref_strand="+" ref_description="SGN-E321313 [cTOB-23-F13]">
      <seq>ttttccggatctctcaggcgctgtttgtcctatcgccgtcgatcaaccctctctacggtccttttccgagggcgtgactaacaatgttgggaggtagagcagtccatcgcttactaggcaggaaatttcaatctgaatccacggcatctccaattttatcatcctttgtttccaaaaaagctcaagaagaatttggttcttttggcatgaagtccttcagaacattagcactcattggagcgggtgtatctggacttctaggttttgcgacagtagcatctgctgatgaggctgaacacggattggaatgcccaagctatccttggcctcatgcaggcattcttagttcatacgatcatgcttcgattcgtcgtggtcaccaggtttatcaacaagtatgtgcatcttgtcattcaatgtcacttgtttcatatcgtgacttggtcggggtggcatatacagaggaagaagtaaaggctatggcagctgagattgaggtggcggatgggcctaatgatgagggtgaaatgtttacccgtcctggtaaactgagtgatcgttttcctcagccatatccaaatgaagcagctgctagatttgctaatgggggagcctaccctccagatttaagtcttattacaaaagcacgccataatggtcaaaactatgtgtttgctcttcttactggctatcgtgatcctcctgctgggtgttcgattcgtgaaggactgcactancatccttacttccctggtggagctatttgcatgccaaaatgcttaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="27298" stop="22703"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26998" g_stop="26931" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26930" i_stop="26659" i_length="272">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26658" g_stop="26584" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="143" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26583" i_stop="25915" i_length="669">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25914" g_stop="25694" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="364" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25693" i_stop="24662" i_length="1032">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24661" g_stop="24382" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="644" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24381" i_stop="24274" i_length="108">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24273" g_stop="24202" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="716" r_length="72" r_score="0.958"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="24201" i_stop="23074" i_length="1128">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.571" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="23073" g_stop="23003" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="717" r_stop="786" r_length="70" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E321313" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>787</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321313" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26998" e_stop="26931"/>
          <exon e_start="26658" e_stop="26584"/>
          <exon e_start="25914" e_stop="25694"/>
          <exon e_start="24661" e_stop="24382"/>
          <exon e_start="24273" e_stop="24202"/>
          <exon e_start="23073" e_stop="23003"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCGGTGAGATATTATCCCTTCGTCTCTCCTCAATTTCTTCGAAGCTCTAGCTTGTTTCATCTTGAAAAGCACCCTAGGATTCCCTTACTTGTTGACGGTGTTTTGAGTAGAACGAATTTGCAGATCGCACAAAGTTGTTTGCTAGGGGAATAAGGAACTGTAGAATGAGTTAGGTTAAATAAATAGTCCGTTCTTAGGCGTATTGACTTAGGAGTAAAATAATCAAATCTGTTGTGTTTTGTTTCCTATTTTTTAATTTTCTGATTTCCTGACAGAGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACGGTATGGCTGTACATTCTTTCTTCGTAGCCGATGCTTATACTCTGAATCTTTGGTTTATGTATATAAGGAGACTTATTGCCTTCAATGTGCATACTCTCTTAATCTCTTCAAAAAATGCTTTTTTTTGTACAATGATGTCTCGTATTTGAAGTGCATTTCATTGGCAACTGGAACACATTTCAGAGCTGTTTAGTTTTTTGTTCCGCAATATGTTGGGTCATGTTTTGATTTCTGTGTAATAGAAGGATAAATTATAATAGAGGATTAGTGTTCTTAAGACTAATAGAAGTGGGTTCTATTAAAGTTTAAGTGTACTAAAATTGTATTCAATATATTCAATCATGCAAACTGGAAAGTTCTCTGTGACAATGCAAATTGAAAAAAGGACTCAGCATTTTGTGACCCTGCATTAAATTGTTTTATGTGAATGCGGTCTGCTTTTTCCTGGTTGTGTTGGCATATATAGTTAAACATGCTGTACTACCTGATAACATAACATCCTTCTTGCGGCAATAAGCTAATAAGTAGTTCGACAAATCACCACTAGCTGTGCTAGAGCTCATATCTGATGTGGGAAATTTTGTGATTGGTACTGATTTAGTTGAAAGACTTGGGTCCTATCAATTTCAAGTTGTACAAATCTTTCATTAAAACTACATAAATTTTCAGGCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTCGTGAGTTTCTCGTGAATCTCTTATCCCCCCTCCCCCTTGCTCTCTGTTTTCTTTTTCGTTCAGTACTTTCAGTTGCCCTGCCCCCCCCCCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGACTTTTACGTGTATTTCTGATAAATAAAGCTCTCTGTTGTCTTTTTTGTTCTCTGCTTTCAGTTGCCCGTCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGGCTTTTACGTGTATTTCTGATAAAGAATGTTCTGTTAAGTGTAAACTTCCATCCCTTTAAAGAAAAGGATAAGGATTTCAGGGTATCTGCAGATTTTGTGATAGAGGGTTTTGCCAGGTGCATTTCAACAATAATATGGGTCAATCACTTAAAGTACACTACATTCAATATGCATTTTTATGGCATAGCATGGAAAGACCTTTCTAAATGAATTGTTGTTCCATTCTCATGTTTGGCCTGAAAAATGGAAGCTTCTTCTATGATATGGAAAAAATGCCAAGCACCGACTATTGAAATTGCTGCTCATTTGGTTTACAATTGTATTTCTTGTCTCTTTAATTTCAAAATGCCCAATATATAGTACATCCAGACTTTTTGCATATTTAACCAGCTTATGTAGAAAAGATTCCATATTCTACGCCAATAGATACATGACATCCATTAAGTTATCATTCTCAAAAAAAAAAGATTCATGACATCCATGTACTGAATCGTCAAAAGAGCCATGCTAAGAAAGCCAAGCTTATACTTGTTGGCCCATGCCGATCAGAGAAAACACTCCTATACTGTGTCTAGTGGGGAGCTTTTTCATCTCAAAGAATAAGCAGATCTTCATATTTTGCATTTTACATTACCTTGTAGAAAGAAGAAAAAAGATATTGTGCATTGCTTAAATTTATACTGCCAGGATAAAAAGGAAGTGATCAAGACCTGCTTACAGAATTCAACTAGCTATATAGTTGTATTTTAGTTGAATTATTTGTGCTGCTCTTTGGCAAACAGGATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACCCGTCCTGGTAAACTGAGTGATCGTTTTCCTCAGCCATATCCAAATGAAGCAGCTGCTAGATTTGCTAATGGGGGAGCCTACCCTCCAGATTTAAGTCTTATTACAAAAGTATTTCCGCCATTCTGTTTCTGTTTTTTTTAAAGAAAAATCTCCTTTCTGTTCCTATTTCAGTCGTTACTGTTATCTGCCCCATTTAGCTTTCATTCTGTTTCTCAGGCACGCCATAATGGTCAAAACTATGTGTTTGCTCTTCTTACTGGCTATCGTGATCCTCCTGCTGGTGTTTCGGTATGCATCTTTGTCCTTTGTGTATCTTAGACTCTTTAAGTTTTCAATCTTGAAGCCTTTATACCTTCTGCACTTTTGGTTTTTGGCTTCCCATATGATTTTTTTTCTTTTGATAACAAAGAAAATCCCTGAGTGGTAGAATGGGCCTTTTAGTAGAAATGTTTTTTTCCCTTTATTACATAGCTGGTTGTGTGGCCTGAGCAACTTTTTCAAGTGGAAGTAATTCTCATTCACGTTTCTCTCTAAACATTTGAATCCAAATGTTGTCTCTAATTTTTATTTTTTAAAAATTCTTTTTGTTATGTAACCTTGTGTTGTGGTAAAAAAAGGAAATTACTCCTAACATGTGCCACAAGAACATTGTGACACAGTGATTTCTTGTTTCCGACTGTAAACAAAGTAGGATAAGTCTCCAACCTTTATCTTGATGTATTTGACTCTGCAGCTGAGAGGACAGGAGGACAGGTTTCTGAACTGCTTTGACACTGATAGGCATCTTACTCTATGTAATCTTAAGCTGCAACTTGAATTTAAATCAACAATCCTACAGTACAAATTCATTAATTTAATCAAATCACTTCTGGAAATAGAGTAGTGAGAGGATCAGAGTATGTTGGATCACCTTTAGTTGCATAGGATCTCACATGAGAGTTTATGATCCTGTTTATTGGATTGTATTAGATAAAATTCAGACAGTAGATCTTAAGGTTTCACTCCGTCACACTGATCCTAGTATCCTACTAATTTGTCAGCTGTATGAAATTCCCATATTGTATTTTGTTATCTTGTATTGGCTGTGCAACAAATTCCAAGAGCAACAGGTGCAAATAAACCGTATAATATAATAATTAACCATGTATATTTGCTTGGATCTTGAAGTCCTACTATGATCCATCATGGGATCCTAAAATGATCCTATCTAGGATCTCCATTCTAGAAACATCTCATGGTGCATTTGTTGGTTTGCTTACTTAGCTTCCTGATTGTTGTGGTTGTTTGTGAGCATAATATAATCAAGTCAACCATTTTATTAGCTGAAGATAATTAGATTACTAGATTTTTTTGTCCACACAATACTGGCGTTCCTTGTCTCTTTCACTGATCTGTCAAGCTACAACCATACTATAGATTCGTGAAGGACTGCACTACAATCCTTACTTCCCTGGTGGAGCTATTGCAATGCCAAAAATGCTTAATGA</genome_strand>
        <mrna_strand>TTTTCCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCG................................................................................................................................................................................................................................................................................AGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACCCGTCCTGGTAAACTGAGTGATCGTTTTCCTCAGCCATATCCAAATGAAGCAGCTGCTAGATTTGCTAATGGGGGAGCCTACCCTCCAGATTTAAGTCTTATTACAAAA............................................................................................................GCACGCCATAATGGTCAAAACTATGTGTTTGCTCTTCTTACTGGCTATCGTGATCCTCCTGCTGGGTGTTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCGTGAAGGACTGCACTANCATCCTTACTTCCCTGGTGGAGCTATTTGCATGCC-AAAATGCTTAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E317807" ref_strand="+" ref_description="SGN-E317807 [cTOA-30-O8]">
      <seq>aatgttgggaggtagagcagtccatcgcttactaggcaggaaatttcaatctgaatccacggcatctccaattttatcatcctttgtttccaaaaaagctcaagaagaatttggttcttttggcatgaagtccttcagaacattagcactcattggagcgggtgtatctggacttctaggttttgcgacagtagcatctgctgatgaggctgaacacggattggaatgcccaagctatccttggcctcatgcaggcattcttagttcatacgatcatgcttcgattcgtcgtggtcaccaggtttatcaacaagtatgtgcatcttgtcattcaatgtcacttgtttcatatcgtgacttggtcggggtggcatatacagaggaagaagtaaaggctatggcagctgagattgaggtggcggatgggcctaatgatgagggtgaaatgtttacccgtcctggtaaactgagtgatcgttttcctcagccatatccaaatgaagcagctgctagatttgctaatgggggagcctaccctccagatttaagtcttattacaaaagcacgccataatggtcaaaactatgtgtttgctcttcttactggctatcgtgatcctcctgctggtgtttcgattcgtgaaggactgcactacatccttacttccctggtggagctatgcaatgccaaaatgcttaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="26944" stop="22703"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26644" g_stop="26584" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26583" i_stop="25915" i_length="669">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25914" g_stop="25694" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="282" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25693" i_stop="24662" i_length="1032">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24661" g_stop="24382" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="562" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24381" i_stop="24274" i_length="108">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24273" g_stop="24202" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="634" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24201" i_stop="23074" i_length="1128">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.571" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23073" g_stop="23003" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="635" r_stop="702" r_length="68" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E317807" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317807" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26644" e_stop="26584"/>
          <exon e_start="25914" e_stop="25694"/>
          <exon e_start="24661" e_stop="24382"/>
          <exon e_start="24273" e_stop="24202"/>
          <exon e_start="23073" e_stop="23003"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACGGTATGGCTGTACATTCTTTCTTCGTAGCCGATGCTTATACTCTGAATCTTTGGTTTATGTATATAAGGAGACTTATTGCCTTCAATGTGCATACTCTCTTAATCTCTTCAAAAAATGCTTTTTTTTGTACAATGATGTCTCGTATTTGAAGTGCATTTCATTGGCAACTGGAACACATTTCAGAGCTGTTTAGTTTTTTGTTCCGCAATATGTTGGGTCATGTTTTGATTTCTGTGTAATAGAAGGATAAATTATAATAGAGGATTAGTGTTCTTAAGACTAATAGAAGTGGGTTCTATTAAAGTTTAAGTGTACTAAAATTGTATTCAATATATTCAATCATGCAAACTGGAAAGTTCTCTGTGACAATGCAAATTGAAAAAAGGACTCAGCATTTTGTGACCCTGCATTAAATTGTTTTATGTGAATGCGGTCTGCTTTTTCCTGGTTGTGTTGGCATATATAGTTAAACATGCTGTACTACCTGATAACATAACATCCTTCTTGCGGCAATAAGCTAATAAGTAGTTCGACAAATCACCACTAGCTGTGCTAGAGCTCATATCTGATGTGGGAAATTTTGTGATTGGTACTGATTTAGTTGAAAGACTTGGGTCCTATCAATTTCAAGTTGTACAAATCTTTCATTAAAACTACATAAATTTTCAGGCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTCGTGAGTTTCTCGTGAATCTCTTATCCCCCCTCCCCCTTGCTCTCTGTTTTCTTTTTCGTTCAGTACTTTCAGTTGCCCTGCCCCCCCCCCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGACTTTTACGTGTATTTCTGATAAATAAAGCTCTCTGTTGTCTTTTTTGTTCTCTGCTTTCAGTTGCCCGTCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGGCTTTTACGTGTATTTCTGATAAAGAATGTTCTGTTAAGTGTAAACTTCCATCCCTTTAAAGAAAAGGATAAGGATTTCAGGGTATCTGCAGATTTTGTGATAGAGGGTTTTGCCAGGTGCATTTCAACAATAATATGGGTCAATCACTTAAAGTACACTACATTCAATATGCATTTTTATGGCATAGCATGGAAAGACCTTTCTAAATGAATTGTTGTTCCATTCTCATGTTTGGCCTGAAAAATGGAAGCTTCTTCTATGATATGGAAAAAATGCCAAGCACCGACTATTGAAATTGCTGCTCATTTGGTTTACAATTGTATTTCTTGTCTCTTTAATTTCAAAATGCCCAATATATAGTACATCCAGACTTTTTGCATATTTAACCAGCTTATGTAGAAAAGATTCCATATTCTACGCCAATAGATACATGACATCCATTAAGTTATCATTCTCAAAAAAAAAAGATTCATGACATCCATGTACTGAATCGTCAAAAGAGCCATGCTAAGAAAGCCAAGCTTATACTTGTTGGCCCATGCCGATCAGAGAAAACACTCCTATACTGTGTCTAGTGGGGAGCTTTTTCATCTCAAAGAATAAGCAGATCTTCATATTTTGCATTTTACATTACCTTGTAGAAAGAAGAAAAAAGATATTGTGCATTGCTTAAATTTATACTGCCAGGATAAAAAGGAAGTGATCAAGACCTGCTTACAGAATTCAACTAGCTATATAGTTGTATTTTAGTTGAATTATTTGTGCTGCTCTTTGGCAAACAGGATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACCCGTCCTGGTAAACTGAGTGATCGTTTTCCTCAGCCATATCCAAATGAAGCAGCTGCTAGATTTGCTAATGGGGGAGCCTACCCTCCAGATTTAAGTCTTATTACAAAAGTATTTCCGCCATTCTGTTTCTGTTTTTTTTAAAGAAAAATCTCCTTTCTGTTCCTATTTCAGTCGTTACTGTTATCTGCCCCATTTAGCTTTCATTCTGTTTCTCAGGCACGCCATAATGGTCAAAACTATGTGTTTGCTCTTCTTACTGGCTATCGTGATCCTCCTGCTGGTGTTTCGGTATGCATCTTTGTCCTTTGTGTATCTTAGACTCTTTAAGTTTTCAATCTTGAAGCCTTTATACCTTCTGCACTTTTGGTTTTTGGCTTCCCATATGATTTTTTTTCTTTTGATAACAAAGAAAATCCCTGAGTGGTAGAATGGGCCTTTTAGTAGAAATGTTTTTTTCCCTTTATTACATAGCTGGTTGTGTGGCCTGAGCAACTTTTTCAAGTGGAAGTAATTCTCATTCACGTTTCTCTCTAAACATTTGAATCCAAATGTTGTCTCTAATTTTTATTTTTTAAAAATTCTTTTTGTTATGTAACCTTGTGTTGTGGTAAAAAAAGGAAATTACTCCTAACATGTGCCACAAGAACATTGTGACACAGTGATTTCTTGTTTCCGACTGTAAACAAAGTAGGATAAGTCTCCAACCTTTATCTTGATGTATTTGACTCTGCAGCTGAGAGGACAGGAGGACAGGTTTCTGAACTGCTTTGACACTGATAGGCATCTTACTCTATGTAATCTTAAGCTGCAACTTGAATTTAAATCAACAATCCTACAGTACAAATTCATTAATTTAATCAAATCACTTCTGGAAATAGAGTAGTGAGAGGATCAGAGTATGTTGGATCACCTTTAGTTGCATAGGATCTCACATGAGAGTTTATGATCCTGTTTATTGGATTGTATTAGATAAAATTCAGACAGTAGATCTTAAGGTTTCACTCCGTCACACTGATCCTAGTATCCTACTAATTTGTCAGCTGTATGAAATTCCCATATTGTATTTTGTTATCTTGTATTGGCTGTGCAACAAATTCCAAGAGCAACAGGTGCAAATAAACCGTATAATATAATAATTAACCATGTATATTTGCTTGGATCTTGAAGTCCTACTATGATCCATCATGGGATCCTAAAATGATCCTATCTAGGATCTCCATTCTAGAAACATCTCATGGTGCATTTGTTGGTTTGCTTACTTAGCTTCCTGATTGTTGTGGTTGTTTGTGAGCATAATATAATCAAGTCAACCATTTTATTAGCTGAAGATAATTAGATTACTAGATTTTTTTGTCCACACAATACTGGCGTTCCTTGTCTCTTTCACTGATCTGTCAAGCTACAACCATACTATAGATTCGTGAAGGACTGCACTACAATCCTTACTTCCCTGGTGGAGCTATTGCAATGCCAAAAATGCTTAATGA</genome_strand>
        <mrna_strand>AATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACCCGTCCTGGTAAACTGAGTGATCGTTTTCCTCAGCCATATCCAAATGAAGCAGCTGCTAGATTTGCTAATGGGGGAGCCTACCCTCCAGATTTAAGTCTTATTACAAAA............................................................................................................GCACGCCATAATGGTCAAAACTATGTGTTTGCTCTTCTTACTGGCTATCGTGATCCTCCTGCTGGTGTTTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCGTGAAGGACTGCACTAC-ATCCTTACTTCCCTGGTGGAGCTA-TGCAATGCC-AAAATGCTTAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E710479" ref_strand="+" ref_description="SGN-E710479 [FA55CC03]">
      <seq>gttttgaagactagactggttttccggatctctcaggcgctgtttgtcctatcgccgtcgatcaaccctctctacggtccttttccgagggcgtgactaacaatgttgggaggtagagcagtccatcgcttactaggcaggaaatttcaatctgaatccacggcatctccaattttatcatcctttgtttccaaaaaagctcaagaagaatttggttcttttggcatgaagtccttcagaacattagcactcattggagcgggtgtatctggacttctaggttttgcgacagtagcatctgctgatgaggctgaacacggattggaatgcccaagctatccttggcctcatgcaggcattcttagttcatacgatcatgcttcgattcgtcgtggtcaccaggtttatcaacaagtatgtgcatcttgtcattcaatgtcacttgtttcatatcgtgacttggtcggggtggcatatacagaggaagaagtaaaggctatggcagctgagattgaggtggcggatgggcctaatgatgagggtgaaatgtttacccgtcctggtaaactgagtgatcgttttcctcagccatatccaaatgaagcagctgctagatttgctaatgggggagcctaccctccagatttaagtcttattacaaaagcacgccataatggtcaaaactatgtgtttgctcttcttactggctatcgtgatcctcctgctggtgtttcgattcgtgaaggactgcactacaatccttacttccctggtggagctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="27317" stop="22727"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27017" g_stop="26931" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26930" i_stop="26659" i_length="272">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26658" g_stop="26584" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="162" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26583" i_stop="25915" i_length="669">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25914" g_stop="25694" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="383" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25693" i_stop="24662" i_length="1032">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24661" g_stop="24382" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="663" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24381" i_stop="24274" i_length="108">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24273" g_stop="24202" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="664" r_stop="735" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="24201" i_stop="23074" i_length="1128">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.571" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="23073" g_stop="23027" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="736" r_stop="782" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E710479" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>782</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710479" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27017" e_stop="26931"/>
          <exon e_start="26658" e_stop="26584"/>
          <exon e_start="25914" e_stop="25694"/>
          <exon e_start="24661" e_stop="24382"/>
          <exon e_start="24273" e_stop="24202"/>
          <exon e_start="23073" e_stop="23027"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTGAAGACTAGACTGGTTTTCCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCGGTGAGATATTATCCCTTCGTCTCTCCTCAATTTCTTCGAAGCTCTAGCTTGTTTCATCTTGAAAAGCACCCTAGGATTCCCTTACTTGTTGACGGTGTTTTGAGTAGAACGAATTTGCAGATCGCACAAAGTTGTTTGCTAGGGGAATAAGGAACTGTAGAATGAGTTAGGTTAAATAAATAGTCCGTTCTTAGGCGTATTGACTTAGGAGTAAAATAATCAAATCTGTTGTGTTTTGTTTCCTATTTTTTAATTTTCTGATTTCCTGACAGAGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACGGTATGGCTGTACATTCTTTCTTCGTAGCCGATGCTTATACTCTGAATCTTTGGTTTATGTATATAAGGAGACTTATTGCCTTCAATGTGCATACTCTCTTAATCTCTTCAAAAAATGCTTTTTTTTGTACAATGATGTCTCGTATTTGAAGTGCATTTCATTGGCAACTGGAACACATTTCAGAGCTGTTTAGTTTTTTGTTCCGCAATATGTTGGGTCATGTTTTGATTTCTGTGTAATAGAAGGATAAATTATAATAGAGGATTAGTGTTCTTAAGACTAATAGAAGTGGGTTCTATTAAAGTTTAAGTGTACTAAAATTGTATTCAATATATTCAATCATGCAAACTGGAAAGTTCTCTGTGACAATGCAAATTGAAAAAAGGACTCAGCATTTTGTGACCCTGCATTAAATTGTTTTATGTGAATGCGGTCTGCTTTTTCCTGGTTGTGTTGGCATATATAGTTAAACATGCTGTACTACCTGATAACATAACATCCTTCTTGCGGCAATAAGCTAATAAGTAGTTCGACAAATCACCACTAGCTGTGCTAGAGCTCATATCTGATGTGGGAAATTTTGTGATTGGTACTGATTTAGTTGAAAGACTTGGGTCCTATCAATTTCAAGTTGTACAAATCTTTCATTAAAACTACATAAATTTTCAGGCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTCGTGAGTTTCTCGTGAATCTCTTATCCCCCCTCCCCCTTGCTCTCTGTTTTCTTTTTCGTTCAGTACTTTCAGTTGCCCTGCCCCCCCCCCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGACTTTTACGTGTATTTCTGATAAATAAAGCTCTCTGTTGTCTTTTTTGTTCTCTGCTTTCAGTTGCCCGTCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGGCTTTTACGTGTATTTCTGATAAAGAATGTTCTGTTAAGTGTAAACTTCCATCCCTTTAAAGAAAAGGATAAGGATTTCAGGGTATCTGCAGATTTTGTGATAGAGGGTTTTGCCAGGTGCATTTCAACAATAATATGGGTCAATCACTTAAAGTACACTACATTCAATATGCATTTTTATGGCATAGCATGGAAAGACCTTTCTAAATGAATTGTTGTTCCATTCTCATGTTTGGCCTGAAAAATGGAAGCTTCTTCTATGATATGGAAAAAATGCCAAGCACCGACTATTGAAATTGCTGCTCATTTGGTTTACAATTGTATTTCTTGTCTCTTTAATTTCAAAATGCCCAATATATAGTACATCCAGACTTTTTGCATATTTAACCAGCTTATGTAGAAAAGATTCCATATTCTACGCCAATAGATACATGACATCCATTAAGTTATCATTCTCAAAAAAAAAAGATTCATGACATCCATGTACTGAATCGTCAAAAGAGCCATGCTAAGAAAGCCAAGCTTATACTTGTTGGCCCATGCCGATCAGAGAAAACACTCCTATACTGTGTCTAGTGGGGAGCTTTTTCATCTCAAAGAATAAGCAGATCTTCATATTTTGCATTTTACATTACCTTGTAGAAAGAAGAAAAAAGATATTGTGCATTGCTTAAATTTATACTGCCAGGATAAAAAGGAAGTGATCAAGACCTGCTTACAGAATTCAACTAGCTATATAGTTGTATTTTAGTTGAATTATTTGTGCTGCTCTTTGGCAAACAGGATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACCCGTCCTGGTAAACTGAGTGATCGTTTTCCTCAGCCATATCCAAATGAAGCAGCTGCTAGATTTGCTAATGGGGGAGCCTACCCTCCAGATTTAAGTCTTATTACAAAAGTATTTCCGCCATTCTGTTTCTGTTTTTTTTAAAGAAAAATCTCCTTTCTGTTCCTATTTCAGTCGTTACTGTTATCTGCCCCATTTAGCTTTCATTCTGTTTCTCAGGCACGCCATAATGGTCAAAACTATGTGTTTGCTCTTCTTACTGGCTATCGTGATCCTCCTGCTGGTGTTTCGGTATGCATCTTTGTCCTTTGTGTATCTTAGACTCTTTAAGTTTTCAATCTTGAAGCCTTTATACCTTCTGCACTTTTGGTTTTTGGCTTCCCATATGATTTTTTTTCTTTTGATAACAAAGAAAATCCCTGAGTGGTAGAATGGGCCTTTTAGTAGAAATGTTTTTTTCCCTTTATTACATAGCTGGTTGTGTGGCCTGAGCAACTTTTTCAAGTGGAAGTAATTCTCATTCACGTTTCTCTCTAAACATTTGAATCCAAATGTTGTCTCTAATTTTTATTTTTTAAAAATTCTTTTTGTTATGTAACCTTGTGTTGTGGTAAAAAAAGGAAATTACTCCTAACATGTGCCACAAGAACATTGTGACACAGTGATTTCTTGTTTCCGACTGTAAACAAAGTAGGATAAGTCTCCAACCTTTATCTTGATGTATTTGACTCTGCAGCTGAGAGGACAGGAGGACAGGTTTCTGAACTGCTTTGACACTGATAGGCATCTTACTCTATGTAATCTTAAGCTGCAACTTGAATTTAAATCAACAATCCTACAGTACAAATTCATTAATTTAATCAAATCACTTCTGGAAATAGAGTAGTGAGAGGATCAGAGTATGTTGGATCACCTTTAGTTGCATAGGATCTCACATGAGAGTTTATGATCCTGTTTATTGGATTGTATTAGATAAAATTCAGACAGTAGATCTTAAGGTTTCACTCCGTCACACTGATCCTAGTATCCTACTAATTTGTCAGCTGTATGAAATTCCCATATTGTATTTTGTTATCTTGTATTGGCTGTGCAACAAATTCCAAGAGCAACAGGTGCAAATAAACCGTATAATATAATAATTAACCATGTATATTTGCTTGGATCTTGAAGTCCTACTATGATCCATCATGGGATCCTAAAATGATCCTATCTAGGATCTCCATTCTAGAAACATCTCATGGTGCATTTGTTGGTTTGCTTACTTAGCTTCCTGATTGTTGTGGTTGTTTGTGAGCATAATATAATCAAGTCAACCATTTTATTAGCTGAAGATAATTAGATTACTAGATTTTTTTGTCCACACAATACTGGCGTTCCTTGTCTCTTTCACTGATCTGTCAAGCTACAACCATACTATAGATTCGTGAAGGACTGCACTACAATCCTTACTTCCCTGGTGGAGCTAT</genome_strand>
        <mrna_strand>GTTTTGAAGACTAGACTGGTTTTCCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCG................................................................................................................................................................................................................................................................................AGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACCCGTCCTGGTAAACTGAGTGATCGTTTTCCTCAGCCATATCCAAATGAAGCAGCTGCTAGATTTGCTAATGGGGGAGCCTACCCTCCAGATTTAAGTCTTATTACAAAA............................................................................................................GCACGCCATAATGGTCAAAACTATGTGTTTGCTCTTCTTACTGGCTATCGTGATCCTCCTGCTGGTGTTTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCGTGAAGGACTGCACTACAATCCTTACTTCCCTGGTGGAGCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E318545" ref_strand="+" ref_description="SGN-E318545 [cTOB-10-J10]">
      <seq>cacggcatctccaattttatcatcctttgtttccaaaaaagctcaagaagaatttggttcttttggcatgaagtccttcagaacattagcactcattggagcgggtgtatctggacttctaggttttgcgacagtagcatctgctgatgaggctgaacacggattggaatgcccaagctatccttggcctcatgcaggcattcttagttcatacgatcatgcttcgattcgtcgtggtcaccaggtttatcaacaagtatgtgcatcttgtcattcaatgtcacttgtttcatatcgtgacttggtcggggtggcatatacagaggaagaagtaaaggctatggcagctgagattgaggtggcggatgggcctaatgatgagggtgaaatgtttacccgtcctggtaaactgagtgatcgttttcctcagccatatccaaatgaagcagctgctagatttgctaatgggggagcctaccctccagatttaagtcttattacaaaagcacgccataatggtcaaaactatgtgtttgctcttcttactggctatcgtgatcctcctgctggtgtttcgattcgtgaaggactgcactacaatccttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="26217" stop="22744"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25914" g_stop="25694" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="225" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25693" i_stop="24662" i_length="1032">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24661" g_stop="24382" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="505" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24381" i_stop="24274" i_length="108">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24273" g_stop="24202" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="577" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24201" i_stop="23074" i_length="1128">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.571" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23073" g_stop="23044" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="607" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E318545" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25914" e_stop="25694"/>
          <exon e_start="24661" e_stop="24382"/>
          <exon e_start="24273" e_stop="24202"/>
          <exon e_start="23073" e_stop="23044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTCGTGAGTTTCTCGTGAATCTCTTATCCCCCCTCCCCCTTGCTCTCTGTTTTCTTTTTCGTTCAGTACTTTCAGTTGCCCTGCCCCCCCCCCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGACTTTTACGTGTATTTCTGATAAATAAAGCTCTCTGTTGTCTTTTTTGTTCTCTGCTTTCAGTTGCCCGTCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGGCTTTTACGTGTATTTCTGATAAAGAATGTTCTGTTAAGTGTAAACTTCCATCCCTTTAAAGAAAAGGATAAGGATTTCAGGGTATCTGCAGATTTTGTGATAGAGGGTTTTGCCAGGTGCATTTCAACAATAATATGGGTCAATCACTTAAAGTACACTACATTCAATATGCATTTTTATGGCATAGCATGGAAAGACCTTTCTAAATGAATTGTTGTTCCATTCTCATGTTTGGCCTGAAAAATGGAAGCTTCTTCTATGATATGGAAAAAATGCCAAGCACCGACTATTGAAATTGCTGCTCATTTGGTTTACAATTGTATTTCTTGTCTCTTTAATTTCAAAATGCCCAATATATAGTACATCCAGACTTTTTGCATATTTAACCAGCTTATGTAGAAAAGATTCCATATTCTACGCCAATAGATACATGACATCCATTAAGTTATCATTCTCAAAAAAAAAAGATTCATGACATCCATGTACTGAATCGTCAAAAGAGCCATGCTAAGAAAGCCAAGCTTATACTTGTTGGCCCATGCCGATCAGAGAAAACACTCCTATACTGTGTCTAGTGGGGAGCTTTTTCATCTCAAAGAATAAGCAGATCTTCATATTTTGCATTTTACATTACCTTGTAGAAAGAAGAAAAAAGATATTGTGCATTGCTTAAATTTATACTGCCAGGATAAAAAGGAAGTGATCAAGACCTGCTTACAGAATTCAACTAGCTATATAGTTGTATTTTAGTTGAATTATTTGTGCTGCTCTTTGGCAAACAGGATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACCCGTCCTGGTAAACTGAGTGATCGTTTTCCTCAGCCATATCCAAATGAAGCAGCTGCTAGATTTGCTAATGGGGGAGCCTACCCTCCAGATTTAAGTCTTATTACAAAAGTATTTCCGCCATTCTGTTTCTGTTTTTTTTAAAGAAAAATCTCCTTTCTGTTCCTATTTCAGTCGTTACTGTTATCTGCCCCATTTAGCTTTCATTCTGTTTCTCAGGCACGCCATAATGGTCAAAACTATGTGTTTGCTCTTCTTACTGGCTATCGTGATCCTCCTGCTGGTGTTTCGGTATGCATCTTTGTCCTTTGTGTATCTTAGACTCTTTAAGTTTTCAATCTTGAAGCCTTTATACCTTCTGCACTTTTGGTTTTTGGCTTCCCATATGATTTTTTTTCTTTTGATAACAAAGAAAATCCCTGAGTGGTAGAATGGGCCTTTTAGTAGAAATGTTTTTTTCCCTTTATTACATAGCTGGTTGTGTGGCCTGAGCAACTTTTTCAAGTGGAAGTAATTCTCATTCACGTTTCTCTCTAAACATTTGAATCCAAATGTTGTCTCTAATTTTTATTTTTTAAAAATTCTTTTTGTTATGTAACCTTGTGTTGTGGTAAAAAAAGGAAATTACTCCTAACATGTGCCACAAGAACATTGTGACACAGTGATTTCTTGTTTCCGACTGTAAACAAAGTAGGATAAGTCTCCAACCTTTATCTTGATGTATTTGACTCTGCAGCTGAGAGGACAGGAGGACAGGTTTCTGAACTGCTTTGACACTGATAGGCATCTTACTCTATGTAATCTTAAGCTGCAACTTGAATTTAAATCAACAATCCTACAGTACAAATTCATTAATTTAATCAAATCACTTCTGGAAATAGAGTAGTGAGAGGATCAGAGTATGTTGGATCACCTTTAGTTGCATAGGATCTCACATGAGAGTTTATGATCCTGTTTATTGGATTGTATTAGATAAAATTCAGACAGTAGATCTTAAGGTTTCACTCCGTCACACTGATCCTAGTATCCTACTAATTTGTCAGCTGTATGAAATTCCCATATTGTATTTTGTTATCTTGTATTGGCTGTGCAACAAATTCCAAGAGCAACAGGTGCAAATAAACCGTATAATATAATAATTAACCATGTATATTTGCTTGGATCTTGAAGTCCTACTATGATCCATCATGGGATCCTAAAATGATCCTATCTAGGATCTCCATTCTAGAAACATCTCATGGTGCATTTGTTGGTTTGCTTACTTAGCTTCCTGATTGTTGTGGTTGTTTGTGAGCATAATATAATCAAGTCAACCATTTTATTAGCTGAAGATAATTAGATTACTAGATTTTTTTGTCCACACAATACTGGCGTTCCTTGTCTCTTTCACTGATCTGTCAAGCTACAACCATACTATAGATTCGTGAAGGACTGCACTACAATCCTTAC</genome_strand>
        <mrna_strand>GCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACCCGTCCTGGTAAACTGAGTGATCGTTTTCCTCAGCCATATCCAAATGAAGCAGCTGCTAGATTTGCTAATGGGGGAGCCTACCCTCCAGATTTAAGTCTTATTACAAAA............................................................................................................GCACGCCATAATGGTCAAAACTATGTGTTTGCTCTTCTTACTGGCTATCGTGATCCTCCTGCTGGTGTTTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCGTGAAGGACTGCACTACAATCCTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E264203" ref_strand="+" ref_description="SGN-E264203 [cLEG-64-P16]">
      <seq>ttttgaagactagactggttttccggatctctcaggcgctgtttgtcctatcgccgtcgatcaaccctctctacggtccttttccgagggcgtgactaacaatgttgggaggtagagcagtccatcgcttactaggcaggaaatttcaatctgaatccacggcatctccaattttatcatcctttgtttccaaaaaagctcaagaagaatttggttcttttggcatgaagtccttcagaacattagcactcattggagcgggtgtatctggacttctaggttttgcgacagtagcatctgctgatgaggctgaacacggattggaatgcccaagctatccttggcctcatgcaggcattcttagttcatacgatcatgcttcgattcgtcgtggtcaccaggtttatcaacaagtatgtgcatcttgtcattcaatgtcacttgtttcatatcgtgacttggtcggggtggcatatacagaggaagaagtaaaggctatggcagctgagattgaggtggcggatgggcctaatgatgagggtgaaatgtttacccgtcctggtaaactgagtgatcgttttcctcagccatatccaaatgaagcagctgctagatttgctaatgggggagcctaccctccagatttaagtcttattacaaaagcacgccataatggtcaaaactatgtgtttgctcttcttactggctatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="27316" stop="23925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27016" g_stop="26931" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26930" i_stop="26659" i_length="272">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26658" g_stop="26584" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="161" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26583" i_stop="25915" i_length="669">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25914" g_stop="25694" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="382" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25693" i_stop="24662" i_length="1032">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24661" g_stop="24382" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="662" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24381" i_stop="24274" i_length="108">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24273" g_stop="24225" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="663" r_stop="711" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E264203" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E264203" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27016" e_stop="26931"/>
          <exon e_start="26658" e_stop="26584"/>
          <exon e_start="25914" e_stop="25694"/>
          <exon e_start="24661" e_stop="24382"/>
          <exon e_start="24273" e_stop="24225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGAAGACTAGACTGGTTTTCCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCGGTGAGATATTATCCCTTCGTCTCTCCTCAATTTCTTCGAAGCTCTAGCTTGTTTCATCTTGAAAAGCACCCTAGGATTCCCTTACTTGTTGACGGTGTTTTGAGTAGAACGAATTTGCAGATCGCACAAAGTTGTTTGCTAGGGGAATAAGGAACTGTAGAATGAGTTAGGTTAAATAAATAGTCCGTTCTTAGGCGTATTGACTTAGGAGTAAAATAATCAAATCTGTTGTGTTTTGTTTCCTATTTTTTAATTTTCTGATTTCCTGACAGAGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACGGTATGGCTGTACATTCTTTCTTCGTAGCCGATGCTTATACTCTGAATCTTTGGTTTATGTATATAAGGAGACTTATTGCCTTCAATGTGCATACTCTCTTAATCTCTTCAAAAAATGCTTTTTTTTGTACAATGATGTCTCGTATTTGAAGTGCATTTCATTGGCAACTGGAACACATTTCAGAGCTGTTTAGTTTTTTGTTCCGCAATATGTTGGGTCATGTTTTGATTTCTGTGTAATAGAAGGATAAATTATAATAGAGGATTAGTGTTCTTAAGACTAATAGAAGTGGGTTCTATTAAAGTTTAAGTGTACTAAAATTGTATTCAATATATTCAATCATGCAAACTGGAAAGTTCTCTGTGACAATGCAAATTGAAAAAAGGACTCAGCATTTTGTGACCCTGCATTAAATTGTTTTATGTGAATGCGGTCTGCTTTTTCCTGGTTGTGTTGGCATATATAGTTAAACATGCTGTACTACCTGATAACATAACATCCTTCTTGCGGCAATAAGCTAATAAGTAGTTCGACAAATCACCACTAGCTGTGCTAGAGCTCATATCTGATGTGGGAAATTTTGTGATTGGTACTGATTTAGTTGAAAGACTTGGGTCCTATCAATTTCAAGTTGTACAAATCTTTCATTAAAACTACATAAATTTTCAGGCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTCGTGAGTTTCTCGTGAATCTCTTATCCCCCCTCCCCCTTGCTCTCTGTTTTCTTTTTCGTTCAGTACTTTCAGTTGCCCTGCCCCCCCCCCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGACTTTTACGTGTATTTCTGATAAATAAAGCTCTCTGTTGTCTTTTTTGTTCTCTGCTTTCAGTTGCCCGTCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGGCTTTTACGTGTATTTCTGATAAAGAATGTTCTGTTAAGTGTAAACTTCCATCCCTTTAAAGAAAAGGATAAGGATTTCAGGGTATCTGCAGATTTTGTGATAGAGGGTTTTGCCAGGTGCATTTCAACAATAATATGGGTCAATCACTTAAAGTACACTACATTCAATATGCATTTTTATGGCATAGCATGGAAAGACCTTTCTAAATGAATTGTTGTTCCATTCTCATGTTTGGCCTGAAAAATGGAAGCTTCTTCTATGATATGGAAAAAATGCCAAGCACCGACTATTGAAATTGCTGCTCATTTGGTTTACAATTGTATTTCTTGTCTCTTTAATTTCAAAATGCCCAATATATAGTACATCCAGACTTTTTGCATATTTAACCAGCTTATGTAGAAAAGATTCCATATTCTACGCCAATAGATACATGACATCCATTAAGTTATCATTCTCAAAAAAAAAAGATTCATGACATCCATGTACTGAATCGTCAAAAGAGCCATGCTAAGAAAGCCAAGCTTATACTTGTTGGCCCATGCCGATCAGAGAAAACACTCCTATACTGTGTCTAGTGGGGAGCTTTTTCATCTCAAAGAATAAGCAGATCTTCATATTTTGCATTTTACATTACCTTGTAGAAAGAAGAAAAAAGATATTGTGCATTGCTTAAATTTATACTGCCAGGATAAAAAGGAAGTGATCAAGACCTGCTTACAGAATTCAACTAGCTATATAGTTGTATTTTAGTTGAATTATTTGTGCTGCTCTTTGGCAAACAGGATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACCCGTCCTGGTAAACTGAGTGATCGTTTTCCTCAGCCATATCCAAATGAAGCAGCTGCTAGATTTGCTAATGGGGGAGCCTACCCTCCAGATTTAAGTCTTATTACAAAAGTATTTCCGCCATTCTGTTTCTGTTTTTTTTAAAGAAAAATCTCCTTTCTGTTCCTATTTCAGTCGTTACTGTTATCTGCCCCATTTAGCTTTCATTCTGTTTCTCAGGCACGCCATAATGGTCAAAACTATGTGTTTGCTCTTCTTACTGGCTATC</genome_strand>
        <mrna_strand>TTTTGAAGACTAGACTGGTTTTCCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCG................................................................................................................................................................................................................................................................................AGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACCCGTCCTGGTAAACTGAGTGATCGTTTTCCTCAGCCATATCCAAATGAAGCAGCTGCTAGATTTGCTAATGGGGGAGCCTACCCTCCAGATTTAAGTCTTATTACAAAA............................................................................................................GCACGCCATAATGGTCAAAACTATGTGTTTGCTCTTCTTACTGGCTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E248627" ref_strand="+" ref_description="SGN-E248627 [cLEF-58-E12]">
      <seq>tgaagactagactggttttccggatctctcaagcgctgtttgtcctatcgccgtcgatcaaccctctctacggtccttttccgagggcgtgactaacaatgttgggaggtagagcagtccatcgcttactaggcaggaaatttcaatctgaatccacggcatctccaattttatcatcctttgtttccaaaaaagctcaagaagaatttggttcttttggcatgaagtccttcagaacattagcactcattggagcgggtgtatctggacttctaggttttgcgacagtagcatctgctgatgaggctgaacacggattggaatgcccaagctatccttggcctcatgcaggcattcttagttcatacgatcatgcttcgattcgtcgtggtcaccaggtttatcaacaagtatgtgcatcttgtcattcaatgtcacttgtttcatatcgtgacttggtcggggtggcatatacagaggaagaagtaaaggctatggcagctgagattgaggtggcggatgggcctaatgatgagggtgaaatgtttacccgtcctggtaaactgagtgatcgttttcctcagccatatccaaatgaagcagctgctagatttgctaatgggggagcctaccctccagatttaagtcttattacaaaagcacgccataatggtcaaaactatgtgtttgctcttcttactggctatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="27313" stop="23925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27013" g_stop="26931" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26930" i_stop="26659" i_length="272">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26658" g_stop="26584" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="158" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26583" i_stop="25915" i_length="669">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25914" g_stop="25694" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="379" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25693" i_stop="24662" i_length="1032">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24661" g_stop="24382" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="659" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24381" i_stop="24274" i_length="108">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24273" g_stop="24225" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="660" r_stop="708" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E248627" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248627" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27013" e_stop="26931"/>
          <exon e_start="26658" e_stop="26584"/>
          <exon e_start="25914" e_stop="25694"/>
          <exon e_start="24661" e_stop="24382"/>
          <exon e_start="24273" e_stop="24225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGACTAGACTGGTTTTCCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCGGTGAGATATTATCCCTTCGTCTCTCCTCAATTTCTTCGAAGCTCTAGCTTGTTTCATCTTGAAAAGCACCCTAGGATTCCCTTACTTGTTGACGGTGTTTTGAGTAGAACGAATTTGCAGATCGCACAAAGTTGTTTGCTAGGGGAATAAGGAACTGTAGAATGAGTTAGGTTAAATAAATAGTCCGTTCTTAGGCGTATTGACTTAGGAGTAAAATAATCAAATCTGTTGTGTTTTGTTTCCTATTTTTTAATTTTCTGATTTCCTGACAGAGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACGGTATGGCTGTACATTCTTTCTTCGTAGCCGATGCTTATACTCTGAATCTTTGGTTTATGTATATAAGGAGACTTATTGCCTTCAATGTGCATACTCTCTTAATCTCTTCAAAAAATGCTTTTTTTTGTACAATGATGTCTCGTATTTGAAGTGCATTTCATTGGCAACTGGAACACATTTCAGAGCTGTTTAGTTTTTTGTTCCGCAATATGTTGGGTCATGTTTTGATTTCTGTGTAATAGAAGGATAAATTATAATAGAGGATTAGTGTTCTTAAGACTAATAGAAGTGGGTTCTATTAAAGTTTAAGTGTACTAAAATTGTATTCAATATATTCAATCATGCAAACTGGAAAGTTCTCTGTGACAATGCAAATTGAAAAAAGGACTCAGCATTTTGTGACCCTGCATTAAATTGTTTTATGTGAATGCGGTCTGCTTTTTCCTGGTTGTGTTGGCATATATAGTTAAACATGCTGTACTACCTGATAACATAACATCCTTCTTGCGGCAATAAGCTAATAAGTAGTTCGACAAATCACCACTAGCTGTGCTAGAGCTCATATCTGATGTGGGAAATTTTGTGATTGGTACTGATTTAGTTGAAAGACTTGGGTCCTATCAATTTCAAGTTGTACAAATCTTTCATTAAAACTACATAAATTTTCAGGCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTCGTGAGTTTCTCGTGAATCTCTTATCCCCCCTCCCCCTTGCTCTCTGTTTTCTTTTTCGTTCAGTACTTTCAGTTGCCCTGCCCCCCCCCCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGACTTTTACGTGTATTTCTGATAAATAAAGCTCTCTGTTGTCTTTTTTGTTCTCTGCTTTCAGTTGCCCGTCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGGCTTTTACGTGTATTTCTGATAAAGAATGTTCTGTTAAGTGTAAACTTCCATCCCTTTAAAGAAAAGGATAAGGATTTCAGGGTATCTGCAGATTTTGTGATAGAGGGTTTTGCCAGGTGCATTTCAACAATAATATGGGTCAATCACTTAAAGTACACTACATTCAATATGCATTTTTATGGCATAGCATGGAAAGACCTTTCTAAATGAATTGTTGTTCCATTCTCATGTTTGGCCTGAAAAATGGAAGCTTCTTCTATGATATGGAAAAAATGCCAAGCACCGACTATTGAAATTGCTGCTCATTTGGTTTACAATTGTATTTCTTGTCTCTTTAATTTCAAAATGCCCAATATATAGTACATCCAGACTTTTTGCATATTTAACCAGCTTATGTAGAAAAGATTCCATATTCTACGCCAATAGATACATGACATCCATTAAGTTATCATTCTCAAAAAAAAAAGATTCATGACATCCATGTACTGAATCGTCAAAAGAGCCATGCTAAGAAAGCCAAGCTTATACTTGTTGGCCCATGCCGATCAGAGAAAACACTCCTATACTGTGTCTAGTGGGGAGCTTTTTCATCTCAAAGAATAAGCAGATCTTCATATTTTGCATTTTACATTACCTTGTAGAAAGAAGAAAAAAGATATTGTGCATTGCTTAAATTTATACTGCCAGGATAAAAAGGAAGTGATCAAGACCTGCTTACAGAATTCAACTAGCTATATAGTTGTATTTTAGTTGAATTATTTGTGCTGCTCTTTGGCAAACAGGATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACCCGTCCTGGTAAACTGAGTGATCGTTTTCCTCAGCCATATCCAAATGAAGCAGCTGCTAGATTTGCTAATGGGGGAGCCTACCCTCCAGATTTAAGTCTTATTACAAAAGTATTTCCGCCATTCTGTTTCTGTTTTTTTTAAAGAAAAATCTCCTTTCTGTTCCTATTTCAGTCGTTACTGTTATCTGCCCCATTTAGCTTTCATTCTGTTTCTCAGGCACGCCATAATGGTCAAAACTATGTGTTTGCTCTTCTTACTGGCTATC</genome_strand>
        <mrna_strand>TGAAGACTAGACTGGTTTTCCGGATCTCTCAAGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCG................................................................................................................................................................................................................................................................................AGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACCCGTCCTGGTAAACTGAGTGATCGTTTTCCTCAGCCATATCCAAATGAAGCAGCTGCTAGATTTGCTAATGGGGGAGCCTACCCTCCAGATTTAAGTCTTATTACAAAA............................................................................................................GCACGCCATAATGGTCAAAACTATGTGTTTGCTCTTCTTACTGGCTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E318386" ref_strand="+" ref_description="SGN-E318386 [cTOA-29-F24]">
      <seq>tttgtcctatcggcggcgatcaaccctctctacgggccttttccgagggcgtgactaacaatgttgggaggtagagcagtccatcgcttactaggcaggaaatttcaatctgaatccacggcatctccaattttatcatcctttgtttccaaaaaagctcaagaagaatttggttcttttggcatgaagtccttcagaacattagcactcattggagcgggtgtatctggacttctaggttttgcgacagtagcatctgctgatgaggctgaacacggattggaatgcccaagctatccttggcctcatgcaggcattcttagttcatacgatcatgcttcgattcgtcgtggtcaccaggtttatcaacaagtatgtgcatcttgtcattcaatgtcacttgtttcatatcgcgacttggtcggggtggcatatacagaggaagaagtaaaggctatggcagctgatattgaggcggcggatgggcctaatgatgagggtgaaatgtttacccgtcctggtaaactgagtgatcgttttcctcagccatatccaaatgaagcagctgctagatttgctaatgggggagcctaccctccagatttaagtcttattacaatagcacgccataatggtcaaaactatgcgcttgctcttcttactggctatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="27275" stop="23925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26975" g_stop="26931" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26930" i_stop="26659" i_length="272">
            <donor d_prob="0.994" d_score="0.93"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26658" g_stop="26584" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="120" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26583" i_stop="25915" i_length="669">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25914" g_stop="25694" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="341" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25693" i_stop="24662" i_length="1032">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24661" g_stop="24382" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="621" r_length="280" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24381" i_stop="24274" i_length="108">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.922" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24273" g_stop="24225" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="622" r_stop="670" r_length="49" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E318386" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26975" e_stop="26931"/>
          <exon e_start="26658" e_stop="26584"/>
          <exon e_start="25914" e_stop="25694"/>
          <exon e_start="24661" e_stop="24382"/>
          <exon e_start="24273" e_stop="24225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCGGTGAGATATTATCCCTTCGTCTCTCCTCAATTTCTTCGAAGCTCTAGCTTGTTTCATCTTGAAAAGCACCCTAGGATTCCCTTACTTGTTGACGGTGTTTTGAGTAGAACGAATTTGCAGATCGCACAAAGTTGTTTGCTAGGGGAATAAGGAACTGTAGAATGAGTTAGGTTAAATAAATAGTCCGTTCTTAGGCGTATTGACTTAGGAGTAAAATAATCAAATCTGTTGTGTTTTGTTTCCTATTTTTTAATTTTCTGATTTCCTGACAGAGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACGGTATGGCTGTACATTCTTTCTTCGTAGCCGATGCTTATACTCTGAATCTTTGGTTTATGTATATAAGGAGACTTATTGCCTTCAATGTGCATACTCTCTTAATCTCTTCAAAAAATGCTTTTTTTTGTACAATGATGTCTCGTATTTGAAGTGCATTTCATTGGCAACTGGAACACATTTCAGAGCTGTTTAGTTTTTTGTTCCGCAATATGTTGGGTCATGTTTTGATTTCTGTGTAATAGAAGGATAAATTATAATAGAGGATTAGTGTTCTTAAGACTAATAGAAGTGGGTTCTATTAAAGTTTAAGTGTACTAAAATTGTATTCAATATATTCAATCATGCAAACTGGAAAGTTCTCTGTGACAATGCAAATTGAAAAAAGGACTCAGCATTTTGTGACCCTGCATTAAATTGTTTTATGTGAATGCGGTCTGCTTTTTCCTGGTTGTGTTGGCATATATAGTTAAACATGCTGTACTACCTGATAACATAACATCCTTCTTGCGGCAATAAGCTAATAAGTAGTTCGACAAATCACCACTAGCTGTGCTAGAGCTCATATCTGATGTGGGAAATTTTGTGATTGGTACTGATTTAGTTGAAAGACTTGGGTCCTATCAATTTCAAGTTGTACAAATCTTTCATTAAAACTACATAAATTTTCAGGCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTCGTGAGTTTCTCGTGAATCTCTTATCCCCCCTCCCCCTTGCTCTCTGTTTTCTTTTTCGTTCAGTACTTTCAGTTGCCCTGCCCCCCCCCCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGACTTTTACGTGTATTTCTGATAAATAAAGCTCTCTGTTGTCTTTTTTGTTCTCTGCTTTCAGTTGCCCGTCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGGCTTTTACGTGTATTTCTGATAAAGAATGTTCTGTTAAGTGTAAACTTCCATCCCTTTAAAGAAAAGGATAAGGATTTCAGGGTATCTGCAGATTTTGTGATAGAGGGTTTTGCCAGGTGCATTTCAACAATAATATGGGTCAATCACTTAAAGTACACTACATTCAATATGCATTTTTATGGCATAGCATGGAAAGACCTTTCTAAATGAATTGTTGTTCCATTCTCATGTTTGGCCTGAAAAATGGAAGCTTCTTCTATGATATGGAAAAAATGCCAAGCACCGACTATTGAAATTGCTGCTCATTTGGTTTACAATTGTATTTCTTGTCTCTTTAATTTCAAAATGCCCAATATATAGTACATCCAGACTTTTTGCATATTTAACCAGCTTATGTAGAAAAGATTCCATATTCTACGCCAATAGATACATGACATCCATTAAGTTATCATTCTCAAAAAAAAAAGATTCATGACATCCATGTACTGAATCGTCAAAAGAGCCATGCTAAGAAAGCCAAGCTTATACTTGTTGGCCCATGCCGATCAGAGAAAACACTCCTATACTGTGTCTAGTGGGGAGCTTTTTCATCTCAAAGAATAAGCAGATCTTCATATTTTGCATTTTACATTACCTTGTAGAAAGAAGAAAAAAGATATTGTGCATTGCTTAAATTTATACTGCCAGGATAAAAAGGAAGTGATCAAGACCTGCTTACAGAATTCAACTAGCTATATAGTTGTATTTTAGTTGAATTATTTGTGCTGCTCTTTGGCAAACAGGATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACCCGTCCTGGTAAACTGAGTGATCGTTTTCCTCAGCCATATCCAAATGAAGCAGCTGCTAGATTTGCTAATGGGGGAGCCTACCCTCCAGATTTAAGTCTTATTACAAAAGTATTTCCGCCATTCTGTTTCTGTTTTTTTTAAAGAAAAATCTCCTTTCTGTTCCTATTTCAGTCGTTACTGTTATCTGCCCCATTTAGCTTTCATTCTGTTTCTCAGGCACGCCATAATGGTCAAAACTATGTGTTTGCTCTTCTTACTGGCTATC</genome_strand>
        <mrna_strand>TTTGTCCTATCGGCGGCGATCAACCCTCTCTACGGGCCTTTTCCG................................................................................................................................................................................................................................................................................AGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGCGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGATATTGAGGCGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACCCGTCCTGGTAAACTGAGTGATCGTTTTCCTCAGCCATATCCAAATGAAGCAGCTGCTAGATTTGCTAATGGGGGAGCCTACCCTCCAGATTTAAGTCTTATTACAATA............................................................................................................GCACGCCATAATGGTCAAAACTATGCGCTTGCTCTTCTTACTGGCTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E326896" ref_strand="+" ref_description="SGN-E326896 [cTOC-18-G17]">
      <seq>tttgtcctatcgccgtcgatcaaccctctctacggtccttttccgagggcgtgactaacaatgttgggaggtagagcagtccatcgcttactaggcaggaaatttcaatctgaatccacggcatctccaattttatcatcctttgtttccaaaaaagctcaagaagaatttggttcttttggcatgaagtccttcagaacattagcactcattggagcgggtgtatctggacttctaggttttgcgacagtagcatctgctgatgaggctgaacacggattggaatgcccaagctatccttggcctcatgcaggcattcttagttcatacgatcatgcttcgattcgtcgtggtcaccaggtttatcaacaagtatgtgcatcttgtcattcaatgtcacttgtttcatatcgtgacttggtcggggtggcatatacagaggaagaagtaaaggctatggcagctgagattgaggtggcggatgggcctaatgatgagggtgaaatgtttacccgtcctggtaaactgagtgatcgttttcctcagccatatccaaatgaagcagctgctagatttgctaatgggggagcctaccctccagatttaagtcttattacaaaagcacgccataatggtcaaaactatgtggttgctcttcttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="27275" stop="23932"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26975" g_stop="26931" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26930" i_stop="26659" i_length="272">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26658" g_stop="26584" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="120" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26583" i_stop="25915" i_length="669">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25914" g_stop="25694" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="341" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25693" i_stop="24662" i_length="1032">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24661" g_stop="24382" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="621" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24381" i_stop="24274" i_length="108">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24273" g_stop="24232" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="622" r_stop="663" r_length="42" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E326896" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326896" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26975" e_stop="26931"/>
          <exon e_start="26658" e_stop="26584"/>
          <exon e_start="25914" e_stop="25694"/>
          <exon e_start="24661" e_stop="24382"/>
          <exon e_start="24273" e_stop="24232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCGGTGAGATATTATCCCTTCGTCTCTCCTCAATTTCTTCGAAGCTCTAGCTTGTTTCATCTTGAAAAGCACCCTAGGATTCCCTTACTTGTTGACGGTGTTTTGAGTAGAACGAATTTGCAGATCGCACAAAGTTGTTTGCTAGGGGAATAAGGAACTGTAGAATGAGTTAGGTTAAATAAATAGTCCGTTCTTAGGCGTATTGACTTAGGAGTAAAATAATCAAATCTGTTGTGTTTTGTTTCCTATTTTTTAATTTTCTGATTTCCTGACAGAGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACGGTATGGCTGTACATTCTTTCTTCGTAGCCGATGCTTATACTCTGAATCTTTGGTTTATGTATATAAGGAGACTTATTGCCTTCAATGTGCATACTCTCTTAATCTCTTCAAAAAATGCTTTTTTTTGTACAATGATGTCTCGTATTTGAAGTGCATTTCATTGGCAACTGGAACACATTTCAGAGCTGTTTAGTTTTTTGTTCCGCAATATGTTGGGTCATGTTTTGATTTCTGTGTAATAGAAGGATAAATTATAATAGAGGATTAGTGTTCTTAAGACTAATAGAAGTGGGTTCTATTAAAGTTTAAGTGTACTAAAATTGTATTCAATATATTCAATCATGCAAACTGGAAAGTTCTCTGTGACAATGCAAATTGAAAAAAGGACTCAGCATTTTGTGACCCTGCATTAAATTGTTTTATGTGAATGCGGTCTGCTTTTTCCTGGTTGTGTTGGCATATATAGTTAAACATGCTGTACTACCTGATAACATAACATCCTTCTTGCGGCAATAAGCTAATAAGTAGTTCGACAAATCACCACTAGCTGTGCTAGAGCTCATATCTGATGTGGGAAATTTTGTGATTGGTACTGATTTAGTTGAAAGACTTGGGTCCTATCAATTTCAAGTTGTACAAATCTTTCATTAAAACTACATAAATTTTCAGGCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTCGTGAGTTTCTCGTGAATCTCTTATCCCCCCTCCCCCTTGCTCTCTGTTTTCTTTTTCGTTCAGTACTTTCAGTTGCCCTGCCCCCCCCCCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGACTTTTACGTGTATTTCTGATAAATAAAGCTCTCTGTTGTCTTTTTTGTTCTCTGCTTTCAGTTGCCCGTCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGGCTTTTACGTGTATTTCTGATAAAGAATGTTCTGTTAAGTGTAAACTTCCATCCCTTTAAAGAAAAGGATAAGGATTTCAGGGTATCTGCAGATTTTGTGATAGAGGGTTTTGCCAGGTGCATTTCAACAATAATATGGGTCAATCACTTAAAGTACACTACATTCAATATGCATTTTTATGGCATAGCATGGAAAGACCTTTCTAAATGAATTGTTGTTCCATTCTCATGTTTGGCCTGAAAAATGGAAGCTTCTTCTATGATATGGAAAAAATGCCAAGCACCGACTATTGAAATTGCTGCTCATTTGGTTTACAATTGTATTTCTTGTCTCTTTAATTTCAAAATGCCCAATATATAGTACATCCAGACTTTTTGCATATTTAACCAGCTTATGTAGAAAAGATTCCATATTCTACGCCAATAGATACATGACATCCATTAAGTTATCATTCTCAAAAAAAAAAGATTCATGACATCCATGTACTGAATCGTCAAAAGAGCCATGCTAAGAAAGCCAAGCTTATACTTGTTGGCCCATGCCGATCAGAGAAAACACTCCTATACTGTGTCTAGTGGGGAGCTTTTTCATCTCAAAGAATAAGCAGATCTTCATATTTTGCATTTTACATTACCTTGTAGAAAGAAGAAAAAAGATATTGTGCATTGCTTAAATTTATACTGCCAGGATAAAAAGGAAGTGATCAAGACCTGCTTACAGAATTCAACTAGCTATATAGTTGTATTTTAGTTGAATTATTTGTGCTGCTCTTTGGCAAACAGGATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACCCGTCCTGGTAAACTGAGTGATCGTTTTCCTCAGCCATATCCAAATGAAGCAGCTGCTAGATTTGCTAATGGGGGAGCCTACCCTCCAGATTTAAGTCTTATTACAAAAGTATTTCCGCCATTCTGTTTCTGTTTTTTTTAAAGAAAAATCTCCTTTCTGTTCCTATTTCAGTCGTTACTGTTATCTGCCCCATTTAGCTTTCATTCTGTTTCTCAGGCACGCCATAATGGTCAAAACTATGTGTTTGCTCTTCTTACT</genome_strand>
        <mrna_strand>TTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCG................................................................................................................................................................................................................................................................................AGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACCCGTCCTGGTAAACTGAGTGATCGTTTTCCTCAGCCATATCCAAATGAAGCAGCTGCTAGATTTGCTAATGGGGGAGCCTACCCTCCAGATTTAAGTCTTATTACAAAA............................................................................................................GCACGCCATAATGGTCAAAACTATGTGGTTGCTCTTCTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E320618" ref_strand="+" ref_description="SGN-E320618 [cTOB-22-L2]">
      <seq>ttttccggatctctcaggcgctgtttgtcctatcgccgtcgatcaaccctctctacggtccttttccgagggcgtgactaacagtgttgggaggtagagcagtccatcgcttactaggcaggaaatttcaatctgaatccacggcatctccaattttatcatcgtttgtttccaaaaaagctcaagaagaatttggttcttttggcatgaagtccttcaaaacattaacactcattggagcgggtgtatctggacttctagggtttgcgacagtagcatctgctgatgaggctgaacacggattggaatgcccaagctatccttggcctcatgcaggcattcttagttcatacgatcatgcttcgattcgtcgtggtcaccaggtttatcaacaagtatgtgcatcttgtcattcaatgtcacttgtttcatatcgtgacttggtcggggtggcatatacagaggaagaagtgaaggctatggcagctgagattgaggtggcggatgggcctaatgatgagggtgaaatgtttacccgtcctggtagactgagtgatcgttttcctcagccatatccgaatgaagcggctgctagatatgctagtgagggagcctaccctccagatttaagtnctattacccaagcacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="27298" stop="24079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26998" g_stop="26931" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26930" i_stop="26659" i_length="272">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26658" g_stop="26584" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="143" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26583" i_stop="25915" i_length="669">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25914" g_stop="25694" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="364" r_length="221" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25693" i_stop="24662" i_length="1032">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24661" g_stop="24382" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="644" r_length="280" r_score="0.961"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24381" i_stop="24274" i_length="108">
            <donor d_prob="0.970" d_score="0.86"/>
            <acceptor a_prob="0.922" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24273" g_stop="24269" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="649" r_length="5" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E320618" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320618" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26998" e_stop="26931"/>
          <exon e_start="26658" e_stop="26584"/>
          <exon e_start="25914" e_stop="25694"/>
          <exon e_start="24661" e_stop="24382"/>
          <exon e_start="24273" e_stop="24269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCGGTGAGATATTATCCCTTCGTCTCTCCTCAATTTCTTCGAAGCTCTAGCTTGTTTCATCTTGAAAAGCACCCTAGGATTCCCTTACTTGTTGACGGTGTTTTGAGTAGAACGAATTTGCAGATCGCACAAAGTTGTTTGCTAGGGGAATAAGGAACTGTAGAATGAGTTAGGTTAAATAAATAGTCCGTTCTTAGGCGTATTGACTTAGGAGTAAAATAATCAAATCTGTTGTGTTTTGTTTCCTATTTTTTAATTTTCTGATTTCCTGACAGAGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACGGTATGGCTGTACATTCTTTCTTCGTAGCCGATGCTTATACTCTGAATCTTTGGTTTATGTATATAAGGAGACTTATTGCCTTCAATGTGCATACTCTCTTAATCTCTTCAAAAAATGCTTTTTTTTGTACAATGATGTCTCGTATTTGAAGTGCATTTCATTGGCAACTGGAACACATTTCAGAGCTGTTTAGTTTTTTGTTCCGCAATATGTTGGGTCATGTTTTGATTTCTGTGTAATAGAAGGATAAATTATAATAGAGGATTAGTGTTCTTAAGACTAATAGAAGTGGGTTCTATTAAAGTTTAAGTGTACTAAAATTGTATTCAATATATTCAATCATGCAAACTGGAAAGTTCTCTGTGACAATGCAAATTGAAAAAAGGACTCAGCATTTTGTGACCCTGCATTAAATTGTTTTATGTGAATGCGGTCTGCTTTTTCCTGGTTGTGTTGGCATATATAGTTAAACATGCTGTACTACCTGATAACATAACATCCTTCTTGCGGCAATAAGCTAATAAGTAGTTCGACAAATCACCACTAGCTGTGCTAGAGCTCATATCTGATGTGGGAAATTTTGTGATTGGTACTGATTTAGTTGAAAGACTTGGGTCCTATCAATTTCAAGTTGTACAAATCTTTCATTAAAACTACATAAATTTTCAGGCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTCGTGAGTTTCTCGTGAATCTCTTATCCCCCCTCCCCCTTGCTCTCTGTTTTCTTTTTCGTTCAGTACTTTCAGTTGCCCTGCCCCCCCCCCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGACTTTTACGTGTATTTCTGATAAATAAAGCTCTCTGTTGTCTTTTTTGTTCTCTGCTTTCAGTTGCCCGTCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGGCTTTTACGTGTATTTCTGATAAAGAATGTTCTGTTAAGTGTAAACTTCCATCCCTTTAAAGAAAAGGATAAGGATTTCAGGGTATCTGCAGATTTTGTGATAGAGGGTTTTGCCAGGTGCATTTCAACAATAATATGGGTCAATCACTTAAAGTACACTACATTCAATATGCATTTTTATGGCATAGCATGGAAAGACCTTTCTAAATGAATTGTTGTTCCATTCTCATGTTTGGCCTGAAAAATGGAAGCTTCTTCTATGATATGGAAAAAATGCCAAGCACCGACTATTGAAATTGCTGCTCATTTGGTTTACAATTGTATTTCTTGTCTCTTTAATTTCAAAATGCCCAATATATAGTACATCCAGACTTTTTGCATATTTAACCAGCTTATGTAGAAAAGATTCCATATTCTACGCCAATAGATACATGACATCCATTAAGTTATCATTCTCAAAAAAAAAAGATTCATGACATCCATGTACTGAATCGTCAAAAGAGCCATGCTAAGAAAGCCAAGCTTATACTTGTTGGCCCATGCCGATCAGAGAAAACACTCCTATACTGTGTCTAGTGGGGAGCTTTTTCATCTCAAAGAATAAGCAGATCTTCATATTTTGCATTTTACATTACCTTGTAGAAAGAAGAAAAAAGATATTGTGCATTGCTTAAATTTATACTGCCAGGATAAAAAGGAAGTGATCAAGACCTGCTTACAGAATTCAACTAGCTATATAGTTGTATTTTAGTTGAATTATTTGTGCTGCTCTTTGGCAAACAGGATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACCCGTCCTGGTAAACTGAGTGATCGTTTTCCTCAGCCATATCCAAATGAAGCAGCTGCTAGATTTGCTAATGGGGGAGCCTACCCTCCAGATTTAAGTCTTATTACAAAAGTATTTCCGCCATTCTGTTTCTGTTTTTTTTAAAGAAAAATCTCCTTTCTGTTCCTATTTCAGTCGTTACTGTTATCTGCCCCATTTAGCTTTCATTCTGTTTCTCAGGCACG</genome_strand>
        <mrna_strand>TTTTCCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCG................................................................................................................................................................................................................................................................................AGGGCGTGACTAACAGTGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCTCCAATTTTATCATCGTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAAAACATTAACACTCATTGGAGCGGGTGTATCTGGACTTCTAGGGTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTGAAGGCTATGGCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACCCGTCCTGGTAGACTGAGTGATCGTTTTCCTCAGCCATATCCGAATGAAGCGGCTGCTAGATATGCTAGTGAGGGAGCCTACCCTCCAGATTTAAGTNCTATTACCCAA............................................................................................................GCACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E374680" ref_strand="-" ref_description="SGN-E374680 [TUS-14-B8](-)">
      <seq>tctcaggcgctgtttgtcctatcgccgtcgatcaaccctctctacggtccttttccgagggcgtgactaacaatgttgggaggtagagcagtccatcgcttactaggcaggaaatttcaatctgaatccacggcatctccaattttatcatcctttgtttccaaaaaagctcaagaagaatttggttcttttggcatgaagtccttcagaacattagcactcattggagcgggtgtatctggacttctaggttttgcgacagtagcatctgctgatgaggctgaacacggattggaatgcccaagctatccttggcctcatgcaggcattcttagttcatacgatcatgcttcgattcgtcgtggtcaccaggtttatcaacaagtatgtgcatcttgtcattcaatgtcacttgtttcatatcgtgacttggtcggggtggcatatacagaggaagaagtaaaggctatggcagctgagattgaggtggcggatgggcctaatgatgagggtgaaatgtttacccgtcctggtaaactgagtgatcgttttcctcagccatatccaaatgaagcagctgctagatttgctaatgggggagcctaccctccagatttaagtcttattacaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="27287" stop="24081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26987" g_stop="26931" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26930" i_stop="26659" i_length="272">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26658" g_stop="26584" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="132" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26583" i_stop="25915" i_length="669">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25914" g_stop="25694" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="353" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25693" i_stop="24662" i_length="1032">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24661" g_stop="24382" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="633" r_length="280" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E374680" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374680" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="26987" e_stop="26931"/>
          <exon e_start="26658" e_stop="26584"/>
          <exon e_start="25914" e_stop="25694"/>
          <exon e_start="24661" e_stop="24382"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCGGTGAGATATTATCCCTTCGTCTCTCCTCAATTTCTTCGAAGCTCTAGCTTGTTTCATCTTGAAAAGCACCCTAGGATTCCCTTACTTGTTGACGGTGTTTTGAGTAGAACGAATTTGCAGATCGCACAAAGTTGTTTGCTAGGGGAATAAGGAACTGTAGAATGAGTTAGGTTAAATAAATAGTCCGTTCTTAGGCGTATTGACTTAGGAGTAAAATAATCAAATCTGTTGTGTTTTGTTTCCTATTTTTTAATTTTCTGATTTCCTGACAGAGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACGGTATGGCTGTACATTCTTTCTTCGTAGCCGATGCTTATACTCTGAATCTTTGGTTTATGTATATAAGGAGACTTATTGCCTTCAATGTGCATACTCTCTTAATCTCTTCAAAAAATGCTTTTTTTTGTACAATGATGTCTCGTATTTGAAGTGCATTTCATTGGCAACTGGAACACATTTCAGAGCTGTTTAGTTTTTTGTTCCGCAATATGTTGGGTCATGTTTTGATTTCTGTGTAATAGAAGGATAAATTATAATAGAGGATTAGTGTTCTTAAGACTAATAGAAGTGGGTTCTATTAAAGTTTAAGTGTACTAAAATTGTATTCAATATATTCAATCATGCAAACTGGAAAGTTCTCTGTGACAATGCAAATTGAAAAAAGGACTCAGCATTTTGTGACCCTGCATTAAATTGTTTTATGTGAATGCGGTCTGCTTTTTCCTGGTTGTGTTGGCATATATAGTTAAACATGCTGTACTACCTGATAACATAACATCCTTCTTGCGGCAATAAGCTAATAAGTAGTTCGACAAATCACCACTAGCTGTGCTAGAGCTCATATCTGATGTGGGAAATTTTGTGATTGGTACTGATTTAGTTGAAAGACTTGGGTCCTATCAATTTCAAGTTGTACAAATCTTTCATTAAAACTACATAAATTTTCAGGCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTCGTGAGTTTCTCGTGAATCTCTTATCCCCCCTCCCCCTTGCTCTCTGTTTTCTTTTTCGTTCAGTACTTTCAGTTGCCCTGCCCCCCCCCCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGACTTTTACGTGTATTTCTGATAAATAAAGCTCTCTGTTGTCTTTTTTGTTCTCTGCTTTCAGTTGCCCGTCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGGCTTTTACGTGTATTTCTGATAAAGAATGTTCTGTTAAGTGTAAACTTCCATCCCTTTAAAGAAAAGGATAAGGATTTCAGGGTATCTGCAGATTTTGTGATAGAGGGTTTTGCCAGGTGCATTTCAACAATAATATGGGTCAATCACTTAAAGTACACTACATTCAATATGCATTTTTATGGCATAGCATGGAAAGACCTTTCTAAATGAATTGTTGTTCCATTCTCATGTTTGGCCTGAAAAATGGAAGCTTCTTCTATGATATGGAAAAAATGCCAAGCACCGACTATTGAAATTGCTGCTCATTTGGTTTACAATTGTATTTCTTGTCTCTTTAATTTCAAAATGCCCAATATATAGTACATCCAGACTTTTTGCATATTTAACCAGCTTATGTAGAAAAGATTCCATATTCTACGCCAATAGATACATGACATCCATTAAGTTATCATTCTCAAAAAAAAAAGATTCATGACATCCATGTACTGAATCGTCAAAAGAGCCATGCTAAGAAAGCCAAGCTTATACTTGTTGGCCCATGCCGATCAGAGAAAACACTCCTATACTGTGTCTAGTGGGGAGCTTTTTCATCTCAAAGAATAAGCAGATCTTCATATTTTGCATTTTACATTACCTTGTAGAAAGAAGAAAAAAGATATTGTGCATTGCTTAAATTTATACTGCCAGGATAAAAAGGAAGTGATCAAGACCTGCTTACAGAATTCAACTAGCTATATAGTTGTATTTTAGTTGAATTATTTGTGCTGCTCTTTGGCAAACAGGATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACCCGTCCTGGTAAACTGAGTGATCGTTTTCCTCAGCCATATCCAAATGAAGCAGCTGCTAGATTTGCTAATGGGGGAGCCTACCCTCCAGATTTAAGTCTTATTACAAAA</genome_strand>
        <mrna_strand>TCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCG................................................................................................................................................................................................................................................................................AGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACCCGTCCTGGTAAACTGAGTGATCGTTTTCCTCAGCCATATCCAAATGAAGCAGCTGCTAGATTTGCTAATGGGGGAGCCTACCCTCCAGATTTAAGTCTTATTACAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E342974" ref_strand="+" ref_description="SGN-E342974 [cTOF-11-J12]">
      <seq>gagcaaaacctcctcctcttagaattttctgaatagttttgaagactagactggttttccggatctctcaggcgctgtttgtcctatcgccgtcgatcaaccctctctacggtccttttccgagggcgtgactaacaatgttgggaggtagagcagtccatcgcttactaggcaggaaatttcaatctgaatccacggcatctccaattttatcatcctttgtttccaaaaaagctcaagaagaatttggttcttttggcatgaagtccttcagaacattagcactcattggagcgggtgtatctggacttctaggttttgcgacagtagcatctgctgatgaggctgaacacggattggaatgcccaagctatccttggcctcatgcaggcattcttagttcatacgatcatgcttcgattcgtcgtggtcaccaggtttatcaacagntatgtgcatcttgtcattcaatgtcacttgtttcatatcgtgacttggtcggngtggcatatacagaggaagaagtaaaggctatggcagctgagattgaggtggcggatgggcctaatgatgagggtgaaatgtttacccgtcctggtaaactgagtgatcgttttcctcagccatatccaaatgaagcagctgctagatttgctaatgggggagcctaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="27352" stop="24107"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27052" g_stop="26931" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26930" i_stop="26659" i_length="272">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26658" g_stop="26584" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="197" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26583" i_stop="25915" i_length="669">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25914" g_stop="25694" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="418" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25693" i_stop="24662" i_length="1032">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24661" g_stop="24407" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="673" r_length="255" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E342974" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342974" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27052" e_stop="26931"/>
          <exon e_start="26658" e_stop="26584"/>
          <exon e_start="25914" e_stop="25694"/>
          <exon e_start="24661" e_stop="24407"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCAAAACCTCCTCCTCTTAGAATTTTCTGAATAGTTTTGAAGACTAGACTGGTTTTCCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCGGTGAGATATTATCCCTTCGTCTCTCCTCAATTTCTTCGAAGCTCTAGCTTGTTTCATCTTGAAAAGCACCCTAGGATTCCCTTACTTGTTGACGGTGTTTTGAGTAGAACGAATTTGCAGATCGCACAAAGTTGTTTGCTAGGGGAATAAGGAACTGTAGAATGAGTTAGGTTAAATAAATAGTCCGTTCTTAGGCGTATTGACTTAGGAGTAAAATAATCAAATCTGTTGTGTTTTGTTTCCTATTTTTTAATTTTCTGATTTCCTGACAGAGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACGGTATGGCTGTACATTCTTTCTTCGTAGCCGATGCTTATACTCTGAATCTTTGGTTTATGTATATAAGGAGACTTATTGCCTTCAATGTGCATACTCTCTTAATCTCTTCAAAAAATGCTTTTTTTTGTACAATGATGTCTCGTATTTGAAGTGCATTTCATTGGCAACTGGAACACATTTCAGAGCTGTTTAGTTTTTTGTTCCGCAATATGTTGGGTCATGTTTTGATTTCTGTGTAATAGAAGGATAAATTATAATAGAGGATTAGTGTTCTTAAGACTAATAGAAGTGGGTTCTATTAAAGTTTAAGTGTACTAAAATTGTATTCAATATATTCAATCATGCAAACTGGAAAGTTCTCTGTGACAATGCAAATTGAAAAAAGGACTCAGCATTTTGTGACCCTGCATTAAATTGTTTTATGTGAATGCGGTCTGCTTTTTCCTGGTTGTGTTGGCATATATAGTTAAACATGCTGTACTACCTGATAACATAACATCCTTCTTGCGGCAATAAGCTAATAAGTAGTTCGACAAATCACCACTAGCTGTGCTAGAGCTCATATCTGATGTGGGAAATTTTGTGATTGGTACTGATTTAGTTGAAAGACTTGGGTCCTATCAATTTCAAGTTGTACAAATCTTTCATTAAAACTACATAAATTTTCAGGCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTCGTGAGTTTCTCGTGAATCTCTTATCCCCCCTCCCCCTTGCTCTCTGTTTTCTTTTTCGTTCAGTACTTTCAGTTGCCCTGCCCCCCCCCCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGACTTTTACGTGTATTTCTGATAAATAAAGCTCTCTGTTGTCTTTTTTGTTCTCTGCTTTCAGTTGCCCGTCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGGCTTTTACGTGTATTTCTGATAAAGAATGTTCTGTTAAGTGTAAACTTCCATCCCTTTAAAGAAAAGGATAAGGATTTCAGGGTATCTGCAGATTTTGTGATAGAGGGTTTTGCCAGGTGCATTTCAACAATAATATGGGTCAATCACTTAAAGTACACTACATTCAATATGCATTTTTATGGCATAGCATGGAAAGACCTTTCTAAATGAATTGTTGTTCCATTCTCATGTTTGGCCTGAAAAATGGAAGCTTCTTCTATGATATGGAAAAAATGCCAAGCACCGACTATTGAAATTGCTGCTCATTTGGTTTACAATTGTATTTCTTGTCTCTTTAATTTCAAAATGCCCAATATATAGTACATCCAGACTTTTTGCATATTTAACCAGCTTATGTAGAAAAGATTCCATATTCTACGCCAATAGATACATGACATCCATTAAGTTATCATTCTCAAAAAAAAAAGATTCATGACATCCATGTACTGAATCGTCAAAAGAGCCATGCTAAGAAAGCCAAGCTTATACTTGTTGGCCCATGCCGATCAGAGAAAACACTCCTATACTGTGTCTAGTGGGGAGCTTTTTCATCTCAAAGAATAAGCAGATCTTCATATTTTGCATTTTACATTACCTTGTAGAAAGAAGAAAAAAGATATTGTGCATTGCTTAAATTTATACTGCCAGGATAAAAAGGAAGTGATCAAGACCTGCTTACAGAATTCAACTAGCTATATAGTTGTATTTTAGTTGAATTATTTGTGCTGCTCTTTGGCAAACAGGATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACCCGTCCTGGTAAACTGAGTGATCGTTTTCCTCAGCCATATCCAAATGAAGCAGCTGCTAGATTTGCTAATGGGGGAGCCTACCC</genome_strand>
        <mrna_strand>GAGCAAAACCTCCTCCTCTTAGAATTTTCTGAATAGTTTTGAAGACTAGACTGGTTTTCCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCG................................................................................................................................................................................................................................................................................AGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCGTCGTGGTCACCAGGTTTATCAACAGNTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGNGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACCCGTCCTGGTAAACTGAGTGATCGTTTTCCTCAGCCATATCCAAATGAAGCAGCTGCTAGATTTGCTAATGGGGGAGCCTACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E316764" ref_strand="+" ref_description="SGN-E316764 [cTOB-6-C15]">
      <seq>ttttccggatctctcaggcgctgtttgtcctatcgccgtcgatcaaccctctctacggtccttttccgagggcgtgactaacaatgttgggaggtagagcagtccatcgcttactaggcaggaaatttcaatctgaatccacggcatctccaattttatcatcctttgtttccaaaaaagctcaagaagaatttggttcttttggcatgaagtccttcagaacattagcactcattggagcgggtgtatctggacttctaggttttgcgacagtagcatctgctgatgaggctgaacacggattggaatgcccaagctatccttggcctcatgcaggcattcttagttcatacgatcatgcttcgattcgtcgtggtcaccaggtttatcaacaagtatgtgcatcttgtcattcaatgtcacttgtttcatatcgtgacttggtcggggtggcatatacagaggaagaagtaaaggctatggcagctgagattgaggtggcggatgggcctaatgatgagggtgaaatgtttacccgtcctggtaaactgagtgatcgttttcctcagccatatccaaatgaagcagctgctagatttgctaatgggggagccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="27298" stop="24110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26998" g_stop="26931" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26930" i_stop="26659" i_length="272">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26658" g_stop="26584" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="143" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26583" i_stop="25915" i_length="669">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25914" g_stop="25694" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="364" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25693" i_stop="24662" i_length="1032">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24661" g_stop="24410" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="616" r_length="252" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E316764" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26998" e_stop="26931"/>
          <exon e_start="26658" e_stop="26584"/>
          <exon e_start="25914" e_stop="25694"/>
          <exon e_start="24661" e_stop="24410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCGGTGAGATATTATCCCTTCGTCTCTCCTCAATTTCTTCGAAGCTCTAGCTTGTTTCATCTTGAAAAGCACCCTAGGATTCCCTTACTTGTTGACGGTGTTTTGAGTAGAACGAATTTGCAGATCGCACAAAGTTGTTTGCTAGGGGAATAAGGAACTGTAGAATGAGTTAGGTTAAATAAATAGTCCGTTCTTAGGCGTATTGACTTAGGAGTAAAATAATCAAATCTGTTGTGTTTTGTTTCCTATTTTTTAATTTTCTGATTTCCTGACAGAGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACGGTATGGCTGTACATTCTTTCTTCGTAGCCGATGCTTATACTCTGAATCTTTGGTTTATGTATATAAGGAGACTTATTGCCTTCAATGTGCATACTCTCTTAATCTCTTCAAAAAATGCTTTTTTTTGTACAATGATGTCTCGTATTTGAAGTGCATTTCATTGGCAACTGGAACACATTTCAGAGCTGTTTAGTTTTTTGTTCCGCAATATGTTGGGTCATGTTTTGATTTCTGTGTAATAGAAGGATAAATTATAATAGAGGATTAGTGTTCTTAAGACTAATAGAAGTGGGTTCTATTAAAGTTTAAGTGTACTAAAATTGTATTCAATATATTCAATCATGCAAACTGGAAAGTTCTCTGTGACAATGCAAATTGAAAAAAGGACTCAGCATTTTGTGACCCTGCATTAAATTGTTTTATGTGAATGCGGTCTGCTTTTTCCTGGTTGTGTTGGCATATATAGTTAAACATGCTGTACTACCTGATAACATAACATCCTTCTTGCGGCAATAAGCTAATAAGTAGTTCGACAAATCACCACTAGCTGTGCTAGAGCTCATATCTGATGTGGGAAATTTTGTGATTGGTACTGATTTAGTTGAAAGACTTGGGTCCTATCAATTTCAAGTTGTACAAATCTTTCATTAAAACTACATAAATTTTCAGGCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTCGTGAGTTTCTCGTGAATCTCTTATCCCCCCTCCCCCTTGCTCTCTGTTTTCTTTTTCGTTCAGTACTTTCAGTTGCCCTGCCCCCCCCCCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGACTTTTACGTGTATTTCTGATAAATAAAGCTCTCTGTTGTCTTTTTTGTTCTCTGCTTTCAGTTGCCCGTCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGGCTTTTACGTGTATTTCTGATAAAGAATGTTCTGTTAAGTGTAAACTTCCATCCCTTTAAAGAAAAGGATAAGGATTTCAGGGTATCTGCAGATTTTGTGATAGAGGGTTTTGCCAGGTGCATTTCAACAATAATATGGGTCAATCACTTAAAGTACACTACATTCAATATGCATTTTTATGGCATAGCATGGAAAGACCTTTCTAAATGAATTGTTGTTCCATTCTCATGTTTGGCCTGAAAAATGGAAGCTTCTTCTATGATATGGAAAAAATGCCAAGCACCGACTATTGAAATTGCTGCTCATTTGGTTTACAATTGTATTTCTTGTCTCTTTAATTTCAAAATGCCCAATATATAGTACATCCAGACTTTTTGCATATTTAACCAGCTTATGTAGAAAAGATTCCATATTCTACGCCAATAGATACATGACATCCATTAAGTTATCATTCTCAAAAAAAAAAGATTCATGACATCCATGTACTGAATCGTCAAAAGAGCCATGCTAAGAAAGCCAAGCTTATACTTGTTGGCCCATGCCGATCAGAGAAAACACTCCTATACTGTGTCTAGTGGGGAGCTTTTTCATCTCAAAGAATAAGCAGATCTTCATATTTTGCATTTTACATTACCTTGTAGAAAGAAGAAAAAAGATATTGTGCATTGCTTAAATTTATACTGCCAGGATAAAAAGGAAGTGATCAAGACCTGCTTACAGAATTCAACTAGCTATATAGTTGTATTTTAGTTGAATTATTTGTGCTGCTCTTTGGCAAACAGGATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACCCGTCCTGGTAAACTGAGTGATCGTTTTCCTCAGCCATATCCAAATGAAGCAGCTGCTAGATTTGCTAATGGGGGAGCCTA</genome_strand>
        <mrna_strand>TTTTCCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCG................................................................................................................................................................................................................................................................................AGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACCCGTCCTGGTAAACTGAGTGATCGTTTTCCTCAGCCATATCCAAATGAAGCAGCTGCTAGATTTGCTAATGGGGGAGCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E320616" ref_strand="+" ref_description="SGN-E320616 [cTOB-22-J2]">
      <seq>ttttccggatctctcaggcgctgtttgtcctatcgccgtcgatcaaccctctctacggtccttttccgagggcgtgactaacaatgttgggaggtagagcagtccatcgcttactaggcaggaaatttcaatctgaatccacggcatctccaattttatcatcctttgtttccaaaaaagctcaagaagaatttggttcttttggcatgaagtccttcagaacattagcactcattggagcgggtgtatctggacttctagggtttgcgacagtagcatctgctgatgaggctgaacacggattggaatgcccaagctatccttggcctcatgcaggcattcttagttcatacgatcatgcttcgattcgtcgtggtcaccaggtttatcaacaagtatgtgcatcttgtcattcaatgtcacttgtttcatatcgtgacttggtcggggtggcatatacagaggaagaagtgaaggctatggcagctgagattgaggtggcggatgggcctaatgatgagggtgaaatgtttacccgtcctggtagactgagtgatcgttttcctcagccatatccaaatgaagcagctgctagatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="27298" stop="24126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26998" g_stop="26931" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26930" i_stop="26659" i_length="272">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26658" g_stop="26584" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="143" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26583" i_stop="25915" i_length="669">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25914" g_stop="25694" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="364" r_length="221" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25693" i_stop="24662" i_length="1032">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24661" g_stop="24426" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="600" r_length="236" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E320616" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320616" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26998" e_stop="26931"/>
          <exon e_start="26658" e_stop="26584"/>
          <exon e_start="25914" e_stop="25694"/>
          <exon e_start="24661" e_stop="24426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCGGTGAGATATTATCCCTTCGTCTCTCCTCAATTTCTTCGAAGCTCTAGCTTGTTTCATCTTGAAAAGCACCCTAGGATTCCCTTACTTGTTGACGGTGTTTTGAGTAGAACGAATTTGCAGATCGCACAAAGTTGTTTGCTAGGGGAATAAGGAACTGTAGAATGAGTTAGGTTAAATAAATAGTCCGTTCTTAGGCGTATTGACTTAGGAGTAAAATAATCAAATCTGTTGTGTTTTGTTTCCTATTTTTTAATTTTCTGATTTCCTGACAGAGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACGGTATGGCTGTACATTCTTTCTTCGTAGCCGATGCTTATACTCTGAATCTTTGGTTTATGTATATAAGGAGACTTATTGCCTTCAATGTGCATACTCTCTTAATCTCTTCAAAAAATGCTTTTTTTTGTACAATGATGTCTCGTATTTGAAGTGCATTTCATTGGCAACTGGAACACATTTCAGAGCTGTTTAGTTTTTTGTTCCGCAATATGTTGGGTCATGTTTTGATTTCTGTGTAATAGAAGGATAAATTATAATAGAGGATTAGTGTTCTTAAGACTAATAGAAGTGGGTTCTATTAAAGTTTAAGTGTACTAAAATTGTATTCAATATATTCAATCATGCAAACTGGAAAGTTCTCTGTGACAATGCAAATTGAAAAAAGGACTCAGCATTTTGTGACCCTGCATTAAATTGTTTTATGTGAATGCGGTCTGCTTTTTCCTGGTTGTGTTGGCATATATAGTTAAACATGCTGTACTACCTGATAACATAACATCCTTCTTGCGGCAATAAGCTAATAAGTAGTTCGACAAATCACCACTAGCTGTGCTAGAGCTCATATCTGATGTGGGAAATTTTGTGATTGGTACTGATTTAGTTGAAAGACTTGGGTCCTATCAATTTCAAGTTGTACAAATCTTTCATTAAAACTACATAAATTTTCAGGCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTCGTGAGTTTCTCGTGAATCTCTTATCCCCCCTCCCCCTTGCTCTCTGTTTTCTTTTTCGTTCAGTACTTTCAGTTGCCCTGCCCCCCCCCCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGACTTTTACGTGTATTTCTGATAAATAAAGCTCTCTGTTGTCTTTTTTGTTCTCTGCTTTCAGTTGCCCGTCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGGCTTTTACGTGTATTTCTGATAAAGAATGTTCTGTTAAGTGTAAACTTCCATCCCTTTAAAGAAAAGGATAAGGATTTCAGGGTATCTGCAGATTTTGTGATAGAGGGTTTTGCCAGGTGCATTTCAACAATAATATGGGTCAATCACTTAAAGTACACTACATTCAATATGCATTTTTATGGCATAGCATGGAAAGACCTTTCTAAATGAATTGTTGTTCCATTCTCATGTTTGGCCTGAAAAATGGAAGCTTCTTCTATGATATGGAAAAAATGCCAAGCACCGACTATTGAAATTGCTGCTCATTTGGTTTACAATTGTATTTCTTGTCTCTTTAATTTCAAAATGCCCAATATATAGTACATCCAGACTTTTTGCATATTTAACCAGCTTATGTAGAAAAGATTCCATATTCTACGCCAATAGATACATGACATCCATTAAGTTATCATTCTCAAAAAAAAAAGATTCATGACATCCATGTACTGAATCGTCAAAAGAGCCATGCTAAGAAAGCCAAGCTTATACTTGTTGGCCCATGCCGATCAGAGAAAACACTCCTATACTGTGTCTAGTGGGGAGCTTTTTCATCTCAAAGAATAAGCAGATCTTCATATTTTGCATTTTACATTACCTTGTAGAAAGAAGAAAAAAGATATTGTGCATTGCTTAAATTTATACTGCCAGGATAAAAAGGAAGTGATCAAGACCTGCTTACAGAATTCAACTAGCTATATAGTTGTATTTTAGTTGAATTATTTGTGCTGCTCTTTGGCAAACAGGATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACCCGTCCTGGTAAACTGAGTGATCGTTTTCCTCAGCCATATCCAAATGAAGCAGCTGCTAGATTTG</genome_strand>
        <mrna_strand>TTTTCCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCG................................................................................................................................................................................................................................................................................AGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGGTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTGAAGGCTATGGCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACCCGTCCTGGTAGACTGAGTGATCGTTTTCCTCAGCCATATCCAAATGAAGCAGCTGCTAGATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E307360" ref_strand="+" ref_description="SGN-E307360 [cLEY-12-A5]">
      <seq>ttttccggatctctcaggcgctgtttgtcctatcgccgtggatcaaccctctctacggtccttttccgagggcgtgactaacaatgttgggaggtagagcagtccatcgcttactaggcaggaaatttcaatctgaatccacggcatctccaattttatcatcctttgtttccaaaaaagctcaagaagaatttggttcttttggcatgaagtccttcagaacattagcactcattggagcgggtgtatctggacttctaggttttgcgacagtagcatctgctgatgaggctgaacacggattggaatgcccaagctatccttggcctcatgcaggcattcttagttcatacgatcatgcttcgattcgtcgtggtcaccaggtttatcaacaagtatgtgcatcttgtcattcaatgtcacttgtttcatatcgtgacttggtcggggtggcatatacagaggaagaagtaaaggctatggcagctgagattgaggtggcggatgggcctaatgatgagggtgaaatgtttacccgtcctggtaaactgagtgatcgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="27298" stop="24164"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26998" g_stop="26931" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26930" i_stop="26659" i_length="272">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26658" g_stop="26584" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="143" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26583" i_stop="25915" i_length="669">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25914" g_stop="25694" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="364" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25693" i_stop="24662" i_length="1032">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24661" g_stop="24464" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="562" r_length="198" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E307360" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307360" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26998" e_stop="26931"/>
          <exon e_start="26658" e_stop="26584"/>
          <exon e_start="25914" e_stop="25694"/>
          <exon e_start="24661" e_stop="24464"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCGGTGAGATATTATCCCTTCGTCTCTCCTCAATTTCTTCGAAGCTCTAGCTTGTTTCATCTTGAAAAGCACCCTAGGATTCCCTTACTTGTTGACGGTGTTTTGAGTAGAACGAATTTGCAGATCGCACAAAGTTGTTTGCTAGGGGAATAAGGAACTGTAGAATGAGTTAGGTTAAATAAATAGTCCGTTCTTAGGCGTATTGACTTAGGAGTAAAATAATCAAATCTGTTGTGTTTTGTTTCCTATTTTTTAATTTTCTGATTTCCTGACAGAGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACGGTATGGCTGTACATTCTTTCTTCGTAGCCGATGCTTATACTCTGAATCTTTGGTTTATGTATATAAGGAGACTTATTGCCTTCAATGTGCATACTCTCTTAATCTCTTCAAAAAATGCTTTTTTTTGTACAATGATGTCTCGTATTTGAAGTGCATTTCATTGGCAACTGGAACACATTTCAGAGCTGTTTAGTTTTTTGTTCCGCAATATGTTGGGTCATGTTTTGATTTCTGTGTAATAGAAGGATAAATTATAATAGAGGATTAGTGTTCTTAAGACTAATAGAAGTGGGTTCTATTAAAGTTTAAGTGTACTAAAATTGTATTCAATATATTCAATCATGCAAACTGGAAAGTTCTCTGTGACAATGCAAATTGAAAAAAGGACTCAGCATTTTGTGACCCTGCATTAAATTGTTTTATGTGAATGCGGTCTGCTTTTTCCTGGTTGTGTTGGCATATATAGTTAAACATGCTGTACTACCTGATAACATAACATCCTTCTTGCGGCAATAAGCTAATAAGTAGTTCGACAAATCACCACTAGCTGTGCTAGAGCTCATATCTGATGTGGGAAATTTTGTGATTGGTACTGATTTAGTTGAAAGACTTGGGTCCTATCAATTTCAAGTTGTACAAATCTTTCATTAAAACTACATAAATTTTCAGGCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTCGTGAGTTTCTCGTGAATCTCTTATCCCCCCTCCCCCTTGCTCTCTGTTTTCTTTTTCGTTCAGTACTTTCAGTTGCCCTGCCCCCCCCCCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGACTTTTACGTGTATTTCTGATAAATAAAGCTCTCTGTTGTCTTTTTTGTTCTCTGCTTTCAGTTGCCCGTCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGGCTTTTACGTGTATTTCTGATAAAGAATGTTCTGTTAAGTGTAAACTTCCATCCCTTTAAAGAAAAGGATAAGGATTTCAGGGTATCTGCAGATTTTGTGATAGAGGGTTTTGCCAGGTGCATTTCAACAATAATATGGGTCAATCACTTAAAGTACACTACATTCAATATGCATTTTTATGGCATAGCATGGAAAGACCTTTCTAAATGAATTGTTGTTCCATTCTCATGTTTGGCCTGAAAAATGGAAGCTTCTTCTATGATATGGAAAAAATGCCAAGCACCGACTATTGAAATTGCTGCTCATTTGGTTTACAATTGTATTTCTTGTCTCTTTAATTTCAAAATGCCCAATATATAGTACATCCAGACTTTTTGCATATTTAACCAGCTTATGTAGAAAAGATTCCATATTCTACGCCAATAGATACATGACATCCATTAAGTTATCATTCTCAAAAAAAAAAGATTCATGACATCCATGTACTGAATCGTCAAAAGAGCCATGCTAAGAAAGCCAAGCTTATACTTGTTGGCCCATGCCGATCAGAGAAAACACTCCTATACTGTGTCTAGTGGGGAGCTTTTTCATCTCAAAGAATAAGCAGATCTTCATATTTTGCATTTTACATTACCTTGTAGAAAGAAGAAAAAAGATATTGTGCATTGCTTAAATTTATACTGCCAGGATAAAAAGGAAGTGATCAAGACCTGCTTACAGAATTCAACTAGCTATATAGTTGTATTTTAGTTGAATTATTTGTGCTGCTCTTTGGCAAACAGGATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACCCGTCCTGGTAAACTGAGTGATCGTTT</genome_strand>
        <mrna_strand>TTTTCCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTGGATCAACCCTCTCTACGGTCCTTTTCCG................................................................................................................................................................................................................................................................................AGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACCCGTCCTGGTAAACTGAGTGATCGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E245241" ref_strand="+" ref_description="SGN-E245241 [cLEF-44-H1]">
      <seq>tttgaagactagactggttttccggatctctcaggcgctgtttgtgctatcgccgtcgatcaaccctctctacggtccttttccgagggcgtgactaacaatgttgggaggtagagcagtccatcgcttactaggcaggaaatttcaatctgaatccacggcatctccaattttatcatcctttgtttccaaaaaagctcaagaagaatttggttcttttggcatgaagtccttcagaacattagcactcattggagcgggtgtatctggacttctaggttttgcgacagtagcatctgctgatgaggctgaacacggattggaatgcccaagctatccttggcctcatgcaggcattcttagttcatacgatcatgcttcgattcgtcgtggtcaccaggtttatcaacaagtatgtgcatcttgtcattcaatgtcacttgtttcatatcgtgacttggtcggggtggcatatacagaggaagaagtaaaggctatggcagctgagattgaggtggcggatgggcctaatgatgagggtgaaatgtttacccgtcctggtaaactgagtgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="27315" stop="24168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27015" g_stop="26931" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26930" i_stop="26659" i_length="272">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26658" g_stop="26584" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="160" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26583" i_stop="25915" i_length="669">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25914" g_stop="25694" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="381" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25693" i_stop="24662" i_length="1032">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24661" g_stop="24468" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="575" r_length="194" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E245241" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245241" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27015" e_stop="26931"/>
          <exon e_start="26658" e_stop="26584"/>
          <exon e_start="25914" e_stop="25694"/>
          <exon e_start="24661" e_stop="24468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAAGACTAGACTGGTTTTCCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCGGTGAGATATTATCCCTTCGTCTCTCCTCAATTTCTTCGAAGCTCTAGCTTGTTTCATCTTGAAAAGCACCCTAGGATTCCCTTACTTGTTGACGGTGTTTTGAGTAGAACGAATTTGCAGATCGCACAAAGTTGTTTGCTAGGGGAATAAGGAACTGTAGAATGAGTTAGGTTAAATAAATAGTCCGTTCTTAGGCGTATTGACTTAGGAGTAAAATAATCAAATCTGTTGTGTTTTGTTTCCTATTTTTTAATTTTCTGATTTCCTGACAGAGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACGGTATGGCTGTACATTCTTTCTTCGTAGCCGATGCTTATACTCTGAATCTTTGGTTTATGTATATAAGGAGACTTATTGCCTTCAATGTGCATACTCTCTTAATCTCTTCAAAAAATGCTTTTTTTTGTACAATGATGTCTCGTATTTGAAGTGCATTTCATTGGCAACTGGAACACATTTCAGAGCTGTTTAGTTTTTTGTTCCGCAATATGTTGGGTCATGTTTTGATTTCTGTGTAATAGAAGGATAAATTATAATAGAGGATTAGTGTTCTTAAGACTAATAGAAGTGGGTTCTATTAAAGTTTAAGTGTACTAAAATTGTATTCAATATATTCAATCATGCAAACTGGAAAGTTCTCTGTGACAATGCAAATTGAAAAAAGGACTCAGCATTTTGTGACCCTGCATTAAATTGTTTTATGTGAATGCGGTCTGCTTTTTCCTGGTTGTGTTGGCATATATAGTTAAACATGCTGTACTACCTGATAACATAACATCCTTCTTGCGGCAATAAGCTAATAAGTAGTTCGACAAATCACCACTAGCTGTGCTAGAGCTCATATCTGATGTGGGAAATTTTGTGATTGGTACTGATTTAGTTGAAAGACTTGGGTCCTATCAATTTCAAGTTGTACAAATCTTTCATTAAAACTACATAAATTTTCAGGCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTCGTGAGTTTCTCGTGAATCTCTTATCCCCCCTCCCCCTTGCTCTCTGTTTTCTTTTTCGTTCAGTACTTTCAGTTGCCCTGCCCCCCCCCCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGACTTTTACGTGTATTTCTGATAAATAAAGCTCTCTGTTGTCTTTTTTGTTCTCTGCTTTCAGTTGCCCGTCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGGCTTTTACGTGTATTTCTGATAAAGAATGTTCTGTTAAGTGTAAACTTCCATCCCTTTAAAGAAAAGGATAAGGATTTCAGGGTATCTGCAGATTTTGTGATAGAGGGTTTTGCCAGGTGCATTTCAACAATAATATGGGTCAATCACTTAAAGTACACTACATTCAATATGCATTTTTATGGCATAGCATGGAAAGACCTTTCTAAATGAATTGTTGTTCCATTCTCATGTTTGGCCTGAAAAATGGAAGCTTCTTCTATGATATGGAAAAAATGCCAAGCACCGACTATTGAAATTGCTGCTCATTTGGTTTACAATTGTATTTCTTGTCTCTTTAATTTCAAAATGCCCAATATATAGTACATCCAGACTTTTTGCATATTTAACCAGCTTATGTAGAAAAGATTCCATATTCTACGCCAATAGATACATGACATCCATTAAGTTATCATTCTCAAAAAAAAAAGATTCATGACATCCATGTACTGAATCGTCAAAAGAGCCATGCTAAGAAAGCCAAGCTTATACTTGTTGGCCCATGCCGATCAGAGAAAACACTCCTATACTGTGTCTAGTGGGGAGCTTTTTCATCTCAAAGAATAAGCAGATCTTCATATTTTGCATTTTACATTACCTTGTAGAAAGAAGAAAAAAGATATTGTGCATTGCTTAAATTTATACTGCCAGGATAAAAAGGAAGTGATCAAGACCTGCTTACAGAATTCAACTAGCTATATAGTTGTATTTTAGTTGAATTATTTGTGCTGCTCTTTGGCAAACAGGATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACCCGTCCTGGTAAACTGAGTGATC</genome_strand>
        <mrna_strand>TTTGAAGACTAGACTGGTTTTCCGGATCTCTCAGGCGCTGTTTGTGCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCG................................................................................................................................................................................................................................................................................AGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACCCGTCCTGGTAAACTGAGTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E269661" ref_strand="+" ref_description="SGN-E269661 [cLEM-17-E7]">
      <seq>tggttttccggatctctcaggcgctgtttgtcctatcgccgtcgatcaaccctctctacggtccttttccgagggcgtgactaacaatgttgggaggtagagcagtccatcgcttactaggcaggaaatttcaatctgaatccacggcatctccaattttatcatcctttgtttccaaaaaagctcaagaagaatttggttcttttggcatgaagtccttcagaacattagcactcattggagcgggtgtatctggacttctaggttttgcgacagtagcatctgctgatgaggctgaacacggattggaatgcccaagctatccttggcctcatgcaggcattcttagttcatacgatcatgcttcgattcgtcgtggtcaccaggtttatcaacaagtatgtgcatcttgtcattcaatgtcacttgtttcatatcgtgacttggtcggggtggcatatacagaggaagaagtaaaggctatggcagctgagattgaggtggcggatgggcctaatgatgagggtgaaatgtttacccgtcctggtaaactgagtgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="27301" stop="24168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27001" g_stop="26931" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26930" i_stop="26659" i_length="272">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26658" g_stop="26584" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="146" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26583" i_stop="25915" i_length="669">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25914" g_stop="25694" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="367" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25693" i_stop="24662" i_length="1032">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24661" g_stop="24468" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="561" r_length="194" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E269661" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269661" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27001" e_stop="26931"/>
          <exon e_start="26658" e_stop="26584"/>
          <exon e_start="25914" e_stop="25694"/>
          <exon e_start="24661" e_stop="24468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTTTCCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCGGTGAGATATTATCCCTTCGTCTCTCCTCAATTTCTTCGAAGCTCTAGCTTGTTTCATCTTGAAAAGCACCCTAGGATTCCCTTACTTGTTGACGGTGTTTTGAGTAGAACGAATTTGCAGATCGCACAAAGTTGTTTGCTAGGGGAATAAGGAACTGTAGAATGAGTTAGGTTAAATAAATAGTCCGTTCTTAGGCGTATTGACTTAGGAGTAAAATAATCAAATCTGTTGTGTTTTGTTTCCTATTTTTTAATTTTCTGATTTCCTGACAGAGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACGGTATGGCTGTACATTCTTTCTTCGTAGCCGATGCTTATACTCTGAATCTTTGGTTTATGTATATAAGGAGACTTATTGCCTTCAATGTGCATACTCTCTTAATCTCTTCAAAAAATGCTTTTTTTTGTACAATGATGTCTCGTATTTGAAGTGCATTTCATTGGCAACTGGAACACATTTCAGAGCTGTTTAGTTTTTTGTTCCGCAATATGTTGGGTCATGTTTTGATTTCTGTGTAATAGAAGGATAAATTATAATAGAGGATTAGTGTTCTTAAGACTAATAGAAGTGGGTTCTATTAAAGTTTAAGTGTACTAAAATTGTATTCAATATATTCAATCATGCAAACTGGAAAGTTCTCTGTGACAATGCAAATTGAAAAAAGGACTCAGCATTTTGTGACCCTGCATTAAATTGTTTTATGTGAATGCGGTCTGCTTTTTCCTGGTTGTGTTGGCATATATAGTTAAACATGCTGTACTACCTGATAACATAACATCCTTCTTGCGGCAATAAGCTAATAAGTAGTTCGACAAATCACCACTAGCTGTGCTAGAGCTCATATCTGATGTGGGAAATTTTGTGATTGGTACTGATTTAGTTGAAAGACTTGGGTCCTATCAATTTCAAGTTGTACAAATCTTTCATTAAAACTACATAAATTTTCAGGCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTCGTGAGTTTCTCGTGAATCTCTTATCCCCCCTCCCCCTTGCTCTCTGTTTTCTTTTTCGTTCAGTACTTTCAGTTGCCCTGCCCCCCCCCCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGACTTTTACGTGTATTTCTGATAAATAAAGCTCTCTGTTGTCTTTTTTGTTCTCTGCTTTCAGTTGCCCGTCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGGCTTTTACGTGTATTTCTGATAAAGAATGTTCTGTTAAGTGTAAACTTCCATCCCTTTAAAGAAAAGGATAAGGATTTCAGGGTATCTGCAGATTTTGTGATAGAGGGTTTTGCCAGGTGCATTTCAACAATAATATGGGTCAATCACTTAAAGTACACTACATTCAATATGCATTTTTATGGCATAGCATGGAAAGACCTTTCTAAATGAATTGTTGTTCCATTCTCATGTTTGGCCTGAAAAATGGAAGCTTCTTCTATGATATGGAAAAAATGCCAAGCACCGACTATTGAAATTGCTGCTCATTTGGTTTACAATTGTATTTCTTGTCTCTTTAATTTCAAAATGCCCAATATATAGTACATCCAGACTTTTTGCATATTTAACCAGCTTATGTAGAAAAGATTCCATATTCTACGCCAATAGATACATGACATCCATTAAGTTATCATTCTCAAAAAAAAAAGATTCATGACATCCATGTACTGAATCGTCAAAAGAGCCATGCTAAGAAAGCCAAGCTTATACTTGTTGGCCCATGCCGATCAGAGAAAACACTCCTATACTGTGTCTAGTGGGGAGCTTTTTCATCTCAAAGAATAAGCAGATCTTCATATTTTGCATTTTACATTACCTTGTAGAAAGAAGAAAAAAGATATTGTGCATTGCTTAAATTTATACTGCCAGGATAAAAAGGAAGTGATCAAGACCTGCTTACAGAATTCAACTAGCTATATAGTTGTATTTTAGTTGAATTATTTGTGCTGCTCTTTGGCAAACAGGATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACCCGTCCTGGTAAACTGAGTGATC</genome_strand>
        <mrna_strand>TGGTTTTCCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCG................................................................................................................................................................................................................................................................................AGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACCCGTCCTGGTAAACTGAGTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E268691" ref_strand="+" ref_description="SGN-E268691 [cLEM-9-K1]">
      <seq>cggatctctcaggcgctgtttgtcctatcgccgtcgatcaaccctctctacggtccttttccgagggcgtgactaacaatgttgggaggtagagcagtccatcgcttactaggcaggaaatttcaatctgaatccacggcatctccaattttatcatcctttgtttccaaaaaagctcaagaagaatttggttcttttggcatgaagtccttcagaacattagcactcattggagcgggtgtatctggacttctaggttttgcgacagtagcatctgctgatgaggctgaacacggattggaatgcccaagctatccttggcctcatgcaggcattcttagttcatacgatcatgcttcgattcgtcgtggtcaccaggtttatcaacaagtatgtgcatcttgtcattcaatgtcacttgtttcatatcgtgacttggtcggggtggcatatacagaggaagaagtaaaggctatggcagctgagattgaggtggcggatgggcctaatgatgagggtgaaatgtttacccgtcctggtaaactgagtgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="27293" stop="24168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26993" g_stop="26931" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26930" i_stop="26659" i_length="272">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26658" g_stop="26584" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="138" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26583" i_stop="25915" i_length="669">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25914" g_stop="25694" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="359" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25693" i_stop="24662" i_length="1032">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24661" g_stop="24468" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="553" r_length="194" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E268691" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268691" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26993" e_stop="26931"/>
          <exon e_start="26658" e_stop="26584"/>
          <exon e_start="25914" e_stop="25694"/>
          <exon e_start="24661" e_stop="24468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCGGTGAGATATTATCCCTTCGTCTCTCCTCAATTTCTTCGAAGCTCTAGCTTGTTTCATCTTGAAAAGCACCCTAGGATTCCCTTACTTGTTGACGGTGTTTTGAGTAGAACGAATTTGCAGATCGCACAAAGTTGTTTGCTAGGGGAATAAGGAACTGTAGAATGAGTTAGGTTAAATAAATAGTCCGTTCTTAGGCGTATTGACTTAGGAGTAAAATAATCAAATCTGTTGTGTTTTGTTTCCTATTTTTTAATTTTCTGATTTCCTGACAGAGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACGGTATGGCTGTACATTCTTTCTTCGTAGCCGATGCTTATACTCTGAATCTTTGGTTTATGTATATAAGGAGACTTATTGCCTTCAATGTGCATACTCTCTTAATCTCTTCAAAAAATGCTTTTTTTTGTACAATGATGTCTCGTATTTGAAGTGCATTTCATTGGCAACTGGAACACATTTCAGAGCTGTTTAGTTTTTTGTTCCGCAATATGTTGGGTCATGTTTTGATTTCTGTGTAATAGAAGGATAAATTATAATAGAGGATTAGTGTTCTTAAGACTAATAGAAGTGGGTTCTATTAAAGTTTAAGTGTACTAAAATTGTATTCAATATATTCAATCATGCAAACTGGAAAGTTCTCTGTGACAATGCAAATTGAAAAAAGGACTCAGCATTTTGTGACCCTGCATTAAATTGTTTTATGTGAATGCGGTCTGCTTTTTCCTGGTTGTGTTGGCATATATAGTTAAACATGCTGTACTACCTGATAACATAACATCCTTCTTGCGGCAATAAGCTAATAAGTAGTTCGACAAATCACCACTAGCTGTGCTAGAGCTCATATCTGATGTGGGAAATTTTGTGATTGGTACTGATTTAGTTGAAAGACTTGGGTCCTATCAATTTCAAGTTGTACAAATCTTTCATTAAAACTACATAAATTTTCAGGCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTCGTGAGTTTCTCGTGAATCTCTTATCCCCCCTCCCCCTTGCTCTCTGTTTTCTTTTTCGTTCAGTACTTTCAGTTGCCCTGCCCCCCCCCCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGACTTTTACGTGTATTTCTGATAAATAAAGCTCTCTGTTGTCTTTTTTGTTCTCTGCTTTCAGTTGCCCGTCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGGCTTTTACGTGTATTTCTGATAAAGAATGTTCTGTTAAGTGTAAACTTCCATCCCTTTAAAGAAAAGGATAAGGATTTCAGGGTATCTGCAGATTTTGTGATAGAGGGTTTTGCCAGGTGCATTTCAACAATAATATGGGTCAATCACTTAAAGTACACTACATTCAATATGCATTTTTATGGCATAGCATGGAAAGACCTTTCTAAATGAATTGTTGTTCCATTCTCATGTTTGGCCTGAAAAATGGAAGCTTCTTCTATGATATGGAAAAAATGCCAAGCACCGACTATTGAAATTGCTGCTCATTTGGTTTACAATTGTATTTCTTGTCTCTTTAATTTCAAAATGCCCAATATATAGTACATCCAGACTTTTTGCATATTTAACCAGCTTATGTAGAAAAGATTCCATATTCTACGCCAATAGATACATGACATCCATTAAGTTATCATTCTCAAAAAAAAAAGATTCATGACATCCATGTACTGAATCGTCAAAAGAGCCATGCTAAGAAAGCCAAGCTTATACTTGTTGGCCCATGCCGATCAGAGAAAACACTCCTATACTGTGTCTAGTGGGGAGCTTTTTCATCTCAAAGAATAAGCAGATCTTCATATTTTGCATTTTACATTACCTTGTAGAAAGAAGAAAAAAGATATTGTGCATTGCTTAAATTTATACTGCCAGGATAAAAAGGAAGTGATCAAGACCTGCTTACAGAATTCAACTAGCTATATAGTTGTATTTTAGTTGAATTATTTGTGCTGCTCTTTGGCAAACAGGATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACCCGTCCTGGTAAACTGAGTGATC</genome_strand>
        <mrna_strand>CGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCG................................................................................................................................................................................................................................................................................AGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACCCGTCCTGGTAAACTGAGTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E299747" ref_strand="+" ref_description="SGN-E299747 [cLEW-1-J6]">
      <seq>tcaggcgctgtttgtcctatcgccgtcgatcaaccctctctacggtccttttccgagggcgtgactaacaatgttgggaggtagagcagtccatcgcttactaggcaggaaatttcaatctgaatccacggcatctccaattttatcatcctttgtttccaaaaaagctcaagaagaatttggttcttttggcatgaagtccttcagaacattagcactcattggagcgggtgtatctggacttctaggttttgcgacagtagcatctgctgatgaggctgaacacggattggaatgcccaagctatccttggcctcatgcaggcattcttagttcatacgatcatgcttcgattcgtcgtggtcaccaggtttatcaacaagtatgtgcatcttgtcattcaatgtcacttgtttcatatcgtgacttggtcggggtggcatatacagaggaagaagtaaaggctatggcagctgagattgaggtggcggatgggcctaatgatgagggtgaaatgtttacccgtcctggtaaactgagtgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="27285" stop="24168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26985" g_stop="26931" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26930" i_stop="26659" i_length="272">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26658" g_stop="26584" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="130" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26583" i_stop="25915" i_length="669">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25914" g_stop="25694" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="351" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25693" i_stop="24662" i_length="1032">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24661" g_stop="24468" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="545" r_length="194" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E299747" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299747" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26985" e_stop="26931"/>
          <exon e_start="26658" e_stop="26584"/>
          <exon e_start="25914" e_stop="25694"/>
          <exon e_start="24661" e_stop="24468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCGGTGAGATATTATCCCTTCGTCTCTCCTCAATTTCTTCGAAGCTCTAGCTTGTTTCATCTTGAAAAGCACCCTAGGATTCCCTTACTTGTTGACGGTGTTTTGAGTAGAACGAATTTGCAGATCGCACAAAGTTGTTTGCTAGGGGAATAAGGAACTGTAGAATGAGTTAGGTTAAATAAATAGTCCGTTCTTAGGCGTATTGACTTAGGAGTAAAATAATCAAATCTGTTGTGTTTTGTTTCCTATTTTTTAATTTTCTGATTTCCTGACAGAGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACGGTATGGCTGTACATTCTTTCTTCGTAGCCGATGCTTATACTCTGAATCTTTGGTTTATGTATATAAGGAGACTTATTGCCTTCAATGTGCATACTCTCTTAATCTCTTCAAAAAATGCTTTTTTTTGTACAATGATGTCTCGTATTTGAAGTGCATTTCATTGGCAACTGGAACACATTTCAGAGCTGTTTAGTTTTTTGTTCCGCAATATGTTGGGTCATGTTTTGATTTCTGTGTAATAGAAGGATAAATTATAATAGAGGATTAGTGTTCTTAAGACTAATAGAAGTGGGTTCTATTAAAGTTTAAGTGTACTAAAATTGTATTCAATATATTCAATCATGCAAACTGGAAAGTTCTCTGTGACAATGCAAATTGAAAAAAGGACTCAGCATTTTGTGACCCTGCATTAAATTGTTTTATGTGAATGCGGTCTGCTTTTTCCTGGTTGTGTTGGCATATATAGTTAAACATGCTGTACTACCTGATAACATAACATCCTTCTTGCGGCAATAAGCTAATAAGTAGTTCGACAAATCACCACTAGCTGTGCTAGAGCTCATATCTGATGTGGGAAATTTTGTGATTGGTACTGATTTAGTTGAAAGACTTGGGTCCTATCAATTTCAAGTTGTACAAATCTTTCATTAAAACTACATAAATTTTCAGGCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTCGTGAGTTTCTCGTGAATCTCTTATCCCCCCTCCCCCTTGCTCTCTGTTTTCTTTTTCGTTCAGTACTTTCAGTTGCCCTGCCCCCCCCCCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGACTTTTACGTGTATTTCTGATAAATAAAGCTCTCTGTTGTCTTTTTTGTTCTCTGCTTTCAGTTGCCCGTCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGGCTTTTACGTGTATTTCTGATAAAGAATGTTCTGTTAAGTGTAAACTTCCATCCCTTTAAAGAAAAGGATAAGGATTTCAGGGTATCTGCAGATTTTGTGATAGAGGGTTTTGCCAGGTGCATTTCAACAATAATATGGGTCAATCACTTAAAGTACACTACATTCAATATGCATTTTTATGGCATAGCATGGAAAGACCTTTCTAAATGAATTGTTGTTCCATTCTCATGTTTGGCCTGAAAAATGGAAGCTTCTTCTATGATATGGAAAAAATGCCAAGCACCGACTATTGAAATTGCTGCTCATTTGGTTTACAATTGTATTTCTTGTCTCTTTAATTTCAAAATGCCCAATATATAGTACATCCAGACTTTTTGCATATTTAACCAGCTTATGTAGAAAAGATTCCATATTCTACGCCAATAGATACATGACATCCATTAAGTTATCATTCTCAAAAAAAAAAGATTCATGACATCCATGTACTGAATCGTCAAAAGAGCCATGCTAAGAAAGCCAAGCTTATACTTGTTGGCCCATGCCGATCAGAGAAAACACTCCTATACTGTGTCTAGTGGGGAGCTTTTTCATCTCAAAGAATAAGCAGATCTTCATATTTTGCATTTTACATTACCTTGTAGAAAGAAGAAAAAAGATATTGTGCATTGCTTAAATTTATACTGCCAGGATAAAAAGGAAGTGATCAAGACCTGCTTACAGAATTCAACTAGCTATATAGTTGTATTTTAGTTGAATTATTTGTGCTGCTCTTTGGCAAACAGGATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACCCGTCCTGGTAAACTGAGTGATC</genome_strand>
        <mrna_strand>TCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCG................................................................................................................................................................................................................................................................................AGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACCCGTCCTGGTAAACTGAGTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E208083" ref_strand="+" ref_description="SGN-E208083 [cLEC-34-J19]">
      <seq>agactggttttccggatctctcaggcgctgtttgtcctatcgccgtcgatcaaccctctctacggtccttttccgagggcgtgactaacaatgttgggaggtagagcagtccatcgcttactaggcaggaaatttcaatctgaatccacggcatctccaattttatcatcctttgtttccaaaaaagctcaagaagaatttggttcttttggcatgaagtccttcagaacattagcactcattggagcgggtgtatctggacttctaggttttgcgacagtagcatctgctgatgaggctgaacacggattggaatgcccaagctatccttggcctcatgcaggcattcttagttcatacgatcatgcttcgattcgtcgtggtcaccaggtttatcaacaagtatgtgcatcttgtcattcaatgtcacttgtttcatatcgtgacttggtcggggtggcatatacagaggaagaagtaaaggctatggcagctgagattgaggtggcggatgggcctaatgatgagggtgaaatgtttacccgtcctggtaaactgagtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="27305" stop="24170"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27005" g_stop="26931" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26930" i_stop="26659" i_length="272">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26658" g_stop="26584" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="150" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26583" i_stop="25915" i_length="669">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25914" g_stop="25694" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="371" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25693" i_stop="24662" i_length="1032">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24661" g_stop="24470" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="563" r_length="192" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E208083" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208083" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27005" e_stop="26931"/>
          <exon e_start="26658" e_stop="26584"/>
          <exon e_start="25914" e_stop="25694"/>
          <exon e_start="24661" e_stop="24470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACTGGTTTTCCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCGGTGAGATATTATCCCTTCGTCTCTCCTCAATTTCTTCGAAGCTCTAGCTTGTTTCATCTTGAAAAGCACCCTAGGATTCCCTTACTTGTTGACGGTGTTTTGAGTAGAACGAATTTGCAGATCGCACAAAGTTGTTTGCTAGGGGAATAAGGAACTGTAGAATGAGTTAGGTTAAATAAATAGTCCGTTCTTAGGCGTATTGACTTAGGAGTAAAATAATCAAATCTGTTGTGTTTTGTTTCCTATTTTTTAATTTTCTGATTTCCTGACAGAGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACGGTATGGCTGTACATTCTTTCTTCGTAGCCGATGCTTATACTCTGAATCTTTGGTTTATGTATATAAGGAGACTTATTGCCTTCAATGTGCATACTCTCTTAATCTCTTCAAAAAATGCTTTTTTTTGTACAATGATGTCTCGTATTTGAAGTGCATTTCATTGGCAACTGGAACACATTTCAGAGCTGTTTAGTTTTTTGTTCCGCAATATGTTGGGTCATGTTTTGATTTCTGTGTAATAGAAGGATAAATTATAATAGAGGATTAGTGTTCTTAAGACTAATAGAAGTGGGTTCTATTAAAGTTTAAGTGTACTAAAATTGTATTCAATATATTCAATCATGCAAACTGGAAAGTTCTCTGTGACAATGCAAATTGAAAAAAGGACTCAGCATTTTGTGACCCTGCATTAAATTGTTTTATGTGAATGCGGTCTGCTTTTTCCTGGTTGTGTTGGCATATATAGTTAAACATGCTGTACTACCTGATAACATAACATCCTTCTTGCGGCAATAAGCTAATAAGTAGTTCGACAAATCACCACTAGCTGTGCTAGAGCTCATATCTGATGTGGGAAATTTTGTGATTGGTACTGATTTAGTTGAAAGACTTGGGTCCTATCAATTTCAAGTTGTACAAATCTTTCATTAAAACTACATAAATTTTCAGGCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTCGTGAGTTTCTCGTGAATCTCTTATCCCCCCTCCCCCTTGCTCTCTGTTTTCTTTTTCGTTCAGTACTTTCAGTTGCCCTGCCCCCCCCCCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGACTTTTACGTGTATTTCTGATAAATAAAGCTCTCTGTTGTCTTTTTTGTTCTCTGCTTTCAGTTGCCCGTCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGGCTTTTACGTGTATTTCTGATAAAGAATGTTCTGTTAAGTGTAAACTTCCATCCCTTTAAAGAAAAGGATAAGGATTTCAGGGTATCTGCAGATTTTGTGATAGAGGGTTTTGCCAGGTGCATTTCAACAATAATATGGGTCAATCACTTAAAGTACACTACATTCAATATGCATTTTTATGGCATAGCATGGAAAGACCTTTCTAAATGAATTGTTGTTCCATTCTCATGTTTGGCCTGAAAAATGGAAGCTTCTTCTATGATATGGAAAAAATGCCAAGCACCGACTATTGAAATTGCTGCTCATTTGGTTTACAATTGTATTTCTTGTCTCTTTAATTTCAAAATGCCCAATATATAGTACATCCAGACTTTTTGCATATTTAACCAGCTTATGTAGAAAAGATTCCATATTCTACGCCAATAGATACATGACATCCATTAAGTTATCATTCTCAAAAAAAAAAGATTCATGACATCCATGTACTGAATCGTCAAAAGAGCCATGCTAAGAAAGCCAAGCTTATACTTGTTGGCCCATGCCGATCAGAGAAAACACTCCTATACTGTGTCTAGTGGGGAGCTTTTTCATCTCAAAGAATAAGCAGATCTTCATATTTTGCATTTTACATTACCTTGTAGAAAGAAGAAAAAAGATATTGTGCATTGCTTAAATTTATACTGCCAGGATAAAAAGGAAGTGATCAAGACCTGCTTACAGAATTCAACTAGCTATATAGTTGTATTTTAGTTGAATTATTTGTGCTGCTCTTTGGCAAACAGGATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACCCGTCCTGGTAAACTGAGTGA</genome_strand>
        <mrna_strand>AGACTGGTTTTCCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCG................................................................................................................................................................................................................................................................................AGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACCCGTCCTGGTAAACTGAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E265838" ref_strand="+" ref_description="SGN-E265838 [cLEI-11-G22]">
      <seq>aaaacctcctcctcttagaattttctgaatagttttgaagactagactggttttccggatctctcaggcgctgtttgtcctatcgccgtcgatcaaccctctctacggtccttttccgagggcgtgactaacaatgttgggaggtagagcagtccatcgcttactaggcaggaaatttcaatctgaatccacggcatctccaattttatcatcctttgtttccaaaaaagctcaagaagaatttggttcttttggcatgaagtccttcagaacattagcactcattggagcgggtgtatctggacttctaggttttgcgacagtagcatctgctgatgaggctgaacacggattggaatgcccaagctatccttggcctcatgcaggcattcttagttcatacgatcatgcttcgattcgtcgtggtcaccaggtttatcaacaagtatgtgcatcttgtcattcaatgtcacttgtttcatatcgtgacttggtcggggtggcatatacagaggaagaagtaaaggctatggcagctgagattgaagtggcggatgggcctaatgatgagggtgaaatgtttacccgtcctggtaaactgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="27348" stop="24173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27048" g_stop="26931" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26930" i_stop="26659" i_length="272">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26658" g_stop="26584" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="193" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26583" i_stop="25915" i_length="669">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25914" g_stop="25694" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="414" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25693" i_stop="24662" i_length="1032">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24661" g_stop="24473" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="603" r_length="189" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E265838" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265838" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27048" e_stop="26931"/>
          <exon e_start="26658" e_stop="26584"/>
          <exon e_start="25914" e_stop="25694"/>
          <exon e_start="24661" e_stop="24473"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCTCCTCCTCTTAGAATTTTCTGAATAGTTTTGAAGACTAGACTGGTTTTCCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCGGTGAGATATTATCCCTTCGTCTCTCCTCAATTTCTTCGAAGCTCTAGCTTGTTTCATCTTGAAAAGCACCCTAGGATTCCCTTACTTGTTGACGGTGTTTTGAGTAGAACGAATTTGCAGATCGCACAAAGTTGTTTGCTAGGGGAATAAGGAACTGTAGAATGAGTTAGGTTAAATAAATAGTCCGTTCTTAGGCGTATTGACTTAGGAGTAAAATAATCAAATCTGTTGTGTTTTGTTTCCTATTTTTTAATTTTCTGATTTCCTGACAGAGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACGGTATGGCTGTACATTCTTTCTTCGTAGCCGATGCTTATACTCTGAATCTTTGGTTTATGTATATAAGGAGACTTATTGCCTTCAATGTGCATACTCTCTTAATCTCTTCAAAAAATGCTTTTTTTTGTACAATGATGTCTCGTATTTGAAGTGCATTTCATTGGCAACTGGAACACATTTCAGAGCTGTTTAGTTTTTTGTTCCGCAATATGTTGGGTCATGTTTTGATTTCTGTGTAATAGAAGGATAAATTATAATAGAGGATTAGTGTTCTTAAGACTAATAGAAGTGGGTTCTATTAAAGTTTAAGTGTACTAAAATTGTATTCAATATATTCAATCATGCAAACTGGAAAGTTCTCTGTGACAATGCAAATTGAAAAAAGGACTCAGCATTTTGTGACCCTGCATTAAATTGTTTTATGTGAATGCGGTCTGCTTTTTCCTGGTTGTGTTGGCATATATAGTTAAACATGCTGTACTACCTGATAACATAACATCCTTCTTGCGGCAATAAGCTAATAAGTAGTTCGACAAATCACCACTAGCTGTGCTAGAGCTCATATCTGATGTGGGAAATTTTGTGATTGGTACTGATTTAGTTGAAAGACTTGGGTCCTATCAATTTCAAGTTGTACAAATCTTTCATTAAAACTACATAAATTTTCAGGCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTCGTGAGTTTCTCGTGAATCTCTTATCCCCCCTCCCCCTTGCTCTCTGTTTTCTTTTTCGTTCAGTACTTTCAGTTGCCCTGCCCCCCCCCCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGACTTTTACGTGTATTTCTGATAAATAAAGCTCTCTGTTGTCTTTTTTGTTCTCTGCTTTCAGTTGCCCGTCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGGCTTTTACGTGTATTTCTGATAAAGAATGTTCTGTTAAGTGTAAACTTCCATCCCTTTAAAGAAAAGGATAAGGATTTCAGGGTATCTGCAGATTTTGTGATAGAGGGTTTTGCCAGGTGCATTTCAACAATAATATGGGTCAATCACTTAAAGTACACTACATTCAATATGCATTTTTATGGCATAGCATGGAAAGACCTTTCTAAATGAATTGTTGTTCCATTCTCATGTTTGGCCTGAAAAATGGAAGCTTCTTCTATGATATGGAAAAAATGCCAAGCACCGACTATTGAAATTGCTGCTCATTTGGTTTACAATTGTATTTCTTGTCTCTTTAATTTCAAAATGCCCAATATATAGTACATCCAGACTTTTTGCATATTTAACCAGCTTATGTAGAAAAGATTCCATATTCTACGCCAATAGATACATGACATCCATTAAGTTATCATTCTCAAAAAAAAAAGATTCATGACATCCATGTACTGAATCGTCAAAAGAGCCATGCTAAGAAAGCCAAGCTTATACTTGTTGGCCCATGCCGATCAGAGAAAACACTCCTATACTGTGTCTAGTGGGGAGCTTTTTCATCTCAAAGAATAAGCAGATCTTCATATTTTGCATTTTACATTACCTTGTAGAAAGAAGAAAAAAGATATTGTGCATTGCTTAAATTTATACTGCCAGGATAAAAAGGAAGTGATCAAGACCTGCTTACAGAATTCAACTAGCTATATAGTTGTATTTTAGTTGAATTATTTGTGCTGCTCTTTGGCAAACAGGATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACCCGTCCTGGTAAACTGAG</genome_strand>
        <mrna_strand>AAAACCTCCTCCTCTTAGAATTTTCTGAATAGTTTTGAAGACTAGACTGGTTTTCCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCG................................................................................................................................................................................................................................................................................AGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGAGATTGAAGTGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACCCGTCCTGGTAAACTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E206426" ref_strand="+" ref_description="SGN-E206426 [cLEC-23-G7]">
      <seq>ggatctctcaggcgctgtttgtcctatcgccgtcgatcaaccctctctgcggtccttttccgagggcgtgactaacaatgttgggaggtagagcagtccatcgcttactaggcaggaaatttcaatctgaatccacggcatctccaattttatcatcctttgtttccaaaaaagctcaagaagaatttggttcttttggcatgaagtccttcagaacattagcactcattggagcgggtgtatctggacttctaggttttgcgacagtagcatctgctgatgaggctgaacacggattggaatgcccaagctatccttggcctcatgcaggcattcttagttcatacgatcatgcttcgattcgtcgtggtcaccaggtttatcaacaagtatgtgcatcttgtcattcaatgtcacttgtttcatatcgtgacttggtcggggtggcatatacagaggaagaagtaaaggctatggcagctgagattgaggtggcggatgggcctaatgatgagggtgaaatgtttacccgtcctggtaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="27292" stop="24176"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26992" g_stop="26931" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26930" i_stop="26659" i_length="272">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26658" g_stop="26584" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="137" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26583" i_stop="25915" i_length="669">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25914" g_stop="25694" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="358" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25693" i_stop="24662" i_length="1032">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24661" g_stop="24476" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="544" r_length="186" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E206426" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206426" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26992" e_stop="26931"/>
          <exon e_start="26658" e_stop="26584"/>
          <exon e_start="25914" e_stop="25694"/>
          <exon e_start="24661" e_stop="24476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCGGTGAGATATTATCCCTTCGTCTCTCCTCAATTTCTTCGAAGCTCTAGCTTGTTTCATCTTGAAAAGCACCCTAGGATTCCCTTACTTGTTGACGGTGTTTTGAGTAGAACGAATTTGCAGATCGCACAAAGTTGTTTGCTAGGGGAATAAGGAACTGTAGAATGAGTTAGGTTAAATAAATAGTCCGTTCTTAGGCGTATTGACTTAGGAGTAAAATAATCAAATCTGTTGTGTTTTGTTTCCTATTTTTTAATTTTCTGATTTCCTGACAGAGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACGGTATGGCTGTACATTCTTTCTTCGTAGCCGATGCTTATACTCTGAATCTTTGGTTTATGTATATAAGGAGACTTATTGCCTTCAATGTGCATACTCTCTTAATCTCTTCAAAAAATGCTTTTTTTTGTACAATGATGTCTCGTATTTGAAGTGCATTTCATTGGCAACTGGAACACATTTCAGAGCTGTTTAGTTTTTTGTTCCGCAATATGTTGGGTCATGTTTTGATTTCTGTGTAATAGAAGGATAAATTATAATAGAGGATTAGTGTTCTTAAGACTAATAGAAGTGGGTTCTATTAAAGTTTAAGTGTACTAAAATTGTATTCAATATATTCAATCATGCAAACTGGAAAGTTCTCTGTGACAATGCAAATTGAAAAAAGGACTCAGCATTTTGTGACCCTGCATTAAATTGTTTTATGTGAATGCGGTCTGCTTTTTCCTGGTTGTGTTGGCATATATAGTTAAACATGCTGTACTACCTGATAACATAACATCCTTCTTGCGGCAATAAGCTAATAAGTAGTTCGACAAATCACCACTAGCTGTGCTAGAGCTCATATCTGATGTGGGAAATTTTGTGATTGGTACTGATTTAGTTGAAAGACTTGGGTCCTATCAATTTCAAGTTGTACAAATCTTTCATTAAAACTACATAAATTTTCAGGCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTCGTGAGTTTCTCGTGAATCTCTTATCCCCCCTCCCCCTTGCTCTCTGTTTTCTTTTTCGTTCAGTACTTTCAGTTGCCCTGCCCCCCCCCCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGACTTTTACGTGTATTTCTGATAAATAAAGCTCTCTGTTGTCTTTTTTGTTCTCTGCTTTCAGTTGCCCGTCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGGCTTTTACGTGTATTTCTGATAAAGAATGTTCTGTTAAGTGTAAACTTCCATCCCTTTAAAGAAAAGGATAAGGATTTCAGGGTATCTGCAGATTTTGTGATAGAGGGTTTTGCCAGGTGCATTTCAACAATAATATGGGTCAATCACTTAAAGTACACTACATTCAATATGCATTTTTATGGCATAGCATGGAAAGACCTTTCTAAATGAATTGTTGTTCCATTCTCATGTTTGGCCTGAAAAATGGAAGCTTCTTCTATGATATGGAAAAAATGCCAAGCACCGACTATTGAAATTGCTGCTCATTTGGTTTACAATTGTATTTCTTGTCTCTTTAATTTCAAAATGCCCAATATATAGTACATCCAGACTTTTTGCATATTTAACCAGCTTATGTAGAAAAGATTCCATATTCTACGCCAATAGATACATGACATCCATTAAGTTATCATTCTCAAAAAAAAAAGATTCATGACATCCATGTACTGAATCGTCAAAAGAGCCATGCTAAGAAAGCCAAGCTTATACTTGTTGGCCCATGCCGATCAGAGAAAACACTCCTATACTGTGTCTAGTGGGGAGCTTTTTCATCTCAAAGAATAAGCAGATCTTCATATTTTGCATTTTACATTACCTTGTAGAAAGAAGAAAAAAGATATTGTGCATTGCTTAAATTTATACTGCCAGGATAAAAAGGAAGTGATCAAGACCTGCTTACAGAATTCAACTAGCTATATAGTTGTATTTTAGTTGAATTATTTGTGCTGCTCTTTGGCAAACAGGATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACCCGTCCTGGTAAACT</genome_strand>
        <mrna_strand>GGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTGCGGTCCTTTTCCG................................................................................................................................................................................................................................................................................AGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACCCGTCCTGGTAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E313170" ref_strand="+" ref_description="SGN-E313170 [cTOA-18-D21]">
      <seq>tggttttccggatctctcaggcgctgtttgtcctatcgccgtcgatcaaccctctctacggtccttttccgagggcgtgactaacaatgttgggaggtagagcagtccatcgcttactaggcaggaaatttcaatctgaatccacggcatctccaattttatcatcctttgtttccaaaaaagctcaagaagaatttggttcttttggcatgaagtccttcagaacattagcactcattggagcgggtgtatctggacttctaggttttgcgacagtagcatctgctgatgaggctgaacacggattggaatgcccaagctatccttggcctcatgcaggcattcttagttcatacgatcatgcttcgattcgtcgtggtcaccaggtttatcaacaagtatgtgcatcttgtcattcaatgtcacttgtttcatatcgtgacttggtcggggtggcatatacagaggaagaagtaaaggctatggcagctgagattgaggtggcggatgggcctaatgatgagggtgaaatgtttacccgtcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="27301" stop="24184"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27001" g_stop="26931" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26930" i_stop="26659" i_length="272">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26658" g_stop="26584" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="146" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26583" i_stop="25915" i_length="669">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25914" g_stop="25694" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="367" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25693" i_stop="24662" i_length="1032">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24661" g_stop="24484" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="545" r_length="178" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E313170" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313170" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27001" e_stop="26931"/>
          <exon e_start="26658" e_stop="26584"/>
          <exon e_start="25914" e_stop="25694"/>
          <exon e_start="24661" e_stop="24484"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTTTCCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCGGTGAGATATTATCCCTTCGTCTCTCCTCAATTTCTTCGAAGCTCTAGCTTGTTTCATCTTGAAAAGCACCCTAGGATTCCCTTACTTGTTGACGGTGTTTTGAGTAGAACGAATTTGCAGATCGCACAAAGTTGTTTGCTAGGGGAATAAGGAACTGTAGAATGAGTTAGGTTAAATAAATAGTCCGTTCTTAGGCGTATTGACTTAGGAGTAAAATAATCAAATCTGTTGTGTTTTGTTTCCTATTTTTTAATTTTCTGATTTCCTGACAGAGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACGGTATGGCTGTACATTCTTTCTTCGTAGCCGATGCTTATACTCTGAATCTTTGGTTTATGTATATAAGGAGACTTATTGCCTTCAATGTGCATACTCTCTTAATCTCTTCAAAAAATGCTTTTTTTTGTACAATGATGTCTCGTATTTGAAGTGCATTTCATTGGCAACTGGAACACATTTCAGAGCTGTTTAGTTTTTTGTTCCGCAATATGTTGGGTCATGTTTTGATTTCTGTGTAATAGAAGGATAAATTATAATAGAGGATTAGTGTTCTTAAGACTAATAGAAGTGGGTTCTATTAAAGTTTAAGTGTACTAAAATTGTATTCAATATATTCAATCATGCAAACTGGAAAGTTCTCTGTGACAATGCAAATTGAAAAAAGGACTCAGCATTTTGTGACCCTGCATTAAATTGTTTTATGTGAATGCGGTCTGCTTTTTCCTGGTTGTGTTGGCATATATAGTTAAACATGCTGTACTACCTGATAACATAACATCCTTCTTGCGGCAATAAGCTAATAAGTAGTTCGACAAATCACCACTAGCTGTGCTAGAGCTCATATCTGATGTGGGAAATTTTGTGATTGGTACTGATTTAGTTGAAAGACTTGGGTCCTATCAATTTCAAGTTGTACAAATCTTTCATTAAAACTACATAAATTTTCAGGCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTCGTGAGTTTCTCGTGAATCTCTTATCCCCCCTCCCCCTTGCTCTCTGTTTTCTTTTTCGTTCAGTACTTTCAGTTGCCCTGCCCCCCCCCCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGACTTTTACGTGTATTTCTGATAAATAAAGCTCTCTGTTGTCTTTTTTGTTCTCTGCTTTCAGTTGCCCGTCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGGCTTTTACGTGTATTTCTGATAAAGAATGTTCTGTTAAGTGTAAACTTCCATCCCTTTAAAGAAAAGGATAAGGATTTCAGGGTATCTGCAGATTTTGTGATAGAGGGTTTTGCCAGGTGCATTTCAACAATAATATGGGTCAATCACTTAAAGTACACTACATTCAATATGCATTTTTATGGCATAGCATGGAAAGACCTTTCTAAATGAATTGTTGTTCCATTCTCATGTTTGGCCTGAAAAATGGAAGCTTCTTCTATGATATGGAAAAAATGCCAAGCACCGACTATTGAAATTGCTGCTCATTTGGTTTACAATTGTATTTCTTGTCTCTTTAATTTCAAAATGCCCAATATATAGTACATCCAGACTTTTTGCATATTTAACCAGCTTATGTAGAAAAGATTCCATATTCTACGCCAATAGATACATGACATCCATTAAGTTATCATTCTCAAAAAAAAAAGATTCATGACATCCATGTACTGAATCGTCAAAAGAGCCATGCTAAGAAAGCCAAGCTTATACTTGTTGGCCCATGCCGATCAGAGAAAACACTCCTATACTGTGTCTAGTGGGGAGCTTTTTCATCTCAAAGAATAAGCAGATCTTCATATTTTGCATTTTACATTACCTTGTAGAAAGAAGAAAAAAGATATTGTGCATTGCTTAAATTTATACTGCCAGGATAAAAAGGAAGTGATCAAGACCTGCTTACAGAATTCAACTAGCTATATAGTTGTATTTTAGTTGAATTATTTGTGCTGCTCTTTGGCAAACAGGATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACCCGTCCT</genome_strand>
        <mrna_strand>TGGTTTTCCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCG................................................................................................................................................................................................................................................................................AGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACCCGTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E304632" ref_strand="+" ref_description="SGN-E304632 [cLEX-11-A9]">
      <seq>cctcctcctcttagaattttctgaatagttttgaagactagactggttttccggatctctcaggcgctgtttgtcctatcgccgtcgatcaaccctctctacggtccttttccgagggcgtgactaacaatgttgggaggtagagcagtccatcgcttactaggcaggaaatttcaatctgaatccacggcatctccaattttatcatcctttgtttccaaaaaagctcaagaagaatttggttcttttggcatgaagtccttcagaacattagcactcattggagcgggtgtatctggacttctaggttttgcgacagtagcatctgctgatgaggctgaacacggattggaatgcccaagctatccttggcctcatgcaggcattcttagttcatacgatcatgcttcgattcgtcgtggtcaccaggtttatcaacaagtatgtgcatcttgtcattcaatgtcacttgtttcatatcgtgacttggtcggggtggcatatacagaggaagaagtaaaggctatggcagctgagattgaggtggcggatgggcctaatgatgagggtgaaatgtttacccgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="27344" stop="24186"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27044" g_stop="26931" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26930" i_stop="26659" i_length="272">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26658" g_stop="26584" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="189" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26583" i_stop="25915" i_length="669">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25914" g_stop="25694" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="410" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25693" i_stop="24662" i_length="1032">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24661" g_stop="24486" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="586" r_length="176" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E304632" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304632" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27044" e_stop="26931"/>
          <exon e_start="26658" e_stop="26584"/>
          <exon e_start="25914" e_stop="25694"/>
          <exon e_start="24661" e_stop="24486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCCTCCTCTTAGAATTTTCTGAATAGTTTTGAAGACTAGACTGGTTTTCCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCGGTGAGATATTATCCCTTCGTCTCTCCTCAATTTCTTCGAAGCTCTAGCTTGTTTCATCTTGAAAAGCACCCTAGGATTCCCTTACTTGTTGACGGTGTTTTGAGTAGAACGAATTTGCAGATCGCACAAAGTTGTTTGCTAGGGGAATAAGGAACTGTAGAATGAGTTAGGTTAAATAAATAGTCCGTTCTTAGGCGTATTGACTTAGGAGTAAAATAATCAAATCTGTTGTGTTTTGTTTCCTATTTTTTAATTTTCTGATTTCCTGACAGAGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACGGTATGGCTGTACATTCTTTCTTCGTAGCCGATGCTTATACTCTGAATCTTTGGTTTATGTATATAAGGAGACTTATTGCCTTCAATGTGCATACTCTCTTAATCTCTTCAAAAAATGCTTTTTTTTGTACAATGATGTCTCGTATTTGAAGTGCATTTCATTGGCAACTGGAACACATTTCAGAGCTGTTTAGTTTTTTGTTCCGCAATATGTTGGGTCATGTTTTGATTTCTGTGTAATAGAAGGATAAATTATAATAGAGGATTAGTGTTCTTAAGACTAATAGAAGTGGGTTCTATTAAAGTTTAAGTGTACTAAAATTGTATTCAATATATTCAATCATGCAAACTGGAAAGTTCTCTGTGACAATGCAAATTGAAAAAAGGACTCAGCATTTTGTGACCCTGCATTAAATTGTTTTATGTGAATGCGGTCTGCTTTTTCCTGGTTGTGTTGGCATATATAGTTAAACATGCTGTACTACCTGATAACATAACATCCTTCTTGCGGCAATAAGCTAATAAGTAGTTCGACAAATCACCACTAGCTGTGCTAGAGCTCATATCTGATGTGGGAAATTTTGTGATTGGTACTGATTTAGTTGAAAGACTTGGGTCCTATCAATTTCAAGTTGTACAAATCTTTCATTAAAACTACATAAATTTTCAGGCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTCGTGAGTTTCTCGTGAATCTCTTATCCCCCCTCCCCCTTGCTCTCTGTTTTCTTTTTCGTTCAGTACTTTCAGTTGCCCTGCCCCCCCCCCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGACTTTTACGTGTATTTCTGATAAATAAAGCTCTCTGTTGTCTTTTTTGTTCTCTGCTTTCAGTTGCCCGTCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGGCTTTTACGTGTATTTCTGATAAAGAATGTTCTGTTAAGTGTAAACTTCCATCCCTTTAAAGAAAAGGATAAGGATTTCAGGGTATCTGCAGATTTTGTGATAGAGGGTTTTGCCAGGTGCATTTCAACAATAATATGGGTCAATCACTTAAAGTACACTACATTCAATATGCATTTTTATGGCATAGCATGGAAAGACCTTTCTAAATGAATTGTTGTTCCATTCTCATGTTTGGCCTGAAAAATGGAAGCTTCTTCTATGATATGGAAAAAATGCCAAGCACCGACTATTGAAATTGCTGCTCATTTGGTTTACAATTGTATTTCTTGTCTCTTTAATTTCAAAATGCCCAATATATAGTACATCCAGACTTTTTGCATATTTAACCAGCTTATGTAGAAAAGATTCCATATTCTACGCCAATAGATACATGACATCCATTAAGTTATCATTCTCAAAAAAAAAAGATTCATGACATCCATGTACTGAATCGTCAAAAGAGCCATGCTAAGAAAGCCAAGCTTATACTTGTTGGCCCATGCCGATCAGAGAAAACACTCCTATACTGTGTCTAGTGGGGAGCTTTTTCATCTCAAAGAATAAGCAGATCTTCATATTTTGCATTTTACATTACCTTGTAGAAAGAAGAAAAAAGATATTGTGCATTGCTTAAATTTATACTGCCAGGATAAAAAGGAAGTGATCAAGACCTGCTTACAGAATTCAACTAGCTATATAGTTGTATTTTAGTTGAATTATTTGTGCTGCTCTTTGGCAAACAGGATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACCCGTC</genome_strand>
        <mrna_strand>CCTCCTCCTCTTAGAATTTTCTGAATAGTTTTGAAGACTAGACTGGTTTTCCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCG................................................................................................................................................................................................................................................................................AGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACCCGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E245536" ref_strand="+" ref_description="SGN-E245536 [cLEF-43-H22]">
      <seq>tctctcaggcgctgtttgtgctatcgccgtcgatcaaccctctctacggtccttttccgagggcgtgactaacaatgttgggaggtagagcagtccatcgcttactaggcaggaaatttcaatctgaatccacggcatctccaattttatcatcctttgtttccaaaaaagctcaagaagaatttggttcttttggcatgaagtccttcagaacattagcactcattggagcgggtgtatctggacttctaggttttgcgacagtagcatctgctgatgaggctgaacacggattggaatgcccaagctatccttggcctcatgcaggcattcttagttcatacgatcatgcttcgattcgtcgtggtcaccaggtttatcaacaagtatgtgcatcttgtcattcaatgtcacttgtttcatatcgtgacttggtcggggtggcatatacagaggaagaagtaaaggctatggcagctgagattgaggtggcggatgggcctaatgatgagggtgaaatgtttaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="27289" stop="24189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26989" g_stop="26931" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26930" i_stop="26659" i_length="272">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26658" g_stop="26584" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="134" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26583" i_stop="25915" i_length="669">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25914" g_stop="25694" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="355" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25693" i_stop="24662" i_length="1032">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24661" g_stop="24489" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="528" r_length="173" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E245536" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26989" e_stop="26931"/>
          <exon e_start="26658" e_stop="26584"/>
          <exon e_start="25914" e_stop="25694"/>
          <exon e_start="24661" e_stop="24489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCGGTGAGATATTATCCCTTCGTCTCTCCTCAATTTCTTCGAAGCTCTAGCTTGTTTCATCTTGAAAAGCACCCTAGGATTCCCTTACTTGTTGACGGTGTTTTGAGTAGAACGAATTTGCAGATCGCACAAAGTTGTTTGCTAGGGGAATAAGGAACTGTAGAATGAGTTAGGTTAAATAAATAGTCCGTTCTTAGGCGTATTGACTTAGGAGTAAAATAATCAAATCTGTTGTGTTTTGTTTCCTATTTTTTAATTTTCTGATTTCCTGACAGAGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACGGTATGGCTGTACATTCTTTCTTCGTAGCCGATGCTTATACTCTGAATCTTTGGTTTATGTATATAAGGAGACTTATTGCCTTCAATGTGCATACTCTCTTAATCTCTTCAAAAAATGCTTTTTTTTGTACAATGATGTCTCGTATTTGAAGTGCATTTCATTGGCAACTGGAACACATTTCAGAGCTGTTTAGTTTTTTGTTCCGCAATATGTTGGGTCATGTTTTGATTTCTGTGTAATAGAAGGATAAATTATAATAGAGGATTAGTGTTCTTAAGACTAATAGAAGTGGGTTCTATTAAAGTTTAAGTGTACTAAAATTGTATTCAATATATTCAATCATGCAAACTGGAAAGTTCTCTGTGACAATGCAAATTGAAAAAAGGACTCAGCATTTTGTGACCCTGCATTAAATTGTTTTATGTGAATGCGGTCTGCTTTTTCCTGGTTGTGTTGGCATATATAGTTAAACATGCTGTACTACCTGATAACATAACATCCTTCTTGCGGCAATAAGCTAATAAGTAGTTCGACAAATCACCACTAGCTGTGCTAGAGCTCATATCTGATGTGGGAAATTTTGTGATTGGTACTGATTTAGTTGAAAGACTTGGGTCCTATCAATTTCAAGTTGTACAAATCTTTCATTAAAACTACATAAATTTTCAGGCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTCGTGAGTTTCTCGTGAATCTCTTATCCCCCCTCCCCCTTGCTCTCTGTTTTCTTTTTCGTTCAGTACTTTCAGTTGCCCTGCCCCCCCCCCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGACTTTTACGTGTATTTCTGATAAATAAAGCTCTCTGTTGTCTTTTTTGTTCTCTGCTTTCAGTTGCCCGTCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGGCTTTTACGTGTATTTCTGATAAAGAATGTTCTGTTAAGTGTAAACTTCCATCCCTTTAAAGAAAAGGATAAGGATTTCAGGGTATCTGCAGATTTTGTGATAGAGGGTTTTGCCAGGTGCATTTCAACAATAATATGGGTCAATCACTTAAAGTACACTACATTCAATATGCATTTTTATGGCATAGCATGGAAAGACCTTTCTAAATGAATTGTTGTTCCATTCTCATGTTTGGCCTGAAAAATGGAAGCTTCTTCTATGATATGGAAAAAATGCCAAGCACCGACTATTGAAATTGCTGCTCATTTGGTTTACAATTGTATTTCTTGTCTCTTTAATTTCAAAATGCCCAATATATAGTACATCCAGACTTTTTGCATATTTAACCAGCTTATGTAGAAAAGATTCCATATTCTACGCCAATAGATACATGACATCCATTAAGTTATCATTCTCAAAAAAAAAAGATTCATGACATCCATGTACTGAATCGTCAAAAGAGCCATGCTAAGAAAGCCAAGCTTATACTTGTTGGCCCATGCCGATCAGAGAAAACACTCCTATACTGTGTCTAGTGGGGAGCTTTTTCATCTCAAAGAATAAGCAGATCTTCATATTTTGCATTTTACATTACCTTGTAGAAAGAAGAAAAAAGATATTGTGCATTGCTTAAATTTATACTGCCAGGATAAAAAGGAAGTGATCAAGACCTGCTTACAGAATTCAACTAGCTATATAGTTGTATTTTAGTTGAATTATTTGTGCTGCTCTTTGGCAAACAGGATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACCC</genome_strand>
        <mrna_strand>TCTCTCAGGCGCTGTTTGTGCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCG................................................................................................................................................................................................................................................................................AGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E249919" ref_strand="+" ref_description="SGN-E249919 [cLEF-57-N6]">
      <seq>tttgaagactagactggttttccggatctctcaggcgctgtttgtcctatcgccgtcgatcaaccctctctacggtccttttccgagggcgtgactaacaatgttgggaggtagagcagtccatcgcttactaggcaggaaatttcaatctgaatccacggcatctccaattttatcatcctttgtttccaaaaaagctcaagaagaatttggttcttttggcatgaagtccttcagaacattagcactcattggagcgggtgtatctggacttctaggttttgcgacagtagcatctgctgatgaggctgaacacggattggaatgcccaagctatccttggcctcatgcaggcattcttagttcatacgatcatgcttcgattcgtcgtggtcaccaggtttatcaacaagtatgtgcatcttgtcattcaatgtcacttgtttcatatcgtgacttggtcggggtggcatatacagaggaagaagtaaaggctatggcagctgagattgaggtggcggatgggcctaatgatgagggtgaaatgtttacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="27315" stop="24190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27015" g_stop="26931" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26930" i_stop="26659" i_length="272">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26658" g_stop="26584" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="160" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26583" i_stop="25915" i_length="669">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25914" g_stop="25694" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="381" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25693" i_stop="24662" i_length="1032">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24661" g_stop="24490" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="553" r_length="172" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E249919" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249919" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27015" e_stop="26931"/>
          <exon e_start="26658" e_stop="26584"/>
          <exon e_start="25914" e_stop="25694"/>
          <exon e_start="24661" e_stop="24490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAAGACTAGACTGGTTTTCCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCGGTGAGATATTATCCCTTCGTCTCTCCTCAATTTCTTCGAAGCTCTAGCTTGTTTCATCTTGAAAAGCACCCTAGGATTCCCTTACTTGTTGACGGTGTTTTGAGTAGAACGAATTTGCAGATCGCACAAAGTTGTTTGCTAGGGGAATAAGGAACTGTAGAATGAGTTAGGTTAAATAAATAGTCCGTTCTTAGGCGTATTGACTTAGGAGTAAAATAATCAAATCTGTTGTGTTTTGTTTCCTATTTTTTAATTTTCTGATTTCCTGACAGAGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACGGTATGGCTGTACATTCTTTCTTCGTAGCCGATGCTTATACTCTGAATCTTTGGTTTATGTATATAAGGAGACTTATTGCCTTCAATGTGCATACTCTCTTAATCTCTTCAAAAAATGCTTTTTTTTGTACAATGATGTCTCGTATTTGAAGTGCATTTCATTGGCAACTGGAACACATTTCAGAGCTGTTTAGTTTTTTGTTCCGCAATATGTTGGGTCATGTTTTGATTTCTGTGTAATAGAAGGATAAATTATAATAGAGGATTAGTGTTCTTAAGACTAATAGAAGTGGGTTCTATTAAAGTTTAAGTGTACTAAAATTGTATTCAATATATTCAATCATGCAAACTGGAAAGTTCTCTGTGACAATGCAAATTGAAAAAAGGACTCAGCATTTTGTGACCCTGCATTAAATTGTTTTATGTGAATGCGGTCTGCTTTTTCCTGGTTGTGTTGGCATATATAGTTAAACATGCTGTACTACCTGATAACATAACATCCTTCTTGCGGCAATAAGCTAATAAGTAGTTCGACAAATCACCACTAGCTGTGCTAGAGCTCATATCTGATGTGGGAAATTTTGTGATTGGTACTGATTTAGTTGAAAGACTTGGGTCCTATCAATTTCAAGTTGTACAAATCTTTCATTAAAACTACATAAATTTTCAGGCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTCGTGAGTTTCTCGTGAATCTCTTATCCCCCCTCCCCCTTGCTCTCTGTTTTCTTTTTCGTTCAGTACTTTCAGTTGCCCTGCCCCCCCCCCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGACTTTTACGTGTATTTCTGATAAATAAAGCTCTCTGTTGTCTTTTTTGTTCTCTGCTTTCAGTTGCCCGTCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGGCTTTTACGTGTATTTCTGATAAAGAATGTTCTGTTAAGTGTAAACTTCCATCCCTTTAAAGAAAAGGATAAGGATTTCAGGGTATCTGCAGATTTTGTGATAGAGGGTTTTGCCAGGTGCATTTCAACAATAATATGGGTCAATCACTTAAAGTACACTACATTCAATATGCATTTTTATGGCATAGCATGGAAAGACCTTTCTAAATGAATTGTTGTTCCATTCTCATGTTTGGCCTGAAAAATGGAAGCTTCTTCTATGATATGGAAAAAATGCCAAGCACCGACTATTGAAATTGCTGCTCATTTGGTTTACAATTGTATTTCTTGTCTCTTTAATTTCAAAATGCCCAATATATAGTACATCCAGACTTTTTGCATATTTAACCAGCTTATGTAGAAAAGATTCCATATTCTACGCCAATAGATACATGACATCCATTAAGTTATCATTCTCAAAAAAAAAAGATTCATGACATCCATGTACTGAATCGTCAAAAGAGCCATGCTAAGAAAGCCAAGCTTATACTTGTTGGCCCATGCCGATCAGAGAAAACACTCCTATACTGTGTCTAGTGGGGAGCTTTTTCATCTCAAAGAATAAGCAGATCTTCATATTTTGCATTTTACATTACCTTGTAGAAAGAAGAAAAAAGATATTGTGCATTGCTTAAATTTATACTGCCAGGATAAAAAGGAAGTGATCAAGACCTGCTTACAGAATTCAACTAGCTATATAGTTGTATTTTAGTTGAATTATTTGTGCTGCTCTTTGGCAAACAGGATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACC</genome_strand>
        <mrna_strand>TTTGAAGACTAGACTGGTTTTCCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCG................................................................................................................................................................................................................................................................................AGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E323194" ref_strand="+" ref_description="SGN-E323194 [cTOB-28-I1]">
      <seq>caaccctctctacggtccttttccgagggcgtgactaacaatgttgggaggtagagcagtccatcgcttactaggcaggaaatttcaatctgaatccacggcatctccaattttatcatcctttgtttccaaaaaagctcaagaagaatttggttcttttggcatgaagtccttcagaacattagcactcattggagcgggtgtatctggacttctaggttttgcgacagtagcatctgctgatgaggctgaacacggattggaatgcccaagctatccttggcctcatgcaggcattcttagttcatacgatcatgcttcgattcgtcgtggtcaccaggtttatcaacaagtatgtgcatcttgtcattcaatgtcacttgtttcatatcgtgacttggtcggggtggcatatacagaggaagaagtaaaggctatggcagctgagattgaggtggcggatgggcctaatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="26967" stop="24207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26955" g_stop="26931" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26930" i_stop="26659" i_length="272">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26658" g_stop="26584" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="100" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26583" i_stop="25915" i_length="669">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25914" g_stop="25694" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="321" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25693" i_stop="24662" i_length="1032">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24661" g_stop="24507" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="476" r_length="155" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E323194" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323194" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26955" e_stop="26931"/>
          <exon e_start="26658" e_stop="26584"/>
          <exon e_start="25914" e_stop="25694"/>
          <exon e_start="24661" e_stop="24507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACCCTCTCTACGGTCCTTTTCCGGTGAGATATTATCCCTTCGTCTCTCCTCAATTTCTTCGAAGCTCTAGCTTGTTTCATCTTGAAAAGCACCCTAGGATTCCCTTACTTGTTGACGGTGTTTTGAGTAGAACGAATTTGCAGATCGCACAAAGTTGTTTGCTAGGGGAATAAGGAACTGTAGAATGAGTTAGGTTAAATAAATAGTCCGTTCTTAGGCGTATTGACTTAGGAGTAAAATAATCAAATCTGTTGTGTTTTGTTTCCTATTTTTTAATTTTCTGATTTCCTGACAGAGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACGGTATGGCTGTACATTCTTTCTTCGTAGCCGATGCTTATACTCTGAATCTTTGGTTTATGTATATAAGGAGACTTATTGCCTTCAATGTGCATACTCTCTTAATCTCTTCAAAAAATGCTTTTTTTTGTACAATGATGTCTCGTATTTGAAGTGCATTTCATTGGCAACTGGAACACATTTCAGAGCTGTTTAGTTTTTTGTTCCGCAATATGTTGGGTCATGTTTTGATTTCTGTGTAATAGAAGGATAAATTATAATAGAGGATTAGTGTTCTTAAGACTAATAGAAGTGGGTTCTATTAAAGTTTAAGTGTACTAAAATTGTATTCAATATATTCAATCATGCAAACTGGAAAGTTCTCTGTGACAATGCAAATTGAAAAAAGGACTCAGCATTTTGTGACCCTGCATTAAATTGTTTTATGTGAATGCGGTCTGCTTTTTCCTGGTTGTGTTGGCATATATAGTTAAACATGCTGTACTACCTGATAACATAACATCCTTCTTGCGGCAATAAGCTAATAAGTAGTTCGACAAATCACCACTAGCTGTGCTAGAGCTCATATCTGATGTGGGAAATTTTGTGATTGGTACTGATTTAGTTGAAAGACTTGGGTCCTATCAATTTCAAGTTGTACAAATCTTTCATTAAAACTACATAAATTTTCAGGCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTCGTGAGTTTCTCGTGAATCTCTTATCCCCCCTCCCCCTTGCTCTCTGTTTTCTTTTTCGTTCAGTACTTTCAGTTGCCCTGCCCCCCCCCCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGACTTTTACGTGTATTTCTGATAAATAAAGCTCTCTGTTGTCTTTTTTGTTCTCTGCTTTCAGTTGCCCGTCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGGCTTTTACGTGTATTTCTGATAAAGAATGTTCTGTTAAGTGTAAACTTCCATCCCTTTAAAGAAAAGGATAAGGATTTCAGGGTATCTGCAGATTTTGTGATAGAGGGTTTTGCCAGGTGCATTTCAACAATAATATGGGTCAATCACTTAAAGTACACTACATTCAATATGCATTTTTATGGCATAGCATGGAAAGACCTTTCTAAATGAATTGTTGTTCCATTCTCATGTTTGGCCTGAAAAATGGAAGCTTCTTCTATGATATGGAAAAAATGCCAAGCACCGACTATTGAAATTGCTGCTCATTTGGTTTACAATTGTATTTCTTGTCTCTTTAATTTCAAAATGCCCAATATATAGTACATCCAGACTTTTTGCATATTTAACCAGCTTATGTAGAAAAGATTCCATATTCTACGCCAATAGATACATGACATCCATTAAGTTATCATTCTCAAAAAAAAAAGATTCATGACATCCATGTACTGAATCGTCAAAAGAGCCATGCTAAGAAAGCCAAGCTTATACTTGTTGGCCCATGCCGATCAGAGAAAACACTCCTATACTGTGTCTAGTGGGGAGCTTTTTCATCTCAAAGAATAAGCAGATCTTCATATTTTGCATTTTACATTACCTTGTAGAAAGAAGAAAAAAGATATTGTGCATTGCTTAAATTTATACTGCCAGGATAAAAAGGAAGTGATCAAGACCTGCTTACAGAATTCAACTAGCTATATAGTTGTATTTTAGTTGAATTATTTGTGCTGCTCTTTGGCAAACAGGATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATG</genome_strand>
        <mrna_strand>CAACCCTCTCTACGGTCCTTTTCCG................................................................................................................................................................................................................................................................................AGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E267524" ref_strand="+" ref_description="SGN-E267524 [cLEI-8-G19]">
      <seq>actagactggttttccggatctctcaggcgctgtttgtcctatcgccgtcgatcaaccctctctacggtccttttccgagggcgtgactaacaatgttgggaggtagagcagtccatcgcttactaggcaggaaatttcaatctgaatccacggcatctccaattttatcatcctttgtttccaaaaaagctcaagaagaatttggttcttttggcatgaagtccttcagaacattagcactcattggagcgggtgtatctggacttctaggttttgcgacagtagcatctgctgatgaggctgaacacggattggaatgcccaagctatccttggcctcatgcaggcattcttagttcatacgatcatgcttcgattcgtcgtggtcaccaggtttatcaacaaagatgtgcatcttgtcattcaatgtcacttgtttcatatcgcgacttggtcggggtggcatatacagaggaagaagtaaaggctatggcagctgagattgatgtggcggatgggcctaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="27308" stop="24209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27008" g_stop="26931" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26930" i_stop="26659" i_length="272">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26658" g_stop="26584" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="153" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26583" i_stop="25915" i_length="669">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25914" g_stop="25694" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="374" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25693" i_stop="24662" i_length="1032">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24661" g_stop="24509" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="527" r_length="153" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E267524" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267524" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27008" e_stop="26931"/>
          <exon e_start="26658" e_stop="26584"/>
          <exon e_start="25914" e_stop="25694"/>
          <exon e_start="24661" e_stop="24509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTAGACTGGTTTTCCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCGGTGAGATATTATCCCTTCGTCTCTCCTCAATTTCTTCGAAGCTCTAGCTTGTTTCATCTTGAAAAGCACCCTAGGATTCCCTTACTTGTTGACGGTGTTTTGAGTAGAACGAATTTGCAGATCGCACAAAGTTGTTTGCTAGGGGAATAAGGAACTGTAGAATGAGTTAGGTTAAATAAATAGTCCGTTCTTAGGCGTATTGACTTAGGAGTAAAATAATCAAATCTGTTGTGTTTTGTTTCCTATTTTTTAATTTTCTGATTTCCTGACAGAGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACGGTATGGCTGTACATTCTTTCTTCGTAGCCGATGCTTATACTCTGAATCTTTGGTTTATGTATATAAGGAGACTTATTGCCTTCAATGTGCATACTCTCTTAATCTCTTCAAAAAATGCTTTTTTTTGTACAATGATGTCTCGTATTTGAAGTGCATTTCATTGGCAACTGGAACACATTTCAGAGCTGTTTAGTTTTTTGTTCCGCAATATGTTGGGTCATGTTTTGATTTCTGTGTAATAGAAGGATAAATTATAATAGAGGATTAGTGTTCTTAAGACTAATAGAAGTGGGTTCTATTAAAGTTTAAGTGTACTAAAATTGTATTCAATATATTCAATCATGCAAACTGGAAAGTTCTCTGTGACAATGCAAATTGAAAAAAGGACTCAGCATTTTGTGACCCTGCATTAAATTGTTTTATGTGAATGCGGTCTGCTTTTTCCTGGTTGTGTTGGCATATATAGTTAAACATGCTGTACTACCTGATAACATAACATCCTTCTTGCGGCAATAAGCTAATAAGTAGTTCGACAAATCACCACTAGCTGTGCTAGAGCTCATATCTGATGTGGGAAATTTTGTGATTGGTACTGATTTAGTTGAAAGACTTGGGTCCTATCAATTTCAAGTTGTACAAATCTTTCATTAAAACTACATAAATTTTCAGGCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTCGTGAGTTTCTCGTGAATCTCTTATCCCCCCTCCCCCTTGCTCTCTGTTTTCTTTTTCGTTCAGTACTTTCAGTTGCCCTGCCCCCCCCCCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGACTTTTACGTGTATTTCTGATAAATAAAGCTCTCTGTTGTCTTTTTTGTTCTCTGCTTTCAGTTGCCCGTCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGGCTTTTACGTGTATTTCTGATAAAGAATGTTCTGTTAAGTGTAAACTTCCATCCCTTTAAAGAAAAGGATAAGGATTTCAGGGTATCTGCAGATTTTGTGATAGAGGGTTTTGCCAGGTGCATTTCAACAATAATATGGGTCAATCACTTAAAGTACACTACATTCAATATGCATTTTTATGGCATAGCATGGAAAGACCTTTCTAAATGAATTGTTGTTCCATTCTCATGTTTGGCCTGAAAAATGGAAGCTTCTTCTATGATATGGAAAAAATGCCAAGCACCGACTATTGAAATTGCTGCTCATTTGGTTTACAATTGTATTTCTTGTCTCTTTAATTTCAAAATGCCCAATATATAGTACATCCAGACTTTTTGCATATTTAACCAGCTTATGTAGAAAAGATTCCATATTCTACGCCAATAGATACATGACATCCATTAAGTTATCATTCTCAAAAAAAAAAGATTCATGACATCCATGTACTGAATCGTCAAAAGAGCCATGCTAAGAAAGCCAAGCTTATACTTGTTGGCCCATGCCGATCAGAGAAAACACTCCTATACTGTGTCTAGTGGGGAGCTTTTTCATCTCAAAGAATAAGCAGATCTTCATATTTTGCATTTTACATTACCTTGTAGAAAGAAGAAAAAAGATATTGTGCATTGCTTAAATTTATACTGCCAGGATAAAAAGGAAGTGATCAAGACCTGCTTACAGAATTCAACTAGCTATATAGTTGTATTTTAGTTGAATTATTTGTGCTGCTCTTTGGCAAACAGGATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGA</genome_strand>
        <mrna_strand>ACTAGACTGGTTTTCCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCG................................................................................................................................................................................................................................................................................AGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCGTCGTGGTCACCAGGTTTATCAACAAAGATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGCGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGAGATTGATGTGGCGGATGGGCCTAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E310602" ref_strand="+" ref_description="SGN-E310602 [cLEZ-19-P16]">
      <seq>ttttccggatctctcaggcgctgtttgtcctatcgccgtcgatcaaccctctctacggtccttttccgagggcgtgactaacaatgttgggaggtagagcagtccatcgcttactaggcaggaaatttcaatctgaatccacggcatctccaattttatcatcctttgtttccaaaaaagctcaagaagaatttggttcttttggcatgaagtccttcagaacattagcactcattggagcgggtgtatctggacttctaggttttgcgacagtagcatctgctgatgaggctgaacacggattggaatgcccaagctatccttggcctcatgcaggcattcttagttcatacgatcatgcttcgattcgtcgtggtcaccaggtttatcaacaagtatgtgcatcttgtcattcaatgtcacttgtttcatatcgtgacttggtcggggtggcatatacagaggaagaagtaaaggctatggcagctgagattgaggtggcggatgggcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="27298" stop="24214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26998" g_stop="26931" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26930" i_stop="26659" i_length="272">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26658" g_stop="26584" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="143" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26583" i_stop="25915" i_length="669">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25914" g_stop="25694" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="364" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25693" i_stop="24662" i_length="1032">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24661" g_stop="24514" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="512" r_length="148" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E310602" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310602" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26998" e_stop="26931"/>
          <exon e_start="26658" e_stop="26584"/>
          <exon e_start="25914" e_stop="25694"/>
          <exon e_start="24661" e_stop="24514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCGGTGAGATATTATCCCTTCGTCTCTCCTCAATTTCTTCGAAGCTCTAGCTTGTTTCATCTTGAAAAGCACCCTAGGATTCCCTTACTTGTTGACGGTGTTTTGAGTAGAACGAATTTGCAGATCGCACAAAGTTGTTTGCTAGGGGAATAAGGAACTGTAGAATGAGTTAGGTTAAATAAATAGTCCGTTCTTAGGCGTATTGACTTAGGAGTAAAATAATCAAATCTGTTGTGTTTTGTTTCCTATTTTTTAATTTTCTGATTTCCTGACAGAGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACGGTATGGCTGTACATTCTTTCTTCGTAGCCGATGCTTATACTCTGAATCTTTGGTTTATGTATATAAGGAGACTTATTGCCTTCAATGTGCATACTCTCTTAATCTCTTCAAAAAATGCTTTTTTTTGTACAATGATGTCTCGTATTTGAAGTGCATTTCATTGGCAACTGGAACACATTTCAGAGCTGTTTAGTTTTTTGTTCCGCAATATGTTGGGTCATGTTTTGATTTCTGTGTAATAGAAGGATAAATTATAATAGAGGATTAGTGTTCTTAAGACTAATAGAAGTGGGTTCTATTAAAGTTTAAGTGTACTAAAATTGTATTCAATATATTCAATCATGCAAACTGGAAAGTTCTCTGTGACAATGCAAATTGAAAAAAGGACTCAGCATTTTGTGACCCTGCATTAAATTGTTTTATGTGAATGCGGTCTGCTTTTTCCTGGTTGTGTTGGCATATATAGTTAAACATGCTGTACTACCTGATAACATAACATCCTTCTTGCGGCAATAAGCTAATAAGTAGTTCGACAAATCACCACTAGCTGTGCTAGAGCTCATATCTGATGTGGGAAATTTTGTGATTGGTACTGATTTAGTTGAAAGACTTGGGTCCTATCAATTTCAAGTTGTACAAATCTTTCATTAAAACTACATAAATTTTCAGGCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTCGTGAGTTTCTCGTGAATCTCTTATCCCCCCTCCCCCTTGCTCTCTGTTTTCTTTTTCGTTCAGTACTTTCAGTTGCCCTGCCCCCCCCCCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGACTTTTACGTGTATTTCTGATAAATAAAGCTCTCTGTTGTCTTTTTTGTTCTCTGCTTTCAGTTGCCCGTCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGGCTTTTACGTGTATTTCTGATAAAGAATGTTCTGTTAAGTGTAAACTTCCATCCCTTTAAAGAAAAGGATAAGGATTTCAGGGTATCTGCAGATTTTGTGATAGAGGGTTTTGCCAGGTGCATTTCAACAATAATATGGGTCAATCACTTAAAGTACACTACATTCAATATGCATTTTTATGGCATAGCATGGAAAGACCTTTCTAAATGAATTGTTGTTCCATTCTCATGTTTGGCCTGAAAAATGGAAGCTTCTTCTATGATATGGAAAAAATGCCAAGCACCGACTATTGAAATTGCTGCTCATTTGGTTTACAATTGTATTTCTTGTCTCTTTAATTTCAAAATGCCCAATATATAGTACATCCAGACTTTTTGCATATTTAACCAGCTTATGTAGAAAAGATTCCATATTCTACGCCAATAGATACATGACATCCATTAAGTTATCATTCTCAAAAAAAAAAGATTCATGACATCCATGTACTGAATCGTCAAAAGAGCCATGCTAAGAAAGCCAAGCTTATACTTGTTGGCCCATGCCGATCAGAGAAAACACTCCTATACTGTGTCTAGTGGGGAGCTTTTTCATCTCAAAGAATAAGCAGATCTTCATATTTTGCATTTTACATTACCTTGTAGAAAGAAGAAAAAAGATATTGTGCATTGCTTAAATTTATACTGCCAGGATAAAAAGGAAGTGATCAAGACCTGCTTACAGAATTCAACTAGCTATATAGTTGTATTTTAGTTGAATTATTTGTGCTGCTCTTTGGCAAACAGGATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGAGATTGAGGTGGCGGATGGGCCT</genome_strand>
        <mrna_strand>TTTTCCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCG................................................................................................................................................................................................................................................................................AGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGAGATTGAGGTGGCGGATGGGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E266259" ref_strand="+" ref_description="SGN-E266259 [cLEI-3-F3]">
      <seq>tctctcaggcgctgtttgtcctatcgccgtcgatcaaccctctctacggtccttttccgagggcgtgactaacaatgttgggaggtagagcagtccatcgcttactaggcaggaaatttcaatctgaatccacggcatctccaattttatcatcctttgtttccaaaaaagctcaagaagaatttggttcttttggcatgaagtccttcagaacattagcactcattggagcgggtgtatctggacttctaggttttgcgacagtagcatctgctgatgaggctgaacacggattggaatgcccaagctatccttggcctcatgcaggcattcttagttcatacgatcatgcttcgattcgtcgtggtcaccaggtttatcnaacaagttgtgcatcttgtcattcaatgtcacttgtttcatatcgtgacttggtcggggtggcatatacagaggaagaagtaaaggctatggcagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="27289" stop="24238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26989" g_stop="26931" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26930" i_stop="26659" i_length="272">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26658" g_stop="26584" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="134" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26583" i_stop="25915" i_length="669">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25914" g_stop="25694" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="355" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25693" i_stop="24662" i_length="1032">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24661" g_stop="24538" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="479" r_length="124" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E266259" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266259" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26989" e_stop="26931"/>
          <exon e_start="26658" e_stop="26584"/>
          <exon e_start="25914" e_stop="25694"/>
          <exon e_start="24661" e_stop="24538"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCGGTGAGATATTATCCCTTCGTCTCTCCTCAATTTCTTCGAAGCTCTAGCTTGTTTCATCTTGAAAAGCACCCTAGGATTCCCTTACTTGTTGACGGTGTTTTGAGTAGAACGAATTTGCAGATCGCACAAAGTTGTTTGCTAGGGGAATAAGGAACTGTAGAATGAGTTAGGTTAAATAAATAGTCCGTTCTTAGGCGTATTGACTTAGGAGTAAAATAATCAAATCTGTTGTGTTTTGTTTCCTATTTTTTAATTTTCTGATTTCCTGACAGAGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACGGTATGGCTGTACATTCTTTCTTCGTAGCCGATGCTTATACTCTGAATCTTTGGTTTATGTATATAAGGAGACTTATTGCCTTCAATGTGCATACTCTCTTAATCTCTTCAAAAAATGCTTTTTTTTGTACAATGATGTCTCGTATTTGAAGTGCATTTCATTGGCAACTGGAACACATTTCAGAGCTGTTTAGTTTTTTGTTCCGCAATATGTTGGGTCATGTTTTGATTTCTGTGTAATAGAAGGATAAATTATAATAGAGGATTAGTGTTCTTAAGACTAATAGAAGTGGGTTCTATTAAAGTTTAAGTGTACTAAAATTGTATTCAATATATTCAATCATGCAAACTGGAAAGTTCTCTGTGACAATGCAAATTGAAAAAAGGACTCAGCATTTTGTGACCCTGCATTAAATTGTTTTATGTGAATGCGGTCTGCTTTTTCCTGGTTGTGTTGGCATATATAGTTAAACATGCTGTACTACCTGATAACATAACATCCTTCTTGCGGCAATAAGCTAATAAGTAGTTCGACAAATCACCACTAGCTGTGCTAGAGCTCATATCTGATGTGGGAAATTTTGTGATTGGTACTGATTTAGTTGAAAGACTTGGGTCCTATCAATTTCAAGTTGTACAAATCTTTCATTAAAACTACATAAATTTTCAGGCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTCGTGAGTTTCTCGTGAATCTCTTATCCCCCCTCCCCCTTGCTCTCTGTTTTCTTTTTCGTTCAGTACTTTCAGTTGCCCTGCCCCCCCCCCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGACTTTTACGTGTATTTCTGATAAATAAAGCTCTCTGTTGTCTTTTTTGTTCTCTGCTTTCAGTTGCCCGTCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGGCTTTTACGTGTATTTCTGATAAAGAATGTTCTGTTAAGTGTAAACTTCCATCCCTTTAAAGAAAAGGATAAGGATTTCAGGGTATCTGCAGATTTTGTGATAGAGGGTTTTGCCAGGTGCATTTCAACAATAATATGGGTCAATCACTTAAAGTACACTACATTCAATATGCATTTTTATGGCATAGCATGGAAAGACCTTTCTAAATGAATTGTTGTTCCATTCTCATGTTTGGCCTGAAAAATGGAAGCTTCTTCTATGATATGGAAAAAATGCCAAGCACCGACTATTGAAATTGCTGCTCATTTGGTTTACAATTGTATTTCTTGTCTCTTTAATTTCAAAATGCCCAATATATAGTACATCCAGACTTTTTGCATATTTAACCAGCTTATGTAGAAAAGATTCCATATTCTACGCCAATAGATACATGACATCCATTAAGTTATCATTCTCAAAAAAAAAAGATTCATGACATCCATGTACTGAATCGTCAAAAGAGCCATGCTAAGAAAGCCAAGCTTATACTTGTTGGCCCATGCCGATCAGAGAAAACACTCCTATACTGTGTCTAGTGGGGAGCTTTTTCATCTCAAAGAATAAGCAGATCTTCATATTTTGCATTTTACATTACCTTGTAGAAAGAAGAAAAAAGATATTGTGCATTGCTTAAATTTATACTGCCAGGATAAAAAGGAAGTGATCAAGACCTGCTTACAGAATTCAACTAGCTATATAGTTGTATTTTAGTTGAATTATTTGTGCTGCTCTTTGGCAAACAGGATTCGTCGTGGTCACCAGGTTTATC-AACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCT</genome_strand>
        <mrna_strand>TCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCG................................................................................................................................................................................................................................................................................AGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCGTCGTGGTCACCAGGTTTATCNAACAAGT-TGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E291175" ref_strand="+" ref_description="SGN-E291175 [cLET-8-L6]">
      <seq>ttttccggatctctcaggcgctgtttgtcctatcgccgtcgatcaaccctctctacggtccttttccgagggcgtgactaacaatgttgggaggtagagcagtccatcgcttactaggcaggaaatttcaatctgaatccacggcatctccaattttatcatcctttgtttccaaaaaagctcaagaagaatttggttcttttggcatgaagtccttcagaacattagcactcattggagcgggtgtatctggacttctaggttttgcgacagtagcatctgctgatgaggctgaacacggattggaatgcccaagctatccttggcctcatgcaggcattcttagttcatacgatcatgcttcgattcgtcgtggtcaccaggtttatcaacaagtatgtgcatcttgtcattcaatgtcacttgtttcatatcgtgacttggtcggggtggcatatacagaggaagaagtaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="27298" stop="24250"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26998" g_stop="26931" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26930" i_stop="26659" i_length="272">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26658" g_stop="26584" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="143" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26583" i_stop="25915" i_length="669">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25914" g_stop="25694" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="364" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25693" i_stop="24662" i_length="1032">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24661" g_stop="24550" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="476" r_length="112" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E291175" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291175" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26998" e_stop="26931"/>
          <exon e_start="26658" e_stop="26584"/>
          <exon e_start="25914" e_stop="25694"/>
          <exon e_start="24661" e_stop="24550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCGGTGAGATATTATCCCTTCGTCTCTCCTCAATTTCTTCGAAGCTCTAGCTTGTTTCATCTTGAAAAGCACCCTAGGATTCCCTTACTTGTTGACGGTGTTTTGAGTAGAACGAATTTGCAGATCGCACAAAGTTGTTTGCTAGGGGAATAAGGAACTGTAGAATGAGTTAGGTTAAATAAATAGTCCGTTCTTAGGCGTATTGACTTAGGAGTAAAATAATCAAATCTGTTGTGTTTTGTTTCCTATTTTTTAATTTTCTGATTTCCTGACAGAGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACGGTATGGCTGTACATTCTTTCTTCGTAGCCGATGCTTATACTCTGAATCTTTGGTTTATGTATATAAGGAGACTTATTGCCTTCAATGTGCATACTCTCTTAATCTCTTCAAAAAATGCTTTTTTTTGTACAATGATGTCTCGTATTTGAAGTGCATTTCATTGGCAACTGGAACACATTTCAGAGCTGTTTAGTTTTTTGTTCCGCAATATGTTGGGTCATGTTTTGATTTCTGTGTAATAGAAGGATAAATTATAATAGAGGATTAGTGTTCTTAAGACTAATAGAAGTGGGTTCTATTAAAGTTTAAGTGTACTAAAATTGTATTCAATATATTCAATCATGCAAACTGGAAAGTTCTCTGTGACAATGCAAATTGAAAAAAGGACTCAGCATTTTGTGACCCTGCATTAAATTGTTTTATGTGAATGCGGTCTGCTTTTTCCTGGTTGTGTTGGCATATATAGTTAAACATGCTGTACTACCTGATAACATAACATCCTTCTTGCGGCAATAAGCTAATAAGTAGTTCGACAAATCACCACTAGCTGTGCTAGAGCTCATATCTGATGTGGGAAATTTTGTGATTGGTACTGATTTAGTTGAAAGACTTGGGTCCTATCAATTTCAAGTTGTACAAATCTTTCATTAAAACTACATAAATTTTCAGGCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTCGTGAGTTTCTCGTGAATCTCTTATCCCCCCTCCCCCTTGCTCTCTGTTTTCTTTTTCGTTCAGTACTTTCAGTTGCCCTGCCCCCCCCCCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGACTTTTACGTGTATTTCTGATAAATAAAGCTCTCTGTTGTCTTTTTTGTTCTCTGCTTTCAGTTGCCCGTCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGGCTTTTACGTGTATTTCTGATAAAGAATGTTCTGTTAAGTGTAAACTTCCATCCCTTTAAAGAAAAGGATAAGGATTTCAGGGTATCTGCAGATTTTGTGATAGAGGGTTTTGCCAGGTGCATTTCAACAATAATATGGGTCAATCACTTAAAGTACACTACATTCAATATGCATTTTTATGGCATAGCATGGAAAGACCTTTCTAAATGAATTGTTGTTCCATTCTCATGTTTGGCCTGAAAAATGGAAGCTTCTTCTATGATATGGAAAAAATGCCAAGCACCGACTATTGAAATTGCTGCTCATTTGGTTTACAATTGTATTTCTTGTCTCTTTAATTTCAAAATGCCCAATATATAGTACATCCAGACTTTTTGCATATTTAACCAGCTTATGTAGAAAAGATTCCATATTCTACGCCAATAGATACATGACATCCATTAAGTTATCATTCTCAAAAAAAAAAGATTCATGACATCCATGTACTGAATCGTCAAAAGAGCCATGCTAAGAAAGCCAAGCTTATACTTGTTGGCCCATGCCGATCAGAGAAAACACTCCTATACTGTGTCTAGTGGGGAGCTTTTTCATCTCAAAGAATAAGCAGATCTTCATATTTTGCATTTTACATTACCTTGTAGAAAGAAGAAAAAAGATATTGTGCATTGCTTAAATTTATACTGCCAGGATAAAAAGGAAGTGATCAAGACCTGCTTACAGAATTCAACTAGCTATATAGTTGTATTTTAGTTGAATTATTTGTGCTGCTCTTTGGCAAACAGGATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAG</genome_strand>
        <mrna_strand>TTTTCCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCG................................................................................................................................................................................................................................................................................AGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E325150" ref_strand="+" ref_description="SGN-E325150 [cTOC-13-J23]">
      <seq>ttgtttccaaaaaagctcaagaagaatttggttcttttggcatgaagtccttcagaacattagcactcattggagcgggtgtatctggacttctaggttttgcgacagtagcatctgctgatgaggctgaacacggattggaatgcccaagctatccttggcctcatgcaggcattcttagttcatacgatcatgcttcgattcgtcgtggtcaccaggtttatcaacaagtatgtgcatcttgtcattcaatgtcacttgtttcatatcgtgacttggtcggggtggcatatacagaggaagaagtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="26192" stop="24252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25892" g_stop="25694" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25693" i_stop="24662" i_length="1032">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24661" g_stop="24552" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="309" r_length="110" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E325150" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>309</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25892" e_stop="25694"/>
          <exon e_start="24661" e_stop="24552"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTCGTGAGTTTCTCGTGAATCTCTTATCCCCCCTCCCCCTTGCTCTCTGTTTTCTTTTTCGTTCAGTACTTTCAGTTGCCCTGCCCCCCCCCCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGACTTTTACGTGTATTTCTGATAAATAAAGCTCTCTGTTGTCTTTTTTGTTCTCTGCTTTCAGTTGCCCGTCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGGCTTTTACGTGTATTTCTGATAAAGAATGTTCTGTTAAGTGTAAACTTCCATCCCTTTAAAGAAAAGGATAAGGATTTCAGGGTATCTGCAGATTTTGTGATAGAGGGTTTTGCCAGGTGCATTTCAACAATAATATGGGTCAATCACTTAAAGTACACTACATTCAATATGCATTTTTATGGCATAGCATGGAAAGACCTTTCTAAATGAATTGTTGTTCCATTCTCATGTTTGGCCTGAAAAATGGAAGCTTCTTCTATGATATGGAAAAAATGCCAAGCACCGACTATTGAAATTGCTGCTCATTTGGTTTACAATTGTATTTCTTGTCTCTTTAATTTCAAAATGCCCAATATATAGTACATCCAGACTTTTTGCATATTTAACCAGCTTATGTAGAAAAGATTCCATATTCTACGCCAATAGATACATGACATCCATTAAGTTATCATTCTCAAAAAAAAAAGATTCATGACATCCATGTACTGAATCGTCAAAAGAGCCATGCTAAGAAAGCCAAGCTTATACTTGTTGGCCCATGCCGATCAGAGAAAACACTCCTATACTGTGTCTAGTGGGGAGCTTTTTCATCTCAAAGAATAAGCAGATCTTCATATTTTGCATTTTACATTACCTTGTAGAAAGAAGAAAAAAGATATTGTGCATTGCTTAAATTTATACTGCCAGGATAAAAAGGAAGTGATCAAGACCTGCTTACAGAATTCAACTAGCTATATAGTTGTATTTTAGTTGAATTATTTGTGCTGCTCTTTGGCAAACAGGATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAA</genome_strand>
        <mrna_strand>TTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E255487" ref_strand="+" ref_description="SGN-E255487 [cLEG-30-K16]">
      <seq>caaaacctcctcctcttagaattttctgaatagttttgaagactagactggttgtccggatctctcaggcgctgtttgtcctatcgccgtcgatcaaccctctctacggtccttttccgagggcgtgactaacaatgttgggaggtagagcagtccatcgcttactaggcaggaaatttcaatctgaatccacggcatctccaattttatcatcctttgtttccaaaaaagctcaagaagaatttggttcttttggcatgaagtccttcagaacattagcactcattggagcgggtgtatctggacttctaggttttgcgacagtagcatctgctgatgaggctgaacacggattggaatgcccaagctatccttggcctcatgcaggcattcttagttcatacgatcatgcttcgattcgtcgtggtcaccaggtttatcaacaagtatgtgcatcttgtcattcaatgtcacttgtttcatatcgtgacttggtcggggtggcatatacagaggaagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="27349" stop="24255"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27049" g_stop="26931" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26930" i_stop="26659" i_length="272">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26658" g_stop="26584" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="194" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26583" i_stop="25915" i_length="669">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25914" g_stop="25694" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="415" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25693" i_stop="24662" i_length="1032">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24661" g_stop="24555" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="522" r_length="107" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E255487" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255487" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27049" e_stop="26931"/>
          <exon e_start="26658" e_stop="26584"/>
          <exon e_start="25914" e_stop="25694"/>
          <exon e_start="24661" e_stop="24555"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACCTCCTCCTCTTAGAATTTTCTGAATAGTTTTGAAGACTAGACTGGTTTTCCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCGGTGAGATATTATCCCTTCGTCTCTCCTCAATTTCTTCGAAGCTCTAGCTTGTTTCATCTTGAAAAGCACCCTAGGATTCCCTTACTTGTTGACGGTGTTTTGAGTAGAACGAATTTGCAGATCGCACAAAGTTGTTTGCTAGGGGAATAAGGAACTGTAGAATGAGTTAGGTTAAATAAATAGTCCGTTCTTAGGCGTATTGACTTAGGAGTAAAATAATCAAATCTGTTGTGTTTTGTTTCCTATTTTTTAATTTTCTGATTTCCTGACAGAGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACGGTATGGCTGTACATTCTTTCTTCGTAGCCGATGCTTATACTCTGAATCTTTGGTTTATGTATATAAGGAGACTTATTGCCTTCAATGTGCATACTCTCTTAATCTCTTCAAAAAATGCTTTTTTTTGTACAATGATGTCTCGTATTTGAAGTGCATTTCATTGGCAACTGGAACACATTTCAGAGCTGTTTAGTTTTTTGTTCCGCAATATGTTGGGTCATGTTTTGATTTCTGTGTAATAGAAGGATAAATTATAATAGAGGATTAGTGTTCTTAAGACTAATAGAAGTGGGTTCTATTAAAGTTTAAGTGTACTAAAATTGTATTCAATATATTCAATCATGCAAACTGGAAAGTTCTCTGTGACAATGCAAATTGAAAAAAGGACTCAGCATTTTGTGACCCTGCATTAAATTGTTTTATGTGAATGCGGTCTGCTTTTTCCTGGTTGTGTTGGCATATATAGTTAAACATGCTGTACTACCTGATAACATAACATCCTTCTTGCGGCAATAAGCTAATAAGTAGTTCGACAAATCACCACTAGCTGTGCTAGAGCTCATATCTGATGTGGGAAATTTTGTGATTGGTACTGATTTAGTTGAAAGACTTGGGTCCTATCAATTTCAAGTTGTACAAATCTTTCATTAAAACTACATAAATTTTCAGGCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTCGTGAGTTTCTCGTGAATCTCTTATCCCCCCTCCCCCTTGCTCTCTGTTTTCTTTTTCGTTCAGTACTTTCAGTTGCCCTGCCCCCCCCCCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGACTTTTACGTGTATTTCTGATAAATAAAGCTCTCTGTTGTCTTTTTTGTTCTCTGCTTTCAGTTGCCCGTCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGGCTTTTACGTGTATTTCTGATAAAGAATGTTCTGTTAAGTGTAAACTTCCATCCCTTTAAAGAAAAGGATAAGGATTTCAGGGTATCTGCAGATTTTGTGATAGAGGGTTTTGCCAGGTGCATTTCAACAATAATATGGGTCAATCACTTAAAGTACACTACATTCAATATGCATTTTTATGGCATAGCATGGAAAGACCTTTCTAAATGAATTGTTGTTCCATTCTCATGTTTGGCCTGAAAAATGGAAGCTTCTTCTATGATATGGAAAAAATGCCAAGCACCGACTATTGAAATTGCTGCTCATTTGGTTTACAATTGTATTTCTTGTCTCTTTAATTTCAAAATGCCCAATATATAGTACATCCAGACTTTTTGCATATTTAACCAGCTTATGTAGAAAAGATTCCATATTCTACGCCAATAGATACATGACATCCATTAAGTTATCATTCTCAAAAAAAAAAGATTCATGACATCCATGTACTGAATCGTCAAAAGAGCCATGCTAAGAAAGCCAAGCTTATACTTGTTGGCCCATGCCGATCAGAGAAAACACTCCTATACTGTGTCTAGTGGGGAGCTTTTTCATCTCAAAGAATAAGCAGATCTTCATATTTTGCATTTTACATTACCTTGTAGAAAGAAGAAAAAAGATATTGTGCATTGCTTAAATTTATACTGCCAGGATAAAAAGGAAGTGATCAAGACCTGCTTACAGAATTCAACTAGCTATATAGTTGTATTTTAGTTGAATTATTTGTGCTGCTCTTTGGCAAACAGGATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAG</genome_strand>
        <mrna_strand>CAAAACCTCCTCCTCTTAGAATTTTCTGAATAGTTTTGAAGACTAGACTGGTTGTCCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCG................................................................................................................................................................................................................................................................................AGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E325057" ref_strand="+" ref_description="SGN-E325057 [cTOC-13-L19]">
      <seq>gaatttggttcttttggcatgaagtccttcagaacattagcactcattggagcgggtgtatctggacttctaggttttgcgacagtagcatctgctgatgaggctgaacacggattggaatgcccaagctatccttggcctcatgcaggcattcttagttcatacgatcatgcttcgattcgtcgtggtcaccaggtttatcaacaagtatgtgcatcttgtcattcaatgtcacttgtttcatatcgtgacttggtcggggtggcatatacagaggaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="26169" stop="24257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25869" g_stop="25694" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25693" i_stop="24662" i_length="1032">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24661" g_stop="24557" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="281" r_length="105" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E325057" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>281</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325057" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25869" e_stop="25694"/>
          <exon e_start="24661" e_stop="24557"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTCGTGAGTTTCTCGTGAATCTCTTATCCCCCCTCCCCCTTGCTCTCTGTTTTCTTTTTCGTTCAGTACTTTCAGTTGCCCTGCCCCCCCCCCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGACTTTTACGTGTATTTCTGATAAATAAAGCTCTCTGTTGTCTTTTTTGTTCTCTGCTTTCAGTTGCCCGTCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGGCTTTTACGTGTATTTCTGATAAAGAATGTTCTGTTAAGTGTAAACTTCCATCCCTTTAAAGAAAAGGATAAGGATTTCAGGGTATCTGCAGATTTTGTGATAGAGGGTTTTGCCAGGTGCATTTCAACAATAATATGGGTCAATCACTTAAAGTACACTACATTCAATATGCATTTTTATGGCATAGCATGGAAAGACCTTTCTAAATGAATTGTTGTTCCATTCTCATGTTTGGCCTGAAAAATGGAAGCTTCTTCTATGATATGGAAAAAATGCCAAGCACCGACTATTGAAATTGCTGCTCATTTGGTTTACAATTGTATTTCTTGTCTCTTTAATTTCAAAATGCCCAATATATAGTACATCCAGACTTTTTGCATATTTAACCAGCTTATGTAGAAAAGATTCCATATTCTACGCCAATAGATACATGACATCCATTAAGTTATCATTCTCAAAAAAAAAAGATTCATGACATCCATGTACTGAATCGTCAAAAGAGCCATGCTAAGAAAGCCAAGCTTATACTTGTTGGCCCATGCCGATCAGAGAAAACACTCCTATACTGTGTCTAGTGGGGAGCTTTTTCATCTCAAAGAATAAGCAGATCTTCATATTTTGCATTTTACATTACCTTGTAGAAAGAAGAAAAAAGATATTGTGCATTGCTTAAATTTATACTGCCAGGATAAAAAGGAAGTGATCAAGACCTGCTTACAGAATTCAACTAGCTATATAGTTGTATTTTAGTTGAATTATTTGTGCTGCTCTTTGGCAAACAGGATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGA</genome_strand>
        <mrna_strand>GAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E325143" ref_strand="+" ref_description="SGN-E325143 [cTOC-13-H23]">
      <seq>tccttcagaacattancacgcattggagcgggtgtatctggacttctaggttttgcgacagtagcatctgctgatgaggctgaacacggattggaatgcccaagctatccttggcctcatgcaagcattcttagttcatacgatcatgcttcgattcgtcgtggtcaccaggtttatcaacaagtatgtgcatcttgtcattcaatgtcacttgtttcatatcgtgacttggtcggggtggcatatacagaggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="26145" stop="24259"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25845" g_stop="25694" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25693" i_stop="24662" i_length="1032">
            <donor d_prob="0.887" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24661" g_stop="24559" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="255" r_length="103" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E325143" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>255</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325143" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25845" e_stop="25694"/>
          <exon e_start="24661" e_stop="24559"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTCGTGAGTTTCTCGTGAATCTCTTATCCCCCCTCCCCCTTGCTCTCTGTTTTCTTTTTCGTTCAGTACTTTCAGTTGCCCTGCCCCCCCCCCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGACTTTTACGTGTATTTCTGATAAATAAAGCTCTCTGTTGTCTTTTTTGTTCTCTGCTTTCAGTTGCCCGTCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGGCTTTTACGTGTATTTCTGATAAAGAATGTTCTGTTAAGTGTAAACTTCCATCCCTTTAAAGAAAAGGATAAGGATTTCAGGGTATCTGCAGATTTTGTGATAGAGGGTTTTGCCAGGTGCATTTCAACAATAATATGGGTCAATCACTTAAAGTACACTACATTCAATATGCATTTTTATGGCATAGCATGGAAAGACCTTTCTAAATGAATTGTTGTTCCATTCTCATGTTTGGCCTGAAAAATGGAAGCTTCTTCTATGATATGGAAAAAATGCCAAGCACCGACTATTGAAATTGCTGCTCATTTGGTTTACAATTGTATTTCTTGTCTCTTTAATTTCAAAATGCCCAATATATAGTACATCCAGACTTTTTGCATATTTAACCAGCTTATGTAGAAAAGATTCCATATTCTACGCCAATAGATACATGACATCCATTAAGTTATCATTCTCAAAAAAAAAAGATTCATGACATCCATGTACTGAATCGTCAAAAGAGCCATGCTAAGAAAGCCAAGCTTATACTTGTTGGCCCATGCCGATCAGAGAAAACACTCCTATACTGTGTCTAGTGGGGAGCTTTTTCATCTCAAAGAATAAGCAGATCTTCATATTTTGCATTTTACATTACCTTGTAGAAAGAAGAAAAAAGATATTGTGCATTGCTTAAATTTATACTGCCAGGATAAAAAGGAAGTGATCAAGACCTGCTTACAGAATTCAACTAGCTATATAGTTGTATTTTAGTTGAATTATTTGTGCTGCTCTTTGGCAAACAGGATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAA</genome_strand>
        <mrna_strand>TCCTTCAGAACATTANCACGCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAAGCATTCTTAGTTCATACGATCATGCTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E323830" ref_strand="+" ref_description="SGN-E323830 [cTOC-5-F5]">
      <seq>ttttccggatctctcaggcgctgtttgtcctatcgccgtcgatcaaccctctctacggtccttttccgagggcgtgactaacaatgttgggaggtagagcagtccatcgcttactaggcaggaaatttcaatctgaatccacggcatctccaattttatcatcctttgtttccaaaaaagctcaagaagaatttggttcttttggcatgaagtccttcagaacattagcactcattggagcgggtgtatctggacttctaggttttgcgacagtagcatctgctgatgaggctgaacacggattggaatgcccaagctatccttggcctcatgcaggcattcttagttcatacgatcatgcttcgattcgtcgtggtcaccaggtttatcaacaagtatgtgcatcttgtcattcaatgtcacttgtttcatatcgtgacttggtcggggtggcatatacaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="27298" stop="24263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26998" g_stop="26931" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26930" i_stop="26659" i_length="272">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26658" g_stop="26584" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="143" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26583" i_stop="25915" i_length="669">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25914" g_stop="25694" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="364" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25693" i_stop="24662" i_length="1032">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24661" g_stop="24563" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="463" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E323830" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26998" e_stop="26931"/>
          <exon e_start="26658" e_stop="26584"/>
          <exon e_start="25914" e_stop="25694"/>
          <exon e_start="24661" e_stop="24563"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCGGTGAGATATTATCCCTTCGTCTCTCCTCAATTTCTTCGAAGCTCTAGCTTGTTTCATCTTGAAAAGCACCCTAGGATTCCCTTACTTGTTGACGGTGTTTTGAGTAGAACGAATTTGCAGATCGCACAAAGTTGTTTGCTAGGGGAATAAGGAACTGTAGAATGAGTTAGGTTAAATAAATAGTCCGTTCTTAGGCGTATTGACTTAGGAGTAAAATAATCAAATCTGTTGTGTTTTGTTTCCTATTTTTTAATTTTCTGATTTCCTGACAGAGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACGGTATGGCTGTACATTCTTTCTTCGTAGCCGATGCTTATACTCTGAATCTTTGGTTTATGTATATAAGGAGACTTATTGCCTTCAATGTGCATACTCTCTTAATCTCTTCAAAAAATGCTTTTTTTTGTACAATGATGTCTCGTATTTGAAGTGCATTTCATTGGCAACTGGAACACATTTCAGAGCTGTTTAGTTTTTTGTTCCGCAATATGTTGGGTCATGTTTTGATTTCTGTGTAATAGAAGGATAAATTATAATAGAGGATTAGTGTTCTTAAGACTAATAGAAGTGGGTTCTATTAAAGTTTAAGTGTACTAAAATTGTATTCAATATATTCAATCATGCAAACTGGAAAGTTCTCTGTGACAATGCAAATTGAAAAAAGGACTCAGCATTTTGTGACCCTGCATTAAATTGTTTTATGTGAATGCGGTCTGCTTTTTCCTGGTTGTGTTGGCATATATAGTTAAACATGCTGTACTACCTGATAACATAACATCCTTCTTGCGGCAATAAGCTAATAAGTAGTTCGACAAATCACCACTAGCTGTGCTAGAGCTCATATCTGATGTGGGAAATTTTGTGATTGGTACTGATTTAGTTGAAAGACTTGGGTCCTATCAATTTCAAGTTGTACAAATCTTTCATTAAAACTACATAAATTTTCAGGCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTCGTGAGTTTCTCGTGAATCTCTTATCCCCCCTCCCCCTTGCTCTCTGTTTTCTTTTTCGTTCAGTACTTTCAGTTGCCCTGCCCCCCCCCCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGACTTTTACGTGTATTTCTGATAAATAAAGCTCTCTGTTGTCTTTTTTGTTCTCTGCTTTCAGTTGCCCGTCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGGCTTTTACGTGTATTTCTGATAAAGAATGTTCTGTTAAGTGTAAACTTCCATCCCTTTAAAGAAAAGGATAAGGATTTCAGGGTATCTGCAGATTTTGTGATAGAGGGTTTTGCCAGGTGCATTTCAACAATAATATGGGTCAATCACTTAAAGTACACTACATTCAATATGCATTTTTATGGCATAGCATGGAAAGACCTTTCTAAATGAATTGTTGTTCCATTCTCATGTTTGGCCTGAAAAATGGAAGCTTCTTCTATGATATGGAAAAAATGCCAAGCACCGACTATTGAAATTGCTGCTCATTTGGTTTACAATTGTATTTCTTGTCTCTTTAATTTCAAAATGCCCAATATATAGTACATCCAGACTTTTTGCATATTTAACCAGCTTATGTAGAAAAGATTCCATATTCTACGCCAATAGATACATGACATCCATTAAGTTATCATTCTCAAAAAAAAAAGATTCATGACATCCATGTACTGAATCGTCAAAAGAGCCATGCTAAGAAAGCCAAGCTTATACTTGTTGGCCCATGCCGATCAGAGAAAACACTCCTATACTGTGTCTAGTGGGGAGCTTTTTCATCTCAAAGAATAAGCAGATCTTCATATTTTGCATTTTACATTACCTTGTAGAAAGAAGAAAAAAGATATTGTGCATTGCTTAAATTTATACTGCCAGGATAAAAAGGAAGTGATCAAGACCTGCTTACAGAATTCAACTAGCTATATAGTTGTATTTTAGTTGAATTATTTGTGCTGCTCTTTGGCAAACAGGATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGA</genome_strand>
        <mrna_strand>TTTTCCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCG................................................................................................................................................................................................................................................................................AGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E278870" ref_strand="+" ref_description="SGN-E278870 [cLER-2-P14]">
      <seq>ttttgaagactagactggttttccggatctctcaggcgctgtttgtcctatcgccgtcgatcaaccctctctacggtccttttccgagggcgtgactaacaatgttgggaggtagagcagtccatcgcttactaggcaggaaatttcaatctgaatccacggcatctccaattttatcatcctttgtttccaaaaaagctcaagaagaatttggttcttttggcatgaagtccttcagaacattagcactcattggagcgggtgtatctggacttctaggttttgcgacagtagcatctgctgatgaggctgaacacggattggaatgcccaagctatccttggcctcatgcaggcattcttagttcatacgatcatgcttcgattcgtcgtggtcaccaggtttatcaaccaagatgtgcatcttgtcattcaatgtcacttgtttcatatcgtgacttggtcggngtggcatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="27316" stop="24268"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27016" g_stop="26931" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26930" i_stop="26659" i_length="272">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26658" g_stop="26584" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="161" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26583" i_stop="25915" i_length="669">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25914" g_stop="25694" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="382" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25693" i_stop="24662" i_length="1032">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24661" g_stop="24568" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="476" r_length="94" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E278870" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278870" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27016" e_stop="26931"/>
          <exon e_start="26658" e_stop="26584"/>
          <exon e_start="25914" e_stop="25694"/>
          <exon e_start="24661" e_stop="24568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGAAGACTAGACTGGTTTTCCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCGGTGAGATATTATCCCTTCGTCTCTCCTCAATTTCTTCGAAGCTCTAGCTTGTTTCATCTTGAAAAGCACCCTAGGATTCCCTTACTTGTTGACGGTGTTTTGAGTAGAACGAATTTGCAGATCGCACAAAGTTGTTTGCTAGGGGAATAAGGAACTGTAGAATGAGTTAGGTTAAATAAATAGTCCGTTCTTAGGCGTATTGACTTAGGAGTAAAATAATCAAATCTGTTGTGTTTTGTTTCCTATTTTTTAATTTTCTGATTTCCTGACAGAGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACGGTATGGCTGTACATTCTTTCTTCGTAGCCGATGCTTATACTCTGAATCTTTGGTTTATGTATATAAGGAGACTTATTGCCTTCAATGTGCATACTCTCTTAATCTCTTCAAAAAATGCTTTTTTTTGTACAATGATGTCTCGTATTTGAAGTGCATTTCATTGGCAACTGGAACACATTTCAGAGCTGTTTAGTTTTTTGTTCCGCAATATGTTGGGTCATGTTTTGATTTCTGTGTAATAGAAGGATAAATTATAATAGAGGATTAGTGTTCTTAAGACTAATAGAAGTGGGTTCTATTAAAGTTTAAGTGTACTAAAATTGTATTCAATATATTCAATCATGCAAACTGGAAAGTTCTCTGTGACAATGCAAATTGAAAAAAGGACTCAGCATTTTGTGACCCTGCATTAAATTGTTTTATGTGAATGCGGTCTGCTTTTTCCTGGTTGTGTTGGCATATATAGTTAAACATGCTGTACTACCTGATAACATAACATCCTTCTTGCGGCAATAAGCTAATAAGTAGTTCGACAAATCACCACTAGCTGTGCTAGAGCTCATATCTGATGTGGGAAATTTTGTGATTGGTACTGATTTAGTTGAAAGACTTGGGTCCTATCAATTTCAAGTTGTACAAATCTTTCATTAAAACTACATAAATTTTCAGGCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTCGTGAGTTTCTCGTGAATCTCTTATCCCCCCTCCCCCTTGCTCTCTGTTTTCTTTTTCGTTCAGTACTTTCAGTTGCCCTGCCCCCCCCCCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGACTTTTACGTGTATTTCTGATAAATAAAGCTCTCTGTTGTCTTTTTTGTTCTCTGCTTTCAGTTGCCCGTCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGGCTTTTACGTGTATTTCTGATAAAGAATGTTCTGTTAAGTGTAAACTTCCATCCCTTTAAAGAAAAGGATAAGGATTTCAGGGTATCTGCAGATTTTGTGATAGAGGGTTTTGCCAGGTGCATTTCAACAATAATATGGGTCAATCACTTAAAGTACACTACATTCAATATGCATTTTTATGGCATAGCATGGAAAGACCTTTCTAAATGAATTGTTGTTCCATTCTCATGTTTGGCCTGAAAAATGGAAGCTTCTTCTATGATATGGAAAAAATGCCAAGCACCGACTATTGAAATTGCTGCTCATTTGGTTTACAATTGTATTTCTTGTCTCTTTAATTTCAAAATGCCCAATATATAGTACATCCAGACTTTTTGCATATTTAACCAGCTTATGTAGAAAAGATTCCATATTCTACGCCAATAGATACATGACATCCATTAAGTTATCATTCTCAAAAAAAAAAGATTCATGACATCCATGTACTGAATCGTCAAAAGAGCCATGCTAAGAAAGCCAAGCTTATACTTGTTGGCCCATGCCGATCAGAGAAAACACTCCTATACTGTGTCTAGTGGGGAGCTTTTTCATCTCAAAGAATAAGCAGATCTTCATATTTTGCATTTTACATTACCTTGTAGAAAGAAGAAAAAAGATATTGTGCATTGCTTAAATTTATACTGCCAGGATAAAAAGGAAGTGATCAAGACCTGCTTACAGAATTCAACTAGCTATATAGTTGTATTTTAGTTGAATTATTTGTGCTGCTCTTTGGCAAACAGGATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATAT</genome_strand>
        <mrna_strand>TTTTGAAGACTAGACTGGTTTTCCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCG................................................................................................................................................................................................................................................................................AGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCGTCGTGGTCACCAGGTTTATCAACCAAGATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGNGTGGCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E306085" ref_strand="+" ref_description="SGN-E306085 [cLEY-13-D13]">
      <seq>ttttccggatctctcaggcgctgtttgtcctatcgccggcgatcaaccctctctacggtccttttccgagggcgtgactaacaatgttgggaggtagagcagtccatcgcttactaggcaggaaatttcaatctgaatccacggcatctccaattttatcatcctttgtttccaaaaaagctcaagaagaatttggttcttttggcatgaagtccttcagaacattagcactcattggagcgggtgtatctggacttctaggttttgcgacagtagcatctgctgatgaggctgaacacggattggaatgcccaagctatccttggcctcatgcaggcattcttagttcatacgatcatgcttcgattcgtcgtggtcaccaggtttatcaacaagtatgtgcatcttgtcattcaatgtcacttgtttcatatcgcgacttggtcggggtggcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="27298" stop="24269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26998" g_stop="26931" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26930" i_stop="26659" i_length="272">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26658" g_stop="26584" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="143" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26583" i_stop="25915" i_length="669">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25914" g_stop="25694" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="364" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25693" i_stop="24662" i_length="1032">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24661" g_stop="24569" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="457" r_length="93" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E306085" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306085" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26998" e_stop="26931"/>
          <exon e_start="26658" e_stop="26584"/>
          <exon e_start="25914" e_stop="25694"/>
          <exon e_start="24661" e_stop="24569"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCGGTGAGATATTATCCCTTCGTCTCTCCTCAATTTCTTCGAAGCTCTAGCTTGTTTCATCTTGAAAAGCACCCTAGGATTCCCTTACTTGTTGACGGTGTTTTGAGTAGAACGAATTTGCAGATCGCACAAAGTTGTTTGCTAGGGGAATAAGGAACTGTAGAATGAGTTAGGTTAAATAAATAGTCCGTTCTTAGGCGTATTGACTTAGGAGTAAAATAATCAAATCTGTTGTGTTTTGTTTCCTATTTTTTAATTTTCTGATTTCCTGACAGAGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACGGTATGGCTGTACATTCTTTCTTCGTAGCCGATGCTTATACTCTGAATCTTTGGTTTATGTATATAAGGAGACTTATTGCCTTCAATGTGCATACTCTCTTAATCTCTTCAAAAAATGCTTTTTTTTGTACAATGATGTCTCGTATTTGAAGTGCATTTCATTGGCAACTGGAACACATTTCAGAGCTGTTTAGTTTTTTGTTCCGCAATATGTTGGGTCATGTTTTGATTTCTGTGTAATAGAAGGATAAATTATAATAGAGGATTAGTGTTCTTAAGACTAATAGAAGTGGGTTCTATTAAAGTTTAAGTGTACTAAAATTGTATTCAATATATTCAATCATGCAAACTGGAAAGTTCTCTGTGACAATGCAAATTGAAAAAAGGACTCAGCATTTTGTGACCCTGCATTAAATTGTTTTATGTGAATGCGGTCTGCTTTTTCCTGGTTGTGTTGGCATATATAGTTAAACATGCTGTACTACCTGATAACATAACATCCTTCTTGCGGCAATAAGCTAATAAGTAGTTCGACAAATCACCACTAGCTGTGCTAGAGCTCATATCTGATGTGGGAAATTTTGTGATTGGTACTGATTTAGTTGAAAGACTTGGGTCCTATCAATTTCAAGTTGTACAAATCTTTCATTAAAACTACATAAATTTTCAGGCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTCGTGAGTTTCTCGTGAATCTCTTATCCCCCCTCCCCCTTGCTCTCTGTTTTCTTTTTCGTTCAGTACTTTCAGTTGCCCTGCCCCCCCCCCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGACTTTTACGTGTATTTCTGATAAATAAAGCTCTCTGTTGTCTTTTTTGTTCTCTGCTTTCAGTTGCCCGTCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGGCTTTTACGTGTATTTCTGATAAAGAATGTTCTGTTAAGTGTAAACTTCCATCCCTTTAAAGAAAAGGATAAGGATTTCAGGGTATCTGCAGATTTTGTGATAGAGGGTTTTGCCAGGTGCATTTCAACAATAATATGGGTCAATCACTTAAAGTACACTACATTCAATATGCATTTTTATGGCATAGCATGGAAAGACCTTTCTAAATGAATTGTTGTTCCATTCTCATGTTTGGCCTGAAAAATGGAAGCTTCTTCTATGATATGGAAAAAATGCCAAGCACCGACTATTGAAATTGCTGCTCATTTGGTTTACAATTGTATTTCTTGTCTCTTTAATTTCAAAATGCCCAATATATAGTACATCCAGACTTTTTGCATATTTAACCAGCTTATGTAGAAAAGATTCCATATTCTACGCCAATAGATACATGACATCCATTAAGTTATCATTCTCAAAAAAAAAAGATTCATGACATCCATGTACTGAATCGTCAAAAGAGCCATGCTAAGAAAGCCAAGCTTATACTTGTTGGCCCATGCCGATCAGAGAAAACACTCCTATACTGTGTCTAGTGGGGAGCTTTTTCATCTCAAAGAATAAGCAGATCTTCATATTTTGCATTTTACATTACCTTGTAGAAAGAAGAAAAAAGATATTGTGCATTGCTTAAATTTATACTGCCAGGATAAAAAGGAAGTGATCAAGACCTGCTTACAGAATTCAACTAGCTATATAGTTGTATTTTAGTTGAATTATTTGTGCTGCTCTTTGGCAAACAGGATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATA</genome_strand>
        <mrna_strand>TTTTCCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGGCGATCAACCCTCTCTACGGTCCTTTTCCG................................................................................................................................................................................................................................................................................AGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGCGACTTGGTCGGGGTGGCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E255154" ref_strand="+" ref_description="SGN-E255154 [cLEG-31-K13]">
      <seq>caaaacctcctcctcttagaattttctgaatagttttgaagactagactggttttccggatctctcaggcgctgtttgtcctatcgccgtcgatcaaccctctctacggtccttttccgagggcgtgactaacaatgttgggaggtagagcagtccatcgcttactaggcaggaaatttcaatctgaatccacggcatctccaattttatcatcctttgtttccaaaaaagctcaagaagaatttggttcttttggcatgaagtccttcagaacattagcactcattggagcgggtgtatctggacttctaggttttgcgacagtagcatctgctgatgaggctgaacacggattggaatgcccaagctatccttggcctcatgcaggcattcttagttcatacgatcatgcttcgattcgtcgtggtcaccaggtttatcaacaagtatgtgcatcttgtcattcaatgtcacttgtttcatatcgtgacttggtcgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="27349" stop="24276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27049" g_stop="26931" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26930" i_stop="26659" i_length="272">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26658" g_stop="26584" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="194" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26583" i_stop="25915" i_length="669">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25914" g_stop="25694" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="415" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25693" i_stop="24662" i_length="1032">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24661" g_stop="24576" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="501" r_length="86" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E255154" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255154" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27049" e_stop="26931"/>
          <exon e_start="26658" e_stop="26584"/>
          <exon e_start="25914" e_stop="25694"/>
          <exon e_start="24661" e_stop="24576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACCTCCTCCTCTTAGAATTTTCTGAATAGTTTTGAAGACTAGACTGGTTTTCCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCGGTGAGATATTATCCCTTCGTCTCTCCTCAATTTCTTCGAAGCTCTAGCTTGTTTCATCTTGAAAAGCACCCTAGGATTCCCTTACTTGTTGACGGTGTTTTGAGTAGAACGAATTTGCAGATCGCACAAAGTTGTTTGCTAGGGGAATAAGGAACTGTAGAATGAGTTAGGTTAAATAAATAGTCCGTTCTTAGGCGTATTGACTTAGGAGTAAAATAATCAAATCTGTTGTGTTTTGTTTCCTATTTTTTAATTTTCTGATTTCCTGACAGAGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACGGTATGGCTGTACATTCTTTCTTCGTAGCCGATGCTTATACTCTGAATCTTTGGTTTATGTATATAAGGAGACTTATTGCCTTCAATGTGCATACTCTCTTAATCTCTTCAAAAAATGCTTTTTTTTGTACAATGATGTCTCGTATTTGAAGTGCATTTCATTGGCAACTGGAACACATTTCAGAGCTGTTTAGTTTTTTGTTCCGCAATATGTTGGGTCATGTTTTGATTTCTGTGTAATAGAAGGATAAATTATAATAGAGGATTAGTGTTCTTAAGACTAATAGAAGTGGGTTCTATTAAAGTTTAAGTGTACTAAAATTGTATTCAATATATTCAATCATGCAAACTGGAAAGTTCTCTGTGACAATGCAAATTGAAAAAAGGACTCAGCATTTTGTGACCCTGCATTAAATTGTTTTATGTGAATGCGGTCTGCTTTTTCCTGGTTGTGTTGGCATATATAGTTAAACATGCTGTACTACCTGATAACATAACATCCTTCTTGCGGCAATAAGCTAATAAGTAGTTCGACAAATCACCACTAGCTGTGCTAGAGCTCATATCTGATGTGGGAAATTTTGTGATTGGTACTGATTTAGTTGAAAGACTTGGGTCCTATCAATTTCAAGTTGTACAAATCTTTCATTAAAACTACATAAATTTTCAGGCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTCGTGAGTTTCTCGTGAATCTCTTATCCCCCCTCCCCCTTGCTCTCTGTTTTCTTTTTCGTTCAGTACTTTCAGTTGCCCTGCCCCCCCCCCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGACTTTTACGTGTATTTCTGATAAATAAAGCTCTCTGTTGTCTTTTTTGTTCTCTGCTTTCAGTTGCCCGTCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGGCTTTTACGTGTATTTCTGATAAAGAATGTTCTGTTAAGTGTAAACTTCCATCCCTTTAAAGAAAAGGATAAGGATTTCAGGGTATCTGCAGATTTTGTGATAGAGGGTTTTGCCAGGTGCATTTCAACAATAATATGGGTCAATCACTTAAAGTACACTACATTCAATATGCATTTTTATGGCATAGCATGGAAAGACCTTTCTAAATGAATTGTTGTTCCATTCTCATGTTTGGCCTGAAAAATGGAAGCTTCTTCTATGATATGGAAAAAATGCCAAGCACCGACTATTGAAATTGCTGCTCATTTGGTTTACAATTGTATTTCTTGTCTCTTTAATTTCAAAATGCCCAATATATAGTACATCCAGACTTTTTGCATATTTAACCAGCTTATGTAGAAAAGATTCCATATTCTACGCCAATAGATACATGACATCCATTAAGTTATCATTCTCAAAAAAAAAAGATTCATGACATCCATGTACTGAATCGTCAAAAGAGCCATGCTAAGAAAGCCAAGCTTATACTTGTTGGCCCATGCCGATCAGAGAAAACACTCCTATACTGTGTCTAGTGGGGAGCTTTTTCATCTCAAAGAATAAGCAGATCTTCATATTTTGCATTTTACATTACCTTGTAGAAAGAAGAAAAAAGATATTGTGCATTGCTTAAATTTATACTGCCAGGATAAAAAGGAAGTGATCAAGACCTGCTTACAGAATTCAACTAGCTATATAGTTGTATTTTAGTTGAATTATTTGTGCTGCTCTTTGGCAAACAGGATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGG</genome_strand>
        <mrna_strand>CAAAACCTCCTCCTCTTAGAATTTTCTGAATAGTTTTGAAGACTAGACTGGTTTTCCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCG................................................................................................................................................................................................................................................................................AGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E255845" ref_strand="+" ref_description="SGN-E255845 [cLEG-35-G18]">
      <seq>ttttgaagactagactggttttccggatctctcaggcgctgtttgtcctatcgccgtcgatcaaccctctctacggtccttttccgagggcgtgactaacaatgttgggaggtagagcagtccatcgcttactaggcaggaaatttcaatctgaatccacggcatctccaattttatcatcctttgtttccaaaaaagctcaagaagaatttggttcttttggcatgaagtccttcagaacattagcactcattggagcgggtgtatctggacttctaggttttgcgacagtagcatctgctgatgaggctgaacacggattggaatgcccaagctatccttggcctcatgcaggcattcttagttcatacgatcatgcttcgattcgtcgtggtcaccaggtttatcaacaagtatgtgcatcttgtcattcaatgtcacttgtttcatatcgtgacttggtcggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="27316" stop="24277"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27016" g_stop="26931" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26930" i_stop="26659" i_length="272">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26658" g_stop="26584" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="161" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26583" i_stop="25915" i_length="669">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25914" g_stop="25694" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="382" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25693" i_stop="24662" i_length="1032">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24661" g_stop="24577" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="467" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E255845" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27016" e_stop="26931"/>
          <exon e_start="26658" e_stop="26584"/>
          <exon e_start="25914" e_stop="25694"/>
          <exon e_start="24661" e_stop="24577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGAAGACTAGACTGGTTTTCCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCGGTGAGATATTATCCCTTCGTCTCTCCTCAATTTCTTCGAAGCTCTAGCTTGTTTCATCTTGAAAAGCACCCTAGGATTCCCTTACTTGTTGACGGTGTTTTGAGTAGAACGAATTTGCAGATCGCACAAAGTTGTTTGCTAGGGGAATAAGGAACTGTAGAATGAGTTAGGTTAAATAAATAGTCCGTTCTTAGGCGTATTGACTTAGGAGTAAAATAATCAAATCTGTTGTGTTTTGTTTCCTATTTTTTAATTTTCTGATTTCCTGACAGAGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACGGTATGGCTGTACATTCTTTCTTCGTAGCCGATGCTTATACTCTGAATCTTTGGTTTATGTATATAAGGAGACTTATTGCCTTCAATGTGCATACTCTCTTAATCTCTTCAAAAAATGCTTTTTTTTGTACAATGATGTCTCGTATTTGAAGTGCATTTCATTGGCAACTGGAACACATTTCAGAGCTGTTTAGTTTTTTGTTCCGCAATATGTTGGGTCATGTTTTGATTTCTGTGTAATAGAAGGATAAATTATAATAGAGGATTAGTGTTCTTAAGACTAATAGAAGTGGGTTCTATTAAAGTTTAAGTGTACTAAAATTGTATTCAATATATTCAATCATGCAAACTGGAAAGTTCTCTGTGACAATGCAAATTGAAAAAAGGACTCAGCATTTTGTGACCCTGCATTAAATTGTTTTATGTGAATGCGGTCTGCTTTTTCCTGGTTGTGTTGGCATATATAGTTAAACATGCTGTACTACCTGATAACATAACATCCTTCTTGCGGCAATAAGCTAATAAGTAGTTCGACAAATCACCACTAGCTGTGCTAGAGCTCATATCTGATGTGGGAAATTTTGTGATTGGTACTGATTTAGTTGAAAGACTTGGGTCCTATCAATTTCAAGTTGTACAAATCTTTCATTAAAACTACATAAATTTTCAGGCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTCGTGAGTTTCTCGTGAATCTCTTATCCCCCCTCCCCCTTGCTCTCTGTTTTCTTTTTCGTTCAGTACTTTCAGTTGCCCTGCCCCCCCCCCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGACTTTTACGTGTATTTCTGATAAATAAAGCTCTCTGTTGTCTTTTTTGTTCTCTGCTTTCAGTTGCCCGTCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGGCTTTTACGTGTATTTCTGATAAAGAATGTTCTGTTAAGTGTAAACTTCCATCCCTTTAAAGAAAAGGATAAGGATTTCAGGGTATCTGCAGATTTTGTGATAGAGGGTTTTGCCAGGTGCATTTCAACAATAATATGGGTCAATCACTTAAAGTACACTACATTCAATATGCATTTTTATGGCATAGCATGGAAAGACCTTTCTAAATGAATTGTTGTTCCATTCTCATGTTTGGCCTGAAAAATGGAAGCTTCTTCTATGATATGGAAAAAATGCCAAGCACCGACTATTGAAATTGCTGCTCATTTGGTTTACAATTGTATTTCTTGTCTCTTTAATTTCAAAATGCCCAATATATAGTACATCCAGACTTTTTGCATATTTAACCAGCTTATGTAGAAAAGATTCCATATTCTACGCCAATAGATACATGACATCCATTAAGTTATCATTCTCAAAAAAAAAAGATTCATGACATCCATGTACTGAATCGTCAAAAGAGCCATGCTAAGAAAGCCAAGCTTATACTTGTTGGCCCATGCCGATCAGAGAAAACACTCCTATACTGTGTCTAGTGGGGAGCTTTTTCATCTCAAAGAATAAGCAGATCTTCATATTTTGCATTTTACATTACCTTGTAGAAAGAAGAAAAAAGATATTGTGCATTGCTTAAATTTATACTGCCAGGATAAAAAGGAAGTGATCAAGACCTGCTTACAGAATTCAACTAGCTATATAGTTGTATTTTAGTTGAATTATTTGTGCTGCTCTTTGGCAAACAGGATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGG</genome_strand>
        <mrna_strand>TTTTGAAGACTAGACTGGTTTTCCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCG................................................................................................................................................................................................................................................................................AGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E247056" ref_strand="+" ref_description="SGN-E247056 [cLEF-41-J1]">
      <seq>tgaagactagactggttttccggatctctcaggcgctgtttgtcctatcgccgtcgatcaaccctctctacggtccttttccgagggcgtgactaacaatgttgggaggtagagcagtccatcgcttactaggcaggaaatttcaatctgaatccacggcatctccaattttatcatcctttgtttccaaaaaagctcaagaagaatttggttcttttggcatgaagtccttcagaacattagcactcattggagcgggtgtatctggacttctaggttttgcgacagtagcatctgctgatgaggctgaacacggattggaatgcccaagctatccttggcctcatgcaggcattcttagttcatacgatcatgcttcgattcgtcgtggtcaccaggtttatcaacaagtatgtgcatcttgtcattcaatgtcacttgtttcatatcgtgacttggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="27313" stop="24280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27013" g_stop="26931" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26930" i_stop="26659" i_length="272">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26658" g_stop="26584" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="158" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26583" i_stop="25915" i_length="669">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25914" g_stop="25694" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="379" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25693" i_stop="24662" i_length="1032">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24661" g_stop="24580" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="461" r_length="82" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E247056" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247056" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27013" e_stop="26931"/>
          <exon e_start="26658" e_stop="26584"/>
          <exon e_start="25914" e_stop="25694"/>
          <exon e_start="24661" e_stop="24580"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGACTAGACTGGTTTTCCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCGGTGAGATATTATCCCTTCGTCTCTCCTCAATTTCTTCGAAGCTCTAGCTTGTTTCATCTTGAAAAGCACCCTAGGATTCCCTTACTTGTTGACGGTGTTTTGAGTAGAACGAATTTGCAGATCGCACAAAGTTGTTTGCTAGGGGAATAAGGAACTGTAGAATGAGTTAGGTTAAATAAATAGTCCGTTCTTAGGCGTATTGACTTAGGAGTAAAATAATCAAATCTGTTGTGTTTTGTTTCCTATTTTTTAATTTTCTGATTTCCTGACAGAGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACGGTATGGCTGTACATTCTTTCTTCGTAGCCGATGCTTATACTCTGAATCTTTGGTTTATGTATATAAGGAGACTTATTGCCTTCAATGTGCATACTCTCTTAATCTCTTCAAAAAATGCTTTTTTTTGTACAATGATGTCTCGTATTTGAAGTGCATTTCATTGGCAACTGGAACACATTTCAGAGCTGTTTAGTTTTTTGTTCCGCAATATGTTGGGTCATGTTTTGATTTCTGTGTAATAGAAGGATAAATTATAATAGAGGATTAGTGTTCTTAAGACTAATAGAAGTGGGTTCTATTAAAGTTTAAGTGTACTAAAATTGTATTCAATATATTCAATCATGCAAACTGGAAAGTTCTCTGTGACAATGCAAATTGAAAAAAGGACTCAGCATTTTGTGACCCTGCATTAAATTGTTTTATGTGAATGCGGTCTGCTTTTTCCTGGTTGTGTTGGCATATATAGTTAAACATGCTGTACTACCTGATAACATAACATCCTTCTTGCGGCAATAAGCTAATAAGTAGTTCGACAAATCACCACTAGCTGTGCTAGAGCTCATATCTGATGTGGGAAATTTTGTGATTGGTACTGATTTAGTTGAAAGACTTGGGTCCTATCAATTTCAAGTTGTACAAATCTTTCATTAAAACTACATAAATTTTCAGGCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTCGTGAGTTTCTCGTGAATCTCTTATCCCCCCTCCCCCTTGCTCTCTGTTTTCTTTTTCGTTCAGTACTTTCAGTTGCCCTGCCCCCCCCCCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGACTTTTACGTGTATTTCTGATAAATAAAGCTCTCTGTTGTCTTTTTTGTTCTCTGCTTTCAGTTGCCCGTCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGGCTTTTACGTGTATTTCTGATAAAGAATGTTCTGTTAAGTGTAAACTTCCATCCCTTTAAAGAAAAGGATAAGGATTTCAGGGTATCTGCAGATTTTGTGATAGAGGGTTTTGCCAGGTGCATTTCAACAATAATATGGGTCAATCACTTAAAGTACACTACATTCAATATGCATTTTTATGGCATAGCATGGAAAGACCTTTCTAAATGAATTGTTGTTCCATTCTCATGTTTGGCCTGAAAAATGGAAGCTTCTTCTATGATATGGAAAAAATGCCAAGCACCGACTATTGAAATTGCTGCTCATTTGGTTTACAATTGTATTTCTTGTCTCTTTAATTTCAAAATGCCCAATATATAGTACATCCAGACTTTTTGCATATTTAACCAGCTTATGTAGAAAAGATTCCATATTCTACGCCAATAGATACATGACATCCATTAAGTTATCATTCTCAAAAAAAAAAGATTCATGACATCCATGTACTGAATCGTCAAAAGAGCCATGCTAAGAAAGCCAAGCTTATACTTGTTGGCCCATGCCGATCAGAGAAAACACTCCTATACTGTGTCTAGTGGGGAGCTTTTTCATCTCAAAGAATAAGCAGATCTTCATATTTTGCATTTTACATTACCTTGTAGAAAGAAGAAAAAAGATATTGTGCATTGCTTAAATTTATACTGCCAGGATAAAAAGGAAGTGATCAAGACCTGCTTACAGAATTCAACTAGCTATATAGTTGTATTTTAGTTGAATTATTTGTGCTGCTCTTTGGCAAACAGGATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTC</genome_strand>
        <mrna_strand>TGAAGACTAGACTGGTTTTCCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCG................................................................................................................................................................................................................................................................................AGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E258874" ref_strand="+" ref_description="SGN-E258874 [cLEG-41-C4]">
      <seq>cgggctgccggctcaggcgctgtttgtcctatcgccgtcgatcaaccctcttttcggtccttttccgagggcgtgacggacaatgttgggaggtagagcagtccatcgcttactaagcaggaaatttcaatctgaatccacggcatctccaattttatcatcctttgtttccaaaaaagctcaagaagaatttggttcttttggcatgaagtccttcagaacattagcactcattggagcgggtgtatctggacttctaggttttgcgacagtagcatctgctgatgaggctgaacacggattggaatgcccaagctatccttggcctcatgcaggcattcttagttcatacgatcatgcttcgattcgtcgtggtcaccaggtttatcaacaagtatgtgcatcttgtcattcaatgtcacttgtttcatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="27286" stop="24292"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26981" g_stop="26931" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="67" r_length="51" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26930" i_stop="26659" i_length="272">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26658" g_stop="26584" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="142" r_length="75" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26583" i_stop="25915" i_length="669">
            <donor d_prob="0.858" d_score="0.98"/>
            <acceptor a_prob="0.831" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25914" g_stop="25694" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="363" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25693" i_stop="24662" i_length="1032">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24661" g_stop="24592" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="433" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E258874" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258874" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26981" e_stop="26931"/>
          <exon e_start="26658" e_stop="26584"/>
          <exon e_start="25914" e_stop="25694"/>
          <exon e_start="24661" e_stop="24592"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCGGTGAGATATTATCCCTTCGTCTCTCCTCAATTTCTTCGAAGCTCTAGCTTGTTTCATCTTGAAAAGCACCCTAGGATTCCCTTACTTGTTGACGGTGTTTTGAGTAGAACGAATTTGCAGATCGCACAAAGTTGTTTGCTAGGGGAATAAGGAACTGTAGAATGAGTTAGGTTAAATAAATAGTCCGTTCTTAGGCGTATTGACTTAGGAGTAAAATAATCAAATCTGTTGTGTTTTGTTTCCTATTTTTTAATTTTCTGATTTCCTGACAGAGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACGGTATGGCTGTACATTCTTTCTTCGTAGCCGATGCTTATACTCTGAATCTTTGGTTTATGTATATAAGGAGACTTATTGCCTTCAATGTGCATACTCTCTTAATCTCTTCAAAAAATGCTTTTTTTTGTACAATGATGTCTCGTATTTGAAGTGCATTTCATTGGCAACTGGAACACATTTCAGAGCTGTTTAGTTTTTTGTTCCGCAATATGTTGGGTCATGTTTTGATTTCTGTGTAATAGAAGGATAAATTATAATAGAGGATTAGTGTTCTTAAGACTAATAGAAGTGGGTTCTATTAAAGTTTAAGTGTACTAAAATTGTATTCAATATATTCAATCATGCAAACTGGAAAGTTCTCTGTGACAATGCAAATTGAAAAAAGGACTCAGCATTTTGTGACCCTGCATTAAATTGTTTTATGTGAATGCGGTCTGCTTTTTCCTGGTTGTGTTGGCATATATAGTTAAACATGCTGTACTACCTGATAACATAACATCCTTCTTGCGGCAATAAGCTAATAAGTAGTTCGACAAATCACCACTAGCTGTGCTAGAGCTCATATCTGATGTGGGAAATTTTGTGATTGGTACTGATTTAGTTGAAAGACTTGGGTCCTATCAATTTCAAGTTGTACAAATCTTTCATTAAAACTACATAAATTTTCAGGCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTCGTGAGTTTCTCGTGAATCTCTTATCCCCCCTCCCCCTTGCTCTCTGTTTTCTTTTTCGTTCAGTACTTTCAGTTGCCCTGCCCCCCCCCCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGACTTTTACGTGTATTTCTGATAAATAAAGCTCTCTGTTGTCTTTTTTGTTCTCTGCTTTCAGTTGCCCGTCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGGCTTTTACGTGTATTTCTGATAAAGAATGTTCTGTTAAGTGTAAACTTCCATCCCTTTAAAGAAAAGGATAAGGATTTCAGGGTATCTGCAGATTTTGTGATAGAGGGTTTTGCCAGGTGCATTTCAACAATAATATGGGTCAATCACTTAAAGTACACTACATTCAATATGCATTTTTATGGCATAGCATGGAAAGACCTTTCTAAATGAATTGTTGTTCCATTCTCATGTTTGGCCTGAAAAATGGAAGCTTCTTCTATGATATGGAAAAAATGCCAAGCACCGACTATTGAAATTGCTGCTCATTTGGTTTACAATTGTATTTCTTGTCTCTTTAATTTCAAAATGCCCAATATATAGTACATCCAGACTTTTTGCATATTTAACCAGCTTATGTAGAAAAGATTCCATATTCTACGCCAATAGATACATGACATCCATTAAGTTATCATTCTCAAAAAAAAAAGATTCATGACATCCATGTACTGAATCGTCAAAAGAGCCATGCTAAGAAAGCCAAGCTTATACTTGTTGGCCCATGCCGATCAGAGAAAACACTCCTATACTGTGTCTAGTGGGGAGCTTTTTCATCTCAAAGAATAAGCAGATCTTCATATTTTGCATTTTACATTACCTTGTAGAAAGAAGAAAAAAGATATTGTGCATTGCTTAAATTTATACTGCCAGGATAAAAAGGAAGTGATCAAGACCTGCTTACAGAATTCAACTAGCTATATAGTTGTATTTTAGTTGAATTATTTGTGCTGCTCTTTGGCAAACAGGATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATAT</genome_strand>
        <mrna_strand>GCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTTTTCGGTCCTTTTCCG................................................................................................................................................................................................................................................................................AGGGCGTGACGGACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAAGCAGGAAATTTCAATCTGAATCCACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E256938" ref_strand="+" ref_description="SGN-E256938 [cLEG-44-E14]">
      <seq>cctcctcttagaattttctgaatagttttgaagaactagactggttttccggatctctcaggcgctgtttgtcctatcgccgtcgatccaaccctctctacggtccttttccgagggcgtgactaacaatgttgggaggtagagcagtccatcgcttactaggcaggaaatttcaatctgaatccacggcatctccaattttatcatcctttgtttccaaaaaagctcaagaagaatttggttcttttggcatgaagtccttcagaacattagcactcattggagcgggtgtatctggacttctaggttttgcgacagtagcatctgctgatgaggctgaacacggattggaatgcccaagctatccttggcctcatgcaggcattcttagttcatacgatcatgcttcgattcgtcgtggtcaccaggtttatcaacaagtatgtgcatcttgtcattcaatgtcacttgtttcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="27341" stop="24293"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27041" g_stop="26931" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26930" i_stop="26659" i_length="272">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26658" g_stop="26584" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="188" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26583" i_stop="25915" i_length="669">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25914" g_stop="25694" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="409" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25693" i_stop="24662" i_length="1032">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24661" g_stop="24593" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="478" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E256938" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27041" e_stop="26931"/>
          <exon e_start="26658" e_stop="26584"/>
          <exon e_start="25914" e_stop="25694"/>
          <exon e_start="24661" e_stop="24593"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCCTCTTAGAATTTTCTGAATAGTTTTGAAGA-CTAGACTGGTTTTCCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGAT-CAACCCTCTCTACGGTCCTTTTCCGGTGAGATATTATCCCTTCGTCTCTCCTCAATTTCTTCGAAGCTCTAGCTTGTTTCATCTTGAAAAGCACCCTAGGATTCCCTTACTTGTTGACGGTGTTTTGAGTAGAACGAATTTGCAGATCGCACAAAGTTGTTTGCTAGGGGAATAAGGAACTGTAGAATGAGTTAGGTTAAATAAATAGTCCGTTCTTAGGCGTATTGACTTAGGAGTAAAATAATCAAATCTGTTGTGTTTTGTTTCCTATTTTTTAATTTTCTGATTTCCTGACAGAGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACGGTATGGCTGTACATTCTTTCTTCGTAGCCGATGCTTATACTCTGAATCTTTGGTTTATGTATATAAGGAGACTTATTGCCTTCAATGTGCATACTCTCTTAATCTCTTCAAAAAATGCTTTTTTTTGTACAATGATGTCTCGTATTTGAAGTGCATTTCATTGGCAACTGGAACACATTTCAGAGCTGTTTAGTTTTTTGTTCCGCAATATGTTGGGTCATGTTTTGATTTCTGTGTAATAGAAGGATAAATTATAATAGAGGATTAGTGTTCTTAAGACTAATAGAAGTGGGTTCTATTAAAGTTTAAGTGTACTAAAATTGTATTCAATATATTCAATCATGCAAACTGGAAAGTTCTCTGTGACAATGCAAATTGAAAAAAGGACTCAGCATTTTGTGACCCTGCATTAAATTGTTTTATGTGAATGCGGTCTGCTTTTTCCTGGTTGTGTTGGCATATATAGTTAAACATGCTGTACTACCTGATAACATAACATCCTTCTTGCGGCAATAAGCTAATAAGTAGTTCGACAAATCACCACTAGCTGTGCTAGAGCTCATATCTGATGTGGGAAATTTTGTGATTGGTACTGATTTAGTTGAAAGACTTGGGTCCTATCAATTTCAAGTTGTACAAATCTTTCATTAAAACTACATAAATTTTCAGGCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTCGTGAGTTTCTCGTGAATCTCTTATCCCCCCTCCCCCTTGCTCTCTGTTTTCTTTTTCGTTCAGTACTTTCAGTTGCCCTGCCCCCCCCCCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGACTTTTACGTGTATTTCTGATAAATAAAGCTCTCTGTTGTCTTTTTTGTTCTCTGCTTTCAGTTGCCCGTCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGGCTTTTACGTGTATTTCTGATAAAGAATGTTCTGTTAAGTGTAAACTTCCATCCCTTTAAAGAAAAGGATAAGGATTTCAGGGTATCTGCAGATTTTGTGATAGAGGGTTTTGCCAGGTGCATTTCAACAATAATATGGGTCAATCACTTAAAGTACACTACATTCAATATGCATTTTTATGGCATAGCATGGAAAGACCTTTCTAAATGAATTGTTGTTCCATTCTCATGTTTGGCCTGAAAAATGGAAGCTTCTTCTATGATATGGAAAAAATGCCAAGCACCGACTATTGAAATTGCTGCTCATTTGGTTTACAATTGTATTTCTTGTCTCTTTAATTTCAAAATGCCCAATATATAGTACATCCAGACTTTTTGCATATTTAACCAGCTTATGTAGAAAAGATTCCATATTCTACGCCAATAGATACATGACATCCATTAAGTTATCATTCTCAAAAAAAAAAGATTCATGACATCCATGTACTGAATCGTCAAAAGAGCCATGCTAAGAAAGCCAAGCTTATACTTGTTGGCCCATGCCGATCAGAGAAAACACTCCTATACTGTGTCTAGTGGGGAGCTTTTTCATCTCAAAGAATAAGCAGATCTTCATATTTTGCATTTTACATTACCTTGTAGAAAGAAGAAAAAAGATATTGTGCATTGCTTAAATTTATACTGCCAGGATAAAAAGGAAGTGATCAAGACCTGCTTACAGAATTCAACTAGCTATATAGTTGTATTTTAGTTGAATTATTTGTGCTGCTCTTTGGCAAACAGGATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATA</genome_strand>
        <mrna_strand>CCTCCTCTTAGAATTTTCTGAATAGTTTTGAAGAACTAGACTGGTTTTCCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCCAACCCTCTCTACGGTCCTTTTCCG................................................................................................................................................................................................................................................................................AGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E244824" ref_strand="+" ref_description="SGN-E244824 [cLEF-2-M19]">
      <seq>gaggtagagcagtccatcgcttactaggcaggaaatttcaatctgaatccacggcatctccaattttatcatcctttgtttccaaaaaagctcaagaagaatttggttcttttggcatgaagtccttcagaacattagcactcattggagcgggtgtatctggacttctaggttttgcgacagtagcatctgctgatgaggctgaacacggattggaatgcccaagctatccttggcctcatgcaggcattcttagttcatacgatcatgcttcgattcgtcgtggtcaccaggtttatcaacaagtatgtgcatcttgtcattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="26936" stop="24311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26636" g_stop="26584" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26583" i_stop="25915" i_length="669">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25914" g_stop="25694" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="274" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25693" i_stop="24662" i_length="1032">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24661" g_stop="24611" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="325" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E244824" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244824" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26636" e_stop="26584"/>
          <exon e_start="25914" e_stop="25694"/>
          <exon e_start="24661" e_stop="24611"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACGGTATGGCTGTACATTCTTTCTTCGTAGCCGATGCTTATACTCTGAATCTTTGGTTTATGTATATAAGGAGACTTATTGCCTTCAATGTGCATACTCTCTTAATCTCTTCAAAAAATGCTTTTTTTTGTACAATGATGTCTCGTATTTGAAGTGCATTTCATTGGCAACTGGAACACATTTCAGAGCTGTTTAGTTTTTTGTTCCGCAATATGTTGGGTCATGTTTTGATTTCTGTGTAATAGAAGGATAAATTATAATAGAGGATTAGTGTTCTTAAGACTAATAGAAGTGGGTTCTATTAAAGTTTAAGTGTACTAAAATTGTATTCAATATATTCAATCATGCAAACTGGAAAGTTCTCTGTGACAATGCAAATTGAAAAAAGGACTCAGCATTTTGTGACCCTGCATTAAATTGTTTTATGTGAATGCGGTCTGCTTTTTCCTGGTTGTGTTGGCATATATAGTTAAACATGCTGTACTACCTGATAACATAACATCCTTCTTGCGGCAATAAGCTAATAAGTAGTTCGACAAATCACCACTAGCTGTGCTAGAGCTCATATCTGATGTGGGAAATTTTGTGATTGGTACTGATTTAGTTGAAAGACTTGGGTCCTATCAATTTCAAGTTGTACAAATCTTTCATTAAAACTACATAAATTTTCAGGCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTCGTGAGTTTCTCGTGAATCTCTTATCCCCCCTCCCCCTTGCTCTCTGTTTTCTTTTTCGTTCAGTACTTTCAGTTGCCCTGCCCCCCCCCCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGACTTTTACGTGTATTTCTGATAAATAAAGCTCTCTGTTGTCTTTTTTGTTCTCTGCTTTCAGTTGCCCGTCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGGCTTTTACGTGTATTTCTGATAAAGAATGTTCTGTTAAGTGTAAACTTCCATCCCTTTAAAGAAAAGGATAAGGATTTCAGGGTATCTGCAGATTTTGTGATAGAGGGTTTTGCCAGGTGCATTTCAACAATAATATGGGTCAATCACTTAAAGTACACTACATTCAATATGCATTTTTATGGCATAGCATGGAAAGACCTTTCTAAATGAATTGTTGTTCCATTCTCATGTTTGGCCTGAAAAATGGAAGCTTCTTCTATGATATGGAAAAAATGCCAAGCACCGACTATTGAAATTGCTGCTCATTTGGTTTACAATTGTATTTCTTGTCTCTTTAATTTCAAAATGCCCAATATATAGTACATCCAGACTTTTTGCATATTTAACCAGCTTATGTAGAAAAGATTCCATATTCTACGCCAATAGATACATGACATCCATTAAGTTATCATTCTCAAAAAAAAAAGATTCATGACATCCATGTACTGAATCGTCAAAAGAGCCATGCTAAGAAAGCCAAGCTTATACTTGTTGGCCCATGCCGATCAGAGAAAACACTCCTATACTGTGTCTAGTGGGGAGCTTTTTCATCTCAAAGAATAAGCAGATCTTCATATTTTGCATTTTACATTACCTTGTAGAAAGAAGAAAAAAGATATTGTGCATTGCTTAAATTTATACTGCCAGGATAAAAAGGAAGTGATCAAGACCTGCTTACAGAATTCAACTAGCTATATAGTTGTATTTTAGTTGAATTATTTGTGCTGCTCTTTGGCAAACAGGATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTC</genome_strand>
        <mrna_strand>GAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E245189" ref_strand="+" ref_description="SGN-E245189 [cLEF-13-H11]">
      <seq>tttgaagactagactggttttccggatctctcaggcgctgtttgtcctatcgccgtcgatcaaccctctctacggtccttttccgagggcgtgactaacaatgttgggaggtagagcagtccatcgcttactaggcaggaaatttcaatctgaatccacggcatctccaattttatcatcctttgtttccaaaaaagctcaagaagaatttggttcttttggcatgaagtccttcagaacattagcactcattggagcgggtgtatctggacttctaggttttgcgacagtagcatctgctgatgaggctgaacacggattggaatgcccaagctatccttggcctcatgcaggcattcttagttcatacgatcatgcttcgattcgtcgtggtcaccaggtttatcaacaagtatgtgcatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="27315" stop="24318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27015" g_stop="26931" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26930" i_stop="26659" i_length="272">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26658" g_stop="26584" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="160" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26583" i_stop="25915" i_length="669">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25914" g_stop="25694" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="381" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25693" i_stop="24662" i_length="1032">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24661" g_stop="24618" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="425" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E245189" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245189" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27015" e_stop="26931"/>
          <exon e_start="26658" e_stop="26584"/>
          <exon e_start="25914" e_stop="25694"/>
          <exon e_start="24661" e_stop="24618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAAGACTAGACTGGTTTTCCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCGGTGAGATATTATCCCTTCGTCTCTCCTCAATTTCTTCGAAGCTCTAGCTTGTTTCATCTTGAAAAGCACCCTAGGATTCCCTTACTTGTTGACGGTGTTTTGAGTAGAACGAATTTGCAGATCGCACAAAGTTGTTTGCTAGGGGAATAAGGAACTGTAGAATGAGTTAGGTTAAATAAATAGTCCGTTCTTAGGCGTATTGACTTAGGAGTAAAATAATCAAATCTGTTGTGTTTTGTTTCCTATTTTTTAATTTTCTGATTTCCTGACAGAGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACGGTATGGCTGTACATTCTTTCTTCGTAGCCGATGCTTATACTCTGAATCTTTGGTTTATGTATATAAGGAGACTTATTGCCTTCAATGTGCATACTCTCTTAATCTCTTCAAAAAATGCTTTTTTTTGTACAATGATGTCTCGTATTTGAAGTGCATTTCATTGGCAACTGGAACACATTTCAGAGCTGTTTAGTTTTTTGTTCCGCAATATGTTGGGTCATGTTTTGATTTCTGTGTAATAGAAGGATAAATTATAATAGAGGATTAGTGTTCTTAAGACTAATAGAAGTGGGTTCTATTAAAGTTTAAGTGTACTAAAATTGTATTCAATATATTCAATCATGCAAACTGGAAAGTTCTCTGTGACAATGCAAATTGAAAAAAGGACTCAGCATTTTGTGACCCTGCATTAAATTGTTTTATGTGAATGCGGTCTGCTTTTTCCTGGTTGTGTTGGCATATATAGTTAAACATGCTGTACTACCTGATAACATAACATCCTTCTTGCGGCAATAAGCTAATAAGTAGTTCGACAAATCACCACTAGCTGTGCTAGAGCTCATATCTGATGTGGGAAATTTTGTGATTGGTACTGATTTAGTTGAAAGACTTGGGTCCTATCAATTTCAAGTTGTACAAATCTTTCATTAAAACTACATAAATTTTCAGGCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTCGTGAGTTTCTCGTGAATCTCTTATCCCCCCTCCCCCTTGCTCTCTGTTTTCTTTTTCGTTCAGTACTTTCAGTTGCCCTGCCCCCCCCCCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGACTTTTACGTGTATTTCTGATAAATAAAGCTCTCTGTTGTCTTTTTTGTTCTCTGCTTTCAGTTGCCCGTCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGGCTTTTACGTGTATTTCTGATAAAGAATGTTCTGTTAAGTGTAAACTTCCATCCCTTTAAAGAAAAGGATAAGGATTTCAGGGTATCTGCAGATTTTGTGATAGAGGGTTTTGCCAGGTGCATTTCAACAATAATATGGGTCAATCACTTAAAGTACACTACATTCAATATGCATTTTTATGGCATAGCATGGAAAGACCTTTCTAAATGAATTGTTGTTCCATTCTCATGTTTGGCCTGAAAAATGGAAGCTTCTTCTATGATATGGAAAAAATGCCAAGCACCGACTATTGAAATTGCTGCTCATTTGGTTTACAATTGTATTTCTTGTCTCTTTAATTTCAAAATGCCCAATATATAGTACATCCAGACTTTTTGCATATTTAACCAGCTTATGTAGAAAAGATTCCATATTCTACGCCAATAGATACATGACATCCATTAAGTTATCATTCTCAAAAAAAAAAGATTCATGACATCCATGTACTGAATCGTCAAAAGAGCCATGCTAAGAAAGCCAAGCTTATACTTGTTGGCCCATGCCGATCAGAGAAAACACTCCTATACTGTGTCTAGTGGGGAGCTTTTTCATCTCAAAGAATAAGCAGATCTTCATATTTTGCATTTTACATTACCTTGTAGAAAGAAGAAAAAAGATATTGTGCATTGCTTAAATTTATACTGCCAGGATAAAAAGGAAGTGATCAAGACCTGCTTACAGAATTCAACTAGCTATATAGTTGTATTTTAGTTGAATTATTTGTGCTGCTCTTTGGCAAACAGGATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTT</genome_strand>
        <mrna_strand>TTTGAAGACTAGACTGGTTTTCCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCG................................................................................................................................................................................................................................................................................AGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E294999" ref_strand="+" ref_description="SGN-E294999 [cLET-17-L6]">
      <seq>ccggatctctcaggcgctgtttgtcctatcgccgtcgatcaaccctctctacggtccttttccgagggcgtgactaacaatgttgggaggtagagcagtccatcgcttactaggcaggaaatttcaatctgaatccacggcatctccaattttatcatcctttgtttccaaaaaagctcaagaagaatttggttcttttggcatgaagtccttcagaacattagcactcattggagcgggtgtatctggacttctaggttttgcgacagtagcatctgctgatgaggctgaacacggattggaatgcccaagctatccttggcctcatgcaggcattcttagttcatacgatcatgcttcgattcgtcgtggtcaccaggtttatcaacaagtatgtgcatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="27294" stop="24318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26994" g_stop="26931" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26930" i_stop="26659" i_length="272">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26658" g_stop="26584" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="139" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26583" i_stop="25915" i_length="669">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25914" g_stop="25694" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="360" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25693" i_stop="24662" i_length="1032">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24661" g_stop="24618" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="404" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E294999" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294999" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26994" e_stop="26931"/>
          <exon e_start="26658" e_stop="26584"/>
          <exon e_start="25914" e_stop="25694"/>
          <exon e_start="24661" e_stop="24618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCGGTGAGATATTATCCCTTCGTCTCTCCTCAATTTCTTCGAAGCTCTAGCTTGTTTCATCTTGAAAAGCACCCTAGGATTCCCTTACTTGTTGACGGTGTTTTGAGTAGAACGAATTTGCAGATCGCACAAAGTTGTTTGCTAGGGGAATAAGGAACTGTAGAATGAGTTAGGTTAAATAAATAGTCCGTTCTTAGGCGTATTGACTTAGGAGTAAAATAATCAAATCTGTTGTGTTTTGTTTCCTATTTTTTAATTTTCTGATTTCCTGACAGAGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACGGTATGGCTGTACATTCTTTCTTCGTAGCCGATGCTTATACTCTGAATCTTTGGTTTATGTATATAAGGAGACTTATTGCCTTCAATGTGCATACTCTCTTAATCTCTTCAAAAAATGCTTTTTTTTGTACAATGATGTCTCGTATTTGAAGTGCATTTCATTGGCAACTGGAACACATTTCAGAGCTGTTTAGTTTTTTGTTCCGCAATATGTTGGGTCATGTTTTGATTTCTGTGTAATAGAAGGATAAATTATAATAGAGGATTAGTGTTCTTAAGACTAATAGAAGTGGGTTCTATTAAAGTTTAAGTGTACTAAAATTGTATTCAATATATTCAATCATGCAAACTGGAAAGTTCTCTGTGACAATGCAAATTGAAAAAAGGACTCAGCATTTTGTGACCCTGCATTAAATTGTTTTATGTGAATGCGGTCTGCTTTTTCCTGGTTGTGTTGGCATATATAGTTAAACATGCTGTACTACCTGATAACATAACATCCTTCTTGCGGCAATAAGCTAATAAGTAGTTCGACAAATCACCACTAGCTGTGCTAGAGCTCATATCTGATGTGGGAAATTTTGTGATTGGTACTGATTTAGTTGAAAGACTTGGGTCCTATCAATTTCAAGTTGTACAAATCTTTCATTAAAACTACATAAATTTTCAGGCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTCGTGAGTTTCTCGTGAATCTCTTATCCCCCCTCCCCCTTGCTCTCTGTTTTCTTTTTCGTTCAGTACTTTCAGTTGCCCTGCCCCCCCCCCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGACTTTTACGTGTATTTCTGATAAATAAAGCTCTCTGTTGTCTTTTTTGTTCTCTGCTTTCAGTTGCCCGTCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGGCTTTTACGTGTATTTCTGATAAAGAATGTTCTGTTAAGTGTAAACTTCCATCCCTTTAAAGAAAAGGATAAGGATTTCAGGGTATCTGCAGATTTTGTGATAGAGGGTTTTGCCAGGTGCATTTCAACAATAATATGGGTCAATCACTTAAAGTACACTACATTCAATATGCATTTTTATGGCATAGCATGGAAAGACCTTTCTAAATGAATTGTTGTTCCATTCTCATGTTTGGCCTGAAAAATGGAAGCTTCTTCTATGATATGGAAAAAATGCCAAGCACCGACTATTGAAATTGCTGCTCATTTGGTTTACAATTGTATTTCTTGTCTCTTTAATTTCAAAATGCCCAATATATAGTACATCCAGACTTTTTGCATATTTAACCAGCTTATGTAGAAAAGATTCCATATTCTACGCCAATAGATACATGACATCCATTAAGTTATCATTCTCAAAAAAAAAAGATTCATGACATCCATGTACTGAATCGTCAAAAGAGCCATGCTAAGAAAGCCAAGCTTATACTTGTTGGCCCATGCCGATCAGAGAAAACACTCCTATACTGTGTCTAGTGGGGAGCTTTTTCATCTCAAAGAATAAGCAGATCTTCATATTTTGCATTTTACATTACCTTGTAGAAAGAAGAAAAAAGATATTGTGCATTGCTTAAATTTATACTGCCAGGATAAAAAGGAAGTGATCAAGACCTGCTTACAGAATTCAACTAGCTATATAGTTGTATTTTAGTTGAATTATTTGTGCTGCTCTTTGGCAAACAGGATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTT</genome_strand>
        <mrna_strand>CCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCG................................................................................................................................................................................................................................................................................AGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E282469" ref_strand="+" ref_description="SGN-E282469 [cLER-18-M19]">
      <seq>ttttccggatctctcaggcgctgtttgtcctatcgccgtcgatcaaccctctctacggtccttttccgagggcgtgactaacaatgttgggaggtagagcagtccatcgcttactaggcaggaaatttcaatctgaatccacggcatctccaattttatcatcctttgtttccaaaaaagctcaagaagaatttggttcttttggcatgaagtccttcagaacattagcactcattggagcgggtgtatctggacttctaggttttgcgacagtagcatctgctgatgaggctgaacacggattggaatgcccaagctatccttggcctcatgcaggcattcttagttcatacgatcatgcttcgattcgtcgtggtcaccaggtttatcaacaagtatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="27298" stop="24324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26998" g_stop="26931" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26930" i_stop="26659" i_length="272">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26658" g_stop="26584" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="143" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26583" i_stop="25915" i_length="669">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25914" g_stop="25694" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="364" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25693" i_stop="24662" i_length="1032">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24661" g_stop="24624" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="402" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E282469" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282469" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26998" e_stop="26931"/>
          <exon e_start="26658" e_stop="26584"/>
          <exon e_start="25914" e_stop="25694"/>
          <exon e_start="24661" e_stop="24624"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCGGTGAGATATTATCCCTTCGTCTCTCCTCAATTTCTTCGAAGCTCTAGCTTGTTTCATCTTGAAAAGCACCCTAGGATTCCCTTACTTGTTGACGGTGTTTTGAGTAGAACGAATTTGCAGATCGCACAAAGTTGTTTGCTAGGGGAATAAGGAACTGTAGAATGAGTTAGGTTAAATAAATAGTCCGTTCTTAGGCGTATTGACTTAGGAGTAAAATAATCAAATCTGTTGTGTTTTGTTTCCTATTTTTTAATTTTCTGATTTCCTGACAGAGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACGGTATGGCTGTACATTCTTTCTTCGTAGCCGATGCTTATACTCTGAATCTTTGGTTTATGTATATAAGGAGACTTATTGCCTTCAATGTGCATACTCTCTTAATCTCTTCAAAAAATGCTTTTTTTTGTACAATGATGTCTCGTATTTGAAGTGCATTTCATTGGCAACTGGAACACATTTCAGAGCTGTTTAGTTTTTTGTTCCGCAATATGTTGGGTCATGTTTTGATTTCTGTGTAATAGAAGGATAAATTATAATAGAGGATTAGTGTTCTTAAGACTAATAGAAGTGGGTTCTATTAAAGTTTAAGTGTACTAAAATTGTATTCAATATATTCAATCATGCAAACTGGAAAGTTCTCTGTGACAATGCAAATTGAAAAAAGGACTCAGCATTTTGTGACCCTGCATTAAATTGTTTTATGTGAATGCGGTCTGCTTTTTCCTGGTTGTGTTGGCATATATAGTTAAACATGCTGTACTACCTGATAACATAACATCCTTCTTGCGGCAATAAGCTAATAAGTAGTTCGACAAATCACCACTAGCTGTGCTAGAGCTCATATCTGATGTGGGAAATTTTGTGATTGGTACTGATTTAGTTGAAAGACTTGGGTCCTATCAATTTCAAGTTGTACAAATCTTTCATTAAAACTACATAAATTTTCAGGCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTCGTGAGTTTCTCGTGAATCTCTTATCCCCCCTCCCCCTTGCTCTCTGTTTTCTTTTTCGTTCAGTACTTTCAGTTGCCCTGCCCCCCCCCCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGACTTTTACGTGTATTTCTGATAAATAAAGCTCTCTGTTGTCTTTTTTGTTCTCTGCTTTCAGTTGCCCGTCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGGCTTTTACGTGTATTTCTGATAAAGAATGTTCTGTTAAGTGTAAACTTCCATCCCTTTAAAGAAAAGGATAAGGATTTCAGGGTATCTGCAGATTTTGTGATAGAGGGTTTTGCCAGGTGCATTTCAACAATAATATGGGTCAATCACTTAAAGTACACTACATTCAATATGCATTTTTATGGCATAGCATGGAAAGACCTTTCTAAATGAATTGTTGTTCCATTCTCATGTTTGGCCTGAAAAATGGAAGCTTCTTCTATGATATGGAAAAAATGCCAAGCACCGACTATTGAAATTGCTGCTCATTTGGTTTACAATTGTATTTCTTGTCTCTTTAATTTCAAAATGCCCAATATATAGTACATCCAGACTTTTTGCATATTTAACCAGCTTATGTAGAAAAGATTCCATATTCTACGCCAATAGATACATGACATCCATTAAGTTATCATTCTCAAAAAAAAAAGATTCATGACATCCATGTACTGAATCGTCAAAAGAGCCATGCTAAGAAAGCCAAGCTTATACTTGTTGGCCCATGCCGATCAGAGAAAACACTCCTATACTGTGTCTAGTGGGGAGCTTTTTCATCTCAAAGAATAAGCAGATCTTCATATTTTGCATTTTACATTACCTTGTAGAAAGAAGAAAAAAGATATTGTGCATTGCTTAAATTTATACTGCCAGGATAAAAAGGAAGTGATCAAGACCTGCTTACAGAATTCAACTAGCTATATAGTTGTATTTTAGTTGAATTATTTGTGCTGCTCTTTGGCAAACAGGATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTG</genome_strand>
        <mrna_strand>TTTTCCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCG................................................................................................................................................................................................................................................................................AGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E245036" ref_strand="+" ref_description="SGN-E245036 [cLEF-13-E2]">
      <seq>aaacctcctcctcttagaattttgtgaatagttttgaagactagactggttttccggatctctcaggcgctgtttgtcctatcgccgtcaatcaaccctctctacggtccttttccgagggcgtgactaacaatgttgggaggcagagcagtccatcgcttactacgcaggaaatttcaatctgaatccacggcatctcctattttatcatcctttgtttccaaaaaagctcaagaagaattaggttcttttggcatgaagtccttcagaacattagcactcattggagcgagtgtatctggacttctaagttctgcgacagtagcatctgctgatgaggctgaacacggagtggaatgcccaagctatccttggcctcatgcaggcattcttagttcatacgatcatgcttcgattcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="27347" stop="25388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27047" g_stop="26931" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26930" i_stop="26659" i_length="272">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26658" g_stop="26584" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="192" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26583" i_stop="25915" i_length="669">
            <donor d_prob="0.858" d_score="0.96"/>
            <acceptor a_prob="0.831" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25914" g_stop="25694" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="413" r_length="221" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E245036" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245036" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27047" e_stop="26931"/>
          <exon e_start="26658" e_stop="26584"/>
          <exon e_start="25914" e_stop="25694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCTCCTCCTCTTAGAATTTTCTGAATAGTTTTGAAGACTAGACTGGTTTTCCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCGGTGAGATATTATCCCTTCGTCTCTCCTCAATTTCTTCGAAGCTCTAGCTTGTTTCATCTTGAAAAGCACCCTAGGATTCCCTTACTTGTTGACGGTGTTTTGAGTAGAACGAATTTGCAGATCGCACAAAGTTGTTTGCTAGGGGAATAAGGAACTGTAGAATGAGTTAGGTTAAATAAATAGTCCGTTCTTAGGCGTATTGACTTAGGAGTAAAATAATCAAATCTGTTGTGTTTTGTTTCCTATTTTTTAATTTTCTGATTTCCTGACAGAGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACGGTATGGCTGTACATTCTTTCTTCGTAGCCGATGCTTATACTCTGAATCTTTGGTTTATGTATATAAGGAGACTTATTGCCTTCAATGTGCATACTCTCTTAATCTCTTCAAAAAATGCTTTTTTTTGTACAATGATGTCTCGTATTTGAAGTGCATTTCATTGGCAACTGGAACACATTTCAGAGCTGTTTAGTTTTTTGTTCCGCAATATGTTGGGTCATGTTTTGATTTCTGTGTAATAGAAGGATAAATTATAATAGAGGATTAGTGTTCTTAAGACTAATAGAAGTGGGTTCTATTAAAGTTTAAGTGTACTAAAATTGTATTCAATATATTCAATCATGCAAACTGGAAAGTTCTCTGTGACAATGCAAATTGAAAAAAGGACTCAGCATTTTGTGACCCTGCATTAAATTGTTTTATGTGAATGCGGTCTGCTTTTTCCTGGTTGTGTTGGCATATATAGTTAAACATGCTGTACTACCTGATAACATAACATCCTTCTTGCGGCAATAAGCTAATAAGTAGTTCGACAAATCACCACTAGCTGTGCTAGAGCTCATATCTGATGTGGGAAATTTTGTGATTGGTACTGATTTAGTTGAAAGACTTGGGTCCTATCAATTTCAAGTTGTACAAATCTTTCATTAAAACTACATAAATTTTCAGGCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTC</genome_strand>
        <mrna_strand>AAACCTCCTCCTCTTAGAATTTTGTGAATAGTTTTGAAGACTAGACTGGTTTTCCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCAATCAACCCTCTCTACGGTCCTTTTCCG................................................................................................................................................................................................................................................................................AGGGCGTGACTAACAATGTTGGGAGGCAGAGCAGTCCATCGCTTACTACGCAGGAAATTTCAATCTGAATCCACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCTCCTATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTAGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGAGTGTATCTGGACTTCTAAGTTCTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGAGTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E267820" ref_strand="+" ref_description="SGN-E267820 [cLEI-12-G9]">
      <seq>ttttgaagactagactggttttccggatctctcaggcgctgtttgtcctatcgccgtcgatcaaccctctctacggtccttttccgagggcgtgactaacaatgttgggaggtagagcagtccatcgcttactaggcaggaaatttcaatctgaatccacggcatctccaattttatcatcctttgtttccaaaaaagctcaagaagaatttggttcttttggcatgaagtccttcagaacattagcactcattggagcgggtgtatctggacttctaggttttgcgacagtagcatctgctgatgaggctgaacacggattggaatgcccaagctatccttggcctcatgcaggcattctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="27316" stop="25414"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27016" g_stop="26931" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26930" i_stop="26659" i_length="272">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26658" g_stop="26584" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="161" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26583" i_stop="25915" i_length="669">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25914" g_stop="25714" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="362" r_length="201" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E267820" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>362</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267820" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27016" e_stop="26931"/>
          <exon e_start="26658" e_stop="26584"/>
          <exon e_start="25914" e_stop="25714"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGAAGACTAGACTGGTTTTCCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCGGTGAGATATTATCCCTTCGTCTCTCCTCAATTTCTTCGAAGCTCTAGCTTGTTTCATCTTGAAAAGCACCCTAGGATTCCCTTACTTGTTGACGGTGTTTTGAGTAGAACGAATTTGCAGATCGCACAAAGTTGTTTGCTAGGGGAATAAGGAACTGTAGAATGAGTTAGGTTAAATAAATAGTCCGTTCTTAGGCGTATTGACTTAGGAGTAAAATAATCAAATCTGTTGTGTTTTGTTTCCTATTTTTTAATTTTCTGATTTCCTGACAGAGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACGGTATGGCTGTACATTCTTTCTTCGTAGCCGATGCTTATACTCTGAATCTTTGGTTTATGTATATAAGGAGACTTATTGCCTTCAATGTGCATACTCTCTTAATCTCTTCAAAAAATGCTTTTTTTTGTACAATGATGTCTCGTATTTGAAGTGCATTTCATTGGCAACTGGAACACATTTCAGAGCTGTTTAGTTTTTTGTTCCGCAATATGTTGGGTCATGTTTTGATTTCTGTGTAATAGAAGGATAAATTATAATAGAGGATTAGTGTTCTTAAGACTAATAGAAGTGGGTTCTATTAAAGTTTAAGTGTACTAAAATTGTATTCAATATATTCAATCATGCAAACTGGAAAGTTCTCTGTGACAATGCAAATTGAAAAAAGGACTCAGCATTTTGTGACCCTGCATTAAATTGTTTTATGTGAATGCGGTCTGCTTTTTCCTGGTTGTGTTGGCATATATAGTTAAACATGCTGTACTACCTGATAACATAACATCCTTCTTGCGGCAATAAGCTAATAAGTAGTTCGACAAATCACCACTAGCTGTGCTAGAGCTCATATCTGATGTGGGAAATTTTGTGATTGGTACTGATTTAGTTGAAAGACTTGGGTCCTATCAATTTCAAGTTGTACAAATCTTTCATTAAAACTACATAAATTTTCAGGCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTT</genome_strand>
        <mrna_strand>TTTTGAAGACTAGACTGGTTTTCCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCG................................................................................................................................................................................................................................................................................AGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E202796" ref_strand="+" ref_description="SGN-E202796 [cLEB-1-C19]">
      <seq>gcacgaggtttccaaaaaagctcaagaagaatttggttcttttggcatgaagtccttcagaacattagcactcattggagcgggtgtatctggacttctaggttttgcgacagtagcatctgctgatgaggctgaacacggattggaatgcccaagctatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="26190" stop="25436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25897" g_stop="25736" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E202796" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>162</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202796" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25897" e_stop="25736"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCC</genome_strand>
        <mrna_strand>GCACGAGGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E700477" ref_strand="+" ref_description="SGN-E700477 [FA13BA03]">
      <seq>attattacaacataatgataagatcaacagcaaagcacagtttcgcaaaacccatcattcttcttcttgcatttgttgctcttctagcaatttccttgacccgcgattttcattccgcttcttcttctgcttatgtttcccttgctaccacttgggctcctgacaagtaccgtattaatgtctccaatcaggtaagttaagagcatttgggttgcttcaactaattactacgaaattatgatctattttgcattttgtagaatcaggatgtaggaggaggaagtaataaggatcgttaccctgagagagcgttatccatgacctatgctgatttgcctgctcctgaattgaaatgggaacagatggcatctgcacctgtggttcgtttggatggctattctcttcagattaaggatttgcttttcgtttttgcaggatatgaaaacctagaccatgtgcattctcatgttgatgtttacaattttacatcaaatacatggacggagagttttgcaatacctaaagatatggcaaattcacatttaggggtggctactgatggaagatacatatatatagtgtcaggacaatatggtccccaatgcaggggacctacagcgaaaacatttgttttggacacacacaccagaaaatgggaaagcttgccaccattaccagcaccagggtatgcaccagcaactcaactttggaaaggcaggctacatgtgatgggtggaggcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="+" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="27484" stop="29341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27784" g_stop="28238" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="455" r_length="455" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28239" i_stop="28316" i_length="78">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.014" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28317" g_stop="28546" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="685" r_length="230" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28547" i_stop="28984" i_length="438">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28985" g_stop="29041" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="686" r_stop="742" r_length="57" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="+" ref_id="SGN-E700477" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700477" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27784" e_stop="28238"/>
          <exon e_start="28317" e_stop="28546"/>
          <exon e_start="28985" e_stop="29041"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATTACAACATAATGATAAGATCAACAGCAAAGCACAGTTTCGCAAAACCCATCATTCTTCTTCTTGCATTTGTTGCTCTTCTAGCAATTTCCTTGACCCGCGATTTTCATTCCGCTTCTTCTTCTGCTTATGTTTCCCTTGCTACCACTTGGGCTCCTGACAAGTACCGTATTAATGTCTCCAATCAGGTAAGTTAAGAGCATTTGGGTTGCTTCAACTAATTACTACGAAATTATGATCTATTTTGCATTTTGTAGAATCAGGATGTAGGAGGAGGAAGTAATAAGGATCGTTACCCTGAGAGAGCGTTATCCATGACCTATGCTGATTTGCCTGCTCCTGAATTGAAATGGGAACAGATGGCATCTGCACCTGTGGTTCGTTTGGATGGCTATTCTCTTCAGATTAAGGATTTGCTTTTCGTTTTTGCAGGATATGAAAACCTAGACCATGTAAAAATCTTTTTCCCCATTTTTTTTTAATTAGATTGAAAATTGGCTAGTTAACTATACTAATTACACTATCTATAGGTGCATTCTCATGTTGATGTTTACAATTTTACATCAAATACATGGACGGAGAGTTTTGCAATACCTAAAGATATGGCAAATTCACATTTAGGGGTGGCTACTGATGGAAGATACATATATATAGTGTCAGGACAATATGGTCCCCAATGCAGGGGACCTACAGCGAAAACATTTGTTTTGGACACACACACCAGAAAATGGGAAAGCTTGCCACCATTACCAGCACCAAGGTATGTATCCTTGCTGGCTTATCCAAGAACACATCTCTTTTGTAACATTAAACCTAGACTAGATTGTTACCTTATTTCTTAAATAATCACAAATAGAGATGGAGGTTGTTGATATAGTATCAGTTTCTTGTGCACCTAAAGGTGTGTGACCTAGTGGTCAATGAAGTGGTTTAAGAAACTGTGGGTTGTAGAGACCGACAAGATAATCTGTGGTTTAGGCGCACATCAAGGTTTCAAATTCTGCTGCAGATAAAAAGCCTGGTATTTTAAGTGGAAAATGGTAAGAGGAACGCGCCCATCATCCATCAAGTTTCTAACTAGCCCATCATCCATTTAGGTTCTAGATTAGCATCACATCATAGTGATAGCATATTGAAATAATAAGTAGCTTATGATGAGTTTGATACAAAACTAGAGTAATGACTAGGGTTTTTTCAGGTATGCACCAGCAACTCAGCTTTGGAAAGGCAGGCTACATGTGATGGGTGGAGGCAA</genome_strand>
        <mrna_strand>ATTATTACAACATAATGATAAGATCAACAGCAAAGCACAGTTTCGCAAAACCCATCATTCTTCTTCTTGCATTTGTTGCTCTTCTAGCAATTTCCTTGACCCGCGATTTTCATTCCGCTTCTTCTTCTGCTTATGTTTCCCTTGCTACCACTTGGGCTCCTGACAAGTACCGTATTAATGTCTCCAATCAGGTAAGTTAAGAGCATTTGGGTTGCTTCAACTAATTACTACGAAATTATGATCTATTTTGCATTTTGTAGAATCAGGATGTAGGAGGAGGAAGTAATAAGGATCGTTACCCTGAGAGAGCGTTATCCATGACCTATGCTGATTTGCCTGCTCCTGAATTGAAATGGGAACAGATGGCATCTGCACCTGTGGTTCGTTTGGATGGCTATTCTCTTCAGATTAAGGATTTGCTTTTCGTTTTTGCAGGATATGAAAACCTAGACCAT..............................................................................GTGCATTCTCATGTTGATGTTTACAATTTTACATCAAATACATGGACGGAGAGTTTTGCAATACCTAAAGATATGGCAAATTCACATTTAGGGGTGGCTACTGATGGAAGATACATATATATAGTGTCAGGACAATATGGTCCCCAATGCAGGGGACCTACAGCGAAAACATTTGTTTTGGACACACACACCAGAAAATGGGAAAGCTTGCCACCATTACCAGCACCAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGCACCAGCAACTCAACTTTGGAAAGGCAGGCTACATGTGATGGGTGGAGGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E297241" ref_strand="+" ref_description="SGN-E297241 [cLET-29-G13]">
      <seq>cacatttaggggtggctactgatggaagatacatatatatagtgtcaggacaatatggtccccaatgcaggggacctacagcgaaaacatttgttttggacacacacaccagaaaatgggaaagcttgccaccattaccagcaccaaggtatgcaccagcaactcagctttggaaaggcaggctacatgtgatgggtggaggcaaagagaatcgccacacccctggattagatcattggagtcttgcagtagctaatggaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="+" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="28099" stop="29399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28399" g_stop="28546" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28547" i_stop="28984" i_length="438">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28985" g_stop="29099" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="263" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="+" ref_id="SGN-E297241" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>263</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297241" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28399" e_stop="28546"/>
          <exon e_start="28985" e_stop="29099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATTTAGGGGTGGCTACTGATGGAAGATACATATATATAGTGTCAGGACAATATGGTCCCCAATGCAGGGGACCTACAGCGAAAACATTTGTTTTGGACACACACACCAGAAAATGGGAAAGCTTGCCACCATTACCAGCACCAAGGTATGTATCCTTGCTGGCTTATCCAAGAACACATCTCTTTTGTAACATTAAACCTAGACTAGATTGTTACCTTATTTCTTAAATAATCACAAATAGAGATGGAGGTTGTTGATATAGTATCAGTTTCTTGTGCACCTAAAGGTGTGTGACCTAGTGGTCAATGAAGTGGTTTAAGAAACTGTGGGTTGTAGAGACCGACAAGATAATCTGTGGTTTAGGCGCACATCAAGGTTTCAAATTCTGCTGCAGATAAAAAGCCTGGTATTTTAAGTGGAAAATGGTAAGAGGAACGCGCCCATCATCCATCAAGTTTCTAACTAGCCCATCATCCATTTAGGTTCTAGATTAGCATCACATCATAGTGATAGCATATTGAAATAATAAGTAGCTTATGATGAGTTTGATACAAAACTAGAGTAATGACTAGGGTTTTTTCAGGTATGCACCAGCAACTCAGCTTTGGAAAGGCAGGCTACATGTGATGGGTGGAGGCAAAGAGAATCGCCACACCCCTGGATTAGATCATTGGAGTCTTGCAGTAGCTAATGGAAAA</genome_strand>
        <mrna_strand>CACATTTAGGGGTGGCTACTGATGGAAGATACATATATATAGTGTCAGGACAATATGGTCCCCAATGCAGGGGACCTACAGCGAAAACATTTGTTTTGGACACACACACCAGAAAATGGGAAAGCTTGCCACCATTACCAGCACCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGCACCAGCAACTCAGCTTTGGAAAGGCAGGCTACATGTGATGGGTGGAGGCAAAGAGAATCGCCACACCCCTGGATTAGATCATTGGAGTCTTGCAGTAGCTAATGGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E244129" ref_strand="-" ref_description="SGN-E244129 [cLEE-1-M23](-)">
      <seq>tatgctagatgaaagtatgaaatggaaacagttgccttctatgccaaaaccagtttcgcacatagaatgttcttgggttattgtaaataattctattgttattgttggaggcacaacagagaagcatcccgtgaccaaaaggatgattttagttggagaggtgttccagttcaacctaaatacactgacatggtctgccattggaaagatgccatatcgggcaaagacaacacaggcgggattctgggatggatggttgtatttcacctctggacagcgggatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="+" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="29405" stop="30507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29705" g_stop="29891" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29892" i_stop="30109" i_length="218">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30110" g_stop="30207" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="285" r_length="98" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="+" ref_id="SGN-E244129" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>285</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244129" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="29705" e_stop="29891"/>
          <exon e_start="30110" e_stop="30207"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGCTAGATGAAAGTATGAAATGGAAACAGTTGCCTTCTATGCCAAAACCAGTTTCGCACATAGAATGTTCTTGGGTTATTGTAAATAATTCTATTGTTATTGTTGGAGGCACAACAGAGAAGCATCCCGTGACCAAAAGGATGATTTTAGTTGGAGAGGTGTTCCAGTTCAACCTAAATACACTGGTATTTTACCTCCTTTTCTTTGACTCCAATCAATCATCAATGTTGGAAATATCTCTGTCTTAATCTACATAATATACTTTTTGATGACGTTTCAGTTAAGCTTAAACGTTAAGTTACTTCTCTGTTTCATTGCCTTCCATACAAGTCACTGCATAACTTATTTTCTTTTCAACAGTCTTGACTTCTGAGTTTTTTTCTTCTTTTAACAATTTAAACAGACATGGTCTGCCATTGGAAAGATGCCATATCGGGCAAAGACAACACAGGCGGGATTCTGGGATGGATGGTTGTATTTCACCTCTGGACAGCGGGATAG</genome_strand>
        <mrna_strand>TATGCTAGATGAAAGTATGAAATGGAAACAGTTGCCTTCTATGCCAAAACCAGTTTCGCACATAGAATGTTCTTGGGTTATTGTAAATAATTCTATTGTTATTGTTGGAGGCACAACAGAGAAGCATCCCGTGACCAAAAGGATGATTTTAGTTGGAGAGGTGTTCCAGTTCAACCTAAATACACTG..........................................................................................................................................................................................................................ACATGGTCTGCCATTGGAAAGATGCCATATCGGGCAAAGACAACACAGGCGGGATTCTGGGATGGATGGTTGTATTTCACCTCTGGACAGCGGGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E244128" ref_strand="-" ref_description="SGN-E244128 [cLEE-1-M23]">
      <seq>aaaaggatgattttagttggaaaggtgttccagttcaacgtaaatacactgacatggtctgccattggaaagatgccatatcgggcaaagacaacacaggcgggactctgggatggatggttgtatttcacctctggacagcgggatagaggaccatataatccccagcccaggaaagtagtaggagatacatggagaactaagttaagattactatgaatgctaccatgtcgcttttccaatgttattgaatgtcaagttaatttggcgttggcaaagaaaaatgttgctcatacattagacctcttcattttttaaaatgtattatttaggcagttgtattagcacatttggcgacatgtccccatccgactttccttaaaagcttgtcaagatgggtctagagatccagtggaaggaaaagacgatgaccaaatactcgtatagggaagcttcatcagtggtctcttacctcctgcaaattaaaaaaaaaaaaaaaacaaaaaagtctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="+" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="29541" stop="99844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29841" g_stop="29891" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29892" i_stop="30109" i_length="218">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30110" g_stop="30518" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="460" r_length="409" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30519" i_stop="30706" i_length="188">
            <donor d_prob="0.831" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.60"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30707" g_stop="30762" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="513" r_length="53" r_score="0.571"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="+" ref_id="SGN-E244128" ref_strand="-">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244128" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="29841" e_stop="29891"/>
          <exon e_start="30110" e_stop="30518"/>
          <exon e_start="30707" e_stop="30762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGATGATTTTAGTTGGAGAGGTGTTCCAGTTCAACCTAAATACACTGGTATTTTACCTCCTTTTCTTTGACTCCAATCAATCATCAATGTTGGAAATATCTCTGTCTTAATCTACATAATATACTTTTTGATGACGTTTCAGTTAAGCTTAAACGTTAAGTTACTTCTCTGTTTCATTGCCTTCCATACAAGTCACTGCATAACTTATTTTCTTTTCAACAGTCTTGACTTCTGAGTTTTTTTCTTCTTTTAACAATTTAAACAGACATGGTCTGCCATTGGAAAGATGCCATATCGGGCAAAGACAACACAGGCGGGATTCTGGGATGGATGGTTGTATTTCACCTCTGGACAGCGGGATAGAGGACCAGATAATCCACAGCCCAGGAAAGTAGTAGGAGATACATGGAGAACTAAGTTAAGATTACTATGAATGCTACCATGTCGCTTTTCCAATGTTATTGAATGTCAAGTTAATTTGGCGTTTGCAAAGAAAAATGTTGCTCATACATTAGTACTCTTCATTTTTTAAAATGTATTATTTAGGCAGTTGTATTAGCACATTTGGCGACCTGTCCCCATCTGACTTTCCTTAAAAGCTTGTCAAGATGGGTCTAGAGATCCAGTGGAAGGAAAAGACGATAAACAAATACTCGTATAGGGAAGCTTCATCAGTAAATCTAATTACTGAAAATTACACATCTTGTGTTGCTTTTAGCATGTTCAGTTCTACACCTACTAAAGATTTTTATCCTCGAAATTATGGGGCAATACAACGCTGTTGACCATGCAAAGCATCTTATTTTACTATTATAAGTAAGTACAAAGAAGGGTATCCATTTTTGTAATAACTAAAAACTGGGAGATCTCTAACCATTCGAGGAACTTGCTACTACAAAACAAATTAACTAAAACACC</genome_strand>
        <mrna_strand>AAAAGGATGATTTTAGTTGGAAAGGTGTTCCAGTTCAACGTAAATACACTG..........................................................................................................................................................................................................................ACATGGTCTGCCATTGGAAAGATGCCATATCGGGCAAAGACAACACAGGCGGGACTCTGGGATGGATGGTTGTATTTCACCTCTGGACAGCGGGATAGAGGACCATATAATCCCCAGCCCAGGAAAGTAGTAGGAGATACATGGAGAACTAAGTTAAGATTACTATGAATGCTACCATGTCGCTTTTCCAATGTTATTGAATGTCAAGTTAATTTGGCGTTGGCAAAGAAAAATGTTGCTCATACATTAGACCTCTTCATTTTTTAAAATGTATTATTTAGGCAGTTGTATTAGCACATTTGGCGACATGTCCCCATCCGACTTTCCTTAAAAGCTTGTCAAGATGGGTCTAGAGATCCAGTGGAAGGAAAAGACGATGACCAAATACTCGTATAGGGAAGCTTCATCA............................................................................................................................................................................................GTGGTCTCTTACC--TCCTGCAAATT-AAAAAAAAAAAAAAAACAAAAAAGTCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E376689" ref_strand="+" ref_description="SGN-E376689 [TUS-19-C8](-)">
      <seq>gaatgattgaacatatcgattcatcaattaaaagattgatggcagtgttgaaaaagttgacgtttatggatgaacttatgtcatgtgatcctatgtacctaggaaaggttggtagggaaagacaaaaatttgattttgatgattttgacggtgttcctcagaaattccctatttgagactagcaaagttcagttttttgagtaaatatggcaaatgatggtgatatgttcatttgaaatataagcaaactttattcccttgacctcaaaaaatgggtaaggaaatagggggatttaactcctggttcaatcagtgggatcatgtttgttttatttgcccttttgctttttgttttgggtgggcaggttgaactgcttgctttagttttattttactatttaacaagggaactgtttagttgtagttaaagggtaggaggatgataatgttcattttttttagtggacattggggttttagttaatttgttttgtagtagcaagttcctcgaatggttaaagatttcccagtttttagttattacaaaaaaggaaacccttttttggacttacttataatagtaaaataaaatgctttgcatggtcccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="32377" stop="30328"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32077" g_stop="32044" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32043" i_stop="31287" i_length="757">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31286" g_stop="31214" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="107" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31213" i_stop="31126" i_length="88">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31125" g_stop="30631" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="602" r_length="495" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="608" polyA_stop="647"/>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E376689" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E376689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32077" e_stop="32044"/>
          <exon e_start="31286" e_stop="31214"/>
          <exon e_start="31125" e_stop="30631"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATGATTGAACATATCGATTCATCAATTAAGAGGTAAGACTTCTGTTACTTCGGTCATTGGATATGGATATTCTACATTTTACTTGTAATTAGACGGTAATTTTTCTGTCCAATGTGGTGGCTATAGGCTATAGCTACTGATTGGCTTTTTAAGAATTTAAATGTTATCTCAAACTCCAAATAAAGTTGGAATGAATTTGAACTTATGCACATGGTACTAATGATGGATGTCATGATATGCGCAAAAGAATGCCAATTTCCATCCAGCAATTTGGATATCTGCACCAATTGTACCTACATAAGGGAGATGTTTCTAAAATACTAGCGAGTGAGGGAGGGTGAAATTAAAATTTAGTAATGTTGTACATAAATAGGTTGGAAATTTTACTTTGCATCGCTTGGGGGTTATTTGGTTGGAAACTAGTTATCCCAGGATATCCTGGGAGGGATATAACTTATCCTACCATGTATATAGGATAACTTATCCCATCACTATGCTATAAATGGTGGTAAAAGTTATTTCAAACAACACATTTAAATTTTATCCTTGGACTAATTTTTTATCCCAGGACTATTTATGCTTATCCCTCACACCAAACGAGCCCTTATTGATAGTAGGGTAAGGCTAAAGGGTAGGGTTCTCCATTAGATTTACTTTAATCTTTTCATCTCTATCTCTCTGTGTACATATGTTCTAAAGAATTTTACAATATGTGAATGAAACTTATGTCATGTGATCCTATGTACATATGTTCTAAAAACTACAATGATGTATGTTTTTCTATTGCAGATTGATGGCAGTGTCGAAAAAGTTGACGTCTATGGATGAACTTATGTCATGTGATCCTATGTACCTAGGAAAGGTAAAACTATGTCAAAGTCCTCTTTCGCTAACTGCTTAATATAACAACTGTATTTTTCACTAATTTAATGTGTTTACTTGCTATGCAGGTTGGTAGGGAGAGACAGAGATTTGATTTTGATGATTTTGACGGTGTTCCTCAGAAATTCACTATCTGAGACTAGCAAAGTTCAGTTTTCTGAGTAAATATGGCAAATGATGCTGATATGTTCATTTGAAATATAAGCAAACTTTATTCCATTGACCTCAAGAAATGGCTAAGGAAATAGGTGTATTTAACTCCTGGTTCAATCAGTGGTATCATGTTTGTTTTATTTGCCCTTCTGCTTTTCGTTTTGTGTGGGCAGGTTGAACTGCTTGCTCTAGTTTTATTTTACTATCTAGCAAGGGAACTGTTTAGTTGTAGTTAGAGGCTAGGAGGATGATAATGTTCATCTTCTTTAGTGGACATTGGTGTTTTAGTTAATTTGTTTTGTAGTAGCAAGTTCCTCGAATGGTTAGAGATCTCCCAGTTTTTAGTTATTACAAAAATGGATACCCTTCTTTGTACTTACTTATAATAGTAAAATAAGATGCTTTGCATG</genome_strand>
        <mrna_strand>GAATGATTGAACATATCGATTCATCAATTAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGATGGCAGTGTTGAAAAAGTTGACGTTTATGGATGAACTTATGTCATGTGATCCTATGTACCTAGGAAAG........................................................................................GTTGGTAGGGAAAGACAAAAATTTGATTTTGATGATTTTGACGGTGTTCCTCAGAAATTCCCTATTTGAGACTAGCAAAGTTCAGTTTTTTGAGTAAATATGGCAAATGATGGTGATATGTTCATTTGAAATATAAGCAAACTTTATTCCCTTGACCTCAAAAAATGGGTAAGGAAATAGGGGGATTTAACTCCTGGTTCAATCAGTGGGATCATGTTTGTTTTATTTGCCCTTTTGCTTTTTGTTTTGGGTGGGCAGGTTGAACTGCTTGCTTTAGTTTTATTTTACTATTTAACAAGGGAACTGTTTAGTTGTAGTTAAAGGGTAGGAGGATGATAATGTTCATTTTTTTTAGTGGACATTGGGGTTTTAGTTAATTTGTTTTGTAGTAGCAAGTTCCTCGAATGGTTAAAGATTTCCCAGTTTTTAGTTATTACAAAAAAGGAAACCCTTTTTTGGACTTACTTATAATAGTAAAATAAAATGCTTTGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E266727" ref_strand="-" ref_description="SGN-E266727 [cLEI-5-P20]">
      <seq>agaagtttgaaagcgataataatcttggattagtgatgcaagtagtgtcttctatgtataagcgcaatattcagcggttaactcaaacgtacctaactctctccctccaagatattgctaacactgtccagctaagagaccccaaacaggcagaaatgcatgtgcttcagatgattgaagatggtgagatatatgcaacaatcaatcagaaggatggtatggttagatttctggaggatcttgagcagtataaaacgtgtggaatgattgaacatatcgattcatcaattaagagattgatggcagtgtcgaaaaagttgacgtctatggatgaacttatgtcatgtgatcctatgtacctaggaaaggttggtagggagagacagagatttgattttgatgattttgacggtgttcttcagaaattcactatctgagactagcaaagttcagttttctgagtaaatatggcaaatgatgctgatatgttcatttgaaatataagcaaactttattccattgacctcaagaaatggctaaggaaataggtgtatttaactcctggttcaatcagtggtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="32706" stop="30614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32566" g_stop="32553" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32552" i_stop="32405" i_length="148">
            <donor d_prob="0.831" d_score="0.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32404" g_stop="32246" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="173" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32245" i_stop="32166" i_length="80">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32165" g_stop="32044" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="295" r_length="122" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32043" i_stop="31287" i_length="757">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31286" g_stop="31214" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="368" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31213" i_stop="31126" i_length="88">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31125" g_stop="30914" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="580" r_length="212" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E266727" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266727" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="32566" e_stop="32553"/>
          <exon e_start="32404" e_stop="32246"/>
          <exon e_start="32165" e_stop="32044"/>
          <exon e_start="31286" e_stop="31214"/>
          <exon e_start="31125" e_stop="30914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGTTTGAAAGCGTAAGTTTTCTTGTGGTCAAACTGGTACATTTCCTGATCTTCTAGCAGCTAAGATGAAAGAGCATGGGTGCAAAGTTCTCAACTCCCAAACTCCCATGTTAGTCCATCTTTTGTGGAAGTTGTAACAATCTTTTCATTATATTTTCAGGATAATAATCTTGGATTAGTGATGCAAGTAGTGTCTTCTATGTATAAGCGCAATATTCAGCGGTTAACTCAAACGTACCTAACTCTCTCCCTCCAAGATATTGCTAACACTGTCCAGCTAAGAGACCCCAAACAGGCAGAAATGCATGTGCTTCAGATGGTATCCTGCTTTTTGATCTTGGATTGTGTAAGCCTTCAACTTTGAAACTTGAAATGCTGATGTTTCACTTTTGGTTATAGATTGAAGATGGTGAGATATATGCAACAATCAATCAGAAGGATGGTATGGTTAGATTTCTGGAGGATCCTGAGCAGTATAAAACGTGTGGAATGATTGAACATATCGATTCATCAATTAAGAGGTAAGACTTCTGTTACTTCGGTCATTGGATATGGATATTCTACATTTTACTTGTAATTAGACGGTAATTTTTCTGTCCAATGTGGTGGCTATAGGCTATAGCTACTGATTGGCTTTTTAAGAATTTAAATGTTATCTCAAACTCCAAATAAAGTTGGAATGAATTTGAACTTATGCACATGGTACTAATGATGGATGTCATGATATGCGCAAAAGAATGCCAATTTCCATCCAGCAATTTGGATATCTGCACCAATTGTACCTACATAAGGGAGATGTTTCTAAAATACTAGCGAGTGAGGGAGGGTGAAATTAAAATTTAGTAATGTTGTACATAAATAGGTTGGAAATTTTACTTTGCATCGCTTGGGGGTTATTTGGTTGGAAACTAGTTATCCCAGGATATCCTGGGAGGGATATAACTTATCCTACCATGTATATAGGATAACTTATCCCATCACTATGCTATAAATGGTGGTAAAAGTTATTTCAAACAACACATTTAAATTTTATCCTTGGACTAATTTTTTATCCCAGGACTATTTATGCTTATCCCTCACACCAAACGAGCCCTTATTGATAGTAGGGTAAGGCTAAAGGGTAGGGTTCTCCATTAGATTTACTTTAATCTTTTCATCTCTATCTCTCTGTGTACATATGTTCTAAAGAATTTTACAATATGTGAATGAAACTTATGTCATGTGATCCTATGTACATATGTTCTAAAAACTACAATGATGTATGTTTTTCTATTGCAGATTGATGGCAGTGTCGAAAAAGTTGACGTCTATGGATGAACTTATGTCATGTGATCCTATGTACCTAGGAAAGGTAAAACTATGTCAAAGTCCTCTTTCGCTAACTGCTTAATATAACAACTGTATTTTTCACTAATTTAATGTGTTTACTTGCTATGCAGGTTGGTAGGGAGAGACAGAGATTTGATTTTGATGATTTTGACGGTGTTCCTCAGAAATTCACTATCTGAGACTAGCAAAGTTCAGTTTTCTGAGTAAATATGGCAAATGATGCTGATATGTTCATTTGAAATATAAGCAAACTTTATTCCATTGACCTCAAGAAATGGCTAAGGAAATAGGTGTATTTAACTCCTGGTTCAATCAGTGGTAT</genome_strand>
        <mrna_strand>AGAAGTTTGAAAGC....................................................................................................................................................GATAATAATCTTGGATTAGTGATGCAAGTAGTGTCTTCTATGTATAAGCGCAATATTCAGCGGTTAACTCAAACGTACCTAACTCTCTCCCTCCAAGATATTGCTAACACTGTCCAGCTAAGAGACCCCAAACAGGCAGAAATGCATGTGCTTCAGATG................................................................................ATTGAAGATGGTGAGATATATGCAACAATCAATCAGAAGGATGGTATGGTTAGATTTCTGGAGGATCTTGAGCAGTATAAAACGTGTGGAATGATTGAACATATCGATTCATCAATTAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGATGGCAGTGTCGAAAAAGTTGACGTCTATGGATGAACTTATGTCATGTGATCCTATGTACCTAGGAAAG........................................................................................GTTGGTAGGGAGAGACAGAGATTTGATTTTGATGATTTTGACGGTGTTCTTCAGAAATTCACTATCTGAGACTAGCAAAGTTCAGTTTTCTGAGTAAATATGGCAAATGATGCTGATATGTTCATTTGAAATATAAGCAAACTTTATTCCATTGACCTCAAGAAATGGCTAAGGAAATAGGTGTATTTAACTCCTGGTTCAATCAGTGGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E266596" ref_strand="-" ref_description="SGN-E266596 [cLEI-5-N18]">
      <seq>ctctccctccaagatattgctaacactgtccagctaagagaccccttacaggcagaaatgcatgtgcttcagatgattgaagatggtgagatatatgcatctgtcaatcagaaggatggtatggttagatgtgtgtaggatcttgagcagtatattacgtgtggaatgattgaacatatcgattcatcaattaagagattgatgtcagtgtcgaaaaagtttacgtctatggatgaacttatgtcatgtgatcatatgtacctaggaaaggttggtagggagagacagagatttgattttgatgattttgacggtgttcgtcagaaattctctatatgagactagcaaagttcagttttatgagtacatatggcaaatcacgctgatatgttcatttgaaagataagcgaactttattccattgacctcaagaaatggctaaggacataggtgtatttaactcctggttcaatcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="32620" stop="30619"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32320" g_stop="32246" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32245" i_stop="32166" i_length="80">
            <donor d_prob="0.900" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32165" g_stop="32044" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="197" r_length="122" r_score="0.926"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32043" i_stop="31287" i_length="757">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31286" g_stop="31214" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="270" r_length="73" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31213" i_stop="31126" i_length="88">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31125" g_stop="30919" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="477" r_length="207" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E266596" ref_strand="-">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266596" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="32320" e_stop="32246"/>
          <exon e_start="32165" e_stop="32044"/>
          <exon e_start="31286" e_stop="31214"/>
          <exon e_start="31125" e_stop="30919"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCCCTCCAAGATATTGCTAACACTGTCCAGCTAAGAGACCCCAAACAGGCAGAAATGCATGTGCTTCAGATGGTATCCTGCTTTTTGATCTTGGATTGTGTAAGCCTTCAACTTTGAAACTTGAAATGCTGATGTTTCACTTTTGGTTATAGATTGAAGATGGTGAGATATATGCAACAATCAATCAGAAGGATGGTATGGTTAGATTTCTGGAGGATCCTGAGCAGTATAAAACGTGTGGAATGATTGAACATATCGATTCATCAATTAAGAGGTAAGACTTCTGTTACTTCGGTCATTGGATATGGATATTCTACATTTTACTTGTAATTAGACGGTAATTTTTCTGTCCAATGTGGTGGCTATAGGCTATAGCTACTGATTGGCTTTTTAAGAATTTAAATGTTATCTCAAACTCCAAATAAAGTTGGAATGAATTTGAACTTATGCACATGGTACTAATGATGGATGTCATGATATGCGCAAAAGAATGCCAATTTCCATCCAGCAATTTGGATATCTGCACCAATTGTACCTACATAAGGGAGATGTTTCTAAAATACTAGCGAGTGAGGGAGGGTGAAATTAAAATTTAGTAATGTTGTACATAAATAGGTTGGAAATTTTACTTTGCATCGCTTGGGGGTTATTTGGTTGGAAACTAGTTATCCCAGGATATCCTGGGAGGGATATAACTTATCCTACCATGTATATAGGATAACTTATCCCATCACTATGCTATAAATGGTGGTAAAAGTTATTTCAAACAACACATTTAAATTTTATCCTTGGACTAATTTTTTATCCCAGGACTATTTATGCTTATCCCTCACACCAAACGAGCCCTTATTGATAGTAGGGTAAGGCTAAAGGGTAGGGTTCTCCATTAGATTTACTTTAATCTTTTCATCTCTATCTCTCTGTGTACATATGTTCTAAAGAATTTTACAATATGTGAATGAAACTTATGTCATGTGATCCTATGTACATATGTTCTAAAAACTACAATGATGTATGTTTTTCTATTGCAGATTGATGGCAGTGTCGAAAAAGTTGACGTCTATGGATGAACTTATGTCATGTGATCCTATGTACCTAGGAAAGGTAAAACTATGTCAAAGTCCTCTTTCGCTAACTGCTTAATATAACAACTGTATTTTTCACTAATTTAATGTGTTTACTTGCTATGCAGGTTGGTAGGGAGAGACAGAGATTTGATTTTGATGATTTTGACGGTGTTCCTCAGAAATTCACTATCTGAGACTAGCAAAGTTCAGTTTTCTGAGTAAATATGGCAAATGATGCTGATATGTTCATTTGAAATATAAGCAAACTTTATTCCATTGACCTCAAGAAATGGCTAAGGAAATAGGTGTATTTAACTCCTGGTTCAATCAGT</genome_strand>
        <mrna_strand>CTCTCCCTCCAAGATATTGCTAACACTGTCCAGCTAAGAGACCCCTTACAGGCAGAAATGCATGTGCTTCAGATG................................................................................ATTGAAGATGGTGAGATATATGCATCTGTCAATCAGAAGGATGGTATGGTTAGATGTGTGTAGGATCTTGAGCAGTATATTACGTGTGGAATGATTGAACATATCGATTCATCAATTAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGATGTCAGTGTCGAAAAAGTTTACGTCTATGGATGAACTTATGTCATGTGATCATATGTACCTAGGAAAG........................................................................................GTTGGTAGGGAGAGACAGAGATTTGATTTTGATGATTTTGACGGTGTTCGTCAGAAATTCTCTATATGAGACTAGCAAAGTTCAGTTTTATGAGTACATATGGCAAATCACGCTGATATGTTCATTTGAAAGATAAGCGAACTTTATTCCATTGACCTCAAGAAATGGCTAAGGACATAGGTGTATTTAACTCCTGGTTCAATCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E376690" ref_strand="+" ref_description="SGN-E376690 [TUS-19-C8]">
      <seq>ttccgtggctcaaaggaacttgaagaatttctctcagccctacctggagttatcaaacagttatgggactggaagaatctctgaacttgaaacatttgttcaaacaaacaaggagaagtttgaaagcgataataatcttggattagtgatgcaagtagtgtcttctatgtataagcgcaatattcagcggttaactcaaacgtacctaactctctccctccaagatattgctaacactgtccagctaagagaccccaaacaggcagaaatgcatgtgcttcagatgattgaagatggtgagatatatgcaacaatcaatcagaaggatggtatggttagatttctggaggatcctgagcagtataaaacgtgtggaatgattgaacatatcgattcatcaattaagagattgatggcagtgtcgaaaaagttgacgtctatggatgaacttatgtcatgtgatcctatgtacctaggaaaggttggtagggagagacagagatttgattttgatgattttgacggtgttcctcagaaattcactatctgagactagcaaagttcagttttctgagtaaatatggcaaatgatgctgatatgttcatttgaaatataagcaaactttattccattgacctcaagaaatggctaaggaaataggtgtatttaactcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="33511" stop="30631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33211" g_stop="33175" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33174" i_stop="32643" i_length="532">
            <donor d_prob="0.976" d_score="0.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32642" g_stop="32553" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="127" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32552" i_stop="32405" i_length="148">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32404" g_stop="32246" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="286" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32245" i_stop="32166" i_length="80">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32165" g_stop="32044" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="408" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32043" i_stop="31287" i_length="757">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31286" g_stop="31214" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="481" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="31213" i_stop="31126" i_length="88">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="31125" g_stop="30931" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="676" r_length="195" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E376690" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E376690" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33211" e_stop="33175"/>
          <exon e_start="32642" e_stop="32553"/>
          <exon e_start="32404" e_stop="32246"/>
          <exon e_start="32165" e_stop="32044"/>
          <exon e_start="31286" e_stop="31214"/>
          <exon e_start="31125" e_stop="30931"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCGTGGCTCAAAGGAACTTGAAGAATTTCTCTCAGGTAATTATTTCAACTGTGCAAACATTGATTCCAAGTAGCACCGACTGTTCCACCCAAAGCAAATTGAAAGGAATATTTTCCCTCAAATGATTTGATGACAATGCAAGCTCAGTTAAGTATGCACAGTTGGCGTTACAATGTTGATGTTAGAAATCTTGTACTGATTCAAGTGTTGTTTCAAAGTATAAGCATTGCATATTTTGTATTAGCACTTAGCAGGCTAGGCATGAAACTACATAAATGATAATGAAACAAGAAATATATCAGTATCTAATAGAAGTGAAAGAAAGAACGCATTTTCGTGTATCGGAAAAGTCACTGTTTAGAGTCCTCAAAATCTGTTTAGTGTACTCAGCGAAGAAATAAGGTGACCAGCTGGAAGCTTCTGAAATCCCAACAATATTTTCTAATATAAAATGAATCCAATTTGGGAGGAGACTGAAGAGACGCCTCATCAAGGATAATTCTCTGTCATGTGTGGTCCTTATGTGTGGAATATAACATAAACTACTTATTATTTCTTTTTGAGCAGCCCTACCTGGAGTTATCAAACAGTTATGGGACTGGAAGAATCTCTGAACTTGAAACATTTGTTCAAACAAACAAGGAGAAGTTTGAAAGCGTAAGTTTTCTTGTGGTCAAACTGGTACATTTCCTGATCTTCTAGCAGCTAAGATGAAAGAGCATGGGTGCAAAGTTCTCAACTCCCAAACTCCCATGTTAGTCCATCTTTTGTGGAAGTTGTAACAATCTTTTCATTATATTTTCAGGATAATAATCTTGGATTAGTGATGCAAGTAGTGTCTTCTATGTATAAGCGCAATATTCAGCGGTTAACTCAAACGTACCTAACTCTCTCCCTCCAAGATATTGCTAACACTGTCCAGCTAAGAGACCCCAAACAGGCAGAAATGCATGTGCTTCAGATGGTATCCTGCTTTTTGATCTTGGATTGTGTAAGCCTTCAACTTTGAAACTTGAAATGCTGATGTTTCACTTTTGGTTATAGATTGAAGATGGTGAGATATATGCAACAATCAATCAGAAGGATGGTATGGTTAGATTTCTGGAGGATCCTGAGCAGTATAAAACGTGTGGAATGATTGAACATATCGATTCATCAATTAAGAGGTAAGACTTCTGTTACTTCGGTCATTGGATATGGATATTCTACATTTTACTTGTAATTAGACGGTAATTTTTCTGTCCAATGTGGTGGCTATAGGCTATAGCTACTGATTGGCTTTTTAAGAATTTAAATGTTATCTCAAACTCCAAATAAAGTTGGAATGAATTTGAACTTATGCACATGGTACTAATGATGGATGTCATGATATGCGCAAAAGAATGCCAATTTCCATCCAGCAATTTGGATATCTGCACCAATTGTACCTACATAAGGGAGATGTTTCTAAAATACTAGCGAGTGAGGGAGGGTGAAATTAAAATTTAGTAATGTTGTACATAAATAGGTTGGAAATTTTACTTTGCATCGCTTGGGGGTTATTTGGTTGGAAACTAGTTATCCCAGGATATCCTGGGAGGGATATAACTTATCCTACCATGTATATAGGATAACTTATCCCATCACTATGCTATAAATGGTGGTAAAAGTTATTTCAAACAACACATTTAAATTTTATCCTTGGACTAATTTTTTATCCCAGGACTATTTATGCTTATCCCTCACACCAAACGAGCCCTTATTGATAGTAGGGTAAGGCTAAAGGGTAGGGTTCTCCATTAGATTTACTTTAATCTTTTCATCTCTATCTCTCTGTGTACATATGTTCTAAAGAATTTTACAATATGTGAATGAAACTTATGTCATGTGATCCTATGTACATATGTTCTAAAAACTACAATGATGTATGTTTTTCTATTGCAGATTGATGGCAGTGTCGAAAAAGTTGACGTCTATGGATGAACTTATGTCATGTGATCCTATGTACCTAGGAAAGGTAAAACTATGTCAAAGTCCTCTTTCGCTAACTGCTTAATATAACAACTGTATTTTTCACTAATTTAATGTGTTTACTTGCTATGCAGGTTGGTAGGGAGAGACAGAGATTTGATTTTGATGATTTTGACGGTGTTCCTCAGAAATTCACTATCTGAGACTAGCAAAGTTCAGTTTTCTGAGTAAATATGGCAAATGATGCTGATATGTTCATTTGAAATATAAGCAAACTTTATTCCATTGACCTCAAGAAATGGCTAAGGAAATAGGTGTATTTAACTCCT</genome_strand>
        <mrna_strand>TTCCGTGGCTCAAAGGAACTTGAAGAATTTCTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCTACCTGGAGTTATCAAACAGTTATGGGACTGGAAGAATCTCTGAACTTGAAACATTTGTTCAAACAAACAAGGAGAAGTTTGAAAGC....................................................................................................................................................GATAATAATCTTGGATTAGTGATGCAAGTAGTGTCTTCTATGTATAAGCGCAATATTCAGCGGTTAACTCAAACGTACCTAACTCTCTCCCTCCAAGATATTGCTAACACTGTCCAGCTAAGAGACCCCAAACAGGCAGAAATGCATGTGCTTCAGATG................................................................................ATTGAAGATGGTGAGATATATGCAACAATCAATCAGAAGGATGGTATGGTTAGATTTCTGGAGGATCCTGAGCAGTATAAAACGTGTGGAATGATTGAACATATCGATTCATCAATTAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGATGGCAGTGTCGAAAAAGTTGACGTCTATGGATGAACTTATGTCATGTGATCCTATGTACCTAGGAAAG........................................................................................GTTGGTAGGGAGAGACAGAGATTTGATTTTGATGATTTTGACGGTGTTCCTCAGAAATTCACTATCTGAGACTAGCAAAGTTCAGTTTTCTGAGTAAATATGGCAAATGATGCTGATATGTTCATTTGAAATATAAGCAAACTTTATTCCATTGACCTCAAGAAATGGCTAAGGAAATAGGTGTATTTAACTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E231597" ref_strand="+" ref_description="SGN-E231597 [cLED-4-P14]">
      <seq>ttccgtggctcaaaggaacttgaagaatttctctcagccctacctggagttatcaaacagttatgggactggaagaatctctgaacttgaaacatttgttcaaacaaacaaggagaagtttgaaagcgataataatcttggattagtgatgcaagtagtgtcttctatgtataagcgcaatattcagcggttaactcaaacgtacctaactctctccctccaagatattgctaacactgtccagctaagagaccccaaacaggcagaaatgcatgtgcttcagatgattgaagatggtgagatatatgcaacaatcaatcagaaggatggtatggttagatttctggaggatcctgagcagtataaaacgtgtggaatgattgaacatatcgattcatcaattaagagattgatggcagtgtcgaaaaagttgacgtctatggatgaacttatgtcatgtgatcctatgtacctaggaaaggttggtagggagagacagagatttgattttgatgattttgacggtgttcctcagaaattcactatctgagactagcaaagttcagttttctgagtaaatatggcaaatgatgctgatatgttcatttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="33511" stop="30697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33211" g_stop="33175" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33174" i_stop="32643" i_length="532">
            <donor d_prob="0.976" d_score="0.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32642" g_stop="32553" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="127" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32552" i_stop="32405" i_length="148">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32404" g_stop="32246" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="286" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32245" i_stop="32166" i_length="80">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32165" g_stop="32044" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="408" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32043" i_stop="31287" i_length="757">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31286" g_stop="31214" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="481" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="31213" i_stop="31126" i_length="88">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="31125" g_stop="30997" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="610" r_length="129" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E231597" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231597" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33211" e_stop="33175"/>
          <exon e_start="32642" e_stop="32553"/>
          <exon e_start="32404" e_stop="32246"/>
          <exon e_start="32165" e_stop="32044"/>
          <exon e_start="31286" e_stop="31214"/>
          <exon e_start="31125" e_stop="30997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCGTGGCTCAAAGGAACTTGAAGAATTTCTCTCAGGTAATTATTTCAACTGTGCAAACATTGATTCCAAGTAGCACCGACTGTTCCACCCAAAGCAAATTGAAAGGAATATTTTCCCTCAAATGATTTGATGACAATGCAAGCTCAGTTAAGTATGCACAGTTGGCGTTACAATGTTGATGTTAGAAATCTTGTACTGATTCAAGTGTTGTTTCAAAGTATAAGCATTGCATATTTTGTATTAGCACTTAGCAGGCTAGGCATGAAACTACATAAATGATAATGAAACAAGAAATATATCAGTATCTAATAGAAGTGAAAGAAAGAACGCATTTTCGTGTATCGGAAAAGTCACTGTTTAGAGTCCTCAAAATCTGTTTAGTGTACTCAGCGAAGAAATAAGGTGACCAGCTGGAAGCTTCTGAAATCCCAACAATATTTTCTAATATAAAATGAATCCAATTTGGGAGGAGACTGAAGAGACGCCTCATCAAGGATAATTCTCTGTCATGTGTGGTCCTTATGTGTGGAATATAACATAAACTACTTATTATTTCTTTTTGAGCAGCCCTACCTGGAGTTATCAAACAGTTATGGGACTGGAAGAATCTCTGAACTTGAAACATTTGTTCAAACAAACAAGGAGAAGTTTGAAAGCGTAAGTTTTCTTGTGGTCAAACTGGTACATTTCCTGATCTTCTAGCAGCTAAGATGAAAGAGCATGGGTGCAAAGTTCTCAACTCCCAAACTCCCATGTTAGTCCATCTTTTGTGGAAGTTGTAACAATCTTTTCATTATATTTTCAGGATAATAATCTTGGATTAGTGATGCAAGTAGTGTCTTCTATGTATAAGCGCAATATTCAGCGGTTAACTCAAACGTACCTAACTCTCTCCCTCCAAGATATTGCTAACACTGTCCAGCTAAGAGACCCCAAACAGGCAGAAATGCATGTGCTTCAGATGGTATCCTGCTTTTTGATCTTGGATTGTGTAAGCCTTCAACTTTGAAACTTGAAATGCTGATGTTTCACTTTTGGTTATAGATTGAAGATGGTGAGATATATGCAACAATCAATCAGAAGGATGGTATGGTTAGATTTCTGGAGGATCCTGAGCAGTATAAAACGTGTGGAATGATTGAACATATCGATTCATCAATTAAGAGGTAAGACTTCTGTTACTTCGGTCATTGGATATGGATATTCTACATTTTACTTGTAATTAGACGGTAATTTTTCTGTCCAATGTGGTGGCTATAGGCTATAGCTACTGATTGGCTTTTTAAGAATTTAAATGTTATCTCAAACTCCAAATAAAGTTGGAATGAATTTGAACTTATGCACATGGTACTAATGATGGATGTCATGATATGCGCAAAAGAATGCCAATTTCCATCCAGCAATTTGGATATCTGCACCAATTGTACCTACATAAGGGAGATGTTTCTAAAATACTAGCGAGTGAGGGAGGGTGAAATTAAAATTTAGTAATGTTGTACATAAATAGGTTGGAAATTTTACTTTGCATCGCTTGGGGGTTATTTGGTTGGAAACTAGTTATCCCAGGATATCCTGGGAGGGATATAACTTATCCTACCATGTATATAGGATAACTTATCCCATCACTATGCTATAAATGGTGGTAAAAGTTATTTCAAACAACACATTTAAATTTTATCCTTGGACTAATTTTTTATCCCAGGACTATTTATGCTTATCCCTCACACCAAACGAGCCCTTATTGATAGTAGGGTAAGGCTAAAGGGTAGGGTTCTCCATTAGATTTACTTTAATCTTTTCATCTCTATCTCTCTGTGTACATATGTTCTAAAGAATTTTACAATATGTGAATGAAACTTATGTCATGTGATCCTATGTACATATGTTCTAAAAACTACAATGATGTATGTTTTTCTATTGCAGATTGATGGCAGTGTCGAAAAAGTTGACGTCTATGGATGAACTTATGTCATGTGATCCTATGTACCTAGGAAAGGTAAAACTATGTCAAAGTCCTCTTTCGCTAACTGCTTAATATAACAACTGTATTTTTCACTAATTTAATGTGTTTACTTGCTATGCAGGTTGGTAGGGAGAGACAGAGATTTGATTTTGATGATTTTGACGGTGTTCCTCAGAAATTCACTATCTGAGACTAGCAAAGTTCAGTTTTCTGAGTAAATATGGCAAATGATGCTGATATGTTCATTTGA</genome_strand>
        <mrna_strand>TTCCGTGGCTCAAAGGAACTTGAAGAATTTCTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCTACCTGGAGTTATCAAACAGTTATGGGACTGGAAGAATCTCTGAACTTGAAACATTTGTTCAAACAAACAAGGAGAAGTTTGAAAGC....................................................................................................................................................GATAATAATCTTGGATTAGTGATGCAAGTAGTGTCTTCTATGTATAAGCGCAATATTCAGCGGTTAACTCAAACGTACCTAACTCTCTCCCTCCAAGATATTGCTAACACTGTCCAGCTAAGAGACCCCAAACAGGCAGAAATGCATGTGCTTCAGATG................................................................................ATTGAAGATGGTGAGATATATGCAACAATCAATCAGAAGGATGGTATGGTTAGATTTCTGGAGGATCCTGAGCAGTATAAAACGTGTGGAATGATTGAACATATCGATTCATCAATTAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGATGGCAGTGTCGAAAAAGTTGACGTCTATGGATGAACTTATGTCATGTGATCCTATGTACCTAGGAAAG........................................................................................GTTGGTAGGGAGAGACAGAGATTTGATTTTGATGATTTTGACGGTGTTCCTCAGAAATTCACTATCTGAGACTAGCAAAGTTCAGTTTTCTGAGTAAATATGGCAAATGATGCTGATATGTTCATTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E251731" ref_strand="+" ref_description="SGN-E251731 [cLEG-15-M6]">
      <seq>gaacttgaagaatttctctcagccctacctggagttatcaaacagttatgggactggaagaatctctgaacttgaaacatttgttcaaacaaacaaggagaagtttgaaagcgataataatcttggattagtgatgcaagtagtgtcttctatgtataagcgcaatattcagcggttaactcaaacgtacctaactctctccctccaagatattgctaacactgtccagctaagagaccccaaacaggcagaaatgcatgtgcttcagatgattgaagatggtgagatatatgcaacaatcaatcagaaggatggtatggttagatttctggaggatcctgagcagtataaaacgtgtggaatgattgaacatatcgattcatcaattaagagattgatggcagtgtcgaaaaagttgacgtctatggatgaacttatgtcatgtgatcctatgtacctaggaaaggttggtagggagagacagagatttgattttgatgattttgacggtgttcctcagaaattcactatctgagactagcaaagttcagttttctgagtaaatatggcaaatgatgctgatatgttcatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="33496" stop="30698"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33196" g_stop="33175" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33174" i_stop="32643" i_length="532">
            <donor d_prob="0.976" d_score="0.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32642" g_stop="32553" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="112" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32552" i_stop="32405" i_length="148">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32404" g_stop="32246" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="271" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32245" i_stop="32166" i_length="80">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32165" g_stop="32044" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="393" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32043" i_stop="31287" i_length="757">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31286" g_stop="31214" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="466" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="31213" i_stop="31126" i_length="88">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="31125" g_stop="30998" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="594" r_length="128" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E251731" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251731" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33196" e_stop="33175"/>
          <exon e_start="32642" e_stop="32553"/>
          <exon e_start="32404" e_stop="32246"/>
          <exon e_start="32165" e_stop="32044"/>
          <exon e_start="31286" e_stop="31214"/>
          <exon e_start="31125" e_stop="30998"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTTGAAGAATTTCTCTCAGGTAATTATTTCAACTGTGCAAACATTGATTCCAAGTAGCACCGACTGTTCCACCCAAAGCAAATTGAAAGGAATATTTTCCCTCAAATGATTTGATGACAATGCAAGCTCAGTTAAGTATGCACAGTTGGCGTTACAATGTTGATGTTAGAAATCTTGTACTGATTCAAGTGTTGTTTCAAAGTATAAGCATTGCATATTTTGTATTAGCACTTAGCAGGCTAGGCATGAAACTACATAAATGATAATGAAACAAGAAATATATCAGTATCTAATAGAAGTGAAAGAAAGAACGCATTTTCGTGTATCGGAAAAGTCACTGTTTAGAGTCCTCAAAATCTGTTTAGTGTACTCAGCGAAGAAATAAGGTGACCAGCTGGAAGCTTCTGAAATCCCAACAATATTTTCTAATATAAAATGAATCCAATTTGGGAGGAGACTGAAGAGACGCCTCATCAAGGATAATTCTCTGTCATGTGTGGTCCTTATGTGTGGAATATAACATAAACTACTTATTATTTCTTTTTGAGCAGCCCTACCTGGAGTTATCAAACAGTTATGGGACTGGAAGAATCTCTGAACTTGAAACATTTGTTCAAACAAACAAGGAGAAGTTTGAAAGCGTAAGTTTTCTTGTGGTCAAACTGGTACATTTCCTGATCTTCTAGCAGCTAAGATGAAAGAGCATGGGTGCAAAGTTCTCAACTCCCAAACTCCCATGTTAGTCCATCTTTTGTGGAAGTTGTAACAATCTTTTCATTATATTTTCAGGATAATAATCTTGGATTAGTGATGCAAGTAGTGTCTTCTATGTATAAGCGCAATATTCAGCGGTTAACTCAAACGTACCTAACTCTCTCCCTCCAAGATATTGCTAACACTGTCCAGCTAAGAGACCCCAAACAGGCAGAAATGCATGTGCTTCAGATGGTATCCTGCTTTTTGATCTTGGATTGTGTAAGCCTTCAACTTTGAAACTTGAAATGCTGATGTTTCACTTTTGGTTATAGATTGAAGATGGTGAGATATATGCAACAATCAATCAGAAGGATGGTATGGTTAGATTTCTGGAGGATCCTGAGCAGTATAAAACGTGTGGAATGATTGAACATATCGATTCATCAATTAAGAGGTAAGACTTCTGTTACTTCGGTCATTGGATATGGATATTCTACATTTTACTTGTAATTAGACGGTAATTTTTCTGTCCAATGTGGTGGCTATAGGCTATAGCTACTGATTGGCTTTTTAAGAATTTAAATGTTATCTCAAACTCCAAATAAAGTTGGAATGAATTTGAACTTATGCACATGGTACTAATGATGGATGTCATGATATGCGCAAAAGAATGCCAATTTCCATCCAGCAATTTGGATATCTGCACCAATTGTACCTACATAAGGGAGATGTTTCTAAAATACTAGCGAGTGAGGGAGGGTGAAATTAAAATTTAGTAATGTTGTACATAAATAGGTTGGAAATTTTACTTTGCATCGCTTGGGGGTTATTTGGTTGGAAACTAGTTATCCCAGGATATCCTGGGAGGGATATAACTTATCCTACCATGTATATAGGATAACTTATCCCATCACTATGCTATAAATGGTGGTAAAAGTTATTTCAAACAACACATTTAAATTTTATCCTTGGACTAATTTTTTATCCCAGGACTATTTATGCTTATCCCTCACACCAAACGAGCCCTTATTGATAGTAGGGTAAGGCTAAAGGGTAGGGTTCTCCATTAGATTTACTTTAATCTTTTCATCTCTATCTCTCTGTGTACATATGTTCTAAAGAATTTTACAATATGTGAATGAAACTTATGTCATGTGATCCTATGTACATATGTTCTAAAAACTACAATGATGTATGTTTTTCTATTGCAGATTGATGGCAGTGTCGAAAAAGTTGACGTCTATGGATGAACTTATGTCATGTGATCCTATGTACCTAGGAAAGGTAAAACTATGTCAAAGTCCTCTTTCGCTAACTGCTTAATATAACAACTGTATTTTTCACTAATTTAATGTGTTTACTTGCTATGCAGGTTGGTAGGGAGAGACAGAGATTTGATTTTGATGATTTTGACGGTGTTCCTCAGAAATTCACTATCTGAGACTAGCAAAGTTCAGTTTTCTGAGTAAATATGGCAAATGATGCTGATATGTTCATTTG</genome_strand>
        <mrna_strand>GAACTTGAAGAATTTCTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCTACCTGGAGTTATCAAACAGTTATGGGACTGGAAGAATCTCTGAACTTGAAACATTTGTTCAAACAAACAAGGAGAAGTTTGAAAGC....................................................................................................................................................GATAATAATCTTGGATTAGTGATGCAAGTAGTGTCTTCTATGTATAAGCGCAATATTCAGCGGTTAACTCAAACGTACCTAACTCTCTCCCTCCAAGATATTGCTAACACTGTCCAGCTAAGAGACCCCAAACAGGCAGAAATGCATGTGCTTCAGATG................................................................................ATTGAAGATGGTGAGATATATGCAACAATCAATCAGAAGGATGGTATGGTTAGATTTCTGGAGGATCCTGAGCAGTATAAAACGTGTGGAATGATTGAACATATCGATTCATCAATTAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGATGGCAGTGTCGAAAAAGTTGACGTCTATGGATGAACTTATGTCATGTGATCCTATGTACCTAGGAAAG........................................................................................GTTGGTAGGGAGAGACAGAGATTTGATTTTGATGATTTTGACGGTGTTCCTCAGAAATTCACTATCTGAGACTAGCAAAGTTCAGTTTTCTGAGTAAATATGGCAAATGATGCTGATATGTTCATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E304487" ref_strand="+" ref_description="SGN-E304487 [cLEX-12-N16]">
      <seq>aagtagtgtcttctatgtataagcgcaatattcagcggttaactcaaacgtacctaactctctccctccaagatattgctaacactgtccagctaagagaccccaaacaggcagaaatgcatgtgcttcagatgattgaagatggtgagatatatgcaacaatcaatcagaaggatggtatggttagatttctggaggatcctgagcagtataaaacgtgtggaatgattgaacatatcgattcatcaattaagagattgatggcagtgtcgaaaaagttgacgtctatggatgaacttatgtcatgtgatcctatgtacctangaaaggttggtagggagagacagagatttgattttgatgattttgacggtgttcctcagaaatgcactatctgagactagcaaagttcagttttctgagtaaatatggcaaatgatgctgatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="32679" stop="30706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32379" g_stop="32246" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32245" i_stop="32166" i_length="80">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32165" g_stop="32044" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="256" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32043" i_stop="31287" i_length="757">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31286" g_stop="31214" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="329" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31213" i_stop="31126" i_length="88">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31125" g_stop="31006" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="449" r_length="120" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E304487" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304487" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32379" e_stop="32246"/>
          <exon e_start="32165" e_stop="32044"/>
          <exon e_start="31286" e_stop="31214"/>
          <exon e_start="31125" e_stop="31006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTAGTGTCTTCTATGTATAAGCGCAATATTCAGCGGTTAACTCAAACGTACCTAACTCTCTCCCTCCAAGATATTGCTAACACTGTCCAGCTAAGAGACCCCAAACAGGCAGAAATGCATGTGCTTCAGATGGTATCCTGCTTTTTGATCTTGGATTGTGTAAGCCTTCAACTTTGAAACTTGAAATGCTGATGTTTCACTTTTGGTTATAGATTGAAGATGGTGAGATATATGCAACAATCAATCAGAAGGATGGTATGGTTAGATTTCTGGAGGATCCTGAGCAGTATAAAACGTGTGGAATGATTGAACATATCGATTCATCAATTAAGAGGTAAGACTTCTGTTACTTCGGTCATTGGATATGGATATTCTACATTTTACTTGTAATTAGACGGTAATTTTTCTGTCCAATGTGGTGGCTATAGGCTATAGCTACTGATTGGCTTTTTAAGAATTTAAATGTTATCTCAAACTCCAAATAAAGTTGGAATGAATTTGAACTTATGCACATGGTACTAATGATGGATGTCATGATATGCGCAAAAGAATGCCAATTTCCATCCAGCAATTTGGATATCTGCACCAATTGTACCTACATAAGGGAGATGTTTCTAAAATACTAGCGAGTGAGGGAGGGTGAAATTAAAATTTAGTAATGTTGTACATAAATAGGTTGGAAATTTTACTTTGCATCGCTTGGGGGTTATTTGGTTGGAAACTAGTTATCCCAGGATATCCTGGGAGGGATATAACTTATCCTACCATGTATATAGGATAACTTATCCCATCACTATGCTATAAATGGTGGTAAAAGTTATTTCAAACAACACATTTAAATTTTATCCTTGGACTAATTTTTTATCCCAGGACTATTTATGCTTATCCCTCACACCAAACGAGCCCTTATTGATAGTAGGGTAAGGCTAAAGGGTAGGGTTCTCCATTAGATTTACTTTAATCTTTTCATCTCTATCTCTCTGTGTACATATGTTCTAAAGAATTTTACAATATGTGAATGAAACTTATGTCATGTGATCCTATGTACATATGTTCTAAAAACTACAATGATGTATGTTTTTCTATTGCAGATTGATGGCAGTGTCGAAAAAGTTGACGTCTATGGATGAACTTATGTCATGTGATCCTATGTACCTAGGAAAGGTAAAACTATGTCAAAGTCCTCTTTCGCTAACTGCTTAATATAACAACTGTATTTTTCACTAATTTAATGTGTTTACTTGCTATGCAGGTTGGTAGGGAGAGACAGAGATTTGATTTTGATGATTTTGACGGTGTTCCTCAGAAATTCACTATCTGAGACTAGCAAAGTTCAGTTTTCTGAGTAAATATGGCAAATGATGCTGATATG</genome_strand>
        <mrna_strand>AAGTAGTGTCTTCTATGTATAAGCGCAATATTCAGCGGTTAACTCAAACGTACCTAACTCTCTCCCTCCAAGATATTGCTAACACTGTCCAGCTAAGAGACCCCAAACAGGCAGAAATGCATGTGCTTCAGATG................................................................................ATTGAAGATGGTGAGATATATGCAACAATCAATCAGAAGGATGGTATGGTTAGATTTCTGGAGGATCCTGAGCAGTATAAAACGTGTGGAATGATTGAACATATCGATTCATCAATTAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGATGGCAGTGTCGAAAAAGTTGACGTCTATGGATGAACTTATGTCATGTGATCCTATGTACCTANGAAAG........................................................................................GTTGGTAGGGAGAGACAGAGATTTGATTTTGATGATTTTGACGGTGTTCCTCAGAAATGCACTATCTGAGACTAGCAAAGTTCAGTTTTCTGAGTAAATATGGCAAATGATGCTGATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E231968" ref_strand="+" ref_description="SGN-E231968 [cLED-7-I11]">
      <seq>cctggagttatcaaacagttatgggactggaagaatctctgaacttgaaacatttgttcaaacaaacaaggagaagtttgaaagcgataataatcttggattagtgatgcaagtagtgtcttctatgtataagcgcaatattcagcggttaactcaaacgtacctaactctctccctccaagatattgctaacactgtccagctaagagaccccaaacaggcagaaatgcatgtgcttcagatgattgaagatggtgagatatatgcaacaatcaatcataaggatggtatggttagatttctggaggatcctgagcagtataaaacgtgtggaatgattgaacatatcgattcatcaattaagagattgatggcagtgtcgaaaaagttgacgtctatggatgaacttatgtcatgtgatcctatgtacctaggaaaggttggtagggagagacagagatttgattttgatgattttgacggtgttcctcagaaattcactatctgagactagcaaagttcagttttctgagtaaatatggcaaatgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="32937" stop="30713"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32637" g_stop="32553" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32552" i_stop="32405" i_length="148">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32404" g_stop="32246" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="244" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32245" i_stop="32166" i_length="80">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32165" g_stop="32044" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="366" r_length="122" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32043" i_stop="31287" i_length="757">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31286" g_stop="31214" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="439" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31213" i_stop="31126" i_length="88">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31125" g_stop="31013" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="552" r_length="113" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E231968" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231968" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32637" e_stop="32553"/>
          <exon e_start="32404" e_stop="32246"/>
          <exon e_start="32165" e_stop="32044"/>
          <exon e_start="31286" e_stop="31214"/>
          <exon e_start="31125" e_stop="31013"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGGAGTTATCAAACAGTTATGGGACTGGAAGAATCTCTGAACTTGAAACATTTGTTCAAACAAACAAGGAGAAGTTTGAAAGCGTAAGTTTTCTTGTGGTCAAACTGGTACATTTCCTGATCTTCTAGCAGCTAAGATGAAAGAGCATGGGTGCAAAGTTCTCAACTCCCAAACTCCCATGTTAGTCCATCTTTTGTGGAAGTTGTAACAATCTTTTCATTATATTTTCAGGATAATAATCTTGGATTAGTGATGCAAGTAGTGTCTTCTATGTATAAGCGCAATATTCAGCGGTTAACTCAAACGTACCTAACTCTCTCCCTCCAAGATATTGCTAACACTGTCCAGCTAAGAGACCCCAAACAGGCAGAAATGCATGTGCTTCAGATGGTATCCTGCTTTTTGATCTTGGATTGTGTAAGCCTTCAACTTTGAAACTTGAAATGCTGATGTTTCACTTTTGGTTATAGATTGAAGATGGTGAGATATATGCAACAATCAATCAGAAGGATGGTATGGTTAGATTTCTGGAGGATCCTGAGCAGTATAAAACGTGTGGAATGATTGAACATATCGATTCATCAATTAAGAGGTAAGACTTCTGTTACTTCGGTCATTGGATATGGATATTCTACATTTTACTTGTAATTAGACGGTAATTTTTCTGTCCAATGTGGTGGCTATAGGCTATAGCTACTGATTGGCTTTTTAAGAATTTAAATGTTATCTCAAACTCCAAATAAAGTTGGAATGAATTTGAACTTATGCACATGGTACTAATGATGGATGTCATGATATGCGCAAAAGAATGCCAATTTCCATCCAGCAATTTGGATATCTGCACCAATTGTACCTACATAAGGGAGATGTTTCTAAAATACTAGCGAGTGAGGGAGGGTGAAATTAAAATTTAGTAATGTTGTACATAAATAGGTTGGAAATTTTACTTTGCATCGCTTGGGGGTTATTTGGTTGGAAACTAGTTATCCCAGGATATCCTGGGAGGGATATAACTTATCCTACCATGTATATAGGATAACTTATCCCATCACTATGCTATAAATGGTGGTAAAAGTTATTTCAAACAACACATTTAAATTTTATCCTTGGACTAATTTTTTATCCCAGGACTATTTATGCTTATCCCTCACACCAAACGAGCCCTTATTGATAGTAGGGTAAGGCTAAAGGGTAGGGTTCTCCATTAGATTTACTTTAATCTTTTCATCTCTATCTCTCTGTGTACATATGTTCTAAAGAATTTTACAATATGTGAATGAAACTTATGTCATGTGATCCTATGTACATATGTTCTAAAAACTACAATGATGTATGTTTTTCTATTGCAGATTGATGGCAGTGTCGAAAAAGTTGACGTCTATGGATGAACTTATGTCATGTGATCCTATGTACCTAGGAAAGGTAAAACTATGTCAAAGTCCTCTTTCGCTAACTGCTTAATATAACAACTGTATTTTTCACTAATTTAATGTGTTTACTTGCTATGCAGGTTGGTAGGGAGAGACAGAGATTTGATTTTGATGATTTTGACGGTGTTCCTCAGAAATTCACTATCTGAGACTAGCAAAGTTCAGTTTTCTGAGTAAATATGGCAAATGATGC</genome_strand>
        <mrna_strand>CCTGGAGTTATCAAACAGTTATGGGACTGGAAGAATCTCTGAACTTGAAACATTTGTTCAAACAAACAAGGAGAAGTTTGAAAGC....................................................................................................................................................GATAATAATCTTGGATTAGTGATGCAAGTAGTGTCTTCTATGTATAAGCGCAATATTCAGCGGTTAACTCAAACGTACCTAACTCTCTCCCTCCAAGATATTGCTAACACTGTCCAGCTAAGAGACCCCAAACAGGCAGAAATGCATGTGCTTCAGATG................................................................................ATTGAAGATGGTGAGATATATGCAACAATCAATCATAAGGATGGTATGGTTAGATTTCTGGAGGATCCTGAGCAGTATAAAACGTGTGGAATGATTGAACATATCGATTCATCAATTAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGATGGCAGTGTCGAAAAAGTTGACGTCTATGGATGAACTTATGTCATGTGATCCTATGTACCTAGGAAAG........................................................................................GTTGGTAGGGAGAGACAGAGATTTGATTTTGATGATTTTGACGGTGTTCCTCAGAAATTCACTATCTGAGACTAGCAAAGTTCAGTTTTCTGAGTAAATATGGCAAATGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E238381" ref_strand="+" ref_description="SGN-E238381 [cLED-17-B9]">
      <seq>ttccgtggctcaaaggaacttgaataatttctctcagccctacctggagttatcaaacagttatgggactggaagaatctctgaactcgaaacatttgttcaaacctacaacgagaagtttgaaagcgataataatcttggattagtgatgcaagtagtgtcttctatgtataagcgcaatattcagcggttaactcaaacgtacctaactctctccctccaagatcttgctaacactgtccagctaagagaccgcaaacaggcagaaatgcatgtgcttcatatgattgaagatggtgagatatatgcaacaatcaatcagaaggatggtgtggatagatttctggaggatcctgagcagtataaaacgtgtggaatgattgaacatatcgattcatcaattgagagattgatggcagtgtctaaaacgttgacggctatggatgaacttatgtcatgtgatcctatgtacctaggataggttggtgtggagaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="33511" stop="30912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33211" g_stop="33175" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33174" i_stop="32643" i_length="532">
            <donor d_prob="0.976" d_score="0.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32642" g_stop="32553" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="127" r_length="90" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32552" i_stop="32405" i_length="148">
            <donor d_prob="0.831" d_score="0.92"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32404" g_stop="32246" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="286" r_length="159" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32245" i_stop="32166" i_length="80">
            <donor d_prob="0.900" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32165" g_stop="32044" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="408" r_length="122" r_score="0.975"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32043" i_stop="31287" i_length="757">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31286" g_stop="31214" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="481" r_length="73" r_score="0.945"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="31213" i_stop="31126" i_length="88">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="31125" g_stop="31111" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="496" r_length="15" r_score="0.867"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E238381" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238381" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33211" e_stop="33175"/>
          <exon e_start="32642" e_stop="32553"/>
          <exon e_start="32404" e_stop="32246"/>
          <exon e_start="32165" e_stop="32044"/>
          <exon e_start="31286" e_stop="31214"/>
          <exon e_start="31125" e_stop="31111"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCGTGGCTCAAAGGAACTTGAAGAATTTCTCTCAGGTAATTATTTCAACTGTGCAAACATTGATTCCAAGTAGCACCGACTGTTCCACCCAAAGCAAATTGAAAGGAATATTTTCCCTCAAATGATTTGATGACAATGCAAGCTCAGTTAAGTATGCACAGTTGGCGTTACAATGTTGATGTTAGAAATCTTGTACTGATTCAAGTGTTGTTTCAAAGTATAAGCATTGCATATTTTGTATTAGCACTTAGCAGGCTAGGCATGAAACTACATAAATGATAATGAAACAAGAAATATATCAGTATCTAATAGAAGTGAAAGAAAGAACGCATTTTCGTGTATCGGAAAAGTCACTGTTTAGAGTCCTCAAAATCTGTTTAGTGTACTCAGCGAAGAAATAAGGTGACCAGCTGGAAGCTTCTGAAATCCCAACAATATTTTCTAATATAAAATGAATCCAATTTGGGAGGAGACTGAAGAGACGCCTCATCAAGGATAATTCTCTGTCATGTGTGGTCCTTATGTGTGGAATATAACATAAACTACTTATTATTTCTTTTTGAGCAGCCCTACCTGGAGTTATCAAACAGTTATGGGACTGGAAGAATCTCTGAACTTGAAACATTTGTTCAAACAAACAAGGAGAAGTTTGAAAGCGTAAGTTTTCTTGTGGTCAAACTGGTACATTTCCTGATCTTCTAGCAGCTAAGATGAAAGAGCATGGGTGCAAAGTTCTCAACTCCCAAACTCCCATGTTAGTCCATCTTTTGTGGAAGTTGTAACAATCTTTTCATTATATTTTCAGGATAATAATCTTGGATTAGTGATGCAAGTAGTGTCTTCTATGTATAAGCGCAATATTCAGCGGTTAACTCAAACGTACCTAACTCTCTCCCTCCAAGATATTGCTAACACTGTCCAGCTAAGAGACCCCAAACAGGCAGAAATGCATGTGCTTCAGATGGTATCCTGCTTTTTGATCTTGGATTGTGTAAGCCTTCAACTTTGAAACTTGAAATGCTGATGTTTCACTTTTGGTTATAGATTGAAGATGGTGAGATATATGCAACAATCAATCAGAAGGATGGTATGGTTAGATTTCTGGAGGATCCTGAGCAGTATAAAACGTGTGGAATGATTGAACATATCGATTCATCAATTAAGAGGTAAGACTTCTGTTACTTCGGTCATTGGATATGGATATTCTACATTTTACTTGTAATTAGACGGTAATTTTTCTGTCCAATGTGGTGGCTATAGGCTATAGCTACTGATTGGCTTTTTAAGAATTTAAATGTTATCTCAAACTCCAAATAAAGTTGGAATGAATTTGAACTTATGCACATGGTACTAATGATGGATGTCATGATATGCGCAAAAGAATGCCAATTTCCATCCAGCAATTTGGATATCTGCACCAATTGTACCTACATAAGGGAGATGTTTCTAAAATACTAGCGAGTGAGGGAGGGTGAAATTAAAATTTAGTAATGTTGTACATAAATAGGTTGGAAATTTTACTTTGCATCGCTTGGGGGTTATTTGGTTGGAAACTAGTTATCCCAGGATATCCTGGGAGGGATATAACTTATCCTACCATGTATATAGGATAACTTATCCCATCACTATGCTATAAATGGTGGTAAAAGTTATTTCAAACAACACATTTAAATTTTATCCTTGGACTAATTTTTTATCCCAGGACTATTTATGCTTATCCCTCACACCAAACGAGCCCTTATTGATAGTAGGGTAAGGCTAAAGGGTAGGGTTCTCCATTAGATTTACTTTAATCTTTTCATCTCTATCTCTCTGTGTACATATGTTCTAAAGAATTTTACAATATGTGAATGAAACTTATGTCATGTGATCCTATGTACATATGTTCTAAAAACTACAATGATGTATGTTTTTCTATTGCAGATTGATGGCAGTGTCGAAAAAGTTGACGTCTATGGATGAACTTATGTCATGTGATCCTATGTACCTAGGAAAGGTAAAACTATGTCAAAGTCCTCTTTCGCTAACTGCTTAATATAACAACTGTATTTTTCACTAATTTAATGTGTTTACTTGCTATGCAGGTTGGTAGGGAGAGA</genome_strand>
        <mrna_strand>TTCCGTGGCTCAAAGGAACTTGAATAATTTCTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCTACCTGGAGTTATCAAACAGTTATGGGACTGGAAGAATCTCTGAACTCGAAACATTTGTTCAAACCTACAACGAGAAGTTTGAAAGC....................................................................................................................................................GATAATAATCTTGGATTAGTGATGCAAGTAGTGTCTTCTATGTATAAGCGCAATATTCAGCGGTTAACTCAAACGTACCTAACTCTCTCCCTCCAAGATCTTGCTAACACTGTCCAGCTAAGAGACCGCAAACAGGCAGAAATGCATGTGCTTCATATG................................................................................ATTGAAGATGGTGAGATATATGCAACAATCAATCAGAAGGATGGTGTGGATAGATTTCTGGAGGATCCTGAGCAGTATAAAACGTGTGGAATGATTGAACATATCGATTCATCAATTGAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGATGGCAGTGTCTAAAACGTTGACGGCTATGGATGAACTTATGTCATGTGATCCTATGTACCTAGGATAG........................................................................................GTTGGTGTGGAGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E233784" ref_strand="+" ref_description="SGN-E233784 [cLED-14-B15]">
      <seq>ttccgtggctcaaaggaacttgaagaaatttctctcagccctacctggagttatcaaacagttatgggactggaagaatctctgaacttgaaacatttgttcaaacaaacaaggagaagtttgaaagcgataataatcttggattagtgatgcaagtagtgtcttctatgtataagcgcaatattcagcggttaactcaaacgtacctaactctctccctccaagatattgctaacactgtccagctaagagaccccaaacaggcagaaatgcatgtgcttcagatgattgaagatggtgagatatatgcaacaatcaatcagaaggatggtatggttagatttctggaggatcctgagcagtataaaacgtgtggaatgattgaacatatcgattcatcaattaagagattgatggcagtgtcgaaaaagttgacgtctatggatgaacttatgtcatgtgatcctatgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="33511" stop="30924"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33211" g_stop="33175" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33174" i_stop="32643" i_length="532">
            <donor d_prob="0.976" d_score="0.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32642" g_stop="32553" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="128" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32552" i_stop="32405" i_length="148">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32404" g_stop="32246" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="287" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32245" i_stop="32166" i_length="80">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32165" g_stop="32044" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="409" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32043" i_stop="31287" i_length="757">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31286" g_stop="31224" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="472" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E233784" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233784" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33211" e_stop="33175"/>
          <exon e_start="32642" e_stop="32553"/>
          <exon e_start="32404" e_stop="32246"/>
          <exon e_start="32165" e_stop="32044"/>
          <exon e_start="31286" e_stop="31224"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCGTGGCTCAAAGGAACTTGAAG-AATTTCTCTCAGGTAATTATTTCAACTGTGCAAACATTGATTCCAAGTAGCACCGACTGTTCCACCCAAAGCAAATTGAAAGGAATATTTTCCCTCAAATGATTTGATGACAATGCAAGCTCAGTTAAGTATGCACAGTTGGCGTTACAATGTTGATGTTAGAAATCTTGTACTGATTCAAGTGTTGTTTCAAAGTATAAGCATTGCATATTTTGTATTAGCACTTAGCAGGCTAGGCATGAAACTACATAAATGATAATGAAACAAGAAATATATCAGTATCTAATAGAAGTGAAAGAAAGAACGCATTTTCGTGTATCGGAAAAGTCACTGTTTAGAGTCCTCAAAATCTGTTTAGTGTACTCAGCGAAGAAATAAGGTGACCAGCTGGAAGCTTCTGAAATCCCAACAATATTTTCTAATATAAAATGAATCCAATTTGGGAGGAGACTGAAGAGACGCCTCATCAAGGATAATTCTCTGTCATGTGTGGTCCTTATGTGTGGAATATAACATAAACTACTTATTATTTCTTTTTGAGCAGCCCTACCTGGAGTTATCAAACAGTTATGGGACTGGAAGAATCTCTGAACTTGAAACATTTGTTCAAACAAACAAGGAGAAGTTTGAAAGCGTAAGTTTTCTTGTGGTCAAACTGGTACATTTCCTGATCTTCTAGCAGCTAAGATGAAAGAGCATGGGTGCAAAGTTCTCAACTCCCAAACTCCCATGTTAGTCCATCTTTTGTGGAAGTTGTAACAATCTTTTCATTATATTTTCAGGATAATAATCTTGGATTAGTGATGCAAGTAGTGTCTTCTATGTATAAGCGCAATATTCAGCGGTTAACTCAAACGTACCTAACTCTCTCCCTCCAAGATATTGCTAACACTGTCCAGCTAAGAGACCCCAAACAGGCAGAAATGCATGTGCTTCAGATGGTATCCTGCTTTTTGATCTTGGATTGTGTAAGCCTTCAACTTTGAAACTTGAAATGCTGATGTTTCACTTTTGGTTATAGATTGAAGATGGTGAGATATATGCAACAATCAATCAGAAGGATGGTATGGTTAGATTTCTGGAGGATCCTGAGCAGTATAAAACGTGTGGAATGATTGAACATATCGATTCATCAATTAAGAGGTAAGACTTCTGTTACTTCGGTCATTGGATATGGATATTCTACATTTTACTTGTAATTAGACGGTAATTTTTCTGTCCAATGTGGTGGCTATAGGCTATAGCTACTGATTGGCTTTTTAAGAATTTAAATGTTATCTCAAACTCCAAATAAAGTTGGAATGAATTTGAACTTATGCACATGGTACTAATGATGGATGTCATGATATGCGCAAAAGAATGCCAATTTCCATCCAGCAATTTGGATATCTGCACCAATTGTACCTACATAAGGGAGATGTTTCTAAAATACTAGCGAGTGAGGGAGGGTGAAATTAAAATTTAGTAATGTTGTACATAAATAGGTTGGAAATTTTACTTTGCATCGCTTGGGGGTTATTTGGTTGGAAACTAGTTATCCCAGGATATCCTGGGAGGGATATAACTTATCCTACCATGTATATAGGATAACTTATCCCATCACTATGCTATAAATGGTGGTAAAAGTTATTTCAAACAACACATTTAAATTTTATCCTTGGACTAATTTTTTATCCCAGGACTATTTATGCTTATCCCTCACACCAAACGAGCCCTTATTGATAGTAGGGTAAGGCTAAAGGGTAGGGTTCTCCATTAGATTTACTTTAATCTTTTCATCTCTATCTCTCTGTGTACATATGTTCTAAAGAATTTTACAATATGTGAATGAAACTTATGTCATGTGATCCTATGTACATATGTTCTAAAAACTACAATGATGTATGTTTTTCTATTGCAGATTGATGGCAGTGTCGAAAAAGTTGACGTCTATGGATGAACTTATGTCATGTGATCCTATGTA</genome_strand>
        <mrna_strand>TTCCGTGGCTCAAAGGAACTTGAAGAAATTTCTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCTACCTGGAGTTATCAAACAGTTATGGGACTGGAAGAATCTCTGAACTTGAAACATTTGTTCAAACAAACAAGGAGAAGTTTGAAAGC....................................................................................................................................................GATAATAATCTTGGATTAGTGATGCAAGTAGTGTCTTCTATGTATAAGCGCAATATTCAGCGGTTAACTCAAACGTACCTAACTCTCTCCCTCCAAGATATTGCTAACACTGTCCAGCTAAGAGACCCCAAACAGGCAGAAATGCATGTGCTTCAGATG................................................................................ATTGAAGATGGTGAGATATATGCAACAATCAATCAGAAGGATGGTATGGTTAGATTTCTGGAGGATCCTGAGCAGTATAAAACGTGTGGAATGATTGAACATATCGATTCATCAATTAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGATGGCAGTGTCGAAAAAGTTGACGTCTATGGATGAACTTATGTCATGTGATCCTATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E274507" ref_strand="+" ref_description="SGN-E274507 [cLEN-11-H3]">
      <seq>atgacatatatgagattgatcagccacgggagttttttctctattgttactacgggggaatggtttgcattggacaaaagcagttccgcaaagcattggaactcttgcacaatgttgtgactgcacctatgtctactctaaatgcaatagcagttgaagcttacaaaaagtacattctggtttcactgattcatcttgggcagttctctaccagttttcccaagtacacttcttccgtggctcaaaggaacttgaagaatttctctcagccctacctggagttatcaaacagttatgggactggaagaatctctgaacttgaaacatttgttcaaacaaacaaggagaagtttgaaagcgataataatcttggattagtgatgcaagtagtgtcttctatgtataagcgcaatattcagcggttaactcaaacgtacctaactctctccctccaagatattgctaacactgtccagctaagagaccccaaacaggcagaaatgcatgtgcttcagatgattgaagatggtgagatatatgcaacaatcaatcagaaggatggtatggttagatttctggaggatcctgagcagtataaaacgtgtggaatgattgaacatatcgattcatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="34770" stop="31751"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34470" g_stop="34416" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34415" i_stop="33907" i_length="509">
            <donor d_prob="0.771" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33906" g_stop="33849" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="113" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33848" i_stop="33722" i_length="127">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33721" g_stop="33632" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="203" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33631" i_stop="33241" i_length="391">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.683" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33240" g_stop="33175" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="269" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33174" i_stop="32643" i_length="532">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32642" g_stop="32553" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="359" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="32552" i_stop="32405" i_length="148">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32404" g_stop="32246" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="518" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="32245" i_stop="32166" i_length="80">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="32165" g_stop="32051" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="633" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E274507" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274507" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34470" e_stop="34416"/>
          <exon e_start="33906" e_stop="33849"/>
          <exon e_start="33721" e_stop="33632"/>
          <exon e_start="33240" e_stop="33175"/>
          <exon e_start="32642" e_stop="32553"/>
          <exon e_start="32404" e_stop="32246"/>
          <exon e_start="32165" e_stop="32051"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGACATATATGAGATTGATCAGCCACGGGAGTTTTTTCTCTATTGTTACTACGGGTTAGTTGTTTCAGACTTTCTGCTTAGAAGTTATTTCAGTTGTGTTGGTGTCGTTCCCTTGTTCCGTTCCTTGTTTAAATTTCTCTGTGACTTTTAAAAAAAAAAATTGGAATATTTTTTATGGCAATTCATTAAATCATGCTTTCCTATCAGTGTGTTTTCTAATTTTTATAGGAAAGAGGAACTTTACTCGCCTATGAATATTTGTATTTGCTTGTATAGTTATCTGGTGAAAGAATTAATTTTGTTCAAAAACCCATGGTATTGGTATACAATTATCTACGTCTGCCTTTCTTACCTTTGATATTGTTTAGTTCTCCAACCTAAAGACAAAGTTCTTAACAGCAATGTGAATCACAAGTGATGTATCAATTTAGAATGAGATTGAGTAATTCAATATTTTCTTAATTAAAAAAGTCACTGATATAATCTTTCTATCGCTTTCTGGATTTTTCTGGATTTGTGTCTTATACTTGTTGACATGTCTTATAATTTGAACATAATAACAGGGGAATGGTTTGCATTGGACAAAAGCAGTTCCGCAAAGCATTGGAACTCTTGCACAATGTATGTTACTGTGTTCTCATTCCATGTTTCCTTTATTGGTATTTGGTTTTGTTATTCCCTATTTGCAAGTTACTATATATTATCTATATCTGTCCGTTTGTGCTGATTCTATCTGTTATGCTTCTAGGTTGTGACTGCACCTATGTCTACTCTAAATGCAATAGCAGTTGAAGCTTACAAAAAGTACATTCTGGTTTCACTGATTCATCTTGGGCAGGTGTGTTTTGCCACCATTTTTTACATACTTTTGGTGATAATATTTAGTCAATATTCTTGTGACGTCTCTGTTGGACAACAGTTTGTGAGATCTATGTGTCTTTTCTGGGGCTTGAGCTTGCACTGCCGTATAACCTTCTTATTTTACATTATGTATGATATTATCACCGATGGACTCGTTTAGTTTGAGCCACAATGTGTCAACTTTTTAAAATGATTTTGGCTTGTAATATGCACTTTGAGTAGAGATGTAAGCACCCCCCTCCCCCCCTCACCCAAAACAACAACAAATATGCACAAAGTAAAAAAGAATATGATAGGTCATGTTTCCGATGTTTATTCTTGCTGATTTTCGTTCTCCTGATTAAATTGAGGTTTGCTTATCATGGCAGTTCTCTACCAGTTTTCCCAAGTACACTTCTTCCGTGGCTCAAAGGAACTTGAAGAATTTCTCTCAGGTAATTATTTCAACTGTGCAAACATTGATTCCAAGTAGCACCGACTGTTCCACCCAAAGCAAATTGAAAGGAATATTTTCCCTCAAATGATTTGATGACAATGCAAGCTCAGTTAAGTATGCACAGTTGGCGTTACAATGTTGATGTTAGAAATCTTGTACTGATTCAAGTGTTGTTTCAAAGTATAAGCATTGCATATTTTGTATTAGCACTTAGCAGGCTAGGCATGAAACTACATAAATGATAATGAAACAAGAAATATATCAGTATCTAATAGAAGTGAAAGAAAGAACGCATTTTCGTGTATCGGAAAAGTCACTGTTTAGAGTCCTCAAAATCTGTTTAGTGTACTCAGCGAAGAAATAAGGTGACCAGCTGGAAGCTTCTGAAATCCCAACAATATTTTCTAATATAAAATGAATCCAATTTGGGAGGAGACTGAAGAGACGCCTCATCAAGGATAATTCTCTGTCATGTGTGGTCCTTATGTGTGGAATATAACATAAACTACTTATTATTTCTTTTTGAGCAGCCCTACCTGGAGTTATCAAACAGTTATGGGACTGGAAGAATCTCTGAACTTGAAACATTTGTTCAAACAAACAAGGAGAAGTTTGAAAGCGTAAGTTTTCTTGTGGTCAAACTGGTACATTTCCTGATCTTCTAGCAGCTAAGATGAAAGAGCATGGGTGCAAAGTTCTCAACTCCCAAACTCCCATGTTAGTCCATCTTTTGTGGAAGTTGTAACAATCTTTTCATTATATTTTCAGGATAATAATCTTGGATTAGTGATGCAAGTAGTGTCTTCTATGTATAAGCGCAATATTCAGCGGTTAACTCAAACGTACCTAACTCTCTCCCTCCAAGATATTGCTAACACTGTCCAGCTAAGAGACCCCAAACAGGCAGAAATGCATGTGCTTCAGATGGTATCCTGCTTTTTGATCTTGGATTGTGTAAGCCTTCAACTTTGAAACTTGAAATGCTGATGTTTCACTTTTGGTTATAGATTGAAGATGGTGAGATATATGCAACAATCAATCAGAAGGATGGTATGGTTAGATTTCTGGAGGATCCTGAGCAGTATAAAACGTGTGGAATGATTGAACATATCGATTCATCAA</genome_strand>
        <mrna_strand>ATGACATATATGAGATTGATCAGCCACGGGAGTTTTTTCTCTATTGTTACTACGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAATGGTTTGCATTGGACAAAAGCAGTTCCGCAAAGCATTGGAACTCTTGCACAAT...............................................................................................................................GTTGTGACTGCACCTATGTCTACTCTAAATGCAATAGCAGTTGAAGCTTACAAAAAGTACATTCTGGTTTCACTGATTCATCTTGGGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................TTCTCTACCAGTTTTCCCAAGTACACTTCTTCCGTGGCTCAAAGGAACTTGAAGAATTTCTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCTACCTGGAGTTATCAAACAGTTATGGGACTGGAAGAATCTCTGAACTTGAAACATTTGTTCAAACAAACAAGGAGAAGTTTGAAAGC....................................................................................................................................................GATAATAATCTTGGATTAGTGATGCAAGTAGTGTCTTCTATGTATAAGCGCAATATTCAGCGGTTAACTCAAACGTACCTAACTCTCTCCCTCCAAGATATTGCTAACACTGTCCAGCTAAGAGACCCCAAACAGGCAGAAATGCATGTGCTTCAGATG................................................................................ATTGAAGATGGTGAGATATATGCAACAATCAATCAGAAGGATGGTATGGTTAGATTTCTGGAGGATCCTGAGCAGTATAAAACGTGTGGAATGATTGAACATATCGATTCATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E239960" ref_strand="+" ref_description="SGN-E239960 [cLED-29-H3]">
      <seq>cctggagttatcaaacagttatgggactggaagaatctctgaacttgaaacatttgttcaaacaaacaaggagaagtttgaaagcgataataatcttggattagtgatgcaagtagtgtcttctatgtataagcgcaatattcagcggttaactcaaacgtacctaactctctccctccaagatattgctaacactgtccagctaagagaccccaaacaggcagaaatgcatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="32937" stop="31956"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32637" g_stop="32553" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32552" i_stop="32405" i_length="148">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32404" g_stop="32256" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="234" r_length="149" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E239960" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>234</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32637" e_stop="32553"/>
          <exon e_start="32404" e_stop="32256"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGGAGTTATCAAACAGTTATGGGACTGGAAGAATCTCTGAACTTGAAACATTTGTTCAAACAAACAAGGAGAAGTTTGAAAGCGTAAGTTTTCTTGTGGTCAAACTGGTACATTTCCTGATCTTCTAGCAGCTAAGATGAAAGAGCATGGGTGCAAAGTTCTCAACTCCCAAACTCCCATGTTAGTCCATCTTTTGTGGAAGTTGTAACAATCTTTTCATTATATTTTCAGGATAATAATCTTGGATTAGTGATGCAAGTAGTGTCTTCTATGTATAAGCGCAATATTCAGCGGTTAACTCAAACGTACCTAACTCTCTCCCTCCAAGATATTGCTAACACTGTCCAGCTAAGAGACCCCAAACAGGCAGAAATGCATGT</genome_strand>
        <mrna_strand>CCTGGAGTTATCAAACAGTTATGGGACTGGAAGAATCTCTGAACTTGAAACATTTGTTCAAACAAACAAGGAGAAGTTTGAAAGC....................................................................................................................................................GATAATAATCTTGGATTAGTGATGCAAGTAGTGTCTTCTATGTATAAGCGCAATATTCAGCGGTTAACTCAAACGTACCTAACTCTCTCCCTCCAAGATATTGCTAACACTGTCCAGCTAAGAGACCCCAAACAGGCAGAAATGCATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E239698" ref_strand="+" ref_description="SGN-E239698 [cLED-33-I2]">
      <seq>tacctggagttatcaaacagttatgggactggaagaatctctgaacttgaaacatttgttcaaacaaacaaggagaagtttgaaagcgataataatcttggattagtgatgcaagtagtgtcttctatgtataagcgcaatattcagcggttaactcaaacgtacctaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="32939" stop="32020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32639" g_stop="32553" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32552" i_stop="32405" i_length="148">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32404" g_stop="32320" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="172" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E239698" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>172</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32639" e_stop="32553"/>
          <exon e_start="32404" e_stop="32320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCTGGAGTTATCAAACAGTTATGGGACTGGAAGAATCTCTGAACTTGAAACATTTGTTCAAACAAACAAGGAGAAGTTTGAAAGCGTAAGTTTTCTTGTGGTCAAACTGGTACATTTCCTGATCTTCTAGCAGCTAAGATGAAAGAGCATGGGTGCAAAGTTCTCAACTCCCAAACTCCCATGTTAGTCCATCTTTTGTGGAAGTTGTAACAATCTTTTCATTATATTTTCAGGATAATAATCTTGGATTAGTGATGCAAGTAGTGTCTTCTATGTATAAGCGCAATATTCAGCGGTTAACTCAAACGTACCTAACTC</genome_strand>
        <mrna_strand>TACCTGGAGTTATCAAACAGTTATGGGACTGGAAGAATCTCTGAACTTGAAACATTTGTTCAAACAAACAAGGAGAAGTTTGAAAGC....................................................................................................................................................GATAATAATCTTGGATTAGTGATGCAAGTAGTGTCTTCTATGTATAAGCGCAATATTCAGCGGTTAACTCAAACGTACCTAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E689339" ref_strand="+" ref_description="SGN-E689339 [t3_tus_84_D19]">
      <seq>ctgaaactcataagtgtgttgattgggcgagagagatgaatctgaacatgaattcaatggaatcagtggttgctcaaatccaagggctatcgagcaattcatcagacataactcagcttcacaactttctcaaacaatcggaagagctactccattccgacttctctcgcttgctttcttctctcgctgaactcgatccttctattcactccctaggttttctctatattctggaggcatgcatctcattcccagttgcaaaggagcatgttagtgaactgcttgtttctgtcgctagatttatcaattcatgttctacagagcaaatccagttggcgcccaataagttcatttctgtttgtaaaaagttcaaggatcatgttttcggactggaaactccgattcgtggtgtggctccnattctgactgctattcgtaaactgcaatcctcccctgagcaattaacaacattgcatgccgattttcttcttctttgtctattagcaaagtgctacaaaagcagttccgcaaagcattggaactcttgcacaatgttgtgactgcacctatgtctactctaaatgcaatagcagttgaagcttacaaaaagtacattctggtttcactgattcatcttgggcagttctctaccagttttcccaagtacacttcttccgtggctcanaggaacttgaagaatttctctcagccctacctggagttatcaaacagttatgggactggaagaatctctgaacttgaaacatttgttcaaacaaacaaggagaagtttgaaagcgataataatcttggattaatgatgccagtagtgtcttctatgtataagcgcaatattcagcggttaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="35900" stop="32037"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35600" g_stop="35369" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35368" i_stop="34871" i_length="498">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34870" g_stop="34755" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="348" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34754" i_stop="34663" i_length="92">
            <donor d_prob="0.587" d_score="1.00"/>
            <acceptor a_prob="0.805" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34662" g_stop="34496" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="515" r_length="167" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34495" i_stop="33887" i_length="609">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33886" g_stop="33849" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="553" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33848" i_stop="33722" i_length="127">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33721" g_stop="33632" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="643" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33631" i_stop="33241" i_length="391">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.683" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33240" g_stop="33175" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="644" r_stop="709" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33174" i_stop="32643" i_length="532">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="32642" g_stop="32553" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="710" r_stop="799" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="32552" i_stop="32405" i_length="148">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="32404" g_stop="32337" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="800" r_stop="867" r_length="68" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E689339" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>867</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689339" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35600" e_stop="35369"/>
          <exon e_start="34870" e_stop="34755"/>
          <exon e_start="34662" e_stop="34496"/>
          <exon e_start="33886" e_stop="33849"/>
          <exon e_start="33721" e_stop="33632"/>
          <exon e_start="33240" e_stop="33175"/>
          <exon e_start="32642" e_stop="32553"/>
          <exon e_start="32404" e_stop="32337"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAACTCATAAGTGTGTTGATTGGGCGAGAGAGATGAATCTGAACATGAATTCAATGGAATCAGTGGTTGCTCAAATCCAAGGGCTATCGAGCAATTCATCAGACATAACTCAGCTTCACAACTTTCTCAAACAATCGGAAGAGCTACTCCATTCCGACTTCTCTCGCTTGCTTTCTTCTCTCGCTGAACTCGATCCTTCTATTCACTCCCTAGGTTTTCTCTATATTCTGTAAGTTCCTTTTCATCCTCATCTCTTATTCTTATAACCTAAACCTAGGGTTTCTATTCTGAAGATTATTATTTGTTTAAATTAGCCATTGTTAGGTTATATATATAGATATATTGATTAAAACACCCTGGGCTGTGGCTTAGTCATCGTGGGCTATGGACGATGAGGTTTCATGTTAAAATCCCAATGCAGGTGTTTTTTTCCCATCTGCCCTAACTTTGTTGGACACCTGGTATTGGTACGCGTGGAATTAGCTTGGTGGACACCACGGTGATTATGAAAAAAGAAAAGCTAATTGACAAAGAGGATTGTTATGGTCAACACCAATACATGTAGGATTGAGGCATAGTTGATTGATTGATTACATAATCTATAAAAATAATGCAGAATTGAACCATCCACTGAATTAAAGACCAGTATTTGTGTAACAAGTGCGCGTTGTCTTTTGTACTCTGTCTAGTGTGTATTAATCATATAATTGTGTTTGTTAACTAACAGGGAGGCATGCATCTCATTCCCAGTTGCAAAGGAGCATGTTAGTGAACTGCTTGTTTCTGTCGCTAGATTTATCAATTCATGTTCTACAGAGCAAATCCAGTTGGCGCCCAATAAGTGTAATTTTCTCTGGTTTCTGGAATAGCTTTTGTGAATATTCTTGTTTCTGGTCTAACTTATATTGAGGCACGTCTTCAATTTGTGGTTGCAGTCATTTCTGTTTGTAAAAAGTTCAAGGATCATGTTTTCGGACTGGAAACTCCGATTCGTGGTGTGGCTCCAATGCTGACTGCTATTCGTAAACTGCAATCCTCCCCTGAGCAATTAACAACATTGCATGCCGATTTTCTTCTTCTTTGTCTATTAGCAAAGTGCTACAAAACTGGCTTCTCTGTGCTGGAGGATGACATATATGAGATTGATCAGCCACGGGAGTTTTTTCTCTATTGTTACTACGGGTTAGTTGTTTCAGACTTTCTGCTTAGAAGTTATTTCAGTTGTGTTGGTGTCGTTCCCTTGTTCCGTTCCTTGTTTAAATTTCTCTGTGACTTTTAAAAAAAAAAATTGGAATATTTTTTATGGCAATTCATTAAATCATGCTTTCCTATCAGTGTGTTTTCTAATTTTTATAGGAAAGAGGAACTTTACTCGCCTATGAATATTTGTATTTGCTTGTATAGTTATCTGGTGAAAGAATTAATTTTGTTCAAAAACCCATGGTATTGGTATACAATTATCTACGTCTGCCTTTCTTACCTTTGATATTGTTTAGTTCTCCAACCTAAAGACAAAGTTCTTAACAGCAATGTGAATCACAAGTGATGTATCAATTTAGAATGAGATTGAGTAATTCAATATTTTCTTAATTAAAAAAGTCACTGATATAATCTTTCTATCGCTTTCTGGATTTTTCTGGATTTGTGTCTTATACTTGTTGACATGTCTTATAATTTGAACATAATAACAGGGGAATGGTTTGCATTGGACAAAAGCAGTTCCGCAAAGCATTGGAACTCTTGCACAATGTATGTTACTGTGTTCTCATTCCATGTTTCCTTTATTGGTATTTGGTTTTGTTATTCCCTATTTGCAAGTTACTATATATTATCTATATCTGTCCGTTTGTGCTGATTCTATCTGTTATGCTTCTAGGTTGTGACTGCACCTATGTCTACTCTAAATGCAATAGCAGTTGAAGCTTACAAAAAGTACATTCTGGTTTCACTGATTCATCTTGGGCAGGTGTGTTTTGCCACCATTTTTTACATACTTTTGGTGATAATATTTAGTCAATATTCTTGTGACGTCTCTGTTGGACAACAGTTTGTGAGATCTATGTGTCTTTTCTGGGGCTTGAGCTTGCACTGCCGTATAACCTTCTTATTTTACATTATGTATGATATTATCACCGATGGACTCGTTTAGTTTGAGCCACAATGTGTCAACTTTTTAAAATGATTTTGGCTTGTAATATGCACTTTGAGTAGAGATGTAAGCACCCCCCTCCCCCCCTCACCCAAAACAACAACAAATATGCACAAAGTAAAAAAGAATATGATAGGTCATGTTTCCGATGTTTATTCTTGCTGATTTTCGTTCTCCTGATTAAATTGAGGTTTGCTTATCATGGCAGTTCTCTACCAGTTTTCCCAAGTACACTTCTTCCGTGGCTCAAAGGAACTTGAAGAATTTCTCTCAGGTAATTATTTCAACTGTGCAAACATTGATTCCAAGTAGCACCGACTGTTCCACCCAAAGCAAATTGAAAGGAATATTTTCCCTCAAATGATTTGATGACAATGCAAGCTCAGTTAAGTATGCACAGTTGGCGTTACAATGTTGATGTTAGAAATCTTGTACTGATTCAAGTGTTGTTTCAAAGTATAAGCATTGCATATTTTGTATTAGCACTTAGCAGGCTAGGCATGAAACTACATAAATGATAATGAAACAAGAAATATATCAGTATCTAATAGAAGTGAAAGAAAGAACGCATTTTCGTGTATCGGAAAAGTCACTGTTTAGAGTCCTCAAAATCTGTTTAGTGTACTCAGCGAAGAAATAAGGTGACCAGCTGGAAGCTTCTGAAATCCCAACAATATTTTCTAATATAAAATGAATCCAATTTGGGAGGAGACTGAAGAGACGCCTCATCAAGGATAATTCTCTGTCATGTGTGGTCCTTATGTGTGGAATATAACATAAACTACTTATTATTTCTTTTTGAGCAGCCCTACCTGGAGTTATCAAACAGTTATGGGACTGGAAGAATCTCTGAACTTGAAACATTTGTTCAAACAAACAAGGAGAAGTTTGAAAGCGTAAGTTTTCTTGTGGTCAAACTGGTACATTTCCTGATCTTCTAGCAGCTAAGATGAAAGAGCATGGGTGCAAAGTTCTCAACTCCCAAACTCCCATGTTAGTCCATCTTTTGTGGAAGTTGTAACAATCTTTTCATTATATTTTCAGGATAATAATCTTGGATTAGTGATGCAAGTAGTGTCTTCTATGTATAAGCGCAATATTCAGCGGTTAAC</genome_strand>
        <mrna_strand>CTGAAACTCATAAGTGTGTTGATTGGGCGAGAGAGATGAATCTGAACATGAATTCAATGGAATCAGTGGTTGCTCAAATCCAAGGGCTATCGAGCAATTCATCAGACATAACTCAGCTTCACAACTTTCTCAAACAATCGGAAGAGCTACTCCATTCCGACTTCTCTCGCTTGCTTTCTTCTCTCGCTGAACTCGATCCTTCTATTCACTCCCTAGGTTTTCTCTATATTCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGCATGCATCTCATTCCCAGTTGCAAAGGAGCATGTTAGTGAACTGCTTGTTTCTGTCGCTAGATTTATCAATTCATGTTCTACAGAGCAAATCCAGTTGGCGCCCAATAAGT............................................................................................TCATTTCTGTTTGTAAAAAGTTCAAGGATCATGTTTTCGGACTGGAAACTCCGATTCGTGGTGTGGCTCCNATTCTGACTGCTATTCGTAAACTGCAATCCTCCCCTGAGCAATTAACAACATTGCATGCCGATTTTCTTCTTCTTTGTCTATTAGCAAAGTGCTAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGCAGTTCCGCAAAGCATTGGAACTCTTGCACAAT...............................................................................................................................GTTGTGACTGCACCTATGTCTACTCTAAATGCAATAGCAGTTGAAGCTTACAAAAAGTACATTCTGGTTTCACTGATTCATCTTGGGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................TTCTCTACCAGTTTTCCCAAGTACACTTCTTCCGTGGCTCANAGGAACTTGAAGAATTTCTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCTACCTGGAGTTATCAAACAGTTATGGGACTGGAAGAATCTCTGAACTTGAAACATTTGTTCAAACAAACAAGGAGAAGTTTGAAAGC....................................................................................................................................................GATAATAATCTTGGATTAATGATGCCAGTAGTGTCTTCTATGTATAAGCGCAATATTCAGCGGTTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E704358" ref_strand="+" ref_description="SGN-E704358 [FA24AC08]">
      <seq>ggaatcagtggttgctcaaatccaagggctatcgagcaattcatcagacataactcagcttcacaactttctcaaacaatcggaagagctactccattccgacttctctcgcttgctttcttctctcgctgaactcgatccttctattcactccctaggttttctctatattctggaggcatgcatctcattcccagttgcaaaggagcatgttagtgaactgcttgtttctgtcgctagatttatcaattcatgttctacagagcaaatccagttggcgcccaataagttcatttctgtttgtaaaaagttcaaggatcatgttttcggactggaaactccgattcgtggtgtggctccaatgctgactgctattcgtaaactgcaatcctcccctgagcaattaacaacattgcatgccgattttcttcttctttgtctattagcaaagtgctacaaaactggcttctctgtgctggaggatgacatatatgagattgatcagccacgggagttttttctctattgttactacgggggaatggtttgcattggacaaaagcagttccgcaaagcattggaactcttgcacaatgttgtgactgcacctatgtctactctaaatgcaatagcagttgaagcttacaaaaagtacattctggtttcactgattcatcttgggcagttctctaccagttttcccaagtacacttcttccgtggctcaaaggaacttgaagaatttctctcagccctacctggagttatcaaacagttatgggactggaagaatctctgaacttgaaacatttgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="35842" stop="32280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35542" g_stop="35369" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35368" i_stop="34871" i_length="498">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34870" g_stop="34755" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="290" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34754" i_stop="34663" i_length="92">
            <donor d_prob="0.587" d_score="1.00"/>
            <acceptor a_prob="0.805" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34662" g_stop="34416" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="537" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34415" i_stop="33907" i_length="509">
            <donor d_prob="0.771" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33906" g_stop="33849" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="595" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33848" i_stop="33722" i_length="127">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33721" g_stop="33632" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="685" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33631" i_stop="33241" i_length="391">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.683" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33240" g_stop="33175" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="686" r_stop="751" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33174" i_stop="32643" i_length="532">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="32642" g_stop="32580" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="752" r_stop="814" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E704358" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>814</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704358" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35542" e_stop="35369"/>
          <exon e_start="34870" e_stop="34755"/>
          <exon e_start="34662" e_stop="34416"/>
          <exon e_start="33906" e_stop="33849"/>
          <exon e_start="33721" e_stop="33632"/>
          <exon e_start="33240" e_stop="33175"/>
          <exon e_start="32642" e_stop="32580"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATCAGTGGTTGCTCAAATCCAAGGGCTATCGAGCAATTCATCAGACATAACTCAGCTTCACAACTTTCTCAAACAATCGGAAGAGCTACTCCATTCCGACTTCTCTCGCTTGCTTTCTTCTCTCGCTGAACTCGATCCTTCTATTCACTCCCTAGGTTTTCTCTATATTCTGTAAGTTCCTTTTCATCCTCATCTCTTATTCTTATAACCTAAACCTAGGGTTTCTATTCTGAAGATTATTATTTGTTTAAATTAGCCATTGTTAGGTTATATATATAGATATATTGATTAAAACACCCTGGGCTGTGGCTTAGTCATCGTGGGCTATGGACGATGAGGTTTCATGTTAAAATCCCAATGCAGGTGTTTTTTTCCCATCTGCCCTAACTTTGTTGGACACCTGGTATTGGTACGCGTGGAATTAGCTTGGTGGACACCACGGTGATTATGAAAAAAGAAAAGCTAATTGACAAAGAGGATTGTTATGGTCAACACCAATACATGTAGGATTGAGGCATAGTTGATTGATTGATTACATAATCTATAAAAATAATGCAGAATTGAACCATCCACTGAATTAAAGACCAGTATTTGTGTAACAAGTGCGCGTTGTCTTTTGTACTCTGTCTAGTGTGTATTAATCATATAATTGTGTTTGTTAACTAACAGGGAGGCATGCATCTCATTCCCAGTTGCAAAGGAGCATGTTAGTGAACTGCTTGTTTCTGTCGCTAGATTTATCAATTCATGTTCTACAGAGCAAATCCAGTTGGCGCCCAATAAGTGTAATTTTCTCTGGTTTCTGGAATAGCTTTTGTGAATATTCTTGTTTCTGGTCTAACTTATATTGAGGCACGTCTTCAATTTGTGGTTGCAGTCATTTCTGTTTGTAAAAAGTTCAAGGATCATGTTTTCGGACTGGAAACTCCGATTCGTGGTGTGGCTCCAATGCTGACTGCTATTCGTAAACTGCAATCCTCCCCTGAGCAATTAACAACATTGCATGCCGATTTTCTTCTTCTTTGTCTATTAGCAAAGTGCTACAAAACTGGCTTCTCTGTGCTGGAGGATGACATATATGAGATTGATCAGCCACGGGAGTTTTTTCTCTATTGTTACTACGGGTTAGTTGTTTCAGACTTTCTGCTTAGAAGTTATTTCAGTTGTGTTGGTGTCGTTCCCTTGTTCCGTTCCTTGTTTAAATTTCTCTGTGACTTTTAAAAAAAAAAATTGGAATATTTTTTATGGCAATTCATTAAATCATGCTTTCCTATCAGTGTGTTTTCTAATTTTTATAGGAAAGAGGAACTTTACTCGCCTATGAATATTTGTATTTGCTTGTATAGTTATCTGGTGAAAGAATTAATTTTGTTCAAAAACCCATGGTATTGGTATACAATTATCTACGTCTGCCTTTCTTACCTTTGATATTGTTTAGTTCTCCAACCTAAAGACAAAGTTCTTAACAGCAATGTGAATCACAAGTGATGTATCAATTTAGAATGAGATTGAGTAATTCAATATTTTCTTAATTAAAAAAGTCACTGATATAATCTTTCTATCGCTTTCTGGATTTTTCTGGATTTGTGTCTTATACTTGTTGACATGTCTTATAATTTGAACATAATAACAGGGGAATGGTTTGCATTGGACAAAAGCAGTTCCGCAAAGCATTGGAACTCTTGCACAATGTATGTTACTGTGTTCTCATTCCATGTTTCCTTTATTGGTATTTGGTTTTGTTATTCCCTATTTGCAAGTTACTATATATTATCTATATCTGTCCGTTTGTGCTGATTCTATCTGTTATGCTTCTAGGTTGTGACTGCACCTATGTCTACTCTAAATGCAATAGCAGTTGAAGCTTACAAAAAGTACATTCTGGTTTCACTGATTCATCTTGGGCAGGTGTGTTTTGCCACCATTTTTTACATACTTTTGGTGATAATATTTAGTCAATATTCTTGTGACGTCTCTGTTGGACAACAGTTTGTGAGATCTATGTGTCTTTTCTGGGGCTTGAGCTTGCACTGCCGTATAACCTTCTTATTTTACATTATGTATGATATTATCACCGATGGACTCGTTTAGTTTGAGCCACAATGTGTCAACTTTTTAAAATGATTTTGGCTTGTAATATGCACTTTGAGTAGAGATGTAAGCACCCCCCTCCCCCCCTCACCCAAAACAACAACAAATATGCACAAAGTAAAAAAGAATATGATAGGTCATGTTTCCGATGTTTATTCTTGCTGATTTTCGTTCTCCTGATTAAATTGAGGTTTGCTTATCATGGCAGTTCTCTACCAGTTTTCCCAAGTACACTTCTTCCGTGGCTCAAAGGAACTTGAAGAATTTCTCTCAGGTAATTATTTCAACTGTGCAAACATTGATTCCAAGTAGCACCGACTGTTCCACCCAAAGCAAATTGAAAGGAATATTTTCCCTCAAATGATTTGATGACAATGCAAGCTCAGTTAAGTATGCACAGTTGGCGTTACAATGTTGATGTTAGAAATCTTGTACTGATTCAAGTGTTGTTTCAAAGTATAAGCATTGCATATTTTGTATTAGCACTTAGCAGGCTAGGCATGAAACTACATAAATGATAATGAAACAAGAAATATATCAGTATCTAATAGAAGTGAAAGAAAGAACGCATTTTCGTGTATCGGAAAAGTCACTGTTTAGAGTCCTCAAAATCTGTTTAGTGTACTCAGCGAAGAAATAAGGTGACCAGCTGGAAGCTTCTGAAATCCCAACAATATTTTCTAATATAAAATGAATCCAATTTGGGAGGAGACTGAAGAGACGCCTCATCAAGGATAATTCTCTGTCATGTGTGGTCCTTATGTGTGGAATATAACATAAACTACTTATTATTTCTTTTTGAGCAGCCCTACCTGGAGTTATCAAACAGTTATGGGACTGGAAGAATCTCTGAACTTGAAACATTTGTT</genome_strand>
        <mrna_strand>GGAATCAGTGGTTGCTCAAATCCAAGGGCTATCGAGCAATTCATCAGACATAACTCAGCTTCACAACTTTCTCAAACAATCGGAAGAGCTACTCCATTCCGACTTCTCTCGCTTGCTTTCTTCTCTCGCTGAACTCGATCCTTCTATTCACTCCCTAGGTTTTCTCTATATTCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGCATGCATCTCATTCCCAGTTGCAAAGGAGCATGTTAGTGAACTGCTTGTTTCTGTCGCTAGATTTATCAATTCATGTTCTACAGAGCAAATCCAGTTGGCGCCCAATAAGT............................................................................................TCATTTCTGTTTGTAAAAAGTTCAAGGATCATGTTTTCGGACTGGAAACTCCGATTCGTGGTGTGGCTCCAATGCTGACTGCTATTCGTAAACTGCAATCCTCCCCTGAGCAATTAACAACATTGCATGCCGATTTTCTTCTTCTTTGTCTATTAGCAAAGTGCTACAAAACTGGCTTCTCTGTGCTGGAGGATGACATATATGAGATTGATCAGCCACGGGAGTTTTTTCTCTATTGTTACTACGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAATGGTTTGCATTGGACAAAAGCAGTTCCGCAAAGCATTGGAACTCTTGCACAAT...............................................................................................................................GTTGTGACTGCACCTATGTCTACTCTAAATGCAATAGCAGTTGAAGCTTACAAAAAGTACATTCTGGTTTCACTGATTCATCTTGGGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................TTCTCTACCAGTTTTCCCAAGTACACTTCTTCCGTGGCTCAAAGGAACTTGAAGAATTTCTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCTACCTGGAGTTATCAAACAGTTATGGGACTGGAAGAATCTCTGAACTTGAAACATTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E276599" ref_strand="+" ref_description="SGN-E276599 [cLEN-17-F2]">
      <seq>tttcggactggaaactccgattcgtggtgtggctccaatgctgactgctattcgtaaactgcaatcctcccctgagcaattaacaacattgcatgccgattttcttcttctttgtctattagcaaagtgctacaaaactggcttctctgtgctggaggatgacatatatgagattgatcagccacgggagttttttctctattgttactacgggggaatggtttgcattggacaaaagcagttccgcaaagcattggaactcttgcacaatgttgtgactgcacctatgtctactctaaatgcaatagcagttgaagcttacaaaaagtacattctggtttcactgattcatcttgggcagttctctaccagttttcccaagtacacttcttccgtggctcaaaggaacttgaagaatttctctcagccctacctggagttatcaaacagttatgggactggaagaatctctgaacttgaaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="34928" stop="32285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34628" g_stop="34416" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34415" i_stop="33907" i_length="509">
            <donor d_prob="0.771" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33906" g_stop="33849" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="271" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33848" i_stop="33722" i_length="127">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33721" g_stop="33632" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="361" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33631" i_stop="33241" i_length="391">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.683" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33240" g_stop="33175" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="427" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33174" i_stop="32643" i_length="532">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32642" g_stop="32585" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="485" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E276599" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34628" e_stop="34416"/>
          <exon e_start="33906" e_stop="33849"/>
          <exon e_start="33721" e_stop="33632"/>
          <exon e_start="33240" e_stop="33175"/>
          <exon e_start="32642" e_stop="32585"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCGGACTGGAAACTCCGATTCGTGGTGTGGCTCCAATGCTGACTGCTATTCGTAAACTGCAATCCTCCCCTGAGCAATTAACAACATTGCATGCCGATTTTCTTCTTCTTTGTCTATTAGCAAAGTGCTACAAAACTGGCTTCTCTGTGCTGGAGGATGACATATATGAGATTGATCAGCCACGGGAGTTTTTTCTCTATTGTTACTACGGGTTAGTTGTTTCAGACTTTCTGCTTAGAAGTTATTTCAGTTGTGTTGGTGTCGTTCCCTTGTTCCGTTCCTTGTTTAAATTTCTCTGTGACTTTTAAAAAAAAAAATTGGAATATTTTTTATGGCAATTCATTAAATCATGCTTTCCTATCAGTGTGTTTTCTAATTTTTATAGGAAAGAGGAACTTTACTCGCCTATGAATATTTGTATTTGCTTGTATAGTTATCTGGTGAAAGAATTAATTTTGTTCAAAAACCCATGGTATTGGTATACAATTATCTACGTCTGCCTTTCTTACCTTTGATATTGTTTAGTTCTCCAACCTAAAGACAAAGTTCTTAACAGCAATGTGAATCACAAGTGATGTATCAATTTAGAATGAGATTGAGTAATTCAATATTTTCTTAATTAAAAAAGTCACTGATATAATCTTTCTATCGCTTTCTGGATTTTTCTGGATTTGTGTCTTATACTTGTTGACATGTCTTATAATTTGAACATAATAACAGGGGAATGGTTTGCATTGGACAAAAGCAGTTCCGCAAAGCATTGGAACTCTTGCACAATGTATGTTACTGTGTTCTCATTCCATGTTTCCTTTATTGGTATTTGGTTTTGTTATTCCCTATTTGCAAGTTACTATATATTATCTATATCTGTCCGTTTGTGCTGATTCTATCTGTTATGCTTCTAGGTTGTGACTGCACCTATGTCTACTCTAAATGCAATAGCAGTTGAAGCTTACAAAAAGTACATTCTGGTTTCACTGATTCATCTTGGGCAGGTGTGTTTTGCCACCATTTTTTACATACTTTTGGTGATAATATTTAGTCAATATTCTTGTGACGTCTCTGTTGGACAACAGTTTGTGAGATCTATGTGTCTTTTCTGGGGCTTGAGCTTGCACTGCCGTATAACCTTCTTATTTTACATTATGTATGATATTATCACCGATGGACTCGTTTAGTTTGAGCCACAATGTGTCAACTTTTTAAAATGATTTTGGCTTGTAATATGCACTTTGAGTAGAGATGTAAGCACCCCCCTCCCCCCCTCACCCAAAACAACAACAAATATGCACAAAGTAAAAAAGAATATGATAGGTCATGTTTCCGATGTTTATTCTTGCTGATTTTCGTTCTCCTGATTAAATTGAGGTTTGCTTATCATGGCAGTTCTCTACCAGTTTTCCCAAGTACACTTCTTCCGTGGCTCAAAGGAACTTGAAGAATTTCTCTCAGGTAATTATTTCAACTGTGCAAACATTGATTCCAAGTAGCACCGACTGTTCCACCCAAAGCAAATTGAAAGGAATATTTTCCCTCAAATGATTTGATGACAATGCAAGCTCAGTTAAGTATGCACAGTTGGCGTTACAATGTTGATGTTAGAAATCTTGTACTGATTCAAGTGTTGTTTCAAAGTATAAGCATTGCATATTTTGTATTAGCACTTAGCAGGCTAGGCATGAAACTACATAAATGATAATGAAACAAGAAATATATCAGTATCTAATAGAAGTGAAAGAAAGAACGCATTTTCGTGTATCGGAAAAGTCACTGTTTAGAGTCCTCAAAATCTGTTTAGTGTACTCAGCGAAGAAATAAGGTGACCAGCTGGAAGCTTCTGAAATCCCAACAATATTTTCTAATATAAAATGAATCCAATTTGGGAGGAGACTGAAGAGACGCCTCATCAAGGATAATTCTCTGTCATGTGTGGTCCTTATGTGTGGAATATAACATAAACTACTTATTATTTCTTTTTGAGCAGCCCTACCTGGAGTTATCAAACAGTTATGGGACTGGAAGAATCTCTGAACTTGAAACAT</genome_strand>
        <mrna_strand>TTTCGGACTGGAAACTCCGATTCGTGGTGTGGCTCCAATGCTGACTGCTATTCGTAAACTGCAATCCTCCCCTGAGCAATTAACAACATTGCATGCCGATTTTCTTCTTCTTTGTCTATTAGCAAAGTGCTACAAAACTGGCTTCTCTGTGCTGGAGGATGACATATATGAGATTGATCAGCCACGGGAGTTTTTTCTCTATTGTTACTACGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAATGGTTTGCATTGGACAAAAGCAGTTCCGCAAAGCATTGGAACTCTTGCACAAT...............................................................................................................................GTTGTGACTGCACCTATGTCTACTCTAAATGCAATAGCAGTTGAAGCTTACAAAAAGTACATTCTGGTTTCACTGATTCATCTTGGGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................TTCTCTACCAGTTTTCCCAAGTACACTTCTTCCGTGGCTCAAAGGAACTTGAAGAATTTCTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCTACCTGGAGTTATCAAACAGTTATGGGACTGGAAGAATCTCTGAACTTGAAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E689338" ref_strand="+" ref_description="SGN-E689338 [t3_tus_84_D18]">
      <seq>ctttaaaaaagtcagaagtgtgnngatngggcgagagacccctttaagaacatgaattcaatggaatcagtggttgctcaaatccaagggctatcgagcaattcatcagacatacctcagcttcacaactttctcaaacaatcggaagagctactccattccgacttctctcgcttgctttcttctctcgctgaactcgatccttctattcactccctaggttttctctatattctggaggcatgcatctcattcccagttgcaaaggagcatgttagtgaactgcttgtttctgtcgctagatttatcaattcatgttctacagagcaaatcttttttggcgcccaataagttcatttctgtttgtaaaaagttcaaggatcatgttttcggactggaaactccgattcgtggtgtggctcctattctgactgctattcgtaaactgcaatcctcccctgagcaattaacaacattgcatgccgattttcttcttctttgtctattagcatagtgctacaaaagcagttccgcaaagcattggaactcttgcacaatgttgtgactgcacctatgtctactctaaatgcaatagcagttgaagcttactaaaagcacattctggtttcactgattcatctagggcagttctctacaagttttcccaagtaaacttcttccgtggctcacaggaacttgaagaaattctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="35857" stop="32878"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35604" g_stop="35369" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.915"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35368" i_stop="34871" i_length="498">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34870" g_stop="34755" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="353" r_length="117" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34754" i_stop="34663" i_length="92">
            <donor d_prob="0.587" d_score="0.90"/>
            <acceptor a_prob="0.805" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34662" g_stop="34496" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="520" r_length="167" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34495" i_stop="33887" i_length="609">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33886" g_stop="33849" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="558" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33848" i_stop="33722" i_length="127">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33721" g_stop="33632" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="648" r_length="90" r_score="0.967"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33631" i_stop="33241" i_length="391">
            <donor d_prob="0.977" d_score="0.94"/>
            <acceptor a_prob="0.683" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33240" g_stop="33178" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="649" r_stop="711" r_length="63" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E689338" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35604" e_stop="35369"/>
          <exon e_start="34870" e_stop="34755"/>
          <exon e_start="34662" e_stop="34496"/>
          <exon e_start="33886" e_stop="33849"/>
          <exon e_start="33721" e_stop="33632"/>
          <exon e_start="33240" e_stop="33178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGCTGAAACTCATAAGTGTGTTGATTGGGCGAGAGAGATGAATCTGAACATGAATTCAATGGAATCAGTGGTTGCTCAAATCCAAGGGCTATCGAGCAATTCATCAGACATAACTCAGCTTCACAACTTTCTCAAACAATCGGAAGAGCTACTCCATTCCGACTTCTCTCGCTTGCTTTCTTCTCTCGCTGAACTCGATCCTTCTATTCACTCCCTAGGTTTTCTCTATATTCTGTAAGTTCCTTTTCATCCTCATCTCTTATTCTTATAACCTAAACCTAGGGTTTCTATTCTGAAGATTATTATTTGTTTAAATTAGCCATTGTTAGGTTATATATATAGATATATTGATTAAAACACCCTGGGCTGTGGCTTAGTCATCGTGGGCTATGGACGATGAGGTTTCATGTTAAAATCCCAATGCAGGTGTTTTTTTCCCATCTGCCCTAACTTTGTTGGACACCTGGTATTGGTACGCGTGGAATTAGCTTGGTGGACACCACGGTGATTATGAAAAAAGAAAAGCTAATTGACAAAGAGGATTGTTATGGTCAACACCAATACATGTAGGATTGAGGCATAGTTGATTGATTGATTACATAATCTATAAAAATAATGCAGAATTGAACCATCCACTGAATTAAAGACCAGTATTTGTGTAACAAGTGCGCGTTGTCTTTTGTACTCTGTCTAGTGTGTATTAATCATATAATTGTGTTTGTTAACTAACAGGGAGGCATGCATCTCATTCCCAGTTGCAAAGGAGCATGTTAGTGAACTGCTTGTTTCTGTCGCTAGATTTATCAATTCATGTTCTACAGAGCAAATC-CAGTTGGCGCCCAATAAGTGTAATTTTCTCTGGTTTCTGGAATAGCTTTTGTGAATATTCTTGTTTCTGGTCTAACTTATATTGAGGCACGTCTTCAATTTGTGGTTGCAGTCATTTCTGTTTGTAAAAAGTTCAAGGATCATGTTTTCGGACTGGAAACTCCGATTCGTGGTGTGGCTCCAATGCTGACTGCTATTCGTAAACTGCAATCCTCCCCTGAGCAATTAACAACATTGCATGCCGATTTTCTTCTTCTTTGTCTATTAGCAAAGTGCTACAAAACTGGCTTCTCTGTGCTGGAGGATGACATATATGAGATTGATCAGCCACGGGAGTTTTTTCTCTATTGTTACTACGGGTTAGTTGTTTCAGACTTTCTGCTTAGAAGTTATTTCAGTTGTGTTGGTGTCGTTCCCTTGTTCCGTTCCTTGTTTAAATTTCTCTGTGACTTTTAAAAAAAAAAATTGGAATATTTTTTATGGCAATTCATTAAATCATGCTTTCCTATCAGTGTGTTTTCTAATTTTTATAGGAAAGAGGAACTTTACTCGCCTATGAATATTTGTATTTGCTTGTATAGTTATCTGGTGAAAGAATTAATTTTGTTCAAAAACCCATGGTATTGGTATACAATTATCTACGTCTGCCTTTCTTACCTTTGATATTGTTTAGTTCTCCAACCTAAAGACAAAGTTCTTAACAGCAATGTGAATCACAAGTGATGTATCAATTTAGAATGAGATTGAGTAATTCAATATTTTCTTAATTAAAAAAGTCACTGATATAATCTTTCTATCGCTTTCTGGATTTTTCTGGATTTGTGTCTTATACTTGTTGACATGTCTTATAATTTGAACATAATAACAGGGGAATGGTTTGCATTGGACAAAAGCAGTTCCGCAAAGCATTGGAACTCTTGCACAATGTATGTTACTGTGTTCTCATTCCATGTTTCCTTTATTGGTATTTGGTTTTGTTATTCCCTATTTGCAAGTTACTATATATTATCTATATCTGTCCGTTTGTGCTGATTCTATCTGTTATGCTTCTAGGTTGTGACTGCACCTATGTCTACTCTAAATGCAATAGCAGTTGAAGCTTACAAAAAGTACATTCTGGTTTCACTGATTCATCTTGGGCAGGTGTGTTTTGCCACCATTTTTTACATACTTTTGGTGATAATATTTAGTCAATATTCTTGTGACGTCTCTGTTGGACAACAGTTTGTGAGATCTATGTGTCTTTTCTGGGGCTTGAGCTTGCACTGCCGTATAACCTTCTTATTTTACATTATGTATGATATTATCACCGATGGACTCGTTTAGTTTGAGCCACAATGTGTCAACTTTTTAAAATGATTTTGGCTTGTAATATGCACTTTGAGTAGAGATGTAAGCACCCCCCTCCCCCCCTCACCCAAAACAACAACAAATATGCACAAAGTAAAAAAGAATATGATAGGTCATGTTTCCGATGTTTATTCTTGCTGATTTTCGTTCTCCTGATTAAATTGAGGTTTGCTTATCATGGCAGTTCTCTACCAGTTTTCCCAAGTACACTTCTTCCGTGGCTCAAAGGAACTTGAAGAATTTCTCT</genome_strand>
        <mrna_strand>CTTTAAAAAAGTCAGAAGTGTGNNGATNGGGCGAGAGACCCCTTTAAGAACATGAATTCAATGGAATCAGTGGTTGCTCAAATCCAAGGGCTATCGAGCAATTCATCAGACATACCTCAGCTTCACAACTTTCTCAAACAATCGGAAGAGCTACTCCATTCCGACTTCTCTCGCTTGCTTTCTTCTCTCGCTGAACTCGATCCTTCTATTCACTCCCTAGGTTTTCTCTATATTCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGCATGCATCTCATTCCCAGTTGCAAAGGAGCATGTTAGTGAACTGCTTGTTTCTGTCGCTAGATTTATCAATTCATGTTCTACAGAGCAAATCTTTTTTGGCGCCCAATAAGT............................................................................................TCATTTCTGTTTGTAAAAAGTTCAAGGATCATGTTTTCGGACTGGAAACTCCGATTCGTGGTGTGGCTCCTATTCTGACTGCTATTCGTAAACTGCAATCCTCCCCTGAGCAATTAACAACATTGCATGCCGATTTTCTTCTTCTTTGTCTATTAGCATAGTGCTAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGCAGTTCCGCAAAGCATTGGAACTCTTGCACAAT...............................................................................................................................GTTGTGACTGCACCTATGTCTACTCTAAATGCAATAGCAGTTGAAGCTTACTAAAAGCACATTCTGGTTTCACTGATTCATCTAGGGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................TTCTCTACAAGTTTTCCCAAGTAAACTTCTTCCGTGGCTCACAGGAACTTGAAGAAATTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E332692" ref_strand="+" ref_description="SGN-E332692 [cTOD-18-C17]">
      <seq>ttgattgggcgagagagatgaatctgaacatgaattcaatggaatcagtggttgctcaaatccaagggctatcgagcaattcatcagacataactcagcttcacaactttctcaaacaatcggaagagctactccattccgacttctctcgcttgctttcttctctcgctgaactcgatccttctattcactccctaggttttctctatattctggaggcatgcatctcattcccagttgcaaaggagcatgttagtgaactgcttgtttctgtcgctagatttatcaattcatgttctacagagcaaatccagttggcgcccaataagttcatttctgtttgtaaaaagttcaaggatcatgttttcggactggaaactccgattcgtggtgtggctccaatgctgactgctattcgtaaactgcaatcctcccctgagcaattaacaacattgcatgccgattttcttcttctttgtctattagcaaagtgctacaaaactggcttctctgtgctggaggatgacatatatgagattgatcagccacgggagttttttctctattgttactacgggggaatggtttgcattggacaaaagcagttccgcaaagcattggaactcttgcacaatgttgtgactgcacctatgtctactctaaatgcaatagcagttgaagcttacaaaagtacattctggtttcactgattcatcttgggcagntctctaccagttttcccagtacacttcttccgtggctcaaaggacttgaagatttctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="35882" stop="32878"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35582" g_stop="35369" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35368" i_stop="34871" i_length="498">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34870" g_stop="34755" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="330" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34754" i_stop="34663" i_length="92">
            <donor d_prob="0.587" d_score="1.00"/>
            <acceptor a_prob="0.805" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34662" g_stop="34416" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="577" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34415" i_stop="33907" i_length="509">
            <donor d_prob="0.771" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33906" g_stop="33849" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="635" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33848" i_stop="33722" i_length="127">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33721" g_stop="33632" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="636" r_stop="724" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33631" i_stop="33241" i_length="391">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.683" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33240" g_stop="33178" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="725" r_stop="784" r_length="60" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E332692" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35582" e_stop="35369"/>
          <exon e_start="34870" e_stop="34755"/>
          <exon e_start="34662" e_stop="34416"/>
          <exon e_start="33906" e_stop="33849"/>
          <exon e_start="33721" e_stop="33632"/>
          <exon e_start="33240" e_stop="33178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTGGGCGAGAGAGATGAATCTGAACATGAATTCAATGGAATCAGTGGTTGCTCAAATCCAAGGGCTATCGAGCAATTCATCAGACATAACTCAGCTTCACAACTTTCTCAAACAATCGGAAGAGCTACTCCATTCCGACTTCTCTCGCTTGCTTTCTTCTCTCGCTGAACTCGATCCTTCTATTCACTCCCTAGGTTTTCTCTATATTCTGTAAGTTCCTTTTCATCCTCATCTCTTATTCTTATAACCTAAACCTAGGGTTTCTATTCTGAAGATTATTATTTGTTTAAATTAGCCATTGTTAGGTTATATATATAGATATATTGATTAAAACACCCTGGGCTGTGGCTTAGTCATCGTGGGCTATGGACGATGAGGTTTCATGTTAAAATCCCAATGCAGGTGTTTTTTTCCCATCTGCCCTAACTTTGTTGGACACCTGGTATTGGTACGCGTGGAATTAGCTTGGTGGACACCACGGTGATTATGAAAAAAGAAAAGCTAATTGACAAAGAGGATTGTTATGGTCAACACCAATACATGTAGGATTGAGGCATAGTTGATTGATTGATTACATAATCTATAAAAATAATGCAGAATTGAACCATCCACTGAATTAAAGACCAGTATTTGTGTAACAAGTGCGCGTTGTCTTTTGTACTCTGTCTAGTGTGTATTAATCATATAATTGTGTTTGTTAACTAACAGGGAGGCATGCATCTCATTCCCAGTTGCAAAGGAGCATGTTAGTGAACTGCTTGTTTCTGTCGCTAGATTTATCAATTCATGTTCTACAGAGCAAATCCAGTTGGCGCCCAATAAGTGTAATTTTCTCTGGTTTCTGGAATAGCTTTTGTGAATATTCTTGTTTCTGGTCTAACTTATATTGAGGCACGTCTTCAATTTGTGGTTGCAGTCATTTCTGTTTGTAAAAAGTTCAAGGATCATGTTTTCGGACTGGAAACTCCGATTCGTGGTGTGGCTCCAATGCTGACTGCTATTCGTAAACTGCAATCCTCCCCTGAGCAATTAACAACATTGCATGCCGATTTTCTTCTTCTTTGTCTATTAGCAAAGTGCTACAAAACTGGCTTCTCTGTGCTGGAGGATGACATATATGAGATTGATCAGCCACGGGAGTTTTTTCTCTATTGTTACTACGGGTTAGTTGTTTCAGACTTTCTGCTTAGAAGTTATTTCAGTTGTGTTGGTGTCGTTCCCTTGTTCCGTTCCTTGTTTAAATTTCTCTGTGACTTTTAAAAAAAAAAATTGGAATATTTTTTATGGCAATTCATTAAATCATGCTTTCCTATCAGTGTGTTTTCTAATTTTTATAGGAAAGAGGAACTTTACTCGCCTATGAATATTTGTATTTGCTTGTATAGTTATCTGGTGAAAGAATTAATTTTGTTCAAAAACCCATGGTATTGGTATACAATTATCTACGTCTGCCTTTCTTACCTTTGATATTGTTTAGTTCTCCAACCTAAAGACAAAGTTCTTAACAGCAATGTGAATCACAAGTGATGTATCAATTTAGAATGAGATTGAGTAATTCAATATTTTCTTAATTAAAAAAGTCACTGATATAATCTTTCTATCGCTTTCTGGATTTTTCTGGATTTGTGTCTTATACTTGTTGACATGTCTTATAATTTGAACATAATAACAGGGGAATGGTTTGCATTGGACAAAAGCAGTTCCGCAAAGCATTGGAACTCTTGCACAATGTATGTTACTGTGTTCTCATTCCATGTTTCCTTTATTGGTATTTGGTTTTGTTATTCCCTATTTGCAAGTTACTATATATTATCTATATCTGTCCGTTTGTGCTGATTCTATCTGTTATGCTTCTAGGTTGTGACTGCACCTATGTCTACTCTAAATGCAATAGCAGTTGAAGCTTACAAAAAGTACATTCTGGTTTCACTGATTCATCTTGGGCAGGTGTGTTTTGCCACCATTTTTTACATACTTTTGGTGATAATATTTAGTCAATATTCTTGTGACGTCTCTGTTGGACAACAGTTTGTGAGATCTATGTGTCTTTTCTGGGGCTTGAGCTTGCACTGCCGTATAACCTTCTTATTTTACATTATGTATGATATTATCACCGATGGACTCGTTTAGTTTGAGCCACAATGTGTCAACTTTTTAAAATGATTTTGGCTTGTAATATGCACTTTGAGTAGAGATGTAAGCACCCCCCTCCCCCCCTCACCCAAAACAACAACAAATATGCACAAAGTAAAAAAGAATATGATAGGTCATGTTTCCGATGTTTATTCTTGCTGATTTTCGTTCTCCTGATTAAATTGAGGTTTGCTTATCATGGCAGTTCTCTACCAGTTTTCCCAAGTACACTTCTTCCGTGGCTCAAAGGAACTTGAAGAATTTCTCT</genome_strand>
        <mrna_strand>TTGATTGGGCGAGAGAGATGAATCTGAACATGAATTCAATGGAATCAGTGGTTGCTCAAATCCAAGGGCTATCGAGCAATTCATCAGACATAACTCAGCTTCACAACTTTCTCAAACAATCGGAAGAGCTACTCCATTCCGACTTCTCTCGCTTGCTTTCTTCTCTCGCTGAACTCGATCCTTCTATTCACTCCCTAGGTTTTCTCTATATTCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGCATGCATCTCATTCCCAGTTGCAAAGGAGCATGTTAGTGAACTGCTTGTTTCTGTCGCTAGATTTATCAATTCATGTTCTACAGAGCAAATCCAGTTGGCGCCCAATAAGT............................................................................................TCATTTCTGTTTGTAAAAAGTTCAAGGATCATGTTTTCGGACTGGAAACTCCGATTCGTGGTGTGGCTCCAATGCTGACTGCTATTCGTAAACTGCAATCCTCCCCTGAGCAATTAACAACATTGCATGCCGATTTTCTTCTTCTTTGTCTATTAGCAAAGTGCTACAAAACTGGCTTCTCTGTGCTGGAGGATGACATATATGAGATTGATCAGCCACGGGAGTTTTTTCTCTATTGTTACTACGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAATGGTTTGCATTGGACAAAAGCAGTTCCGCAAAGCATTGGAACTCTTGCACAAT...............................................................................................................................GTTGTGACTGCACCTATGTCTACTCTAAATGCAATAGCAGTTGAAGCTTAC-AAAAGTACATTCTGGTTTCACTGATTCATCTTGGGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................NTCTCTACCAGTTTTCCC-AGTACACTTCTTCCGTGGCTCAAAGG-ACTTGAAG-ATTTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E722932" ref_strand="+" ref_description="SGN-E722932 [FC18DB09]">
      <seq>aatcggccgaattctcttagacgtgaatctgctgaaactcataagtgtgttgattgggcgagagagatgaatctgaacatgaattcaatggaatcagtggttgctcaaatccaagggctatcgagcaattcatcagacataactcagcttcacaactttctcaaacaatcggaagagctactccattccgacttctctcgcttgctttcttctctcgctgaactcgatccttctattcactccctaggttttctctatattctggaggcatgcatctcattcccagttgcaaaggagcatgttagtgaactgcttgtttctgtcgctagatttatcaattcatgttctacagagcaaatccagttggcgcccaataagttcatttctgtttgtaaaaagttcaaggatcatgttttcggactggaaactccgattcgtggtgtggctccaatgctgactgctattcgtaaactgcaatcctcccctgagcaattaacaacattgcatgccgattttcttcttctttgtctattagcaaagtgctacaaaactggcttctctgtgctggaggatgacatatatgagattgatcagccacgggagttttttctctattgttactacgggggaatggtttgcattggacaaaagcagttccgcaaagcattggaactcttgcacaatgttgtgactgcacctatgtctactctaaatgcaatagcagttgaagcttacaaaaagtacattctggtttcactgattcatcttgggcagttctctaccagttttcccaagtacacttcttccgtggctcaaaggaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="35919" stop="32891"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35619" g_stop="35369" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="263" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35368" i_stop="34871" i_length="498">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34870" g_stop="34755" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="379" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34754" i_stop="34663" i_length="92">
            <donor d_prob="0.587" d_score="1.00"/>
            <acceptor a_prob="0.805" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34662" g_stop="34416" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="626" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34415" i_stop="33907" i_length="509">
            <donor d_prob="0.771" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33906" g_stop="33849" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="684" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33848" i_stop="33722" i_length="127">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33721" g_stop="33632" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="685" r_stop="774" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33631" i_stop="33241" i_length="391">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.683" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33240" g_stop="33191" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="775" r_stop="824" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E722932" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>812</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35619" e_stop="35369"/>
          <exon e_start="34870" e_stop="34755"/>
          <exon e_start="34662" e_stop="34416"/>
          <exon e_start="33906" e_stop="33849"/>
          <exon e_start="33721" e_stop="33632"/>
          <exon e_start="33240" e_stop="33191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTAGACGTGAATCTGCTGAAACTCATAAGTGTGTTGATTGGGCGAGAGAGATGAATCTGAACATGAATTCAATGGAATCAGTGGTTGCTCAAATCCAAGGGCTATCGAGCAATTCATCAGACATAACTCAGCTTCACAACTTTCTCAAACAATCGGAAGAGCTACTCCATTCCGACTTCTCTCGCTTGCTTTCTTCTCTCGCTGAACTCGATCCTTCTATTCACTCCCTAGGTTTTCTCTATATTCTGTAAGTTCCTTTTCATCCTCATCTCTTATTCTTATAACCTAAACCTAGGGTTTCTATTCTGAAGATTATTATTTGTTTAAATTAGCCATTGTTAGGTTATATATATAGATATATTGATTAAAACACCCTGGGCTGTGGCTTAGTCATCGTGGGCTATGGACGATGAGGTTTCATGTTAAAATCCCAATGCAGGTGTTTTTTTCCCATCTGCCCTAACTTTGTTGGACACCTGGTATTGGTACGCGTGGAATTAGCTTGGTGGACACCACGGTGATTATGAAAAAAGAAAAGCTAATTGACAAAGAGGATTGTTATGGTCAACACCAATACATGTAGGATTGAGGCATAGTTGATTGATTGATTACATAATCTATAAAAATAATGCAGAATTGAACCATCCACTGAATTAAAGACCAGTATTTGTGTAACAAGTGCGCGTTGTCTTTTGTACTCTGTCTAGTGTGTATTAATCATATAATTGTGTTTGTTAACTAACAGGGAGGCATGCATCTCATTCCCAGTTGCAAAGGAGCATGTTAGTGAACTGCTTGTTTCTGTCGCTAGATTTATCAATTCATGTTCTACAGAGCAAATCCAGTTGGCGCCCAATAAGTGTAATTTTCTCTGGTTTCTGGAATAGCTTTTGTGAATATTCTTGTTTCTGGTCTAACTTATATTGAGGCACGTCTTCAATTTGTGGTTGCAGTCATTTCTGTTTGTAAAAAGTTCAAGGATCATGTTTTCGGACTGGAAACTCCGATTCGTGGTGTGGCTCCAATGCTGACTGCTATTCGTAAACTGCAATCCTCCCCTGAGCAATTAACAACATTGCATGCCGATTTTCTTCTTCTTTGTCTATTAGCAAAGTGCTACAAAACTGGCTTCTCTGTGCTGGAGGATGACATATATGAGATTGATCAGCCACGGGAGTTTTTTCTCTATTGTTACTACGGGTTAGTTGTTTCAGACTTTCTGCTTAGAAGTTATTTCAGTTGTGTTGGTGTCGTTCCCTTGTTCCGTTCCTTGTTTAAATTTCTCTGTGACTTTTAAAAAAAAAAATTGGAATATTTTTTATGGCAATTCATTAAATCATGCTTTCCTATCAGTGTGTTTTCTAATTTTTATAGGAAAGAGGAACTTTACTCGCCTATGAATATTTGTATTTGCTTGTATAGTTATCTGGTGAAAGAATTAATTTTGTTCAAAAACCCATGGTATTGGTATACAATTATCTACGTCTGCCTTTCTTACCTTTGATATTGTTTAGTTCTCCAACCTAAAGACAAAGTTCTTAACAGCAATGTGAATCACAAGTGATGTATCAATTTAGAATGAGATTGAGTAATTCAATATTTTCTTAATTAAAAAAGTCACTGATATAATCTTTCTATCGCTTTCTGGATTTTTCTGGATTTGTGTCTTATACTTGTTGACATGTCTTATAATTTGAACATAATAACAGGGGAATGGTTTGCATTGGACAAAAGCAGTTCCGCAAAGCATTGGAACTCTTGCACAATGTATGTTACTGTGTTCTCATTCCATGTTTCCTTTATTGGTATTTGGTTTTGTTATTCCCTATTTGCAAGTTACTATATATTATCTATATCTGTCCGTTTGTGCTGATTCTATCTGTTATGCTTCTAGGTTGTGACTGCACCTATGTCTACTCTAAATGCAATAGCAGTTGAAGCTTACAAAAAGTACATTCTGGTTTCACTGATTCATCTTGGGCAGGTGTGTTTTGCCACCATTTTTTACATACTTTTGGTGATAATATTTAGTCAATATTCTTGTGACGTCTCTGTTGGACAACAGTTTGTGAGATCTATGTGTCTTTTCTGGGGCTTGAGCTTGCACTGCCGTATAACCTTCTTATTTTACATTATGTATGATATTATCACCGATGGACTCGTTTAGTTTGAGCCACAATGTGTCAACTTTTTAAAATGATTTTGGCTTGTAATATGCACTTTGAGTAGAGATGTAAGCACCCCCCTCCCCCCCTCACCCAAAACAACAACAAATATGCACAAAGTAAAAAAGAATATGATAGGTCATGTTTCCGATGTTTATTCTTGCTGATTTTCGTTCTCCTGATTAAATTGAGGTTTGCTTATCATGGCAGTTCTCTACCAGTTTTCCCAAGTACACTTCTTCCGTGGCTCAAAGGAACTT</genome_strand>
        <mrna_strand>TCTCTTAGACGTGAATCTGCTGAAACTCATAAGTGTGTTGATTGGGCGAGAGAGATGAATCTGAACATGAATTCAATGGAATCAGTGGTTGCTCAAATCCAAGGGCTATCGAGCAATTCATCAGACATAACTCAGCTTCACAACTTTCTCAAACAATCGGAAGAGCTACTCCATTCCGACTTCTCTCGCTTGCTTTCTTCTCTCGCTGAACTCGATCCTTCTATTCACTCCCTAGGTTTTCTCTATATTCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGCATGCATCTCATTCCCAGTTGCAAAGGAGCATGTTAGTGAACTGCTTGTTTCTGTCGCTAGATTTATCAATTCATGTTCTACAGAGCAAATCCAGTTGGCGCCCAATAAGT............................................................................................TCATTTCTGTTTGTAAAAAGTTCAAGGATCATGTTTTCGGACTGGAAACTCCGATTCGTGGTGTGGCTCCAATGCTGACTGCTATTCGTAAACTGCAATCCTCCCCTGAGCAATTAACAACATTGCATGCCGATTTTCTTCTTCTTTGTCTATTAGCAAAGTGCTACAAAACTGGCTTCTCTGTGCTGGAGGATGACATATATGAGATTGATCAGCCACGGGAGTTTTTTCTCTATTGTTACTACGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAATGGTTTGCATTGGACAAAAGCAGTTCCGCAAAGCATTGGAACTCTTGCACAAT...............................................................................................................................GTTGTGACTGCACCTATGTCTACTCTAAATGCAATAGCAGTTGAAGCTTACAAAAAGTACATTCTGGTTTCACTGATTCATCTTGGGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................TTCTCTACCAGTTTTCCCAAGTACACTTCTTCCGTGGCTCAAAGGAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E332597" ref_strand="+" ref_description="SGN-E332597 [cTOD-18-M16]">
      <seq>ttgattgggcgagagagatgaatctgaacatgaattcaatggaatcagtggttgctcaaatccaagggctatcgagcaattcatcagacataactcagcttcacaactttctcaaacaatcggaagagctactccattccgacttctctcgcttgctttcttctctcgctgaactcgatccttctattcactccctaggttttctctatattctggaggcatgcatctcattcccagttgcaaaggagcatgttagtgaactgcttgtttctgtcgctagatttatcaattcatgttctacagagcaaatccagttggcgcccaataagttcatttctgtttgtaaaaagttcaaggatcatgttttcggactggaaactccgattcgtggtgtggctccaatgctgactgctattcgtaaactgcaatcctcccctgagcaattaacaacattgcatgccgattttcttcttctttgtctattagcaaagtgctacaaaactggcttctctgtgctggaggatgacatatatgagattgatcagccacgggagttttttctctattgttactacggggggaatggtttgcattggacaaaagcagttccgcaaagcattggaactcttgcacaatgttgtgactgcacctatgtctactctaaatgcaatagcagttgaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="35882" stop="33374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35582" g_stop="35369" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35368" i_stop="34871" i_length="498">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34870" g_stop="34755" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="330" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34754" i_stop="34663" i_length="92">
            <donor d_prob="0.587" d_score="1.00"/>
            <acceptor a_prob="0.805" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34662" g_stop="34416" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="577" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34415" i_stop="33907" i_length="509">
            <donor d_prob="0.771" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33906" g_stop="33849" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="636" r_length="59" r_score="0.966"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33848" i_stop="33722" i_length="127">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33721" g_stop="33674" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="684" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E332597" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332597" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35582" e_stop="35369"/>
          <exon e_start="34870" e_stop="34755"/>
          <exon e_start="34662" e_stop="34416"/>
          <exon e_start="33906" e_stop="33849"/>
          <exon e_start="33721" e_stop="33674"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTGGGCGAGAGAGATGAATCTGAACATGAATTCAATGGAATCAGTGGTTGCTCAAATCCAAGGGCTATCGAGCAATTCATCAGACATAACTCAGCTTCACAACTTTCTCAAACAATCGGAAGAGCTACTCCATTCCGACTTCTCTCGCTTGCTTTCTTCTCTCGCTGAACTCGATCCTTCTATTCACTCCCTAGGTTTTCTCTATATTCTGTAAGTTCCTTTTCATCCTCATCTCTTATTCTTATAACCTAAACCTAGGGTTTCTATTCTGAAGATTATTATTTGTTTAAATTAGCCATTGTTAGGTTATATATATAGATATATTGATTAAAACACCCTGGGCTGTGGCTTAGTCATCGTGGGCTATGGACGATGAGGTTTCATGTTAAAATCCCAATGCAGGTGTTTTTTTCCCATCTGCCCTAACTTTGTTGGACACCTGGTATTGGTACGCGTGGAATTAGCTTGGTGGACACCACGGTGATTATGAAAAAAGAAAAGCTAATTGACAAAGAGGATTGTTATGGTCAACACCAATACATGTAGGATTGAGGCATAGTTGATTGATTGATTACATAATCTATAAAAATAATGCAGAATTGAACCATCCACTGAATTAAAGACCAGTATTTGTGTAACAAGTGCGCGTTGTCTTTTGTACTCTGTCTAGTGTGTATTAATCATATAATTGTGTTTGTTAACTAACAGGGAGGCATGCATCTCATTCCCAGTTGCAAAGGAGCATGTTAGTGAACTGCTTGTTTCTGTCGCTAGATTTATCAATTCATGTTCTACAGAGCAAATCCAGTTGGCGCCCAATAAGTGTAATTTTCTCTGGTTTCTGGAATAGCTTTTGTGAATATTCTTGTTTCTGGTCTAACTTATATTGAGGCACGTCTTCAATTTGTGGTTGCAGTCATTTCTGTTTGTAAAAAGTTCAAGGATCATGTTTTCGGACTGGAAACTCCGATTCGTGGTGTGGCTCCAATGCTGACTGCTATTCGTAAACTGCAATCCTCCCCTGAGCAATTAACAACATTGCATGCCGATTTTCTTCTTCTTTGTCTATTAGCAAAGTGCTACAAAACTGGCTTCTCTGTGCTGGAGGATGACATATATGAGATTGATCAGCCACGGGAGTTTTTTCTCTATTGTTACTACGGGTTAGTTGTTTCAGACTTTCTGCTTAGAAGTTATTTCAGTTGTGTTGGTGTCGTTCCCTTGTTCCGTTCCTTGTTTAAATTTCTCTGTGACTTTTAAAAAAAAAAATTGGAATATTTTTTATGGCAATTCATTAAATCATGCTTTCCTATCAGTGTGTTTTCTAATTTTTATAGGAAAGAGGAACTTTACTCGCCTATGAATATTTGTATTTGCTTGTATAGTTATCTGGTGAAAGAATTAATTTTGTTCAAAAACCCATGGTATTGGTATACAATTATCTACGTCTGCCTTTCTTACCTTTGATATTGTTTAGTTCTCCAACCTAAAGACAAAGTTCTTAACAGCAATGTGAATCACAAGTGATGTATCAATTTAGAATGAGATTGAGTAATTCAATATTTTCTTAATTAAAAAAGTCACTGATATAATCTTTCTATCGCTTTCTGGATTTTTCTGGATTTGTGTCTTATACTTGTTGACATGTCTTATAATTTGAACATAATAACAG-GGGAATGGTTTGCATTGGACAAAAGCAGTTCCGCAAAGCATTGGAACTCTTGCACAATGTATGTTACTGTGTTCTCATTCCATGTTTCCTTTATTGGTATTTGGTTTTGTTATTCCCTATTTGCAAGTTACTATATATTATCTATATCTGTCCGTTTGTGCTGATTCTATCTGTTATGCTTCTAGGTTGTGACTGCACCTATGTCTACTCTAAATGCAATAGCAGTTGAAGCT</genome_strand>
        <mrna_strand>TTGATTGGGCGAGAGAGATGAATCTGAACATGAATTCAATGGAATCAGTGGTTGCTCAAATCCAAGGGCTATCGAGCAATTCATCAGACATAACTCAGCTTCACAACTTTCTCAAACAATCGGAAGAGCTACTCCATTCCGACTTCTCTCGCTTGCTTTCTTCTCTCGCTGAACTCGATCCTTCTATTCACTCCCTAGGTTTTCTCTATATTCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGCATGCATCTCATTCCCAGTTGCAAAGGAGCATGTTAGTGAACTGCTTGTTTCTGTCGCTAGATTTATCAATTCATGTTCTACAGAGCAAATCCAGTTGGCGCCCAATAAGT............................................................................................TCATTTCTGTTTGTAAAAAGTTCAAGGATCATGTTTTCGGACTGGAAACTCCGATTCGTGGTGTGGCTCCAATGCTGACTGCTATTCGTAAACTGCAATCCTCCCCTGAGCAATTAACAACATTGCATGCCGATTTTCTTCTTCTTTGTCTATTAGCAAAGTGCTACAAAACTGGCTTCTCTGTGCTGGAGGATGACATATATGAGATTGATCAGCCACGGGAGTTTTTTCTCTATTGTTACTACGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGAATGGTTTGCATTGGACAAAAGCAGTTCCGCAAAGCATTGGAACTCTTGCACAAT...............................................................................................................................GTTGTGACTGCACCTATGTCTACTCTAAATGCAATAGCAGTTGAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E213689" ref_strand="+" ref_description="SGN-E213689 [cLEC-76-J3]">
      <seq>tgaaactcataagtgtgttgattgggcgagagagatgaatctgaacatgaattcaatggaatcagtggttgctcaaatccaagggctatcgagcaattcatcagacataactcagcttcacaactttctcaaacaatcggaagagctactccattccgacttctctcgcttgctttcttctctcgctgaactcgatccttctattcactccctaggttttctctatattctggaggcatgcatctcattcccagttgcaaaggagcatgttagtgaactgcttgtttctgtcgctagatttatcaattcatgttctacagagcaaatccagttggcgcccaataagttcatttctgtttgtaaaaagttcaaggatcatgttttcggactggaaactccgattcgtggtgtggctccaatgctgactgctattcgtaaactgcaatcctcccctgagcaattaacaacattgcatgccgattttcttcttctttgtctattagcaaagtgctacaaaactggcttctctgtgctggaggatgacatatatgagattgatcagccacgggagttttttctctattgttactacgggggaatggtttgcattggacaaagcagttccgcaaagcattggaactcttgcacaatggtgtgactgcacctatgtctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="35899" stop="33399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35599" g_stop="35369" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35368" i_stop="34871" i_length="498">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34870" g_stop="34755" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="347" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34754" i_stop="34663" i_length="92">
            <donor d_prob="0.587" d_score="1.00"/>
            <acceptor a_prob="0.805" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34662" g_stop="34416" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="594" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34415" i_stop="33907" i_length="509">
            <donor d_prob="0.771" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33906" g_stop="33849" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="651" r_length="57" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33848" i_stop="33722" i_length="127">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33721" g_stop="33699" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="652" r_stop="674" r_length="23" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E213689" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35599" e_stop="35369"/>
          <exon e_start="34870" e_stop="34755"/>
          <exon e_start="34662" e_stop="34416"/>
          <exon e_start="33906" e_stop="33849"/>
          <exon e_start="33721" e_stop="33699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAACTCATAAGTGTGTTGATTGGGCGAGAGAGATGAATCTGAACATGAATTCAATGGAATCAGTGGTTGCTCAAATCCAAGGGCTATCGAGCAATTCATCAGACATAACTCAGCTTCACAACTTTCTCAAACAATCGGAAGAGCTACTCCATTCCGACTTCTCTCGCTTGCTTTCTTCTCTCGCTGAACTCGATCCTTCTATTCACTCCCTAGGTTTTCTCTATATTCTGTAAGTTCCTTTTCATCCTCATCTCTTATTCTTATAACCTAAACCTAGGGTTTCTATTCTGAAGATTATTATTTGTTTAAATTAGCCATTGTTAGGTTATATATATAGATATATTGATTAAAACACCCTGGGCTGTGGCTTAGTCATCGTGGGCTATGGACGATGAGGTTTCATGTTAAAATCCCAATGCAGGTGTTTTTTTCCCATCTGCCCTAACTTTGTTGGACACCTGGTATTGGTACGCGTGGAATTAGCTTGGTGGACACCACGGTGATTATGAAAAAAGAAAAGCTAATTGACAAAGAGGATTGTTATGGTCAACACCAATACATGTAGGATTGAGGCATAGTTGATTGATTGATTACATAATCTATAAAAATAATGCAGAATTGAACCATCCACTGAATTAAAGACCAGTATTTGTGTAACAAGTGCGCGTTGTCTTTTGTACTCTGTCTAGTGTGTATTAATCATATAATTGTGTTTGTTAACTAACAGGGAGGCATGCATCTCATTCCCAGTTGCAAAGGAGCATGTTAGTGAACTGCTTGTTTCTGTCGCTAGATTTATCAATTCATGTTCTACAGAGCAAATCCAGTTGGCGCCCAATAAGTGTAATTTTCTCTGGTTTCTGGAATAGCTTTTGTGAATATTCTTGTTTCTGGTCTAACTTATATTGAGGCACGTCTTCAATTTGTGGTTGCAGTCATTTCTGTTTGTAAAAAGTTCAAGGATCATGTTTTCGGACTGGAAACTCCGATTCGTGGTGTGGCTCCAATGCTGACTGCTATTCGTAAACTGCAATCCTCCCCTGAGCAATTAACAACATTGCATGCCGATTTTCTTCTTCTTTGTCTATTAGCAAAGTGCTACAAAACTGGCTTCTCTGTGCTGGAGGATGACATATATGAGATTGATCAGCCACGGGAGTTTTTTCTCTATTGTTACTACGGGTTAGTTGTTTCAGACTTTCTGCTTAGAAGTTATTTCAGTTGTGTTGGTGTCGTTCCCTTGTTCCGTTCCTTGTTTAAATTTCTCTGTGACTTTTAAAAAAAAAAATTGGAATATTTTTTATGGCAATTCATTAAATCATGCTTTCCTATCAGTGTGTTTTCTAATTTTTATAGGAAAGAGGAACTTTACTCGCCTATGAATATTTGTATTTGCTTGTATAGTTATCTGGTGAAAGAATTAATTTTGTTCAAAAACCCATGGTATTGGTATACAATTATCTACGTCTGCCTTTCTTACCTTTGATATTGTTTAGTTCTCCAACCTAAAGACAAAGTTCTTAACAGCAATGTGAATCACAAGTGATGTATCAATTTAGAATGAGATTGAGTAATTCAATATTTTCTTAATTAAAAAAGTCACTGATATAATCTTTCTATCGCTTTCTGGATTTTTCTGGATTTGTGTCTTATACTTGTTGACATGTCTTATAATTTGAACATAATAACAGGGGAATGGTTTGCATTGGACAAAAGCAGTTCCGCAAAGCATTGGAACTCTTGCACAATGTATGTTACTGTGTTCTCATTCCATGTTTCCTTTATTGGTATTTGGTTTTGTTATTCCCTATTTGCAAGTTACTATATATTATCTATATCTGTCCGTTTGTGCTGATTCTATCTGTTATGCTTCTAGGTTGTGACTGCACCTATGTCTAC</genome_strand>
        <mrna_strand>TGAAACTCATAAGTGTGTTGATTGGGCGAGAGAGATGAATCTGAACATGAATTCAATGGAATCAGTGGTTGCTCAAATCCAAGGGCTATCGAGCAATTCATCAGACATAACTCAGCTTCACAACTTTCTCAAACAATCGGAAGAGCTACTCCATTCCGACTTCTCTCGCTTGCTTTCTTCTCTCGCTGAACTCGATCCTTCTATTCACTCCCTAGGTTTTCTCTATATTCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGCATGCATCTCATTCCCAGTTGCAAAGGAGCATGTTAGTGAACTGCTTGTTTCTGTCGCTAGATTTATCAATTCATGTTCTACAGAGCAAATCCAGTTGGCGCCCAATAAGT............................................................................................TCATTTCTGTTTGTAAAAAGTTCAAGGATCATGTTTTCGGACTGGAAACTCCGATTCGTGGTGTGGCTCCAATGCTGACTGCTATTCGTAAACTGCAATCCTCCCCTGAGCAATTAACAACATTGCATGCCGATTTTCTTCTTCTTTGTCTATTAGCAAAGTGCTACAAAACTGGCTTCTCTGTGCTGGAGGATGACATATATGAGATTGATCAGCCACGGGAGTTTTTTCTCTATTGTTACTACGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAATGGTTTGCATTGGAC-AAAGCAGTTCCGCAAAGCATTGGAACTCTTGCACAAT...............................................................................................................................GGTGTGACTGCACCTATGTCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E273079" ref_strand="+" ref_description="SGN-E273079 [cLEM-24-C3]">
      <seq>ataagtgtgttgattgggcgagagagatgaatctgaacatgaattcaatggaatcagtggttgctcaaatccaagggctatcgagcaattcatcagacataactcagcttcacaactttctcaaacaatcggaagagctactccattccgacttctctcgcttgctttcttctctcgctgaactcgatccttctattcactccctaggttttctctatattctggaggcatgcatctcattcccagttgcaaaggagcatgttagtgaactgcttgtttctgtcgctagatttatcaattcatgttctacagagcaaatccagttggcgcccaataagttcatttctgtttgtaaaaagttcaaggatcatgttttcggactggaaactccgattcgtggtgtggctccaatgctgactgctattcgtaaactgcaatcctcccctgagcaattaacaacattgcatgccgattttcttcttctttgtctattagcaaagtgctacaaaactggcttctctgtgctggaggatgacatatatgagattgatcagccacgggagttttttctcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="35891" stop="34128"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35591" g_stop="35369" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35368" i_stop="34871" i_length="498">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34870" g_stop="34755" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="339" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34754" i_stop="34663" i_length="92">
            <donor d_prob="0.587" d_score="1.00"/>
            <acceptor a_prob="0.805" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34662" g_stop="34428" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="574" r_length="235" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E273079" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35591" e_stop="35369"/>
          <exon e_start="34870" e_stop="34755"/>
          <exon e_start="34662" e_stop="34428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAGTGTGTTGATTGGGCGAGAGAGATGAATCTGAACATGAATTCAATGGAATCAGTGGTTGCTCAAATCCAAGGGCTATCGAGCAATTCATCAGACATAACTCAGCTTCACAACTTTCTCAAACAATCGGAAGAGCTACTCCATTCCGACTTCTCTCGCTTGCTTTCTTCTCTCGCTGAACTCGATCCTTCTATTCACTCCCTAGGTTTTCTCTATATTCTGTAAGTTCCTTTTCATCCTCATCTCTTATTCTTATAACCTAAACCTAGGGTTTCTATTCTGAAGATTATTATTTGTTTAAATTAGCCATTGTTAGGTTATATATATAGATATATTGATTAAAACACCCTGGGCTGTGGCTTAGTCATCGTGGGCTATGGACGATGAGGTTTCATGTTAAAATCCCAATGCAGGTGTTTTTTTCCCATCTGCCCTAACTTTGTTGGACACCTGGTATTGGTACGCGTGGAATTAGCTTGGTGGACACCACGGTGATTATGAAAAAAGAAAAGCTAATTGACAAAGAGGATTGTTATGGTCAACACCAATACATGTAGGATTGAGGCATAGTTGATTGATTGATTACATAATCTATAAAAATAATGCAGAATTGAACCATCCACTGAATTAAAGACCAGTATTTGTGTAACAAGTGCGCGTTGTCTTTTGTACTCTGTCTAGTGTGTATTAATCATATAATTGTGTTTGTTAACTAACAGGGAGGCATGCATCTCATTCCCAGTTGCAAAGGAGCATGTTAGTGAACTGCTTGTTTCTGTCGCTAGATTTATCAATTCATGTTCTACAGAGCAAATCCAGTTGGCGCCCAATAAGTGTAATTTTCTCTGGTTTCTGGAATAGCTTTTGTGAATATTCTTGTTTCTGGTCTAACTTATATTGAGGCACGTCTTCAATTTGTGGTTGCAGTCATTTCTGTTTGTAAAAAGTTCAAGGATCATGTTTTCGGACTGGAAACTCCGATTCGTGGTGTGGCTCCAATGCTGACTGCTATTCGTAAACTGCAATCCTCCCCTGAGCAATTAACAACATTGCATGCCGATTTTCTTCTTCTTTGTCTATTAGCAAAGTGCTACAAAACTGGCTTCTCTGTGCTGGAGGATGACATATATGAGATTGATCAGCCACGGGAGTTTTTTCTCTA</genome_strand>
        <mrna_strand>ATAAGTGTGTTGATTGGGCGAGAGAGATGAATCTGAACATGAATTCAATGGAATCAGTGGTTGCTCAAATCCAAGGGCTATCGAGCAATTCATCAGACATAACTCAGCTTCACAACTTTCTCAAACAATCGGAAGAGCTACTCCATTCCGACTTCTCTCGCTTGCTTTCTTCTCTCGCTGAACTCGATCCTTCTATTCACTCCCTAGGTTTTCTCTATATTCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGCATGCATCTCATTCCCAGTTGCAAAGGAGCATGTTAGTGAACTGCTTGTTTCTGTCGCTAGATTTATCAATTCATGTTCTACAGAGCAAATCCAGTTGGCGCCCAATAAGT............................................................................................TCATTTCTGTTTGTAAAAAGTTCAAGGATCATGTTTTCGGACTGGAAACTCCGATTCGTGGTGTGGCTCCAATGCTGACTGCTATTCGTAAACTGCAATCCTCCCCTGAGCAATTAACAACATTGCATGCCGATTTTCTTCTTCTTTGTCTATTAGCAAAGTGCTACAAAACTGGCTTCTCTGTGCTGGAGGATGACATATATGAGATTGATCAGCCACGGGAGTTTTTTCTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E266696" ref_strand="+" ref_description="SGN-E266696 [cLEI-5-D8]">
      <seq>gtctcttagacgtgaatctgctgaaactcataagtgtgttgattgggcgagagagatgaatctgaacatgaattcaatggaatcagtggttgctcaaatccaagggctatcgagcaattcatcagacataactcagcttcacaactttctcaaacaatcggaagagctactccattccgacttctctcgcttgctttcttctctcgctgaactcgatccttctattcactccctaggttttctctatattctggaggcatgcatctcattcccagttgcaaaggagcatgttagtgaactgcttgtttctgtcgctagatttatcaattcatgttctacagagcaaatccagttggcgcccaataagttcatttctgtttgtaaaaagttcaaggatcatgttttcggactggaaactccgattcgtggtgtggctccaatgctgactgctattcgtaaactgcaatcctcccctgagcaattaacaacattgcatgccgattttcttcttctttgtctattagcaaagtgctacaaaactggcttctctgtgctggaagatgacatatatgagattgatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="35920" stop="34149"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35620" g_stop="35369" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35368" i_stop="34871" i_length="498">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34870" g_stop="34755" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="368" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34754" i_stop="34663" i_length="92">
            <donor d_prob="0.587" d_score="1.00"/>
            <acceptor a_prob="0.805" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34662" g_stop="34449" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="582" r_length="214" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E266696" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35620" e_stop="35369"/>
          <exon e_start="34870" e_stop="34755"/>
          <exon e_start="34662" e_stop="34449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTCTTAGACGTGAATCTGCTGAAACTCATAAGTGTGTTGATTGGGCGAGAGAGATGAATCTGAACATGAATTCAATGGAATCAGTGGTTGCTCAAATCCAAGGGCTATCGAGCAATTCATCAGACATAACTCAGCTTCACAACTTTCTCAAACAATCGGAAGAGCTACTCCATTCCGACTTCTCTCGCTTGCTTTCTTCTCTCGCTGAACTCGATCCTTCTATTCACTCCCTAGGTTTTCTCTATATTCTGTAAGTTCCTTTTCATCCTCATCTCTTATTCTTATAACCTAAACCTAGGGTTTCTATTCTGAAGATTATTATTTGTTTAAATTAGCCATTGTTAGGTTATATATATAGATATATTGATTAAAACACCCTGGGCTGTGGCTTAGTCATCGTGGGCTATGGACGATGAGGTTTCATGTTAAAATCCCAATGCAGGTGTTTTTTTCCCATCTGCCCTAACTTTGTTGGACACCTGGTATTGGTACGCGTGGAATTAGCTTGGTGGACACCACGGTGATTATGAAAAAAGAAAAGCTAATTGACAAAGAGGATTGTTATGGTCAACACCAATACATGTAGGATTGAGGCATAGTTGATTGATTGATTACATAATCTATAAAAATAATGCAGAATTGAACCATCCACTGAATTAAAGACCAGTATTTGTGTAACAAGTGCGCGTTGTCTTTTGTACTCTGTCTAGTGTGTATTAATCATATAATTGTGTTTGTTAACTAACAGGGAGGCATGCATCTCATTCCCAGTTGCAAAGGAGCATGTTAGTGAACTGCTTGTTTCTGTCGCTAGATTTATCAATTCATGTTCTACAGAGCAAATCCAGTTGGCGCCCAATAAGTGTAATTTTCTCTGGTTTCTGGAATAGCTTTTGTGAATATTCTTGTTTCTGGTCTAACTTATATTGAGGCACGTCTTCAATTTGTGGTTGCAGTCATTTCTGTTTGTAAAAAGTTCAAGGATCATGTTTTCGGACTGGAAACTCCGATTCGTGGTGTGGCTCCAATGCTGACTGCTATTCGTAAACTGCAATCCTCCCCTGAGCAATTAACAACATTGCATGCCGATTTTCTTCTTCTTTGTCTATTAGCAAAGTGCTACAAAACTGGCTTCTCTGTGCTGGAGGATGACATATATGAGATTGATCA</genome_strand>
        <mrna_strand>GTCTCTTAGACGTGAATCTGCTGAAACTCATAAGTGTGTTGATTGGGCGAGAGAGATGAATCTGAACATGAATTCAATGGAATCAGTGGTTGCTCAAATCCAAGGGCTATCGAGCAATTCATCAGACATAACTCAGCTTCACAACTTTCTCAAACAATCGGAAGAGCTACTCCATTCCGACTTCTCTCGCTTGCTTTCTTCTCTCGCTGAACTCGATCCTTCTATTCACTCCCTAGGTTTTCTCTATATTCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGCATGCATCTCATTCCCAGTTGCAAAGGAGCATGTTAGTGAACTGCTTGTTTCTGTCGCTAGATTTATCAATTCATGTTCTACAGAGCAAATCCAGTTGGCGCCCAATAAGT............................................................................................TCATTTCTGTTTGTAAAAAGTTCAAGGATCATGTTTTCGGACTGGAAACTCCGATTCGTGGTGTGGCTCCAATGCTGACTGCTATTCGTAAACTGCAATCCTCCCCTGAGCAATTAACAACATTGCATGCCGATTTTCTTCTTCTTTGTCTATTAGCAAAGTGCTACAAAACTGGCTTCTCTGTGCTGGAAGATGACATATATGAGATTGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E212136" ref_strand="+" ref_description="SGN-E212136 [cLEC-75-L11]">
      <seq>tgaaactcataagtgtgttgattgggcgagagagatgaatctgaacatgaattcaatggaatcagtggttgctcaaatccaagggctatcgagcaattcatcagacataactcagcttcacaactttctcaaacaatcggaagagctactccattccgacttctctcgcttgctttcttctctcgctgaactcgatccttctattcactccctaggttttctctatattctggaggcatgcatctcattcccagttgcaaaggagcatgttagtgaactgcttgtttctgtcgctagatttatcaattcatgttctacagagcaaatccagttggcgcccaataagttcatttctgtttgtaaaaagttcaaggatcatgttttcggactggaaactccgattcgtggtgtggctccaatgctgactgctattcgtaaactgcaatcctcccctgagcaattaacaacattgcatgccgattttcttcttncttgtctattagcaaagtgctacnaaactggcttctctgtgctggaggatgacatatatgagattgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="35899" stop="34150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35599" g_stop="35369" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35368" i_stop="34871" i_length="498">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34870" g_stop="34755" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="347" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34754" i_stop="34663" i_length="92">
            <donor d_prob="0.587" d_score="1.00"/>
            <acceptor a_prob="0.805" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34662" g_stop="34450" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="560" r_length="213" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E212136" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35599" e_stop="35369"/>
          <exon e_start="34870" e_stop="34755"/>
          <exon e_start="34662" e_stop="34450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAACTCATAAGTGTGTTGATTGGGCGAGAGAGATGAATCTGAACATGAATTCAATGGAATCAGTGGTTGCTCAAATCCAAGGGCTATCGAGCAATTCATCAGACATAACTCAGCTTCACAACTTTCTCAAACAATCGGAAGAGCTACTCCATTCCGACTTCTCTCGCTTGCTTTCTTCTCTCGCTGAACTCGATCCTTCTATTCACTCCCTAGGTTTTCTCTATATTCTGTAAGTTCCTTTTCATCCTCATCTCTTATTCTTATAACCTAAACCTAGGGTTTCTATTCTGAAGATTATTATTTGTTTAAATTAGCCATTGTTAGGTTATATATATAGATATATTGATTAAAACACCCTGGGCTGTGGCTTAGTCATCGTGGGCTATGGACGATGAGGTTTCATGTTAAAATCCCAATGCAGGTGTTTTTTTCCCATCTGCCCTAACTTTGTTGGACACCTGGTATTGGTACGCGTGGAATTAGCTTGGTGGACACCACGGTGATTATGAAAAAAGAAAAGCTAATTGACAAAGAGGATTGTTATGGTCAACACCAATACATGTAGGATTGAGGCATAGTTGATTGATTGATTACATAATCTATAAAAATAATGCAGAATTGAACCATCCACTGAATTAAAGACCAGTATTTGTGTAACAAGTGCGCGTTGTCTTTTGTACTCTGTCTAGTGTGTATTAATCATATAATTGTGTTTGTTAACTAACAGGGAGGCATGCATCTCATTCCCAGTTGCAAAGGAGCATGTTAGTGAACTGCTTGTTTCTGTCGCTAGATTTATCAATTCATGTTCTACAGAGCAAATCCAGTTGGCGCCCAATAAGTGTAATTTTCTCTGGTTTCTGGAATAGCTTTTGTGAATATTCTTGTTTCTGGTCTAACTTATATTGAGGCACGTCTTCAATTTGTGGTTGCAGTCATTTCTGTTTGTAAAAAGTTCAAGGATCATGTTTTCGGACTGGAAACTCCGATTCGTGGTGTGGCTCCAATGCTGACTGCTATTCGTAAACTGCAATCCTCCCCTGAGCAATTAACAACATTGCATGCCGATTTTCTTCTTCTTTGTCTATTAGCAAAGTGCTACAAAACTGGCTTCTCTGTGCTGGAGGATGACATATATGAGATTGATC</genome_strand>
        <mrna_strand>TGAAACTCATAAGTGTGTTGATTGGGCGAGAGAGATGAATCTGAACATGAATTCAATGGAATCAGTGGTTGCTCAAATCCAAGGGCTATCGAGCAATTCATCAGACATAACTCAGCTTCACAACTTTCTCAAACAATCGGAAGAGCTACTCCATTCCGACTTCTCTCGCTTGCTTTCTTCTCTCGCTGAACTCGATCCTTCTATTCACTCCCTAGGTTTTCTCTATATTCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGCATGCATCTCATTCCCAGTTGCAAAGGAGCATGTTAGTGAACTGCTTGTTTCTGTCGCTAGATTTATCAATTCATGTTCTACAGAGCAAATCCAGTTGGCGCCCAATAAGT............................................................................................TCATTTCTGTTTGTAAAAAGTTCAAGGATCATGTTTTCGGACTGGAAACTCCGATTCGTGGTGTGGCTCCAATGCTGACTGCTATTCGTAAACTGCAATCCTCCCCTGAGCAATTAACAACATTGCATGCCGATTTTCTTCTTNCTTGTCTATTAGCAAAGTGCTACNAAACTGGCTTCTCTGTGCTGGAGGATGACATATATGAGATTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E315615" ref_strand="+" ref_description="SGN-E315615 [cTOA-22-F5]">
      <seq>gtctcttagacgtgaatctgctgaaactcataagtgtgttgattgggcgagagagatgaatctgaacatgaattcaatggaatcagtggttgctcaaatccaagggctatcgagcaattcatcagacataactcagcttcacaactttctcaaacaatcggaagagctactccattccgacttctctcgcttgctttcttctctcgctgaactcgatccttctattcactccctaggttttctctatattctggaggcatgcatctcattcccagttgcaaaggagcatgttagtgaactgcttgtttctgtcgctagatttatcaattctgttctacagagcaaatccagttggcgcccaataagttcatttctgtttgtaaaaagttcaaggatcatgttttcggactggaaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="35920" stop="34312"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35620" g_stop="35369" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35368" i_stop="34871" i_length="498">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34870" g_stop="34755" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="367" r_length="115" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34754" i_stop="34663" i_length="92">
            <donor d_prob="0.587" d_score="0.98"/>
            <acceptor a_prob="0.805" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34662" g_stop="34612" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="418" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E315615" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315615" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35620" e_stop="35369"/>
          <exon e_start="34870" e_stop="34755"/>
          <exon e_start="34662" e_stop="34612"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTCTTAGACGTGAATCTGCTGAAACTCATAAGTGTGTTGATTGGGCGAGAGAGATGAATCTGAACATGAATTCAATGGAATCAGTGGTTGCTCAAATCCAAGGGCTATCGAGCAATTCATCAGACATAACTCAGCTTCACAACTTTCTCAAACAATCGGAAGAGCTACTCCATTCCGACTTCTCTCGCTTGCTTTCTTCTCTCGCTGAACTCGATCCTTCTATTCACTCCCTAGGTTTTCTCTATATTCTGTAAGTTCCTTTTCATCCTCATCTCTTATTCTTATAACCTAAACCTAGGGTTTCTATTCTGAAGATTATTATTTGTTTAAATTAGCCATTGTTAGGTTATATATATAGATATATTGATTAAAACACCCTGGGCTGTGGCTTAGTCATCGTGGGCTATGGACGATGAGGTTTCATGTTAAAATCCCAATGCAGGTGTTTTTTTCCCATCTGCCCTAACTTTGTTGGACACCTGGTATTGGTACGCGTGGAATTAGCTTGGTGGACACCACGGTGATTATGAAAAAAGAAAAGCTAATTGACAAAGAGGATTGTTATGGTCAACACCAATACATGTAGGATTGAGGCATAGTTGATTGATTGATTACATAATCTATAAAAATAATGCAGAATTGAACCATCCACTGAATTAAAGACCAGTATTTGTGTAACAAGTGCGCGTTGTCTTTTGTACTCTGTCTAGTGTGTATTAATCATATAATTGTGTTTGTTAACTAACAGGGAGGCATGCATCTCATTCCCAGTTGCAAAGGAGCATGTTAGTGAACTGCTTGTTTCTGTCGCTAGATTTATCAATTCATGTTCTACAGAGCAAATCCAGTTGGCGCCCAATAAGTGTAATTTTCTCTGGTTTCTGGAATAGCTTTTGTGAATATTCTTGTTTCTGGTCTAACTTATATTGAGGCACGTCTTCAATTTGTGGTTGCAGTCATTTCTGTTTGTAAAAAGTTCAAGGATCATGTTTTCGGACTGGAAACTC</genome_strand>
        <mrna_strand>GTCTCTTAGACGTGAATCTGCTGAAACTCATAAGTGTGTTGATTGGGCGAGAGAGATGAATCTGAACATGAATTCAATGGAATCAGTGGTTGCTCAAATCCAAGGGCTATCGAGCAATTCATCAGACATAACTCAGCTTCACAACTTTCTCAAACAATCGGAAGAGCTACTCCATTCCGACTTCTCTCGCTTGCTTTCTTCTCTCGCTGAACTCGATCCTTCTATTCACTCCCTAGGTTTTCTCTATATTCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGCATGCATCTCATTCCCAGTTGCAAAGGAGCATGTTAGTGAACTGCTTGTTTCTGTCGCTAGATTTATCAATTC-TGTTCTACAGAGCAAATCCAGTTGGCGCCCAATAAGT............................................................................................TCATTTCTGTTTGTAAAAAGTTCAAGGATCATGTTTTCGGACTGGAAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E312210" ref_strand="+" ref_description="SGN-E312210 [cTOA-5-C15]">
      <seq>tgaaatgaatttaatggacgaggagatcaattcatttgaaggggatacctcaggaaaatgtaaggaagtactgttttagtggtgcaatattatttcaattgagttgccattctcataagttgttgtcttggttgcaggcaaatattccctgagaacagggtatgatgaataagggatctcagtttcaattcttgcatccccttgtctgtggcatcttttggttatgactctcagaaatttgtgaaaattcatttcttctgtttttggcggtgatccaatttttggctttttgcatgcagaaaggtcgcaaaattcctgtttgaaaacttccttgctcggaaggggaaggaggaggtagaagttgtcaacttgtccttgcttatgaaggggaaaacaaagggagacagtgcaagggtgttctacgagatactggttctgaaatcaggaggctgtatagatgtgcggcaggatgatgcctacagtgacattcttttgcaaaaactcccaagactaaagcagacctttgaagctgagtcctgaatctatatatatatgttcacaaagagagctgtgttggtaaatagtagccagaggaaacaatcacatgacatatatgcttttatatatgtttggtagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="37868" stop="36099"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37568" g_stop="37547" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37546" i_stop="37372" i_length="175">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37371" g_stop="36962" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="432" r_length="410" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36961" i_stop="36605" i_length="357">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36604" g_stop="36399" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="638" r_length="206" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E312210" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37568" e_stop="37547"/>
          <exon e_start="37371" e_stop="36962"/>
          <exon e_start="36604" e_stop="36399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAATGAATTTAATGGACGAGGTATGACACGATTGACTAGTCTGATTGCTTACATAAGTAAAGGAAATTGCTTTCAGCTACTGAAGTGTATTGTGATGATTATTAACTTTTTTTGGAAATAAAAAAGTTCTATTGTCTGTATCTGTTATTGCAATGCTAATAAGTGCTAACTGCAACAAATGCGCTCTTTCCTCAGGAGATCAATTCATTTGAAGGGGATACCTCAGGAAAATGTAAGGAAGTACTGTTTTAGTGGTGCAATATTATTTCAATTGAGTTGCCATTCTCATAAGTTGTTGTCTTGGTTGCAGGCAAATATTCCCTGAGAACAGGGTATGATGAATAAGGGATCTCAGTTTCAATTCTTGCATCCCCTTGTCTGTGGCATCTTTTGGTTATGACTCTCAGAAATTTGTGAAAATTCATTTCTTCTGTTTTTGGCGGTGATCCAATTTTTGGCTTTTTGCATGCAGAAAGGTCGCAAAATTCCTGTTTGAAAACTTCCTTGCTCGGAAGGGGAAGGAGGAGGTAGAAGTTGTCAACTTGTCCTTGCTTATGAAGGGGAAAACAAAGGGAGACAGTGCAAGGGTGTTCTACGAGATACTGGTATTGTTTTTAGGTTCCTTTCATCTTTCTGGTAATTTTAGGTCTGCCAAATTGAACTTGTGGATGAACGGAATTATTTGATACATATTTTGAGTAGCGCTTTCAGCAGGAGTTTTTGTCCCTTGTTTCCCTTCTGTCAAGCATCCAGGATGTGCTCTAGATGGTGGTGCTTAAAAAGGAATTTCTTTGGTTCTATTGTTGTTAAATGCCCCCGTGTTTCTTGGCCTATAAACATTGGTTATAATGGACGGACACATGAATTTATTTTACGCATTTGTCTCTGGTTTTACGTAAATATAATCCCAACGTAAGATATATACATTGTGAATTATTTTACAATGCTTATTTTCCACGCAGGTTCTGAAATCAGGAGGCTGTATAGATGTGCGGCAGGATGATGCCTACAGTGACATTCTTTTGCAAAAACTCCCAAGACTAAAGCAGACCTTTGAAGCTGAGTCCTGAATCTATATATATATGTTCACAAAGAGAGCTGTGTTGGTAAATAGTAGCCAGAGGAAACAATCACATGACATATATGCTTTTATATATGTTTGGTAGTA</genome_strand>
        <mrna_strand>TGAAATGAATTTAATGGACGAG...............................................................................................................................................................................GAGATCAATTCATTTGAAGGGGATACCTCAGGAAAATGTAAGGAAGTACTGTTTTAGTGGTGCAATATTATTTCAATTGAGTTGCCATTCTCATAAGTTGTTGTCTTGGTTGCAGGCAAATATTCCCTGAGAACAGGGTATGATGAATAAGGGATCTCAGTTTCAATTCTTGCATCCCCTTGTCTGTGGCATCTTTTGGTTATGACTCTCAGAAATTTGTGAAAATTCATTTCTTCTGTTTTTGGCGGTGATCCAATTTTTGGCTTTTTGCATGCAGAAAGGTCGCAAAATTCCTGTTTGAAAACTTCCTTGCTCGGAAGGGGAAGGAGGAGGTAGAAGTTGTCAACTTGTCCTTGCTTATGAAGGGGAAAACAAAGGGAGACAGTGCAAGGGTGTTCTACGAGATACTG.....................................................................................................................................................................................................................................................................................................................................................................GTTCTGAAATCAGGAGGCTGTATAGATGTGCGGCAGGATGATGCCTACAGTGACATTCTTTTGCAAAAACTCCCAAGACTAAAGCAGACCTTTGAAGCTGAGTCCTGAATCTATATATATATGTTCACAAAGAGAGCTGTGTTGGTAAATAGTAGCCAGAGGAAACAATCACATGACATATATGCTTTTATATATGTTTGGTAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E705243" ref_strand="+" ref_description="SGN-E705243 [FA26CC06]">
      <seq>cagatcagagtcttttatcgaacaccttgtctctcggctgcattctgttcataagtctcgctacctcgtaggacgagaactaacaactcttgagattagggatgctctcatcccataccttgaggccctccacgaggaatatggaagcattttggtggacgttgtggagagctttccaaacccaccagttgtggagaaaatagaagaaactgttgaaaaagtacctattcctgtcacaccagcttcacctcctagtgctgttctcgactccaagaaactgaaggctctggcacgagtgactgatattggacccactggaaagcttcccccacatattttataccttgttgaactgggcatggacattgaaaggattagagtaatcacacgaaagtttcctgcttttgcttactatagtcttgagggaaaaatcaaaccagtagttgagttcctccttgatcttggagtgccaagatcacagatcccaacaattctcagcaaaaggcctcaactatgtggaattagtctctcagataatttaattccaacaatgacatttttggaagaactgggcgttgataaagaacaatgggctaaagtaatctaccgttttcctgcacttctcacttacagtagacctaaattgaaagcaacagtggactttctttatgaaatgggtctatctgctgagtgtgtgagcaaggttctaaccagatgtccaaacatcataagttatagcgtggaggacaagctaaggcctgcaactgagtacttccggtcaatgggggttgatgttggagttcttctctaccgatgtcctcaaacctttggtcttagcattgaagctaacattaagcctgccaccgagttcttccaggataagggggtcagtatgacggaaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="48088" stop="46436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47788" g_stop="47718" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47717" i_stop="47570" i_length="148">
            <donor d_prob="0.744" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47569" g_stop="46736" g_length="834"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="905" r_length="834" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E705243" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>905</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705243" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47788" e_stop="47718"/>
          <exon e_start="47569" e_stop="46736"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATCAGAGTCTTTTATCGAACACCTTGTCTCTCGGCTGCATTCTGTTCATAAGTCTCGCTACCTCGTAGGTCTGGTTTAAGCAGATTGATTTCCTGTTGTTTTCCCCTATTTATCTGCTTGTACATCTGTGAATTCGCAGAATGTGCATGAGCATATTCACTGTGCTGTTTTCTGTTTAACTTCATCTGTAAATTGTGAATTTCCTTTTATTTGCAGGACGAGAACTAACAACTCTTGAGATTAGGGATGCTCTCATCCCATACCTTGAGGCCCTCCACGAGGAATATGGAAGCATTTTGGTGGACGTTGTGGAGAGCTTTCCAAACCCACCAGTTGTGGAGAAAATAGAAGAAACTGTTGAAAAAGTACCTATTCCTGTCACACCAGCTTCACCTCCTAGTGCTGTTCTCGACTCCAAGAAACTGAAGGCTCTGGCACGAGTGACTGATATTGGACCCACTGGAAAGCTTCCCCCACATATTTTATACCTTGTTGAACTGGGCATGGACATTGAAAGGATTAGAGTAATCACACGAAAGTTTCCTGCTTTTGCTTACTATAGTCTTGAGGGAAAAATCAAACCAGTAGTTGAGTTCCTCCTTGATCTTGGAGTGCCAAGATCACAGATCCCAACAATTCTCAGCAAAAGGCCTCAACTATGTGGAATTAGTCTCTCAGATAATTTAATTCCAACAATGACATTTTTGGAAGAACTGGGCGTTGATAAAGAACAATGGGCTAAAGTAATCTACCGTTTTCCTGCACTTCTCACTTACAGTAGACCTAAATTGAAAGCAACAGTGGACTTTCTTTATGAAATGGGTCTATCTGCTGAGTGTGTGAGCAAGGTTCTAACCAGATGTCCAAACATCATAAGTTATAGCGTGGAGGACAAGCTAAGGCCTGCAACTGAGTACTTCCGGTCAATGGGGGTTGATGTTGGAGTTCTTCTCTACCGATGTCCTCAAACCTTTGGTCTTAGCATTGAGGCTAACATTAAGCCTGCCACCGAGTTCTTCAAGGATAAGGGGTTCAGTATGACGGAAATTG</genome_strand>
        <mrna_strand>CAGATCAGAGTCTTTTATCGAACACCTTGTCTCTCGGCTGCATTCTGTTCATAAGTCTCGCTACCTCGTAG....................................................................................................................................................GACGAGAACTAACAACTCTTGAGATTAGGGATGCTCTCATCCCATACCTTGAGGCCCTCCACGAGGAATATGGAAGCATTTTGGTGGACGTTGTGGAGAGCTTTCCAAACCCACCAGTTGTGGAGAAAATAGAAGAAACTGTTGAAAAAGTACCTATTCCTGTCACACCAGCTTCACCTCCTAGTGCTGTTCTCGACTCCAAGAAACTGAAGGCTCTGGCACGAGTGACTGATATTGGACCCACTGGAAAGCTTCCCCCACATATTTTATACCTTGTTGAACTGGGCATGGACATTGAAAGGATTAGAGTAATCACACGAAAGTTTCCTGCTTTTGCTTACTATAGTCTTGAGGGAAAAATCAAACCAGTAGTTGAGTTCCTCCTTGATCTTGGAGTGCCAAGATCACAGATCCCAACAATTCTCAGCAAAAGGCCTCAACTATGTGGAATTAGTCTCTCAGATAATTTAATTCCAACAATGACATTTTTGGAAGAACTGGGCGTTGATAAAGAACAATGGGCTAAAGTAATCTACCGTTTTCCTGCACTTCTCACTTACAGTAGACCTAAATTGAAAGCAACAGTGGACTTTCTTTATGAAATGGGTCTATCTGCTGAGTGTGTGAGCAAGGTTCTAACCAGATGTCCAAACATCATAAGTTATAGCGTGGAGGACAAGCTAAGGCCTGCAACTGAGTACTTCCGGTCAATGGGGGTTGATGTTGGAGTTCTTCTCTACCGATGTCCTCAAACCTTTGGTCTTAGCATTGAAGCTAACATTAAGCCTGCCACCGAGTTCTTCCAGGATAAGGGGGTCAGTATGACGGAAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E545268" ref_strand="+" ref_description="SGN-E545268 [TUS-68-A12](-)">
      <seq>aatgaggcagaccgggtgatactggatgaacttgctaggaggttggtcttaaccggtgctcaggtgaagacgcacattaacggcggtaaaggatctccacatctgaaagttcttacaatggttgaactcgctggaatattcggttgcggaaaatcaagcaggcccaatgtgctccgccaagaggccgaggtgggaccaagtttgaggtttcaaaacatgaggctcagaaaaggggacgctgagcttcctggcctttttcgggtgatcacatccaagctcttggaagtgccctttgtgtgtgagggcggttctgagatggcagcgctttgcgtaatggggataaacctcgagacaagagaagctatgtttcgctagtagagatattgatgacaagccttaagatgtatagttattagctttaccacttcttccatttcgtcataggcttagatgaattcttacttatgtagagtatctcttagtatctgtagtacttcgtctagtattacttcgtttgaaaatgtcatttttaacgagaagaagaaaggttgagaagaccacagcttcatcatacatgagttgggttttacttttctttctttcccgcctccaaaggaccaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="51228" stop="50019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50928" g_stop="50318" g_length="611"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="611" r_length="611" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="620" polyA_stop="630"/>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E545268" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E545268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50928" e_stop="50318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGAGGCAGAGCGGGTGATACTGGATGAACTTGCTAGGAAGTTGGTCTTAACCGGTGCTCAGGTGAAGAAGCACATTAAGGGCGGTAAAGGATCTCCACATATGAAAGTTCTTACAATGGTTGAAGCTGCTGGAATATTGCGTTGGGGAAAATCAAGCAGGCGTAATGTGGTATGCCAAGAGGCAGAAGTGGGACCAAGTTTGAGGTTTCAAAAGATGAGGCTAAGGAAAGGGGACGCTGAGCTTCCTGGAATTTTTAGGGTGATCACATCCAAGAACAAGGAAGTGCACTTTGTGTGTGAGGGCGGTTCTGAGATGGCAGCGCTTTGGGTAAGGGGGATAAAACTTGTGACAAGAGAAGCTATGTTTCGCTAGTAGAGATATTGAGGACAAGAGTTAAGATGTATAGTTATTAGCTTTACTACTTCTTCCATTTTGTCATATGCTTAGATGAATTCTTACTTATGTAGAGTATCTCTTAGTATCTGTAGTACTTCGTCTTGTAGTACTTCGTTTGTAAATGTCATTTTTAACGAGAAGAAGAAAGGTTGAGAAGACCACAGCTTCATCATACATGAGTTGGGTTTTACTTTTCTTTCTTTCACGCTTCA</genome_strand>
        <mrna_strand>AATGAGGCAGACCGGGTGATACTGGATGAACTTGCTAGGAGGTTGGTCTTAACCGGTGCTCAGGTGAAGACGCACATTAACGGCGGTAAAGGATCTCCACATCTGAAAGTTCTTACAATGGTTGAACTCGCTGGAATATTCGGTTGCGGAAAATCAAGCAGGCCCAATGTGCTCCGCCAAGAGGCCGAGGTGGGACCAAGTTTGAGGTTTCAAAACATGAGGCTCAGAAAAGGGGACGCTGAGCTTCCTGGCCTTTTTCGGGTGATCACATCCAAGCTCTTGGAAGTGCCCTTTGTGTGTGAGGGCGGTTCTGAGATGGCAGCGCTTTGCGTAATGGGGATAAACCTCGAGACAAGAGAAGCTATGTTTCGCTAGTAGAGATATTGATGACAAGCCTTAAGATGTATAGTTATTAGCTTTACCACTTCTTCCATTTCGTCATAGGCTTAGATGAATTCTTACTTATGTAGAGTATCTCTTAGTATCTGTAGTACTTCGTCTAGTATTACTTCGTTTGAAAATGTCATTTTTAACGAGAAGAAGAAAGGTTGAGAAGACCACAGCTTCATCATACATGAGTTGGGTTTTACTTTTCTTTCTTTCCCGCCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E549179" ref_strand="+" ref_description="SGN-E549179 [TUS-68-A12]">
      <seq>tgctcatggaatcggacctgattcgacctcgtattgctatacatgctttcttcactgcatgctgccggggatatgtaaatgtggtggacactctctttaagcttggagtgactgtgaatgctacaaatcgtgtgttgctccagtcaagtaaaccttctctgcatacaaatgtggactgcacagcacttgtggctgcgattgtttgtaggcaagtctctgtagttcgtctgttgcttgaggctggtgcaaaaactgatggaccagtccaacttggagcctggtcctgggatgcagcttcacgtgaagaatttcgagtaggtgctgggttagcagattcctatgccattacttggtgtgctgcggagtattttgaagctagtggcgctattttgcaaatgctcctccagcggcttgattcctgcactactctcagtggaagaactcttctccaccatgctattctttgtggtaatgcatgagcagtttcggtgcttttgaaatgcggtgcttatgtggaatctccagttataaccacccggaacattgagtttcgtcctatacacatggcagcccgacttgggttctcaagcgttcttagatgattgattgaatttggctgtgatctggatgcaagaacggacacaggagatacagctttaatgatctctgcaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="53207" stop="51349"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52907" g_stop="52807" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52806" i_stop="52421" i_length="386">
            <donor d_prob="0.974" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52420" g_stop="52283" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="239" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52282" i_stop="52084" i_length="199">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.353" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52083" g_stop="51649" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="674" r_length="435" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E549179" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549179" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52907" e_stop="52807"/>
          <exon e_start="52420" e_stop="52283"/>
          <exon e_start="52083" e_stop="51649"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTCATGGAATCGGACCTGATTCGACCTCGTATTGCTATACATGCTTTCTTCACTGCATGCTGCCGGGGATATGTAAATGTGGTGGACACTCTCCTTAAGGTGAAAAATTAAGCTAGCCATTTAAGATACTATTTCTCTGCAGGATATCACTGCTAACTTTAGCTCAGCTGTTTCCAACAAAAATTAAACCTATAAAACAATTACGGTTAGAGAAAAGCTAGAGTCACATTTACATTACTCTCCTTACTCCTTTTATGCAATTTTGCCTTTAATTTGCAAATTCAAGTGGGTTCTTTTATTTTTTGCTGCTCGATATACCTATAGGTGGGAACAATATTGATTTATACATACTCTTTTTAGCGTTTGCCATTTTACTTTGCCTTTATTGCTCGTTGTGTGTTTATCTTGTATCCTTTTTGGAGCAACCATGGCCAAAGTGTGAATTTTTATTTACATCTTGATAATCGCTGCTTTCTTGGTGGCAGCTTGGAGTGACTGTGAATGCTACAAATCGTGTGTTGCTCCAGTCAAGTAAACCTTCTCTGCATACAAATGTGGACTGCACAGCACTTGTGGCTGCGATTGTTTGTAGGCAAGTCTCTGTAGTTCGTCTGTTGCTTGAGGTAATAAACTCAAAATGGATCACTAGTTATCAATTAGATGCTTCTCAAGTGAATCACTTGACTTCTTTCAATTACACGCTCAGCAAATAATGAAGCATCCTTCTTGAATTTATCCTTGTTAAGCTGAATATTGAGCCATTTTAGTTTTAATCAACAATTGACTGATTAGGCTTTCCCCTTACCTTTTTGGACTCTCAAGGCTGGTGCAAAAACTGATGGACCAGTCCAACTTGGAGCCTGGTCCTGGGATGCAGCTTCAGGTGAAGAATTTCGAGTAGGTGCTGGGTTAGCAGATTCCTATGCCATTACTTGGTGTGCTGTGGAGTATTTTGAAGCAAGTGGCGCTATTTTGCAAATGCTCCTCCAGCGGCTTGATTCCTGCACAACTCTCAGTGGAAGAACTCTTCTCCACCATGCTATTCTTTGTGGTAATGCAGGAGCAGTTTCGGTGCTTTTGAAATGCGGTGCTTATGTGGAATCTCCAGTTATAACCACCCGGAACATTGAGTTTCGTCCTATACACATGGCAGCCCGACTTGGGTTCTCAAGCGTTCTTAAATGTTTGATTGAATTTGGCTGTGATCTGGATGCAAGAACGGACACAGGAGATACAGCTTTAATGATCTCTGCAAGA</genome_strand>
        <mrna_strand>TGCTCATGGAATCGGACCTGATTCGACCTCGTATTGCTATACATGCTTTCTTCACTGCATGCTGCCGGGGATATGTAAATGTGGTGGACACTCTCTTTAAG..................................................................................................................................................................................................................................................................................................................................................................................................CTTGGAGTGACTGTGAATGCTACAAATCGTGTGTTGCTCCAGTCAAGTAAACCTTCTCTGCATACAAATGTGGACTGCACAGCACTTGTGGCTGCGATTGTTTGTAGGCAAGTCTCTGTAGTTCGTCTGTTGCTTGAG.......................................................................................................................................................................................................GCTGGTGCAAAAACTGATGGACCAGTCCAACTTGGAGCCTGGTCCTGGGATGCAGCTTCACGTGAAGAATTTCGAGTAGGTGCTGGGTTAGCAGATTCCTATGCCATTACTTGGTGTGCTGCGGAGTATTTTGAAGCTAGTGGCGCTATTTTGCAAATGCTCCTCCAGCGGCTTGATTCCTGCACTACTCTCAGTGGAAGAACTCTTCTCCACCATGCTATTCTTTGTGGTAATGCATGAGCAGTTTCGGTGCTTTTGAAATGCGGTGCTTATGTGGAATCTCCAGTTATAACCACCCGGAACATTGAGTTTCGTCCTATACACATGGCAGCCCGACTTGGGTTCTCAAGCGTTCTTAGATGATTGATTGAATTTGGCTGTGATCTGGATGCAAGAACGGACACAGGAGATACAGCTTTAATGATCTCTGCAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E311600" ref_strand="+" ref_description="SGN-E311600 [cLEZ-9-E1]">
      <seq>gctcatggaatcggacctgattcgacctcgtattgctatacatgctttcttcactgcatgctgccggggatatgtaaatgtggtggacactctctttaagcttggagtgactgtgaatgctacaaatcgtgtgttgctccagtcaagtaaaccttctctgcatacaaatgtggactgcacagcacttgtggctgcgattgtttgtaggcaagtctctgtagttcgtctgttgcttgaggctggtgcaaaaactgatggaccagtccaacttggagcctggtcctgggatgcagcttcaggtgaagaatttcgagtaggtgctgggttagcagattcctatgccattacttggtgtgctgtggagtattttgaagcaagtggcgctattttgcaaatgctcctccagcggcttgattcctgcacaactctcagtggaagaactcttctccaccatgctattctttgtggtaatgcaggagcagtttcggtgcttttgaaatgcggtgcttatgtggaatctccagttataaccacccggaacattgagtttcgtcctatacacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="53206" stop="51458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52906" g_stop="52807" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52806" i_stop="52421" i_length="386">
            <donor d_prob="0.974" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52420" g_stop="52283" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="238" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52282" i_stop="52084" i_length="199">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.353" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52083" g_stop="51758" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="564" r_length="326" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E311600" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311600" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52906" e_stop="52807"/>
          <exon e_start="52420" e_stop="52283"/>
          <exon e_start="52083" e_stop="51758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCATGGAATCGGACCTGATTCGACCTCGTATTGCTATACATGCTTTCTTCACTGCATGCTGCCGGGGATATGTAAATGTGGTGGACACTCTCCTTAAGGTGAAAAATTAAGCTAGCCATTTAAGATACTATTTCTCTGCAGGATATCACTGCTAACTTTAGCTCAGCTGTTTCCAACAAAAATTAAACCTATAAAACAATTACGGTTAGAGAAAAGCTAGAGTCACATTTACATTACTCTCCTTACTCCTTTTATGCAATTTTGCCTTTAATTTGCAAATTCAAGTGGGTTCTTTTATTTTTTGCTGCTCGATATACCTATAGGTGGGAACAATATTGATTTATACATACTCTTTTTAGCGTTTGCCATTTTACTTTGCCTTTATTGCTCGTTGTGTGTTTATCTTGTATCCTTTTTGGAGCAACCATGGCCAAAGTGTGAATTTTTATTTACATCTTGATAATCGCTGCTTTCTTGGTGGCAGCTTGGAGTGACTGTGAATGCTACAAATCGTGTGTTGCTCCAGTCAAGTAAACCTTCTCTGCATACAAATGTGGACTGCACAGCACTTGTGGCTGCGATTGTTTGTAGGCAAGTCTCTGTAGTTCGTCTGTTGCTTGAGGTAATAAACTCAAAATGGATCACTAGTTATCAATTAGATGCTTCTCAAGTGAATCACTTGACTTCTTTCAATTACACGCTCAGCAAATAATGAAGCATCCTTCTTGAATTTATCCTTGTTAAGCTGAATATTGAGCCATTTTAGTTTTAATCAACAATTGACTGATTAGGCTTTCCCCTTACCTTTTTGGACTCTCAAGGCTGGTGCAAAAACTGATGGACCAGTCCAACTTGGAGCCTGGTCCTGGGATGCAGCTTCAGGTGAAGAATTTCGAGTAGGTGCTGGGTTAGCAGATTCCTATGCCATTACTTGGTGTGCTGTGGAGTATTTTGAAGCAAGTGGCGCTATTTTGCAAATGCTCCTCCAGCGGCTTGATTCCTGCACAACTCTCAGTGGAAGAACTCTTCTCCACCATGCTATTCTTTGTGGTAATGCAGGAGCAGTTTCGGTGCTTTTGAAATGCGGTGCTTATGTGGAATCTCCAGTTATAACCACCCGGAACATTGAGTTTCGTCCTATACACAT</genome_strand>
        <mrna_strand>GCTCATGGAATCGGACCTGATTCGACCTCGTATTGCTATACATGCTTTCTTCACTGCATGCTGCCGGGGATATGTAAATGTGGTGGACACTCTCTTTAAG..................................................................................................................................................................................................................................................................................................................................................................................................CTTGGAGTGACTGTGAATGCTACAAATCGTGTGTTGCTCCAGTCAAGTAAACCTTCTCTGCATACAAATGTGGACTGCACAGCACTTGTGGCTGCGATTGTTTGTAGGCAAGTCTCTGTAGTTCGTCTGTTGCTTGAG.......................................................................................................................................................................................................GCTGGTGCAAAAACTGATGGACCAGTCCAACTTGGAGCCTGGTCCTGGGATGCAGCTTCAGGTGAAGAATTTCGAGTAGGTGCTGGGTTAGCAGATTCCTATGCCATTACTTGGTGTGCTGTGGAGTATTTTGAAGCAAGTGGCGCTATTTTGCAAATGCTCCTCCAGCGGCTTGATTCCTGCACAACTCTCAGTGGAAGAACTCTTCTCCACCATGCTATTCTTTGTGGTAATGCAGGAGCAGTTTCGGTGCTTTTGAAATGCGGTGCTTATGTGGAATCTCCAGTTATAACCACCCGGAACATTGAGTTTCGTCCTATACACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E537913" ref_strand="+" ref_description="SGN-E537913 [TUS-56-M4]">
      <seq>caaaaagcgctcgacgagtatttgtctcttcttgttggccttactagaaaagaattcgggaatcaagaattgactggattcaagtggaaaaacttggaagatgggcaagaggaaacctctgtagcaaactcctggtttgaattactgtctgtccttcacatgatggctatgttaacattagtagaggcaaatatgaagttggcaccaagagacattgctatgactgaacgggctgtgtcaggagattgcatgagggatactgttgatttgctgctgaaagcatcaggttatttggatttctgtgtccaaaatgttcttgtccacataccacctgatatcaagaacaagttgcctaaacatctgcatcagggtattctcgaagctacctcaaatcaagcactagcacagggaactgaaattcaattaggtttggctcttgaaagtcaaaatgctactttatcagtgaagaggaggctggcatgtgaagcagtaagctactacgcacagacactttgctgcttgtctggagacaataatttccacagaacagcgaaaaagcatctgttgttcatcaaatggaaatatcttgaagcaaaggctgcagcttactactaccacggtataatcattgacaagggaacagaaccatcctgccacgttagtgcagtatgctgtttcctcgcagcagaagaactacttgctgagagcaaaaaagcctccttaagtttctgccttgcagaacctatcaccagaactcctccagcatggggtgttatgaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="65113" stop="62843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64813" g_stop="64762" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64761" i_stop="64689" i_length="73">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64688" g_stop="64630" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="111" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64629" i_stop="64541" i_length="89">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64540" g_stop="64408" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="244" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64407" i_stop="64336" i_length="72">
            <donor d_prob="0.626" d_score="1.00"/>
            <acceptor a_prob="0.127" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64335" g_stop="64239" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="341" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64238" i_stop="64150" i_length="89">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64149" g_stop="64083" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="408" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="64082" i_stop="63779" i_length="304">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="63778" g_stop="63680" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="507" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="63679" i_stop="63587" i_length="93">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="63586" g_stop="63497" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="597" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="63496" i_stop="63408" i_length="89">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="63407" g_stop="63253" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="752" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="63252" i_stop="63174" i_length="79">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.851" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="63173" g_stop="63143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="753" r_stop="782" r_length="30" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E537913" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>783</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E537913" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64813" e_stop="64762"/>
          <exon e_start="64688" e_stop="64630"/>
          <exon e_start="64540" e_stop="64408"/>
          <exon e_start="64335" e_stop="64239"/>
          <exon e_start="64149" e_stop="64083"/>
          <exon e_start="63778" e_stop="63680"/>
          <exon e_start="63586" e_stop="63497"/>
          <exon e_start="63407" e_stop="63253"/>
          <exon e_start="63173" e_stop="63143"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAAGCGCTCGACGAGTATTTGTCTCTTCTTGTTGGCCTTACTAGAAAAGGTTAGCACCCTTTCAAAATTTATCTACTTTATACTTTCAAATGTACAAATCGATTGATCATGTTATGCTACAGAATTCGGGAATCAAGAATTGACTGGATTCAAGTGGAAAAACTTGGAAGATGGGCAAGAGGTTCAAATTCTTTTATCAATTTAGTATCTGCTGAGTGGTTGTCACTTGTTGACATGATTTATGATCCTTTGCTTCTTTTAAATTAGCAGGAAACCTCTGTAGCAAACTCCTGGTTTGAATTACTGTCTGTCCTTCACATGATGGCTATGTTAACATTAGTAGAGGCAAATATGAAGTTGGCACCAAGAGACATTGCTATGACTGAACGGGCTGTGTCAGGAGGTATTGTGGTTACTAATTTTCTTAAAAACTCCAAGTGTGATCAGCATTGATCAAACAGCGTTTCAATTTCAGATTGCATGAGGGATACTGTTGATTTGCTGCTGAAAGCATCAGGTTATTTGGATTTCTGTGTCCAAAATGTTCTTGTCCACATACCACCTGATATCAAGTATGTAAATATATCTTCAGCCATATTTCTACATATATTTATCTGTTTCTGCGTCATTTTTATTAGCTATTTTATCCTTATTTTACCAGGAACAAGTTGCCTAAACATCTGCATCAGGGTATTCTCGAAGCTACCTCAAATCAAGCACTAGCACAGGTATCGACGATTAACTAGAACACGAGTTTTGATTCCTTATAGCTAATAAAATCAATGAAAAGGCAGCTGCTTTCCAGTCAGATCAGTGAAACAATCTCCAAAAATGGATATCATGTTAGATGATAAAGTGGGATCGATAAATGAATTCAAATCAAGTCATACAGGGCAGTTAATTAATTCAACTCATGATAATTGTAAGATCGAAGATTCTACTTCCTGTAGAATTCAATACGATGCAACTGACTGTTTAAAGTAAGAAGGTATTGAAATTCTAATATGGACTGATTCCTGAGTGATATTTCAGGGAACTGAAATTCAATTAGGTTTGGCTCTTGAAAGTCAAAATGCTACTTTATCAGTGAAGAGGAGGCTGGCATGTGAAGCAGTAAGCTACTACGCACAGGTACTTGAAATCTTATGAATGCTCCCAAGTCAACTCTTAGTTTGCTTTTTGCATCACATGTTTGTATATCTAACTTCTTTTTTTCTCTTTCAGACACTTTGCTGCTTGTCTGGAGACAATAATTTCCACAGAACAGCGAAAAAGCATCTGTTGTTCATCAAATGGAAATATCTTGAAGCAAAGGTTTTTCTTCCTACCAAAATTGTAGTTAAGCTTTTTTCATCTTCTTTCATTCCTATTGCCAATACATATAATGTGAACGACATATTCAGGCTGCAGCTTACTACTACCACGGTATAATCATTGACAAGGGAACAGAACCATCCTGCCACGTTAGTGCAGTATGCTGTTTCCTCGCAGCAGAAGAACTACTTGCTGAGAGCAAAAAAGCCTCCTTAAGTTTCTGCCTTGCAGAACCTATCACCAGGTTTTTAACTATTTATTTAATCACATTGCAATGAATGACCATCACAGAAGTAGTAAATTTCCTTCATGTTTTTTCGTAGAACTCCTCCAGCATGGGGTGTTATGAAACAT</genome_strand>
        <mrna_strand>CAAAAAGCGCTCGACGAGTATTTGTCTCTTCTTGTTGGCCTTACTAGAAAAG.........................................................................AATTCGGGAATCAAGAATTGACTGGATTCAAGTGGAAAAACTTGGAAGATGGGCAAGAG.........................................................................................GAAACCTCTGTAGCAAACTCCTGGTTTGAATTACTGTCTGTCCTTCACATGATGGCTATGTTAACATTAGTAGAGGCAAATATGAAGTTGGCACCAAGAGACATTGCTATGACTGAACGGGCTGTGTCAGGAG........................................................................ATTGCATGAGGGATACTGTTGATTTGCTGCTGAAAGCATCAGGTTATTTGGATTTCTGTGTCCAAAATGTTCTTGTCCACATACCACCTGATATCAA.........................................................................................GAACAAGTTGCCTAAACATCTGCATCAGGGTATTCTCGAAGCTACCTCAAATCAAGCACTAGCACAG................................................................................................................................................................................................................................................................................................................GGAACTGAAATTCAATTAGGTTTGGCTCTTGAAAGTCAAAATGCTACTTTATCAGTGAAGAGGAGGCTGGCATGTGAAGCAGTAAGCTACTACGCACAG.............................................................................................ACACTTTGCTGCTTGTCTGGAGACAATAATTTCCACAGAACAGCGAAAAAGCATCTGTTGTTCATCAAATGGAAATATCTTGAAGCAAAG.........................................................................................GCTGCAGCTTACTACTACCACGGTATAATCATTGACAAGGGAACAGAACCATCCTGCCACGTTAGTGCAGTATGCTGTTTCCTCGCAGCAGAAGAACTACTTGCTGAGAGCAAAAAAGCCTCCTTAAGTTTCTGCCTTGCAGAACCTATCACCAG...............................................................................AACTCCTCCAGCATGGGGTGTTATG-AACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E264998" ref_strand="+" ref_description="SGN-E264998 [cLEI-10-L11]">
      <seq>aaaaagcgctcgacgagtatttgtctcttcttgttggccttactagaaaagaattcgggaatcaagaattgactggattcaagtggaaaaacttggaagatgggcaagaggaaacctctgtagcaaactcctggtttgaattactgtctgtccttcacatgatggctatgttaacattagtagaggcaaatatgaagttggcaccaagagacattgctatgactgaacgggctgtgtcaggagattgcatgagggatactgttgatttgctgctgaaagcatcaggttatttggatttctgtgtccaaaatgttcttgtccacataccacctgatatcaagaacaagttgcctaaacatctgcatcagggtattctcgaagctacctcaaatcaagcactagcacagggaactgaaattcaattaggtttggctcttgaaagtcaaaatgctactttatcagtgaagaggaggctggcatgtgaagcagtaagctactacgcacagacactttgctgcttgtctggagacaataatttccacagaacagcgaaaaagcatctgttgttcatcaaatggaaatatcttgaagcaaaggctgcagcttactactaccacggtataatcattgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="65112" stop="63072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64812" g_stop="64762" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64761" i_stop="64689" i_length="73">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64688" g_stop="64630" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="110" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64629" i_stop="64541" i_length="89">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64540" g_stop="64408" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="243" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64407" i_stop="64336" i_length="72">
            <donor d_prob="0.626" d_score="1.00"/>
            <acceptor a_prob="0.127" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64335" g_stop="64239" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="340" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64238" i_stop="64150" i_length="89">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64149" g_stop="64083" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="407" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="64082" i_stop="63779" i_length="304">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="63778" g_stop="63680" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="506" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="63679" i_stop="63587" i_length="93">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="63586" g_stop="63497" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="596" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="63496" i_stop="63408" i_length="89">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="63407" g_stop="63372" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="632" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E264998" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E264998" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64812" e_stop="64762"/>
          <exon e_start="64688" e_stop="64630"/>
          <exon e_start="64540" e_stop="64408"/>
          <exon e_start="64335" e_stop="64239"/>
          <exon e_start="64149" e_stop="64083"/>
          <exon e_start="63778" e_stop="63680"/>
          <exon e_start="63586" e_stop="63497"/>
          <exon e_start="63407" e_stop="63372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGCGCTCGACGAGTATTTGTCTCTTCTTGTTGGCCTTACTAGAAAAGGTTAGCACCCTTTCAAAATTTATCTACTTTATACTTTCAAATGTACAAATCGATTGATCATGTTATGCTACAGAATTCGGGAATCAAGAATTGACTGGATTCAAGTGGAAAAACTTGGAAGATGGGCAAGAGGTTCAAATTCTTTTATCAATTTAGTATCTGCTGAGTGGTTGTCACTTGTTGACATGATTTATGATCCTTTGCTTCTTTTAAATTAGCAGGAAACCTCTGTAGCAAACTCCTGGTTTGAATTACTGTCTGTCCTTCACATGATGGCTATGTTAACATTAGTAGAGGCAAATATGAAGTTGGCACCAAGAGACATTGCTATGACTGAACGGGCTGTGTCAGGAGGTATTGTGGTTACTAATTTTCTTAAAAACTCCAAGTGTGATCAGCATTGATCAAACAGCGTTTCAATTTCAGATTGCATGAGGGATACTGTTGATTTGCTGCTGAAAGCATCAGGTTATTTGGATTTCTGTGTCCAAAATGTTCTTGTCCACATACCACCTGATATCAAGTATGTAAATATATCTTCAGCCATATTTCTACATATATTTATCTGTTTCTGCGTCATTTTTATTAGCTATTTTATCCTTATTTTACCAGGAACAAGTTGCCTAAACATCTGCATCAGGGTATTCTCGAAGCTACCTCAAATCAAGCACTAGCACAGGTATCGACGATTAACTAGAACACGAGTTTTGATTCCTTATAGCTAATAAAATCAATGAAAAGGCAGCTGCTTTCCAGTCAGATCAGTGAAACAATCTCCAAAAATGGATATCATGTTAGATGATAAAGTGGGATCGATAAATGAATTCAAATCAAGTCATACAGGGCAGTTAATTAATTCAACTCATGATAATTGTAAGATCGAAGATTCTACTTCCTGTAGAATTCAATACGATGCAACTGACTGTTTAAAGTAAGAAGGTATTGAAATTCTAATATGGACTGATTCCTGAGTGATATTTCAGGGAACTGAAATTCAATTAGGTTTGGCTCTTGAAAGTCAAAATGCTACTTTATCAGTGAAGAGGAGGCTGGCATGTGAAGCAGTAAGCTACTACGCACAGGTACTTGAAATCTTATGAATGCTCCCAAGTCAACTCTTAGTTTGCTTTTTGCATCACATGTTTGTATATCTAACTTCTTTTTTTCTCTTTCAGACACTTTGCTGCTTGTCTGGAGACAATAATTTCCACAGAACAGCGAAAAAGCATCTGTTGTTCATCAAATGGAAATATCTTGAAGCAAAGGTTTTTCTTCCTACCAAAATTGTAGTTAAGCTTTTTTCATCTTCTTTCATTCCTATTGCCAATACATATAATGTGAACGACATATTCAGGCTGCAGCTTACTACTACCACGGTATAATCATTGAC</genome_strand>
        <mrna_strand>AAAAAGCGCTCGACGAGTATTTGTCTCTTCTTGTTGGCCTTACTAGAAAAG.........................................................................AATTCGGGAATCAAGAATTGACTGGATTCAAGTGGAAAAACTTGGAAGATGGGCAAGAG.........................................................................................GAAACCTCTGTAGCAAACTCCTGGTTTGAATTACTGTCTGTCCTTCACATGATGGCTATGTTAACATTAGTAGAGGCAAATATGAAGTTGGCACCAAGAGACATTGCTATGACTGAACGGGCTGTGTCAGGAG........................................................................ATTGCATGAGGGATACTGTTGATTTGCTGCTGAAAGCATCAGGTTATTTGGATTTCTGTGTCCAAAATGTTCTTGTCCACATACCACCTGATATCAA.........................................................................................GAACAAGTTGCCTAAACATCTGCATCAGGGTATTCTCGAAGCTACCTCAAATCAAGCACTAGCACAG................................................................................................................................................................................................................................................................................................................GGAACTGAAATTCAATTAGGTTTGGCTCTTGAAAGTCAAAATGCTACTTTATCAGTGAAGAGGAGGCTGGCATGTGAAGCAGTAAGCTACTACGCACAG.............................................................................................ACACTTTGCTGCTTGTCTGGAGACAATAATTTCCACAGAACAGCGAAAAAGCATCTGTTGTTCATCAAATGGAAATATCTTGAAGCAAAG.........................................................................................GCTGCAGCTTACTACTACCACGGTATAATCATTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E314987" ref_strand="+" ref_description="SGN-E314987 [cTOA-31-I22]">
      <seq>tcctttacttgctctgcatgccaactaccctcaattttgatctctgtttttttttaaaaaatttcaatcttgttcttctcccaagcaaaaaaaatataataaaaaagaacattcctttaatttgcaatataaggcaatctattcgcatttttaatgaggttttatcaagatcgtagcagcattaactgtttggtagctcaatcttgacttgtctgcacatttagactttaatgcttttcattttcactgaactagaaagggtccacccatataatttccttattcatgattagccaagaacgtaaaatgggttgcttcaagatacttggaaacttggctccattttgaagtcactgctaaatgggtttcttcaatatttttgtgatagtattggttatttgcgctttctttatagcaaatacttatcagttacagtcctatgaaattcaagctcttcttcagttgaggaagcacttggaatatccagttcagttggatgtttgggagaattaccatggagatttttgcagcttgacttcaacactgcatatgagcattaactgtcaagataactctgttactgaactcaaaatcaaaggagataagttagttaagttgaatgaatttcatggatttgcattncnaaccaaacattatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="+" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="71456" stop="72718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71756" g_stop="72418" g_length="663"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="659" r_length="659" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="+" ref_id="SGN-E314987" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71756" e_stop="72418"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTTACTTGCTCTGCATGCCAACTACCCTCAATTTTGATCTCTGTTTTTTTTTAAAAAAAAATTTCAATCTTGTTCTTCTCCCAAGCAAAAAAAATATAATAAAAAAGAACATTCCTTTAATTTGCAATATAAGGCAATCTATTCGCATTTTTAATGAGGTTTTATCAAGATCGTAGCAGCATTAACTGTTTGGTAGCTCAATCTTGACTTGTCTGCACATTTAGACTTTAATGCTTTTCATTTTCACTGAACTAGAAAGGGTCCACCCATATAATTTCCTTATTCATGATTAGCCAAGAACGTAAAATGGGTTGCTTCAAGATACTTGGAAACTTGGCTCCATTTTGAAGTCACTGCTAAATGGGTTTCTTCAATATTTTTGTGATAGTATTGGTTATTTGCGCTTTCTTTATAGCAAATACTTATCAGTTACAGTCCTATGAAATTCAAGCTCTTCTTCAGTTGAGGAAGCACTTGGAATATCCAGTTCAGTTGGATGTTTGGGAGAATTACCATGGAGATTTTTGCAGCTTGACTTCAACACTGCATATGAGCATTAACTGTCAAGATAACTCTGTTACTGAACTCAAAATCAAAGGAGATAAGTTAGTTAAGTTGAATGAATTTCATGGATTTGCAATTCCAAACCAAACATTATCT</genome_strand>
        <mrna_strand>TCCTTTACTTGCTCTGCATGCCAACTACCCTCAATTTTGATCTCTGTTTTTTTTT---AAAAAATTTCAATCTTGTTCTTCTCCCAAGCAAAAAAAATATAATAAAAAAGAACATTCCTTTAATTTGCAATATAAGGCAATCTATTCGCATTTTTAATGAGGTTTTATCAAGATCGTAGCAGCATTAACTGTTTGGTAGCTCAATCTTGACTTGTCTGCACATTTAGACTTTAATGCTTTTCATTTTCACTGAACTAGAAAGGGTCCACCCATATAATTTCCTTATTCATGATTAGCCAAGAACGTAAAATGGGTTGCTTCAAGATACTTGGAAACTTGGCTCCATTTTGAAGTCACTGCTAAATGGGTTTCTTCAATATTTTTGTGATAGTATTGGTTATTTGCGCTTTCTTTATAGCAAATACTTATCAGTTACAGTCCTATGAAATTCAAGCTCTTCTTCAGTTGAGGAAGCACTTGGAATATCCAGTTCAGTTGGATGTTTGGGAGAATTACCATGGAGATTTTTGCAGCTTGACTTCAACACTGCATATGAGCATTAACTGTCAAGATAACTCTGTTACTGAACTCAAAATCAAAGGAGATAAGTTAGTTAAGTTGAATGAATTTCATGGATTTGC-ATTNCNAACCAAACATTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E740585" ref_strand="+" ref_description="SGN-E740585 [LC22AD02]">
      <seq>acgaattacaggaaaagaaatagcattattaacaggtgtcattggggggattgtaattgttgtggtgtttctgttagttgtgcttctcatcttccgtagaaaacgacatgcgcataacatggtggataagcacatccctccgaaagttgtgcaaagtacacagccggttccctctggactcctagtaaatgccagagtcatttctcaagtggcaaacacaggatcacaaggtgccccatcatatcgagtgttctccatggaagaattgctagaagcaacagaaaattttgatcagtcagcattacttggtgaaggttcagttggaaaaatttacaagggaagattagagaatggagcttacattgctgtaaggtcactaaatgtgtacagaagatactctaaccggaacctcaaactgcgattggacttactgtcaaagtttcgtcacccccatttagttagccttctgggtcactgcattgatggtggagcaccagatgattcaactgtcccccgaatttttctcatttatgaatatatctctaatggaaactttcgtgctcatctatcagaaaatagttcaagaaagatcctcaagtggttagacaggttgtcagtgctgattggtgttgccaaggcagtgcactttcttcacacaggtgtaattccttcttcatttagcaaccgcttgaagacgagtaacatattgcttgatgagcataacatggcaaaactaagtgattttgggatgtccattcttatggaagaaagtgaaaaggcaaaaggagatgacgtcacctcctggcatatgacaaagaaagaggacgatgtttataactttggtttcatattactggaatcgctggttggcccttctgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="+" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="72973" stop="75764"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73273" g_stop="73466" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73467" i_stop="73563" i_length="97">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.626" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73564" g_stop="73697" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="328" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73698" i_stop="74237" i_length="540">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74238" g_stop="74481" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="572" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74482" i_stop="74909" i_length="428">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.486" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74910" g_stop="75115" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="778" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75116" i_stop="75203" i_length="88">
            <donor d_prob="0.870" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75204" g_stop="75229" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="779" r_stop="804" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="75230" i_stop="75388" i_length="159">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="75389" g_stop="75464" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="805" r_stop="880" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="+" ref_id="SGN-E740585" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>880</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740585" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73273" e_stop="73466"/>
          <exon e_start="73564" e_stop="73697"/>
          <exon e_start="74238" e_stop="74481"/>
          <exon e_start="74910" e_stop="75115"/>
          <exon e_start="75204" e_stop="75229"/>
          <exon e_start="75389" e_stop="75464"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAATTACAGGAAAAGAAATAGCATTATTAACAGGTGTCATTGGGGGGATTGTAATTGTTGTGGTGTTTCTGTTAGTTGTGCTTCTCATCTTCCGTAGAAAACGACATGCGCATAACATGGTGGATAAGCACATCCCTCCGAAAGTTGTGCAAAGTACACAGCCGGTTCCCTCTGGACTCCTAGTAAATGCCAGTGAGTTGATGTTTTTCTTGTTTCATGTTTAATCTGTTTAATTTATATGAAGAAAATGTTCTCCAGAAAAGCTTGAACTCAATCTTCAAATTCTCAGGAGTCATTTCTCAAGTGGCAAACACAGGATCACAAGGTGCCCCATCATATCGAGTGTTCTCCATGGAAGAATTGCTAGAAGCAACAGAAAATTTTGATCAGTCAGCATTACTTGGTGAAGGTTCAGTTGGAAAAGTATGGCTTCTAAACAATCTCTATGGTTCTCATTGATAATTATTTATCTTCTTGATGTTTCCATTCAATGGTCACGCTAAATTTTGGCTCAATGTGATATACTTGCTGTAAAACTTGAATAAATGAAGCAGGGCGTAAGTTTTTTGTGTAAATTTTGTTGCATAGACCATGTCCAACAACGATAATGCAATGAATGCACTAGTTCGCCAAAGTACAAAATAGATTTGGGTGTTTTTCTTTTTTAGTACTTACCTATCATATTTGCATTCTTAATGTGCATATGTGACTTCATAAAAACTGGTGTCACCAGTAATGCTTTTGTGCATTTGATTTAATATCTAATGAACACATGACAGTTCAATTAAATATACAGAATACCCTTAAAGGCAAAATTGGATAGTCTCATACGTTTGAGTGCCTATGCAGTGAGTTGACATCTCTGCAACTTTGATTGATATGGTGTTAGCGTTATTATGTCTTTCTTGAAAAAGACAGTTAATTTAGTTATATGCATTCCCTCAATATTTATCTCCATTTCAGATTTACAAGGGAAGATTAGAGAATGGAGCTTACATTGCTGTAAGGTCACTAAATGTGTACAGAAGATACTCTAACCGGAACCTCAAACTGCGATTGGACTTACTGTCAAAGTTTCGTCACCCCCATTTAGTTAGCCTTCTGGGTCACTGCATTGATGGTGGAGCACCAGATGATTCAACTGTCCCCCGAATTTTTCTCATTTATGAATATATCTCTAATGGAAACTTTCGTGCTCATCTATCAGGTCAGCTATGTAAAACCTTTAGCATGAGCATTTCATCTGTTTTGATGCTTGGTTGAATATGGAAGTATTATATGCACATATGGAGCGCTGGTTTGATTCTTTTCTCCCAGAAATGATTGGGATACCCTCGTTGATGAATCTCTATGTAGCATTGCAAGTATTTTGCTGCTTATGAGGTTGAGACATCTTATTCATCATATTAATTTCACACATAGTGCTATTCAGTATGCAATCACTGTCAGTTTGATTGAGCAACAATGTAATGATTCACTTACATGAAGTTCTTTTGGTTGACTTTCATACTGAGAAACTGTTGGACCTTTATTTTTGTTCTTATATATTTTCACTTAACCCTGCATGTCCAATACAGAAAATACAAGAGACATGCCATAACGTATTCAGCTTATCTCAAACACTTGAACTTGCAGAAAATAGTTCAAGAAAGATCCTCAAGTGGTTAGACAGGTTGTCAGTGCTGATTGGTGTTGCCAAGGCAGTGCACTTTCTTCACACAGGTGTAATTCCTTCTTCATTTAGCAACCGCTTGAAGACGAGTAACATATTGCTTGATGAGCATAACATGGCAAAACTAAGTGATTTTGGGATGTCCATTCTTATGGAAGAAAGTGAAAAGGTGGGTACTTTAATATTTTGTGTGAAAGGTGAAAATTCAAAATTTAGGATAGCTGGTAATTTCTCATGCTGAATATGTCTTTTTTCAGGCAAAAGGAGATGACGTCACCTCCTGGTATGAAACTCTTTACTCATATATTCTGTAACGTGCCTTAGCAACTTTCTTATGCTACACCAACTGGCATTCTATTTCAAAAATGTGAACTAGAGTCATATATATCATCTACCATAGCTGTTTGCAGGATATAATCAGTGATATTTTATTCTCGTGTAGGCATATGACAAAGAAAGAGGACGATGTTTATAACTTTGGTTTCATATTACTGGAATCGCTGGTTGGCCCTTCTGTC</genome_strand>
        <mrna_strand>ACGAATTACAGGAAAAGAAATAGCATTATTAACAGGTGTCATTGGGGGGATTGTAATTGTTGTGGTGTTTCTGTTAGTTGTGCTTCTCATCTTCCGTAGAAAACGACATGCGCATAACATGGTGGATAAGCACATCCCTCCGAAAGTTGTGCAAAGTACACAGCCGGTTCCCTCTGGACTCCTAGTAAATGCCA.................................................................................................GAGTCATTTCTCAAGTGGCAAACACAGGATCACAAGGTGCCCCATCATATCGAGTGTTCTCCATGGAAGAATTGCTAGAAGCAACAGAAAATTTTGATCAGTCAGCATTACTTGGTGAAGGTTCAGTTGGAAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTACAAGGGAAGATTAGAGAATGGAGCTTACATTGCTGTAAGGTCACTAAATGTGTACAGAAGATACTCTAACCGGAACCTCAAACTGCGATTGGACTTACTGTCAAAGTTTCGTCACCCCCATTTAGTTAGCCTTCTGGGTCACTGCATTGATGGTGGAGCACCAGATGATTCAACTGTCCCCCGAATTTTTCTCATTTATGAATATATCTCTAATGGAAACTTTCGTGCTCATCTATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATAGTTCAAGAAAGATCCTCAAGTGGTTAGACAGGTTGTCAGTGCTGATTGGTGTTGCCAAGGCAGTGCACTTTCTTCACACAGGTGTAATTCCTTCTTCATTTAGCAACCGCTTGAAGACGAGTAACATATTGCTTGATGAGCATAACATGGCAAAACTAAGTGATTTTGGGATGTCCATTCTTATGGAAGAAAGTGAAAAG........................................................................................GCAAAAGGAGATGACGTCACCTCCTG...............................................................................................................................................................GCATATGACAAAGAAAGAGGACGATGTTTATAACTTTGGTTTCATATTACTGGAATCGCTGGTTGGCCCTTCTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E342315" ref_strand="+" ref_description="SGN-E342315 [cTOF-8-B13]">
      <seq>gccttctgggtcacctgcactgatggtggagcacccagatgaactcaacctgtcccccgaatttttctcatttatgaatatatctctaatggaaacctttcgtgctcatctatcagaaaatagttcaagaaagatcctcaagtggttagacaggttgtcagtgctgattggtgttgccaaggcagtgcactttcttcacacaggtgtaattccttcttcatttagcaaccgcttgaagacgagtaacatattgcttgatgagcataacatggcaaaactaagtgattttgggatgtccattcttatggaagaaagtgaaaaggcaaaaggagatgacgtcacctcctggcatatgacaaagaaagaggacgatgtttataactttggtttcatattactggaatcgctggttggcccttctgtcagtggaaaaggagaagcatttttgatgaatgaaatggcatcctttggtagccaagatggtcgacgcagaattgtggatccaatagtgctagccactagcttcaatgagtctttgtcaattgtaatatccatcaccaacaaatgcatatctacagnagtcgtcaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="+" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="74071" stop="76267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74371" g_stop="74481" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.892"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74482" i_stop="74909" i_length="428">
            <donor d_prob="0.985" d_score="0.96"/>
            <acceptor a_prob="0.486" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74910" g_stop="75115" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="322" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75116" i_stop="75203" i_length="88">
            <donor d_prob="0.870" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75204" g_stop="75229" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="348" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75230" i_stop="75388" i_length="159">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75389" g_stop="75500" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="460" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75501" i_stop="75837" i_length="337">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75838" g_stop="75967" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="591" r_length="131" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="+" ref_id="SGN-E342315" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74371" e_stop="74481"/>
          <exon e_start="74910" e_stop="75115"/>
          <exon e_start="75204" e_stop="75229"/>
          <exon e_start="75389" e_stop="75500"/>
          <exon e_start="75838" e_stop="75967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTCTGGGTCA-CTGCATTGATGGTGGAGCA-CCAGATG-ATTCAA-CTGTCCCCCGAATTTTTCTCATTTATGAATATATCTCTAATGGAAAC-TTTCGTGCTCATCTATCAGGTCAGCTATGTAAAACCTTTAGCATGAGCATTTCATCTGTTTTGATGCTTGGTTGAATATGGAAGTATTATATGCACATATGGAGCGCTGGTTTGATTCTTTTCTCCCAGAAATGATTGGGATACCCTCGTTGATGAATCTCTATGTAGCATTGCAAGTATTTTGCTGCTTATGAGGTTGAGACATCTTATTCATCATATTAATTTCACACATAGTGCTATTCAGTATGCAATCACTGTCAGTTTGATTGAGCAACAATGTAATGATTCACTTACATGAAGTTCTTTTGGTTGACTTTCATACTGAGAAACTGTTGGACCTTTATTTTTGTTCTTATATATTTTCACTTAACCCTGCATGTCCAATACAGAAAATACAAGAGACATGCCATAACGTATTCAGCTTATCTCAAACACTTGAACTTGCAGAAAATAGTTCAAGAAAGATCCTCAAGTGGTTAGACAGGTTGTCAGTGCTGATTGGTGTTGCCAAGGCAGTGCACTTTCTTCACACAGGTGTAATTCCTTCTTCATTTAGCAACCGCTTGAAGACGAGTAACATATTGCTTGATGAGCATAACATGGCAAAACTAAGTGATTTTGGGATGTCCATTCTTATGGAAGAAAGTGAAAAGGTGGGTACTTTAATATTTTGTGTGAAAGGTGAAAATTCAAAATTTAGGATAGCTGGTAATTTCTCATGCTGAATATGTCTTTTTTCAGGCAAAAGGAGATGACGTCACCTCCTGGTATGAAACTCTTTACTCATATATTCTGTAACGTGCCTTAGCAACTTTCTTATGCTACACCAACTGGCATTCTATTTCAAAAATGTGAACTAGAGTCATATATATCATCTACCATAGCTGTTTGCAGGATATAATCAGTGATATTTTATTCTCGTGTAGGCATATGACAAAGAAAGAGGACGATGTTTATAACTTTGGTTTCATATTACTGGAATCGCTGGTTGGCCCTTCTGTCAGTGGAAAAGGAGAAGCATTTTTGATGAATGAAATGGTATGGAACTGCTATATTATTATGTATTCAACTCCTTTGCCATTGACAGTAACGTAAAGTACTCTTCAGCAATTTGTTCCCTTTAGGATCCTAAACGTTCTTGGAATGTTGGATAAGTAACAAAAGTTCATTCTCTGCATCCCAACTTTACAATCAGTACTAATATAGATTAACAGAACTACCCACATTATGTAATTTTTATAAGGTTTCCTTCTGATATGCAAGTACCAAAGGGAGAAAAGTTGAGTCTGATATAAAAGAGTCAAAAGTCTTGATTTTTTCACTGGTGTATTATCGCATGCCAAACGCCTACTTAGATTTTCTCTTTGAATTACAGGCATCCTTTGGTAGCCAAGATGGTCGACGCAGAATTGTGGATCCAATAGTGCTAGCCACTAGCTCCAATGAGTCTTTGTCAATTGTAATATCCATCACCAACAAATGCATATCTACAG-AGTCGTCAACTC</genome_strand>
        <mrna_strand>GCCTTCTGGGTCACCTGCACTGATGGTGGAGCACCCAGATGAACTCAACCTGTCCCCCGAATTTTTCTCATTTATGAATATATCTCTAATGGAAACCTTTCGTGCTCATCTATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATAGTTCAAGAAAGATCCTCAAGTGGTTAGACAGGTTGTCAGTGCTGATTGGTGTTGCCAAGGCAGTGCACTTTCTTCACACAGGTGTAATTCCTTCTTCATTTAGCAACCGCTTGAAGACGAGTAACATATTGCTTGATGAGCATAACATGGCAAAACTAAGTGATTTTGGGATGTCCATTCTTATGGAAGAAAGTGAAAAG........................................................................................GCAAAAGGAGATGACGTCACCTCCTG...............................................................................................................................................................GCATATGACAAAGAAAGAGGACGATGTTTATAACTTTGGTTTCATATTACTGGAATCGCTGGTTGGCCCTTCTGTCAGTGGAAAAGGAGAAGCATTTTTGATGAATGAAATG.................................................................................................................................................................................................................................................................................................................................................GCATCCTTTGGTAGCCAAGATGGTCGACGCAGAATTGTGGATCCAATAGTGCTAGCCACTAGCTTCAATGAGTCTTTGTCAATTGTAATATCCATCACCAACAAATGCATATCTACAGNAGTCGTCAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E732818" ref_strand="+" ref_description="SGN-E732818 [LB03AH10]">
      <seq>ctgtaacgtgccttagcaactttcttatgctacaccaactggcattctatttcaaaaatgtgaactagagtcatatatatcatctaccatagctgtttgcaggatataatcagtgatattttattctcgtgtaggcatatgacaaagaaagaggacgatgtttataactttggtttcatattactggaatcgctggttggcccttctgtcagtggaaaaggagaagcatttttgatgaatgaaatggcatcctttggtagccaagatggtcgacgcagaattgtggatccaatagtgctagccactagctccaatgagtctttgtcaattgtaatatccatcaccaacaaatgcatatctacagagtcgtcaactcggccctcgtttgaggatgttctgtggaacctacaatatgctgctcaagttcaagctacagctgatgcagatcagaaatccgatgctacttcaccgacataaggagtccaagcgcatacttaatttggtcagagcataggagaatgttagctgattaatttcatgatggttgtgggagtaccaaccggtaggctagccttaaagctcaagtttaagctacaggtccccctatattttgtatcagaagtgtaaattttgttgattctagtaataggtgatgtttccataaaannaaaaanaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="+" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="74955" stop="76556"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75255" g_stop="75500" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75501" i_stop="75837" i_length="337">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75838" g_stop="76253" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="662" r_length="416" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="669" polyA_stop="682"/>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="+" ref_id="SGN-E732818" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75255" e_stop="75500"/>
          <exon e_start="75838" e_stop="76253"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTAACGTGCCTTAGCAACTTTCTTATGCTACACCAACTGGCATTCTATTTCAAAAATGTGAACTAGAGTCATATATATCATCTACCATAGCTGTTTGCAGGATATAATCAGTGATATTTTATTCTCGTGTAGGCATATGACAAAGAAAGAGGACGATGTTTATAACTTTGGTTTCATATTACTGGAATCGCTGGTTGGCCCTTCTGTCAGTGGAAAAGGAGAAGCATTTTTGATGAATGAAATGGTATGGAACTGCTATATTATTATGTATTCAACTCCTTTGCCATTGACAGTAACGTAAAGTACTCTTCAGCAATTTGTTCCCTTTAGGATCCTAAACGTTCTTGGAATGTTGGATAAGTAACAAAAGTTCATTCTCTGCATCCCAACTTTACAATCAGTACTAATATAGATTAACAGAACTACCCACATTATGTAATTTTTATAAGGTTTCCTTCTGATATGCAAGTACCAAAGGGAGAAAAGTTGAGTCTGATATAAAAGAGTCAAAAGTCTTGATTTTTTCACTGGTGTATTATCGCATGCCAAACGCCTACTTAGATTTTCTCTTTGAATTACAGGCATCCTTTGGTAGCCAAGATGGTCGACGCAGAATTGTGGATCCAATAGTGCTAGCCACTAGCTCCAATGAGTCTTTGTCAATTGTAATATCCATCACCAACAAATGCATATCTACAGAGTCGTCAACTCGGCCCTCGTTTGAGGATGTTCTGTGGAACCTACAATATGCTGCTCAAGTTCAAGCTACAGCTGATGCAGATCAGAAATCCGATGCTACTTCACCGACATAAGGAGTCCAAGCGCATACTTAATTTGGTCAGAGCATAGGAGAATGTTAGCTGATTAATTTCATGATGGTTGTGGGAGTACCAACCGGTAGGCTAGCCTTAAAGCTCAAGTTTAAGCTACAGGTCCCCCTATATTTTGTATCAGAAGTGTAAATTTTGTTGATTCTAGTAATAGGTGATGTTTCCAT</genome_strand>
        <mrna_strand>CTGTAACGTGCCTTAGCAACTTTCTTATGCTACACCAACTGGCATTCTATTTCAAAAATGTGAACTAGAGTCATATATATCATCTACCATAGCTGTTTGCAGGATATAATCAGTGATATTTTATTCTCGTGTAGGCATATGACAAAGAAAGAGGACGATGTTTATAACTTTGGTTTCATATTACTGGAATCGCTGGTTGGCCCTTCTGTCAGTGGAAAAGGAGAAGCATTTTTGATGAATGAAATG.................................................................................................................................................................................................................................................................................................................................................GCATCCTTTGGTAGCCAAGATGGTCGACGCAGAATTGTGGATCCAATAGTGCTAGCCACTAGCTCCAATGAGTCTTTGTCAATTGTAATATCCATCACCAACAAATGCATATCTACAGAGTCGTCAACTCGGCCCTCGTTTGAGGATGTTCTGTGGAACCTACAATATGCTGCTCAAGTTCAAGCTACAGCTGATGCAGATCAGAAATCCGATGCTACTTCACCGACATAAGGAGTCCAAGCGCATACTTAATTTGGTCAGAGCATAGGAGAATGTTAGCTGATTAATTTCATGATGGTTGTGGGAGTACCAACCGGTAGGCTAGCCTTAAAGCTCAAGTTTAAGCTACAGGTCCCCCTATATTTTGTATCAGAAGTGTAAATTTTGTTGATTCTAGTAATAGGTGATGTTTCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E724024" ref_strand="+" ref_description="SGN-E724024 [FC22DD01]">
      <seq>atatccatcaccaacacatgcatatctacagagtcgtcaactcggccctcgtttgaggatgttctgtggaacctacaatatgctgctcaagttcaagctacagctgatgcagatcagaaatccgatgctacttcaccgacataaggagtccaagcgcatacttaatttggtcagagcataggagaatgttagctgattaatttcatgatggttgtgggagtaccaaccggtaggctagccttaaagctcaagtttaagctacaggtccccctatattttgtatcagaagtgtaaattttgttgattctagtaataggtgatgtttccatatagcatagaccctcattttaaattccatcattgcaactaggcaattgaagtcgtacaaatctagattcagacaagacaatacatatgtttggtgcaacggaaataaaaagaagaagatatgatagacatcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="+" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="75625" stop="99844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75925" g_stop="76388" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="464" r_length="464" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76389" i_stop="77239" i_length="851">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.54"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77240" g_stop="77321" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="546" r_length="82" r_score="0.573"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="+" ref_id="SGN-E724024" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724024" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75925" e_stop="76388"/>
          <exon e_start="77240" e_stop="77321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATCCATCACCAACAAATGCATATCTACAGAGTCGTCAACTCGGCCCTCGTTTGAGGATGTTCTGTGGAACCTACAATATGCTGCTCAAGTTCAAGCTACAGCTGATGCAGATCAGAAATCCGATGCTACTTCACCGACATAAGGAGTCCAAGCGCATACTTAATTTGGTCAGAGCATAGGAGAATGTTAGCTGATTAATTTCATGATGGTTGTGGGAGTACCAACCGGTAGGCTAGCCTTAAAGCTCAAGTTTAAGCTACAGGTCCCCCTATATTTTGTATCAGAAGTGTAAATTTTGTTGATTCTAGTAATAGGTGATGTTTCCATATAGCATAGACCCTCATTTTAAATTCCATCATTGCAACTAGGCAATTGAAGTCGTACAAATCTAGATTCAGACAAGACAATACATATGTTTGGTGCAACGGAAATAAAAAGAAGAAGATATGATAGACATCAAATATTTTGGTGCAGTTGGTTGAATTACTTGCACGTAAAATTGAAGGACAAAAATAGGCAATATGATTAGCAAATGGTAAGTTCCGGCTTCATTAACTTATTTGATTTACCCATCTTATGGTAAAGGCAACTAATAGTAACATAAAATTGGATCTGTGTGGAATGAAGTGATCCATAAACAAATAAACAATACTTTCATATCTTTTAATGTTTAAATTTTTTTAATTAAAAAAAAAGCAGCTTTAAGAGGGCTACAAAATTAAATCCTTTTGAATTGAGAAAGAAGAGGGAGGACAAAATCAAACAGTGGGCCGCTGTTGAGCAGTACCGACAAGGGCCATGTTTGGTTTTATCATTCTTTAATATGAACGTGCCACCAACTAAAATCTTTTTAGAATCTATTTACGAAACCTTCATTTTCATATTTCCTGGTTGTATTGTGTTCCACATATTTATTAATCTATAAAAACCATTATAAATAATTTGTGAAATGTAGTTATCACATAAATTTTTGCAGTAATCATCAATAATTCATAACATGAAAATGCTAATCGACCAACTTGTCTTAAAATATATTAATAGTAAGAAATCCTTACAAAATTTTACTATATAAAGCTCAAATTCATTTAAAAAGGAAATTCCTTCTTCAATAATTGAAAACACGCATCTAGCTTAAAATAACAGTATTTGCAATCCTTATTCAGGTAGTTTAAGCTCTATGAATTATCATGCCAAAAATATTTTTACTACTCCCTTCATTTTATATTAAATTAATTTTTGAGACTGATTCTCCAAATTTACCCTTCATTAATTCAGTAATTAATTAATATTAAATTATTTTAATCATAAAATTTAACAATAATTAATAAAAAAATTAAATGAAATTTATATCTTAATCTACTACCTCAAAAACTAACTAAATATAAAACGAAGAAA</genome_strand>
        <mrna_strand>ATATCCATCACCAACACATGCATATCTACAGAGTCGTCAACTCGGCCCTCGTTTGAGGATGTTCTGTGGAACCTACAATATGCTGCTCAAGTTCAAGCTACAGCTGATGCAGATCAGAAATCCGATGCTACTTCACCGACATAAGGAGTCCAAGCGCATACTTAATTTGGTCAGAGCATAGGAGAATGTTAGCTGATTAATTTCATGATGGTTGTGGGAGTACCAACCGGTAGGCTAGCCTTAAAGCTCAAGTTTAAGCTACAGGTCCCCCTATATTTTGTATCAGAAGTGTAAATTTTGTTGATTCTAGTAATAGGTGATGTTTCCATATAGCATAGACCCTCATTTTAAATTCCATCATTGCAACTAGGCAATTGAAGTCGTACAAATCTAGATTCAGACAAGACAATACATATGTTTGGTGCAACGGAAATAAAAAGAAGAAGATATGATAGACATCAAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E737229" ref_strand="+" ref_description="SGN-E737229 [LC08DG05]">
      <seq>ggctgtgtgtcggcaaccactgcaatgttctactctcctcctaaccattgcaggctttgttagaattccattttacatttgtgtatcggaaatcatggtttcgggactgagggcgaaaactaggaaaggtccctcagttcaagtagattatctaattcatattcaggagatcaaaccttggcctccctcgcagtcattgaagtcggttcgtgctattgtgatccaatgggaaaatggagataggaatggttctactagtcaagttgtcccatttttaggctctggtgttggtgatggaagaattgagttcaatgagtcctttaaactacctgtgacactactgaaggaaatttctaataaagggggtgatggaaacagttttcaaaaaaattgcatggagttcaacttgtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="+" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="77784" stop="79179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78084" g_stop="78127" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78128" i_stop="78510" i_length="383">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78511" g_stop="78879" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="413" r_length="369" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="+" ref_id="SGN-E737229" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78084" e_stop="78127"/>
          <exon e_start="78511" e_stop="78879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTGTGTGTCGGCAACCACTGCAATGTTCTACTCTCCTCCTAAGTATGTCTCCTCCAAATCTCTATCTTTTTCTTTTTATGTCTGCAATGGCTTCATTTTTGTACTCTCCTTTGCTTCTTAACTTGGTTCTTTTATGAACATTTGATTTTGTTTTGTTTTCTAATTTCTATGGGCTATTGATTGGCTTAAGCATTTAAGGTGAGTGTTAAATAGACTCTCAATGTGCTCTTTTGAAGATTGACAATGAAAATATAAGCCTGATACTCTAATCACATTTATTCCACAAGTTCTACTCACCTACTGATGGTACTTTTTTTTTCCCCGCTGATTCCCTTGTCTTGCATTTATTGTGTTCAACAGTAGATTAGTCCAGTTTAGAAAAGATTAGTAGATTAGCCAAGGTAACAAGTTTGTTTTGTTTTTAGCCATTGCAGGCTTTGTTAGAATTCCATTTTACATTTGTGTATCGGAAATCATGGTTTCGGGACTGAGGGCGAAAACTAGGAAAGGTCCCTCAGTTCAAGTAGATTATCTAATTCATATTCAGGAGATCAAACCTTGGCCTCCCTCGCAGTCATTGAAGTCGGTTCGTGCTATTGTGATCCAATGGGAAAATGGAGATAGGAATGGTTCTACTAGTCAAGTTGTCCCATTTTTAGGCTCTGGTGTTGGTGATGGAAGAATTGAGTTCAATGAGTCCTTTAAACTACCTGTGACACTACTGAAGGAAATTTCTAATAAAGGGGGTGATGGAAACAGTTTTCAAAAAAATTGCATGGAGTTCAACTTGTATG</genome_strand>
        <mrna_strand>GGCTGTGTGTCGGCAACCACTGCAATGTTCTACTCTCCTCCTAA...............................................................................................................................................................................................................................................................................................................................................................................................CCATTGCAGGCTTTGTTAGAATTCCATTTTACATTTGTGTATCGGAAATCATGGTTTCGGGACTGAGGGCGAAAACTAGGAAAGGTCCCTCAGTTCAAGTAGATTATCTAATTCATATTCAGGAGATCAAACCTTGGCCTCCCTCGCAGTCATTGAAGTCGGTTCGTGCTATTGTGATCCAATGGGAAAATGGAGATAGGAATGGTTCTACTAGTCAAGTTGTCCCATTTTTAGGCTCTGGTGTTGGTGATGGAAGAATTGAGTTCAATGAGTCCTTTAAACTACCTGTGACACTACTGAAGGAAATTTCTAATAAAGGGGGTGATGGAAACAGTTTTCAAAAAAATTGCATGGAGTTCAACTTGTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E542327" ref_strand="+" ref_description="SGN-E542327 [TUS-63-J6]">
      <seq>caaccactgcaatgttctactctcctcctaaccattgcaggctttgttagaattccattttacatttgtgtatcggaaatcatggtttcgggactgagggcgaaaactaggaaaggtccctcagttcaagtagattatctaattcatattcaggagatcaaaccttggcctccctcgcagtcattgaagtcggttcgtgctattgtgatccaatgggaaaatggagataggaatggttctactagtcaagttgtcccatttttaggctctggtgttggtgatggaagaattgagttcaatgagtcctttaaactacctgtgacactactgaaggaaatttctaataaagggggtgatggaaacagttttcaaaaaaattgcatggagttcaacttgtatgaaccccgacgtgacaagacagtcaaaggtcaacccttaggaactgctgttatcaatttggctgaatatgctgttatcaaggagggtttgaatgtaagtgcccctattaattgcacaagggcttataggaacactacacaggcccttctcttcctgaaaatccagccatttgagaaaggtcgcgtcagctcctcatcttcaagtcacattttaacgagggaagtgtcaatagaccgtaatggtgttgaatctctgtctacattgacaagtgaagaatgtgctgaggaagctgagactgcctcatttaccgatgatgatggttcctcgcactcatcagttgctgtttcttcttcagctaatggatcgaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="+" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="77797" stop="79548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78097" g_stop="78127" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78128" i_stop="78510" i_length="383">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78511" g_stop="79248" g_length="738"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="769" r_length="738" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="+" ref_id="SGN-E542327" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>769</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78097" e_stop="78127"/>
          <exon e_start="78511" e_stop="79248"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACCACTGCAATGTTCTACTCTCCTCCTAAGTATGTCTCCTCCAAATCTCTATCTTTTTCTTTTTATGTCTGCAATGGCTTCATTTTTGTACTCTCCTTTGCTTCTTAACTTGGTTCTTTTATGAACATTTGATTTTGTTTTGTTTTCTAATTTCTATGGGCTATTGATTGGCTTAAGCATTTAAGGTGAGTGTTAAATAGACTCTCAATGTGCTCTTTTGAAGATTGACAATGAAAATATAAGCCTGATACTCTAATCACATTTATTCCACAAGTTCTACTCACCTACTGATGGTACTTTTTTTTTCCCCGCTGATTCCCTTGTCTTGCATTTATTGTGTTCAACAGTAGATTAGTCCAGTTTAGAAAAGATTAGTAGATTAGCCAAGGTAACAAGTTTGTTTTGTTTTTAGCCATTGCAGGCTTTGTTAGAATTCCATTTTACATTTGTGTATCGGAAATCATGGTTTCGGGACTGAGGGCGAAAACTAGGAAAGGTCCCTCAGTTCAAGTAGATTATCTAATTCATATTCAGGAGATCAAACCTTGGCCTCCCTCGCAGTCATTGAAGTCGGTTCGTGCTATTGTGATCCAATGGGAAAATGGAGATAGGAATGGTTCTACTAGTCAAGTTGTCCCATTTTTAGGCTCTGGTGTTGGTGATGGAAGAATTGAGTTCAATGAGTCCTTTAAACTACCTGTGACACTACTGAAGGAAATTTCTAATAAAGGGGGTGATGGAAACAGTTTTCAAAAAAATTGCATGGAGTTCAACTTGTATGAACCCCGACGTGACAAGACAGTCAAAGGTCAACCCTTAGGAACTGCTGTTATCAATTTGGCTGAATATGCTGTTATCAAGGAGGGTTTGAATGTAAGTGCCCCTATTAATTGCACAAGGGCTTATAGGAACACTACACAGGCCCTTCTCTTCCTGAAAATCCAGCCATTTGAGAAAGGTCGCGTCAGCTCCTCATCTTCAAGTCACATTTTAACGAGGGAAGTGTCAATAGACCGTAATGGTGTTGAATCTCTGTCTACATTGACAAGTGAAGAATGTGCTGAGGAAGCTGAGACTGCCTCATTTACCGATGATGATGGTTCCTCGCACTCATCAGTTGCTGTTTCTTCTTCAGCTAATGGATCGAACT</genome_strand>
        <mrna_strand>CAACCACTGCAATGTTCTACTCTCCTCCTAA...............................................................................................................................................................................................................................................................................................................................................................................................CCATTGCAGGCTTTGTTAGAATTCCATTTTACATTTGTGTATCGGAAATCATGGTTTCGGGACTGAGGGCGAAAACTAGGAAAGGTCCCTCAGTTCAAGTAGATTATCTAATTCATATTCAGGAGATCAAACCTTGGCCTCCCTCGCAGTCATTGAAGTCGGTTCGTGCTATTGTGATCCAATGGGAAAATGGAGATAGGAATGGTTCTACTAGTCAAGTTGTCCCATTTTTAGGCTCTGGTGTTGGTGATGGAAGAATTGAGTTCAATGAGTCCTTTAAACTACCTGTGACACTACTGAAGGAAATTTCTAATAAAGGGGGTGATGGAAACAGTTTTCAAAAAAATTGCATGGAGTTCAACTTGTATGAACCCCGACGTGACAAGACAGTCAAAGGTCAACCCTTAGGAACTGCTGTTATCAATTTGGCTGAATATGCTGTTATCAAGGAGGGTTTGAATGTAAGTGCCCCTATTAATTGCACAAGGGCTTATAGGAACACTACACAGGCCCTTCTCTTCCTGAAAATCCAGCCATTTGAGAAAGGTCGCGTCAGCTCCTCATCTTCAAGTCACATTTTAACGAGGGAAGTGTCAATAGACCGTAATGGTGTTGAATCTCTGTCTACATTGACAAGTGAAGAATGTGCTGAGGAAGCTGAGACTGCCTCATTTACCGATGATGATGGTTCCTCGCACTCATCAGTTGCTGTTTCTTCTTCAGCTAATGGATCGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E300196" ref_strand="+" ref_description="SGN-E300196 [cLEW-17-M23]">
      <seq>aaccactgcaatgttctactctcctcctaaccattgcaggctttgttagaattccattttacatttgtgtatcggaaatcatggtttcgggactgagggcgaaaactaggaaaggtccctcagttcaagtagattatctaattcatattcaggagatcaaaccttggcctccctcgcagtcattgaagtcggttcgtgctattgtgatccaatgggaaaatggagataggaatggttctactagtcaagttgtcccatttttaagctctggtgttggtgatggaagaattgagttcaatgagtcctttaaactacctgtgacactactgaaggaaatttctaataaagggggtgatggaaacagttttcaaaaaaattgcatggagttcaacttgtatgaaccccgacgtgacaagacagtcaaaggtcaacccttaagaactgctgttatcaatttggctgaatatgctgttatcaaagagggtttgaatgtaagtgcccctattaattgcacaaaggcttataggaacactacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="+" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="77798" stop="79317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78098" g_stop="78127" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78128" i_stop="78510" i_length="383">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78511" g_stop="79017" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="537" r_length="507" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="+" ref_id="SGN-E300196" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300196" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78098" e_stop="78127"/>
          <exon e_start="78511" e_stop="79017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCACTGCAATGTTCTACTCTCCTCCTAAGTATGTCTCCTCCAAATCTCTATCTTTTTCTTTTTATGTCTGCAATGGCTTCATTTTTGTACTCTCCTTTGCTTCTTAACTTGGTTCTTTTATGAACATTTGATTTTGTTTTGTTTTCTAATTTCTATGGGCTATTGATTGGCTTAAGCATTTAAGGTGAGTGTTAAATAGACTCTCAATGTGCTCTTTTGAAGATTGACAATGAAAATATAAGCCTGATACTCTAATCACATTTATTCCACAAGTTCTACTCACCTACTGATGGTACTTTTTTTTTCCCCGCTGATTCCCTTGTCTTGCATTTATTGTGTTCAACAGTAGATTAGTCCAGTTTAGAAAAGATTAGTAGATTAGCCAAGGTAACAAGTTTGTTTTGTTTTTAGCCATTGCAGGCTTTGTTAGAATTCCATTTTACATTTGTGTATCGGAAATCATGGTTTCGGGACTGAGGGCGAAAACTAGGAAAGGTCCCTCAGTTCAAGTAGATTATCTAATTCATATTCAGGAGATCAAACCTTGGCCTCCCTCGCAGTCATTGAAGTCGGTTCGTGCTATTGTGATCCAATGGGAAAATGGAGATAGGAATGGTTCTACTAGTCAAGTTGTCCCATTTTTAGGCTCTGGTGTTGGTGATGGAAGAATTGAGTTCAATGAGTCCTTTAAACTACCTGTGACACTACTGAAGGAAATTTCTAATAAAGGGGGTGATGGAAACAGTTTTCAAAAAAATTGCATGGAGTTCAACTTGTATGAACCCCGACGTGACAAGACAGTCAAAGGTCAACCCTTAGGAACTGCTGTTATCAATTTGGCTGAATATGCTGTTATCAAGGAGGGTTTGAATGTAAGTGCCCCTATTAATTGCACAAGGGCTTATAGGAACACTACAC</genome_strand>
        <mrna_strand>AACCACTGCAATGTTCTACTCTCCTCCTAA...............................................................................................................................................................................................................................................................................................................................................................................................CCATTGCAGGCTTTGTTAGAATTCCATTTTACATTTGTGTATCGGAAATCATGGTTTCGGGACTGAGGGCGAAAACTAGGAAAGGTCCCTCAGTTCAAGTAGATTATCTAATTCATATTCAGGAGATCAAACCTTGGCCTCCCTCGCAGTCATTGAAGTCGGTTCGTGCTATTGTGATCCAATGGGAAAATGGAGATAGGAATGGTTCTACTAGTCAAGTTGTCCCATTTTTAAGCTCTGGTGTTGGTGATGGAAGAATTGAGTTCAATGAGTCCTTTAAACTACCTGTGACACTACTGAAGGAAATTTCTAATAAAGGGGGTGATGGAAACAGTTTTCAAAAAAATTGCATGGAGTTCAACTTGTATGAACCCCGACGTGACAAGACAGTCAAAGGTCAACCCTTAAGAACTGCTGTTATCAATTTGGCTGAATATGCTGTTATCAAAGAGGGTTTGAATGTAAGTGCCCCTATTAATTGCACAAAGGCTTATAGGAACACTACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E737515" ref_strand="+" ref_description="SGN-E737515 [LC10AF11]">
      <seq>tcaacccttaggaactgctgttatcaatttggctgaatatgctgttatcaaggagggtttgaatgtaagtgcccctattaattgcacaagggcttataggaacactacacaggcccttctcttcctgaaaatccagccatttgagaaaggtcgcgtcagctcctcatcttcaagtcacattttaacgagggaagtgtcaatagaccgtaatggtgttgaatctctgtctacattgacaagtgaagaatgtgctgaggaagctgagactgcctcatttaccgatgatgatggttcctcgcactcatcagttgctgtttcttcttcagctaatggatcgaactgtggttcactaccacaaggagaggatgaagctgagggagtgaaaagtaatcctggacaacatgaagatgaacatctcctacattcaaagaaaaaatctgtagatttggatgagaagcaagtggtgaaatcattatctgatttgaagggaagtccatctccctcttcaactgatttgtcttctgacttggcatggctctcaaggaaaataggtggtagtggtagcaataaattctcaacctcaagtgagaatgaaataactgaaaactctcagaatccgcgggtgatgaccaaacatgttgaaccagaaagaatactggctaacagtgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="+" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="78608" stop="80184"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78908" g_stop="79271" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="364" r_length="364" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79272" i_stop="79578" i_length="307">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.685" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79579" g_stop="79884" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="670" r_length="306" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="+" ref_id="SGN-E737515" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737515" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78908" e_stop="79271"/>
          <exon e_start="79579" e_stop="79884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACCCTTAGGAACTGCTGTTATCAATTTGGCTGAATATGCTGTTATCAAGGAGGGTTTGAATGTAAGTGCCCCTATTAATTGCACAAGGGCTTATAGGAACACTACACAGGCCCTTCTCTTCCTGAAAATCCAGCCATTTGAGAAAGGTCGCGTCAGCTCCTCATCTTCAAGTCACATTTTAACGAGGGAAGTGTCAATAGACCGTAATGGTGTTGAATCTCTGTCTACATTGACAAGTGAAGAATGTGCTGAGGAAGCTGAGACTGCCTCATTTACCGATGATGATGGTTCCTCGCACTCATCAGTTGCTGTTTCTTCTTCAGCTAATGGATCGAACTGTGGTTCACTACCACAAGGAGAGGTATGACGCTTACTTTTCAATCTAGTTTTTTACTATGCCGAAGAATTCAGTTTATGTGATACGAGTACTTCCCTTCTGTTGCTTCCAAATTGCATGGCGCAAGGAACTTTTTCGGTTGTGTTTGTTTAGTACACACTTCGTATAGGAGATGGGACGTTATTTCATGATATCCCTTTTTATATTAAACACAACTATTTCTTGTGCACATGTGCTTGATGTAATTTATGGTAGTTAATGCGCGGCATTGCCAATTCTGTAAACAAAAATACAAAATACTGAGTAGCTTGACACCTAGCGATCATTACAGGATGAAGCTGAGGGAGTGAAAAGTAATCCTGGACAACATGAAGATGAACATCTCCTACATTCAAAGAAAAAATCTGTAGATTTGGATGAGAAGCAAGTGGTGAAATCATTATCTGATTTGAAGGGAAGTCCATCTCCCTCTTCAACTGATTTGTCTTCTGACTTGGCATGGCTCTCAAGGAAAATAGGTGGTAGTGGTAGCAATAAATTCTCAACCTCAAGTGAGAATGAAATAACTGAAAACTCTCAGAATCCGCGGGTGATGACCAAACATGTTGAACCAGAAAGAATACTGGCTAACAGTGAA</genome_strand>
        <mrna_strand>TCAACCCTTAGGAACTGCTGTTATCAATTTGGCTGAATATGCTGTTATCAAGGAGGGTTTGAATGTAAGTGCCCCTATTAATTGCACAAGGGCTTATAGGAACACTACACAGGCCCTTCTCTTCCTGAAAATCCAGCCATTTGAGAAAGGTCGCGTCAGCTCCTCATCTTCAAGTCACATTTTAACGAGGGAAGTGTCAATAGACCGTAATGGTGTTGAATCTCTGTCTACATTGACAAGTGAAGAATGTGCTGAGGAAGCTGAGACTGCCTCATTTACCGATGATGATGGTTCCTCGCACTCATCAGTTGCTGTTTCTTCTTCAGCTAATGGATCGAACTGTGGTTCACTACCACAAGGAGAG...................................................................................................................................................................................................................................................................................................................GATGAAGCTGAGGGAGTGAAAAGTAATCCTGGACAACATGAAGATGAACATCTCCTACATTCAAAGAAAAAATCTGTAGATTTGGATGAGAAGCAAGTGGTGAAATCATTATCTGATTTGAAGGGAAGTCCATCTCCCTCTTCAACTGATTTGTCTTCTGACTTGGCATGGCTCTCAAGGAAAATAGGTGGTAGTGGTAGCAATAAATTCTCAACCTCAAGTGAGAATGAAATAACTGAAAACTCTCAGAATCCGCGGGTGATGACCAAACATGTTGAACCAGAAAGAATACTGGCTAACAGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E332327" ref_strand="+" ref_description="SGN-E332327 [cTOD-17-P23]">
      <seq>aagaatgactcagaaaaaagtgacgtaaattctactgactctgagaatgctttcactcctcttggaaataggcatgaagatgcgagagctgttgttaccaagaatggttcttgtgagggtcaaaacagtgagaattatcaagagagggagaactatcaggaaaatgaacaagtacaagaaatagtcgaagaggaagaaagtgaggatgctatgaagaatgtctcagaagaaagtgatgtaaattctactgacacggacagttatggagcaaagagtagtatcctgaataatgagagattaaagcatgtaaagtcagttaggtcatcagcagaacctaatagagtaagagggtctgtcaggggcaatcaacttttagcacaagataaattgattagtactcaagatttaggaaatgagtggaaaaatcgaaatgcgcattcaacaattcttttggaaaacaaactccataagttggagcaaagagtaaagatggcagaaggagaattgagagaagctgctgcaattgaagttggcctctattcggttgttgcagagcatgggagttccacaaataaggtacatgctcctgcaagacgtctgtcgaggttctatttccatgcctgtaaagatgactctctattgaaaaggggatctgctgctaaaagtgctgtctctggattaattttgggttgcagagcatgtggaaatgatngtccaagttaactttctggttatcaaattcggtggtgctgagagcaactataagcaaattcccagcgcagctgtgtttgccccgtactactgaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="+" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="79933" stop="81953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80233" g_stop="80951" g_length="719"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="718" r_length="718" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80952" i_stop="81563" i_length="612">
            <donor d_prob="0.993" d_score="0.88"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81564" g_stop="81653" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="719" r_stop="808" r_length="90" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="+" ref_id="SGN-E332327" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>809</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80233" e_stop="80951"/>
          <exon e_start="81564" e_stop="81653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATGACTCAGAAAAAAGTGACGTAAATTCTACTGACTCTGAGAATGCTTTCACTCCTCTTGGAAATAGGCATGAAGATGCGAGAGCTGTTGTTACCAAGAATGGTTCTTGTGAGGGTCAAAACAGTGAGAATTATCAAGAGAGGGAGAACTATCAGGAAAATGAACAAGTACAAGAAATAGTCGAAGAGGAAGAAAGTGAGGATGCTATGAAGAATGTCTCAGAAGAAAGTGATGTAAATTCTACTGACACGGACAGTTATGGAGCAAAGAGTAGTATCCTGAATAATGAGAGATTAAAGCATGTAAAGTCAGTTAGGTCATCAGCAGAACCTAATAGAGTAAGAGGGTCTGTCAGGGGCAATCAACTTTTAGCACAAGATAAATTGATTAGTACTCAAGATTTAGGAAATGAGTGGAAAAATCGAAATGCGCATTCAACAATTCTTTTGGAAAACAAACTCCATAAGTTGGAGCAAAGAGTAAAGATGGCAGAAGGAGAATTGAGAGAAGCTGCTGCAATTGAAGTTGGCCTCTATTCGGTTGTTGCAGAGCATGGGAGTTCCACAAATAAGGTACATGCTCCTGCAAGACGTCTGTCGAGGTTCTATTTCCATGCCTGTAAAGATGACTCTCTATTGAAAAGGGGATCTGCTGCTAAAAGTGCTGTCTCTGGATTAATTTT-GGTTGCAAGAGCATGTGGAAATGATGTTCCAAGGTACTTCCTAGTTTACAATCATTTTTTGCATTTAGTAGCAGTTTTGTATTTTTCACCACCATACACATATAAGCTATAACACATTCTTACTAGAACAAGTTTTCAATAACAAGTACTCACTTTTGTTTCAGTTTGTTTGTCTGATTTTGACTTGACATGAAATTTAAGAAAGTAAAGGTACTTTTGAATATTGTGGTCTTAAACTAAAAATATGTAGAATTTACCAAAATGCTTTTTAATCTTGTAATCTTAAACATGCCAAAACTGGAATTAAAGAATAGCCAAAAAACAGAAGAAAGGTATTCTTTTTGAAACAGACTATGAAGGAAACTAAGAAAGCATATTGAACCAGAGGGAGTATTTTGATATGAAAACCTAGCTGCAACCATATAACAGTACTTTTGAAGTTCTTTCATACACTCATCTCCGAGCAACTTTGCAGACCTGTGATGGGTTATCTCTTGGTCTTAACATGAGTACACAACAAGCTATTTTTCAAAGGCTCAAGTACTATGATATCATCGCCTTTTATCATGGAAGGAAGCTAAGTTGTATGCCCAAGAAAGTATTTATGATTCCCCCTAATTATTCTTATTTTATGTCTGAGCACAGGTTAACTTTCTGGTTATCAAATTCGGTGGTGCTGAGAGCAACTATAAGCAAATTCCAGCGGCAGCTGTGTTTGCCCCGTACTACTGAAAC</genome_strand>
        <mrna_strand>AAGAATGACTCAGAAAAAAGTGACGTAAATTCTACTGACTCTGAGAATGCTTTCACTCCTCTTGGAAATAGGCATGAAGATGCGAGAGCTGTTGTTACCAAGAATGGTTCTTGTGAGGGTCAAAACAGTGAGAATTATCAAGAGAGGGAGAACTATCAGGAAAATGAACAAGTACAAGAAATAGTCGAAGAGGAAGAAAGTGAGGATGCTATGAAGAATGTCTCAGAAGAAAGTGATGTAAATTCTACTGACACGGACAGTTATGGAGCAAAGAGTAGTATCCTGAATAATGAGAGATTAAAGCATGTAAAGTCAGTTAGGTCATCAGCAGAACCTAATAGAGTAAGAGGGTCTGTCAGGGGCAATCAACTTTTAGCACAAGATAAATTGATTAGTACTCAAGATTTAGGAAATGAGTGGAAAAATCGAAATGCGCATTCAACAATTCTTTTGGAAAACAAACTCCATAAGTTGGAGCAAAGAGTAAAGATGGCAGAAGGAGAATTGAGAGAAGCTGCTGCAATTGAAGTTGGCCTCTATTCGGTTGTTGCAGAGCATGGGAGTTCCACAAATAAGGTACATGCTCCTGCAAGACGTCTGTCGAGGTTCTATTTCCATGCCTGTAAAGATGACTCTCTATTGAAAAGGGGATCTGCTGCTAAAAGTGCTGTCTCTGGATTAATTTTGGGTTGC-AGAGCATGTGGAAATGATNGTCCAA-....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAACTTTCTGGTTATCAAATTCGGTGGTGCTGAGAGCAACTATAAGCAAATTCCCAGCGCAGCTGTGTTTGCCCCGTACTACTGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E331052" ref_strand="+" ref_description="SGN-E331052 [cTOD-6-O21]">
      <seq>aagaatgactcagaaaaaagtgacgtaaattctactgactctgagaatgctttcactcctcttggaaataggcatgaagatgcgagagctgttgttaccaagaatggttcttgtgagggtcaaaacagtgagaattatcaagagagggagaactatcaggaaaatgaacaagtacaagaaatagtcgaagaggaagaaagtgaggatgctatgaagaatgtctcagaagaaagtgatgtaaattctactgacacggacagttatggagcaaagagtagtatcctgaataatgagagattaaagcatgtaaagtcagttaggtcatcagcagaacctaatagagtaagagggtctgtcaggggcaatcaacttttagcacaagataaattgattagtactcaagatttaggaaatgagtggaaaaatcgaaatgcgcattcaacaattcttttggaaaacaaactccataagttggagcaaagagtaaagatggcagaaggagaattgagagaagctgctgcaattgaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="+" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="79933" stop="81062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80233" g_stop="80762" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="530" r_length="530" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="+" ref_id="SGN-E331052" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331052" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80233" e_stop="80762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATGACTCAGAAAAAAGTGACGTAAATTCTACTGACTCTGAGAATGCTTTCACTCCTCTTGGAAATAGGCATGAAGATGCGAGAGCTGTTGTTACCAAGAATGGTTCTTGTGAGGGTCAAAACAGTGAGAATTATCAAGAGAGGGAGAACTATCAGGAAAATGAACAAGTACAAGAAATAGTCGAAGAGGAAGAAAGTGAGGATGCTATGAAGAATGTCTCAGAAGAAAGTGATGTAAATTCTACTGACACGGACAGTTATGGAGCAAAGAGTAGTATCCTGAATAATGAGAGATTAAAGCATGTAAAGTCAGTTAGGTCATCAGCAGAACCTAATAGAGTAAGAGGGTCTGTCAGGGGCAATCAACTTTTAGCACAAGATAAATTGATTAGTACTCAAGATTTAGGAAATGAGTGGAAAAATCGAAATGCGCATTCAACAATTCTTTTGGAAAACAAACTCCATAAGTTGGAGCAAAGAGTAAAGATGGCAGAAGGAGAATTGAGAGAAGCTGCTGCAATTGAAGT</genome_strand>
        <mrna_strand>AAGAATGACTCAGAAAAAAGTGACGTAAATTCTACTGACTCTGAGAATGCTTTCACTCCTCTTGGAAATAGGCATGAAGATGCGAGAGCTGTTGTTACCAAGAATGGTTCTTGTGAGGGTCAAAACAGTGAGAATTATCAAGAGAGGGAGAACTATCAGGAAAATGAACAAGTACAAGAAATAGTCGAAGAGGAAGAAAGTGAGGATGCTATGAAGAATGTCTCAGAAGAAAGTGATGTAAATTCTACTGACACGGACAGTTATGGAGCAAAGAGTAGTATCCTGAATAATGAGAGATTAAAGCATGTAAAGTCAGTTAGGTCATCAGCAGAACCTAATAGAGTAAGAGGGTCTGTCAGGGGCAATCAACTTTTAGCACAAGATAAATTGATTAGTACTCAAGATTTAGGAAATGAGTGGAAAAATCGAAATGCGCATTCAACAATTCTTTTGGAAAACAAACTCCATAAGTTGGAGCAAAGAGTAAAGATGGCAGAAGGAGAATTGAGAGAAGCTGCTGCAATTGAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E321509" ref_strand="+" ref_description="SGN-E321509 [cTOB-23-F10]">
      <seq>tctttctaccttctaaatgcattgagtgatcttatgatgcttccaaaggatatgcttttaagcaggacaatgagaaaagaggtatgtccggcacttggtcctttgctaataagaagggttcttaatatatttgttccagatgagttttgttgtgattcaatacctgaagcggtatttgaagttctctcagaggaaccttctgaggctgagggtgattctgttacaaactatccgtgcacagcagctcctgtggcttatatgccacctccaatagcttcagtagctggtatgttgggcgatgggtatagctattctatgttgacacgaagtgcatcttcagtgctcaaaaagtcatacacaagtgatgaggaacttgagctattggattcaccgttgaattttatcattagtgatggcactgaagcttcacattctttagtaaaacagagttccatgccaaaaaatagtggaaggcagaggtaccaactccttcgggaggtttggattaacagtgagtaaaatgagtagttgtggtgttaacagatttcttggttttcatctaaaggaagatagggatcgatgatgagagtatgatttgtggatatgagaagcacttgttatgcatcttcacgtgtagatattgtagggagtaggtgtctgtagaatatttgataaacttgaatgggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="+" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="82997" stop="84546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83297" g_stop="83377" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83378" i_stop="83460" i_length="83">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83461" g_stop="83571" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="192" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83572" i_stop="83749" i_length="178">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83750" g_stop="84246" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="688" r_length="496" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="+" ref_id="SGN-E321509" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321509" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83297" e_stop="83377"/>
          <exon e_start="83461" e_stop="83571"/>
          <exon e_start="83750" e_stop="84246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTCTACCTTCTAAATGCATTGAGTGATCTTATGATGCTTCCAAAGGATATGCTTTTAAGCAGGACAATGAGAAAAGAGGTTAGACTCAGAACCCAACCATTTGCTATTCTTTGTTTCTTTATTTTTTCCCCTCTTTGATAAGTTGCTGTTTGTTTCTTCAGGTATGTCCGGCACTTGGTCCTTTGCTAATAAGAAGGGTTCTTAATATATTTGTTCCAGATGAGTTTTGTTGTGATTCAATACCTGAAGCGGTATTTGAAGTTCTCTCAGAGGTAAATCTATGTCTTAATTCATTTTTTAAGCTTGAGTTTCAGCTTTATCTGGAAAATATTTTGTTGTTTATTTCCCTTGCTGGAAGTTGAAGCTAAGGTAGCAGCTGGAGTATAATGTCAAGCCTTATATCAATGAAGTAAGTCTTACAAGTCATTTTTTCCCCTTTTTTCTGGCTAGGAACCTTCTGAGGCTGAGGGTGATTCTGTTACAAACTATCCGTGCACAGCAGCTCCTGTGGCTTATATGCCACCTCCAATAGCTTCAGTAGCTGGTATGTTGGGCGATGGGTATAGCTATTCTATGTTGACACGAAGTGCATCTTCAGTGCTCAAAAAGTCATACACAAGTGATGAGGAACTTGAGCTATTGGATTCACCGTTGAATTTTATCATTAGTGATGGCACTGAAGCTTCACATTCTTTAGTAAAACAGAGTTCCATGCCAAAAAATAGTGGAAGGCAGAGGTACCAACTCCTTCGGGAGGTTTGGATTAACAGTGAGTAAAATGAGTAGTTGTGGTGTTAACAGATTTCTTGGTTTTCATCTAAAGGAAGATAGGGATCGATGATGAGAGTATGATTTGTGGATATGAGAAGCACTTGTTATGCATCTTCACGTGTAGATATTGTAGGAGTTAGGTGTCTGTAGAAATATTTGATAAACTTGAATGGGAA</genome_strand>
        <mrna_strand>TCTTTCTACCTTCTAAATGCATTGAGTGATCTTATGATGCTTCCAAAGGATATGCTTTTAAGCAGGACAATGAGAAAAGAG...................................................................................GTATGTCCGGCACTTGGTCCTTTGCTAATAAGAAGGGTTCTTAATATATTTGTTCCAGATGAGTTTTGTTGTGATTCAATACCTGAAGCGGTATTTGAAGTTCTCTCAGAG..................................................................................................................................................................................GAACCTTCTGAGGCTGAGGGTGATTCTGTTACAAACTATCCGTGCACAGCAGCTCCTGTGGCTTATATGCCACCTCCAATAGCTTCAGTAGCTGGTATGTTGGGCGATGGGTATAGCTATTCTATGTTGACACGAAGTGCATCTTCAGTGCTCAAAAAGTCATACACAAGTGATGAGGAACTTGAGCTATTGGATTCACCGTTGAATTTTATCATTAGTGATGGCACTGAAGCTTCACATTCTTTAGTAAAACAGAGTTCCATGCCAAAAAATAGTGGAAGGCAGAGGTACCAACTCCTTCGGGAGGTTTGGATTAACAGTGAGTAAAATGAGTAGTTGTGGTGTTAACAGATTTCTTGGTTTTCATCTAAAGGAAGATAGGGATCGATGATGAGAGTATGATTTGTGGATATGAGAAGCACTTGTTATGCATCTTCACGTGTAGATATTGTAGGGAGTAGGTGTCTGTAG-AATATTTGATAAACTTGAATGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E689416" ref_strand="+" ref_description="SGN-E689416 [t3_tus_84_K12]">
      <seq>catgggagtttccgcccgaacatttcttcgggctgcttcacgcaagtcggttcgggcctacggttcagctgttgcagctcactttgattacgacaatgaggaggatatggaggaaccatcaggatcagttccacgcagaggagtacagtggctgatcatgggtcatccaatgacgcagagacacgtgtacgcccaatggctgtccaaacttatggacgttccatatatttccatgggctctctcgtacctcaacaactcaaccctcactataacaagatatcaagtgttgtgaatgagggaaagcatgttccagaagaagttatttttggtttgttatcaaagaggctagaagaaggtcattgcagaggtgaaaacgggttcattttagatggaattcctcgtacaatgcttcaggctgaaatccttgacaaagttgtggacatagatttagttctgaatctcaagtgttccgtgtcaaagaatgatagaagcaatggaatttattcaactgaagatcaactccttaagagaggtaatttaatgtcttcaagggtcatggatggtggtgcctggaaagagaagcaatatgatcatgatgaacagatcaaacccttagaagaatattataggaagcagaaaaagctcctcaattatcaagtagcaggagggcctgctgaaacttggcaaggccttttggctgcattgcaacttcagcacatgatgagtgcagttggttcaacacagttgactgcaggatgctgatacgattctcctgtgttactttattctttttgcaagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="86151" stop="84217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85851" g_stop="85575" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85574" i_stop="85508" i_length="67">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85507" g_stop="85367" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="418" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85366" i_stop="85276" i_length="91">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85275" g_stop="85090" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="604" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85089" i_stop="84714" i_length="376">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84713" g_stop="84517" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="605" r_stop="801" r_length="197" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E689416" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689416" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85851" e_stop="85575"/>
          <exon e_start="85507" e_stop="85367"/>
          <exon e_start="85275" e_stop="85090"/>
          <exon e_start="84713" e_stop="84517"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCGGAGTTTCCGCCCGAACATTTCTTCGGGCTGCTTCAAGCAAGTCGGTTCGGGCCTACGGTTCAGCTGTTGCAGCTCACTTTGATTACGACAATGAGGAGGATATGGAGGAACCATCAGGATCAGTTCCACGCAGAGGAGTACAGTGGCTGATCATGGGTCATCCAATGACGCAGAGACACGTGTACGCCCAATGGCTGTCCAAACTTATGGACGTTCCATATATTTCCATGGGCTCTCTCGTACCTCAACAACTCAACCCTCACTATAACAAGGTATTTATTTATCTTTTAACAATATGACCAATATGCTTTTATTGAAATAATTTATGGTTGTATGAAGATATCAAGTGTTGTGAATGAGGGAAAGCATGTTCCAGAAGAAGTTATTTTTGGTTTGTTATCAAAGAGGCTAGAAGAAGGTCATTGCAGAGGTGAAAACGGGTTCATTTTAGATGGAATTCCTCGTACAATGCTTCAGGCTGTATGTATACCTCTCCCTCCTCACTTAAGGAAGGGCTCTTCATTTTTCTCATGAAAAATTGAGTCGGTTTTTCTGATATATCTTTATGTAGGAAATCCTTGACAAAGTTGTGGACATAGATTTAGTTCTGAATCTCAAGTGTTCCGTGTCAAAGAATGATAGAAGCAATGGAATTTATTCAACTGAAGATCAACTCCTTAAGAGAGGTAATTTAATGTCTTCAAGGGTCATGGATGGTGGTGCCTGGAAAGAGAAGCAATATGATCATGATGAACAGGTATCTGTCTGACATATTGTAAATTTTACAAGTTAACAATAACAGTAGCCAAGAAAACATTTGAGATTGCCTAGCAGTTCTGTTACTGTAAATATATGAACAAAAGATTTGTCACAAAAATTAAAAGCGTTCATGATCATCCATAGTTGGACTAATCATGCTGAAGAGTTTATATCACAATGTCAAAAGATATATCTCAAACCACTCAATTCAATATGCTTTCACATTTACTCTCTGCATGTGCTTCACAGATGATGAGCTTTATATATCTTAGTATGATTGTCACCATCTTGATGCAGAATCATTACTCATTGTTTTCTCAGTTGAACTACAAAGGCAACTAATACATGTTATTGTTCTGTATATTATTTTGAAGATCAAACCCTTAGAAGAATATTATAGGAAGCAGAAAAAGCTCCTCAATTATCAAGTAGCAGGAGGGCCTGCTGAAACTTGGCAAGGCCTTTTGGCTGCATTGCAACTTCAGCACATGATGAGTGCAGTTGGTTCAACACAGTTGACTGCAGGATGCTGATACGATTCTCCTGTGTTACTTAATTCTTTTTGCAAGTA</genome_strand>
        <mrna_strand>CATGGGAGTTTCCGCCCGAACATTTCTTCGGGCTGCTTCACGCAAGTCGGTTCGGGCCTACGGTTCAGCTGTTGCAGCTCACTTTGATTACGACAATGAGGAGGATATGGAGGAACCATCAGGATCAGTTCCACGCAGAGGAGTACAGTGGCTGATCATGGGTCATCCAATGACGCAGAGACACGTGTACGCCCAATGGCTGTCCAAACTTATGGACGTTCCATATATTTCCATGGGCTCTCTCGTACCTCAACAACTCAACCCTCACTATAACAAG...................................................................ATATCAAGTGTTGTGAATGAGGGAAAGCATGTTCCAGAAGAAGTTATTTTTGGTTTGTTATCAAAGAGGCTAGAAGAAGGTCATTGCAGAGGTGAAAACGGGTTCATTTTAGATGGAATTCCTCGTACAATGCTTCAGGCT...........................................................................................GAAATCCTTGACAAAGTTGTGGACATAGATTTAGTTCTGAATCTCAAGTGTTCCGTGTCAAAGAATGATAGAAGCAATGGAATTTATTCAACTGAAGATCAACTCCTTAAGAGAGGTAATTTAATGTCTTCAAGGGTCATGGATGGTGGTGCCTGGAAAGAGAAGCAATATGATCATGATGAACAG........................................................................................................................................................................................................................................................................................................................................................................................ATCAAACCCTTAGAAGAATATTATAGGAAGCAGAAAAAGCTCCTCAATTATCAAGTAGCAGGAGGGCCTGCTGAAACTTGGCAAGGCCTTTTGGCTGCATTGCAACTTCAGCACATGATGAGTGCAGTTGGTTCAACACAGTTGACTGCAGGATGCTGATACGATTCTCCTGTGTTACTTTATTCTTTTTGCAAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E334148" ref_strand="+" ref_description="SGN-E334148 [cTOD-21-C18]">
      <seq>gagtttccgcccgaacatttcttcgggctgcttcaagcaagtcggttcgggcctacggttcagctgttgcagctcactttgattacgacaatgaggaggatatggaggaaccatcaggatcagttccacgcagaggagtacagtggctgatcatgggtcatccaatgacgcagagacacgtgtacgcccaatggctgtccaaacttatggacgttccatatatttccatgggctctctcgtacctcaacaactcaaccctcactataacaagatatcaagtgttgtgaatgagggaaagcatgttccagaagaagttatttttggtttgttatcaaagaggctagaagaaggtcattgcagaggtgaaaacgggttcattttagatggaattcctcgtacaatgcttcaggctgaaatccttgacaaagttgtggacatagatttagttctgaatctcaagtgttccgtgtcaaagaatgatagaagcaatggaatttattcaactgaagatcaactccttaagagaggtaatttaatgtcttcaagggtcatggatggtggtgcctggaaagagaagcaatatgatcatgatgaacagatcaaacccttagaagaatattataggaagcagaaaaagctcctcaattatcaagtagcaggagggcctgctgaaacttggcaaggccttttggctgcattgcaacttcagcacatgatgagtgcagttggttcaacacagttgactgcaggatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="86146" stop="84256"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85846" g_stop="85575" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85574" i_stop="85508" i_length="67">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85507" g_stop="85367" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="413" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85366" i_stop="85276" i_length="91">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85275" g_stop="85090" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="599" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85089" i_stop="84714" i_length="376">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84713" g_stop="84556" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="757" r_length="158" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="SGN-E334148" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85846" e_stop="85575"/>
          <exon e_start="85507" e_stop="85367"/>
          <exon e_start="85275" e_stop="85090"/>
          <exon e_start="84713" e_stop="84556"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTTTCCGCCCGAACATTTCTTCGGGCTGCTTCAAGCAAGTCGGTTCGGGCCTACGGTTCAGCTGTTGCAGCTCACTTTGATTACGACAATGAGGAGGATATGGAGGAACCATCAGGATCAGTTCCACGCAGAGGAGTACAGTGGCTGATCATGGGTCATCCAATGACGCAGAGACACGTGTACGCCCAATGGCTGTCCAAACTTATGGACGTTCCATATATTTCCATGGGCTCTCTCGTACCTCAACAACTCAACCCTCACTATAACAAGGTATTTATTTATCTTTTAACAATATGACCAATATGCTTTTATTGAAATAATTTATGGTTGTATGAAGATATCAAGTGTTGTGAATGAGGGAAAGCATGTTCCAGAAGAAGTTATTTTTGGTTTGTTATCAAAGAGGCTAGAAGAAGGTCATTGCAGAGGTGAAAACGGGTTCATTTTAGATGGAATTCCTCGTACAATGCTTCAGGCTGTATGTATACCTCTCCCTCCTCACTTAAGGAAGGGCTCTTCATTTTTCTCATGAAAAATTGAGTCGGTTTTTCTGATATATCTTTATGTAGGAAATCCTTGACAAAGTTGTGGACATAGATTTAGTTCTGAATCTCAAGTGTTCCGTGTCAAAGAATGATAGAAGCAATGGAATTTATTCAACTGAAGATCAACTCCTTAAGAGAGGTAATTTAATGTCTTCAAGGGTCATGGATGGTGGTGCCTGGAAAGAGAAGCAATATGATCATGATGAACAGGTATCTGTCTGACATATTGTAAATTTTACAAGTTAACAATAACAGTAGCCAAGAAAACATTTGAGATTGCCTAGCAGTTCTGTTACTGTAAATATATGAACAAAAGATTTGTCACAAAAATTAAAAGCGTTCATGATCATCCATAGTTGGACTAATCATGCTGAAGAGTTTATATCACAATGTCAAAAGATATATCTCAAACCACTCAATTCAATATGCTTTCACATTTACTCTCTGCATGTGCTTCACAGATGATGAGCTTTATATATCTTAGTATGATTGTCACCATCTTGATGCAGAATCATTACTCATTGTTTTCTCAGTTGAACTACAAAGGCAACTAATACATGTTATTGTTCTGTATATTATTTTGAAGATCAAACCCTTAGAAGAATATTATAGGAAGCAGAAAAAGCTCCTCAATTATCAAGTAGCAGGAGGGCCTGCTGAAACTTGGCAAGGCCTTTTGGCTGCATTGCAACTTCAGCACATGATGAGTGCAGTTGGTTCAACACAGTTGACTGCAGGATGCTG</genome_strand>
        <mrna_strand>GAGTTTCCGCCCGAACATTTCTTCGGGCTGCTTCAAGCAAGTCGGTTCGGGCCTACGGTTCAGCTGTTGCAGCTCACTTTGATTACGACAATGAGGAGGATATGGAGGAACCATCAGGATCAGTTCCACGCAGAGGAGTACAGTGGCTGATCATGGGTCATCCAATGACGCAGAGACACGTGTACGCCCAATGGCTGTCCAAACTTATGGACGTTCCATATATTTCCATGGGCTCTCTCGTACCTCAACAACTCAACCCTCACTATAACAAG...................................................................ATATCAAGTGTTGTGAATGAGGGAAAGCATGTTCCAGAAGAAGTTATTTTTGGTTTGTTATCAAAGAGGCTAGAAGAAGGTCATTGCAGAGGTGAAAACGGGTTCATTTTAGATGGAATTCCTCGTACAATGCTTCAGGCT...........................................................................................GAAATCCTTGACAAAGTTGTGGACATAGATTTAGTTCTGAATCTCAAGTGTTCCGTGTCAAAGAATGATAGAAGCAATGGAATTTATTCAACTGAAGATCAACTCCTTAAGAGAGGTAATTTAATGTCTTCAAGGGTCATGGATGGTGGTGCCTGGAAAGAGAAGCAATATGATCATGATGAACAG........................................................................................................................................................................................................................................................................................................................................................................................ATCAAACCCTTAGAAGAATATTATAGGAAGCAGAAAAAGCTCCTCAATTATCAAGTAGCAGGAGGGCCTGCTGAAACTTGGCAAGGCCTTTTGGCTGCATTGCAACTTCAGCACATGATGAGTGCAGTTGGTTCAACACAGTTGACTGCAGGATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E721460" ref_strand="+" ref_description="SGN-E721460 [FC13DH12]">
      <seq>aatcggccgaattgaccaaaacatcatacttcttcatggcggaatacaaacagcaccaacgcctatttgaccgttttgatgagaacagagacgggaaaatatctgccgaggagcttcaacagtgtgtgcatttgattggcaaagacatgtcatatgaggaagcaaaggctgctgttgagcataatgattcagacaatgatggcttgttggattttgaagattttgtgagattaattgaaggtggaagtgaagaagagaaggcgcacgagttgaaggaggcgttcaagatgtatgaaatggaagggtgtggatgcataacgcctgagagtttgaatagaatgctttctagattgggagaatcaacaacaattgatgaatgcagaggaatgatttgccgctatgatattgatggcgatggtctccttaattttcatgagtttgagatcatgatgcgttgctagtactcgtcactcaactaatacttattactatctctatctcataaagtgatcactcttcagttaagacacctagttgctactttgtctcattgttttgtttctgctttatttgattctttcagtctttaattggttgatcactcattctttctgtatattctctaaaaccaggttacatatgtttatttgtaatttctccattagtacccatattttgtgctttacatgtttgtaacactactactatgattaatgatctgtaatatatgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="+" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="87076" stop="88402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87369" g_stop="88102" g_length="734"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="733" r_length="733" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="+" ref_id="SGN-E721460" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E721460" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87369" e_stop="88102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCTTTCTATTTGCACCAAAACATCATATTTCTTCATGGCGGAATACAAACAGCACCAACGCCTATTTGACCGTTTTGATGAGAACAGAGACGGGAAAATATCTGCCGAGGAGCTTCAACAGTGTGTGCATTTGATTGGCAAAGACATGTCATATGAGGAAGCAAAGGCTGCTGTTGAGCATAATGATTCAGACAATGATGGCTTGTTGGATTTTGAAGATTTTGTGAGATTAATTGAAGGTGGAAGTGAAGAAGAGAAGGCGCACGAGTTGAAGGAGGCGTTCAAGATGTATGAAATGGAAGGGTGTGGATGCATAACGCCTGAGAGTTTGAATAGAATGCTTTCTAGATTGGGAGAATCAACAACAATTGATGAATGCAGAGGAATGATTTGCCGCTATGATATTGATGGCGATGGTCTCCTTAATTTTCATGAGTTTGAGATCATGATGCGTTGCTAGTACTCGTCACTCAACTAATACTTATTACTATCTCTATCTCATAAAGTGATCACTCTTCAGTTAAGACACCTAGTTGCTACTTTGTCTCATTGTTTTGTTTCTGCTTTATTTGATTCTTTCAGTCTTTAATTGGTTGATCACTCATTCTTTCTGTATATTCTCTAAAACCAGGTTACATATGTTTATTTGTAATTTCTCCATTAGTACCCATATTTTGTGCTTTACATGTTTGTAACACTACTACTATGATTAATGATCTGTAATATATGTTT</genome_strand>
        <mrna_strand>AATCGGCCGAATTG-ACCAAAACATCATACTTCTTCATGGCGGAATACAAACAGCACCAACGCCTATTTGACCGTTTTGATGAGAACAGAGACGGGAAAATATCTGCCGAGGAGCTTCAACAGTGTGTGCATTTGATTGGCAAAGACATGTCATATGAGGAAGCAAAGGCTGCTGTTGAGCATAATGATTCAGACAATGATGGCTTGTTGGATTTTGAAGATTTTGTGAGATTAATTGAAGGTGGAAGTGAAGAAGAGAAGGCGCACGAGTTGAAGGAGGCGTTCAAGATGTATGAAATGGAAGGGTGTGGATGCATAACGCCTGAGAGTTTGAATAGAATGCTTTCTAGATTGGGAGAATCAACAACAATTGATGAATGCAGAGGAATGATTTGCCGCTATGATATTGATGGCGATGGTCTCCTTAATTTTCATGAGTTTGAGATCATGATGCGTTGCTAGTACTCGTCACTCAACTAATACTTATTACTATCTCTATCTCATAAAGTGATCACTCTTCAGTTAAGACACCTAGTTGCTACTTTGTCTCATTGTTTTGTTTCTGCTTTATTTGATTCTTTCAGTCTTTAATTGGTTGATCACTCATTCTTTCTGTATATTCTCTAAAACCAGGTTACATATGTTTATTTGTAATTTCTCCATTAGTACCCATATTTTGTGCTTTACATGTTTGTAACACTACTACTATGATTAATGATCTGTAATATATGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E711331" ref_strand="+" ref_description="SGN-E711331 [FB01CH05]">
      <seq>catttcttcatggcggaatacaaacagcaccaacgcctatttgaccgttttgatgagaacagagacgggaaaatatctgccgaggagcttcaacagtgtgtgcatttgattggcaaagacatgtcatatgaggaagcaaaggctgctgttgagcataatgattcagacaatgatggcttgttggattttgaagattttgtgagattaattgaaggtggaagtgaagaagagaaggcgcacgagttgaaggaggcgttcaagatgtatgaaatggaagggtgtggatgcataacgcctgagagtttgaatagaatgctttctagattgggagaatcaacaacaattgatgaatgcagaggaatgatttgccgctatgatattgatggcgatggtctccttaattttcatgagtttgagatcatgatgcgttgctagtactcgtcactcaactaatacttattactatctctatctcataaagtgatcactcttcagttaagacacctagttgctactttgtctcattgttttgtttctgctttatttgattctttcagtctttaattggttgatcactcattctttctgtatattctctaaaaccaggttacatatgtttatttgtaatttctccattagtacccatattttgtgctttacatgtttgtaacactactactatgattaatgatctgtaatatatgtttcatttttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="+" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="87097" stop="88408"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87396" g_stop="88108" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="713" r_length="713" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="715" polyA_stop="725"/>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="+" ref_id="SGN-E711331" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87396" e_stop="88108"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTCTTCATGGCGGAATACAAACAGCACCAACGCCTATTTGACCGTTTTGATGAGAACAGAGACGGGAAAATATCTGCCGAGGAGCTTCAACAGTGTGTGCATTTGATTGGCAAAGACATGTCATATGAGGAAGCAAAGGCTGCTGTTGAGCATAATGATTCAGACAATGATGGCTTGTTGGATTTTGAAGATTTTGTGAGATTAATTGAAGGTGGAAGTGAAGAAGAGAAGGCGCACGAGTTGAAGGAGGCGTTCAAGATGTATGAAATGGAAGGGTGTGGATGCATAACGCCTGAGAGTTTGAATAGAATGCTTTCTAGATTGGGAGAATCAACAACAATTGATGAATGCAGAGGAATGATTTGCCGCTATGATATTGATGGCGATGGTCTCCTTAATTTTCATGAGTTTGAGATCATGATGCGTTGCTAGTACTCGTCACTCAACTAATACTTATTACTATCTCTATCTCATAAAGTGATCACTCTTCAGTTAAGACACCTAGTTGCTACTTTGTCTCATTGTTTTGTTTCTGCTTTATTTGATTCTTTCAGTCTTTAATTGGTTGATCACTCATTCTTTCTGTATATTCTCTAAAACCAGGTTACATATGTTTATTTGTAATTTCTCCATTAGTACCCATATTTTGTGCTTTACATGTTTGTAACACTACTACTATGATTAATGATCTGTAATATATGTTTCATTTT</genome_strand>
        <mrna_strand>CATTTCTTCATGGCGGAATACAAACAGCACCAACGCCTATTTGACCGTTTTGATGAGAACAGAGACGGGAAAATATCTGCCGAGGAGCTTCAACAGTGTGTGCATTTGATTGGCAAAGACATGTCATATGAGGAAGCAAAGGCTGCTGTTGAGCATAATGATTCAGACAATGATGGCTTGTTGGATTTTGAAGATTTTGTGAGATTAATTGAAGGTGGAAGTGAAGAAGAGAAGGCGCACGAGTTGAAGGAGGCGTTCAAGATGTATGAAATGGAAGGGTGTGGATGCATAACGCCTGAGAGTTTGAATAGAATGCTTTCTAGATTGGGAGAATCAACAACAATTGATGAATGCAGAGGAATGATTTGCCGCTATGATATTGATGGCGATGGTCTCCTTAATTTTCATGAGTTTGAGATCATGATGCGTTGCTAGTACTCGTCACTCAACTAATACTTATTACTATCTCTATCTCATAAAGTGATCACTCTTCAGTTAAGACACCTAGTTGCTACTTTGTCTCATTGTTTTGTTTCTGCTTTATTTGATTCTTTCAGTCTTTAATTGGTTGATCACTCATTCTTTCTGTATATTCTCTAAAACCAGGTTACATATGTTTATTTGTAATTTCTCCATTAGTACCCATATTTTGTGCTTTACATGTTTGTAACACTACTACTATGATTAATGATCTGTAATATATGTTTCATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E214357" ref_strand="+" ref_description="SGN-E214357 [cLEC-77-K15]">
      <seq>ttcatggcggaatacaaacagcaccaacgcctatttgaccgttttgatgagaacagagacgggaaaatatctgccgaggagcttcaacagtgtgtgcatttgattggcaaagacatgtcatatgaggaagcaaaggctgctgttgagcataatgattcagacaatgatggcttgttggattttgaagattttgtgagattaattgaaggtggaagtgaagaagagaaggcgcacgagttgaaggaggcgttcaagatgtatgaaatggaagggtgtggatgcataacgcctgagagtttgaatagaatgctttctagattgggagaatcaacaacaattgatgaatgcagaggaatgatttgccgctatgatattgatggcgatggtctccttaattttcatgagtttgagatcatgatgcgttgctagtactcgtcactcaactaatacttattactatctctatctcataaagtgatcactcttcagttaagacacctagttgctactttgtctcattgttttgtttctgctttatttgattctttcagtctttaattggttgatcactcattctttctgtatattctctaaaacaggttacatatgtttatttgtaatttctcccatagtacccatattttgtgctttacatgtttgtaacactactactatgattaatgatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="+" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="87102" stop="88389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87402" g_stop="88089" g_length="688"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="687" r_length="687" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="+" ref_id="SGN-E214357" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87402" e_stop="88089"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATGGCGGAATACAAACAGCACCAACGCCTATTTGACCGTTTTGATGAGAACAGAGACGGGAAAATATCTGCCGAGGAGCTTCAACAGTGTGTGCATTTGATTGGCAAAGACATGTCATATGAGGAAGCAAAGGCTGCTGTTGAGCATAATGATTCAGACAATGATGGCTTGTTGGATTTTGAAGATTTTGTGAGATTAATTGAAGGTGGAAGTGAAGAAGAGAAGGCGCACGAGTTGAAGGAGGCGTTCAAGATGTATGAAATGGAAGGGTGTGGATGCATAACGCCTGAGAGTTTGAATAGAATGCTTTCTAGATTGGGAGAATCAACAACAATTGATGAATGCAGAGGAATGATTTGCCGCTATGATATTGATGGCGATGGTCTCCTTAATTTTCATGAGTTTGAGATCATGATGCGTTGCTAGTACTCGTCACTCAACTAATACTTATTACTATCTCTATCTCATAAAGTGATCACTCTTCAGTTAAGACACCTAGTTGCTACTTTGTCTCATTGTTTTGTTTCTGCTTTATTTGATTCTTTCAGTCTTTAATTGGTTGATCACTCATTCTTTCTGTATATTCTCTAAAACCAGGTTACATATGTTTATTTGTAATTTCTCCATTAGTACCCATATTTTGTGCTTTACATGTTTGTAACACTACTACTATGATTAATGATCT</genome_strand>
        <mrna_strand>TTCATGGCGGAATACAAACAGCACCAACGCCTATTTGACCGTTTTGATGAGAACAGAGACGGGAAAATATCTGCCGAGGAGCTTCAACAGTGTGTGCATTTGATTGGCAAAGACATGTCATATGAGGAAGCAAAGGCTGCTGTTGAGCATAATGATTCAGACAATGATGGCTTGTTGGATTTTGAAGATTTTGTGAGATTAATTGAAGGTGGAAGTGAAGAAGAGAAGGCGCACGAGTTGAAGGAGGCGTTCAAGATGTATGAAATGGAAGGGTGTGGATGCATAACGCCTGAGAGTTTGAATAGAATGCTTTCTAGATTGGGAGAATCAACAACAATTGATGAATGCAGAGGAATGATTTGCCGCTATGATATTGATGGCGATGGTCTCCTTAATTTTCATGAGTTTGAGATCATGATGCGTTGCTAGTACTCGTCACTCAACTAATACTTATTACTATCTCTATCTCATAAAGTGATCACTCTTCAGTTAAGACACCTAGTTGCTACTTTGTCTCATTGTTTTGTTTCTGCTTTATTTGATTCTTTCAGTCTTTAATTGGTTGATCACTCATTCTTTCTGTATATTCTCTAAAA-CAGGTTACATATGTTTATTTGTAATTTCTCCCATAGTACCCATATTTTGTGCTTTACATGTTTGTAACACTACTACTATGATTAATGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E235897" ref_strand="+" ref_description="SGN-E235897 [cLED-16-I10]">
      <seq>catggcggaatacaaacagcaccaacgcctatttgaccgttttgatgagaacagagacgggaaaatatctgccgaggagcttcaacagtgtgtgcatttgattggcaaagacatgtcatatgaggaagcaaaggctgctgttgagcataatgattcagacaatgatggcttgttggattttgaagattttgtgagattaattgaaggtggaagtgaagaagagaaggcgcacgagttgaaggaggcgttcaagatgtatgaaatggaagggtgtggatgcataacgcctgagagtttgaatagaatgctttctagattgggagaatcaacaacaattgatgaatgcagaggaatgatttgccgctatgatattgatggcgatggtctccttaattttcatgagtttgagatcatgatgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="+" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="87104" stop="88123"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87404" g_stop="87823" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="+" ref_id="SGN-E235897" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235897" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87404" e_stop="87823"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGCGGAATACAAACAGCACCAACGCCTATTTGACCGTTTTGATGAGAACAGAGACGGGAAAATATCTGCCGAGGAGCTTCAACAGTGTGTGCATTTGATTGGCAAAGACATGTCATATGAGGAAGCAAAGGCTGCTGTTGAGCATAATGATTCAGACAATGATGGCTTGTTGGATTTTGAAGATTTTGTGAGATTAATTGAAGGTGGAAGTGAAGAAGAGAAGGCGCACGAGTTGAAGGAGGCGTTCAAGATGTATGAAATGGAAGGGTGTGGATGCATAACGCCTGAGAGTTTGAATAGAATGCTTTCTAGATTGGGAGAATCAACAACAATTGATGAATGCAGAGGAATGATTTGCCGCTATGATATTGATGGCGATGGTCTCCTTAATTTTCATGAGTTTGAGATCATGATGCG</genome_strand>
        <mrna_strand>CATGGCGGAATACAAACAGCACCAACGCCTATTTGACCGTTTTGATGAGAACAGAGACGGGAAAATATCTGCCGAGGAGCTTCAACAGTGTGTGCATTTGATTGGCAAAGACATGTCATATGAGGAAGCAAAGGCTGCTGTTGAGCATAATGATTCAGACAATGATGGCTTGTTGGATTTTGAAGATTTTGTGAGATTAATTGAAGGTGGAAGTGAAGAAGAGAAGGCGCACGAGTTGAAGGAGGCGTTCAAGATGTATGAAATGGAAGGGTGTGGATGCATAACGCCTGAGAGTTTGAATAGAATGCTTTCTAGATTGGGAGAATCAACAACAATTGATGAATGCAGAGGAATGATTTGCCGCTATGATATTGATGGCGATGGTCTCCTTAATTTTCATGAGTTTGAGATCATGATGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E242122" ref_strand="-" ref_description="SGN-E242122 [cLED-37-G22]">
      <seq>taattttcatgagtttgagatcatgatgcgttgctagtactcgtcactcaactaatacttattactatctctatctcataaagtgatcactcttcagttaagacacctagttgctactttgtctcattgttttgtttctgctttatttgattctttcagtctttaattggttgatcactcattctttctgtatattctctaaaaccaggttacatatgtttatttgtaatttctccattagtacccatattttgtgctttacatgtttgtaacactactactatgattaatgatctgtaatatatgtttcattttaaaaaaaaaaaaaaaaaaaaaanccgagactagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="+" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="87494" stop="99854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87794" g_stop="88109" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="316" r_length="316" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88110" i_stop="88684" i_length="575">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.445" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88685" g_stop="88689" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="321" r_length="5" r_score="0.400"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88690" i_stop="91205" i_length="2516">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.850" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91206" g_stop="91227" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="343" r_length="22" r_score="0.545"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91228" i_stop="91680" i_length="453">
            <donor d_prob="0.304" d_score="0.00"/>
            <acceptor a_prob="0.526" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91681" g_stop="91690" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="353" r_length="10" r_score="0.700"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="+" ref_id="SGN-E242122" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>353</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242122" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="87794" e_stop="88109"/>
          <exon e_start="88685" e_stop="88689"/>
          <exon e_start="91206" e_stop="91227"/>
          <exon e_start="91681" e_stop="91690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTTTCATGAGTTTGAGATCATGATGCGTTGCTAGTACTCGTCACTCAACTAATACTTATTACTATCTCTATCTCATAAAGTGATCACTCTTCAGTTAAGACACCTAGTTGCTACTTTGTCTCATTGTTTTGTTTCTGCTTTATTTGATTCTTTCAGTCTTTAATTGGTTGATCACTCATTCTTTCTGTATATTCTCTAAAACCAGGTTACATATGTTTATTTGTAATTTCTCCATTAGTACCCATATTTTGTGCTTTACATGTTTGTAACACTACTACTATGATTAATGATCTGTAATATATGTTTCATTTTACCTTTGGGGTGTCCTTTGATTCAACAACTTTGTATTAAAAAGTAGGAACATATATTGAGAAATGAACTGAAAATTGATTGACAAAAGTAGCTACATAAGAAGATGACTATTGATTAAAAGTAGCTATATAGTTACTCAAGTACATACTATTTACAAGTAACAGTAATAATATGCAGAATAAACTCTCTTCTCCTATTTTGCCTTGAGTACATAGGAAATCCAGAAATTATGACTCATAAAAACCTTACAACAAGTTGAACACTGGCCAGTTTACAATTCACAGAATCACATGGAAGTACTGGTGGCTTCAGCCTTGAACAAAGGTTTGCAAGAGCTTTCGGAGATTATGAGTTGCTCCTCCCCTTCCAGTAATTTTTCTTCAACCAATCTTGACAACTTCTTCACAATTTCACCAGCATTTGGTCTTAATGACGGCTCTTCCTCCACACATGCTCTAGCCAAATTTGCCAATGTCACTGCTGCATCAAATGAATAATTCTCTCCCAACGCGCTGTCCACCCATTCCCTTAGCTCATCCACATTCTCTGACTCCAAAATAACCTTTATTTTCTCAGAGAGGGCAACTTCATCTTCTCCTTCAGTAACATTTCTAATTCTTATAGGTGTTTGGCCTGATAACACCTCAAGTAATATCACCCCGAAAGCAAAGATATCAATGCTCGGGGCAATGATTTCTTGTTTAAGACACTCTGGAGCCAGGTAACCTTTTGCAACATCATCTTCAACACATCGAGCCATACCAAAATTACCAACTTTAGCCTTGAACTCTTCATCAAGAAGTATGTTCCGGCTCTTTATATTTCGATGAACATAAACAGGATCCATGATATGGTGCATAAATTGTAAGGCAGTGGCTACATCTAAACAGATCCTTAGCCTCTGATTCCATGTCAAGAAACAATCACATGAAGCAATGAATTGATTTTTCATTGCTAGACCACCATGAAGCCAATCCTTCAATGAACCATTTTTCGCGTATTCAAACACCAAGAATGAATCAGGACCCTCTGTAACACACGTCCCTAAGAGCCTAATGATATTTGGGTGATGATGAATTGCATCATTGAATAGCCCGAAATCTATTTTTGAGATACTGCTAGTCTCCATCTGTTTGATTGCCAAATTTTTACCACTGATACGGCCATGGAATACAGAATCCTCGATAAGATTCGAGGAATCAAATTCCTCTGTTGCCTTCTTTATCTCCTCAATAGTATAGGTCTCAACGAACAACTTATGTGGTGTGGCATCAATAATCTGACCATCAAGATCATTTTGAGACCCATCGAATGAAACTTTTTTTTCGCTCGTAGTTCTCACACTCAAACTTAACTTTTGTAGCTCCGTATCTCTTTCCTTACTCAAAATATCCCCTTTCCTCTTGAGAAAATAAAACAAGAAAACTGCTGGAAGCGCAAAAATTGCCACGAAGACAACCAAAGCAACAGCAATATAAACTCTCATCATCCGCATTTTGGTCTTCTTCTTATGTATTTTGGATGACGCAATACTTGCTGCTGGATATCCCAAATTCGGTTGCTGAGGTTTCGTGAATGATCCAAGTTTGGGTTTACCTGTTGATACATGATATAATTAAGTAACCAAGGAGGCATGTTGAGACATAAATAATGTAATTAAATGTTACCTTCGAGAGGGATCAAAAGTGTTGAAGCTGGTGAAAGTCCATTAGTTCTAAAACTAGCTCCTTGTGATCTTCGATTGACATCAATTATTCTATCAACAGTCGTATTGAAGCTGACTGCCAAGGCTGCAATCGTATCGCCTTGCTTCACAGGGTATGAGAGCAGAAGTTTCGTCCGCAGAGTAATTTCTTGTGGTGAAGGACAAGCACATCTCAATGGAATCGACAAGAGAGTTTTCTCAGAGAGACCCCAAGGAGTAACATTTGGATTTTTCTCCTGAATTGCTTTACAAGTCGTTAAACCTTCCAAAGATTGAGCAATGCTGTAAAAGCTCTCACCTTTAGTGGTGGTTTTCCTTAGCTCTGATTCAAAGAAACCACCAATGCATTTACAATCTAATGGAATTATTAAAGGCTGATCAGTTGCAAGAAACTCTGTATCTGGAGAAAATCCATTTGCTTCTCGGAGAAGGTATTGATTGATACCTAAATAAGAGCTCAGATTGAAAAGAGAGTCGTATAATGAATTAGTCCGAAGAATCCCAAATGTCCCGCATTGTAACAGATGCACGTTACGGTCACATCGATAGCCAGAAGCAGATGGAGATTTGGAATCGCAGCTTAATAAGTCCTCTCCATGAGCAGAAAGAGTAATAAATAGAAAGAAAAATACGAAAGCCCAGAATTGAAAAGCGACTATCATAGTTTAACTAATTGAGTGAAGGACCACTCTATGGAAGGGCATAAAAAGGTTGGTCTATGGCAGGGCAAAGAAATGAATATTTTGGATCTGTACAAATCGGCGTATATAAAGTAGAATATTTCGGACAAGAATCTTGGATGCTACAATTCTTATTTTATATTTTTGAGTCTGCACTACTCTTTGAGATTGTTTGGAAATTATGCTAGTGTTAATAATGTATGTTGTATTAGTTATTTCATCTTCTACTCAGCATAAATTAGTACATCAATTCACTCCTATTAATTATGTCAATTTCTAAAATTACAAATCGAGCGTCACGTGAACTTTATAACTCCAATAGCTACCAAACAACCCCTATGTACATTTGAAATGGCTATCCGTCATGATTATCCCCTCAACCACCTTAACATATTCTTTTTGGTTTTTGAAACTTTATATTTATTTATGCGCATACATGAACTTGGAAAAAGGTCATCTTGCCTTGGAAGAATATTGAGCAACAAGTGAATGTACAAACATTGGGGTAAGGAAAGCAAATGAAAATCTGTTAAAAGTTTAGAAAACCAAGTTACTAGTAAATTAATTGACCAGTGGGGCGGTCGGGAAGACCCCTCGTATGGCTAAATATATGTTTGTCAATTGTTATAGAAGAAGAGAGGGAGGGGGATAGCTGATGAAATTTTCTATATTGAATTGAGCACATTGAAAACAGTTATATGTGTGTATAAAGAAAAACAAGAAGGGTTAACCAGGTAATGGAAAAATCAAATTTGGTCAGAATGGTAAATAACATATTTTACATTATGTTTTGTTATTTTACGTTTTTTTTTAATTTTTATCCTTCAATTTTAATATCTTTTAACTTATAAATGAAAAAAAGATCAGTTTTTATTTTAAAACAAAAAAGATATTATAGACTTTTTAAATTTCTGATCAAATTTTCTGACCATTTAGCATTATTACGTAATAGGATATTAGGTTAGTATCTGAGTGATTGTGTGCAGGAGACGAATAGGTAGTTGAGTGTCTCAACATCCGATCATATTGGTAATTGTAGTATTTCACTAGTAATTTTTTGTCCTTCAGTTATTATGATACTAAATGTGTTTTTTTGTATTTCGATTATTTTATTATTATATTGTAGTGATTATTCAGCATACCACGTTATTCTCACTTTTGTTACTTCTTTTTCTGAACTATTTTAGACTGTTTTTC</genome_strand>
        <mrna_strand>TAATTTTCATGAGTTTGAGATCATGATGCGTTGCTAGTACTCGTCACTCAACTAATACTTATTACTATCTCTATCTCATAAAGTGATCACTCTTCAGTTAAGACACCTAGTTGCTACTTTGTCTCATTGTTTTGTTTCTGCTTTATTTGATTCTTTCAGTCTTTAATTGGTTGATCACTCATTCTTTCTGTATATTCTCTAAAACCAGGTTACATATGTTTATTTGTAATTTCTCCATTAGTACCCATATTTTGTGCTTTACATGTTTGTAACACTACTACTATGATTAATGATCTGTAATATATGTTTCATTTTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAANCCGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAGTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E394033" ref_strand="+" ref_description="SGN-E394033 [TUS-14-A14]">
      <seq>aattttttaagatagaactctcccattttctccattacgaattacaataattttggtattgaaagccccacaattttcctatgatattttgctctccactctgttctgttctgctatcgggcatttcaacaatttgtcccttctttgccgaaccgtagcgctcccttttactgcattttctcctacgactttcatctaggttcttacaggcatctcggtggtacaaatcaagtgttttctgttaccaatgggttcatctgcttcagtgcataaagatcccaaatcagcaatgaagctccgttttgtctttgcatctaaatctgacaagcttgtgagtccctcacctatcaaagataaaccccttgatactgctgaaatcaaactctctcttcctcaaatcaaacctcagcgtggggcggtgctcccgcttaacagttttagcgactatggtagcaaggaggaggccttttttgattcccaggcctggttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="+" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="103977" stop="106517"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104277" g_stop="104725" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="449" r_length="449" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104726" i_stop="106175" i_length="1450">
            <donor d_prob="0.995" d_score="0.92"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106176" g_stop="106217" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="491" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="+" ref_id="SGN-E394033" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E394033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104277" e_stop="104725"/>
          <exon e_start="106176" e_stop="106217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCTTTTAAGATAGGACCCACCCATTTTCTCCATTACAAATTACGATAATTTTGGTATTGAAAGCCCCACAATTTTCCTATGATATTTTGCTCTCCACTCTGTTCTGTTCTGCTATCGGGCATTTCAACAATTTGTCCCTTCTTTGCCGAAGCGTAGCGCTCCCTTTTACTGCATTTTCTCCTACGACTTTCATCTAGGTTCTTAGAGGCATCTCGGTGGTACAAATCAAGTGTTTTCTGTTAGCAATGGGTTCATCTGCTTCAGTGCATAAAGATCCGAAATCAGCAATGAAGCTCCGTTTTGTCTTTGCATCTAAATCTGACAAGCTTGTGAGTCCCTCACCTATCAAAGATAAACCCCTTGATACTGCTGAAATCAAACTCTCTCTTCCTCAAATCAAACCTCAGCGTTCCCCGGTGCTCCCGCTTAACAGTTTTAGCGACTATGGTACCATCTTCTTCTTTTCAATTCCTGTCCGATTATTCAGTTTGTTTTTATGTTTATTTGACGTTGATTTCACTTTATGTTCGACGCTTTTGTGTGGGGTTTCTCGTGATGAGAAAAAAAAAGAGGAGGAAAATTGATGCTTTTCATGTGAAACACTTTTTTTTCAGTTTCAAATTTTGAGTTAGTCTGATGTTGGATTACTAGTTTCTTCTATTTGCTAAGGAAATTGGTTGTTCTACAGAAATTTTATCTAATGTTTAAGAAAATTGTAGAGATGTTCTGTTTATCTGAAAGGCATGATTAACAGGTTGATGGTCTTCCAACTAATAGTTCCTTTGTTGGATAATAACTATTTGTTGAATGAACTTTAACTCCATCACTAACACAATTCCTGTTCAAAATTGTCTTCTTATGAAACTTAGAAAATTACAATTTTAATGACTTAAGTGTGTTCTTCTTATTATTTTTTTGTTTGCTGTCTATTCCTTTGTGCCATTAGGTAAGATTGACTGACGAGCTACTGTTAAAATCATGTGCAATGCCAAAATTCTCTTATTGGTGGGGTCATTTGCAGCACATGTTGTGGCACTACGACCTTTCAAAAAAAAAGAAAGAAAGAAAGAAAGAGACACCCTGTAGCTTAATGTGAATAATTCAATAGAAGAGTCATTTTCAATATTCTTTATATTCAACCCAGATGTATTTGTCAATATAAAAATGGATGTATAATATAAGTGTAATCCATGTACATTTAGTGTAAAAAGTAAACAGTGAAATACAGGCTAAAGACACCGTTTTACAGGGAAAATGGCTTCCTTGTTTCATTTCATCATCTGTGCAAGCAGCTGTAACCTTAGTTGAGATTTGCACGTTTAATTCAGCGACTTTTCTTGTTTCATAATCCTTGTCAATTGTGTTACATGTAATTTTCCTCTTGTCATGTGGTTTTGTTACAACAGTCAGGGGATCCTTCATTGACTTCTTTCAAAGCAATCCGACGAATCATCTTGTTTTCTATGATATTTATGTGGTAATAGCACTCTCTAGTCAAAATAAGTTTCTTCTGTGTATTTTATGCCATTGACAAAATGTAGTGCAGTTTTTTACTGTAAAGACTTAACTAATGCCTACTAGTTTAGTTTTCTCAGAAGTGTCTAACTAGTTCTGTTTCTTGTTTATTTTTTTATATGGGTGAATTTGTTTTGAATGTGATGTGTTGGGATTGTGGTGGAATAATGGTGAAAACGACATGCTCTATGCTTTCTTTCAGTTTCTTCTTTCGTTTCCCTTGTATCCTCAAACTGATTTCATGAAGCAGAGCCCACATTGTGAAGCTTTCAATATATTTTTAATTGAATTATGTTCATGTTATTGTGCATTTGTCATTGTTACTAGTATTCTCATGATACATTTTATCGTTTCTAATAGCCTAAGGCATTCTTTTGTTTAGGTAGCAAGGAGGAGGCCTTTTTTGATTCCCAGGCCTGGTTGG</genome_strand>
        <mrna_strand>AATTTTTTAAGATAGAACTCTCCCATTTTCTCCATTACGAATTACAATAATTTTGGTATTGAAAGCCCCACAATTTTCCTATGATATTTTGCTCTCCACTCTGTTCTGTTCTGCTATCGGGCATTTCAACAATTTGTCCCTTCTTTGCCGAACCGTAGCGCTCCCTTTTACTGCATTTTCTCCTACGACTTTCATCTAGGTTCTTACAGGCATCTCGGTGGTACAAATCAAGTGTTTTCTGTTACCAATGGGTTCATCTGCTTCAGTGCATAAAGATCCCAAATCAGCAATGAAGCTCCGTTTTGTCTTTGCATCTAAATCTGACAAGCTTGTGAGTCCCTCACCTATCAAAGATAAACCCCTTGATACTGCTGAAATCAAACTCTCTCTTCCTCAAATCAAACCTCAGCGTGGGGCGGTGCTCCCGCTTAACAGTTTTAGCGACTATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAAGGAGGAGGCCTTTTTTGATTCCCAGGCCTGGTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E202540" ref_strand="+" ref_description="SGN-E202540 [cLEC-6-B10]">
      <seq>accttttaagataggacccacccattttctccattacaaattacgataattttggtattgaaagccccacaattttcctatgatattttgctctccactctgttctgttctgctatcgggcatttcaacaatttgtcccttctttgccgaagcgtagcgctcccttttactgcattttctcctacgactttcatctaggttcttagaggcatctcggtggtacaaatcaagtgttttctgttagcaatgggttcatctgcttcagtgcataaagatccgaaatcagcaatgaagctccgttttgtctttgcatctaaatctgacaagcttgtgagtccctcacctatcaaagataaaccccttgatactgctgaaatcaaactctctcttcctcaaatcaaacctcagcgttccccggtgctcccgcttaacagttttagcgactatggtagcaaggaggaggccttttttgattcccaggcctggttggagtcagattgtgatgatgacttctttagtgtcaagggagattttacaccatcacttggaaatactccttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="+" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="103978" stop="106926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104278" g_stop="104725" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="448" r_length="448" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104726" i_stop="106175" i_length="1450">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106176" g_stop="106256" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="529" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106257" i_stop="106595" i_length="339">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106596" g_stop="106626" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="560" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="+" ref_id="SGN-E202540" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104278" e_stop="104725"/>
          <exon e_start="106176" e_stop="106256"/>
          <exon e_start="106596" e_stop="106626"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTTTTAAGATAGGACCCACCCATTTTCTCCATTACAAATTACGATAATTTTGGTATTGAAAGCCCCACAATTTTCCTATGATATTTTGCTCTCCACTCTGTTCTGTTCTGCTATCGGGCATTTCAACAATTTGTCCCTTCTTTGCCGAAGCGTAGCGCTCCCTTTTACTGCATTTTCTCCTACGACTTTCATCTAGGTTCTTAGAGGCATCTCGGTGGTACAAATCAAGTGTTTTCTGTTAGCAATGGGTTCATCTGCTTCAGTGCATAAAGATCCGAAATCAGCAATGAAGCTCCGTTTTGTCTTTGCATCTAAATCTGACAAGCTTGTGAGTCCCTCACCTATCAAAGATAAACCCCTTGATACTGCTGAAATCAAACTCTCTCTTCCTCAAATCAAACCTCAGCGTTCCCCGGTGCTCCCGCTTAACAGTTTTAGCGACTATGGTACCATCTTCTTCTTTTCAATTCCTGTCCGATTATTCAGTTTGTTTTTATGTTTATTTGACGTTGATTTCACTTTATGTTCGACGCTTTTGTGTGGGGTTTCTCGTGATGAGAAAAAAAAAGAGGAGGAAAATTGATGCTTTTCATGTGAAACACTTTTTTTTCAGTTTCAAATTTTGAGTTAGTCTGATGTTGGATTACTAGTTTCTTCTATTTGCTAAGGAAATTGGTTGTTCTACAGAAATTTTATCTAATGTTTAAGAAAATTGTAGAGATGTTCTGTTTATCTGAAAGGCATGATTAACAGGTTGATGGTCTTCCAACTAATAGTTCCTTTGTTGGATAATAACTATTTGTTGAATGAACTTTAACTCCATCACTAACACAATTCCTGTTCAAAATTGTCTTCTTATGAAACTTAGAAAATTACAATTTTAATGACTTAAGTGTGTTCTTCTTATTATTTTTTTGTTTGCTGTCTATTCCTTTGTGCCATTAGGTAAGATTGACTGACGAGCTACTGTTAAAATCATGTGCAATGCCAAAATTCTCTTATTGGTGGGGTCATTTGCAGCACATGTTGTGGCACTACGACCTTTCAAAAAAAAAGAAAGAAAGAAAGAAAGAGACACCCTGTAGCTTAATGTGAATAATTCAATAGAAGAGTCATTTTCAATATTCTTTATATTCAACCCAGATGTATTTGTCAATATAAAAATGGATGTATAATATAAGTGTAATCCATGTACATTTAGTGTAAAAAGTAAACAGTGAAATACAGGCTAAAGACACCGTTTTACAGGGAAAATGGCTTCCTTGTTTCATTTCATCATCTGTGCAAGCAGCTGTAACCTTAGTTGAGATTTGCACGTTTAATTCAGCGACTTTTCTTGTTTCATAATCCTTGTCAATTGTGTTACATGTAATTTTCCTCTTGTCATGTGGTTTTGTTACAACAGTCAGGGGATCCTTCATTGACTTCTTTCAAAGCAATCCGACGAATCATCTTGTTTTCTATGATATTTATGTGGTAATAGCACTCTCTAGTCAAAATAAGTTTCTTCTGTGTATTTTATGCCATTGACAAAATGTAGTGCAGTTTTTTACTGTAAAGACTTAACTAATGCCTACTAGTTTAGTTTTCTCAGAAGTGTCTAACTAGTTCTGTTTCTTGTTTATTTTTTTATATGGGTGAATTTGTTTTGAATGTGATGTGTTGGGATTGTGGTGGAATAATGGTGAAAACGACATGCTCTATGCTTTCTTTCAGTTTCTTCTTTCGTTTCCCTTGTATCCTCAAACTGATTTCATGAAGCAGAGCCCACATTGTGAAGCTTTCAATATATTTTTAATTGAATTATGTTCATGTTATTGTGCATTTGTCATTGTTACTAGTATTCTCATGATACATTTTATCGTTTCTAATAGCCTAAGGCATTCTTTTGTTTAGGTAGCAAGGAGGAGGCCTTTTTTGATTCCCAGGCCTGGTTGGAGTCAGATTGTGATGATGACTTCTTTAGTGTCAAGGGAGGTGAGACAGAACTTTGATACCTGATGCTCTTTCCATATTCTCCGTTCATCTTTCTTCTCATGTTATTATAGTCATAAAATTGAAAATGGCTATTATGCATTCAACTGAATCATTAGTAATGACTGCTAAGGCAATTTGAGAAGACCAGATCTAGAAAATCAGGTATTGGAAGTACCTGACCTTTTTGTTCAAGAAAAGTGCCACACCAGTGCGTAGTTTTTGCTAAAATAGGGATCTAAGTGTCAGGAACACTTTTTATTCTTGTTGTGAGTAGCCACCTTCAATTTACACTTGCAATCATTATCATTAATTCTTGTAGTCTATCTGTCTTCAATGCAGATTTTACACCATCACTTGGAAATACTCCTTC</genome_strand>
        <mrna_strand>ACCTTTTAAGATAGGACCCACCCATTTTCTCCATTACAAATTACGATAATTTTGGTATTGAAAGCCCCACAATTTTCCTATGATATTTTGCTCTCCACTCTGTTCTGTTCTGCTATCGGGCATTTCAACAATTTGTCCCTTCTTTGCCGAAGCGTAGCGCTCCCTTTTACTGCATTTTCTCCTACGACTTTCATCTAGGTTCTTAGAGGCATCTCGGTGGTACAAATCAAGTGTTTTCTGTTAGCAATGGGTTCATCTGCTTCAGTGCATAAAGATCCGAAATCAGCAATGAAGCTCCGTTTTGTCTTTGCATCTAAATCTGACAAGCTTGTGAGTCCCTCACCTATCAAAGATAAACCCCTTGATACTGCTGAAATCAAACTCTCTCTTCCTCAAATCAAACCTCAGCGTTCCCCGGTGCTCCCGCTTAACAGTTTTAGCGACTATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAAGGAGGAGGCCTTTTTTGATTCCCAGGCCTGGTTGGAGTCAGATTGTGATGATGACTTCTTTAGTGTCAAGGGAG...................................................................................................................................................................................................................................................................................................................................................ATTTTACACCATCACTTGGAAATACTCCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E730017" ref_strand="+" ref_description="SGN-E730017 [LA22DB11]">
      <seq>attttgctctccactctgttctgttctgctatcggcatttcaacaatttgtcccttctttgccgaagcgtagcgctcccttttactgcattttctcctacgactttcatctaggttcttagaggcatctcggtggtacaaatcaagtgttttctgttagcaatgggttcatctgcttcagtgcataaagatccgaaatcagcaatgaagctccgttttgtctttgcatctaaatctgacaagcttgtgagtccctcacctatcaaagataaaccccttgatactgctgaaatcaaactctctcttcctcaaatcaaacctcagcgttccccggtgctcccgcttaacagttttagcgactatggtagcaaggaggaggccttttttgattcccaggcctggttggagtcagattgtgatgatgacttctttagtgtcaagggagattttacaccatcacttggaaatactccttcgtgtggaaatacacctgtgcatcgaggtttgttggtcggtaatctgctaggtaatcgagcctcttttggagaaagaacttctgcttctataccgcaatcttctccaatacacaagaggaagaatttacttgagcttttcaaagaaagctcaagaaaccggaacccgaatgagcatggtgctgaagacaacgaaaatatacaggcagctggtctacagctaccacctaaatccccatttagcacacctcatgtgccggtgtctagtggcaagagcacccctgtaggaaagtacaaaagtgaggcaaaatccctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="+" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="104062" stop="107240"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104362" g_stop="104725" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104726" i_stop="106175" i_length="1450">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106176" g_stop="106256" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="444" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106257" i_stop="106595" i_length="339">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106596" g_stop="106940" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="789" r_length="345" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="+" ref_id="SGN-E730017" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104362" e_stop="104725"/>
          <exon e_start="106176" e_stop="106256"/>
          <exon e_start="106596" e_stop="106940"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTGCTCTCCACTCTGTTCTGTTCTGCTATCGGGCATTTCAACAATTTGTCCCTTCTTTGCCGAAGCGTAGCGCTCCCTTTTACTGCATTTTCTCCTACGACTTTCATCTAGGTTCTTAGAGGCATCTCGGTGGTACAAATCAAGTGTTTTCTGTTAGCAATGGGTTCATCTGCTTCAGTGCATAAAGATCCGAAATCAGCAATGAAGCTCCGTTTTGTCTTTGCATCTAAATCTGACAAGCTTGTGAGTCCCTCACCTATCAAAGATAAACCCCTTGATACTGCTGAAATCAAACTCTCTCTTCCTCAAATCAAACCTCAGCGTTCCCCGGTGCTCCCGCTTAACAGTTTTAGCGACTATGGTACCATCTTCTTCTTTTCAATTCCTGTCCGATTATTCAGTTTGTTTTTATGTTTATTTGACGTTGATTTCACTTTATGTTCGACGCTTTTGTGTGGGGTTTCTCGTGATGAGAAAAAAAAAGAGGAGGAAAATTGATGCTTTTCATGTGAAACACTTTTTTTTCAGTTTCAAATTTTGAGTTAGTCTGATGTTGGATTACTAGTTTCTTCTATTTGCTAAGGAAATTGGTTGTTCTACAGAAATTTTATCTAATGTTTAAGAAAATTGTAGAGATGTTCTGTTTATCTGAAAGGCATGATTAACAGGTTGATGGTCTTCCAACTAATAGTTCCTTTGTTGGATAATAACTATTTGTTGAATGAACTTTAACTCCATCACTAACACAATTCCTGTTCAAAATTGTCTTCTTATGAAACTTAGAAAATTACAATTTTAATGACTTAAGTGTGTTCTTCTTATTATTTTTTTGTTTGCTGTCTATTCCTTTGTGCCATTAGGTAAGATTGACTGACGAGCTACTGTTAAAATCATGTGCAATGCCAAAATTCTCTTATTGGTGGGGTCATTTGCAGCACATGTTGTGGCACTACGACCTTTCAAAAAAAAAGAAAGAAAGAAAGAAAGAGACACCCTGTAGCTTAATGTGAATAATTCAATAGAAGAGTCATTTTCAATATTCTTTATATTCAACCCAGATGTATTTGTCAATATAAAAATGGATGTATAATATAAGTGTAATCCATGTACATTTAGTGTAAAAAGTAAACAGTGAAATACAGGCTAAAGACACCGTTTTACAGGGAAAATGGCTTCCTTGTTTCATTTCATCATCTGTGCAAGCAGCTGTAACCTTAGTTGAGATTTGCACGTTTAATTCAGCGACTTTTCTTGTTTCATAATCCTTGTCAATTGTGTTACATGTAATTTTCCTCTTGTCATGTGGTTTTGTTACAACAGTCAGGGGATCCTTCATTGACTTCTTTCAAAGCAATCCGACGAATCATCTTGTTTTCTATGATATTTATGTGGTAATAGCACTCTCTAGTCAAAATAAGTTTCTTCTGTGTATTTTATGCCATTGACAAAATGTAGTGCAGTTTTTTACTGTAAAGACTTAACTAATGCCTACTAGTTTAGTTTTCTCAGAAGTGTCTAACTAGTTCTGTTTCTTGTTTATTTTTTTATATGGGTGAATTTGTTTTGAATGTGATGTGTTGGGATTGTGGTGGAATAATGGTGAAAACGACATGCTCTATGCTTTCTTTCAGTTTCTTCTTTCGTTTCCCTTGTATCCTCAAACTGATTTCATGAAGCAGAGCCCACATTGTGAAGCTTTCAATATATTTTTAATTGAATTATGTTCATGTTATTGTGCATTTGTCATTGTTACTAGTATTCTCATGATACATTTTATCGTTTCTAATAGCCTAAGGCATTCTTTTGTTTAGGTAGCAAGGAGGAGGCCTTTTTTGATTCCCAGGCCTGGTTGGAGTCAGATTGTGATGATGACTTCTTTAGTGTCAAGGGAGGTGAGACAGAACTTTGATACCTGATGCTCTTTCCATATTCTCCGTTCATCTTTCTTCTCATGTTATTATAGTCATAAAATTGAAAATGGCTATTATGCATTCAACTGAATCATTAGTAATGACTGCTAAGGCAATTTGAGAAGACCAGATCTAGAAAATCAGGTATTGGAAGTACCTGACCTTTTTGTTCAAGAAAAGTGCCACACCAGTGCGTAGTTTTTGCTAAAATAGGGATCTAAGTGTCAGGAACACTTTTTATTCTTGTTGTGAGTAGCCACCTTCAATTTACACTTGCAATCATTATCATTAATTCTTGTAGTCTATCTGTCTTCAATGCAGATTTTACACCATCACTTGGAAATACTCCTTCGTGTGGAAATACACCTGTGCATCGAGGTTTGTTGGTCGGTAATCTGCTAGGTAATCGAGCCTCTTTTGGAGAAAGAACTTCTGCTTCTATACCGCAATCTTCTCCAATACACAAGAGGAAGAATTTACTTGAGCTTTTCAAAGAAAGCTCAAGAAACCGGAACCCGAATGAGCATGGTGCTGAAGACAACGAAAATATACAGGCAGCTGGTCTACAGCTACCACCTAAATCCACATTTAGCACACCTCATGTGCCGGTGTCTAGTGGCAAGAGCACCCCTGTAGGAAAGTACAAAAGTGAGGCAAAATCGCTGA</genome_strand>
        <mrna_strand>ATTTTGCTCTCCACTCTGTTCTGTTCTGCTATCG-GCATTTCAACAATTTGTCCCTTCTTTGCCGAAGCGTAGCGCTCCCTTTTACTGCATTTTCTCCTACGACTTTCATCTAGGTTCTTAGAGGCATCTCGGTGGTACAAATCAAGTGTTTTCTGTTAGCAATGGGTTCATCTGCTTCAGTGCATAAAGATCCGAAATCAGCAATGAAGCTCCGTTTTGTCTTTGCATCTAAATCTGACAAGCTTGTGAGTCCCTCACCTATCAAAGATAAACCCCTTGATACTGCTGAAATCAAACTCTCTCTTCCTCAAATCAAACCTCAGCGTTCCCCGGTGCTCCCGCTTAACAGTTTTAGCGACTATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAAGGAGGAGGCCTTTTTTGATTCCCAGGCCTGGTTGGAGTCAGATTGTGATGATGACTTCTTTAGTGTCAAGGGAG...................................................................................................................................................................................................................................................................................................................................................ATTTTACACCATCACTTGGAAATACTCCTTCGTGTGGAAATACACCTGTGCATCGAGGTTTGTTGGTCGGTAATCTGCTAGGTAATCGAGCCTCTTTTGGAGAAAGAACTTCTGCTTCTATACCGCAATCTTCTCCAATACACAAGAGGAAGAATTTACTTGAGCTTTTCAAAGAAAGCTCAAGAAACCGGAACCCGAATGAGCATGGTGCTGAAGACAACGAAAATATACAGGCAGCTGGTCTACAGCTACCACCTAAATCCCCATTTAGCACACCTCATGTGCCGGTGTCTAGTGGCAAGAGCACCCCTGTAGGAAAGTACAAAAGTGAGGCAAAATCCCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E272660" ref_strand="+" ref_description="SGN-E272660 [cLEM-21-P16]">
      <seq>tctgttctgttctgctatcgggcatttcaacaatttgtcccttctttgccgaagcgtagcgctcccttttactgcattttctcctacgactttcatctaggttcttagaggcatctcggtggtacaaatcaagtgttttctgttagcaatgggttcatctgcttcagtgcataaagatccgaaatcagcaatgaagctccgttttgtctttgcatctaaatctgacaagcttgtgagtccctcacctatcaaagataaaccccttgatactgctgaaatcaaactctctcttcctcaaatcaaacctcagcgttccccggtgctcccgcttaacagttttagcgactatggtagcaaggaggaggccttttttgattcccaggcctggttggagtcagattgtgatgatgacttctttagtgtcaagggagattttacaccatcacttggaaatactccttcgtgtggaaatacacctgtgcatcgaggtttgttggtcggtaatctgctaggtaatcgagcctcttttggagaaagaacttctgcttctataccgcaatcttctccaatacacaagaggaagaatttacttgagcttttcaaagaaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="+" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="104076" stop="107075"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104376" g_stop="104725" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="350" r_length="350" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104726" i_stop="106175" i_length="1450">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106176" g_stop="106256" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="431" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106257" i_stop="106595" i_length="339">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106596" g_stop="106775" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="611" r_length="180" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="+" ref_id="SGN-E272660" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272660" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104376" e_stop="104725"/>
          <exon e_start="106176" e_stop="106256"/>
          <exon e_start="106596" e_stop="106775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTTCTGTTCTGCTATCGGGCATTTCAACAATTTGTCCCTTCTTTGCCGAAGCGTAGCGCTCCCTTTTACTGCATTTTCTCCTACGACTTTCATCTAGGTTCTTAGAGGCATCTCGGTGGTACAAATCAAGTGTTTTCTGTTAGCAATGGGTTCATCTGCTTCAGTGCATAAAGATCCGAAATCAGCAATGAAGCTCCGTTTTGTCTTTGCATCTAAATCTGACAAGCTTGTGAGTCCCTCACCTATCAAAGATAAACCCCTTGATACTGCTGAAATCAAACTCTCTCTTCCTCAAATCAAACCTCAGCGTTCCCCGGTGCTCCCGCTTAACAGTTTTAGCGACTATGGTACCATCTTCTTCTTTTCAATTCCTGTCCGATTATTCAGTTTGTTTTTATGTTTATTTGACGTTGATTTCACTTTATGTTCGACGCTTTTGTGTGGGGTTTCTCGTGATGAGAAAAAAAAAGAGGAGGAAAATTGATGCTTTTCATGTGAAACACTTTTTTTTCAGTTTCAAATTTTGAGTTAGTCTGATGTTGGATTACTAGTTTCTTCTATTTGCTAAGGAAATTGGTTGTTCTACAGAAATTTTATCTAATGTTTAAGAAAATTGTAGAGATGTTCTGTTTATCTGAAAGGCATGATTAACAGGTTGATGGTCTTCCAACTAATAGTTCCTTTGTTGGATAATAACTATTTGTTGAATGAACTTTAACTCCATCACTAACACAATTCCTGTTCAAAATTGTCTTCTTATGAAACTTAGAAAATTACAATTTTAATGACTTAAGTGTGTTCTTCTTATTATTTTTTTGTTTGCTGTCTATTCCTTTGTGCCATTAGGTAAGATTGACTGACGAGCTACTGTTAAAATCATGTGCAATGCCAAAATTCTCTTATTGGTGGGGTCATTTGCAGCACATGTTGTGGCACTACGACCTTTCAAAAAAAAAGAAAGAAAGAAAGAAAGAGACACCCTGTAGCTTAATGTGAATAATTCAATAGAAGAGTCATTTTCAATATTCTTTATATTCAACCCAGATGTATTTGTCAATATAAAAATGGATGTATAATATAAGTGTAATCCATGTACATTTAGTGTAAAAAGTAAACAGTGAAATACAGGCTAAAGACACCGTTTTACAGGGAAAATGGCTTCCTTGTTTCATTTCATCATCTGTGCAAGCAGCTGTAACCTTAGTTGAGATTTGCACGTTTAATTCAGCGACTTTTCTTGTTTCATAATCCTTGTCAATTGTGTTACATGTAATTTTCCTCTTGTCATGTGGTTTTGTTACAACAGTCAGGGGATCCTTCATTGACTTCTTTCAAAGCAATCCGACGAATCATCTTGTTTTCTATGATATTTATGTGGTAATAGCACTCTCTAGTCAAAATAAGTTTCTTCTGTGTATTTTATGCCATTGACAAAATGTAGTGCAGTTTTTTACTGTAAAGACTTAACTAATGCCTACTAGTTTAGTTTTCTCAGAAGTGTCTAACTAGTTCTGTTTCTTGTTTATTTTTTTATATGGGTGAATTTGTTTTGAATGTGATGTGTTGGGATTGTGGTGGAATAATGGTGAAAACGACATGCTCTATGCTTTCTTTCAGTTTCTTCTTTCGTTTCCCTTGTATCCTCAAACTGATTTCATGAAGCAGAGCCCACATTGTGAAGCTTTCAATATATTTTTAATTGAATTATGTTCATGTTATTGTGCATTTGTCATTGTTACTAGTATTCTCATGATACATTTTATCGTTTCTAATAGCCTAAGGCATTCTTTTGTTTAGGTAGCAAGGAGGAGGCCTTTTTTGATTCCCAGGCCTGGTTGGAGTCAGATTGTGATGATGACTTCTTTAGTGTCAAGGGAGGTGAGACAGAACTTTGATACCTGATGCTCTTTCCATATTCTCCGTTCATCTTTCTTCTCATGTTATTATAGTCATAAAATTGAAAATGGCTATTATGCATTCAACTGAATCATTAGTAATGACTGCTAAGGCAATTTGAGAAGACCAGATCTAGAAAATCAGGTATTGGAAGTACCTGACCTTTTTGTTCAAGAAAAGTGCCACACCAGTGCGTAGTTTTTGCTAAAATAGGGATCTAAGTGTCAGGAACACTTTTTATTCTTGTTGTGAGTAGCCACCTTCAATTTACACTTGCAATCATTATCATTAATTCTTGTAGTCTATCTGTCTTCAATGCAGATTTTACACCATCACTTGGAAATACTCCTTCGTGTGGAAATACACCTGTGCATCGAGGTTTGTTGGTCGGTAATCTGCTAGGTAATCGAGCCTCTTTTGGAGAAAGAACTTCTGCTTCTATACCGCAATCTTCTCCAATACACAAGAGGAAGAATTTACTTGAGCTTTTCAAAGAAAGCT</genome_strand>
        <mrna_strand>TCTGTTCTGTTCTGCTATCGGGCATTTCAACAATTTGTCCCTTCTTTGCCGAAGCGTAGCGCTCCCTTTTACTGCATTTTCTCCTACGACTTTCATCTAGGTTCTTAGAGGCATCTCGGTGGTACAAATCAAGTGTTTTCTGTTAGCAATGGGTTCATCTGCTTCAGTGCATAAAGATCCGAAATCAGCAATGAAGCTCCGTTTTGTCTTTGCATCTAAATCTGACAAGCTTGTGAGTCCCTCACCTATCAAAGATAAACCCCTTGATACTGCTGAAATCAAACTCTCTCTTCCTCAAATCAAACCTCAGCGTTCCCCGGTGCTCCCGCTTAACAGTTTTAGCGACTATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAAGGAGGAGGCCTTTTTTGATTCCCAGGCCTGGTTGGAGTCAGATTGTGATGATGACTTCTTTAGTGTCAAGGGAG...................................................................................................................................................................................................................................................................................................................................................ATTTTACACCATCACTTGGAAATACTCCTTCGTGTGGAAATACACCTGTGCATCGAGGTTTGTTGGTCGGTAATCTGCTAGGTAATCGAGCCTCTTTTGGAGAAAGAACTTCTGCTTCTATACCGCAATCTTCTCCAATACACAAGAGGAAGAATTTACTTGAGCTTTTCAAAGAAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E359531" ref_strand="+" ref_description="SGN-E359531 [cLHT-31-N6]">
      <seq>ttctgttctgctatcgggcatttcaacaatttgtcccttctttgccaaagcgtaacgctcccttttactgcattttctcctacgattttcttctcggtggtacaaatcaagtgttttctgttagcaatgggttcatctgcttcagtgcataaagatccaaaatcagcaatgaagctccgttttgtctttgcatctaaatctgacaagcttgtgagtccctcacctatcaaagataaaccccttgatactgctgaaatcaaactctctcttcctcaaatcaaacctcagcgttccccggtgctcccgcttaacagttttagcgactatggtagcaaggaggaggccttttttgattcccaggcctggttggagtcagattgcgatgatgacttctttagtgtcaagggagattttacaccatcacttggaaatactccttcgtgtggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="+" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="104080" stop="106935"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104380" g_stop="104725" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104726" i_stop="106175" i_length="1450">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106176" g_stop="106256" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="409" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106257" i_stop="106595" i_length="339">
            <donor d_prob="0.958" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106596" g_stop="106635" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="449" r_length="40" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="+" ref_id="SGN-E359531" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.040" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104380" e_stop="104725"/>
          <exon e_start="106176" e_stop="106256"/>
          <exon e_start="106596" e_stop="106635"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGTTCTGCTATCGGGCATTTCAACAATTTGTCCCTTCTTTGCCGAAGCGTAGCGCTCCCTTTTACTGCATTTTCTCCTACGACTTTCATCTAGGTTCTTAGAGGCATCTCGGTGGTACAAATCAAGTGTTTTCTGTTAGCAATGGGTTCATCTGCTTCAGTGCATAAAGATCCGAAATCAGCAATGAAGCTCCGTTTTGTCTTTGCATCTAAATCTGACAAGCTTGTGAGTCCCTCACCTATCAAAGATAAACCCCTTGATACTGCTGAAATCAAACTCTCTCTTCCTCAAATCAAACCTCAGCGTTCCCCGGTGCTCCCGCTTAACAGTTTTAGCGACTATGGTACCATCTTCTTCTTTTCAATTCCTGTCCGATTATTCAGTTTGTTTTTATGTTTATTTGACGTTGATTTCACTTTATGTTCGACGCTTTTGTGTGGGGTTTCTCGTGATGAGAAAAAAAAAGAGGAGGAAAATTGATGCTTTTCATGTGAAACACTTTTTTTTCAGTTTCAAATTTTGAGTTAGTCTGATGTTGGATTACTAGTTTCTTCTATTTGCTAAGGAAATTGGTTGTTCTACAGAAATTTTATCTAATGTTTAAGAAAATTGTAGAGATGTTCTGTTTATCTGAAAGGCATGATTAACAGGTTGATGGTCTTCCAACTAATAGTTCCTTTGTTGGATAATAACTATTTGTTGAATGAACTTTAACTCCATCACTAACACAATTCCTGTTCAAAATTGTCTTCTTATGAAACTTAGAAAATTACAATTTTAATGACTTAAGTGTGTTCTTCTTATTATTTTTTTGTTTGCTGTCTATTCCTTTGTGCCATTAGGTAAGATTGACTGACGAGCTACTGTTAAAATCATGTGCAATGCCAAAATTCTCTTATTGGTGGGGTCATTTGCAGCACATGTTGTGGCACTACGACCTTTCAAAAAAAAAGAAAGAAAGAAAGAAAGAGACACCCTGTAGCTTAATGTGAATAATTCAATAGAAGAGTCATTTTCAATATTCTTTATATTCAACCCAGATGTATTTGTCAATATAAAAATGGATGTATAATATAAGTGTAATCCATGTACATTTAGTGTAAAAAGTAAACAGTGAAATACAGGCTAAAGACACCGTTTTACAGGGAAAATGGCTTCCTTGTTTCATTTCATCATCTGTGCAAGCAGCTGTAACCTTAGTTGAGATTTGCACGTTTAATTCAGCGACTTTTCTTGTTTCATAATCCTTGTCAATTGTGTTACATGTAATTTTCCTCTTGTCATGTGGTTTTGTTACAACAGTCAGGGGATCCTTCATTGACTTCTTTCAAAGCAATCCGACGAATCATCTTGTTTTCTATGATATTTATGTGGTAATAGCACTCTCTAGTCAAAATAAGTTTCTTCTGTGTATTTTATGCCATTGACAAAATGTAGTGCAGTTTTTTACTGTAAAGACTTAACTAATGCCTACTAGTTTAGTTTTCTCAGAAGTGTCTAACTAGTTCTGTTTCTTGTTTATTTTTTTATATGGGTGAATTTGTTTTGAATGTGATGTGTTGGGATTGTGGTGGAATAATGGTGAAAACGACATGCTCTATGCTTTCTTTCAGTTTCTTCTTTCGTTTCCCTTGTATCCTCAAACTGATTTCATGAAGCAGAGCCCACATTGTGAAGCTTTCAATATATTTTTAATTGAATTATGTTCATGTTATTGTGCATTTGTCATTGTTACTAGTATTCTCATGATACATTTTATCGTTTCTAATAGCCTAAGGCATTCTTTTGTTTAGGTAGCAAGGAGGAGGCCTTTTTTGATTCCCAGGCCTGGTTGGAGTCAGATTGTGATGATGACTTCTTTAGTGTCAAGGGAGGTGAGACAGAACTTTGATACCTGATGCTCTTTCCATATTCTCCGTTCATCTTTCTTCTCATGTTATTATAGTCATAAAATTGAAAATGGCTATTATGCATTCAACTGAATCATTAGTAATGACTGCTAAGGCAATTTGAGAAGACCAGATCTAGAAAATCAGGTATTGGAAGTACCTGACCTTTTTGTTCAAGAAAAGTGCCACACCAGTGCGTAGTTTTTGCTAAAATAGGGATCTAAGTGTCAGGAACACTTTTTATTCTTGTTGTGAGTAGCCACCTTCAATTTACACTTGCAATCATTATCATTAATTCTTGTAGTCTATCTGTCTTCAATGCAGATTTTACACCATCACTTGGAAATACTCCTTCGTGTGGAAA</genome_strand>
        <mrna_strand>TTCTGTTCTGCTATCGGGCATTTCAACAATTTGTCCCTTCTTTGCCAAAGCGTAACGCTCCCTTTTACTGCATTTTCTCCTACGA-TTT--TC----TTC-T----------CGGTGGTACAAATCAAGTGTTTTCTGTTAGCAATGGGTTCATCTGCTTCAGTGCATAAAGATCCAAAATCAGCAATGAAGCTCCGTTTTGTCTTTGCATCTAAATCTGACAAGCTTGTGAGTCCCTCACCTATCAAAGATAAACCCCTTGATACTGCTGAAATCAAACTCTCTCTTCCTCAAATCAAACCTCAGCGTTCCCCGGTGCTCCCGCTTAACAGTTTTAGCGACTATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAAGGAGGAGGCCTTTTTTGATTCCCAGGCCTGGTTGGAGTCAGATTGCGATGATGACTTCTTTAGTGTCAAGGGAG...................................................................................................................................................................................................................................................................................................................................................ATTTTACACCATCACTTGGAAATACTCCTTCGTGTGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E208458" ref_strand="+" ref_description="SGN-E208458 [cLEC-37-L16]">
      <seq>tctgttctgctatcgggcatttcaacaatttgtcccttctttgccgaagcgtagcgctcccttttactgcattttctcctacgactttcatctaggttcttagaggcatctcggtggtacaaatcaagtgttttctgttagcaatgggttcatctgcttcagtgcataaagatccgaaatcagcaatgaagctccgttttgtctttgcatctaaatctgacaagcttgtgagtccctcacctatcaaagataaaccccttgatactgctgaaatcaaactctctcttcctcaaatcaaacctcagcgttccccggtgctcccgcttaacagttttagcgactatggtagcaaggaggaggccttttttgattcccaggcctggttggagtcagattgtgatgatgacttctttagtgtcaagggagattttacaccatcacttggaaatactccttcgtgtggaaatacacctgtgcatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="+" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="104081" stop="106950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104381" g_stop="104725" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104726" i_stop="106175" i_length="1450">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106176" g_stop="106256" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="426" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106257" i_stop="106595" i_length="339">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106596" g_stop="106650" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="481" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="+" ref_id="SGN-E208458" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104381" e_stop="104725"/>
          <exon e_start="106176" e_stop="106256"/>
          <exon e_start="106596" e_stop="106650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTTCTGCTATCGGGCATTTCAACAATTTGTCCCTTCTTTGCCGAAGCGTAGCGCTCCCTTTTACTGCATTTTCTCCTACGACTTTCATCTAGGTTCTTAGAGGCATCTCGGTGGTACAAATCAAGTGTTTTCTGTTAGCAATGGGTTCATCTGCTTCAGTGCATAAAGATCCGAAATCAGCAATGAAGCTCCGTTTTGTCTTTGCATCTAAATCTGACAAGCTTGTGAGTCCCTCACCTATCAAAGATAAACCCCTTGATACTGCTGAAATCAAACTCTCTCTTCCTCAAATCAAACCTCAGCGTTCCCCGGTGCTCCCGCTTAACAGTTTTAGCGACTATGGTACCATCTTCTTCTTTTCAATTCCTGTCCGATTATTCAGTTTGTTTTTATGTTTATTTGACGTTGATTTCACTTTATGTTCGACGCTTTTGTGTGGGGTTTCTCGTGATGAGAAAAAAAAAGAGGAGGAAAATTGATGCTTTTCATGTGAAACACTTTTTTTTCAGTTTCAAATTTTGAGTTAGTCTGATGTTGGATTACTAGTTTCTTCTATTTGCTAAGGAAATTGGTTGTTCTACAGAAATTTTATCTAATGTTTAAGAAAATTGTAGAGATGTTCTGTTTATCTGAAAGGCATGATTAACAGGTTGATGGTCTTCCAACTAATAGTTCCTTTGTTGGATAATAACTATTTGTTGAATGAACTTTAACTCCATCACTAACACAATTCCTGTTCAAAATTGTCTTCTTATGAAACTTAGAAAATTACAATTTTAATGACTTAAGTGTGTTCTTCTTATTATTTTTTTGTTTGCTGTCTATTCCTTTGTGCCATTAGGTAAGATTGACTGACGAGCTACTGTTAAAATCATGTGCAATGCCAAAATTCTCTTATTGGTGGGGTCATTTGCAGCACATGTTGTGGCACTACGACCTTTCAAAAAAAAAGAAAGAAAGAAAGAAAGAGACACCCTGTAGCTTAATGTGAATAATTCAATAGAAGAGTCATTTTCAATATTCTTTATATTCAACCCAGATGTATTTGTCAATATAAAAATGGATGTATAATATAAGTGTAATCCATGTACATTTAGTGTAAAAAGTAAACAGTGAAATACAGGCTAAAGACACCGTTTTACAGGGAAAATGGCTTCCTTGTTTCATTTCATCATCTGTGCAAGCAGCTGTAACCTTAGTTGAGATTTGCACGTTTAATTCAGCGACTTTTCTTGTTTCATAATCCTTGTCAATTGTGTTACATGTAATTTTCCTCTTGTCATGTGGTTTTGTTACAACAGTCAGGGGATCCTTCATTGACTTCTTTCAAAGCAATCCGACGAATCATCTTGTTTTCTATGATATTTATGTGGTAATAGCACTCTCTAGTCAAAATAAGTTTCTTCTGTGTATTTTATGCCATTGACAAAATGTAGTGCAGTTTTTTACTGTAAAGACTTAACTAATGCCTACTAGTTTAGTTTTCTCAGAAGTGTCTAACTAGTTCTGTTTCTTGTTTATTTTTTTATATGGGTGAATTTGTTTTGAATGTGATGTGTTGGGATTGTGGTGGAATAATGGTGAAAACGACATGCTCTATGCTTTCTTTCAGTTTCTTCTTTCGTTTCCCTTGTATCCTCAAACTGATTTCATGAAGCAGAGCCCACATTGTGAAGCTTTCAATATATTTTTAATTGAATTATGTTCATGTTATTGTGCATTTGTCATTGTTACTAGTATTCTCATGATACATTTTATCGTTTCTAATAGCCTAAGGCATTCTTTTGTTTAGGTAGCAAGGAGGAGGCCTTTTTTGATTCCCAGGCCTGGTTGGAGTCAGATTGTGATGATGACTTCTTTAGTGTCAAGGGAGGTGAGACAGAACTTTGATACCTGATGCTCTTTCCATATTCTCCGTTCATCTTTCTTCTCATGTTATTATAGTCATAAAATTGAAAATGGCTATTATGCATTCAACTGAATCATTAGTAATGACTGCTAAGGCAATTTGAGAAGACCAGATCTAGAAAATCAGGTATTGGAAGTACCTGACCTTTTTGTTCAAGAAAAGTGCCACACCAGTGCGTAGTTTTTGCTAAAATAGGGATCTAAGTGTCAGGAACACTTTTTATTCTTGTTGTGAGTAGCCACCTTCAATTTACACTTGCAATCATTATCATTAATTCTTGTAGTCTATCTGTCTTCAATGCAGATTTTACACCATCACTTGGAAATACTCCTTCGTGTGGAAATACACCTGTGCATCG</genome_strand>
        <mrna_strand>TCTGTTCTGCTATCGGGCATTTCAACAATTTGTCCCTTCTTTGCCGAAGCGTAGCGCTCCCTTTTACTGCATTTTCTCCTACGACTTTCATCTAGGTTCTTAGAGGCATCTCGGTGGTACAAATCAAGTGTTTTCTGTTAGCAATGGGTTCATCTGCTTCAGTGCATAAAGATCCGAAATCAGCAATGAAGCTCCGTTTTGTCTTTGCATCTAAATCTGACAAGCTTGTGAGTCCCTCACCTATCAAAGATAAACCCCTTGATACTGCTGAAATCAAACTCTCTCTTCCTCAAATCAAACCTCAGCGTTCCCCGGTGCTCCCGCTTAACAGTTTTAGCGACTATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAAGGAGGAGGCCTTTTTTGATTCCCAGGCCTGGTTGGAGTCAGATTGTGATGATGACTTCTTTAGTGTCAAGGGAG...................................................................................................................................................................................................................................................................................................................................................ATTTTACACCATCACTTGGAAATACTCCTTCGTGTGGAAATACACCTGTGCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E238333" ref_strand="+" ref_description="SGN-E238333 [cLED-17-A20]">
      <seq>tgctatcgggcatttcaacaatttgtcccttctttgccgaagcgtagcgctcccttttactgcattttctcctacgactttcatctaggttcttagaggcatctcggtggtacaaatcaagtgttttctgttagcaatgggttcatctgcttcagtgcataaagatccgaaatcagcaatgaagctccgttttgtctttgcatctaaatctgacaagcttgtgagtccctcacctatcaaagataaaccccttgatactgctgaaatcaaactctctcttcctcaaatcaaacctcagcgttccccggtgctcccgcttaacagttttagcgactatggtagcaaggaggaggccttttttgattcccaggcctggttggagtcagattgtgatgatgacttctttagtgtcaagggagattttacaccatcacttggaaatactccttcgtgtggaaatacacctgtgcatcgaggtttgttggtcggtaatctgctaggtaatcgagcctcttttggagaaagaacttctgcttctataccgcaatcttctccaatacacaagaggaagaatttacttgagcttttcaaagaaagctcaagaaaccggaacccgaatgagcatggtgctgaagacaacgaaaatatacaggcagctggtctacagctaccacctaaatccacatttagcacacctcatgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="+" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="104088" stop="107180"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104388" g_stop="104725" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104726" i_stop="106175" i_length="1450">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106176" g_stop="106256" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="419" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106257" i_stop="106595" i_length="339">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106596" g_stop="106880" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="704" r_length="285" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="+" ref_id="SGN-E238333" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238333" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104388" e_stop="104725"/>
          <exon e_start="106176" e_stop="106256"/>
          <exon e_start="106596" e_stop="106880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTATCGGGCATTTCAACAATTTGTCCCTTCTTTGCCGAAGCGTAGCGCTCCCTTTTACTGCATTTTCTCCTACGACTTTCATCTAGGTTCTTAGAGGCATCTCGGTGGTACAAATCAAGTGTTTTCTGTTAGCAATGGGTTCATCTGCTTCAGTGCATAAAGATCCGAAATCAGCAATGAAGCTCCGTTTTGTCTTTGCATCTAAATCTGACAAGCTTGTGAGTCCCTCACCTATCAAAGATAAACCCCTTGATACTGCTGAAATCAAACTCTCTCTTCCTCAAATCAAACCTCAGCGTTCCCCGGTGCTCCCGCTTAACAGTTTTAGCGACTATGGTACCATCTTCTTCTTTTCAATTCCTGTCCGATTATTCAGTTTGTTTTTATGTTTATTTGACGTTGATTTCACTTTATGTTCGACGCTTTTGTGTGGGGTTTCTCGTGATGAGAAAAAAAAAGAGGAGGAAAATTGATGCTTTTCATGTGAAACACTTTTTTTTCAGTTTCAAATTTTGAGTTAGTCTGATGTTGGATTACTAGTTTCTTCTATTTGCTAAGGAAATTGGTTGTTCTACAGAAATTTTATCTAATGTTTAAGAAAATTGTAGAGATGTTCTGTTTATCTGAAAGGCATGATTAACAGGTTGATGGTCTTCCAACTAATAGTTCCTTTGTTGGATAATAACTATTTGTTGAATGAACTTTAACTCCATCACTAACACAATTCCTGTTCAAAATTGTCTTCTTATGAAACTTAGAAAATTACAATTTTAATGACTTAAGTGTGTTCTTCTTATTATTTTTTTGTTTGCTGTCTATTCCTTTGTGCCATTAGGTAAGATTGACTGACGAGCTACTGTTAAAATCATGTGCAATGCCAAAATTCTCTTATTGGTGGGGTCATTTGCAGCACATGTTGTGGCACTACGACCTTTCAAAAAAAAAGAAAGAAAGAAAGAAAGAGACACCCTGTAGCTTAATGTGAATAATTCAATAGAAGAGTCATTTTCAATATTCTTTATATTCAACCCAGATGTATTTGTCAATATAAAAATGGATGTATAATATAAGTGTAATCCATGTACATTTAGTGTAAAAAGTAAACAGTGAAATACAGGCTAAAGACACCGTTTTACAGGGAAAATGGCTTCCTTGTTTCATTTCATCATCTGTGCAAGCAGCTGTAACCTTAGTTGAGATTTGCACGTTTAATTCAGCGACTTTTCTTGTTTCATAATCCTTGTCAATTGTGTTACATGTAATTTTCCTCTTGTCATGTGGTTTTGTTACAACAGTCAGGGGATCCTTCATTGACTTCTTTCAAAGCAATCCGACGAATCATCTTGTTTTCTATGATATTTATGTGGTAATAGCACTCTCTAGTCAAAATAAGTTTCTTCTGTGTATTTTATGCCATTGACAAAATGTAGTGCAGTTTTTTACTGTAAAGACTTAACTAATGCCTACTAGTTTAGTTTTCTCAGAAGTGTCTAACTAGTTCTGTTTCTTGTTTATTTTTTTATATGGGTGAATTTGTTTTGAATGTGATGTGTTGGGATTGTGGTGGAATAATGGTGAAAACGACATGCTCTATGCTTTCTTTCAGTTTCTTCTTTCGTTTCCCTTGTATCCTCAAACTGATTTCATGAAGCAGAGCCCACATTGTGAAGCTTTCAATATATTTTTAATTGAATTATGTTCATGTTATTGTGCATTTGTCATTGTTACTAGTATTCTCATGATACATTTTATCGTTTCTAATAGCCTAAGGCATTCTTTTGTTTAGGTAGCAAGGAGGAGGCCTTTTTTGATTCCCAGGCCTGGTTGGAGTCAGATTGTGATGATGACTTCTTTAGTGTCAAGGGAGGTGAGACAGAACTTTGATACCTGATGCTCTTTCCATATTCTCCGTTCATCTTTCTTCTCATGTTATTATAGTCATAAAATTGAAAATGGCTATTATGCATTCAACTGAATCATTAGTAATGACTGCTAAGGCAATTTGAGAAGACCAGATCTAGAAAATCAGGTATTGGAAGTACCTGACCTTTTTGTTCAAGAAAAGTGCCACACCAGTGCGTAGTTTTTGCTAAAATAGGGATCTAAGTGTCAGGAACACTTTTTATTCTTGTTGTGAGTAGCCACCTTCAATTTACACTTGCAATCATTATCATTAATTCTTGTAGTCTATCTGTCTTCAATGCAGATTTTACACCATCACTTGGAAATACTCCTTCGTGTGGAAATACACCTGTGCATCGAGGTTTGTTGGTCGGTAATCTGCTAGGTAATCGAGCCTCTTTTGGAGAAAGAACTTCTGCTTCTATACCGCAATCTTCTCCAATACACAAGAGGAAGAATTTACTTGAGCTTTTCAAAGAAAGCTCAAGAAACCGGAACCCGAATGAGCATGGTGCTGAAGACAACGAAAATATACAGGCAGCTGGTCTACAGCTACCACCTAAATCCACATTTAGCACACCTCATGTGC</genome_strand>
        <mrna_strand>TGCTATCGGGCATTTCAACAATTTGTCCCTTCTTTGCCGAAGCGTAGCGCTCCCTTTTACTGCATTTTCTCCTACGACTTTCATCTAGGTTCTTAGAGGCATCTCGGTGGTACAAATCAAGTGTTTTCTGTTAGCAATGGGTTCATCTGCTTCAGTGCATAAAGATCCGAAATCAGCAATGAAGCTCCGTTTTGTCTTTGCATCTAAATCTGACAAGCTTGTGAGTCCCTCACCTATCAAAGATAAACCCCTTGATACTGCTGAAATCAAACTCTCTCTTCCTCAAATCAAACCTCAGCGTTCCCCGGTGCTCCCGCTTAACAGTTTTAGCGACTATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAAGGAGGAGGCCTTTTTTGATTCCCAGGCCTGGTTGGAGTCAGATTGTGATGATGACTTCTTTAGTGTCAAGGGAG...................................................................................................................................................................................................................................................................................................................................................ATTTTACACCATCACTTGGAAATACTCCTTCGTGTGGAAATACACCTGTGCATCGAGGTTTGTTGGTCGGTAATCTGCTAGGTAATCGAGCCTCTTTTGGAGAAAGAACTTCTGCTTCTATACCGCAATCTTCTCCAATACACAAGAGGAAGAATTTACTTGAGCTTTTCAAAGAAAGCTCAAGAAACCGGAACCCGAATGAGCATGGTGCTGAAGACAACGAAAATATACAGGCAGCTGGTCTACAGCTACCACCTAAATCCACATTTAGCACACCTCATGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E242772" ref_strand="+" ref_description="SGN-E242772 [cLED-31-M22]">
      <seq>tgctatcgggcatttcaacaatttgtcccttctttgccgaagcgtagcgctcccttttactgcattttctcctacgactttcatctaggttcttagaggcatctcggtggtacaaatcaagtgttttctgttagcaatgggttcatctgcttcagtgcataaagatccgaaatcagcaatgaagctccgttttgtctttgcatctaaatctgacaagcttgtgagtccctcacctatcaaagataaaccccttgatactgctgaaatcaaactctctcttcctcaaatcaaacctcagcgttccccggtgctcccgcttaacagttttagcgactatggtagcaaggaggaggccttttttgattcccaggcctggttggagtcagattgtgatgatgacttctttagtgtcaagggagattttacaccatcacttggaaatactccttcgtgtggaaatacacctgtgcatcgaggtttgttggtcggtaatctgctaagtaatcgagcctcttttggagaaagaacttctgcttctataccgcaatcttctccaatacacaagaggaagaatttacttgagcttttcaaagaaagctcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="+" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="104088" stop="107079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104388" g_stop="104725" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104726" i_stop="106175" i_length="1450">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106176" g_stop="106256" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="419" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106257" i_stop="106595" i_length="339">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106596" g_stop="106779" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="603" r_length="184" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="+" ref_id="SGN-E242772" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104388" e_stop="104725"/>
          <exon e_start="106176" e_stop="106256"/>
          <exon e_start="106596" e_stop="106779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTATCGGGCATTTCAACAATTTGTCCCTTCTTTGCCGAAGCGTAGCGCTCCCTTTTACTGCATTTTCTCCTACGACTTTCATCTAGGTTCTTAGAGGCATCTCGGTGGTACAAATCAAGTGTTTTCTGTTAGCAATGGGTTCATCTGCTTCAGTGCATAAAGATCCGAAATCAGCAATGAAGCTCCGTTTTGTCTTTGCATCTAAATCTGACAAGCTTGTGAGTCCCTCACCTATCAAAGATAAACCCCTTGATACTGCTGAAATCAAACTCTCTCTTCCTCAAATCAAACCTCAGCGTTCCCCGGTGCTCCCGCTTAACAGTTTTAGCGACTATGGTACCATCTTCTTCTTTTCAATTCCTGTCCGATTATTCAGTTTGTTTTTATGTTTATTTGACGTTGATTTCACTTTATGTTCGACGCTTTTGTGTGGGGTTTCTCGTGATGAGAAAAAAAAAGAGGAGGAAAATTGATGCTTTTCATGTGAAACACTTTTTTTTCAGTTTCAAATTTTGAGTTAGTCTGATGTTGGATTACTAGTTTCTTCTATTTGCTAAGGAAATTGGTTGTTCTACAGAAATTTTATCTAATGTTTAAGAAAATTGTAGAGATGTTCTGTTTATCTGAAAGGCATGATTAACAGGTTGATGGTCTTCCAACTAATAGTTCCTTTGTTGGATAATAACTATTTGTTGAATGAACTTTAACTCCATCACTAACACAATTCCTGTTCAAAATTGTCTTCTTATGAAACTTAGAAAATTACAATTTTAATGACTTAAGTGTGTTCTTCTTATTATTTTTTTGTTTGCTGTCTATTCCTTTGTGCCATTAGGTAAGATTGACTGACGAGCTACTGTTAAAATCATGTGCAATGCCAAAATTCTCTTATTGGTGGGGTCATTTGCAGCACATGTTGTGGCACTACGACCTTTCAAAAAAAAAGAAAGAAAGAAAGAAAGAGACACCCTGTAGCTTAATGTGAATAATTCAATAGAAGAGTCATTTTCAATATTCTTTATATTCAACCCAGATGTATTTGTCAATATAAAAATGGATGTATAATATAAGTGTAATCCATGTACATTTAGTGTAAAAAGTAAACAGTGAAATACAGGCTAAAGACACCGTTTTACAGGGAAAATGGCTTCCTTGTTTCATTTCATCATCTGTGCAAGCAGCTGTAACCTTAGTTGAGATTTGCACGTTTAATTCAGCGACTTTTCTTGTTTCATAATCCTTGTCAATTGTGTTACATGTAATTTTCCTCTTGTCATGTGGTTTTGTTACAACAGTCAGGGGATCCTTCATTGACTTCTTTCAAAGCAATCCGACGAATCATCTTGTTTTCTATGATATTTATGTGGTAATAGCACTCTCTAGTCAAAATAAGTTTCTTCTGTGTATTTTATGCCATTGACAAAATGTAGTGCAGTTTTTTACTGTAAAGACTTAACTAATGCCTACTAGTTTAGTTTTCTCAGAAGTGTCTAACTAGTTCTGTTTCTTGTTTATTTTTTTATATGGGTGAATTTGTTTTGAATGTGATGTGTTGGGATTGTGGTGGAATAATGGTGAAAACGACATGCTCTATGCTTTCTTTCAGTTTCTTCTTTCGTTTCCCTTGTATCCTCAAACTGATTTCATGAAGCAGAGCCCACATTGTGAAGCTTTCAATATATTTTTAATTGAATTATGTTCATGTTATTGTGCATTTGTCATTGTTACTAGTATTCTCATGATACATTTTATCGTTTCTAATAGCCTAAGGCATTCTTTTGTTTAGGTAGCAAGGAGGAGGCCTTTTTTGATTCCCAGGCCTGGTTGGAGTCAGATTGTGATGATGACTTCTTTAGTGTCAAGGGAGGTGAGACAGAACTTTGATACCTGATGCTCTTTCCATATTCTCCGTTCATCTTTCTTCTCATGTTATTATAGTCATAAAATTGAAAATGGCTATTATGCATTCAACTGAATCATTAGTAATGACTGCTAAGGCAATTTGAGAAGACCAGATCTAGAAAATCAGGTATTGGAAGTACCTGACCTTTTTGTTCAAGAAAAGTGCCACACCAGTGCGTAGTTTTTGCTAAAATAGGGATCTAAGTGTCAGGAACACTTTTTATTCTTGTTGTGAGTAGCCACCTTCAATTTACACTTGCAATCATTATCATTAATTCTTGTAGTCTATCTGTCTTCAATGCAGATTTTACACCATCACTTGGAAATACTCCTTCGTGTGGAAATACACCTGTGCATCGAGGTTTGTTGGTCGGTAATCTGCTAGGTAATCGAGCCTCTTTTGGAGAAAGAACTTCTGCTTCTATACCGCAATCTTCTCCAATACACAAGAGGAAGAATTTACTTGAGCTTTTCAAAGAAAGCTCAAG</genome_strand>
        <mrna_strand>TGCTATCGGGCATTTCAACAATTTGTCCCTTCTTTGCCGAAGCGTAGCGCTCCCTTTTACTGCATTTTCTCCTACGACTTTCATCTAGGTTCTTAGAGGCATCTCGGTGGTACAAATCAAGTGTTTTCTGTTAGCAATGGGTTCATCTGCTTCAGTGCATAAAGATCCGAAATCAGCAATGAAGCTCCGTTTTGTCTTTGCATCTAAATCTGACAAGCTTGTGAGTCCCTCACCTATCAAAGATAAACCCCTTGATACTGCTGAAATCAAACTCTCTCTTCCTCAAATCAAACCTCAGCGTTCCCCGGTGCTCCCGCTTAACAGTTTTAGCGACTATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAAGGAGGAGGCCTTTTTTGATTCCCAGGCCTGGTTGGAGTCAGATTGTGATGATGACTTCTTTAGTGTCAAGGGAG...................................................................................................................................................................................................................................................................................................................................................ATTTTACACCATCACTTGGAAATACTCCTTCGTGTGGAAATACACCTGTGCATCGAGGTTTGTTGGTCGGTAATCTGCTAAGTAATCGAGCCTCTTTTGGAGAAAGAACTTCTGCTTCTATACCGCAATCTTCTCCAATACACAAGAGGAAGAATTTACTTGAGCTTTTCAAAGAAAGCTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E242764" ref_strand="+" ref_description="SGN-E242764 [cLED-31-K20]">
      <seq>tgctatcgggcatttcaacaatttgtcccttctttgccgaagcgtagcgctcccttttactgcattttctcctacgactttcatctaggttcttagaggcatctcgggggtacaaatcaagtgttttctgttagcaatgggttcatctgcttcagtgcataaagatccgaaatcagcaatgaagctccgttttgtctttgcatctaaatctgacaagcttgtgagtccctcacctatcaaagataaaccccttgatactgctgaaatcaaactctctcttcctcaaatcaaacctcagcgttccccggtgctcccgcttaacagttttagcgactatggtagcaaggaggaggccttttttgattcccaggcctggttggagtcagattgtgatgatgacttctttagtgtcaagggagattatacaccatcacttggaaatactccttcgtgtggaaatacacctgtgcatcgaggtttgttggtcggtaatctgctaggtaatcgagcctcttttggagaaagaacttctgcttctataccgcaatcttctccaatacacaagaggaagaatttacttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="+" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="104088" stop="107058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104388" g_stop="104725" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104726" i_stop="106175" i_length="1450">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106176" g_stop="106256" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="419" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106257" i_stop="106595" i_length="339">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106596" g_stop="106758" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="582" r_length="163" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="+" ref_id="SGN-E242764" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104388" e_stop="104725"/>
          <exon e_start="106176" e_stop="106256"/>
          <exon e_start="106596" e_stop="106758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTATCGGGCATTTCAACAATTTGTCCCTTCTTTGCCGAAGCGTAGCGCTCCCTTTTACTGCATTTTCTCCTACGACTTTCATCTAGGTTCTTAGAGGCATCTCGGTGGTACAAATCAAGTGTTTTCTGTTAGCAATGGGTTCATCTGCTTCAGTGCATAAAGATCCGAAATCAGCAATGAAGCTCCGTTTTGTCTTTGCATCTAAATCTGACAAGCTTGTGAGTCCCTCACCTATCAAAGATAAACCCCTTGATACTGCTGAAATCAAACTCTCTCTTCCTCAAATCAAACCTCAGCGTTCCCCGGTGCTCCCGCTTAACAGTTTTAGCGACTATGGTACCATCTTCTTCTTTTCAATTCCTGTCCGATTATTCAGTTTGTTTTTATGTTTATTTGACGTTGATTTCACTTTATGTTCGACGCTTTTGTGTGGGGTTTCTCGTGATGAGAAAAAAAAAGAGGAGGAAAATTGATGCTTTTCATGTGAAACACTTTTTTTTCAGTTTCAAATTTTGAGTTAGTCTGATGTTGGATTACTAGTTTCTTCTATTTGCTAAGGAAATTGGTTGTTCTACAGAAATTTTATCTAATGTTTAAGAAAATTGTAGAGATGTTCTGTTTATCTGAAAGGCATGATTAACAGGTTGATGGTCTTCCAACTAATAGTTCCTTTGTTGGATAATAACTATTTGTTGAATGAACTTTAACTCCATCACTAACACAATTCCTGTTCAAAATTGTCTTCTTATGAAACTTAGAAAATTACAATTTTAATGACTTAAGTGTGTTCTTCTTATTATTTTTTTGTTTGCTGTCTATTCCTTTGTGCCATTAGGTAAGATTGACTGACGAGCTACTGTTAAAATCATGTGCAATGCCAAAATTCTCTTATTGGTGGGGTCATTTGCAGCACATGTTGTGGCACTACGACCTTTCAAAAAAAAAGAAAGAAAGAAAGAAAGAGACACCCTGTAGCTTAATGTGAATAATTCAATAGAAGAGTCATTTTCAATATTCTTTATATTCAACCCAGATGTATTTGTCAATATAAAAATGGATGTATAATATAAGTGTAATCCATGTACATTTAGTGTAAAAAGTAAACAGTGAAATACAGGCTAAAGACACCGTTTTACAGGGAAAATGGCTTCCTTGTTTCATTTCATCATCTGTGCAAGCAGCTGTAACCTTAGTTGAGATTTGCACGTTTAATTCAGCGACTTTTCTTGTTTCATAATCCTTGTCAATTGTGTTACATGTAATTTTCCTCTTGTCATGTGGTTTTGTTACAACAGTCAGGGGATCCTTCATTGACTTCTTTCAAAGCAATCCGACGAATCATCTTGTTTTCTATGATATTTATGTGGTAATAGCACTCTCTAGTCAAAATAAGTTTCTTCTGTGTATTTTATGCCATTGACAAAATGTAGTGCAGTTTTTTACTGTAAAGACTTAACTAATGCCTACTAGTTTAGTTTTCTCAGAAGTGTCTAACTAGTTCTGTTTCTTGTTTATTTTTTTATATGGGTGAATTTGTTTTGAATGTGATGTGTTGGGATTGTGGTGGAATAATGGTGAAAACGACATGCTCTATGCTTTCTTTCAGTTTCTTCTTTCGTTTCCCTTGTATCCTCAAACTGATTTCATGAAGCAGAGCCCACATTGTGAAGCTTTCAATATATTTTTAATTGAATTATGTTCATGTTATTGTGCATTTGTCATTGTTACTAGTATTCTCATGATACATTTTATCGTTTCTAATAGCCTAAGGCATTCTTTTGTTTAGGTAGCAAGGAGGAGGCCTTTTTTGATTCCCAGGCCTGGTTGGAGTCAGATTGTGATGATGACTTCTTTAGTGTCAAGGGAGGTGAGACAGAACTTTGATACCTGATGCTCTTTCCATATTCTCCGTTCATCTTTCTTCTCATGTTATTATAGTCATAAAATTGAAAATGGCTATTATGCATTCAACTGAATCATTAGTAATGACTGCTAAGGCAATTTGAGAAGACCAGATCTAGAAAATCAGGTATTGGAAGTACCTGACCTTTTTGTTCAAGAAAAGTGCCACACCAGTGCGTAGTTTTTGCTAAAATAGGGATCTAAGTGTCAGGAACACTTTTTATTCTTGTTGTGAGTAGCCACCTTCAATTTACACTTGCAATCATTATCATTAATTCTTGTAGTCTATCTGTCTTCAATGCAGATTTTACACCATCACTTGGAAATACTCCTTCGTGTGGAAATACACCTGTGCATCGAGGTTTGTTGGTCGGTAATCTGCTAGGTAATCGAGCCTCTTTTGGAGAAAGAACTTCTGCTTCTATACCGCAATCTTCTCCAATACACAAGAGGAAGAATTTACTTGA</genome_strand>
        <mrna_strand>TGCTATCGGGCATTTCAACAATTTGTCCCTTCTTTGCCGAAGCGTAGCGCTCCCTTTTACTGCATTTTCTCCTACGACTTTCATCTAGGTTCTTAGAGGCATCTCGGGGGTACAAATCAAGTGTTTTCTGTTAGCAATGGGTTCATCTGCTTCAGTGCATAAAGATCCGAAATCAGCAATGAAGCTCCGTTTTGTCTTTGCATCTAAATCTGACAAGCTTGTGAGTCCCTCACCTATCAAAGATAAACCCCTTGATACTGCTGAAATCAAACTCTCTCTTCCTCAAATCAAACCTCAGCGTTCCCCGGTGCTCCCGCTTAACAGTTTTAGCGACTATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAAGGAGGAGGCCTTTTTTGATTCCCAGGCCTGGTTGGAGTCAGATTGTGATGATGACTTCTTTAGTGTCAAGGGAG...................................................................................................................................................................................................................................................................................................................................................ATTATACACCATCACTTGGAAATACTCCTTCGTGTGGAAATACACCTGTGCATCGAGGTTTGTTGGTCGGTAATCTGCTAGGTAATCGAGCCTCTTTTGGAGAAAGAACTTCTGCTTCTATACCGCAATCTTCTCCAATACACAAGAGGAAGAATTTACTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E270112" ref_strand="+" ref_description="SGN-E270112 [cLEM-7-L19]">
      <seq>tgctatcgggcatttcaacaatttgtcccttctttgccgaagcgtagcgctcccttttactgcattttctcctacgactttcatctaggttcttagaggcatctcggtggtacaaatcaagtgttttctgttagcaatgggttcatctgcttcagtgcataaagatccgaaatcagcaatgaagctccgttttgtctttgcatctaaatctgacaagcttgtgagtccctcacctatcaaagataaaccccttgatactgctgaaatcaaactctctcttcctcaaatcaaacctcagcgttccccggtgctcccgcttaacagttttagcgactatggtagcaaggaggaggccttttttgattcccaggcctggttggagtcagattgtgatgatgacttctttagtgtcaagggagattttacaccatcacttggaaatactccttcgtgtggaaatacacctgtgcatcgaggtttgttggtcggtaatctgctaggtaatcgagcctcttttggagaaagaacttctgcttctataccgcaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="+" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="104088" stop="107026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104388" g_stop="104725" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104726" i_stop="106175" i_length="1450">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106176" g_stop="106256" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="419" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106257" i_stop="106595" i_length="339">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106596" g_stop="106726" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="550" r_length="131" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="+" ref_id="SGN-E270112" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270112" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104388" e_stop="104725"/>
          <exon e_start="106176" e_stop="106256"/>
          <exon e_start="106596" e_stop="106726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTATCGGGCATTTCAACAATTTGTCCCTTCTTTGCCGAAGCGTAGCGCTCCCTTTTACTGCATTTTCTCCTACGACTTTCATCTAGGTTCTTAGAGGCATCTCGGTGGTACAAATCAAGTGTTTTCTGTTAGCAATGGGTTCATCTGCTTCAGTGCATAAAGATCCGAAATCAGCAATGAAGCTCCGTTTTGTCTTTGCATCTAAATCTGACAAGCTTGTGAGTCCCTCACCTATCAAAGATAAACCCCTTGATACTGCTGAAATCAAACTCTCTCTTCCTCAAATCAAACCTCAGCGTTCCCCGGTGCTCCCGCTTAACAGTTTTAGCGACTATGGTACCATCTTCTTCTTTTCAATTCCTGTCCGATTATTCAGTTTGTTTTTATGTTTATTTGACGTTGATTTCACTTTATGTTCGACGCTTTTGTGTGGGGTTTCTCGTGATGAGAAAAAAAAAGAGGAGGAAAATTGATGCTTTTCATGTGAAACACTTTTTTTTCAGTTTCAAATTTTGAGTTAGTCTGATGTTGGATTACTAGTTTCTTCTATTTGCTAAGGAAATTGGTTGTTCTACAGAAATTTTATCTAATGTTTAAGAAAATTGTAGAGATGTTCTGTTTATCTGAAAGGCATGATTAACAGGTTGATGGTCTTCCAACTAATAGTTCCTTTGTTGGATAATAACTATTTGTTGAATGAACTTTAACTCCATCACTAACACAATTCCTGTTCAAAATTGTCTTCTTATGAAACTTAGAAAATTACAATTTTAATGACTTAAGTGTGTTCTTCTTATTATTTTTTTGTTTGCTGTCTATTCCTTTGTGCCATTAGGTAAGATTGACTGACGAGCTACTGTTAAAATCATGTGCAATGCCAAAATTCTCTTATTGGTGGGGTCATTTGCAGCACATGTTGTGGCACTACGACCTTTCAAAAAAAAAGAAAGAAAGAAAGAAAGAGACACCCTGTAGCTTAATGTGAATAATTCAATAGAAGAGTCATTTTCAATATTCTTTATATTCAACCCAGATGTATTTGTCAATATAAAAATGGATGTATAATATAAGTGTAATCCATGTACATTTAGTGTAAAAAGTAAACAGTGAAATACAGGCTAAAGACACCGTTTTACAGGGAAAATGGCTTCCTTGTTTCATTTCATCATCTGTGCAAGCAGCTGTAACCTTAGTTGAGATTTGCACGTTTAATTCAGCGACTTTTCTTGTTTCATAATCCTTGTCAATTGTGTTACATGTAATTTTCCTCTTGTCATGTGGTTTTGTTACAACAGTCAGGGGATCCTTCATTGACTTCTTTCAAAGCAATCCGACGAATCATCTTGTTTTCTATGATATTTATGTGGTAATAGCACTCTCTAGTCAAAATAAGTTTCTTCTGTGTATTTTATGCCATTGACAAAATGTAGTGCAGTTTTTTACTGTAAAGACTTAACTAATGCCTACTAGTTTAGTTTTCTCAGAAGTGTCTAACTAGTTCTGTTTCTTGTTTATTTTTTTATATGGGTGAATTTGTTTTGAATGTGATGTGTTGGGATTGTGGTGGAATAATGGTGAAAACGACATGCTCTATGCTTTCTTTCAGTTTCTTCTTTCGTTTCCCTTGTATCCTCAAACTGATTTCATGAAGCAGAGCCCACATTGTGAAGCTTTCAATATATTTTTAATTGAATTATGTTCATGTTATTGTGCATTTGTCATTGTTACTAGTATTCTCATGATACATTTTATCGTTTCTAATAGCCTAAGGCATTCTTTTGTTTAGGTAGCAAGGAGGAGGCCTTTTTTGATTCCCAGGCCTGGTTGGAGTCAGATTGTGATGATGACTTCTTTAGTGTCAAGGGAGGTGAGACAGAACTTTGATACCTGATGCTCTTTCCATATTCTCCGTTCATCTTTCTTCTCATGTTATTATAGTCATAAAATTGAAAATGGCTATTATGCATTCAACTGAATCATTAGTAATGACTGCTAAGGCAATTTGAGAAGACCAGATCTAGAAAATCAGGTATTGGAAGTACCTGACCTTTTTGTTCAAGAAAAGTGCCACACCAGTGCGTAGTTTTTGCTAAAATAGGGATCTAAGTGTCAGGAACACTTTTTATTCTTGTTGTGAGTAGCCACCTTCAATTTACACTTGCAATCATTATCATTAATTCTTGTAGTCTATCTGTCTTCAATGCAGATTTTACACCATCACTTGGAAATACTCCTTCGTGTGGAAATACACCTGTGCATCGAGGTTTGTTGGTCGGTAATCTGCTAGGTAATCGAGCCTCTTTTGGAGAAAGAACTTCTGCTTCTATACCGCAATCT</genome_strand>
        <mrna_strand>TGCTATCGGGCATTTCAACAATTTGTCCCTTCTTTGCCGAAGCGTAGCGCTCCCTTTTACTGCATTTTCTCCTACGACTTTCATCTAGGTTCTTAGAGGCATCTCGGTGGTACAAATCAAGTGTTTTCTGTTAGCAATGGGTTCATCTGCTTCAGTGCATAAAGATCCGAAATCAGCAATGAAGCTCCGTTTTGTCTTTGCATCTAAATCTGACAAGCTTGTGAGTCCCTCACCTATCAAAGATAAACCCCTTGATACTGCTGAAATCAAACTCTCTCTTCCTCAAATCAAACCTCAGCGTTCCCCGGTGCTCCCGCTTAACAGTTTTAGCGACTATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAAGGAGGAGGCCTTTTTTGATTCCCAGGCCTGGTTGGAGTCAGATTGTGATGATGACTTCTTTAGTGTCAAGGGAG...................................................................................................................................................................................................................................................................................................................................................ATTTTACACCATCACTTGGAAATACTCCTTCGTGTGGAAATACACCTGTGCATCGAGGTTTGTTGGTCGGTAATCTGCTAGGTAATCGAGCCTCTTTTGGAGAAAGAACTTCTGCTTCTATACCGCAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E233510" ref_strand="+" ref_description="SGN-E233510 [cLED-9-O17]">
      <seq>tgctatcgggcatttcaacaatttgtcccttctttgccgaagcgtagcgctcccttttactgcattttctcctacgactttcatctaggttcttagaggcatctcggtggtacaaatcaagtgttttctgttagcaatgggttcatctgcttcagtgcataaagatccgaaatcagcaatgaagctccgttttgtctttgcatctaaatctgacaagcttgtgagtccctcacctatcaaagataaaccccttgatactgctgaaatcaaactctctcttcctcaaatcaaacctcagcgttccccggtgctcccgcttaacagttttagcgactatggtagcaaggaggaggccttttttgattcccaggcctggttggagtcagattgtgatgatgacttctttagtgtcaagggagattttacaccatcacttggaaatactccttcgtgtggaaatacacctgtgcatcgaggtttgttggtcggtaatctgctaggtaatcgagcctcttttggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="+" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="104088" stop="106997"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104388" g_stop="104725" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104726" i_stop="106175" i_length="1450">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106176" g_stop="106256" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="419" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106257" i_stop="106595" i_length="339">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106596" g_stop="106697" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="521" r_length="102" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="+" ref_id="SGN-E233510" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233510" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104388" e_stop="104725"/>
          <exon e_start="106176" e_stop="106256"/>
          <exon e_start="106596" e_stop="106697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTATCGGGCATTTCAACAATTTGTCCCTTCTTTGCCGAAGCGTAGCGCTCCCTTTTACTGCATTTTCTCCTACGACTTTCATCTAGGTTCTTAGAGGCATCTCGGTGGTACAAATCAAGTGTTTTCTGTTAGCAATGGGTTCATCTGCTTCAGTGCATAAAGATCCGAAATCAGCAATGAAGCTCCGTTTTGTCTTTGCATCTAAATCTGACAAGCTTGTGAGTCCCTCACCTATCAAAGATAAACCCCTTGATACTGCTGAAATCAAACTCTCTCTTCCTCAAATCAAACCTCAGCGTTCCCCGGTGCTCCCGCTTAACAGTTTTAGCGACTATGGTACCATCTTCTTCTTTTCAATTCCTGTCCGATTATTCAGTTTGTTTTTATGTTTATTTGACGTTGATTTCACTTTATGTTCGACGCTTTTGTGTGGGGTTTCTCGTGATGAGAAAAAAAAAGAGGAGGAAAATTGATGCTTTTCATGTGAAACACTTTTTTTTCAGTTTCAAATTTTGAGTTAGTCTGATGTTGGATTACTAGTTTCTTCTATTTGCTAAGGAAATTGGTTGTTCTACAGAAATTTTATCTAATGTTTAAGAAAATTGTAGAGATGTTCTGTTTATCTGAAAGGCATGATTAACAGGTTGATGGTCTTCCAACTAATAGTTCCTTTGTTGGATAATAACTATTTGTTGAATGAACTTTAACTCCATCACTAACACAATTCCTGTTCAAAATTGTCTTCTTATGAAACTTAGAAAATTACAATTTTAATGACTTAAGTGTGTTCTTCTTATTATTTTTTTGTTTGCTGTCTATTCCTTTGTGCCATTAGGTAAGATTGACTGACGAGCTACTGTTAAAATCATGTGCAATGCCAAAATTCTCTTATTGGTGGGGTCATTTGCAGCACATGTTGTGGCACTACGACCTTTCAAAAAAAAAGAAAGAAAGAAAGAAAGAGACACCCTGTAGCTTAATGTGAATAATTCAATAGAAGAGTCATTTTCAATATTCTTTATATTCAACCCAGATGTATTTGTCAATATAAAAATGGATGTATAATATAAGTGTAATCCATGTACATTTAGTGTAAAAAGTAAACAGTGAAATACAGGCTAAAGACACCGTTTTACAGGGAAAATGGCTTCCTTGTTTCATTTCATCATCTGTGCAAGCAGCTGTAACCTTAGTTGAGATTTGCACGTTTAATTCAGCGACTTTTCTTGTTTCATAATCCTTGTCAATTGTGTTACATGTAATTTTCCTCTTGTCATGTGGTTTTGTTACAACAGTCAGGGGATCCTTCATTGACTTCTTTCAAAGCAATCCGACGAATCATCTTGTTTTCTATGATATTTATGTGGTAATAGCACTCTCTAGTCAAAATAAGTTTCTTCTGTGTATTTTATGCCATTGACAAAATGTAGTGCAGTTTTTTACTGTAAAGACTTAACTAATGCCTACTAGTTTAGTTTTCTCAGAAGTGTCTAACTAGTTCTGTTTCTTGTTTATTTTTTTATATGGGTGAATTTGTTTTGAATGTGATGTGTTGGGATTGTGGTGGAATAATGGTGAAAACGACATGCTCTATGCTTTCTTTCAGTTTCTTCTTTCGTTTCCCTTGTATCCTCAAACTGATTTCATGAAGCAGAGCCCACATTGTGAAGCTTTCAATATATTTTTAATTGAATTATGTTCATGTTATTGTGCATTTGTCATTGTTACTAGTATTCTCATGATACATTTTATCGTTTCTAATAGCCTAAGGCATTCTTTTGTTTAGGTAGCAAGGAGGAGGCCTTTTTTGATTCCCAGGCCTGGTTGGAGTCAGATTGTGATGATGACTTCTTTAGTGTCAAGGGAGGTGAGACAGAACTTTGATACCTGATGCTCTTTCCATATTCTCCGTTCATCTTTCTTCTCATGTTATTATAGTCATAAAATTGAAAATGGCTATTATGCATTCAACTGAATCATTAGTAATGACTGCTAAGGCAATTTGAGAAGACCAGATCTAGAAAATCAGGTATTGGAAGTACCTGACCTTTTTGTTCAAGAAAAGTGCCACACCAGTGCGTAGTTTTTGCTAAAATAGGGATCTAAGTGTCAGGAACACTTTTTATTCTTGTTGTGAGTAGCCACCTTCAATTTACACTTGCAATCATTATCATTAATTCTTGTAGTCTATCTGTCTTCAATGCAGATTTTACACCATCACTTGGAAATACTCCTTCGTGTGGAAATACACCTGTGCATCGAGGTTTGTTGGTCGGTAATCTGCTAGGTAATCGAGCCTCTTTTGGAG</genome_strand>
        <mrna_strand>TGCTATCGGGCATTTCAACAATTTGTCCCTTCTTTGCCGAAGCGTAGCGCTCCCTTTTACTGCATTTTCTCCTACGACTTTCATCTAGGTTCTTAGAGGCATCTCGGTGGTACAAATCAAGTGTTTTCTGTTAGCAATGGGTTCATCTGCTTCAGTGCATAAAGATCCGAAATCAGCAATGAAGCTCCGTTTTGTCTTTGCATCTAAATCTGACAAGCTTGTGAGTCCCTCACCTATCAAAGATAAACCCCTTGATACTGCTGAAATCAAACTCTCTCTTCCTCAAATCAAACCTCAGCGTTCCCCGGTGCTCCCGCTTAACAGTTTTAGCGACTATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAAGGAGGAGGCCTTTTTTGATTCCCAGGCCTGGTTGGAGTCAGATTGTGATGATGACTTCTTTAGTGTCAAGGGAG...................................................................................................................................................................................................................................................................................................................................................ATTTTACACCATCACTTGGAAATACTCCTTCGTGTGGAAATACACCTGTGCATCGAGGTTTGTTGGTCGGTAATCTGCTAGGTAATCGAGCCTCTTTTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E247857" ref_strand="+" ref_description="SGN-E247857 [cLEF-47-O21]">
      <seq>gcatttcaacaatttgtcccttctttgccgaagcgtggcgctcccttttactgcattttctcctacgactttcatctaggttcttagaggcatctcggtggtacaaatcaagtgttttctgttagcaatgggttcatctgcttcagtgcataaagatccgaaatcagcaatgaagctccgttttgtctttgcatctaaatctgacaagcttgtgagtccctcacctatcaaagataaaccccttgatactgctgaaatcaaactctctcttcctcaaatcaaacctcagcgttccccggtgctcccgcttaacagttttagcgactatggtagcaaggaggaggccttttttgattcccaggcctggttggagtcagattgtgatgatgacttctttagtgtcaagggagattttacaccatcacttggaaatactccttcgtgtggaaatacacctgtgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="+" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="104097" stop="106947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104397" g_stop="104725" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104726" i_stop="106175" i_length="1450">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106176" g_stop="106256" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="410" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106257" i_stop="106595" i_length="339">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106596" g_stop="106647" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="462" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="+" ref_id="SGN-E247857" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247857" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104397" e_stop="104725"/>
          <exon e_start="106176" e_stop="106256"/>
          <exon e_start="106596" e_stop="106647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTTCAACAATTTGTCCCTTCTTTGCCGAAGCGTAGCGCTCCCTTTTACTGCATTTTCTCCTACGACTTTCATCTAGGTTCTTAGAGGCATCTCGGTGGTACAAATCAAGTGTTTTCTGTTAGCAATGGGTTCATCTGCTTCAGTGCATAAAGATCCGAAATCAGCAATGAAGCTCCGTTTTGTCTTTGCATCTAAATCTGACAAGCTTGTGAGTCCCTCACCTATCAAAGATAAACCCCTTGATACTGCTGAAATCAAACTCTCTCTTCCTCAAATCAAACCTCAGCGTTCCCCGGTGCTCCCGCTTAACAGTTTTAGCGACTATGGTACCATCTTCTTCTTTTCAATTCCTGTCCGATTATTCAGTTTGTTTTTATGTTTATTTGACGTTGATTTCACTTTATGTTCGACGCTTTTGTGTGGGGTTTCTCGTGATGAGAAAAAAAAAGAGGAGGAAAATTGATGCTTTTCATGTGAAACACTTTTTTTTCAGTTTCAAATTTTGAGTTAGTCTGATGTTGGATTACTAGTTTCTTCTATTTGCTAAGGAAATTGGTTGTTCTACAGAAATTTTATCTAATGTTTAAGAAAATTGTAGAGATGTTCTGTTTATCTGAAAGGCATGATTAACAGGTTGATGGTCTTCCAACTAATAGTTCCTTTGTTGGATAATAACTATTTGTTGAATGAACTTTAACTCCATCACTAACACAATTCCTGTTCAAAATTGTCTTCTTATGAAACTTAGAAAATTACAATTTTAATGACTTAAGTGTGTTCTTCTTATTATTTTTTTGTTTGCTGTCTATTCCTTTGTGCCATTAGGTAAGATTGACTGACGAGCTACTGTTAAAATCATGTGCAATGCCAAAATTCTCTTATTGGTGGGGTCATTTGCAGCACATGTTGTGGCACTACGACCTTTCAAAAAAAAAGAAAGAAAGAAAGAAAGAGACACCCTGTAGCTTAATGTGAATAATTCAATAGAAGAGTCATTTTCAATATTCTTTATATTCAACCCAGATGTATTTGTCAATATAAAAATGGATGTATAATATAAGTGTAATCCATGTACATTTAGTGTAAAAAGTAAACAGTGAAATACAGGCTAAAGACACCGTTTTACAGGGAAAATGGCTTCCTTGTTTCATTTCATCATCTGTGCAAGCAGCTGTAACCTTAGTTGAGATTTGCACGTTTAATTCAGCGACTTTTCTTGTTTCATAATCCTTGTCAATTGTGTTACATGTAATTTTCCTCTTGTCATGTGGTTTTGTTACAACAGTCAGGGGATCCTTCATTGACTTCTTTCAAAGCAATCCGACGAATCATCTTGTTTTCTATGATATTTATGTGGTAATAGCACTCTCTAGTCAAAATAAGTTTCTTCTGTGTATTTTATGCCATTGACAAAATGTAGTGCAGTTTTTTACTGTAAAGACTTAACTAATGCCTACTAGTTTAGTTTTCTCAGAAGTGTCTAACTAGTTCTGTTTCTTGTTTATTTTTTTATATGGGTGAATTTGTTTTGAATGTGATGTGTTGGGATTGTGGTGGAATAATGGTGAAAACGACATGCTCTATGCTTTCTTTCAGTTTCTTCTTTCGTTTCCCTTGTATCCTCAAACTGATTTCATGAAGCAGAGCCCACATTGTGAAGCTTTCAATATATTTTTAATTGAATTATGTTCATGTTATTGTGCATTTGTCATTGTTACTAGTATTCTCATGATACATTTTATCGTTTCTAATAGCCTAAGGCATTCTTTTGTTTAGGTAGCAAGGAGGAGGCCTTTTTTGATTCCCAGGCCTGGTTGGAGTCAGATTGTGATGATGACTTCTTTAGTGTCAAGGGAGGTGAGACAGAACTTTGATACCTGATGCTCTTTCCATATTCTCCGTTCATCTTTCTTCTCATGTTATTATAGTCATAAAATTGAAAATGGCTATTATGCATTCAACTGAATCATTAGTAATGACTGCTAAGGCAATTTGAGAAGACCAGATCTAGAAAATCAGGTATTGGAAGTACCTGACCTTTTTGTTCAAGAAAAGTGCCACACCAGTGCGTAGTTTTTGCTAAAATAGGGATCTAAGTGTCAGGAACACTTTTTATTCTTGTTGTGAGTAGCCACCTTCAATTTACACTTGCAATCATTATCATTAATTCTTGTAGTCTATCTGTCTTCAATGCAGATTTTACACCATCACTTGGAAATACTCCTTCGTGTGGAAATACACCTGTGCA</genome_strand>
        <mrna_strand>GCATTTCAACAATTTGTCCCTTCTTTGCCGAAGCGTGGCGCTCCCTTTTACTGCATTTTCTCCTACGACTTTCATCTAGGTTCTTAGAGGCATCTCGGTGGTACAAATCAAGTGTTTTCTGTTAGCAATGGGTTCATCTGCTTCAGTGCATAAAGATCCGAAATCAGCAATGAAGCTCCGTTTTGTCTTTGCATCTAAATCTGACAAGCTTGTGAGTCCCTCACCTATCAAAGATAAACCCCTTGATACTGCTGAAATCAAACTCTCTCTTCCTCAAATCAAACCTCAGCGTTCCCCGGTGCTCCCGCTTAACAGTTTTAGCGACTATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAAGGAGGAGGCCTTTTTTGATTCCCAGGCCTGGTTGGAGTCAGATTGTGATGATGACTTCTTTAGTGTCAAGGGAG...................................................................................................................................................................................................................................................................................................................................................ATTTTACACCATCACTTGGAAATACTCCTTCGTGTGGAAATACACCTGTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E308093" ref_strand="+" ref_description="SGN-E308093 [cLEY-14-P18]">
      <seq>tttcaacaatttgtcccttctttgccgaagcgtagcgctcccttttactgcattttctcctacgactttcatctaggttcttagaggcatctcggtggtacaaatcaagtgttttctgttagcaatgggttcatctgcttcagtgcataaagatccgaaatcagcaatgaagctccgttttgtctttgcatctaaatctgacaagcttgtgagtccctcacctatcaaagataaaccccttgatactgctgaaatcaaactctctcttcctcaaatcaaacctcagcgttccccggtgctcccgcttaacagttttagcgactatggtagcaaggaggaggccttttttgattcccaggcctggttggagtcagattgtgatgatgacttctttagtgtcaagggagattttacaccatcacttggaaatactccttcgtgtggaaatacacctgtgcatcgaggtttgttggtcggtaatctgctaggtaatcgagcctcttttggagaaagaacttctgcttctataccgcaatcttctccaatacacaagaggaagaatttacttgagcttttcaaagaaagctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="+" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="104100" stop="107077"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104400" g_stop="104725" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104726" i_stop="106175" i_length="1450">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106176" g_stop="106256" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="407" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106257" i_stop="106595" i_length="339">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106596" g_stop="106777" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="589" r_length="182" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="+" ref_id="SGN-E308093" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308093" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104400" e_stop="104725"/>
          <exon e_start="106176" e_stop="106256"/>
          <exon e_start="106596" e_stop="106777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAACAATTTGTCCCTTCTTTGCCGAAGCGTAGCGCTCCCTTTTACTGCATTTTCTCCTACGACTTTCATCTAGGTTCTTAGAGGCATCTCGGTGGTACAAATCAAGTGTTTTCTGTTAGCAATGGGTTCATCTGCTTCAGTGCATAAAGATCCGAAATCAGCAATGAAGCTCCGTTTTGTCTTTGCATCTAAATCTGACAAGCTTGTGAGTCCCTCACCTATCAAAGATAAACCCCTTGATACTGCTGAAATCAAACTCTCTCTTCCTCAAATCAAACCTCAGCGTTCCCCGGTGCTCCCGCTTAACAGTTTTAGCGACTATGGTACCATCTTCTTCTTTTCAATTCCTGTCCGATTATTCAGTTTGTTTTTATGTTTATTTGACGTTGATTTCACTTTATGTTCGACGCTTTTGTGTGGGGTTTCTCGTGATGAGAAAAAAAAAGAGGAGGAAAATTGATGCTTTTCATGTGAAACACTTTTTTTTCAGTTTCAAATTTTGAGTTAGTCTGATGTTGGATTACTAGTTTCTTCTATTTGCTAAGGAAATTGGTTGTTCTACAGAAATTTTATCTAATGTTTAAGAAAATTGTAGAGATGTTCTGTTTATCTGAAAGGCATGATTAACAGGTTGATGGTCTTCCAACTAATAGTTCCTTTGTTGGATAATAACTATTTGTTGAATGAACTTTAACTCCATCACTAACACAATTCCTGTTCAAAATTGTCTTCTTATGAAACTTAGAAAATTACAATTTTAATGACTTAAGTGTGTTCTTCTTATTATTTTTTTGTTTGCTGTCTATTCCTTTGTGCCATTAGGTAAGATTGACTGACGAGCTACTGTTAAAATCATGTGCAATGCCAAAATTCTCTTATTGGTGGGGTCATTTGCAGCACATGTTGTGGCACTACGACCTTTCAAAAAAAAAGAAAGAAAGAAAGAAAGAGACACCCTGTAGCTTAATGTGAATAATTCAATAGAAGAGTCATTTTCAATATTCTTTATATTCAACCCAGATGTATTTGTCAATATAAAAATGGATGTATAATATAAGTGTAATCCATGTACATTTAGTGTAAAAAGTAAACAGTGAAATACAGGCTAAAGACACCGTTTTACAGGGAAAATGGCTTCCTTGTTTCATTTCATCATCTGTGCAAGCAGCTGTAACCTTAGTTGAGATTTGCACGTTTAATTCAGCGACTTTTCTTGTTTCATAATCCTTGTCAATTGTGTTACATGTAATTTTCCTCTTGTCATGTGGTTTTGTTACAACAGTCAGGGGATCCTTCATTGACTTCTTTCAAAGCAATCCGACGAATCATCTTGTTTTCTATGATATTTATGTGGTAATAGCACTCTCTAGTCAAAATAAGTTTCTTCTGTGTATTTTATGCCATTGACAAAATGTAGTGCAGTTTTTTACTGTAAAGACTTAACTAATGCCTACTAGTTTAGTTTTCTCAGAAGTGTCTAACTAGTTCTGTTTCTTGTTTATTTTTTTATATGGGTGAATTTGTTTTGAATGTGATGTGTTGGGATTGTGGTGGAATAATGGTGAAAACGACATGCTCTATGCTTTCTTTCAGTTTCTTCTTTCGTTTCCCTTGTATCCTCAAACTGATTTCATGAAGCAGAGCCCACATTGTGAAGCTTTCAATATATTTTTAATTGAATTATGTTCATGTTATTGTGCATTTGTCATTGTTACTAGTATTCTCATGATACATTTTATCGTTTCTAATAGCCTAAGGCATTCTTTTGTTTAGGTAGCAAGGAGGAGGCCTTTTTTGATTCCCAGGCCTGGTTGGAGTCAGATTGTGATGATGACTTCTTTAGTGTCAAGGGAGGTGAGACAGAACTTTGATACCTGATGCTCTTTCCATATTCTCCGTTCATCTTTCTTCTCATGTTATTATAGTCATAAAATTGAAAATGGCTATTATGCATTCAACTGAATCATTAGTAATGACTGCTAAGGCAATTTGAGAAGACCAGATCTAGAAAATCAGGTATTGGAAGTACCTGACCTTTTTGTTCAAGAAAAGTGCCACACCAGTGCGTAGTTTTTGCTAAAATAGGGATCTAAGTGTCAGGAACACTTTTTATTCTTGTTGTGAGTAGCCACCTTCAATTTACACTTGCAATCATTATCATTAATTCTTGTAGTCTATCTGTCTTCAATGCAGATTTTACACCATCACTTGGAAATACTCCTTCGTGTGGAAATACACCTGTGCATCGAGGTTTGTTGGTCGGTAATCTGCTAGGTAATCGAGCCTCTTTTGGAGAAAGAACTTCTGCTTCTATACCGCAATCTTCTCCAATACACAAGAGGAAGAATTTACTTGAGCTTTTCAAAGAAAGCTCA</genome_strand>
        <mrna_strand>TTTCAACAATTTGTCCCTTCTTTGCCGAAGCGTAGCGCTCCCTTTTACTGCATTTTCTCCTACGACTTTCATCTAGGTTCTTAGAGGCATCTCGGTGGTACAAATCAAGTGTTTTCTGTTAGCAATGGGTTCATCTGCTTCAGTGCATAAAGATCCGAAATCAGCAATGAAGCTCCGTTTTGTCTTTGCATCTAAATCTGACAAGCTTGTGAGTCCCTCACCTATCAAAGATAAACCCCTTGATACTGCTGAAATCAAACTCTCTCTTCCTCAAATCAAACCTCAGCGTTCCCCGGTGCTCCCGCTTAACAGTTTTAGCGACTATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAAGGAGGAGGCCTTTTTTGATTCCCAGGCCTGGTTGGAGTCAGATTGTGATGATGACTTCTTTAGTGTCAAGGGAG...................................................................................................................................................................................................................................................................................................................................................ATTTTACACCATCACTTGGAAATACTCCTTCGTGTGGAAATACACCTGTGCATCGAGGTTTGTTGGTCGGTAATCTGCTAGGTAATCGAGCCTCTTTTGGAGAAAGAACTTCTGCTTCTATACCGCAATCTTCTCCAATACACAAGAGGAAGAATTTACTTGAGCTTTTCAAAGAAAGCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E702168" ref_strand="+" ref_description="SGN-E702168 [FA17DH12]">
      <seq>caactatttgtcccttctttgccgaagcgtagcgctcccttttactgcattttctcctacgactttcatctaggttcttagaggcatctcggtggtacaaatcaagtgttttctgttagcaatgggttcatctgcttcagtgcataaagatccgaaatcagcaatgaagctccgttttgtctttgcatctaaatctgacaagcttgtgagtccctcacctatcaaagataaaccccttgatactgctgaaatcaaactctctcttcctcaaatcaaacctcagcgttccccggtgctcccgcttaacagttttagcgactatggtagcaaggaggaggccttttttgattcccaggcctggttggagtcagattgtgatgatgacttctttagtgtcaagggagattttacaccatcacttggaaatactccttcgtgtggaaatacacctgtgcatcgaggtttgttggtcggtaatctgctaggtaatcgagcctcttttggagaaagaacttctgcttctataccgcaatcttctccaatacacaagaggaagaatttacttgagcttttcaaagaaagctcaagaaaccggaacccgaatgagcatggtgctgaagacaacgaaaatatacaggcagctggtctacagctaccacctanatccacatttagcacacctcatgtgccggtgtctagtggcaagagcacccctgtaggaaagtacaaaagtgaggcaaaatcgctgaggtcagtacaatgttgtcttcccaggttgagtggcagttttaggggaaagaggaagagtatgagtcctgcaaataccgtgggctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="+" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="104103" stop="107327"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104403" g_stop="104725" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="323" r_length="323" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104726" i_stop="106175" i_length="1450">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106176" g_stop="106256" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="404" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106257" i_stop="106595" i_length="339">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106596" g_stop="107027" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="836" r_length="432" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="+" ref_id="SGN-E702168" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>836</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104403" e_stop="104725"/>
          <exon e_start="106176" e_stop="106256"/>
          <exon e_start="106596" e_stop="107027"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAATTTGTCCCTTCTTTGCCGAAGCGTAGCGCTCCCTTTTACTGCATTTTCTCCTACGACTTTCATCTAGGTTCTTAGAGGCATCTCGGTGGTACAAATCAAGTGTTTTCTGTTAGCAATGGGTTCATCTGCTTCAGTGCATAAAGATCCGAAATCAGCAATGAAGCTCCGTTTTGTCTTTGCATCTAAATCTGACAAGCTTGTGAGTCCCTCACCTATCAAAGATAAACCCCTTGATACTGCTGAAATCAAACTCTCTCTTCCTCAAATCAAACCTCAGCGTTCCCCGGTGCTCCCGCTTAACAGTTTTAGCGACTATGGTACCATCTTCTTCTTTTCAATTCCTGTCCGATTATTCAGTTTGTTTTTATGTTTATTTGACGTTGATTTCACTTTATGTTCGACGCTTTTGTGTGGGGTTTCTCGTGATGAGAAAAAAAAAGAGGAGGAAAATTGATGCTTTTCATGTGAAACACTTTTTTTTCAGTTTCAAATTTTGAGTTAGTCTGATGTTGGATTACTAGTTTCTTCTATTTGCTAAGGAAATTGGTTGTTCTACAGAAATTTTATCTAATGTTTAAGAAAATTGTAGAGATGTTCTGTTTATCTGAAAGGCATGATTAACAGGTTGATGGTCTTCCAACTAATAGTTCCTTTGTTGGATAATAACTATTTGTTGAATGAACTTTAACTCCATCACTAACACAATTCCTGTTCAAAATTGTCTTCTTATGAAACTTAGAAAATTACAATTTTAATGACTTAAGTGTGTTCTTCTTATTATTTTTTTGTTTGCTGTCTATTCCTTTGTGCCATTAGGTAAGATTGACTGACGAGCTACTGTTAAAATCATGTGCAATGCCAAAATTCTCTTATTGGTGGGGTCATTTGCAGCACATGTTGTGGCACTACGACCTTTCAAAAAAAAAGAAAGAAAGAAAGAAAGAGACACCCTGTAGCTTAATGTGAATAATTCAATAGAAGAGTCATTTTCAATATTCTTTATATTCAACCCAGATGTATTTGTCAATATAAAAATGGATGTATAATATAAGTGTAATCCATGTACATTTAGTGTAAAAAGTAAACAGTGAAATACAGGCTAAAGACACCGTTTTACAGGGAAAATGGCTTCCTTGTTTCATTTCATCATCTGTGCAAGCAGCTGTAACCTTAGTTGAGATTTGCACGTTTAATTCAGCGACTTTTCTTGTTTCATAATCCTTGTCAATTGTGTTACATGTAATTTTCCTCTTGTCATGTGGTTTTGTTACAACAGTCAGGGGATCCTTCATTGACTTCTTTCAAAGCAATCCGACGAATCATCTTGTTTTCTATGATATTTATGTGGTAATAGCACTCTCTAGTCAAAATAAGTTTCTTCTGTGTATTTTATGCCATTGACAAAATGTAGTGCAGTTTTTTACTGTAAAGACTTAACTAATGCCTACTAGTTTAGTTTTCTCAGAAGTGTCTAACTAGTTCTGTTTCTTGTTTATTTTTTTATATGGGTGAATTTGTTTTGAATGTGATGTGTTGGGATTGTGGTGGAATAATGGTGAAAACGACATGCTCTATGCTTTCTTTCAGTTTCTTCTTTCGTTTCCCTTGTATCCTCAAACTGATTTCATGAAGCAGAGCCCACATTGTGAAGCTTTCAATATATTTTTAATTGAATTATGTTCATGTTATTGTGCATTTGTCATTGTTACTAGTATTCTCATGATACATTTTATCGTTTCTAATAGCCTAAGGCATTCTTTTGTTTAGGTAGCAAGGAGGAGGCCTTTTTTGATTCCCAGGCCTGGTTGGAGTCAGATTGTGATGATGACTTCTTTAGTGTCAAGGGAGGTGAGACAGAACTTTGATACCTGATGCTCTTTCCATATTCTCCGTTCATCTTTCTTCTCATGTTATTATAGTCATAAAATTGAAAATGGCTATTATGCATTCAACTGAATCATTAGTAATGACTGCTAAGGCAATTTGAGAAGACCAGATCTAGAAAATCAGGTATTGGAAGTACCTGACCTTTTTGTTCAAGAAAAGTGCCACACCAGTGCGTAGTTTTTGCTAAAATAGGGATCTAAGTGTCAGGAACACTTTTTATTCTTGTTGTGAGTAGCCACCTTCAATTTACACTTGCAATCATTATCATTAATTCTTGTAGTCTATCTGTCTTCAATGCAGATTTTACACCATCACTTGGAAATACTCCTTCGTGTGGAAATACACCTGTGCATCGAGGTTTGTTGGTCGGTAATCTGCTAGGTAATCGAGCCTCTTTTGGAGAAAGAACTTCTGCTTCTATACCGCAATCTTCTCCAATACACAAGAGGAAGAATTTACTTGAGCTTTTCAAAGAAAGCTCAAGAAACCGGAACCCGAATGAGCATGGTGCTGAAGACAACGAAAATATACAGGCAGCTGGTCTACAGCTACCACCTAAATCCACATTTAGCACACCTCATGTGCCGGTGTCTAGTGGCAAGAGCACCCCTGTAGGAAAGTACAAAAGTGAGGCAAAATCGCTGAGGTCAGTACAATGTTGTCTTCCCAGGTTGAGTGGCAGTTTTAGGGAAAAGAGGAAGAGTATGAGTCCTGCAAATACCGTGGGCTAAT</genome_strand>
        <mrna_strand>CAACTATTTGTCCCTTCTTTGCCGAAGCGTAGCGCTCCCTTTTACTGCATTTTCTCCTACGACTTTCATCTAGGTTCTTAGAGGCATCTCGGTGGTACAAATCAAGTGTTTTCTGTTAGCAATGGGTTCATCTGCTTCAGTGCATAAAGATCCGAAATCAGCAATGAAGCTCCGTTTTGTCTTTGCATCTAAATCTGACAAGCTTGTGAGTCCCTCACCTATCAAAGATAAACCCCTTGATACTGCTGAAATCAAACTCTCTCTTCCTCAAATCAAACCTCAGCGTTCCCCGGTGCTCCCGCTTAACAGTTTTAGCGACTATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAAGGAGGAGGCCTTTTTTGATTCCCAGGCCTGGTTGGAGTCAGATTGTGATGATGACTTCTTTAGTGTCAAGGGAG...................................................................................................................................................................................................................................................................................................................................................ATTTTACACCATCACTTGGAAATACTCCTTCGTGTGGAAATACACCTGTGCATCGAGGTTTGTTGGTCGGTAATCTGCTAGGTAATCGAGCCTCTTTTGGAGAAAGAACTTCTGCTTCTATACCGCAATCTTCTCCAATACACAAGAGGAAGAATTTACTTGAGCTTTTCAAAGAAAGCTCAAGAAACCGGAACCCGAATGAGCATGGTGCTGAAGACAACGAAAATATACAGGCAGCTGGTCTACAGCTACCACCTANATCCACATTTAGCACACCTCATGTGCCGGTGTCTAGTGGCAAGAGCACCCCTGTAGGAAAGTACAAAAGTGAGGCAAAATCGCTGAGGTCAGTACAATGTTGTCTTCCCAGGTTGAGTGGCAGTTTTAGGGGAAAGAGGAAGAGTATGAGTCCTGCAAATACCGTGGGCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E212478" ref_strand="+" ref_description="SGN-E212478 [cLEC-74-E9]">
      <seq>aacaatttgtcccttctttgccgaagcgtagcgctcccttttactgcattttctcctacgactttcatctaggttcttagaggcatctcggtggtacaaatcaagtgttttctgttagcaatgggttcatctgcttcagtgcataaagatccgaaatcagcaatgaagctccgttttgtctttgcatctaaatctgacaagcttgtgagtccctcacctatcaaagataaaccccttgatactgctgaaatcaaactctctcttcctcaaatcaaacctcagcgttccccggtgctcccgcttaacagttttagcgactatggtagcaaggaggaggccttttttgattcccaggcctggttggagtcagattgtgatgatgacttctttagtgtcaagggagtctatctgtcttcaatgcagattttacaccatcacttggaaatactccttcgtgtggaaatacacctgtgcatcgaggtttgttggtcggtaatctgctaggtaatcgagcctcttttggagaaagaacttctgcttctataccgcaatcttctccaatacacaagaagaagaatttacttgagcttttcnaagaaagctcaagaaaccggaacccgaatgagcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="+" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="104104" stop="107102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104404" g_stop="104725" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="322" r_length="322" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104726" i_stop="106175" i_length="1450">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106176" g_stop="106256" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="403" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106257" i_stop="106575" i_length="319">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106576" g_stop="106802" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="630" r_length="227" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="+" ref_id="SGN-E212478" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104404" e_stop="104725"/>
          <exon e_start="106176" e_stop="106256"/>
          <exon e_start="106576" e_stop="106802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATTTGTCCCTTCTTTGCCGAAGCGTAGCGCTCCCTTTTACTGCATTTTCTCCTACGACTTTCATCTAGGTTCTTAGAGGCATCTCGGTGGTACAAATCAAGTGTTTTCTGTTAGCAATGGGTTCATCTGCTTCAGTGCATAAAGATCCGAAATCAGCAATGAAGCTCCGTTTTGTCTTTGCATCTAAATCTGACAAGCTTGTGAGTCCCTCACCTATCAAAGATAAACCCCTTGATACTGCTGAAATCAAACTCTCTCTTCCTCAAATCAAACCTCAGCGTTCCCCGGTGCTCCCGCTTAACAGTTTTAGCGACTATGGTACCATCTTCTTCTTTTCAATTCCTGTCCGATTATTCAGTTTGTTTTTATGTTTATTTGACGTTGATTTCACTTTATGTTCGACGCTTTTGTGTGGGGTTTCTCGTGATGAGAAAAAAAAAGAGGAGGAAAATTGATGCTTTTCATGTGAAACACTTTTTTTTCAGTTTCAAATTTTGAGTTAGTCTGATGTTGGATTACTAGTTTCTTCTATTTGCTAAGGAAATTGGTTGTTCTACAGAAATTTTATCTAATGTTTAAGAAAATTGTAGAGATGTTCTGTTTATCTGAAAGGCATGATTAACAGGTTGATGGTCTTCCAACTAATAGTTCCTTTGTTGGATAATAACTATTTGTTGAATGAACTTTAACTCCATCACTAACACAATTCCTGTTCAAAATTGTCTTCTTATGAAACTTAGAAAATTACAATTTTAATGACTTAAGTGTGTTCTTCTTATTATTTTTTTGTTTGCTGTCTATTCCTTTGTGCCATTAGGTAAGATTGACTGACGAGCTACTGTTAAAATCATGTGCAATGCCAAAATTCTCTTATTGGTGGGGTCATTTGCAGCACATGTTGTGGCACTACGACCTTTCAAAAAAAAAGAAAGAAAGAAAGAAAGAGACACCCTGTAGCTTAATGTGAATAATTCAATAGAAGAGTCATTTTCAATATTCTTTATATTCAACCCAGATGTATTTGTCAATATAAAAATGGATGTATAATATAAGTGTAATCCATGTACATTTAGTGTAAAAAGTAAACAGTGAAATACAGGCTAAAGACACCGTTTTACAGGGAAAATGGCTTCCTTGTTTCATTTCATCATCTGTGCAAGCAGCTGTAACCTTAGTTGAGATTTGCACGTTTAATTCAGCGACTTTTCTTGTTTCATAATCCTTGTCAATTGTGTTACATGTAATTTTCCTCTTGTCATGTGGTTTTGTTACAACAGTCAGGGGATCCTTCATTGACTTCTTTCAAAGCAATCCGACGAATCATCTTGTTTTCTATGATATTTATGTGGTAATAGCACTCTCTAGTCAAAATAAGTTTCTTCTGTGTATTTTATGCCATTGACAAAATGTAGTGCAGTTTTTTACTGTAAAGACTTAACTAATGCCTACTAGTTTAGTTTTCTCAGAAGTGTCTAACTAGTTCTGTTTCTTGTTTATTTTTTTATATGGGTGAATTTGTTTTGAATGTGATGTGTTGGGATTGTGGTGGAATAATGGTGAAAACGACATGCTCTATGCTTTCTTTCAGTTTCTTCTTTCGTTTCCCTTGTATCCTCAAACTGATTTCATGAAGCAGAGCCCACATTGTGAAGCTTTCAATATATTTTTAATTGAATTATGTTCATGTTATTGTGCATTTGTCATTGTTACTAGTATTCTCATGATACATTTTATCGTTTCTAATAGCCTAAGGCATTCTTTTGTTTAGGTAGCAAGGAGGAGGCCTTTTTTGATTCCCAGGCCTGGTTGGAGTCAGATTGTGATGATGACTTCTTTAGTGTCAAGGGAGGTGAGACAGAACTTTGATACCTGATGCTCTTTCCATATTCTCCGTTCATCTTTCTTCTCATGTTATTATAGTCATAAAATTGAAAATGGCTATTATGCATTCAACTGAATCATTAGTAATGACTGCTAAGGCAATTTGAGAAGACCAGATCTAGAAAATCAGGTATTGGAAGTACCTGACCTTTTTGTTCAAGAAAAGTGCCACACCAGTGCGTAGTTTTTGCTAAAATAGGGATCTAAGTGTCAGGAACACTTTTTATTCTTGTTGTGAGTAGCCACCTTCAATTTACACTTGCAATCATTATCATTAATTCTTGTAGTCTATCTGTCTTCAATGCAGATTTTACACCATCACTTGGAAATACTCCTTCGTGTGGAAATACACCTGTGCATCGAGGTTTGTTGGTCGGTAATCTGCTAGGTAATCGAGCCTCTTTTGGAGAAAGAACTTCTGCTTCTATACCGCAATCTTCTCCAATACACAAGAGGAAGAATTTACTTGAGCTTTTCAAAGAAAGCTCAAGAAACCGGAACCCGAATGAGCATG</genome_strand>
        <mrna_strand>AACAATTTGTCCCTTCTTTGCCGAAGCGTAGCGCTCCCTTTTACTGCATTTTCTCCTACGACTTTCATCTAGGTTCTTAGAGGCATCTCGGTGGTACAAATCAAGTGTTTTCTGTTAGCAATGGGTTCATCTGCTTCAGTGCATAAAGATCCGAAATCAGCAATGAAGCTCCGTTTTGTCTTTGCATCTAAATCTGACAAGCTTGTGAGTCCCTCACCTATCAAAGATAAACCCCTTGATACTGCTGAAATCAAACTCTCTCTTCCTCAAATCAAACCTCAGCGTTCCCCGGTGCTCCCGCTTAACAGTTTTAGCGACTATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAAGGAGGAGGCCTTTTTTGATTCCCAGGCCTGGTTGGAGTCAGATTGTGATGATGACTTCTTTAGTGTCAAGGGAG...............................................................................................................................................................................................................................................................................................................................TCTATCTGTCTTCAATGCAGATTTTACACCATCACTTGGAAATACTCCTTCGTGTGGAAATACACCTGTGCATCGAGGTTTGTTGGTCGGTAATCTGCTAGGTAATCGAGCCTCTTTTGGAGAAAGAACTTCTGCTTCTATACCGCAATCTTCTCCAATACACAAGAAGAAGAATTTACTTGAGCTTTTCNAAGAAAGCTCAAGAAACCGGAACCCGAATGAGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E209332" ref_strand="+" ref_description="SGN-E209332 [cLEC-53-J6]">
      <seq>gtagcgctcccttttactgcattttctcctacgactttcatctaggttcttagaggcatctcggtggtacaaatcaagtgttttctgttagcaatgggttcatctgcttcagggcataaagatccgaaatcagcaatgaagctccgttatgtctttgcatctaaatctgacaagcttgtgagtccctcacctatcaaagataaaccccttgatactgctgaaatcaaactctctcttcctcaaatcaaacctcagcgttccccggtgctcccgcttaacagttttagcgactatggtagcaaggaggaggccttttttgattcccaggcctggttggagtcagattgtgatgatgacttctttagtgtcaagggagattttacaccatcacttggaaatactccttcgtgtggaaatacacctgtgcatcgaggattgttggtcggtaatctgctaggtaatcgagcctcttttggagaaagaacttctgcttctataccgcaatcttctccaatacacaagaggaagaatttacttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="+" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="104131" stop="107059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104431" g_stop="104725" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="295" r_length="295" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104726" i_stop="106175" i_length="1450">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106176" g_stop="106256" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="376" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106257" i_stop="106595" i_length="339">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106596" g_stop="106759" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="540" r_length="164" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="+" ref_id="SGN-E209332" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104431" e_stop="104725"/>
          <exon e_start="106176" e_stop="106256"/>
          <exon e_start="106596" e_stop="106759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGCGCTCCCTTTTACTGCATTTTCTCCTACGACTTTCATCTAGGTTCTTAGAGGCATCTCGGTGGTACAAATCAAGTGTTTTCTGTTAGCAATGGGTTCATCTGCTTCAGTGCATAAAGATCCGAAATCAGCAATGAAGCTCCGTTTTGTCTTTGCATCTAAATCTGACAAGCTTGTGAGTCCCTCACCTATCAAAGATAAACCCCTTGATACTGCTGAAATCAAACTCTCTCTTCCTCAAATCAAACCTCAGCGTTCCCCGGTGCTCCCGCTTAACAGTTTTAGCGACTATGGTACCATCTTCTTCTTTTCAATTCCTGTCCGATTATTCAGTTTGTTTTTATGTTTATTTGACGTTGATTTCACTTTATGTTCGACGCTTTTGTGTGGGGTTTCTCGTGATGAGAAAAAAAAAGAGGAGGAAAATTGATGCTTTTCATGTGAAACACTTTTTTTTCAGTTTCAAATTTTGAGTTAGTCTGATGTTGGATTACTAGTTTCTTCTATTTGCTAAGGAAATTGGTTGTTCTACAGAAATTTTATCTAATGTTTAAGAAAATTGTAGAGATGTTCTGTTTATCTGAAAGGCATGATTAACAGGTTGATGGTCTTCCAACTAATAGTTCCTTTGTTGGATAATAACTATTTGTTGAATGAACTTTAACTCCATCACTAACACAATTCCTGTTCAAAATTGTCTTCTTATGAAACTTAGAAAATTACAATTTTAATGACTTAAGTGTGTTCTTCTTATTATTTTTTTGTTTGCTGTCTATTCCTTTGTGCCATTAGGTAAGATTGACTGACGAGCTACTGTTAAAATCATGTGCAATGCCAAAATTCTCTTATTGGTGGGGTCATTTGCAGCACATGTTGTGGCACTACGACCTTTCAAAAAAAAAGAAAGAAAGAAAGAAAGAGACACCCTGTAGCTTAATGTGAATAATTCAATAGAAGAGTCATTTTCAATATTCTTTATATTCAACCCAGATGTATTTGTCAATATAAAAATGGATGTATAATATAAGTGTAATCCATGTACATTTAGTGTAAAAAGTAAACAGTGAAATACAGGCTAAAGACACCGTTTTACAGGGAAAATGGCTTCCTTGTTTCATTTCATCATCTGTGCAAGCAGCTGTAACCTTAGTTGAGATTTGCACGTTTAATTCAGCGACTTTTCTTGTTTCATAATCCTTGTCAATTGTGTTACATGTAATTTTCCTCTTGTCATGTGGTTTTGTTACAACAGTCAGGGGATCCTTCATTGACTTCTTTCAAAGCAATCCGACGAATCATCTTGTTTTCTATGATATTTATGTGGTAATAGCACTCTCTAGTCAAAATAAGTTTCTTCTGTGTATTTTATGCCATTGACAAAATGTAGTGCAGTTTTTTACTGTAAAGACTTAACTAATGCCTACTAGTTTAGTTTTCTCAGAAGTGTCTAACTAGTTCTGTTTCTTGTTTATTTTTTTATATGGGTGAATTTGTTTTGAATGTGATGTGTTGGGATTGTGGTGGAATAATGGTGAAAACGACATGCTCTATGCTTTCTTTCAGTTTCTTCTTTCGTTTCCCTTGTATCCTCAAACTGATTTCATGAAGCAGAGCCCACATTGTGAAGCTTTCAATATATTTTTAATTGAATTATGTTCATGTTATTGTGCATTTGTCATTGTTACTAGTATTCTCATGATACATTTTATCGTTTCTAATAGCCTAAGGCATTCTTTTGTTTAGGTAGCAAGGAGGAGGCCTTTTTTGATTCCCAGGCCTGGTTGGAGTCAGATTGTGATGATGACTTCTTTAGTGTCAAGGGAGGTGAGACAGAACTTTGATACCTGATGCTCTTTCCATATTCTCCGTTCATCTTTCTTCTCATGTTATTATAGTCATAAAATTGAAAATGGCTATTATGCATTCAACTGAATCATTAGTAATGACTGCTAAGGCAATTTGAGAAGACCAGATCTAGAAAATCAGGTATTGGAAGTACCTGACCTTTTTGTTCAAGAAAAGTGCCACACCAGTGCGTAGTTTTTGCTAAAATAGGGATCTAAGTGTCAGGAACACTTTTTATTCTTGTTGTGAGTAGCCACCTTCAATTTACACTTGCAATCATTATCATTAATTCTTGTAGTCTATCTGTCTTCAATGCAGATTTTACACCATCACTTGGAAATACTCCTTCGTGTGGAAATACACCTGTGCATCGAGGTTTGTTGGTCGGTAATCTGCTAGGTAATCGAGCCTCTTTTGGAGAAAGAACTTCTGCTTCTATACCGCAATCTTCTCCAATACACAAGAGGAAGAATTTACTTGAG</genome_strand>
        <mrna_strand>GTAGCGCTCCCTTTTACTGCATTTTCTCCTACGACTTTCATCTAGGTTCTTAGAGGCATCTCGGTGGTACAAATCAAGTGTTTTCTGTTAGCAATGGGTTCATCTGCTTCAGGGCATAAAGATCCGAAATCAGCAATGAAGCTCCGTTATGTCTTTGCATCTAAATCTGACAAGCTTGTGAGTCCCTCACCTATCAAAGATAAACCCCTTGATACTGCTGAAATCAAACTCTCTCTTCCTCAAATCAAACCTCAGCGTTCCCCGGTGCTCCCGCTTAACAGTTTTAGCGACTATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAAGGAGGAGGCCTTTTTTGATTCCCAGGCCTGGTTGGAGTCAGATTGTGATGATGACTTCTTTAGTGTCAAGGGAG...................................................................................................................................................................................................................................................................................................................................................ATTTTACACCATCACTTGGAAATACTCCTTCGTGTGGAAATACACCTGTGCATCGAGGATTGTTGGTCGGTAATCTGCTAGGTAATCGAGCCTCTTTTGGAGAAAGAACTTCTGCTTCTATACCGCAATCTTCTCCAATACACAAGAGGAAGAATTTACTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E710998" ref_strand="+" ref_description="SGN-E710998 [FA57CF02]">
      <seq>ctttactgcattttctcctacgactttcatctaggttcttagaggcatctcggtggtacaaatcaagtgttttctgttagcaatgggttcatctgcttcagtgcataaagatccgaaatcagcaatgaagctccgttttgtctttgcatctaaatctgacaagcttgtgagtccctcacctatcaaagataaaccccttgatactgctgaaatcaaactctctcttcctcaaatcaaacctcagcgttccccggtgctcccgcttaacagttttagcgactatggtagcaaggaggaggccttttttgattcccaggcctggttggagtcagattgtgatgatgacttctttagtgtcaagggagattttacaccatcacttggaaatactccttcgtgtggaaatacacctgtgcatcgaggtttgttggtcggtaatctgctaggtaatcgagcctcttttggagaaagaacttctgcttctataccgcaatcttctccaatacacaagaggaagaatttacttgagcttttcaaagaaagctcaagaaaccggaacccgaatgagcatggtgctgaagacaacgaaaatatacaggcagctggtctacagctaccacctaaatccacatttagcacacctcatgtgccggtgtctagtggcaagagcacccctgtaggaaagtacaaaagtgaggcaaaatcgctgaggtcagtacaatgttgtcttcccaggttgagtggcagttttagggaaaagaggaagaaaatgagtcctgcaaatacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="+" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="104143" stop="107317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104442" g_stop="104725" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104726" i_stop="106175" i_length="1450">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106176" g_stop="106256" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="365" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106257" i_stop="106595" i_length="339">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106596" g_stop="107017" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="787" r_length="422" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="+" ref_id="SGN-E710998" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>787</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710998" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104442" e_stop="104725"/>
          <exon e_start="106176" e_stop="106256"/>
          <exon e_start="106596" e_stop="107017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTACTGCATTTTCTCCTACGACTTTCATCTAGGTTCTTAGAGGCATCTCGGTGGTACAAATCAAGTGTTTTCTGTTAGCAATGGGTTCATCTGCTTCAGTGCATAAAGATCCGAAATCAGCAATGAAGCTCCGTTTTGTCTTTGCATCTAAATCTGACAAGCTTGTGAGTCCCTCACCTATCAAAGATAAACCCCTTGATACTGCTGAAATCAAACTCTCTCTTCCTCAAATCAAACCTCAGCGTTCCCCGGTGCTCCCGCTTAACAGTTTTAGCGACTATGGTACCATCTTCTTCTTTTCAATTCCTGTCCGATTATTCAGTTTGTTTTTATGTTTATTTGACGTTGATTTCACTTTATGTTCGACGCTTTTGTGTGGGGTTTCTCGTGATGAGAAAAAAAAAGAGGAGGAAAATTGATGCTTTTCATGTGAAACACTTTTTTTTCAGTTTCAAATTTTGAGTTAGTCTGATGTTGGATTACTAGTTTCTTCTATTTGCTAAGGAAATTGGTTGTTCTACAGAAATTTTATCTAATGTTTAAGAAAATTGTAGAGATGTTCTGTTTATCTGAAAGGCATGATTAACAGGTTGATGGTCTTCCAACTAATAGTTCCTTTGTTGGATAATAACTATTTGTTGAATGAACTTTAACTCCATCACTAACACAATTCCTGTTCAAAATTGTCTTCTTATGAAACTTAGAAAATTACAATTTTAATGACTTAAGTGTGTTCTTCTTATTATTTTTTTGTTTGCTGTCTATTCCTTTGTGCCATTAGGTAAGATTGACTGACGAGCTACTGTTAAAATCATGTGCAATGCCAAAATTCTCTTATTGGTGGGGTCATTTGCAGCACATGTTGTGGCACTACGACCTTTCAAAAAAAAAGAAAGAAAGAAAGAAAGAGACACCCTGTAGCTTAATGTGAATAATTCAATAGAAGAGTCATTTTCAATATTCTTTATATTCAACCCAGATGTATTTGTCAATATAAAAATGGATGTATAATATAAGTGTAATCCATGTACATTTAGTGTAAAAAGTAAACAGTGAAATACAGGCTAAAGACACCGTTTTACAGGGAAAATGGCTTCCTTGTTTCATTTCATCATCTGTGCAAGCAGCTGTAACCTTAGTTGAGATTTGCACGTTTAATTCAGCGACTTTTCTTGTTTCATAATCCTTGTCAATTGTGTTACATGTAATTTTCCTCTTGTCATGTGGTTTTGTTACAACAGTCAGGGGATCCTTCATTGACTTCTTTCAAAGCAATCCGACGAATCATCTTGTTTTCTATGATATTTATGTGGTAATAGCACTCTCTAGTCAAAATAAGTTTCTTCTGTGTATTTTATGCCATTGACAAAATGTAGTGCAGTTTTTTACTGTAAAGACTTAACTAATGCCTACTAGTTTAGTTTTCTCAGAAGTGTCTAACTAGTTCTGTTTCTTGTTTATTTTTTTATATGGGTGAATTTGTTTTGAATGTGATGTGTTGGGATTGTGGTGGAATAATGGTGAAAACGACATGCTCTATGCTTTCTTTCAGTTTCTTCTTTCGTTTCCCTTGTATCCTCAAACTGATTTCATGAAGCAGAGCCCACATTGTGAAGCTTTCAATATATTTTTAATTGAATTATGTTCATGTTATTGTGCATTTGTCATTGTTACTAGTATTCTCATGATACATTTTATCGTTTCTAATAGCCTAAGGCATTCTTTTGTTTAGGTAGCAAGGAGGAGGCCTTTTTTGATTCCCAGGCCTGGTTGGAGTCAGATTGTGATGATGACTTCTTTAGTGTCAAGGGAGGTGAGACAGAACTTTGATACCTGATGCTCTTTCCATATTCTCCGTTCATCTTTCTTCTCATGTTATTATAGTCATAAAATTGAAAATGGCTATTATGCATTCAACTGAATCATTAGTAATGACTGCTAAGGCAATTTGAGAAGACCAGATCTAGAAAATCAGGTATTGGAAGTACCTGACCTTTTTGTTCAAGAAAAGTGCCACACCAGTGCGTAGTTTTTGCTAAAATAGGGATCTAAGTGTCAGGAACACTTTTTATTCTTGTTGTGAGTAGCCACCTTCAATTTACACTTGCAATCATTATCATTAATTCTTGTAGTCTATCTGTCTTCAATGCAGATTTTACACCATCACTTGGAAATACTCCTTCGTGTGGAAATACACCTGTGCATCGAGGTTTGTTGGTCGGTAATCTGCTAGGTAATCGAGCCTCTTTTGGAGAAAGAACTTCTGCTTCTATACCGCAATCTTCTCCAATACACAAGAGGAAGAATTTACTTGAGCTTTTCAAAGAAAGCTCAAGAAACCGGAACCCGAATGAGCATGGTGCTGAAGACAACGAAAATATACAGGCAGCTGGTCTACAGCTACCACCTAAATCCACATTTAGCACACCTCATGTGCCGGTGTCTAGTGGCAAGAGCACCCCTGTAGGAAAGTACAAAAGTGAGGCAAAATCGCTGAGGTCAGTACAATGTTGTCTTCCCAGGTTGAGTGGCAGTTTTAGGGAAAAGAGGAAGAGTATGAGTCCTGCAAATACC</genome_strand>
        <mrna_strand>CTTTACTGCATTTTCTCCTACGACTTTCATCTAGGTTCTTAGAGGCATCTCGGTGGTACAAATCAAGTGTTTTCTGTTAGCAATGGGTTCATCTGCTTCAGTGCATAAAGATCCGAAATCAGCAATGAAGCTCCGTTTTGTCTTTGCATCTAAATCTGACAAGCTTGTGAGTCCCTCACCTATCAAAGATAAACCCCTTGATACTGCTGAAATCAAACTCTCTCTTCCTCAAATCAAACCTCAGCGTTCCCCGGTGCTCCCGCTTAACAGTTTTAGCGACTATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAAGGAGGAGGCCTTTTTTGATTCCCAGGCCTGGTTGGAGTCAGATTGTGATGATGACTTCTTTAGTGTCAAGGGAG...................................................................................................................................................................................................................................................................................................................................................ATTTTACACCATCACTTGGAAATACTCCTTCGTGTGGAAATACACCTGTGCATCGAGGTTTGTTGGTCGGTAATCTGCTAGGTAATCGAGCCTCTTTTGGAGAAAGAACTTCTGCTTCTATACCGCAATCTTCTCCAATACACAAGAGGAAGAATTTACTTGAGCTTTTCAAAGAAAGCTCAAGAAACCGGAACCCGAATGAGCATGGTGCTGAAGACAACGAAAATATACAGGCAGCTGGTCTACAGCTACCACCTAAATCCACATTTAGCACACCTCATGTGCCGGTGTCTAGTGGCAAGAGCACCCCTGTAGGAAAGTACAAAAGTGAGGCAAAATCGCTGAGGTCAGTACAATGTTGTCTTCCCAGGTTGAGTGGCAGTTTTAGGGAAAAGAGGAAGAAAATGAGTCCTGCAAATACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E393766" ref_strand="+" ref_description="SGN-E393766 [TUS-14-A13](-)">
      <seq>ttttttagtgtcaagggagattttacaccatcactgggaaatattccttcgggtggaaatacacctgtgcattcgaggtttgttggtcggtaatttgctaggtaatcgagcctcttttggagaaagaacttctgcttctataccgcaatcttctccaatacacaagaggaagaatttacttgagcttttcaacgaaagctcaagaaaccggaacccgaatgagcatggtgctgaagacaacgaaaatatacaggcagctggtctacagctaccacctaaatccacatttagcacacctcatgtgccggtgtctagtggcaagagcacccctgtaggaaagtacaaaagtgaggcaaaatcgctgaggtcagtacaatgttgtcttcccaggttgagtggcagttttagggaaaagaggaagagtatgagtcctgcaaataccgtgggctaatagctagaactcggctttcataagttctctatgtatgtatatgctagtgcacaaggaattgtgcatctattgagctttgcactttgaccctcagtaacttgagggccgtgagatgaggtgtgcattggcacacacttactgtgtataaattaaacttataaagaacagctttgttaataaattaacaaggtcgtattctgttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="+" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="105938" stop="107530"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106238" g_stop="106256" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106257" i_stop="106595" i_length="339">
            <donor d_prob="0.958" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106596" g_stop="107238" g_length="643"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="663" r_length="644" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="+" ref_id="SGN-E393766" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106238" e_stop="106256"/>
          <exon e_start="106596" e_stop="107238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTAGTGTCAAGGGAGGTGAGACAGAACTTTGATACCTGATGCTCTTTCCATATTCTCCGTTCATCTTTCTTCTCATGTTATTATAGTCATAAAATTGAAAATGGCTATTATGCATTCAACTGAATCATTAGTAATGACTGCTAAGGCAATTTGAGAAGACCAGATCTAGAAAATCAGGTATTGGAAGTACCTGACCTTTTTGTTCAAGAAAAGTGCCACACCAGTGCGTAGTTTTTGCTAAAATAGGGATCTAAGTGTCAGGAACACTTTTTATTCTTGTTGTGAGTAGCCACCTTCAATTTACACTTGCAATCATTATCATTAATTCTTGTAGTCTATCTGTCTTCAATGCAGATTTTACACCATCACTTGGAAATACTCCTTCGTGTGGAAATACACCTGTGCA-TCGAGGTTTGTTGGTCGGTAATCTGCTAGGTAATCGAGCCTCTTTTGGAGAAAGAACTTCTGCTTCTATACCGCAATCTTCTCCAATACACAAGAGGAAGAATTTACTTGAGCTTTTCAAAGAAAGCTCAAGAAACCGGAACCCGAATGAGCATGGTGCTGAAGACAACGAAAATATACAGGCAGCTGGTCTACAGCTACCACCTAAATCCACATTTAGCACACCTCATGTGCCGGTGTCTAGTGGCAAGAGCACCCCTGTAGGAAAGTACAAAAGTGAGGCAAAATCGCTGAGGTCAGTACAATGTTGTCTTCCCAGGTTGAGTGGCAGTTTTAGGGAAAAGAGGAAGAGTATGAGTCCTGCAAATACCGTGGGCTAATAGCTAGAACTCGGCTTTCATAAGTTCTCTATGTATGTATATGCTAGTGCACAAGGAATTGTGCATCTATTGAGCTTTGCACTTTGACCCTCAGTAACTTGAGGGCCGTGAGATGAGGTGTGCATTGGCACACACTTACTGTGTATAAATTAAACTTATAAAGAACAGCTTTGTTAATAAATTAACAAGGTCGTATTCTGTTAATGTATATG</genome_strand>
        <mrna_strand>TTTTTTAGTGTCAAGGGAG...................................................................................................................................................................................................................................................................................................................................................ATTTTACACCATCACTGGGAAATATTCCTTCGGGTGGAAATACACCTGTGCATTCGAGGTTTGTTGGTCGGTAATTTGCTAGGTAATCGAGCCTCTTTTGGAGAAAGAACTTCTGCTTCTATACCGCAATCTTCTCCAATACACAAGAGGAAGAATTTACTTGAGCTTTTCAACGAAAGCTCAAGAAACCGGAACCCGAATGAGCATGGTGCTGAAGACAACGAAAATATACAGGCAGCTGGTCTACAGCTACCACCTAAATCCACATTTAGCACACCTCATGTGCCGGTGTCTAGTGGCAAGAGCACCCCTGTAGGAAAGTACAAAAGTGAGGCAAAATCGCTGAGGTCAGTACAATGTTGTCTTCCCAGGTTGAGTGGCAGTTTTAGGGAAAAGAGGAAGAGTATGAGTCCTGCAAATACCGTGGGCTAATAGCTAGAACTCGGCTTTCATAAGTTCTCTATGTATGTATATGCTAGTGCACAAGGAATTGTGCATCTATTGAGCTTTGCACTTTGACCCTCAGTAACTTGAGGGCCGTGAGATGAGGTGTGCATTGGCACACACTTACTGTGTATAAATTAAACTTATAAAGAACAGCTTTGTTAATAAATTAACAAGGTCGTATTCTGTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E712858" ref_strand="+" ref_description="SGN-E712858 [FB06AB01]">
      <seq>gcctcttttggagaaagaacttctgcttctataccgcaatcttctccaatacacaagaggaagaatttacttgagcttttcaaagaaagctcaagaaaccggaacccgaatgagcatggtgctgaagacaacgaaaatatacaggcagctggtctacagctaccacctaaatccacatttagcacacctcatgtgccggtgtctagtggcaagagcacccctgtaggaaagtacaaaagtgaggcaaaatcgctgaggtcagtacaatgttgtcttcccaggttgagtggcagttttagggaaaagaggaagagtatgagtcctgcaaataccgtgggctaatagctagaactcggctttcataagttctctatgtatgtatatgctagtgcacaaggaattgtgcatctattgagctttgcactttgaccctcagtaacttgagggccgtgagatgaggtgtgcattggcacacacttactgtgtataaattaaacttataaagaacagctttgttaataaattaacaaggtcgtattctgttaatgtatatgtttcttctgctttannaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="+" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="106385" stop="107551"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106685" g_stop="107256" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="572" r_length="572" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="573" polyA_stop="594"/>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="+" ref_id="SGN-E712858" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712858" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106685" e_stop="107256"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTCTTTTGGAGAAAGAACTTCTGCTTCTATACCGCAATCTTCTCCAATACACAAGAGGAAGAATTTACTTGAGCTTTTCAAAGAAAGCTCAAGAAACCGGAACCCGAATGAGCATGGTGCTGAAGACAACGAAAATATACAGGCAGCTGGTCTACAGCTACCACCTAAATCCACATTTAGCACACCTCATGTGCCGGTGTCTAGTGGCAAGAGCACCCCTGTAGGAAAGTACAAAAGTGAGGCAAAATCGCTGAGGTCAGTACAATGTTGTCTTCCCAGGTTGAGTGGCAGTTTTAGGGAAAAGAGGAAGAGTATGAGTCCTGCAAATACCGTGGGCTAATAGCTAGAACTCGGCTTTCATAAGTTCTCTATGTATGTATATGCTAGTGCACAAGGAATTGTGCATCTATTGAGCTTTGCACTTTGACCCTCAGTAACTTGAGGGCCGTGAGATGAGGTGTGCATTGGCACACACTTACTGTGTATAAATTAAACTTATAAAGAACAGCTTTGTTAATAAATTAACAAGGTCGTATTCTGTTAATGTATATGTTTCTTCTGCTTTCCTCA</genome_strand>
        <mrna_strand>GCCTCTTTTGGAGAAAGAACTTCTGCTTCTATACCGCAATCTTCTCCAATACACAAGAGGAAGAATTTACTTGAGCTTTTCAAAGAAAGCTCAAGAAACCGGAACCCGAATGAGCATGGTGCTGAAGACAACGAAAATATACAGGCAGCTGGTCTACAGCTACCACCTAAATCCACATTTAGCACACCTCATGTGCCGGTGTCTAGTGGCAAGAGCACCCCTGTAGGAAAGTACAAAAGTGAGGCAAAATCGCTGAGGTCAGTACAATGTTGTCTTCCCAGGTTGAGTGGCAGTTTTAGGGAAAAGAGGAAGAGTATGAGTCCTGCAAATACCGTGGGCTAATAGCTAGAACTCGGCTTTCATAAGTTCTCTATGTATGTATATGCTAGTGCACAAGGAATTGTGCATCTATTGAGCTTTGCACTTTGACCCTCAGTAACTTGAGGGCCGTGAGATGAGGTGTGCATTGGCACACACTTACTGTGTATAAATTAAACTTATAAAGAACAGCTTTGTTAATAAATTAACAAGGTCGTATTCTGTTAATGTATATGTTTCTTCTGCTTTANNAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>150</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="27064" PGL_stop="22200"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27064" e_stop="26931"/>
            <exon e_start="26658" e_stop="26584"/>
            <exon e_start="25914" e_stop="25694"/>
            <exon e_start="24661" e_stop="24382"/>
            <exon e_start="24273" e_stop="24202"/>
            <exon e_start="23073" e_stop="22957"/>
            <exon e_start="22843" e_stop="22778"/>
            <exon e_start="22690" e_stop="22200"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.858" acc_prob="0.831" e_score="1.000"/>
          <exon-intron don_prob="0.887" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.922" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.571" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.380" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="27064" e_stop="26931" e_length="134"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.998">
            <gDNA_intron_boundary i_start="26930" i_stop="26659" i_length="272"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26658" e_stop="26584" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.858" acc_prob="0.831">
            <gDNA_intron_boundary i_start="26583" i_stop="25915" i_length="669"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="25914" e_stop="25694" e_length="221"/>
          </exon>
          <intron i_serial="3" don_prob="0.887" acc_prob="0.988">
            <gDNA_intron_boundary i_start="25693" i_stop="24662" i_length="1032"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="24661" e_stop="24382" e_length="280"/>
          </exon>
          <intron i_serial="4" don_prob="0.970" acc_prob="0.922">
            <gDNA_intron_boundary i_start="24381" i_stop="24274" i_length="108"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="24273" e_stop="24202" e_length="72"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.571">
            <gDNA_intron_boundary i_start="24201" i_stop="23074" i_length="1128"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="23073" e_stop="22957" e_length="117"/>
          </exon>
          <intron i_serial="6" don_prob="0.986" acc_prob="0.998">
            <gDNA_intron_boundary i_start="22956" i_stop="22844" i_length="113"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="22843" e_stop="22778" e_length="66"/>
          </exon>
          <intron i_serial="7" don_prob="0.380" acc_prob="0.998">
            <gDNA_intron_boundary i_start="22777" i_stop="22691" i_length="87"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="22690" e_stop="22200" e_length="491"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27064" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24382"/>
              <exon start="24273" stop="24202"/>
              <exon start="23073" stop="22957"/>
              <exon start="22843" stop="22778"/>
              <exon start="22690" stop="22219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745946" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27052" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27049" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27049" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27048" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265838" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27047" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27044" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27041" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27017" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24382"/>
              <exon start="24273" stop="24202"/>
              <exon start="23073" stop="22957"/>
              <exon start="22843" stop="22807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27017" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24382"/>
              <exon start="24273" stop="24202"/>
              <exon start="23073" stop="23027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27016" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24382"/>
              <exon start="24273" stop="24225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264203" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27016" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27016" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27016" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27015" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245241" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27015" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249919" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27015" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245189" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27013" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24382"/>
              <exon start="24273" stop="24225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248627" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27013" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24580"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247056" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27008" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267524" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27005" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208083" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27002" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24382"/>
              <exon start="24273" stop="24202"/>
              <exon start="23073" stop="22957"/>
              <exon start="22843" stop="22805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27001" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269661" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27001" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24484"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313170" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26999" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24382"/>
              <exon start="24273" stop="24202"/>
              <exon start="23073" stop="22957"/>
              <exon start="22843" stop="22803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26998" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24382"/>
              <exon start="24273" stop="24202"/>
              <exon start="23073" stop="23003"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321313" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26998" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24382"/>
              <exon start="24273" stop="24269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26998" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26998" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26998" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307360" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26998" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310602" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26998" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26998" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26998" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306085" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26998" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282469" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26994" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294999" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26993" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268691" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26992" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26989" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26989" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26987" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374680" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26985" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299747" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26981" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26976" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24382"/>
              <exon start="24273" stop="24202"/>
              <exon start="23073" stop="22978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706280" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26975" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24382"/>
              <exon start="24273" stop="24225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26975" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24382"/>
              <exon start="24273" stop="24232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326896" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26955" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26644" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24382"/>
              <exon start="24273" stop="24202"/>
              <exon start="23073" stop="23003"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26636" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24611"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244824" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24382"/>
              <exon start="24273" stop="24202"/>
              <exon start="23073" stop="23044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25897" stop="25736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202796" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25892" stop="25694"/>
              <exon start="24661" stop="24552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325150" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25888" stop="25694"/>
              <exon start="24661" stop="24382"/>
              <exon start="24273" stop="24202"/>
              <exon start="23073" stop="22957"/>
              <exon start="22843" stop="22778"/>
              <exon start="22690" stop="22636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260712" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25869" stop="25694"/>
              <exon start="24661" stop="24557"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325057" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25845" stop="25694"/>
              <exon start="24661" stop="24559"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325143" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25718" stop="25694"/>
              <exon start="24661" stop="24382"/>
              <exon start="24273" stop="24202"/>
              <exon start="23073" stop="22957"/>
              <exon start="22843" stop="22778"/>
              <exon start="22690" stop="22490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25718" stop="25694"/>
              <exon start="24661" stop="24382"/>
              <exon start="24273" stop="24202"/>
              <exon start="23073" stop="22984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24543" stop="24382"/>
              <exon start="24273" stop="24202"/>
              <exon start="23073" stop="22957"/>
              <exon start="22843" stop="22778"/>
              <exon start="22690" stop="22426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24543" stop="24382"/>
              <exon start="24273" stop="24202"/>
              <exon start="23073" stop="22957"/>
              <exon start="22843" stop="22778"/>
              <exon start="22690" stop="22625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24492" stop="24382"/>
              <exon start="24273" stop="24202"/>
              <exon start="23073" stop="22957"/>
              <exon start="22843" stop="22778"/>
              <exon start="22690" stop="22581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24435" stop="24382"/>
              <exon start="24273" stop="24202"/>
              <exon start="23073" stop="22957"/>
              <exon start="22843" stop="22778"/>
              <exon start="22690" stop="22511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24385" stop="24382"/>
              <exon start="24273" stop="24202"/>
              <exon start="23073" stop="22957"/>
              <exon start="22843" stop="22778"/>
              <exon start="22690" stop="22437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24243" stop="24202"/>
              <exon start="23073" stop="22957"/>
              <exon start="22843" stop="22778"/>
              <exon start="22690" stop="22374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308825" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24242" stop="24202"/>
              <exon start="23073" stop="22957"/>
              <exon start="22843" stop="22778"/>
              <exon start="22690" stop="22275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731994" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23073" stop="22957"/>
              <exon start="22843" stop="22778"/>
              <exon start="22690" stop="22275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23022" stop="22957"/>
              <exon start="22843" stop="22778"/>
              <exon start="22690" stop="22275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202238" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23016" stop="22957"/>
              <exon start="22843" stop="22778"/>
              <exon start="22690" stop="22275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374681" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23014" stop="22957"/>
              <exon start="22843" stop="22778"/>
              <exon start="22690" stop="22275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23012" stop="22957"/>
              <exon start="22843" stop="22778"/>
              <exon start="22690" stop="22275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212280" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23010" stop="22957"/>
              <exon start="22843" stop="22778"/>
              <exon start="22690" stop="22255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267257" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22799" stop="22778"/>
              <exon start="22690" stop="22359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22799" stop="22778"/>
              <exon start="22690" stop="22359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22799" stop="22778"/>
              <exon start="22690" stop="22359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357052" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22681" stop="22200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717315" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGCTCGTCCTGGAGCAAAACCTCCTCCTCTTAGAATTTTCTGAATAGTTTTGAAGACTAGACTGGTTTTCCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCG : AGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACG : GCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTC : GATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACCCGTCCTGGTAAACTGAGTGATCGTTTTCCTCAGCCATATCCAAATGAAGCAGCTGCTAGATTTGCTAATGGGGGAGCCTACCCTCCAGATTTAAGTCTTATTACAAAA : GCACGCCATAATGGTCAAAACTATGTGTTTGCTCTTCTTACTGGCTATCGTGATCCTCCTGCTGGTGTTTCG : ATTCGTGAAGGACTGCACTACAATCCTTACTTCCCTGGTGGAGCTATTGCAATGCCAAAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTGTCCCTGCAACAGAAGCTCAG : ATGGGGAAAGATGTGGTGTCATTTTTAACTTGGGCTGCTGAACCAGAAATGGAAGAGAGAAAACTG : ATGGGCTTCAAGTGGATATTTGTACTGTCCCTTGCACTGCTTCAAGCTGCTTACTACAGGCGTTTGAGGTGGTCTGTTCTCAAGTCACGTAAGCTGGTCCTTGATGTTGTCAATTAGAACATCCCCTATTCAAATGCTTGTGGAGCAGGCAAATAATATTATCTTTCTCAAAATGTTTTTGTTGTTTGGCGTCTTACTCTTGAATGGCCTGGTTTTTGGTAAAGCAAACAGGCTAAAATTTTCTTATATTTGGAGTTCAAATAAGAAGAGGCCCGTGTAATTTTCAAGTTGTGATTTTTATAGTGGGGAGACATTCTCGCCTTGTTTTTGAAGCTGTAATCCCTGTTTGTGAGCTGTCTGTCTGACTGTTGTGAAACTTTGCTCTCCAGATTTATAGTTTTGTGACTTGACATACAATTTTATTGCACGTAAAAAGAACCTATTCCAAGGGTTACCAAAACGATTAATCAAATAAGAATATTTAGTAGTAA</gDNA_template>
            <first_frame> Q  L  V  L  E  Q  N  L  L  L  L  E  F  S  E  *  F  *  R  L  D  W  F  S  G  S  L  R  R  C  L  S  Y  R  R  R  S  T  L  S  T  V  L  F  R :   G  R  D  *  Q  C  W  E  V  E  Q  S  I  A  Y  *  A  G  N  F  N  L  N  P  R :   H  L  Q  F  Y  H  P  L  F  P  K  K  L  K  K  N  L  V  L  L  A  *  S  P  S  E  H  *  H  S  L  E  R  V  Y  L  D  F  *  V  L  R  Q  *  H  L  L  M  R  L  N  T  D  W  N  A  Q  A  I  L  G  L  M  Q  A  F  L  V  H  T  I  M  L   : R  F  V  V  V  T  R  F  I  N  K  Y  V  H  L  V  I  Q  C  H  L  F  H  I  V  T  W  S  G  W  H  I  Q  R  K  K  *  R  L  W  Q  L  R  L  R  W  R  M  G  L  M  M  R  V  K  C  L  P  V  L  V  N  *  V  I  V  F  L  S  H  I  Q  M  K  Q  L  L  D  L  L  M  G  E  P  T  L  Q  I  *  V  L  L  Q  K :   H  A  I  M  V  K  T  M  C  L  L  F  L  L  A  I  V  I  L  L  L  V  F  R :   F  V  K  D  C  T  T  I  L  T  S  L  V  E  L  L  Q  C  Q  K  C  L  M  M  V  L  L  S  M  K  M  V  S  L  Q  Q  K  L  R :   W  G  K  M  W  C  H  F  *  L  G  L  L  N  Q  K  W  K  R  E  N  * :   W  A  S  S  G  Y  L  Y  C  P  L  H  C  F  K  L  L  T  T  G  V  *  G  G  L  F  S  S  H  V  S  W  S  L  M  L  S  I  R  T  S  P  I  Q  M  L  V  E  Q  A  N  N  I  I  F  L  K  M  F  L  L  F  G  V  L  L  L  N  G  L  V  F  G  K  A  N  R  L  K  F  S  Y  I  W  S  S  N  K  K  R  P  V  *  F  S  S  C  D  F  Y  S  G  E  T  F  S  P  C  F  *  S  C  N  P  C  L  *  A  V  C  L  T  V  V  K  L  C  S  P  D  L  *  F  C  D  L  T  Y  N  F  I  A  R  K  K  N  L  F  Q  G  L  P  K  R  L  I  K  *  E  Y  L  V  V  </first_frame>
            <second_frame>  S  S  S  W  S  K  T  S  S  S  *  N  F  L  N  S  F  E  D  *  T  G  F  P  D  L  S  G  A  V  C  P  I  A  V  D  Q  P  S  L  R  S  F  S   : E  G  V  T  N  N  V  G  R  *  S  S  P  S  L  T  R  Q  E  I  S  I  *  I  H   : G  I  S  N  F  I  I  L  C  F  Q  K  S  S  R  R  I  W  F  F  W  H  E  V  L  Q  N  I  S  T  H  W  S  G  C  I  W  T  S  R  F  C  D  S  S  I  C  *  *  G  *  T  R  I  G  M  P  K  L  S  L  A  S  C  R  H  S  *  F  I  R  S  C  F  :  D  S  S  W  S  P  G  L  S  T  S  M  C  I  L  S  F  N  V  T  C  F  I  S  *  L  G  R  G  G  I  Y  R  G  R  S  K  G  Y  G  S  *  D  *  G  G  G  W  A  *  *  *  G  *  N  V  Y  P  S  W  *  T  E  *  S  F  S  S  A  I  S  K  *  S  S  C  *  I  C  *  W  G  S  L  P  S  R  F  K  S  Y  Y  K   : S  T  P  *  W  S  K  L  C  V  C  S  S  Y  W  L  S  *  S  S  C  W  C  F   : D  S  *  R  T  A  L  Q  S  L  L  P  W  W  S  Y  C  N  A  K  N  A  *  *  W  C  C  *  V  *  R  W  C  P  C  N  R  S  S   : D  G  E  R  C  G  V  I  F  N  L  G  C  *  T  R  N  G  R  E  K  T   : D  G  L  Q  V  D  I  C  T  V  P  C  T  A  S  S  C  L  L  Q  A  F  E  V  V  C  S  Q  V  T  *  A  G  P  *  C  C  Q  L  E  H  P  L  F  K  C  L  W  S  R  Q  I  I  L  S  F  S  K  C  F  C  C  L  A  S  Y  S  *  M  A  W  F  L  V  K  Q  T  G  *  N  F  L  I  F  G  V  Q  I  R  R  G  P  C  N  F  Q  V  V  I  F  I  V  G  R  H  S  R  L  V  F  E  A  V  I  P  V  C  E  L  S  V  *  L  L  *  N  F  A  L  Q  I  Y  S  F  V  T  *  H  T  I  L  L  H  V  K  R  T  Y  S  K  G  Y  Q  N  D  *  S  N  K  N  I  *  *  * </second_frame>
            <third_frame>   A  R  P  G  A  K  P  P  P  L  R  I  F  *  I  V  L  K  T  R  L  V  F  R  I  S  Q  A  L  F  V  L  S  P  S  I  N  P  L  Y  G  P  F  P  :  R  A  *  L  T  M  L  G  G  R  A  V  H  R  L  L  G  R  K  F  Q  S  E  S  T  :  A  S  P  I  L  S  S  F  V  S  K  K  A  Q  E  E  F  G  S  F  G  M  K  S  F  R  T  L  A  L  I  G  A  G  V  S  G  L  L  G  F  A  T  V  A  S  A  D  E  A  E  H  G  L  E  C  P  S  Y  P  W  P  H  A  G  I  L  S  S  Y  D  H  A  S :   I  R  R  G  H  Q  V  Y  Q  Q  V  C  A  S  C  H  S  M  S  L  V  S  Y  R  D  L  V  G  V  A  Y  T  E  E  E  V  K  A  M  A  A  E  I  E  V  A  D  G  P  N  D  E  G  E  M  F  T  R  P  G  K  L  S  D  R  F  P  Q  P  Y  P  N  E  A  A  A  R  F  A  N  G  G  A  Y  P  P  D  L  S  L  I  T  K  :  A  R  H  N  G  Q  N  Y  V  F  A  L  L  T  G  Y  R  D  P  P  A  G  V  S  :  I  R  E  G  L  H  Y  N  P  Y  F  P  G  G  A  I  A  M  P  K  M  L  N  D  G  A  V  E  Y  E  D  G  V  P  A  T  E  A  Q  :  M  G  K  D  V  V  S  F  L  T  W  A  A  E  P  E  M  E  E  R  K  L  :  M  G  F  K  W  I  F  V  L  S  L  A  L  L  Q  A  A  Y  Y  R  R  L  R  W  S  V  L  K  S  R  K  L  V  L  D  V  V  N  *  N  I  P  Y  S  N  A  C  G  A  G  K  *  Y  Y  L  S  Q  N  V  F  V  V  W  R  L  T  L  E  W  P  G  F  W  *  S  K  Q  A  K  I  F  L  Y  L  E  F  K  *  E  E  A  R  V  I  F  K  L  *  F  L  *  W  G  D  I  L  A  L  F  L  K  L  *  S  L  F  V  S  C  L  S  D  C  C  E  T  L  L  S  R  F  I  V  L  *  L  D  I  Q  F  Y  C  T  *  K  E  P  I  P  R  V  T  K  T  I  N  Q  I  R  I  F  S  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0042D07.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26649" stop="26584"/>
                    <exon start="25914" stop="25694"/>
                    <exon start="24661" stop="24382"/>
                    <exon start="24273" stop="24202"/>
                    <exon start="23073" stop="22957"/>
                    <exon start="22843" stop="22778"/>
                    <exon start="22690" stop="22574"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>936</number_coding_nucleotides>
                  <number_encoded_amino_acids>312</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTMLGGRAVHRLLGRKFQSESTASPILSSFVSKKAQEEFGSFGMKSFRTLALIGAGVSGLLGFATVASADEAEHGLECPSYPWPHAGILSSYDHASIRRGHQVYQQVCASCHSMSLVSYRDLVGVAYTEEEVKAMAAEIEVADGPNDEGEMFTRPGKLSDRFPQPYPNEAAARFANGGAYPPDLSLITKARHNGQNYVFALLTGYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDGVPATEAQMGKDVVSFLTWAAEPEMEERKLMGFKWIFVLSLALLQAAYYRRLRWSVLKSRKLVLDVVN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="27052" e_stop="26931"/>
            <exon e_start="26658" e_stop="26584"/>
            <exon e_start="25914" e_stop="25694"/>
            <exon e_start="24661" e_stop="24382"/>
            <exon e_start="24273" e_stop="24202"/>
            <exon e_start="23073" e_stop="22957"/>
            <exon e_start="22843" e_stop="22200"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.858" acc_prob="0.831" e_score="1.000"/>
          <exon-intron don_prob="0.887" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.922" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.571" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="27052" e_stop="26931" e_length="122"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.998">
            <gDNA_intron_boundary i_start="26930" i_stop="26659" i_length="272"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26658" e_stop="26584" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.858" acc_prob="0.831">
            <gDNA_intron_boundary i_start="26583" i_stop="25915" i_length="669"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="25914" e_stop="25694" e_length="221"/>
          </exon>
          <intron i_serial="3" don_prob="0.887" acc_prob="0.988">
            <gDNA_intron_boundary i_start="25693" i_stop="24662" i_length="1032"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="24661" e_stop="24382" e_length="280"/>
          </exon>
          <intron i_serial="4" don_prob="0.970" acc_prob="0.922">
            <gDNA_intron_boundary i_start="24381" i_stop="24274" i_length="108"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="24273" e_stop="24202" e_length="72"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.571">
            <gDNA_intron_boundary i_start="24201" i_stop="23074" i_length="1128"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="23073" e_stop="22957" e_length="117"/>
          </exon>
          <intron i_serial="6" don_prob="0.986" acc_prob="0.998">
            <gDNA_intron_boundary i_start="22956" i_stop="22844" i_length="113"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="22843" e_stop="22200" e_length="644"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27052" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27049" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27049" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27048" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265838" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27047" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27044" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27041" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27017" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24382"/>
              <exon start="24273" stop="24202"/>
              <exon start="23073" stop="22957"/>
              <exon start="22843" stop="22807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27017" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24382"/>
              <exon start="24273" stop="24202"/>
              <exon start="23073" stop="23027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27016" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24382"/>
              <exon start="24273" stop="24225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264203" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27016" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27016" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27016" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27015" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245241" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27015" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249919" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27015" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245189" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27013" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24382"/>
              <exon start="24273" stop="24225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248627" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27013" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24580"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247056" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27008" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267524" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27005" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208083" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27002" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24382"/>
              <exon start="24273" stop="24202"/>
              <exon start="23073" stop="22957"/>
              <exon start="22843" stop="22805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27001" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269661" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27001" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24484"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313170" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26999" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24382"/>
              <exon start="24273" stop="24202"/>
              <exon start="23073" stop="22957"/>
              <exon start="22843" stop="22803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26998" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24382"/>
              <exon start="24273" stop="24202"/>
              <exon start="23073" stop="23003"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321313" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26998" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24382"/>
              <exon start="24273" stop="24269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26998" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26998" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26998" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307360" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26998" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310602" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26998" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26998" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26998" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306085" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26998" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282469" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26994" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294999" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26993" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268691" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26992" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26989" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26989" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26987" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374680" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26985" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299747" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26981" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26976" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24382"/>
              <exon start="24273" stop="24202"/>
              <exon start="23073" stop="22978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706280" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26975" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24382"/>
              <exon start="24273" stop="24225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26975" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24382"/>
              <exon start="24273" stop="24232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326896" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26955" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26644" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24382"/>
              <exon start="24273" stop="24202"/>
              <exon start="23073" stop="23003"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26636" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24611"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244824" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24382"/>
              <exon start="24273" stop="24202"/>
              <exon start="23073" stop="23044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25897" stop="25736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202796" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25892" stop="25694"/>
              <exon start="24661" stop="24552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325150" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25869" stop="25694"/>
              <exon start="24661" stop="24557"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325057" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25845" stop="25694"/>
              <exon start="24661" stop="24559"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325143" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25718" stop="25694"/>
              <exon start="24661" stop="24382"/>
              <exon start="24273" stop="24202"/>
              <exon start="23073" stop="22984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23054" stop="22957"/>
              <exon start="22843" stop="22364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339623" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22681" stop="22200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717315" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGCAAAACCTCCTCCTCTTAGAATTTTCTGAATAGTTTTGAAGACTAGACTGGTTTTCCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCG : AGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACG : GCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTC : GATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACCCGTCCTGGTAAACTGAGTGATCGTTTTCCTCAGCCATATCCAAATGAAGCAGCTGCTAGATTTGCTAATGGGGGAGCCTACCCTCCAGATTTAAGTCTTATTACAAAA : GCACGCCATAATGGTCAAAACTATGTGTTTGCTCTTCTTACTGGCTATCGTGATCCTCCTGCTGGTGTTTCG : ATTCGTGAAGGACTGCACTACAATCCTTACTTCCCTGGTGGAGCTATTGCAATGCCAAAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTGTCCCTGCAACAGAAGCTCAG : ATGGGGAAAGATGTGGTGTCATTTTTAACTTGGGCTGCTGAACCAGAAATGGAAGAGAGAAAACTGGTCTGTTGTTTTTGGTATTTGCACAGATGATGATGTTTGTGTTATTACTATATGGTAGTTTGTGATGTATTTGCATTTCCACTGCAGATGGGCTTCAAGTGGATATTTGTACTGTCCCTTGCACTGCTTCAAGCTGCTTACTACAGGCGTTTGAGGTGGTCTGTTCTCAAGTCACGTAAGCTGGTCCTTGATGTTGTCAATTAGAACATCCCCTATTCAAATGCTTGTGGAGCAGGCAAATAATATTATCTTTCTCAAAATGTTTTTGTTGTTTGGCGTCTTACTCTTGAATGGCCTGGTTTTTGGTAAAGCAAACAGGCTAAAATTTTCTTATATTTGGAGTTCAAATAAGAAGAGGCCCGTGTAATTTTCAAGTTGTGATTTTTATAGTGGGGAGACATTCTCGCCTTGTTTTTGAAGCTGTAATCCCTGTTTGTGAGCTGTCTGTCTGACTGTTGTGAAACTTTGCTCTCCAGATTTATAGTTTTGTGACTTGACATACAATTTTATTGCACGTAAAAAGAACCTATTCCAAGGGTTACCAAAACGATTAATCAAATAAGAATATTTAGTAGTAA</gDNA_template>
            <first_frame> E  Q  N  L  L  L  L  E  F  S  E  *  F  *  R  L  D  W  F  S  G  S  L  R  R  C  L  S  Y  R  R  R  S  T  L  S  T  V  L  F  R :   G  R  D  *  Q  C  W  E  V  E  Q  S  I  A  Y  *  A  G  N  F  N  L  N  P  R :   H  L  Q  F  Y  H  P  L  F  P  K  K  L  K  K  N  L  V  L  L  A  *  S  P  S  E  H  *  H  S  L  E  R  V  Y  L  D  F  *  V  L  R  Q  *  H  L  L  M  R  L  N  T  D  W  N  A  Q  A  I  L  G  L  M  Q  A  F  L  V  H  T  I  M  L   : R  F  V  V  V  T  R  F  I  N  K  Y  V  H  L  V  I  Q  C  H  L  F  H  I  V  T  W  S  G  W  H  I  Q  R  K  K  *  R  L  W  Q  L  R  L  R  W  R  M  G  L  M  M  R  V  K  C  L  P  V  L  V  N  *  V  I  V  F  L  S  H  I  Q  M  K  Q  L  L  D  L  L  M  G  E  P  T  L  Q  I  *  V  L  L  Q  K :   H  A  I  M  V  K  T  M  C  L  L  F  L  L  A  I  V  I  L  L  L  V  F  R :   F  V  K  D  C  T  T  I  L  T  S  L  V  E  L  L  Q  C  Q  K  C  L  M  M  V  L  L  S  M  K  M  V  S  L  Q  Q  K  L  R :   W  G  K  M  W  C  H  F  *  L  G  L  L  N  Q  K  W  K  R  E  N  W  S  V  V  F  G  I  C  T  D  D  D  V  C  V  I  T  I  W  *  F  V  M  Y  L  H  F  H  C  R  W  A  S  S  G  Y  L  Y  C  P  L  H  C  F  K  L  L  T  T  G  V  *  G  G  L  F  S  S  H  V  S  W  S  L  M  L  S  I  R  T  S  P  I  Q  M  L  V  E  Q  A  N  N  I  I  F  L  K  M  F  L  L  F  G  V  L  L  L  N  G  L  V  F  G  K  A  N  R  L  K  F  S  Y  I  W  S  S  N  K  K  R  P  V  *  F  S  S  C  D  F  Y  S  G  E  T  F  S  P  C  F  *  S  C  N  P  C  L  *  A  V  C  L  T  V  V  K  L  C  S  P  D  L  *  F  C  D  L  T  Y  N  F  I  A  R  K  K  N  L  F  Q  G  L  P  K  R  L  I  K  *  E  Y  L  V  V  </first_frame>
            <second_frame>  S  K  T  S  S  S  *  N  F  L  N  S  F  E  D  *  T  G  F  P  D  L  S  G  A  V  C  P  I  A  V  D  Q  P  S  L  R  S  F  S   : E  G  V  T  N  N  V  G  R  *  S  S  P  S  L  T  R  Q  E  I  S  I  *  I  H   : G  I  S  N  F  I  I  L  C  F  Q  K  S  S  R  R  I  W  F  F  W  H  E  V  L  Q  N  I  S  T  H  W  S  G  C  I  W  T  S  R  F  C  D  S  S  I  C  *  *  G  *  T  R  I  G  M  P  K  L  S  L  A  S  C  R  H  S  *  F  I  R  S  C  F  :  D  S  S  W  S  P  G  L  S  T  S  M  C  I  L  S  F  N  V  T  C  F  I  S  *  L  G  R  G  G  I  Y  R  G  R  S  K  G  Y  G  S  *  D  *  G  G  G  W  A  *  *  *  G  *  N  V  Y  P  S  W  *  T  E  *  S  F  S  S  A  I  S  K  *  S  S  C  *  I  C  *  W  G  S  L  P  S  R  F  K  S  Y  Y  K   : S  T  P  *  W  S  K  L  C  V  C  S  S  Y  W  L  S  *  S  S  C  W  C  F   : D  S  *  R  T  A  L  Q  S  L  L  P  W  W  S  Y  C  N  A  K  N  A  *  *  W  C  C  *  V  *  R  W  C  P  C  N  R  S  S   : D  G  E  R  C  G  V  I  F  N  L  G  C  *  T  R  N  G  R  E  K  T  G  L  L  F  L  V  F  A  Q  M  M  M  F  V  L  L  L  Y  G  S  L  *  C  I  C  I  S  T  A  D  G  L  Q  V  D  I  C  T  V  P  C  T  A  S  S  C  L  L  Q  A  F  E  V  V  C  S  Q  V  T  *  A  G  P  *  C  C  Q  L  E  H  P  L  F  K  C  L  W  S  R  Q  I  I  L  S  F  S  K  C  F  C  C  L  A  S  Y  S  *  M  A  W  F  L  V  K  Q  T  G  *  N  F  L  I  F  G  V  Q  I  R  R  G  P  C  N  F  Q  V  V  I  F  I  V  G  R  H  S  R  L  V  F  E  A  V  I  P  V  C  E  L  S  V  *  L  L  *  N  F  A  L  Q  I  Y  S  F  V  T  *  H  T  I  L  L  H  V  K  R  T  Y  S  K  G  Y  Q  N  D  *  S  N  K  N  I  *  *  * </second_frame>
            <third_frame>   A  K  P  P  P  L  R  I  F  *  I  V  L  K  T  R  L  V  F  R  I  S  Q  A  L  F  V  L  S  P  S  I  N  P  L  Y  G  P  F  P  :  R  A  *  L  T  M  L  G  G  R  A  V  H  R  L  L  G  R  K  F  Q  S  E  S  T  :  A  S  P  I  L  S  S  F  V  S  K  K  A  Q  E  E  F  G  S  F  G  M  K  S  F  R  T  L  A  L  I  G  A  G  V  S  G  L  L  G  F  A  T  V  A  S  A  D  E  A  E  H  G  L  E  C  P  S  Y  P  W  P  H  A  G  I  L  S  S  Y  D  H  A  S :   I  R  R  G  H  Q  V  Y  Q  Q  V  C  A  S  C  H  S  M  S  L  V  S  Y  R  D  L  V  G  V  A  Y  T  E  E  E  V  K  A  M  A  A  E  I  E  V  A  D  G  P  N  D  E  G  E  M  F  T  R  P  G  K  L  S  D  R  F  P  Q  P  Y  P  N  E  A  A  A  R  F  A  N  G  G  A  Y  P  P  D  L  S  L  I  T  K  :  A  R  H  N  G  Q  N  Y  V  F  A  L  L  T  G  Y  R  D  P  P  A  G  V  S  :  I  R  E  G  L  H  Y  N  P  Y  F  P  G  G  A  I  A  M  P  K  M  L  N  D  G  A  V  E  Y  E  D  G  V  P  A  T  E  A  Q  :  M  G  K  D  V  V  S  F  L  T  W  A  A  E  P  E  M  E  E  R  K  L  V  C  C  F  W  Y  L  H  R  *  *  C  L  C  Y  Y  Y  M  V  V  C  D  V  F  A  F  P  L  Q  M  G  F  K  W  I  F  V  L  S  L  A  L  L  Q  A  A  Y  Y  R  R  L  R  W  S  V  L  K  S  R  K  L  V  L  D  V  V  N  *  N  I  P  Y  S  N  A  C  G  A  G  K  *  Y  Y  L  S  Q  N  V  F  V  V  W  R  L  T  L  E  W  P  G  F  W  *  S  K  Q  A  K  I  F  L  Y  L  E  F  K  *  E  E  A  R  V  I  F  K  L  *  F  L  *  W  G  D  I  L  A  L  F  L  K  L  *  S  L  F  V  S  C  L  S  D  C  C  E  T  L  L  S  R  F  I  V  L  *  L  D  I  Q  F  Y  C  T  *  K  E  P  I  P  R  V  T  K  T  I  N  Q  I  R  I  F  S  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0042D07.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26649" stop="26584"/>
                    <exon start="25914" stop="25694"/>
                    <exon start="24661" stop="24382"/>
                    <exon start="24273" stop="24202"/>
                    <exon start="23073" stop="22957"/>
                    <exon start="22843" stop="22748"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>849</number_coding_nucleotides>
                  <number_encoded_amino_acids>283</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTMLGGRAVHRLLGRKFQSESTASPILSSFVSKKAQEEFGSFGMKSFRTLALIGAGVSGLLGFATVASADEAEHGLECPSYPWPHAGILSSYDHASIRRGHQVYQQVCASCHSMSLVSYRDLVGVAYTEEEVKAMAAEIEVADGPNDEGEMFTRPGKLSDRFPQPYPNEAAARFANGGAYPPDLSLITKARHNGQNYVFALLTGYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDGVPATEAQMGKDVVSFLTWAAEPEMEERKLVCCFWYLHR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0042D07.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22623" stop="22411"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGLFSSHVSWSLMLSIRTSPIQMLVEQANNIIFLKMFLLFGVLLLNGLVFGKANRLKFSYIWSSNKKRPV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="23078" e_stop="22957"/>
            <exon e_start="22843" e_stop="22778"/>
            <exon e_start="22690" e_stop="22200"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.380" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="23078" e_stop="22957" e_length="122"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.998">
            <gDNA_intron_boundary i_start="22956" i_stop="22844" i_length="113"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="22843" e_stop="22778" e_length="66"/>
          </exon>
          <intron i_serial="2" don_prob="0.380" acc_prob="0.998">
            <gDNA_intron_boundary i_start="22777" i_stop="22691" i_length="87"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="22690" e_stop="22200" e_length="491"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23078" stop="22957"/>
              <exon start="22843" stop="22778"/>
              <exon start="22690" stop="22268"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23073" stop="22957"/>
              <exon start="22843" stop="22778"/>
              <exon start="22690" stop="22275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23022" stop="22957"/>
              <exon start="22843" stop="22778"/>
              <exon start="22690" stop="22275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202238" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23016" stop="22957"/>
              <exon start="22843" stop="22778"/>
              <exon start="22690" stop="22275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374681" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23014" stop="22957"/>
              <exon start="22843" stop="22778"/>
              <exon start="22690" stop="22275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23012" stop="22957"/>
              <exon start="22843" stop="22778"/>
              <exon start="22690" stop="22275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212280" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23010" stop="22957"/>
              <exon start="22843" stop="22778"/>
              <exon start="22690" stop="22255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267257" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22799" stop="22778"/>
              <exon start="22690" stop="22359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22799" stop="22778"/>
              <exon start="22690" stop="22359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22799" stop="22778"/>
              <exon start="22690" stop="22359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357052" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22681" stop="22200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717315" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATAGATTCGTGAAGGACTGCACTACAATCCTTACTTCCCTGGTGGAGCTATTGCAATGCCAAAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTGTCCCTGCAACAGAAGCTCAG : ATGGGGAAAGATGTGGTGTCATTTTTAACTTGGGCTGCTGAACCAGAAATGGAAGAGAGAAAACTG : ATGGGCTTCAAGTGGATATTTGTACTGTCCCTTGCACTGCTTCAAGCTGCTTACTACAGGCGTTTGAGGTGGTCTGTTCTCAAGTCACGTAAGCTGGTCCTTGATGTTGTCAATTAGAACATCCCCTATTCAAATGCTTGTGGAGCAGGCAAATAATATTATCTTTCTCAAAATGTTTTTGTTGTTTGGCGTCTTACTCTTGAATGGCCTGGTTTTTGGTAAAGCAAACAGGCTAAAATTTTCTTATATTTGGAGTTCAAATAAGAAGAGGCCCGTGTAATTTTCAAGTTGTGATTTTTATAGTGGGGAGACATTCTCGCCTTGTTTTTGAAGCTGTAATCCCTGTTTGTGAGCTGTCTGTCTGACTGTTGTGAAACTTTGCTCTCCAGATTTATAGTTTTGTGACTTGACATACAATTTTATTGCACGTAAAAAGAACCTATTCCAAGGGTTACCAAAACGATTAATCAAATAAGAATATTTAGTAGTAA</gDNA_template>
            <first_frame> Y  R  F  V  K  D  C  T  T  I  L  T  S  L  V  E  L  L  Q  C  Q  K  C  L  M  M  V  L  L  S  M  K  M  V  S  L  Q  Q  K  L  R :   W  G  K  M  W  C  H  F  *  L  G  L  L  N  Q  K  W  K  R  E  N  * :   W  A  S  S  G  Y  L  Y  C  P  L  H  C  F  K  L  L  T  T  G  V  *  G  G  L  F  S  S  H  V  S  W  S  L  M  L  S  I  R  T  S  P  I  Q  M  L  V  E  Q  A  N  N  I  I  F  L  K  M  F  L  L  F  G  V  L  L  L  N  G  L  V  F  G  K  A  N  R  L  K  F  S  Y  I  W  S  S  N  K  K  R  P  V  *  F  S  S  C  D  F  Y  S  G  E  T  F  S  P  C  F  *  S  C  N  P  C  L  *  A  V  C  L  T  V  V  K  L  C  S  P  D  L  *  F  C  D  L  T  Y  N  F  I  A  R  K  K  N  L  F  Q  G  L  P  K  R  L  I  K  *  E  Y  L  V  V  </first_frame>
            <second_frame>  I  D  S  *  R  T  A  L  Q  S  L  L  P  W  W  S  Y  C  N  A  K  N  A  *  *  W  C  C  *  V  *  R  W  C  P  C  N  R  S  S   : D  G  E  R  C  G  V  I  F  N  L  G  C  *  T  R  N  G  R  E  K  T   : D  G  L  Q  V  D  I  C  T  V  P  C  T  A  S  S  C  L  L  Q  A  F  E  V  V  C  S  Q  V  T  *  A  G  P  *  C  C  Q  L  E  H  P  L  F  K  C  L  W  S  R  Q  I  I  L  S  F  S  K  C  F  C  C  L  A  S  Y  S  *  M  A  W  F  L  V  K  Q  T  G  *  N  F  L  I  F  G  V  Q  I  R  R  G  P  C  N  F  Q  V  V  I  F  I  V  G  R  H  S  R  L  V  F  E  A  V  I  P  V  C  E  L  S  V  *  L  L  *  N  F  A  L  Q  I  Y  S  F  V  T  *  H  T  I  L  L  H  V  K  R  T  Y  S  K  G  Y  Q  N  D  *  S  N  K  N  I  *  *  * </second_frame>
            <third_frame>   *  I  R  E  G  L  H  Y  N  P  Y  F  P  G  G  A  I  A  M  P  K  M  L  N  D  G  A  V  E  Y  E  D  G  V  P  A  T  E  A  Q  :  M  G  K  D  V  V  S  F  L  T  W  A  A  E  P  E  M  E  E  R  K  L  :  M  G  F  K  W  I  F  V  L  S  L  A  L  L  Q  A  A  Y  Y  R  R  L  R  W  S  V  L  K  S  R  K  L  V  L  D  V  V  N  *  N  I  P  Y  S  N  A  C  G  A  G  K  *  Y  Y  L  S  Q  N  V  F  V  V  W  R  L  T  L  E  W  P  G  F  W  *  S  K  Q  A  K  I  F  L  Y  L  E  F  K  *  E  E  A  R  V  I  F  K  L  *  F  L  *  W  G  D  I  L  A  L  F  L  K  L  *  S  L  F  V  S  C  L  S  D  C  C  E  T  L  L  S  R  F  I  V  L  *  L  D  I  Q  F  Y  C  T  *  K  E  P  I  P  R  V  T  K  T  I  N  Q  I  R  I  F  S  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0042D07.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23073" stop="22957"/>
                    <exon start="22843" stop="22778"/>
                    <exon start="22690" stop="22574"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>297</number_coding_nucleotides>
                  <number_encoded_amino_acids>99</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IREGLHYNPYFPGGAIAMPKMLNDGAVEYEDGVPATEAQMGKDVVSFLTWAAEPEMEERKLMGFKWIFVLSLALLQAAYYRRLRWSVLKSRKLVLDVVN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0042D07.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22623" stop="22411"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGLFSSHVSWSLMLSIRTSPIQMLVEQANNIIFLKMFLLFGVLLLNGLVFGKANRLKFSYIWSSNKKRPV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="27784" PGL_stop="29099"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27784" e_stop="28238"/>
            <exon e_start="28317" e_stop="28546"/>
            <exon e_start="28985" e_stop="29099"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.014" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.976" e_score="0.996"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="27784" e_stop="28238" e_length="455"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.014">
            <gDNA_intron_boundary i_start="28239" i_stop="28316" i_length="78"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="28317" e_stop="28546" e_length="230"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.976">
            <gDNA_intron_boundary i_start="28547" i_stop="28984" i_length="438"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="28985" e_stop="29099" e_length="115"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27784" stop="28238"/>
              <exon start="28317" stop="28546"/>
              <exon start="28985" stop="29041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28399" stop="28546"/>
              <exon start="28985" stop="29099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297241" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTATTACAACATAATGATAAGATCAACAGCAAAGCACAGTTTCGCAAAACCCATCATTCTTCTTCTTGCATTTGTTGCTCTTCTAGCAATTTCCTTGACCCGCGATTTTCATTCCGCTTCTTCTTCTGCTTATGTTTCCCTTGCTACCACTTGGGCTCCTGACAAGTACCGTATTAATGTCTCCAATCAGGTAAGTTAAGAGCATTTGGGTTGCTTCAACTAATTACTACGAAATTATGATCTATTTTGCATTTTGTAGAATCAGGATGTAGGAGGAGGAAGTAATAAGGATCGTTACCCTGAGAGAGCGTTATCCATGACCTATGCTGATTTGCCTGCTCCTGAATTGAAATGGGAACAGATGGCATCTGCACCTGTGGTTCGTTTGGATGGCTATTCTCTTCAGATTAAGGATTTGCTTTTCGTTTTTGCAGGATATGAAAACCTAGACCAT : GTGCATTCTCATGTTGATGTTTACAATTTTACATCAAATACATGGACGGAGAGTTTTGCAATACCTAAAGATATGGCAAATTCACATTTAGGGGTGGCTACTGATGGAAGATACATATATATAGTGTCAGGACAATATGGTCCCCAATGCAGGGGACCTACAGCGAAAACATTTGTTTTGGACACACACACCAGAAAATGGGAAAGCTTGCCACCATTACCAGCACCAAG : GTATGCACCAGCAACTCAGCTTTGGAAAGGCAGGCTACATGTGATGGGTGGAGGCAAAGAGAATCGCCACACCCCTGGATTAGATCATTGGAGTCTTGCAGTAGCTAATGGAAAA</gDNA_template>
            <first_frame> I  I  T  T  *  *  *  D  Q  Q  Q  S  T  V  S  Q  N  P  S  F  F  F  L  H  L  L  L  F  *  Q  F  P  *  P  A  I  F  I  P  L  L  L  L  L  M  F  P  L  L  P  L  G  L  L  T  S  T  V  L  M  S  P  I  R  *  V  K  S  I  W  V  A  S  T  N  Y  Y  E  I  M  I  Y  F  A  F  C  R  I  R  M  *  E  E  E  V  I  R  I  V  T  L  R  E  R  Y  P  *  P  M  L  I  C  L  L  L  N  *  N  G  N  R  W  H  L  H  L  W  F  V  W  M  A  I  L  F  R  L  R  I  C  F  S  F  L  Q  D  M  K  T  *  T  M :   C  I  L  M  L  M  F  T  I  L  H  Q  I  H  G  R  R  V  L  Q  Y  L  K  I  W  Q  I  H  I  *  G  W  L  L  M  E  D  T  Y  I  *  C  Q  D  N  M  V  P  N  A  G  D  L  Q  R  K  H  L  F  W  T  H  T  P  E  N  G  K  A  C  H  H  Y  Q  H  Q   : G  M  H  Q  Q  L  S  F  G  K  A  G  Y  M  *  W  V  E  A  K  R  I  A  T  P  L  D  *  I  I  G  V  L  Q  *  L  M  E   </first_frame>
            <second_frame>  L  L  Q  H  N  D  K  I  N  S  K  A  Q  F  R  K  T  H  H  S  S  S  C  I  C  C  S  S  S  N  F  L  D  P  R  F  S  F  R  F  F  F  C  L  C  F  P  C  Y  H  L  G  S  *  Q  V  P  Y  *  C  L  Q  S  G  K  L  R  A  F  G  L  L  Q  L  I  T  T  K  L  *  S  I  L  H  F  V  E  S  G  C  R  R  R  K  *  *  G  S  L  P  *  E  S  V  I  H  D  L  C  *  F  A  C  S  *  I  E  M  G  T  D  G  I  C  T  C  G  S  F  G  W  L  F  S  S  D  *  G  F  A  F  R  F  C  R  I  *  K  P  R  P   : C  A  F  S  C  *  C  L  Q  F  Y  I  K  Y  M  D  G  E  F  C  N  T  *  R  Y  G  K  F  T  F  R  G  G  Y  *  W  K  I  H  I  Y  S  V  R  T  I  W  S  P  M  Q  G  T  Y  S  E  N  I  C  F  G  H  T  H  Q  K  M  G  K  L  A  T  I  T  S  T  K  :  V  C  T  S  N  S  A  L  E  R  Q  A  T  C  D  G  W  R  Q  R  E  S  P  H  P  W  I  R  S  L  E  S  C  S  S  *  W  K  </second_frame>
            <third_frame>   Y  Y  N  I  M  I  R  S  T  A  K  H  S  F  A  K  P  I  I  L  L  L  A  F  V  A  L  L  A  I  S  L  T  R  D  F  H  S  A  S  S  S  A  Y  V  S  L  A  T  T  W  A  P  D  K  Y  R  I  N  V  S  N  Q  V  S  *  E  H  L  G  C  F  N  *  L  L  R  N  Y  D  L  F  C  I  L  *  N  Q  D  V  G  G  G  S  N  K  D  R  Y  P  E  R  A  L  S  M  T  Y  A  D  L  P  A  P  E  L  K  W  E  Q  M  A  S  A  P  V  V  R  L  D  G  Y  S  L  Q  I  K  D  L  L  F  V  F  A  G  Y  E  N  L  D  H  :  V  H  S  H  V  D  V  Y  N  F  T  S  N  T  W  T  E  S  F  A  I  P  K  D  M  A  N  S  H  L  G  V  A  T  D  G  R  Y  I  Y  I  V  S  G  Q  Y  G  P  Q  C  R  G  P  T  A  K  T  F  V  L  D  T  H  T  R  K  W  E  S  L  P  P  L  P  A  P  R :   Y  A  P  A  T  Q  L  W  K  G  R  L  H  V  M  G  G  G  K  E  N  R  H  T  P  G  L  D  H  W  S  L  A  V  A  N  G  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0042D07.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28044" stop="28238"/>
                    <exon start="28317" stop="28546"/>
                    <exon start="28985" stop="29099"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>540</number_coding_nucleotides>
                  <number_encoded_amino_acids>180</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NQDVGGGSNKDRYPERALSMTYADLPAPELKWEQMASAPVVRLDGYSLQIKDLLFVFAGYENLDHVHSHVDVYNFTSNTWTESFAIPKDMANSHLGVATDGRYIYIVSGQYGPQCRGPTAKTFVLDTHTRKWESLPPLPAPRYAPATQLWKGRLHVMGGGKENRHTPGLDHWSLAVANGK</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0042D07.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27786" stop="27983"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YYNIMIRSTAKHSFAKPIILLLAFVALLAISLTRDFHSASSSAYVSLATTWAPDKYRINVSNQVS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="29705" PGL_stop="30762"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29705" e_stop="29891"/>
            <exon e_start="30110" e_stop="30518"/>
            <exon e_start="30707" e_stop="30762"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.831" acc_prob="0.000" e_score="0.976"/>
          <exon-only e_score="0.571"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="29705" e_stop="29891" e_length="187"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.996">
            <gDNA_intron_boundary i_start="29892" i_stop="30109" i_length="218"/>
          </intron>
          <exon e_serial="2" e_score="0.976">
            <gDNA_exon_boundary e_start="30110" e_stop="30518" e_length="409"/>
          </exon>
          <intron i_serial="2" don_prob="0.831" acc_prob="0.000">
            <gDNA_intron_boundary i_start="30519" i_stop="30706" i_length="188"/>
          </intron>
          <exon e_serial="3" e_score="0.571">
            <gDNA_exon_boundary e_start="30707" e_stop="30762" e_length="56"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29705" stop="29891"/>
              <exon start="30110" stop="30207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244129" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29841" stop="29891"/>
              <exon start="30110" stop="30518"/>
              <exon start="30707" stop="30762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244128" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATGCTAGATGAAAGTATGAAATGGAAACAGTTGCCTTCTATGCCAAAACCAGTTTCGCACATAGAATGTTCTTGGGTTATTGTAAATAATTCTATTGTTATTGTTGGAGGCACAACAGAGAAGCATCCCGTGACCAAAAGGATGATTTTAGTTGGAGAGGTGTTCCAGTTCAACCTAAATACACTG : ACATGGTCTGCCATTGGAAAGATGCCATATCGGGCAAAGACAACACAGGCGGGATTCTGGGATGGATGGTTGTATTTCACCTCTGGACAGCGGGATAGAGGACCAGATAATCCACAGCCCAGGAAAGTAGTAGGAGATACATGGAGAACTAAGTTAAGATTACTATGAATGCTACCATGTCGCTTTTCCAATGTTATTGAATGTCAAGTTAATTTGGCGTTTGCAAAGAAAAATGTTGCTCATACATTAGTACTCTTCATTTTTTAAAATGTATTATTTAGGCAGTTGTATTAGCACATTTGGCGACCTGTCCCCATCTGACTTTCCTTAAAAGCTTGTCAAGATGGGTCTAGAGATCCAGTGGAAGGAAAAGACGATAAACAAATACTCGTATAGGGAAGCTTCATCA : GAGATCTCTAACCATTCGAGGAACTTGCTACTACAAAACAAATTAACTAAAACACC</gDNA_template>
            <first_frame> Y  A  R  *  K  Y  E  M  E  T  V  A  F  Y  A  K  T  S  F  A  H  R  M  F  L  G  Y  C  K  *  F  Y  C  Y  C  W  R  H  N  R  E  A  S  R  D  Q  K  D  D  F  S  W  R  G  V  P  V  Q  P  K  Y  T   : D  M  V  C  H  W  K  D  A  I  S  G  K  D  N  T  G  G  I  L  G  W  M  V  V  F  H  L  W  T  A  G  *  R  T  R  *  S  T  A  Q  E  S  S  R  R  Y  M  E  N  *  V  K  I  T  M  N  A  T  M  S  L  F  Q  C  Y  *  M  S  S  *  F  G  V  C  K  E  K  C  C  S  Y  I  S  T  L  H  F  L  K  C  I  I  *  A  V  V  L  A  H  L  A  T  C  P  H  L  T  F  L  K  S  L  S  R  W  V  *  R  S  S  G  R  K  R  R  *  T  N  T  R  I  G  K  L  H  Q :   R  S  L  T  I  R  G  T  C  Y  Y  K  T  N  *  L  K  H  </first_frame>
            <second_frame>  M  L  D  E  S  M  K  W  K  Q  L  P  S  M  P  K  P  V  S  H  I  E  C  S  W  V  I  V  N  N  S  I  V  I  V  G  G  T  T  E  K  H  P  V  T  K  R  M  I  L  V  G  E  V  F  Q  F  N  L  N  T  L  :  T  W  S  A  I  G  K  M  P  Y  R  A  K  T  T  Q  A  G  F  W  D  G  W  L  Y  F  T  S  G  Q  R  D  R  G  P  D  N  P  Q  P  R  K  V  V  G  D  T  W  R  T  K  L  R  L  L  *  M  L  P  C  R  F  S  N  V  I  E  C  Q  V  N  L  A  F  A  K  K  N  V  A  H  T  L  V  L  F  I  F  *  N  V  L  F  R  Q  L  Y  *  H  I  W  R  P  V  P  I  *  L  S  L  K  A  C  Q  D  G  S  R  D  P  V  E  G  K  D  D  K  Q  I  L  V  *  G  S  F  I   : R  D  L  *  P  F  E  E  L  A  T  T  K  Q  I  N  *  N  T </second_frame>
            <third_frame>   C  *  M  K  V  *  N  G  N  S  C  L  L  C  Q  N  Q  F  R  T  *  N  V  L  G  L  L  *  I  I  L  L  L  L  L  E  A  Q  Q  R  S  I  P  *  P  K  G  *  F  *  L  E  R  C  S  S  S  T  *  I  H  * :   H  G  L  P  L  E  R  C  H  I  G  Q  R  Q  H  R  R  D  S  G  M  D  G  C  I  S  P  L  D  S  G  I  E  D  Q  I  I  H  S  P  G  K  *  *  E  I  H  G  E  L  S  *  D  Y  Y  E  C  Y  H  V  A  F  P  M  L  L  N  V  K  L  I  W  R  L  Q  R  K  M  L  L  I  H  *  Y  S  S  F  F  K  M  Y  Y  L  G  S  C  I  S  T  F  G  D  L  S  P  S  D  F  P  *  K  L  V  K  M  G  L  E  I  Q  W  K  E  K  T  I  N  K  Y  S  Y  R  E  A  S  S  :  E  I  S  N  H  S  R  N  L  L  L  Q  N  K  L  T  K  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0042D07.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29706" stop="29891"/>
                    <exon start="30110" stop="30277"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>351</number_coding_nucleotides>
                  <number_encoded_amino_acids>117</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MLDESMKWKQLPSMPKPVSHIECSWVIVNNSIVIVGGTTEKHPVTKRMILVGEVFQFNLNTLTWSAIGKMPYRAKTTQAGFWDGWLYFTSGQRDRGPDNPQPRKVVGDTWRTKLRLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="35620" PGL_stop="30631"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35620" e_stop="35369"/>
            <exon e_start="34870" e_stop="34755"/>
            <exon e_start="34662" e_stop="34416"/>
            <exon e_start="33906" e_stop="33849"/>
            <exon e_start="33721" e_stop="33632"/>
            <exon e_start="33240" e_stop="33175"/>
            <exon e_start="32642" e_stop="32553"/>
            <exon e_start="32404" e_stop="32246"/>
            <exon e_start="32165" e_stop="32044"/>
            <exon e_start="31286" e_stop="31214"/>
            <exon e_start="31125" e_stop="30631"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.587" acc_prob="0.805" e_score="1.000"/>
          <exon-intron don_prob="0.771" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.683" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.831" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.937"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="35620" e_stop="35369" e_length="252"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="35368" i_stop="34871" i_length="498"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="34870" e_stop="34755" e_length="116"/>
          </exon>
          <intron i_serial="2" don_prob="0.587" acc_prob="0.805">
            <gDNA_intron_boundary i_start="34754" i_stop="34663" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="34662" e_stop="34416" e_length="247"/>
          </exon>
          <intron i_serial="3" don_prob="0.771" acc_prob="0.999">
            <gDNA_intron_boundary i_start="34415" i_stop="33907" i_length="509"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="33906" e_stop="33849" e_length="58"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.999">
            <gDNA_intron_boundary i_start="33848" i_stop="33722" i_length="127"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="33721" e_stop="33632" e_length="90"/>
          </exon>
          <intron i_serial="5" don_prob="0.977" acc_prob="0.683">
            <gDNA_intron_boundary i_start="33631" i_stop="33241" i_length="391"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="33240" e_stop="33175" e_length="66"/>
          </exon>
          <intron i_serial="6" don_prob="0.976" acc_prob="0.976">
            <gDNA_intron_boundary i_start="33174" i_stop="32643" i_length="532"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="32642" e_stop="32553" e_length="90"/>
          </exon>
          <intron i_serial="7" don_prob="0.831" acc_prob="0.961">
            <gDNA_intron_boundary i_start="32552" i_stop="32405" i_length="148"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="32404" e_stop="32246" e_length="159"/>
          </exon>
          <intron i_serial="8" don_prob="0.900" acc_prob="1.000">
            <gDNA_intron_boundary i_start="32245" i_stop="32166" i_length="80"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="32165" e_stop="32044" e_length="122"/>
          </exon>
          <intron i_serial="9" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="32043" i_stop="31287" i_length="757"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="31286" e_stop="31214" e_length="73"/>
          </exon>
          <intron i_serial="10" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="31213" i_stop="31126" i_length="88"/>
          </intron>
          <exon e_serial="11" e_score="0.937">
            <gDNA_exon_boundary e_start="31125" e_stop="30631" e_length="495"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35620" stop="35369"/>
              <exon start="34870" stop="34755"/>
              <exon start="34662" stop="34449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35620" stop="35369"/>
              <exon start="34870" stop="34755"/>
              <exon start="34662" stop="34612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315615" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35619" stop="35369"/>
              <exon start="34870" stop="34755"/>
              <exon start="34662" stop="34416"/>
              <exon start="33906" stop="33849"/>
              <exon start="33721" stop="33632"/>
              <exon start="33240" stop="33191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35599" stop="35369"/>
              <exon start="34870" stop="34755"/>
              <exon start="34662" stop="34416"/>
              <exon start="33906" stop="33849"/>
              <exon start="33721" stop="33699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35599" stop="35369"/>
              <exon start="34870" stop="34755"/>
              <exon start="34662" stop="34450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212136" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35591" stop="35369"/>
              <exon start="34870" stop="34755"/>
              <exon start="34662" stop="34428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273079" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35582" stop="35369"/>
              <exon start="34870" stop="34755"/>
              <exon start="34662" stop="34416"/>
              <exon start="33906" stop="33849"/>
              <exon start="33721" stop="33632"/>
              <exon start="33240" stop="33178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35582" stop="35369"/>
              <exon start="34870" stop="34755"/>
              <exon start="34662" stop="34416"/>
              <exon start="33906" stop="33849"/>
              <exon start="33721" stop="33674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35542" stop="35369"/>
              <exon start="34870" stop="34755"/>
              <exon start="34662" stop="34416"/>
              <exon start="33906" stop="33849"/>
              <exon start="33721" stop="33632"/>
              <exon start="33240" stop="33175"/>
              <exon start="32642" stop="32580"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704358" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34628" stop="34416"/>
              <exon start="33906" stop="33849"/>
              <exon start="33721" stop="33632"/>
              <exon start="33240" stop="33175"/>
              <exon start="32642" stop="32585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34470" stop="34416"/>
              <exon start="33906" stop="33849"/>
              <exon start="33721" stop="33632"/>
              <exon start="33240" stop="33175"/>
              <exon start="32642" stop="32553"/>
              <exon start="32404" stop="32246"/>
              <exon start="32165" stop="32051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33211" stop="33175"/>
              <exon start="32642" stop="32553"/>
              <exon start="32404" stop="32246"/>
              <exon start="32165" stop="32044"/>
              <exon start="31286" stop="31214"/>
              <exon start="31125" stop="30931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376690" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33211" stop="33175"/>
              <exon start="32642" stop="32553"/>
              <exon start="32404" stop="32246"/>
              <exon start="32165" stop="32044"/>
              <exon start="31286" stop="31214"/>
              <exon start="31125" stop="30997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33211" stop="33175"/>
              <exon start="32642" stop="32553"/>
              <exon start="32404" stop="32246"/>
              <exon start="32165" stop="32044"/>
              <exon start="31286" stop="31214"/>
              <exon start="31125" stop="31111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33211" stop="33175"/>
              <exon start="32642" stop="32553"/>
              <exon start="32404" stop="32246"/>
              <exon start="32165" stop="32044"/>
              <exon start="31286" stop="31224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233784" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33196" stop="33175"/>
              <exon start="32642" stop="32553"/>
              <exon start="32404" stop="32246"/>
              <exon start="32165" stop="32044"/>
              <exon start="31286" stop="31214"/>
              <exon start="31125" stop="30998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251731" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32639" stop="32553"/>
              <exon start="32404" stop="32320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32637" stop="32553"/>
              <exon start="32404" stop="32246"/>
              <exon start="32165" stop="32044"/>
              <exon start="31286" stop="31214"/>
              <exon start="31125" stop="31013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32637" stop="32553"/>
              <exon start="32404" stop="32256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32566" stop="32553"/>
              <exon start="32404" stop="32246"/>
              <exon start="32165" stop="32044"/>
              <exon start="31286" stop="31214"/>
              <exon start="31125" stop="30914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266727" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32379" stop="32246"/>
              <exon start="32165" stop="32044"/>
              <exon start="31286" stop="31214"/>
              <exon start="31125" stop="31006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32320" stop="32246"/>
              <exon start="32165" stop="32044"/>
              <exon start="31286" stop="31214"/>
              <exon start="31125" stop="30919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266596" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32077" stop="32044"/>
              <exon start="31286" stop="31214"/>
              <exon start="31125" stop="30631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376689" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCTCTTAGACGTGAATCTGCTGAAACTCATAAGTGTGTTGATTGGGCGAGAGAGATGAATCTGAACATGAATTCAATGGAATCAGTGGTTGCTCAAATCCAAGGGCTATCGAGCAATTCATCAGACATAACTCAGCTTCACAACTTTCTCAAACAATCGGAAGAGCTACTCCATTCCGACTTCTCTCGCTTGCTTTCTTCTCTCGCTGAACTCGATCCTTCTATTCACTCCCTAGGTTTTCTCTATATTCT : GGAGGCATGCATCTCATTCCCAGTTGCAAAGGAGCATGTTAGTGAACTGCTTGTTTCTGTCGCTAGATTTATCAATTCATGTTCTACAGAGCAAATCCAGTTGGCGCCCAATAAGT : TCATTTCTGTTTGTAAAAAGTTCAAGGATCATGTTTTCGGACTGGAAACTCCGATTCGTGGTGTGGCTCCAATGCTGACTGCTATTCGTAAACTGCAATCCTCCCCTGAGCAATTAACAACATTGCATGCCGATTTTCTTCTTCTTTGTCTATTAGCAAAGTGCTACAAAACTGGCTTCTCTGTGCTGGAGGATGACATATATGAGATTGATCAGCCACGGGAGTTTTTTCTCTATTGTTACTACGG : GGGAATGGTTTGCATTGGACAAAAGCAGTTCCGCAAAGCATTGGAACTCTTGCACAAT : GTTGTGACTGCACCTATGTCTACTCTAAATGCAATAGCAGTTGAAGCTTACAAAAAGTACATTCTGGTTTCACTGATTCATCTTGGGCAG : TTCTCTACCAGTTTTCCCAAGTACACTTCTTCCGTGGCTCAAAGGAACTTGAAGAATTTCTCTCAG : CCCTACCTGGAGTTATCAAACAGTTATGGGACTGGAAGAATCTCTGAACTTGAAACATTTGTTCAAACAAACAAGGAGAAGTTTGAAAGC : GATAATAATCTTGGATTAGTGATGCAAGTAGTGTCTTCTATGTATAAGCGCAATATTCAGCGGTTAACTCAAACGTACCTAACTCTCTCCCTCCAAGATATTGCTAACACTGTCCAGCTAAGAGACCCCAAACAGGCAGAAATGCATGTGCTTCAGATG : ATTGAAGATGGTGAGATATATGCAACAATCAATCAGAAGGATGGTATGGTTAGATTTCTGGAGGATCCTGAGCAGTATAAAACGTGTGGAATGATTGAACATATCGATTCATCAATTAAGAG : ATTGATGGCAGTGTCGAAAAAGTTGACGTCTATGGATGAACTTATGTCATGTGATCCTATGTACCTAGGAAAG : GTTGGTAGGGAGAGACAGAGATTTGATTTTGATGATTTTGACGGTGTTCCTCAGAAATTCACTATCTGAGACTAGCAAAGTTCAGTTTTCTGAGTAAATATGGCAAATGATGCTGATATGTTCATTTGAAATATAAGCAAACTTTATTCCATTGACCTCAAGAAATGGCTAAGGAAATAGGTGTATTTAACTCCTGGTTCAATCAGTGGTATCATGTTTGTTTTATTTGCCCTTCTGCTTTTCGTTTTGTGTGGGCAGGTTGAACTGCTTGCTCTAGTTTTATTTTACTATCTAGCAAGGGAACTGTTTAGTTGTAGTTAGAGGCTAGGAGGATGATAATGTTCATCTTCTTTAGTGGACATTGGTGTTTTAGTTAATTTGTTTTGTAGTAGCAAGTTCCTCGAATGGTTAGAGATCTCCCAGTTTTTAGTTATTACAAAAATGGATACCCTTCTTTGTACTTACTTATAATAGTAAAATAAGATGCTTTGCATG</gDNA_template>
            <first_frame> V  S  *  T  *  I  C  *  N  S  *  V  C  *  L  G  E  R  D  E  S  E  H  E  F  N  G  I  S  G  C  S  N  P  R  A  I  E  Q  F  I  R  H  N  S  A  S  Q  L  S  Q  T  I  G  R  A  T  P  F  R  L  L  S  L  A  F  F  S  R  *  T  R  S  F  Y  S  L  P  R  F  S  L  Y  S  :  G  G  M  H  L  I  P  S  C  K  G  A  C  *  *  T  A  C  F  C  R  *  I  Y  Q  F  M  F  Y  R  A  N  P  V  G  A  Q  *  V :   H  F  C  L  *  K  V  Q  G  S  C  F  R  T  G  N  S  D  S  W  C  G  S  N  A  D  C  Y  S  *  T  A  I  L  P  *  A  I  N  N  I  A  C  R  F  S  S  S  L  S  I  S  K  V  L  Q  N  W  L  L  C  A  G  G  *  H  I  *  D  *  S  A  T  G  V  F  S  L  L  L  L  R  :  G  N  G  L  H  W  T  K  A  V  P  Q  S  I  G  T  L  A  Q   : C  C  D  C  T  Y  V  Y  S  K  C  N  S  S  *  S  L  Q  K  V  H  S  G  F  T  D  S  S  W  A   : V  L  Y  Q  F  S  Q  V  H  F  F  R  G  S  K  E  L  E  E  F  L  S   : A  L  P  G  V  I  K  Q  L  W  D  W  K  N  L  *  T  *  N  I  C  S  N  K  Q  G  E  V  *  K   : R  *  *  S  W  I  S  D  A  S  S  V  F  Y  V  *  A  Q  Y  S  A  V  N  S  N  V  P  N  S  L  P  P  R  Y  C  *  H  C  P  A  K  R  P  Q  T  G  R  N  A  C  A  S  D   : D  *  R  W  *  D  I  C  N  N  Q  S  E  G  W  Y  G  *  I  S  G  G  S  *  A  V  *  N  V  W  N  D  *  T  Y  R  F  I  N  *  E  :  I  D  G  S  V  E  K  V  D  V  Y  G  *  T  Y  V  M  *  S  Y  V  P  R  K   : G  W  *  G  E  T  E  I  *  F  *  *  F  *  R  C  S  S  E  I  H  Y  L  R  L  A  K  F  S  F  L  S  K  Y  G  K  *  C  *  Y  V  H  L  K  Y  K  Q  T  L  F  H  *  P  Q  E  M  A  K  E  I  G  V  F  N  S  W  F  N  Q  W  Y  H  V  C  F  I  C  P  S  A  F  R  F  V  W  A  G  *  T  A  C  S  S  F  I  L  L  S  S  K  G  T  V  *  L  *  L  E  A  R  R  M  I  M  F  I  F  F  S  G  H  W  C  F  S  *  F  V  L  *  *  Q  V  P  R  M  V  R  D  L  P  V  F  S  Y  Y  K  N  G  Y  P  S  L  Y  L  L  I  I  V  K  *  D  A  L  H  </first_frame>
            <second_frame>  S  L  R  R  E  S  A  E  T  H  K  C  V  D  W  A  R  E  M  N  L  N  M  N  S  M  E  S  V  V  A  Q  I  Q  G  L  S  S  N  S  S  D  I  T  Q  L  H  N  F  L  K  Q  S  E  E  L  L  H  S  D  F  S  R  L  L  S  S  L  A  E  L  D  P  S  I  H  S  L  G  F  L  Y  I  L :   E  A  C  I  S  F  P  V  A  K  E  H  V  S  E  L  L  V  S  V  A  R  F  I  N  S  C  S  T  E  Q  I  Q  L  A  P  N  K   : F  I  S  V  C  K  K  F  K  D  H  V  F  G  L  E  T  P  I  R  G  V  A  P  M  L  T  A  I  R  K  L  Q  S  S  P  E  Q  L  T  T  L  H  A  D  F  L  L  L  C  L  L  A  K  C  Y  K  T  G  F  S  V  L  E  D  D  I  Y  E  I  D  Q  P  R  E  F  F  L  Y  C  Y  Y  G :   G  M  V  C  I  G  Q  K  Q  F  R  K  A  L  E  L  L  H  N  :  V  V  T  A  P  M  S  T  L  N  A  I  A  V  E  A  Y  K  K  Y  I  L  V  S  L  I  H  L  G  Q  :  F  S  T  S  F  P  K  Y  T  S  S  V  A  Q  R  N  L  K  N  F  S  Q  :  P  Y  L  E  L  S  N  S  Y  G  T  G  R  I  S  E  L  E  T  F  V  Q  T  N  K  E  K  F  E  S  :  D  N  N  L  G  L  V  M  Q  V  V  S  S  M  Y  K  R  N  I  Q  R  L  T  Q  T  Y  L  T  L  S  L  Q  D  I  A  N  T  V  Q  L  R  D  P  K  Q  A  E  M  H  V  L  Q  M  :  I  E  D  G  E  I  Y  A  T  I  N  Q  K  D  G  M  V  R  F  L  E  D  P  E  Q  Y  K  T  C  G  M  I  E  H  I  D  S  S  I  K  R :   L  M  A  V  S  K  K  L  T  S  M  D  E  L  M  S  C  D  P  M  Y  L  G  K  :  V  G  R  E  R  Q  R  F  D  F  D  D  F  D  G  V  P  Q  K  F  T  I  *  D  *  Q  S  S  V  F  *  V  N  M  A  N  D  A  D  M  F  I  *  N  I  S  K  L  Y  S  I  D  L  K  K  W  L  R  K  *  V  Y  L  T  P  G  S  I  S  G  I  M  F  V  L  F  A  L  L  L  F  V  L  C  G  Q  V  E  L  L  A  L  V  L  F  Y  Y  L  A  R  E  L  F  S  C  S  *  R  L  G  G  *  *  C  S  S  S  L  V  D  I  G  V  L  V  N  L  F  C  S  S  K  F  L  E  W  L  E  I  S  Q  F  L  V  I  T  K  M  D  T  L  L  C  T  Y  L  *  *  *  N  K  M  L  C  M </second_frame>
            <third_frame>   L  L  D  V  N  L  L  K  L  I  S  V  L  I  G  R  E  R  *  I  *  T  *  I  Q  W  N  Q  W  L  L  K  S  K  G  Y  R  A  I  H  Q  T  *  L  S  F  T  T  F  S  N  N  R  K  S  Y  S  I  P  T  S  L  A  C  F  L  L  S  L  N  S  I  L  L  F  T  P  *  V  F  S  I  F   : W  R  H  A  S  H  S  Q  L  Q  R  S  M  L  V  N  C  L  F  L  S  L  D  L  S  I  H  V  L  Q  S  K  S  S  W  R  P  I  S  :  S  F  L  F  V  K  S  S  R  I  M  F  S  D  W  K  L  R  F  V  V  W  L  Q  C  *  L  L  F  V  N  C  N  P  P  L  S  N  *  Q  H  C  M  P  I  F  F  F  F  V  Y  *  Q  S  A  T  K  L  A  S  L  C  W  R  M  T  Y  M  R  L  I  S  H  G  S  F  F  S  I  V  T  T   : G  E  W  F  A  L  D  K  S  S  S  A  K  H  W  N  S  C  T  M :   L  *  L  H  L  C  L  L  *  M  Q  *  Q  L  K  L  T  K  S  T  F  W  F  H  *  F  I  L  G  S :   S  L  P  V  F  P  S  T  L  L  P  W  L  K  G  T  *  R  I  S  L  S :   P  T  W  S  Y  Q  T  V  M  G  L  E  E  S  L  N  L  K  H  L  F  K  Q  T  R  R  S  L  K  A :   I  I  I  L  D  *  *  C  K  *  C  L  L  C  I  S  A  I  F  S  G  *  L  K  R  T  *  L  S  P  S  K  I  L  L  T  L  S  S  *  E  T  P  N  R  Q  K  C  M  C  F  R  * :   L  K  M  V  R  Y  M  Q  Q  S  I  R  R  M  V  W  L  D  F  W  R  I  L  S  S  I  K  R  V  E  *  L  N  I  S  I  H  Q  L  R   : D  *  W  Q  C  R  K  S  *  R  L  W  M  N  L  C  H  V  I  L  C  T  *  E  R :   L  V  G  R  D  R  D  L  I  L  M  I  L  T  V  F  L  R  N  S  L  S  E  T  S  K  V  Q  F  S  E  *  I  W  Q  M  M  L  I  C  S  F  E  I  *  A  N  F  I  P  L  T  S  R  N  G  *  G  N  R  C  I  *  L  L  V  Q  S  V  V  S  C  L  F  Y  L  P  F  C  F  S  F  C  V  G  R  L  N  C  L  L  *  F  Y  F  T  I  *  Q  G  N  C  L  V  V  V  R  G  *  E  D  D  N  V  H  L  L  *  W  T  L  V  F  *  L  I  C  F  V  V  A  S  S  S  N  G  *  R  S  P  S  F  *  L  L  Q  K  W  I  P  F  F  V  L  T  Y  N  S  K  I  R  C  F  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0042D07.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35619" stop="35369"/>
                    <exon start="34870" stop="34755"/>
                    <exon start="34662" stop="34416"/>
                    <exon start="33906" stop="33849"/>
                    <exon start="33721" stop="33632"/>
                    <exon start="33240" stop="33175"/>
                    <exon start="32642" stop="32553"/>
                    <exon start="32404" stop="32246"/>
                    <exon start="32165" stop="32044"/>
                    <exon start="31286" stop="31214"/>
                    <exon start="31125" stop="31057"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1338</number_coding_nucleotides>
                  <number_encoded_amino_acids>446</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLRRESAETHKCVDWAREMNLNMNSMESVVAQIQGLSSNSSDITQLHNFLKQSEELLHSDFSRLLSSLAELDPSIHSLGFLYILEACISFPVAKEHVSELLVSVARFINSCSTEQIQLAPNKFISVCKKFKDHVFGLETPIRGVAPMLTAIRKLQSSPEQLTTLHADFLLLCLLAKCYKTGFSVLEDDIYEIDQPREFFLYCYYGGMVCIGQKQFRKALELLHNVVTAPMSTLNAIAVEAYKKYILVSLIHLGQFSTSFPKYTSSVAQRNLKNFSQPYLELSNSYGTGRISELETFVQTNKEKFESDNNLGLVMQVVSSMYKRNIQRLTQTYLTLSLQDIANTVQLRDPKQAEMHVLQMIEDGEIYATINQKDGMVRFLEDPEQYKTCGMIEHIDSSIKRLMAVSKKLTSMDELMSCDPMYLGKVGRERQRFDFDDFDGVPQKFTI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="35620" e_stop="35369"/>
            <exon e_start="34870" e_stop="34755"/>
            <exon e_start="34662" e_stop="34496"/>
            <exon e_start="33886" e_stop="33849"/>
            <exon e_start="33721" e_stop="33632"/>
            <exon e_start="33240" e_stop="33175"/>
            <exon e_start="32642" e_stop="32553"/>
            <exon e_start="32404" e_stop="32246"/>
            <exon e_start="32165" e_stop="32044"/>
            <exon e_start="31286" e_stop="31214"/>
            <exon e_start="31125" e_stop="30631"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.587" acc_prob="0.805" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.988"/>
          <exon-intron don_prob="0.991" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.683" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.831" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.937"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="35620" e_stop="35369" e_length="252"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="35368" i_stop="34871" i_length="498"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="34870" e_stop="34755" e_length="116"/>
          </exon>
          <intron i_serial="2" don_prob="0.587" acc_prob="0.805">
            <gDNA_intron_boundary i_start="34754" i_stop="34663" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="0.988">
            <gDNA_exon_boundary e_start="34662" e_stop="34496" e_length="167"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="34495" i_stop="33887" i_length="609"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="33886" e_stop="33849" e_length="38"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.999">
            <gDNA_intron_boundary i_start="33848" i_stop="33722" i_length="127"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="33721" e_stop="33632" e_length="90"/>
          </exon>
          <intron i_serial="5" don_prob="0.977" acc_prob="0.683">
            <gDNA_intron_boundary i_start="33631" i_stop="33241" i_length="391"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="33240" e_stop="33175" e_length="66"/>
          </exon>
          <intron i_serial="6" don_prob="0.976" acc_prob="0.976">
            <gDNA_intron_boundary i_start="33174" i_stop="32643" i_length="532"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="32642" e_stop="32553" e_length="90"/>
          </exon>
          <intron i_serial="7" don_prob="0.831" acc_prob="0.961">
            <gDNA_intron_boundary i_start="32552" i_stop="32405" i_length="148"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="32404" e_stop="32246" e_length="159"/>
          </exon>
          <intron i_serial="8" don_prob="0.900" acc_prob="1.000">
            <gDNA_intron_boundary i_start="32245" i_stop="32166" i_length="80"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="32165" e_stop="32044" e_length="122"/>
          </exon>
          <intron i_serial="9" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="32043" i_stop="31287" i_length="757"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="31286" e_stop="31214" e_length="73"/>
          </exon>
          <intron i_serial="10" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="31213" i_stop="31126" i_length="88"/>
          </intron>
          <exon e_serial="11" e_score="0.937">
            <gDNA_exon_boundary e_start="31125" e_stop="30631" e_length="495"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35620" stop="35369"/>
              <exon start="34870" stop="34755"/>
              <exon start="34662" stop="34612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315615" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35604" stop="35369"/>
              <exon start="34870" stop="34755"/>
              <exon start="34662" stop="34496"/>
              <exon start="33886" stop="33849"/>
              <exon start="33721" stop="33632"/>
              <exon start="33240" stop="33178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35600" stop="35369"/>
              <exon start="34870" stop="34755"/>
              <exon start="34662" stop="34496"/>
              <exon start="33886" stop="33849"/>
              <exon start="33721" stop="33632"/>
              <exon start="33240" stop="33175"/>
              <exon start="32642" stop="32553"/>
              <exon start="32404" stop="32337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689339" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33211" stop="33175"/>
              <exon start="32642" stop="32553"/>
              <exon start="32404" stop="32246"/>
              <exon start="32165" stop="32044"/>
              <exon start="31286" stop="31214"/>
              <exon start="31125" stop="30931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376690" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33211" stop="33175"/>
              <exon start="32642" stop="32553"/>
              <exon start="32404" stop="32246"/>
              <exon start="32165" stop="32044"/>
              <exon start="31286" stop="31214"/>
              <exon start="31125" stop="30997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33211" stop="33175"/>
              <exon start="32642" stop="32553"/>
              <exon start="32404" stop="32246"/>
              <exon start="32165" stop="32044"/>
              <exon start="31286" stop="31214"/>
              <exon start="31125" stop="31111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33211" stop="33175"/>
              <exon start="32642" stop="32553"/>
              <exon start="32404" stop="32246"/>
              <exon start="32165" stop="32044"/>
              <exon start="31286" stop="31224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233784" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33196" stop="33175"/>
              <exon start="32642" stop="32553"/>
              <exon start="32404" stop="32246"/>
              <exon start="32165" stop="32044"/>
              <exon start="31286" stop="31214"/>
              <exon start="31125" stop="30998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251731" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32639" stop="32553"/>
              <exon start="32404" stop="32320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32637" stop="32553"/>
              <exon start="32404" stop="32246"/>
              <exon start="32165" stop="32044"/>
              <exon start="31286" stop="31214"/>
              <exon start="31125" stop="31013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32637" stop="32553"/>
              <exon start="32404" stop="32256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32566" stop="32553"/>
              <exon start="32404" stop="32246"/>
              <exon start="32165" stop="32044"/>
              <exon start="31286" stop="31214"/>
              <exon start="31125" stop="30914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266727" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32379" stop="32246"/>
              <exon start="32165" stop="32044"/>
              <exon start="31286" stop="31214"/>
              <exon start="31125" stop="31006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32320" stop="32246"/>
              <exon start="32165" stop="32044"/>
              <exon start="31286" stop="31214"/>
              <exon start="31125" stop="30919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266596" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32077" stop="32044"/>
              <exon start="31286" stop="31214"/>
              <exon start="31125" stop="30631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376689" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCTCTTAGACGTGAATCTGCTGAAACTCATAAGTGTGTTGATTGGGCGAGAGAGATGAATCTGAACATGAATTCAATGGAATCAGTGGTTGCTCAAATCCAAGGGCTATCGAGCAATTCATCAGACATAACTCAGCTTCACAACTTTCTCAAACAATCGGAAGAGCTACTCCATTCCGACTTCTCTCGCTTGCTTTCTTCTCTCGCTGAACTCGATCCTTCTATTCACTCCCTAGGTTTTCTCTATATTCT : GGAGGCATGCATCTCATTCCCAGTTGCAAAGGAGCATGTTAGTGAACTGCTTGTTTCTGTCGCTAGATTTATCAATTCATGTTCTACAGAGCAAATCCAGTTGGCGCCCAATAAGT : TCATTTCTGTTTGTAAAAAGTTCAAGGATCATGTTTTCGGACTGGAAACTCCGATTCGTGGTGTGGCTCCAATGCTGACTGCTATTCGTAAACTGCAATCCTCCCCTGAGCAATTAACAACATTGCATGCCGATTTTCTTCTTCTTTGTCTATTAGCAAAGTGCTAC : AAAAGCAGTTCCGCAAAGCATTGGAACTCTTGCACAAT : GTTGTGACTGCACCTATGTCTACTCTAAATGCAATAGCAGTTGAAGCTTACAAAAAGTACATTCTGGTTTCACTGATTCATCTTGGGCAG : TTCTCTACCAGTTTTCCCAAGTACACTTCTTCCGTGGCTCAAAGGAACTTGAAGAATTTCTCTCAG : CCCTACCTGGAGTTATCAAACAGTTATGGGACTGGAAGAATCTCTGAACTTGAAACATTTGTTCAAACAAACAAGGAGAAGTTTGAAAGC : GATAATAATCTTGGATTAGTGATGCAAGTAGTGTCTTCTATGTATAAGCGCAATATTCAGCGGTTAACTCAAACGTACCTAACTCTCTCCCTCCAAGATATTGCTAACACTGTCCAGCTAAGAGACCCCAAACAGGCAGAAATGCATGTGCTTCAGATG : ATTGAAGATGGTGAGATATATGCAACAATCAATCAGAAGGATGGTATGGTTAGATTTCTGGAGGATCCTGAGCAGTATAAAACGTGTGGAATGATTGAACATATCGATTCATCAATTAAGAG : ATTGATGGCAGTGTCGAAAAAGTTGACGTCTATGGATGAACTTATGTCATGTGATCCTATGTACCTAGGAAAG : GTTGGTAGGGAGAGACAGAGATTTGATTTTGATGATTTTGACGGTGTTCCTCAGAAATTCACTATCTGAGACTAGCAAAGTTCAGTTTTCTGAGTAAATATGGCAAATGATGCTGATATGTTCATTTGAAATATAAGCAAACTTTATTCCATTGACCTCAAGAAATGGCTAAGGAAATAGGTGTATTTAACTCCTGGTTCAATCAGTGGTATCATGTTTGTTTTATTTGCCCTTCTGCTTTTCGTTTTGTGTGGGCAGGTTGAACTGCTTGCTCTAGTTTTATTTTACTATCTAGCAAGGGAACTGTTTAGTTGTAGTTAGAGGCTAGGAGGATGATAATGTTCATCTTCTTTAGTGGACATTGGTGTTTTAGTTAATTTGTTTTGTAGTAGCAAGTTCCTCGAATGGTTAGAGATCTCCCAGTTTTTAGTTATTACAAAAATGGATACCCTTCTTTGTACTTACTTATAATAGTAAAATAAGATGCTTTGCATG</gDNA_template>
            <first_frame> V  S  *  T  *  I  C  *  N  S  *  V  C  *  L  G  E  R  D  E  S  E  H  E  F  N  G  I  S  G  C  S  N  P  R  A  I  E  Q  F  I  R  H  N  S  A  S  Q  L  S  Q  T  I  G  R  A  T  P  F  R  L  L  S  L  A  F  F  S  R  *  T  R  S  F  Y  S  L  P  R  F  S  L  Y  S  :  G  G  M  H  L  I  P  S  C  K  G  A  C  *  *  T  A  C  F  C  R  *  I  Y  Q  F  M  F  Y  R  A  N  P  V  G  A  Q  *  V :   H  F  C  L  *  K  V  Q  G  S  C  F  R  T  G  N  S  D  S  W  C  G  S  N  A  D  C  Y  S  *  T  A  I  L  P  *  A  I  N  N  I  A  C  R  F  S  S  S  L  S  I  S  K  V  L   : Q  K  Q  F  R  K  A  L  E  L  L  H  N  :  V  V  T  A  P  M  S  T  L  N  A  I  A  V  E  A  Y  K  K  Y  I  L  V  S  L  I  H  L  G  Q  :  F  S  T  S  F  P  K  Y  T  S  S  V  A  Q  R  N  L  K  N  F  S  Q  :  P  Y  L  E  L  S  N  S  Y  G  T  G  R  I  S  E  L  E  T  F  V  Q  T  N  K  E  K  F  E  S  :  D  N  N  L  G  L  V  M  Q  V  V  S  S  M  Y  K  R  N  I  Q  R  L  T  Q  T  Y  L  T  L  S  L  Q  D  I  A  N  T  V  Q  L  R  D  P  K  Q  A  E  M  H  V  L  Q  M  :  I  E  D  G  E  I  Y  A  T  I  N  Q  K  D  G  M  V  R  F  L  E  D  P  E  Q  Y  K  T  C  G  M  I  E  H  I  D  S  S  I  K  R :   L  M  A  V  S  K  K  L  T  S  M  D  E  L  M  S  C  D  P  M  Y  L  G  K  :  V  G  R  E  R  Q  R  F  D  F  D  D  F  D  G  V  P  Q  K  F  T  I  *  D  *  Q  S  S  V  F  *  V  N  M  A  N  D  A  D  M  F  I  *  N  I  S  K  L  Y  S  I  D  L  K  K  W  L  R  K  *  V  Y  L  T  P  G  S  I  S  G  I  M  F  V  L  F  A  L  L  L  F  V  L  C  G  Q  V  E  L  L  A  L  V  L  F  Y  Y  L  A  R  E  L  F  S  C  S  *  R  L  G  G  *  *  C  S  S  S  L  V  D  I  G  V  L  V  N  L  F  C  S  S  K  F  L  E  W  L  E  I  S  Q  F  L  V  I  T  K  M  D  T  L  L  C  T  Y  L  *  *  *  N  K  M  L  C  M </first_frame>
            <second_frame>  S  L  R  R  E  S  A  E  T  H  K  C  V  D  W  A  R  E  M  N  L  N  M  N  S  M  E  S  V  V  A  Q  I  Q  G  L  S  S  N  S  S  D  I  T  Q  L  H  N  F  L  K  Q  S  E  E  L  L  H  S  D  F  S  R  L  L  S  S  L  A  E  L  D  P  S  I  H  S  L  G  F  L  Y  I  L :   E  A  C  I  S  F  P  V  A  K  E  H  V  S  E  L  L  V  S  V  A  R  F  I  N  S  C  S  T  E  Q  I  Q  L  A  P  N  K   : F  I  S  V  C  K  K  F  K  D  H  V  F  G  L  E  T  P  I  R  G  V  A  P  M  L  T  A  I  R  K  L  Q  S  S  P  E  Q  L  T  T  L  H  A  D  F  L  L  L  C  L  L  A  K  C  Y  :  K  S  S  S  A  K  H  W  N  S  C  T  M :   L  *  L  H  L  C  L  L  *  M  Q  *  Q  L  K  L  T  K  S  T  F  W  F  H  *  F  I  L  G  S :   S  L  P  V  F  P  S  T  L  L  P  W  L  K  G  T  *  R  I  S  L  S :   P  T  W  S  Y  Q  T  V  M  G  L  E  E  S  L  N  L  K  H  L  F  K  Q  T  R  R  S  L  K  A :   I  I  I  L  D  *  *  C  K  *  C  L  L  C  I  S  A  I  F  S  G  *  L  K  R  T  *  L  S  P  S  K  I  L  L  T  L  S  S  *  E  T  P  N  R  Q  K  C  M  C  F  R  * :   L  K  M  V  R  Y  M  Q  Q  S  I  R  R  M  V  W  L  D  F  W  R  I  L  S  S  I  K  R  V  E  *  L  N  I  S  I  H  Q  L  R   : D  *  W  Q  C  R  K  S  *  R  L  W  M  N  L  C  H  V  I  L  C  T  *  E  R :   L  V  G  R  D  R  D  L  I  L  M  I  L  T  V  F  L  R  N  S  L  S  E  T  S  K  V  Q  F  S  E  *  I  W  Q  M  M  L  I  C  S  F  E  I  *  A  N  F  I  P  L  T  S  R  N  G  *  G  N  R  C  I  *  L  L  V  Q  S  V  V  S  C  L  F  Y  L  P  F  C  F  S  F  C  V  G  R  L  N  C  L  L  *  F  Y  F  T  I  *  Q  G  N  C  L  V  V  V  R  G  *  E  D  D  N  V  H  L  L  *  W  T  L  V  F  *  L  I  C  F  V  V  A  S  S  S  N  G  *  R  S  P  S  F  *  L  L  Q  K  W  I  P  F  F  V  L  T  Y  N  S  K  I  R  C  F  A   </second_frame>
            <third_frame>   L  L  D  V  N  L  L  K  L  I  S  V  L  I  G  R  E  R  *  I  *  T  *  I  Q  W  N  Q  W  L  L  K  S  K  G  Y  R  A  I  H  Q  T  *  L  S  F  T  T  F  S  N  N  R  K  S  Y  S  I  P  T  S  L  A  C  F  L  L  S  L  N  S  I  L  L  F  T  P  *  V  F  S  I  F   : W  R  H  A  S  H  S  Q  L  Q  R  S  M  L  V  N  C  L  F  L  S  L  D  L  S  I  H  V  L  Q  S  K  S  S  W  R  P  I  S  :  S  F  L  F  V  K  S  S  R  I  M  F  S  D  W  K  L  R  F  V  V  W  L  Q  C  *  L  L  F  V  N  C  N  P  P  L  S  N  *  Q  H  C  M  P  I  F  F  F  F  V  Y  *  Q  S  A  T :   K  A  V  P  Q  S  I  G  T  L  A  Q   : C  C  D  C  T  Y  V  Y  S  K  C  N  S  S  *  S  L  Q  K  V  H  S  G  F  T  D  S  S  W  A   : V  L  Y  Q  F  S  Q  V  H  F  F  R  G  S  K  E  L  E  E  F  L  S   : A  L  P  G  V  I  K  Q  L  W  D  W  K  N  L  *  T  *  N  I  C  S  N  K  Q  G  E  V  *  K   : R  *  *  S  W  I  S  D  A  S  S  V  F  Y  V  *  A  Q  Y  S  A  V  N  S  N  V  P  N  S  L  P  P  R  Y  C  *  H  C  P  A  K  R  P  Q  T  G  R  N  A  C  A  S  D   : D  *  R  W  *  D  I  C  N  N  Q  S  E  G  W  Y  G  *  I  S  G  G  S  *  A  V  *  N  V  W  N  D  *  T  Y  R  F  I  N  *  E  :  I  D  G  S  V  E  K  V  D  V  Y  G  *  T  Y  V  M  *  S  Y  V  P  R  K   : G  W  *  G  E  T  E  I  *  F  *  *  F  *  R  C  S  S  E  I  H  Y  L  R  L  A  K  F  S  F  L  S  K  Y  G  K  *  C  *  Y  V  H  L  K  Y  K  Q  T  L  F  H  *  P  Q  E  M  A  K  E  I  G  V  F  N  S  W  F  N  Q  W  Y  H  V  C  F  I  C  P  S  A  F  R  F  V  W  A  G  *  T  A  C  S  S  F  I  L  L  S  S  K  G  T  V  *  L  *  L  E  A  R  R  M  I  M  F  I  F  F  S  G  H  W  C  F  S  *  F  V  L  *  *  Q  V  P  R  M  V  R  D  L  P  V  F  S  Y  Y  K  N  G  Y  P  S  L  Y  L  L  I  I  V  K  *  D  A  L  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0042D07.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34553" stop="34496"/>
                    <exon start="33886" stop="33849"/>
                    <exon start="33721" stop="33632"/>
                    <exon start="33240" stop="33175"/>
                    <exon start="32642" stop="32553"/>
                    <exon start="32404" stop="32246"/>
                    <exon start="32165" stop="32044"/>
                    <exon start="31286" stop="31214"/>
                    <exon start="31125" stop="31057"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>762</number_coding_nucleotides>
                  <number_encoded_amino_acids>254</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AINNIACRFSSSLSISKVLQKQFRKALELLHNVVTAPMSTLNAIAVEAYKKYILVSLIHLGQFSTSFPKYTSSVAQRNLKNFSQPYLELSNSYGTGRISELETFVQTNKEKFESDNNLGLVMQVVSSMYKRNIQRLTQTYLTLSLQDIANTVQLRDPKQAEMHVLQMIEDGEIYATINQKDGMVRFLEDPEQYKTCGMIEHIDSSIKRLMAVSKKLTSMDELMSCDPMYLGKVGRERQRFDFDDFDGVPQKFTI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0042D07.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35384" stop="35369"/>
                    <exon start="34870" stop="34755"/>
                    <exon start="34662" stop="34585"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VFSIFWRHASHSQLQRSMLVNCLFLSLDLSIHVLQSKSSWRPISSFLFVKSSRIMFSDWKLRFVVWLQC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="37568" PGL_stop="36399"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37568" e_stop="37547"/>
            <exon e_start="37371" e_stop="36962"/>
            <exon e_start="36604" e_stop="36399"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.906" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="37568" e_stop="37547" e_length="22"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.906">
            <gDNA_intron_boundary i_start="37546" i_stop="37372" i_length="175"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="37371" e_stop="36962" e_length="410"/>
          </exon>
          <intron i_serial="2" don_prob="0.970" acc_prob="0.999">
            <gDNA_intron_boundary i_start="36961" i_stop="36605" i_length="357"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="36604" e_stop="36399" e_length="206"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37568" stop="37547"/>
              <exon start="37371" stop="36962"/>
              <exon start="36604" stop="36399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312210" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAAATGAATTTAATGGACGAG : GAGATCAATTCATTTGAAGGGGATACCTCAGGAAAATGTAAGGAAGTACTGTTTTAGTGGTGCAATATTATTTCAATTGAGTTGCCATTCTCATAAGTTGTTGTCTTGGTTGCAGGCAAATATTCCCTGAGAACAGGGTATGATGAATAAGGGATCTCAGTTTCAATTCTTGCATCCCCTTGTCTGTGGCATCTTTTGGTTATGACTCTCAGAAATTTGTGAAAATTCATTTCTTCTGTTTTTGGCGGTGATCCAATTTTTGGCTTTTTGCATGCAGAAAGGTCGCAAAATTCCTGTTTGAAAACTTCCTTGCTCGGAAGGGGAAGGAGGAGGTAGAAGTTGTCAACTTGTCCTTGCTTATGAAGGGGAAAACAAAGGGAGACAGTGCAAGGGTGTTCTACGAGATACTG : GTTCTGAAATCAGGAGGCTGTATAGATGTGCGGCAGGATGATGCCTACAGTGACATTCTTTTGCAAAAACTCCCAAGACTAAAGCAGACCTTTGAAGCTGAGTCCTGAATCTATATATATATGTTCACAAAGAGAGCTGTGTTGGTAAATAGTAGCCAGAGGAAACAATCACATGACATATATGCTTTTATATATGTTTGGTAGTA</gDNA_template>
            <first_frame> *  N  E  F  N  G  R   : G  D  Q  F  I  *  R  G  Y  L  R  K  M  *  G  S  T  V  L  V  V  Q  Y  Y  F  N  *  V  A  I  L  I  S  C  C  L  G  C  R  Q  I  F  P  E  N  R  V  *  *  I  R  D  L  S  F  N  S  C  I  P  L  S  V  A  S  F  G  Y  D  S  Q  K  F  V  K  I  H  F  F  C  F  W  R  *  S  N  F  W  L  F  A  C  R  K  V  A  K  F  L  F  E  N  F  L  A  R  K  G  K  E  E  V  E  V  V  N  L  S  L  L  M  K  G  K  T  K  G  D  S  A  R  V  F  Y  E  I  L  :  V  L  K  S  G  G  C  I  D  V  R  Q  D  D  A  Y  S  D  I  L  L  Q  K  L  P  R  L  K  Q  T  F  E  A  E  S  *  I  Y  I  Y  M  F  T  K  R  A  V  L  V  N  S  S  Q  R  K  Q  S  H  D  I  Y  A  F  I  Y  V  W  *   </first_frame>
            <second_frame>  E  M  N  L  M  D  E  :  E  I  N  S  F  E  G  D  T  S  G  K  C  K  E  V  L  F  *  W  C  N  I  I  S  I  E  L  P  F  S  *  V  V  V  L  V  A  G  K  Y  S  L  R  T  G  Y  D  E  *  G  I  S  V  S  I  L  A  S  P  C  L  W  H  L  L  V  M  T  L  R  N  L  *  K  F  I  S  S  V  F  G  G  D  P  I  F  G  F  L  H  A  E  R  S  Q  N  S  C  L  K  T  S  L  L  G  R  G  R  R  R  *  K  L  S  T  C  P  C  L  *  R  G  K  Q  R  E  T  V  Q  G  C  S  T  R  Y  W :   F  *  N  Q  E  A  V  *  M  C  G  R  M  M  P  T  V  T  F  F  C  K  N  S  Q  D  *  S  R  P  L  K  L  S  P  E  S  I  Y  I  C  S  Q  R  E  L  C  W  *  I  V  A  R  G  N  N  H  M  T  Y  M  L  L  Y  M  F  G  S  </second_frame>
            <third_frame>   K  *  I  *  W  T  R :   R  S  I  H  L  K  G  I  P  Q  E  N  V  R  K  Y  C  F  S  G  A  I  L  F  Q  L  S  C  H  S  H  K  L  L  S  W  L  Q  A  N  I  P  *  E  Q  G  M  M  N  K  G  S  Q  F  Q  F  L  H  P  L  V  C  G  I  F  W  L  *  L  S  E  I  C  E  N  S  F  L  L  F  L  A  V  I  Q  F  L  A  F  C  M  Q  K  G  R  K  I  P  V  *  K  L  P  C  S  E  G  E  G  G  G  R  S  C  Q  L  V  L  A  Y  E  G  E  N  K  G  R  Q  C  K  G  V  L  R  D  T   : G  S  E  I  R  R  L  Y  R  C  A  A  G  *  C  L  Q  *  H  S  F  A  K  T  P  K  T  K  A  D  L  *  S  *  V  L  N  L  Y  I  Y  V  H  K  E  S  C  V  G  K  *  *  P  E  E  T  I  T  *  H  I  C  F  Y  I  C  L  V  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0042D07.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37120" stop="36962"/>
                    <exon start="36604" stop="36497"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SNFWLFACRKVAKFLFENFLARKGKEEVEVVNLSLLMKGKTKGDSARVFYEILVLKSGGCIDVRQDDAYSDILLQKLPRLKQTFEAES*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="47788" PGL_stop="46736"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47788" e_stop="47718"/>
            <exon e_start="47569" e_stop="46736"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.744" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="47788" e_stop="47718" e_length="71"/>
          </exon>
          <intron i_serial="1" don_prob="0.744" acc_prob="1.000">
            <gDNA_intron_boundary i_start="47717" i_stop="47570" i_length="148"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="47569" e_stop="46736" e_length="834"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47788" stop="47718"/>
              <exon start="47569" stop="46736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705243" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGATCAGAGTCTTTTATCGAACACCTTGTCTCTCGGCTGCATTCTGTTCATAAGTCTCGCTACCTCGTAG : GACGAGAACTAACAACTCTTGAGATTAGGGATGCTCTCATCCCATACCTTGAGGCCCTCCACGAGGAATATGGAAGCATTTTGGTGGACGTTGTGGAGAGCTTTCCAAACCCACCAGTTGTGGAGAAAATAGAAGAAACTGTTGAAAAAGTACCTATTCCTGTCACACCAGCTTCACCTCCTAGTGCTGTTCTCGACTCCAAGAAACTGAAGGCTCTGGCACGAGTGACTGATATTGGACCCACTGGAAAGCTTCCCCCACATATTTTATACCTTGTTGAACTGGGCATGGACATTGAAAGGATTAGAGTAATCACACGAAAGTTTCCTGCTTTTGCTTACTATAGTCTTGAGGGAAAAATCAAACCAGTAGTTGAGTTCCTCCTTGATCTTGGAGTGCCAAGATCACAGATCCCAACAATTCTCAGCAAAAGGCCTCAACTATGTGGAATTAGTCTCTCAGATAATTTAATTCCAACAATGACATTTTTGGAAGAACTGGGCGTTGATAAAGAACAATGGGCTAAAGTAATCTACCGTTTTCCTGCACTTCTCACTTACAGTAGACCTAAATTGAAAGCAACAGTGGACTTTCTTTATGAAATGGGTCTATCTGCTGAGTGTGTGAGCAAGGTTCTAACCAGATGTCCAAACATCATAAGTTATAGCGTGGAGGACAAGCTAAGGCCTGCAACTGAGTACTTCCGGTCAATGGGGGTTGATGTTGGAGTTCTTCTCTACCGATGTCCTCAAACCTTTGGTCTTAGCATTGAGGCTAACATTAAGCCTGCCACCGAGTTCTTCAAGGATAAGGGGTTCAGTATGACGGAAATTG</gDNA_template>
            <first_frame> Q  I  R  V  F  Y  R  T  P  C  L  S  A  A  F  C  S  *  V  S  L  P  R  R :   T  R  T  N  N  S  *  D  *  G  C  S  H  P  I  P  *  G  P  P  R  G  I  W  K  H  F  G  G  R  C  G  E  L  S  K  P  T  S  C  G  E  N  R  R  N  C  *  K  S  T  Y  S  C  H  T  S  F  T  S  *  C  C  S  R  L  Q  E  T  E  G  S  G  T  S  D  *  Y  W  T  H  W  K  A  S  P  T  Y  F  I  P  C  *  T  G  H  G  H  *  K  D  *  S  N  H  T  K  V  S  C  F  C  L  L  *  S  *  G  K  N  Q  T  S  S  *  V  P  P  *  S  W  S  A  K  I  T  D  P  N  N  S  Q  Q  K  A  S  T  M  W  N  *  S  L  R  *  F  N  S  N  N  D  I  F  G  R  T  G  R  *  *  R  T  M  G  *  S  N  L  P  F  S  C  T  S  H  L  Q  *  T  *  I  E  S  N  S  G  L  S  L  *  N  G  S  I  C  *  V  C  E  Q  G  S  N  Q  M  S  K  H  H  K  L  *  R  G  G  Q  A  K  A  C  N  *  V  L  P  V  N  G  G  *  C  W  S  S  S  L  P  M  S  S  N  L  W  S  *  H  *  G  *  H  *  A  C  H  R  V  L  Q  G  *  G  V  Q  Y  D  G  N   </first_frame>
            <second_frame>  R  S  E  S  F  I  E  H  L  V  S  R  L  H  S  V  H  K  S  R  Y  L  V   : G  R  E  L  T  T  L  E  I  R  D  A  L  I  P  Y  L  E  A  L  H  E  E  Y  G  S  I  L  V  D  V  V  E  S  F  P  N  P  P  V  V  E  K  I  E  E  T  V  E  K  V  P  I  P  V  T  P  A  S  P  P  S  A  V  L  D  S  K  K  L  K  A  L  A  R  V  T  D  I  G  P  T  G  K  L  P  P  H  I  L  Y  L  V  E  L  G  M  D  I  E  R  I  R  V  I  T  R  K  F  P  A  F  A  Y  Y  S  L  E  G  K  I  K  P  V  V  E  F  L  L  D  L  G  V  P  R  S  Q  I  P  T  I  L  S  K  R  P  Q  L  C  G  I  S  L  S  D  N  L  I  P  T  M  T  F  L  E  E  L  G  V  D  K  E  Q  W  A  K  V  I  Y  R  F  P  A  L  L  T  Y  S  R  P  K  L  K  A  T  V  D  F  L  Y  E  M  G  L  S  A  E  C  V  S  K  V  L  T  R  C  P  N  I  I  S  Y  S  V  E  D  K  L  R  P  A  T  E  Y  F  R  S  M  G  V  D  V  G  V  L  L  Y  R  C  P  Q  T  F  G  L  S  I  E  A  N  I  K  P  A  T  E  F  F  K  D  K  G  F  S  M  T  E  I  </second_frame>
            <third_frame>   D  Q  S  L  L  S  N  T  L  S  L  G  C  I  L  F  I  S  L  A  T  S  *  :  D  E  N  *  Q  L  L  R  L  G  M  L  S  S  H  T  L  R  P  S  T  R  N  M  E  A  F  W  W  T  L  W  R  A  F  Q  T  H  Q  L  W  R  K  *  K  K  L  L  K  K  Y  L  F  L  S  H  Q  L  H  L  L  V  L  F  S  T  P  R  N  *  R  L  W  H  E  *  L  I  L  D  P  L  E  S  F  P  H  I  F  Y  T  L  L  N  W  A  W  T  L  K  G  L  E  *  S  H  E  S  F  L  L  L  L  T  I  V  L  R  E  K  S  N  Q  *  L  S  S  S  L  I  L  E  C  Q  D  H  R  S  Q  Q  F  S  A  K  G  L  N  Y  V  E  L  V  S  Q  I  I  *  F  Q  Q  *  H  F  W  K  N  W  A  L  I  K  N  N  G  L  K  *  S  T  V  F  L  H  F  S  L  T  V  D  L  N  *  K  Q  Q  W  T  F  F  M  K  W  V  Y  L  L  S  V  *  A  R  F  *  P  D  V  Q  T  S  *  V  I  A  W  R  T  S  *  G  L  Q  L  S  T  S  G  Q  W  G  L  M  L  E  F  F  S  T  D  V  L  K  P  L  V  L  A  L  R  L  T  L  S  L  P  P  S  S  S  R  I  R  G  S  V  *  R  K  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0042D07.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47787" stop="47718"/>
                    <exon start="47569" stop="46737"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>903</number_coding_nucleotides>
                  <number_encoded_amino_acids>301</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSESFIEHLVSRLHSVHKSRYLVGRELTTLEIRDALIPYLEALHEEYGSILVDVVESFPNPPVVEKIEETVEKVPIPVTPASPPSAVLDSKKLKALARVTDIGPTGKLPPHILYLVELGMDIERIRVITRKFPAFAYYSLEGKIKPVVEFLLDLGVPRSQIPTILSKRPQLCGISLSDNLIPTMTFLEELGVDKEQWAKVIYRFPALLTYSRPKLKATVDFLYEMGLSAECVSKVLTRCPNIISYSVEDKLRPATEYFRSMGVDVGVLLYRCPQTFGLSIEANIKPATEFFKDKGFSMTEI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="50928" PGL_stop="50318"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50928" e_stop="50318"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.925"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.925">
            <gDNA_exon_boundary e_start="50928" e_stop="50318" e_length="611"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50928" stop="50318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545268" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATGAGGCAGAGCGGGTGATACTGGATGAACTTGCTAGGAAGTTGGTCTTAACCGGTGCTCAGGTGAAGAAGCACATTAAGGGCGGTAAAGGATCTCCACATATGAAAGTTCTTACAATGGTTGAAGCTGCTGGAATATTGCGTTGGGGAAAATCAAGCAGGCGTAATGTGGTATGCCAAGAGGCAGAAGTGGGACCAAGTTTGAGGTTTCAAAAGATGAGGCTAAGGAAAGGGGACGCTGAGCTTCCTGGAATTTTTAGGGTGATCACATCCAAGAACAAGGAAGTGCACTTTGTGTGTGAGGGCGGTTCTGAGATGGCAGCGCTTTGGGTAAGGGGGATAAAACTTGTGACAAGAGAAGCTATGTTTCGCTAGTAGAGATATTGAGGACAAGAGTTAAGATGTATAGTTATTAGCTTTACTACTTCTTCCATTTTGTCATATGCTTAGATGAATTCTTACTTATGTAGAGTATCTCTTAGTATCTGTAGTACTTCGTCTTGTAGTACTTCGTTTGTAAATGTCATTTTTAACGAGAAGAAGAAAGGTTGAGAAGACCACAGCTTCATCATACATGAGTTGGGTTTTACTTTTCTTTCTTTCACGCTTCA</gDNA_template>
            <first_frame> N  E  A  E  R  V  I  L  D  E  L  A  R  K  L  V  L  T  G  A  Q  V  K  K  H  I  K  G  G  K  G  S  P  H  M  K  V  L  T  M  V  E  A  A  G  I  L  R  W  G  K  S  S  R  R  N  V  V  C  Q  E  A  E  V  G  P  S  L  R  F  Q  K  M  R  L  R  K  G  D  A  E  L  P  G  I  F  R  V  I  T  S  K  N  K  E  V  H  F  V  C  E  G  G  S  E  M  A  A  L  W  V  R  G  I  K  L  V  T  R  E  A  M  F  R  *  *  R  Y  *  G  Q  E  L  R  C  I  V  I  S  F  T  T  S  S  I  L  S  Y  A  *  M  N  S  Y  L  C  R  V  S  L  S  I  C  S  T  S  S  C  S  T  S  F  V  N  V  I  F  N  E  K  K  K  G  *  E  D  H  S  F  I  I  H  E  L  G  F  T  F  L  S  F  T  L   </first_frame>
            <second_frame>  M  R  Q  S  G  *  Y  W  M  N  L  L  G  S  W  S  *  P  V  L  R  *  R  S  T  L  R  A  V  K  D  L  H  I  *  K  F  L  Q  W  L  K  L  L  E  Y  C  V  G  E  N  Q  A  G  V  M  W  Y  A  K  R  Q  K  W  D  Q  V  *  G  F  K  R  *  G  *  G  K  G  T  L  S  F  L  E  F  L  G  *  S  H  P  R  T  R  K  C  T  L  C  V  R  A  V  L  R  W  Q  R  F  G  *  G  G  *  N  L  *  Q  E  K  L  C  F  A  S  R  D  I  E  D  K  S  *  D  V  *  L  L  A  L  L  L  L  P  F  C  H  M  L  R  *  I  L  T  Y  V  E  Y  L  L  V  S  V  V  L  R  L  V  V  L  R  L  *  M  S  F  L  T  R  R  R  K  V  E  K  T  T  A  S  S  Y  M  S  W  V  L  L  F  F  L  S  R  F  </second_frame>
            <third_frame>   *  G  R  A  G  D  T  G  *  T  C  *  E  V  G  L  N  R  C  S  G  E  E  A  H  *  G  R  *  R  I  S  T  Y  E  S  S  Y  N  G  *  S  C  W  N  I  A  L  G  K  I  K  Q  A  *  C  G  M  P  R  G  R  S  G  T  K  F  E  V  S  K  D  E  A  K  E  R  G  R  *  A  S  W  N  F  *  G  D  H  I  Q  E  Q  G  S  A  L  C  V  *  G  R  F  *  D  G  S  A  L  G  K  G  D  K  T  C  D  K  R  S  Y  V  S  L  V  E  I  L  R  T  R  V  K  M  Y  S  Y  *  L  Y  Y  F  F  H  F  V  I  C  L  D  E  F  L  L  M  *  S  I  S  *  Y  L  *  Y  F  V  L  *  Y  F  V  C  K  C  H  F  *  R  E  E  E  R  L  R  R  P  Q  L  H  H  T  *  V  G  F  Y  F  S  F  F  H  A  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0042D07.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50928" stop="50554"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>372</number_coding_nucleotides>
                  <number_encoded_amino_acids>124</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NEAERVILDELARKLVLTGAQVKKHIKGGKGSPHMKVLTMVEAAGILRWGKSSRRNVVCQEAEVGPSLRFQKMRLRKGDAELPGIFRVITSKNKEVHFVCEGGSEMAALWVRGIKLVTREAMFR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="52907" PGL_stop="51649"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52907" e_stop="52807"/>
            <exon e_start="52420" e_stop="52283"/>
            <exon e_start="52083" e_stop="51649"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.974" acc_prob="0.998" e_score="0.990"/>
          <exon-intron don_prob="0.982" acc_prob="0.353" e_score="1.000"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="52907" e_stop="52807" e_length="101"/>
          </exon>
          <intron i_serial="1" don_prob="0.974" acc_prob="0.998">
            <gDNA_intron_boundary i_start="52806" i_stop="52421" i_length="386"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="52420" e_stop="52283" e_length="138"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.353">
            <gDNA_intron_boundary i_start="52282" i_stop="52084" i_length="199"/>
          </intron>
          <exon e_serial="3" e_score="0.984">
            <gDNA_exon_boundary e_start="52083" e_stop="51649" e_length="435"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52907" stop="52807"/>
              <exon start="52420" stop="52283"/>
              <exon start="52083" stop="51649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52906" stop="52807"/>
              <exon start="52420" stop="52283"/>
              <exon start="52083" stop="51758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311600" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCTCATGGAATCGGACCTGATTCGACCTCGTATTGCTATACATGCTTTCTTCACTGCATGCTGCCGGGGATATGTAAATGTGGTGGACACTCTCCTTAAG : CTTGGAGTGACTGTGAATGCTACAAATCGTGTGTTGCTCCAGTCAAGTAAACCTTCTCTGCATACAAATGTGGACTGCACAGCACTTGTGGCTGCGATTGTTTGTAGGCAAGTCTCTGTAGTTCGTCTGTTGCTTGAG : GCTGGTGCAAAAACTGATGGACCAGTCCAACTTGGAGCCTGGTCCTGGGATGCAGCTTCAGGTGAAGAATTTCGAGTAGGTGCTGGGTTAGCAGATTCCTATGCCATTACTTGGTGTGCTGTGGAGTATTTTGAAGCAAGTGGCGCTATTTTGCAAATGCTCCTCCAGCGGCTTGATTCCTGCACAACTCTCAGTGGAAGAACTCTTCTCCACCATGCTATTCTTTGTGGTAATGCAGGAGCAGTTTCGGTGCTTTTGAAATGCGGTGCTTATGTGGAATCTCCAGTTATAACCACCCGGAACATTGAGTTTCGTCCTATACACATGGCAGCCCGACTTGGGTTCTCAAGCGTTCTTAAATGTTTGATTGAATTTGGCTGTGATCTGGATGCAAGAACGGACACAGGAGATACAGCTTTAATGATCTCTGCAAGA</gDNA_template>
            <first_frame> C  S  W  N  R  T  *  F  D  L  V  L  L  Y  M  L  S  S  L  H  A  A  G  D  M  *  M  W  W  T  L  S  L  S :   L  E  *  L  *  M  L  Q  I  V  C  C  S  S  Q  V  N  L  L  C  I  Q  M  W  T  A  Q  H  L  W  L  R  L  F  V  G  K  S  L  *  F  V  C  C  L  R :   L  V  Q  K  L  M  D  Q  S  N  L  E  P  G  P  G  M  Q  L  Q  V  K  N  F  E  *  V  L  G  *  Q  I  P  M  P  L  L  G  V  L  W  S  I  L  K  Q  V  A  L  F  C  K  C  S  S  S  G  L  I  P  A  Q  L  S  V  E  E  L  F  S  T  M  L  F  F  V  V  M  Q  E  Q  F  R  C  F  *  N  A  V  L  M  W  N  L  Q  L  *  P  P  G  T  L  S  F  V  L  Y  T  W  Q  P  D  L  G  S  Q  A  F  L  N  V  *  L  N  L  A  V  I  W  M  Q  E  R  T  Q  E  I  Q  L  *  *  S  L  Q   </first_frame>
            <second_frame>  A  H  G  I  G  P  D  S  T  S  Y  C  Y  T  C  F  L  H  C  M  L  P  G  I  C  K  C  G  G  H  S  P  *   : A  W  S  D  C  E  C  Y  K  S  C  V  A  P  V  K  *  T  F  S  A  Y  K  C  G  L  H  S  T  C  G  C  D  C  L  *  A  S  L  C  S  S  S  V  A  *   : G  W  C  K  N  *  W  T  S  P  T  W  S  L  V  L  G  C  S  F  R  *  R  I  S  S  R  C  W  V  S  R  F  L  C  H  Y  L  V  C  C  G  V  F  *  S  K  W  R  Y  F  A  N  A  P  P  A  A  *  F  L  H  N  S  Q  W  K  N  S  S  P  P  C  Y  S  L  W  *  C  R  S  S  F  G  A  F  E  M  R  C  L  C  G  I  S  S  Y  N  H  P  E  H  *  V  S  S  Y  T  H  G  S  P  T  W  V  L  K  R  S  *  M  F  D  *  I  W  L  *  S  G  C  K  N  G  H  R  R  Y  S  F  N  D  L  C  K  </second_frame>
            <third_frame>   L  M  E  S  D  L  I  R  P  R  I  A  I  H  A  F  F  T  A  C  C  R  G  Y  V  N  V  V  D  T  L  L  K  :  L  G  V  T  V  N  A  T  N  R  V  L  L  Q  S  S  K  P  S  L  H  T  N  V  D  C  T  A  L  V  A  A  I  V  C  R  Q  V  S  V  V  R  L  L  L  E  :  A  G  A  K  T  D  G  P  V  Q  L  G  A  W  S  W  D  A  A  S  G  E  E  F  R  V  G  A  G  L  A  D  S  Y  A  I  T  W  C  A  V  E  Y  F  E  A  S  G  A  I  L  Q  M  L  L  Q  R  L  D  S  C  T  T  L  S  G  R  T  L  L  H  H  A  I  L  C  G  N  A  G  A  V  S  V  L  L  K  C  G  A  Y  V  E  S  P  V  I  T  T  R  N  I  E  F  R  P  I  H  M  A  A  R  L  G  F  S  S  V  L  K  C  L  I  E  F  G  C  D  L  D  A  R  T  D  T  G  D  T  A  L  M  I  S  A  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0042D07.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52905" stop="52807"/>
                    <exon start="52420" stop="52283"/>
                    <exon start="52083" stop="51649"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>672</number_coding_nucleotides>
                  <number_encoded_amino_acids>224</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LMESDLIRPRIAIHAFFTACCRGYVNVVDTLLKLGVTVNATNRVLLQSSKPSLHTNVDCTALVAAIVCRQVSVVRLLLEAGAKTDGPVQLGAWSWDAASGEEFRVGAGLADSYAITWCAVEYFEASGAILQMLLQRLDSCTTLSGRTLLHHAILCGNAGAVSVLLKCGAYVESPVITTRNIEFRPIHMAARLGFSSVLKCLIEFGCDLDARTDTGDTALMISAR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="64813" PGL_stop="63143"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64813" e_stop="64762"/>
            <exon e_start="64688" e_stop="64630"/>
            <exon e_start="64540" e_stop="64408"/>
            <exon e_start="64335" e_stop="64239"/>
            <exon e_start="64149" e_stop="64083"/>
            <exon e_start="63778" e_stop="63680"/>
            <exon e_start="63586" e_stop="63497"/>
            <exon e_start="63407" e_stop="63253"/>
            <exon e_start="63173" e_stop="63143"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.943" e_score="1.000"/>
          <exon-intron don_prob="0.626" acc_prob="0.127" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.941" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.954" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.851" e_score="1.000"/>
          <exon-only e_score="0.968"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="64813" e_stop="64762" e_length="52"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.975">
            <gDNA_intron_boundary i_start="64761" i_stop="64689" i_length="73"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64688" e_stop="64630" e_length="59"/>
          </exon>
          <intron i_serial="2" don_prob="0.984" acc_prob="0.943">
            <gDNA_intron_boundary i_start="64629" i_stop="64541" i_length="89"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="64540" e_stop="64408" e_length="133"/>
          </exon>
          <intron i_serial="3" don_prob="0.626" acc_prob="0.127">
            <gDNA_intron_boundary i_start="64407" i_stop="64336" i_length="72"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="64335" e_stop="64239" e_length="97"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="64238" i_stop="64150" i_length="89"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="64149" e_stop="64083" e_length="67"/>
          </exon>
          <intron i_serial="5" don_prob="0.984" acc_prob="0.941">
            <gDNA_intron_boundary i_start="64082" i_stop="63779" i_length="304"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="63778" e_stop="63680" e_length="99"/>
          </exon>
          <intron i_serial="6" don_prob="0.974" acc_prob="0.999">
            <gDNA_intron_boundary i_start="63679" i_stop="63587" i_length="93"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="63586" e_stop="63497" e_length="90"/>
          </exon>
          <intron i_serial="7" don_prob="0.954" acc_prob="0.988">
            <gDNA_intron_boundary i_start="63496" i_stop="63408" i_length="89"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="63407" e_stop="63253" e_length="155"/>
          </exon>
          <intron i_serial="8" don_prob="0.983" acc_prob="0.851">
            <gDNA_intron_boundary i_start="63252" i_stop="63174" i_length="79"/>
          </intron>
          <exon e_serial="9" e_score="0.968">
            <gDNA_exon_boundary e_start="63173" e_stop="63143" e_length="31"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64813" stop="64762"/>
              <exon start="64688" stop="64630"/>
              <exon start="64540" stop="64408"/>
              <exon start="64335" stop="64239"/>
              <exon start="64149" stop="64083"/>
              <exon start="63778" stop="63680"/>
              <exon start="63586" stop="63497"/>
              <exon start="63407" stop="63253"/>
              <exon start="63173" stop="63143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537913" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64812" stop="64762"/>
              <exon start="64688" stop="64630"/>
              <exon start="64540" stop="64408"/>
              <exon start="64335" stop="64239"/>
              <exon start="64149" stop="64083"/>
              <exon start="63778" stop="63680"/>
              <exon start="63586" stop="63497"/>
              <exon start="63407" stop="63372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264998" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAAAAGCGCTCGACGAGTATTTGTCTCTTCTTGTTGGCCTTACTAGAAAAG : AATTCGGGAATCAAGAATTGACTGGATTCAAGTGGAAAAACTTGGAAGATGGGCAAGAG : GAAACCTCTGTAGCAAACTCCTGGTTTGAATTACTGTCTGTCCTTCACATGATGGCTATGTTAACATTAGTAGAGGCAAATATGAAGTTGGCACCAAGAGACATTGCTATGACTGAACGGGCTGTGTCAGGAG : ATTGCATGAGGGATACTGTTGATTTGCTGCTGAAAGCATCAGGTTATTTGGATTTCTGTGTCCAAAATGTTCTTGTCCACATACCACCTGATATCAA : GAACAAGTTGCCTAAACATCTGCATCAGGGTATTCTCGAAGCTACCTCAAATCAAGCACTAGCACAG : GGAACTGAAATTCAATTAGGTTTGGCTCTTGAAAGTCAAAATGCTACTTTATCAGTGAAGAGGAGGCTGGCATGTGAAGCAGTAAGCTACTACGCACAG : ACACTTTGCTGCTTGTCTGGAGACAATAATTTCCACAGAACAGCGAAAAAGCATCTGTTGTTCATCAAATGGAAATATCTTGAAGCAAAG : GCTGCAGCTTACTACTACCACGGTATAATCATTGACAAGGGAACAGAACCATCCTGCCACGTTAGTGCAGTATGCTGTTTCCTCGCAGCAGAAGAACTACTTGCTGAGAGCAAAAAAGCCTCCTTAAGTTTCTGCCTTGCAGAACCTATCACCAG : AACTCCTCCAGCATGGGGTGTTATGAAACAT</gDNA_template>
            <first_frame> Q  K  A  L  D  E  Y  L  S  L  L  V  G  L  T  R  K   : E  F  G  N  Q  E  L  T  G  F  K  W  K  N  L  E  D  G  Q  E  :  E  T  S  V  A  N  S  W  F  E  L  L  S  V  L  H  M  M  A  M  L  T  L  V  E  A  N  M  K  L  A  P  R  D  I  A  M  T  E  R  A  V  S  G   : D  C  M  R  D  T  V  D  L  L  L  K  A  S  G  Y  L  D  F  C  V  Q  N  V  L  V  H  I  P  P  D  I  K :   N  K  L  P  K  H  L  H  Q  G  I  L  E  A  T  S  N  Q  A  L  A  Q  :  G  T  E  I  Q  L  G  L  A  L  E  S  Q  N  A  T  L  S  V  K  R  R  L  A  C  E  A  V  S  Y  Y  A  Q  :  T  L  C  C  L  S  G  D  N  N  F  H  R  T  A  K  K  H  L  L  F  I  K  W  K  Y  L  E  A  K  :  A  A  A  Y  Y  Y  H  G  I  I  I  D  K  G  T  E  P  S  C  H  V  S  A  V  C  C  F  L  A  A  E  E  L  L  A  E  S  K  K  A  S  L  S  F  C  L  A  E  P  I  T  R :   T  P  P  A  W  G  V  M  K  H </first_frame>
            <second_frame>  K  K  R  S  T  S  I  C  L  F  L  L  A  L  L  E  K  :  N  S  G  I  K  N  *  L  D  S  S  G  K  T  W  K  M  G  K  R :   K  P  L  *  Q  T  P  G  L  N  Y  C  L  S  F  T  *  W  L  C  *  H  *  *  R  Q  I  *  S  W  H  Q  E  T  L  L  *  L  N  G  L  C  Q  E  :  I  A  *  G  I  L  L  I  C  C  *  K  H  Q  V  I  W  I  S  V  S  K  M  F  L  S  T  Y  H  L  I  S   : R  T  S  C  L  N  I  C  I  R  V  F  S  K  L  P  Q  I  K  H  *  H  R :   E  L  K  F  N  *  V  W  L  L  K  V  K  M  L  L  Y  Q  *  R  G  G  W  H  V  K  Q  *  A  T  T  H  R :   H  F  A  A  C  L  E  T  I  I  S  T  E  Q  R  K  S  I  C  C  S  S  N  G  N  I  L  K  Q  R :   L  Q  L  T  T  T  T  V  *  S  L  T  R  E  Q  N  H  P  A  T  L  V  Q  Y  A  V  S  S  Q  Q  K  N  Y  L  L  R  A  K  K  P  P  *  V  S  A  L  Q  N  L  S  P   : E  L  L  Q  H  G  V  L  *  N   </second_frame>
            <third_frame>   K  S  A  R  R  V  F  V  S  S  C  W  P  Y  *  K  R :   I  R  E  S  R  I  D  W  I  Q  V  E  K  L  G  R  W  A  R   : G  N  L  C  S  K  L  L  V  *  I  T  V  C  P  S  H  D  G  Y  V  N  I  S  R  G  K  Y  E  V  G  T  K  R  H  C  Y  D  *  T  G  C  V  R  R :   L  H  E  G  Y  C  *  F  A  A  E  S  I  R  L  F  G  F  L  C  P  K  C  S  C  P  H  T  T  *  Y  Q  :  E  Q  V  A  *  T  S  A  S  G  Y  S  R  S  Y  L  K  S  S  T  S  T   : G  N  *  N  S  I  R  F  G  S  *  K  S  K  C  Y  F  I  S  E  E  E  A  G  M  *  S  S  K  L  L  R  T   : D  T  L  L  L  V  W  R  Q  *  F  P  Q  N  S  E  K  A  S  V  V  H  Q  M  E  I  S  *  S  K   : G  C  S  L  L  L  P  R  Y  N  H  *  Q  G  N  R  T  I  L  P  R  *  C  S  M  L  F  P  R  S  R  R  T  T  C  *  E  Q  K  S  L  L  K  F  L  P  C  R  T  Y  H  Q  :  N  S  S  S  M  G  C  Y  E  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0042D07.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64813" stop="64762"/>
                    <exon start="64688" stop="64630"/>
                    <exon start="64540" stop="64408"/>
                    <exon start="64335" stop="64239"/>
                    <exon start="64149" stop="64083"/>
                    <exon start="63778" stop="63680"/>
                    <exon start="63586" stop="63497"/>
                    <exon start="63407" stop="63253"/>
                    <exon start="63173" stop="63143"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>783</number_coding_nucleotides>
                  <number_encoded_amino_acids>261</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QKALDEYLSLLVGLTRKEFGNQELTGFKWKNLEDGQEETSVANSWFELLSVLHMMAMLTLVEANMKLAPRDIAMTERAVSGDCMRDTVDLLLKASGYLDFCVQNVLVHIPPDIKNKLPKHLHQGILEATSNQALAQGTEIQLGLALESQNATLSVKRRLACEAVSYYAQTLCCLSGDNNFHRTAKKHLLFIKWKYLEAKAAAYYYHGIIIDKGTEPSCHVSAVCCFLAAEELLAESKKASLSFCLAEPITRTPPAWGVMKH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="71756" PGL_stop="72418"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71756" e_stop="72418"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="71756" e_stop="72418" e_length="663"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71756" stop="72418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314987" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCTTTACTTGCTCTGCATGCCAACTACCCTCAATTTTGATCTCTGTTTTTTTTTAAAAAAAAATTTCAATCTTGTTCTTCTCCCAAGCAAAAAAAATATAATAAAAAAGAACATTCCTTTAATTTGCAATATAAGGCAATCTATTCGCATTTTTAATGAGGTTTTATCAAGATCGTAGCAGCATTAACTGTTTGGTAGCTCAATCTTGACTTGTCTGCACATTTAGACTTTAATGCTTTTCATTTTCACTGAACTAGAAAGGGTCCACCCATATAATTTCCTTATTCATGATTAGCCAAGAACGTAAAATGGGTTGCTTCAAGATACTTGGAAACTTGGCTCCATTTTGAAGTCACTGCTAAATGGGTTTCTTCAATATTTTTGTGATAGTATTGGTTATTTGCGCTTTCTTTATAGCAAATACTTATCAGTTACAGTCCTATGAAATTCAAGCTCTTCTTCAGTTGAGGAAGCACTTGGAATATCCAGTTCAGTTGGATGTTTGGGAGAATTACCATGGAGATTTTTGCAGCTTGACTTCAACACTGCATATGAGCATTAACTGTCAAGATAACTCTGTTACTGAACTCAAAATCAAAGGAGATAAGTTAGTTAAGTTGAATGAATTTCATGGATTTGCAATTCCAAACCAAACATTATCT</gDNA_template>
            <first_frame> S  F  T  C  S  A  C  Q  L  P  S  I  L  I  S  V  F  F  *  K  K  I  S  I  L  F  F  S  Q  A  K  K  I  *  *  K  R  T  F  L  *  F  A  I  *  G  N  L  F  A  F  L  M  R  F  Y  Q  D  R  S  S  I  N  C  L  V  A  Q  S  *  L  V  C  T  F  R  L  *  C  F  S  F  S  L  N  *  K  G  S  T  H  I  I  S  L  F  M  I  S  Q  E  R  K  M  G  C  F  K  I  L  G  N  L  A  P  F  *  S  H  C  *  M  G  F  F  N  I  F  V  I  V  L  V  I  C  A  F  F  I  A  N  T  Y  Q  L  Q  S  Y  E  I  Q  A  L  L  Q  L  R  K  H  L  E  Y  P  V  Q  L  D  V  W  E  N  Y  H  G  D  F  C  S  L  T  S  T  L  H  M  S  I  N  C  Q  D  N  S  V  T  E  L  K  I  K  G  D  K  L  V  K  L  N  E  F  H  G  F  A  I  P  N  Q  T  L  S </first_frame>
            <second_frame>  P  L  L  A  L  H  A  N  Y  P  Q  F  *  S  L  F  F  F  K  K  K  F  Q  S  C  S  S  P  K  Q  K  K  Y  N  K  K  E  H  S  F  N  L  Q  Y  K  A  I  Y  S  H  F  *  *  G  F  I  K  I  V  A  A  L  T  V  W  *  L  N  L  D  L  S  A  H  L  D  F  N  A  F  H  F  H  *  T  R  K  G  P  P  I  *  F  P  Y  S  *  L  A  K  N  V  K  W  V  A  S  R  Y  L  E  T  W  L  H  F  E  V  T  A  K  W  V  S  S  I  F  L  *  *  Y  W  L  F  A  L  S  L  *  Q  I  L  I  S  Y  S  P  M  K  F  K  L  F  F  S  *  G  S  T  W  N  I  Q  F  S  W  M  F  G  R  I  T  M  E  I  F  A  A  *  L  Q  H  C  I  *  A  L  T  V  K  I  T  L  L  L  N  S  K  S  K  E  I  S  *  L  S  *  M  N  F  M  D  L  Q  F  Q  T  K  H  Y   </second_frame>
            <third_frame>   L  Y  L  L  C  M  P  T  T  L  N  F  D  L  C  F  F  L  K  K  N  F  N  L  V  L  L  P  S  K  K  N  I  I  K  K  N  I  P  L  I  C  N  I  R  Q  S  I  R  I  F  N  E  V  L  S  R  S  *  Q  H  *  L  F  G  S  S  I  L  T  C  L  H  I  *  T  L  M  L  F  I  F  T  E  L  E  R  V  H  P  Y  N  F  L  I  H  D  *  P  R  T  *  N  G  L  L  Q  D  T  W  K  L  G  S  I  L  K  S  L  L  N  G  F  L  Q  Y  F  C  D  S  I  G  Y  L  R  F  L  Y  S  K  Y  L  S  V  T  V  L  *  N  S  S  S  S  S  V  E  E  A  L  G  I  S  S  S  V  G  C  L  G  E  L  P  W  R  F  L  Q  L  D  F  N  T  A  Y  E  H  *  L  S  R  *  L  C  Y  *  T  Q  N  Q  R  R  *  V  S  *  V  E  *  I  S  W  I  C  N  S  K  P  N  I  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0042D07.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72119" stop="72418"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MGFFNIFVIVLVICAFFIANTYQLQSYEIQALLQLRKHLEYPVQLDVWENYHGDFCSLTSTLHMSINCQDNSVTELKIKGDKLVKLNEFHGFAIPNQTLS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="73273" PGL_stop="77321"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73273" e_stop="73466"/>
            <exon e_start="73564" e_stop="73697"/>
            <exon e_start="74238" e_stop="74481"/>
            <exon e_start="74910" e_stop="75115"/>
            <exon e_start="75204" e_stop="75229"/>
            <exon e_start="75389" e_stop="75500"/>
            <exon e_start="75838" e_stop="76388"/>
            <exon e_start="77240" e_stop="77321"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.626" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.486" e_score="1.000"/>
          <exon-intron don_prob="0.870" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.996"/>
          <exon-only e_score="0.573"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="73273" e_stop="73466" e_length="194"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.626">
            <gDNA_intron_boundary i_start="73467" i_stop="73563" i_length="97"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="73564" e_stop="73697" e_length="134"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.966">
            <gDNA_intron_boundary i_start="73698" i_stop="74237" i_length="540"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="74238" e_stop="74481" e_length="244"/>
          </exon>
          <intron i_serial="3" don_prob="0.985" acc_prob="0.486">
            <gDNA_intron_boundary i_start="74482" i_stop="74909" i_length="428"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="74910" e_stop="75115" e_length="206"/>
          </exon>
          <intron i_serial="4" don_prob="0.870" acc_prob="0.992">
            <gDNA_intron_boundary i_start="75116" i_stop="75203" i_length="88"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="75204" e_stop="75229" e_length="26"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.984">
            <gDNA_intron_boundary i_start="75230" i_stop="75388" i_length="159"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="75389" e_stop="75500" e_length="112"/>
          </exon>
          <intron i_serial="6" don_prob="0.989" acc_prob="0.990">
            <gDNA_intron_boundary i_start="75501" i_stop="75837" i_length="337"/>
          </intron>
          <exon e_serial="7" e_score="0.996">
            <gDNA_exon_boundary e_start="75838" e_stop="76388" e_length="551"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="76389" i_stop="77239" i_length="851"/>
          </intron>
          <exon e_serial="8" e_score="0.573">
            <gDNA_exon_boundary e_start="77240" e_stop="77321" e_length="82"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73273" stop="73466"/>
              <exon start="73564" stop="73697"/>
              <exon start="74238" stop="74481"/>
              <exon start="74910" stop="75115"/>
              <exon start="75204" stop="75229"/>
              <exon start="75389" stop="75464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74371" stop="74481"/>
              <exon start="74910" stop="75115"/>
              <exon start="75204" stop="75229"/>
              <exon start="75389" stop="75500"/>
              <exon start="75838" stop="75967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75925" stop="76388"/>
              <exon start="77240" stop="77321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724024" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACGAATTACAGGAAAAGAAATAGCATTATTAACAGGTGTCATTGGGGGGATTGTAATTGTTGTGGTGTTTCTGTTAGTTGTGCTTCTCATCTTCCGTAGAAAACGACATGCGCATAACATGGTGGATAAGCACATCCCTCCGAAAGTTGTGCAAAGTACACAGCCGGTTCCCTCTGGACTCCTAGTAAATGCCA : GAGTCATTTCTCAAGTGGCAAACACAGGATCACAAGGTGCCCCATCATATCGAGTGTTCTCCATGGAAGAATTGCTAGAAGCAACAGAAAATTTTGATCAGTCAGCATTACTTGGTGAAGGTTCAGTTGGAAAA : ATTTACAAGGGAAGATTAGAGAATGGAGCTTACATTGCTGTAAGGTCACTAAATGTGTACAGAAGATACTCTAACCGGAACCTCAAACTGCGATTGGACTTACTGTCAAAGTTTCGTCACCCCCATTTAGTTAGCCTTCTGGGTCACTGCATTGATGGTGGAGCACCAGATGATTCAACTGTCCCCCGAATTTTTCTCATTTATGAATATATCTCTAATGGAAACTTTCGTGCTCATCTATCAG : AAAATAGTTCAAGAAAGATCCTCAAGTGGTTAGACAGGTTGTCAGTGCTGATTGGTGTTGCCAAGGCAGTGCACTTTCTTCACACAGGTGTAATTCCTTCTTCATTTAGCAACCGCTTGAAGACGAGTAACATATTGCTTGATGAGCATAACATGGCAAAACTAAGTGATTTTGGGATGTCCATTCTTATGGAAGAAAGTGAAAAG : GCAAAAGGAGATGACGTCACCTCCTG : GCATATGACAAAGAAAGAGGACGATGTTTATAACTTTGGTTTCATATTACTGGAATCGCTGGTTGGCCCTTCTGTCAGTGGAAAAGGAGAAGCATTTTTGATGAATGAAATG : GCATCCTTTGGTAGCCAAGATGGTCGACGCAGAATTGTGGATCCAATAGTGCTAGCCACTAGCTCCAATGAGTCTTTGTCAATTGTAATATCCATCACCAACAAATGCATATCTACAGAGTCGTCAACTCGGCCCTCGTTTGAGGATGTTCTGTGGAACCTACAATATGCTGCTCAAGTTCAAGCTACAGCTGATGCAGATCAGAAATCCGATGCTACTTCACCGACATAAGGAGTCCAAGCGCATACTTAATTTGGTCAGAGCATAGGAGAATGTTAGCTGATTAATTTCATGATGGTTGTGGGAGTACCAACCGGTAGGCTAGCCTTAAAGCTCAAGTTTAAGCTACAGGTCCCCCTATATTTTGTATCAGAAGTGTAAATTTTGTTGATTCTAGTAATAGGTGATGTTTCCATATAGCATAGACCCTCATTTTAAATTCCATCATTGCAACTAGGCAATTGAAGTCGTACAAATCTAGATTCAGACAAGACAATACATATGTTTGGTGCAACGGAAATAAAAAGAAGAAGATATGATAGACATCAAAT : AACAATAATTAATAAAAAAATTAAATGAAATTTATATCTTAATCTACTACCTCAAAAACTAACTAAATATAAAACGAAGAAA</gDNA_template>
            <first_frame> T  N  Y  R  K  R  N  S  I  I  N  R  C  H  W  G  D  C  N  C  C  G  V  S  V  S  C  A  S  H  L  P  *  K  T  T  C  A  *  H  G  G  *  A  H  P  S  E  S  C  A  K  Y  T  A  G  S  L  W  T  P  S  K  C  Q :   S  H  F  S  S  G  K  H  R  I  T  R  C  P  I  I  S  S  V  L  H  G  R  I  A  R  S  N  R  K  F  *  S  V  S  I  T  W  *  R  F  S  W  K   : N  L  Q  G  K  I  R  E  W  S  L  H  C  C  K  V  T  K  C  V  Q  K  I  L  *  P  E  P  Q  T  A  I  G  L  T  V  K  V  S  S  P  P  F  S  *  P  S  G  S  L  H  *  W  W  S  T  R  *  F  N  C  P  P  N  F  S  H  L  *  I  Y  L  *  W  K  L  S  C  S  S  I  R :   K  *  F  K  K  D  P  Q  V  V  R  Q  V  V  S  A  D  W  C  C  Q  G  S  A  L  S  S  H  R  C  N  S  F  F  I  *  Q  P  L  E  D  E  *  H  I  A  *  *  A  *  H  G  K  T  K  *  F  W  D  V  H  S  Y  G  R  K  *  K   : G  K  R  R  *  R  H  L  L  :  A  Y  D  K  E  R  G  R  C  L  *  L  W  F  H  I  T  G  I  A  G  W  P  F  C  Q  W  K  R  R  S  I  F  D  E  *  N   : G  I  L  W  *  P  R  W  S  T  Q  N  C  G  S  N  S  A  S  H  *  L  Q  *  V  F  V  N  C  N  I  H  H  Q  Q  M  H  I  Y  R  V  V  N  S  A  L  V  *  G  C  S  V  E  P  T  I  C  C  S  S  S  S  Y  S  *  C  R  S  E  I  R  C  Y  F  T  D  I  R  S  P  S  A  Y  L  I  W  S  E  H  R  R  M  L  A  D  *  F  H  D  G  C  G  S  T  N  R  *  A  S  L  K  A  Q  V  *  A  T  G  P  P  I  F  C  I  R  S  V  N  F  V  D  S  S  N  R  *  C  F  H  I  A  *  T  L  I  L  N  S  I  I  A  T  R  Q  L  K  S  Y  K  S  R  F  R  Q  D  N  T  Y  V  W  C  N  G  N  K  K  K  K  I  *  *  T  S  N  :  N  N  N  *  *  K  N  *  M  K  F  I  S  *  S  T  T  S  K  T  N  *  I  *  N  E  E  </first_frame>
            <second_frame>  R  I  T  G  K  E  I  A  L  L  T  G  V  I  G  G  I  V  I  V  V  V  F  L  L  V  V  L  L  I  F  R  R  K  R  H  A  H  N  M  V  D  K  H  I  P  P  K  V  V  Q  S  T  Q  P  V  P  S  G  L  L  V  N  A   : R  V  I  S  Q  V  A  N  T  G  S  Q  G  A  P  S  Y  R  V  F  S  M  E  E  L  L  E  A  T  E  N  F  D  Q  S  A  L  L  G  E  G  S  V  G  K  :  I  Y  K  G  R  L  E  N  G  A  Y  I  A  V  R  S  L  N  V  Y  R  R  Y  S  N  R  N  L  K  L  R  L  D  L  L  S  K  F  R  H  P  H  L  V  S  L  L  G  H  C  I  D  G  G  A  P  D  D  S  T  V  P  R  I  F  L  I  Y  E  Y  I  S  N  G  N  F  R  A  H  L  S   : E  N  S  S  R  K  I  L  K  W  L  D  R  L  S  V  L  I  G  V  A  K  A  V  H  F  L  H  T  G  V  I  P  S  S  F  S  N  R  L  K  T  S  N  I  L  L  D  E  H  N  M  A  K  L  S  D  F  G  M  S  I  L  M  E  E  S  E  K  :  A  K  G  D  D  V  T  S  W :   H  M  T  K  K  E  D  D  V  Y  N  F  G  F  I  L  L  E  S  L  V  G  P  S  V  S  G  K  G  E  A  F  L  M  N  E  M  :  A  S  F  G  S  Q  D  G  R  R  R  I  V  D  P  I  V  L  A  T  S  S  N  E  S  L  S  I  V  I  S  I  T  N  K  C  I  S  T  E  S  S  T  R  P  S  F  E  D  V  L  W  N  L  Q  Y  A  A  Q  V  Q  A  T  A  D  A  D  Q  K  S  D  A  T  S  P  T  *  G  V  Q  A  H  T  *  F  G  Q  S  I  G  E  C  *  L  I  N  F  M  M  V  V  G  V  P  T  G  R  L  A  L  K  L  K  F  K  L  Q  V  P  L  Y  F  V  S  E  V  *  I  L  L  I  L  V  I  G  D  V  S  I  *  H  R  P  S  F  *  I  P  S  L  Q  L  G  N  *  S  R  T  N  L  D  S  D  K  T  I  H  M  F  G  A  T  E  I  K  R  R  R  Y  D  R  H  Q  I :   T  I  I  N  K  K  I  K  *  N  L  Y  L  N  L  L  P  Q  K  L  T  K  Y  K  T  K  K </second_frame>
            <third_frame>   E  L  Q  E  K  K  *  H  Y  *  Q  V  S  L  G  G  L  *  L  L  W  C  F  C  *  L  C  F  S  S  S  V  E  N  D  M  R  I  T  W  W  I  S  T  S  L  R  K  L  C  K  V  H  S  R  F  P  L  D  S  *  *  M  P  :  E  S  F  L  K  W  Q  T  Q  D  H  K  V  P  H  H  I  E  C  S  P  W  K  N  C  *  K  Q  Q  K  I  L  I  S  Q  H  Y  L  V  K  V  Q  L  E  K :   F  T  R  E  D  *  R  M  E  L  T  L  L  *  G  H  *  M  C  T  E  D  T  L  T  G  T  S  N  C  D  W  T  Y  C  Q  S  F  V  T  P  I  *  L  A  F  W  V  T  A  L  M  V  E  H  Q  M  I  Q  L  S  P  E  F  F  S  F  M  N  I  S  L  M  E  T  F  V  L  I  Y  Q  :  K  I  V  Q  E  R  S  S  S  G  *  T  G  C  Q  C  *  L  V  L  P  R  Q  C  T  F  F  T  Q  V  *  F  L  L  H  L  A  T  A  *  R  R  V  T  Y  C  L  M  S  I  T  W  Q  N  *  V  I  L  G  C  P  F  L  W  K  K  V  K  R :   Q  K  E  M  T  S  P  P   : G  I  *  Q  R  K  R  T  M  F  I  T  L  V  S  Y  Y  W  N  R  W  L  A  L  L  S  V  E  K  E  K  H  F  *  *  M  K  W :   H  P  L  V  A  K  M  V  D  A  E  L  W  I  Q  *  C  *  P  L  A  P  M  S  L  C  Q  L  *  Y  P  S  P  T  N  A  Y  L  Q  S  R  Q  L  G  P  R  L  R  M  F  C  G  T  Y  N  M  L  L  K  F  K  L  Q  L  M  Q  I  R  N  P  M  L  L  H  R  H  K  E  S  K  R  I  L  N  L  V  R  A  *  E  N  V  S  *  L  I  S  *  W  L  W  E  Y  Q  P  V  G  *  P  *  S  S  S  L  S  Y  R  S  P  Y  I  L  Y  Q  K  C  K  F  C  *  F  *  *  *  V  M  F  P  Y  S  I  D  P  H  F  K  F  H  H  C  N  *  A  I  E  V  V  Q  I  *  I  Q  T  R  Q  Y  I  C  L  V  Q  R  K  *  K  E  E  D  M  I  D  I  K   : *  Q  *  L  I  K  K  L  N  E  I  Y  I  L  I  Y  Y  L  K  N  *  L  N  I  K  R  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0042D07.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73274" stop="73466"/>
                    <exon start="73564" stop="73697"/>
                    <exon start="74238" stop="74481"/>
                    <exon start="74910" stop="75115"/>
                    <exon start="75204" stop="75229"/>
                    <exon start="75389" stop="75500"/>
                    <exon start="75838" stop="76068"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1143</number_coding_nucleotides>
                  <number_encoded_amino_acids>381</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RITGKEIALLTGVIGGIVIVVVFLLVVLLIFRRKRHAHNMVDKHIPPKVVQSTQPVPSGLLVNARVISQVANTGSQGAPSYRVFSMEELLEATENFDQSALLGEGSVGKIYKGRLENGAYIAVRSLNVYRRYSNRNLKLRLDLLSKFRHPHLVSLLGHCIDGGAPDDSTVPRIFLIYEYISNGNFRAHLSENSSRKILKWLDRLSVLIGVAKAVHFLHTGVIPSSFSNRLKTSNILLDEHNMAKLSDFGMSILMEESEKAKGDDVTSWHMTKKEDDVYNFGFILLESLVGPSVSGKGEAFLMNEMASFGSQDGRRRIVDPIVLATSSNESLSIVISITNKCISTESSTRPSFEDVLWNLQYAAQVQATADADQKSDATSPT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="75255" e_stop="75500"/>
            <exon e_start="75838" e_stop="76388"/>
            <exon e_start="77240" e_stop="77321"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.996"/>
          <exon-only e_score="0.573"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="75255" e_stop="75500" e_length="246"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.990">
            <gDNA_intron_boundary i_start="75501" i_stop="75837" i_length="337"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="75838" e_stop="76388" e_length="551"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="76389" i_stop="77239" i_length="851"/>
          </intron>
          <exon e_serial="3" e_score="0.573">
            <gDNA_exon_boundary e_start="77240" e_stop="77321" e_length="82"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75255" stop="75500"/>
              <exon start="75838" stop="76253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75925" stop="76388"/>
              <exon start="77240" stop="77321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724024" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGTAACGTGCCTTAGCAACTTTCTTATGCTACACCAACTGGCATTCTATTTCAAAAATGTGAACTAGAGTCATATATATCATCTACCATAGCTGTTTGCAGGATATAATCAGTGATATTTTATTCTCGTGTAGGCATATGACAAAGAAAGAGGACGATGTTTATAACTTTGGTTTCATATTACTGGAATCGCTGGTTGGCCCTTCTGTCAGTGGAAAAGGAGAAGCATTTTTGATGAATGAAATG : GCATCCTTTGGTAGCCAAGATGGTCGACGCAGAATTGTGGATCCAATAGTGCTAGCCACTAGCTCCAATGAGTCTTTGTCAATTGTAATATCCATCACCAACAAATGCATATCTACAGAGTCGTCAACTCGGCCCTCGTTTGAGGATGTTCTGTGGAACCTACAATATGCTGCTCAAGTTCAAGCTACAGCTGATGCAGATCAGAAATCCGATGCTACTTCACCGACATAAGGAGTCCAAGCGCATACTTAATTTGGTCAGAGCATAGGAGAATGTTAGCTGATTAATTTCATGATGGTTGTGGGAGTACCAACCGGTAGGCTAGCCTTAAAGCTCAAGTTTAAGCTACAGGTCCCCCTATATTTTGTATCAGAAGTGTAAATTTTGTTGATTCTAGTAATAGGTGATGTTTCCATATAGCATAGACCCTCATTTTAAATTCCATCATTGCAACTAGGCAATTGAAGTCGTACAAATCTAGATTCAGACAAGACAATACATATGTTTGGTGCAACGGAAATAAAAAGAAGAAGATATGATAGACATCAAAT : AACAATAATTAATAAAAAAATTAAATGAAATTTATATCTTAATCTACTACCTCAAAAACTAACTAAATATAAAACGAAGAAA</gDNA_template>
            <first_frame> L  *  R  A  L  A  T  F  L  C  Y  T  N  W  H  S  I  S  K  M  *  T  R  V  I  Y  I  I  Y  H  S  C  L  Q  D  I  I  S  D  I  L  F  S  C  R  H  M  T  K  K  E  D  D  V  Y  N  F  G  F  I  L  L  E  S  L  V  G  P  S  V  S  G  K  G  E  A  F  L  M  N  E  M  :  A  S  F  G  S  Q  D  G  R  R  R  I  V  D  P  I  V  L  A  T  S  S  N  E  S  L  S  I  V  I  S  I  T  N  K  C  I  S  T  E  S  S  T  R  P  S  F  E  D  V  L  W  N  L  Q  Y  A  A  Q  V  Q  A  T  A  D  A  D  Q  K  S  D  A  T  S  P  T  *  G  V  Q  A  H  T  *  F  G  Q  S  I  G  E  C  *  L  I  N  F  M  M  V  V  G  V  P  T  G  R  L  A  L  K  L  K  F  K  L  Q  V  P  L  Y  F  V  S  E  V  *  I  L  L  I  L  V  I  G  D  V  S  I  *  H  R  P  S  F  *  I  P  S  L  Q  L  G  N  *  S  R  T  N  L  D  S  D  K  T  I  H  M  F  G  A  T  E  I  K  R  R  R  Y  D  R  H  Q  I :   T  I  I  N  K  K  I  K  *  N  L  Y  L  N  L  L  P  Q  K  L  T  K  Y  K  T  K  K </first_frame>
            <second_frame>  C  N  V  P  *  Q  L  S  Y  A  T  P  T  G  I  L  F  Q  K  C  E  L  E  S  Y  I  S  S  T  I  A  V  C  R  I  *  S  V  I  F  Y  S  R  V  G  I  *  Q  R  K  R  T  M  F  I  T  L  V  S  Y  Y  W  N  R  W  L  A  L  L  S  V  E  K  E  K  H  F  *  *  M  K  W :   H  P  L  V  A  K  M  V  D  A  E  L  W  I  Q  *  C  *  P  L  A  P  M  S  L  C  Q  L  *  Y  P  S  P  T  N  A  Y  L  Q  S  R  Q  L  G  P  R  L  R  M  F  C  G  T  Y  N  M  L  L  K  F  K  L  Q  L  M  Q  I  R  N  P  M  L  L  H  R  H  K  E  S  K  R  I  L  N  L  V  R  A  *  E  N  V  S  *  L  I  S  *  W  L  W  E  Y  Q  P  V  G  *  P  *  S  S  S  L  S  Y  R  S  P  Y  I  L  Y  Q  K  C  K  F  C  *  F  *  *  *  V  M  F  P  Y  S  I  D  P  H  F  K  F  H  H  C  N  *  A  I  E  V  V  Q  I  *  I  Q  T  R  Q  Y  I  C  L  V  Q  R  K  *  K  E  E  D  M  I  D  I  K   : *  Q  *  L  I  K  K  L  N  E  I  Y  I  L  I  Y  Y  L  K  N  *  L  N  I  K  R  R   </second_frame>
            <third_frame>   V  T  C  L  S  N  F  L  M  L  H  Q  L  A  F  Y  F  K  N  V  N  *  S  H  I  Y  H  L  P  *  L  F  A  G  Y  N  Q  *  Y  F  I  L  V  *  A  Y  D  K  E  R  G  R  C  L  *  L  W  F  H  I  T  G  I  A  G  W  P  F  C  Q  W  K  R  R  S  I  F  D  E  *  N   : G  I  L  W  *  P  R  W  S  T  Q  N  C  G  S  N  S  A  S  H  *  L  Q  *  V  F  V  N  C  N  I  H  H  Q  Q  M  H  I  Y  R  V  V  N  S  A  L  V  *  G  C  S  V  E  P  T  I  C  C  S  S  S  S  Y  S  *  C  R  S  E  I  R  C  Y  F  T  D  I  R  S  P  S  A  Y  L  I  W  S  E  H  R  R  M  L  A  D  *  F  H  D  G  C  G  S  T  N  R  *  A  S  L  K  A  Q  V  *  A  T  G  P  P  I  F  C  I  R  S  V  N  F  V  D  S  S  N  R  *  C  F  H  I  A  *  T  L  I  L  N  S  I  I  A  T  R  Q  L  K  S  Y  K  S  R  F  R  Q  D  N  T  Y  V  W  C  N  G  N  K  K  K  K  I  *  *  T  S  N  :  N  N  N  *  *  K  N  *  M  K  F  I  S  *  S  T  T  S  K  T  N  *  I  *  N  E  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0042D07.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75318" stop="75500"/>
                    <exon start="75838" stop="76068"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>411</number_coding_nucleotides>
                  <number_encoded_amino_acids>137</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TRVIYIIYHSCLQDIISDILFSCRHMTKKEDDVYNFGFILLESLVGPSVSGKGEAFLMNEMASFGSQDGRRRIVDPIVLATSSNESLSIVISITNKCISTESSTRPSFEDVLWNLQYAAQVQATADADQKSDATSPT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="78084" PGL_stop="79884"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78084" e_stop="78127"/>
            <exon e_start="78511" e_stop="79271"/>
            <exon e_start="79579" e_stop="79884"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.685" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="78084" e_stop="78127" e_length="44"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.000">
            <gDNA_intron_boundary i_start="78128" i_stop="78510" i_length="383"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="78511" e_stop="79271" e_length="761"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="0.685">
            <gDNA_intron_boundary i_start="79272" i_stop="79578" i_length="307"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="79579" e_stop="79884" e_length="306"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78084" stop="78127"/>
              <exon start="78511" stop="78879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737229" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78097" stop="78127"/>
              <exon start="78511" stop="79248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78098" stop="78127"/>
              <exon start="78511" stop="79017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78908" stop="79271"/>
              <exon start="79579" stop="79884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737515" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGCTGTGTGTCGGCAACCACTGCAATGTTCTACTCTCCTCCTAA : CCATTGCAGGCTTTGTTAGAATTCCATTTTACATTTGTGTATCGGAAATCATGGTTTCGGGACTGAGGGCGAAAACTAGGAAAGGTCCCTCAGTTCAAGTAGATTATCTAATTCATATTCAGGAGATCAAACCTTGGCCTCCCTCGCAGTCATTGAAGTCGGTTCGTGCTATTGTGATCCAATGGGAAAATGGAGATAGGAATGGTTCTACTAGTCAAGTTGTCCCATTTTTAGGCTCTGGTGTTGGTGATGGAAGAATTGAGTTCAATGAGTCCTTTAAACTACCTGTGACACTACTGAAGGAAATTTCTAATAAAGGGGGTGATGGAAACAGTTTTCAAAAAAATTGCATGGAGTTCAACTTGTATGAACCCCGACGTGACAAGACAGTCAAAGGTCAACCCTTAGGAACTGCTGTTATCAATTTGGCTGAATATGCTGTTATCAAGGAGGGTTTGAATGTAAGTGCCCCTATTAATTGCACAAGGGCTTATAGGAACACTACACAGGCCCTTCTCTTCCTGAAAATCCAGCCATTTGAGAAAGGTCGCGTCAGCTCCTCATCTTCAAGTCACATTTTAACGAGGGAAGTGTCAATAGACCGTAATGGTGTTGAATCTCTGTCTACATTGACAAGTGAAGAATGTGCTGAGGAAGCTGAGACTGCCTCATTTACCGATGATGATGGTTCCTCGCACTCATCAGTTGCTGTTTCTTCTTCAGCTAATGGATCGAACTGTGGTTCACTACCACAAGGAGAG : GATGAAGCTGAGGGAGTGAAAAGTAATCCTGGACAACATGAAGATGAACATCTCCTACATTCAAAGAAAAAATCTGTAGATTTGGATGAGAAGCAAGTGGTGAAATCATTATCTGATTTGAAGGGAAGTCCATCTCCCTCTTCAACTGATTTGTCTTCTGACTTGGCATGGCTCTCAAGGAAAATAGGTGGTAGTGGTAGCAATAAATTCTCAACCTCAAGTGAGAATGAAATAACTGAAAACTCTCAGAATCCGCGGGTGATGACCAAACATGTTGAACCAGAAAGAATACTGGCTAACAGTGAA</gDNA_template>
            <first_frame> G  C  V  S  A  T  T  A  M  F  Y  S  P  P  N :   H  C  R  L  C  *  N  S  I  L  H  L  C  I  G  N  H  G  F  G  T  E  G  E  N  *  E  R  S  L  S  S  S  R  L  S  N  S  Y  S  G  D  Q  T  L  A  S  L  A  V  I  E  V  G  S  C  Y  C  D  P  M  G  K  W  R  *  E  W  F  Y  *  S  S  C  P  I  F  R  L  W  C  W  *  W  K  N  *  V  Q  *  V  L  *  T  T  C  D  T  T  E  G  N  F  *  *  R  G  *  W  K  Q  F  S  K  K  L  H  G  V  Q  L  V  *  T  P  T  *  Q  D  S  Q  R  S  T  L  R  N  C  C  Y  Q  F  G  *  I  C  C  Y  Q  G  G  F  E  C  K  C  P  Y  *  L  H  K  G  L  *  E  H  Y  T  G  P  S  L  P  E  N  P  A  I  *  E  R  S  R  Q  L  L  I  F  K  S  H  F  N  E  G  S  V  N  R  P  *  W  C  *  I  S  V  Y  I  D  K  *  R  M  C  *  G  S  *  D  C  L  I  Y  R  *  *  W  F  L  A  L  I  S  C  C  F  F  F  S  *  W  I  E  L  W  F  T  T  T  R  R   : G  *  S  *  G  S  E  K  *  S  W  T  T  *  R  *  T  S  P  T  F  K  E  K  I  C  R  F  G  *  E  A  S  G  E  I  I  I  *  F  E  G  K  S  I  S  L  F  N  *  F  V  F  *  L  G  M  A  L  K  E  N  R  W  *  W  *  Q  *  I  L  N  L  K  *  E  *  N  N  *  K  L  S  E  S  A  G  D  D  Q  T  C  *  T  R  K  N  T  G  *  Q  *  </first_frame>
            <second_frame>  A  V  C  R  Q  P  L  Q  C  S  T  L  L  L   : T  I  A  G  F  V  R  I  P  F  Y  I  C  V  S  E  I  M  V  S  G  L  R  A  K  T  R  K  G  P  S  V  Q  V  D  Y  L  I  H  I  Q  E  I  K  P  W  P  P  S  Q  S  L  K  S  V  R  A  I  V  I  Q  W  E  N  G  D  R  N  G  S  T  S  Q  V  V  P  F  L  G  S  G  V  G  D  G  R  I  E  F  N  E  S  F  K  L  P  V  T  L  L  K  E  I  S  N  K  G  G  D  G  N  S  F  Q  K  N  C  M  E  F  N  L  Y  E  P  R  R  D  K  T  V  K  G  Q  P  L  G  T  A  V  I  N  L  A  E  Y  A  V  I  K  E  G  L  N  V  S  A  P  I  N  C  T  R  A  Y  R  N  T  T  Q  A  L  L  F  L  K  I  Q  P  F  E  K  G  R  V  S  S  S  S  S  S  H  I  L  T  R  E  V  S  I  D  R  N  G  V  E  S  L  S  T  L  T  S  E  E  C  A  E  E  A  E  T  A  S  F  T  D  D  D  G  S  S  H  S  S  V  A  V  S  S  S  A  N  G  S  N  C  G  S  L  P  Q  G  E  :  D  E  A  E  G  V  K  S  N  P  G  Q  H  E  D  E  H  L  L  H  S  K  K  K  S  V  D  L  D  E  K  Q  V  V  K  S  L  S  D  L  K  G  S  P  S  P  S  S  T  D  L  S  S  D  L  A  W  L  S  R  K  I  G  G  S  G  S  N  K  F  S  T  S  S  E  N  E  I  T  E  N  S  Q  N  P  R  V  M  T  K  H  V  E  P  E  R  I  L  A  N  S  E </second_frame>
            <third_frame>   L  C  V  G  N  H  C  N  V  L  L  S  S  *  :  P  L  Q  A  L  L  E  F  H  F  T  F  V  Y  R  K  S  W  F  R  D  *  G  R  K  L  G  K  V  P  Q  F  K  *  I  I  *  F  I  F  R  R  S  N  L  G  L  P  R  S  H  *  S  R  F  V  L  L  *  S  N  G  K  M  E  I  G  M  V  L  L  V  K  L  S  H  F  *  A  L  V  L  V  M  E  E  L  S  S  M  S  P  L  N  Y  L  *  H  Y  *  R  K  F  L  I  K  G  V  M  E  T  V  F  K  K  I  A  W  S  S  T  C  M  N  P  D  V  T  R  Q  S  K  V  N  P  *  E  L  L  L  S  I  W  L  N  M  L  L  S  R  R  V  *  M  *  V  P  L  L  I  A  Q  G  L  I  G  T  L  H  R  P  F  S  S  *  K  S  S  H  L  R  K  V  A  S  A  P  H  L  Q  V  T  F  *  R  G  K  C  Q  *  T  V  M  V  L  N  L  C  L  H  *  Q  V  K  N  V  L  R  K  L  R  L  P  H  L  P  M  M  M  V  P  R  T  H  Q  L  L  F  L  L  Q  L  M  D  R  T  V  V  H  Y  H  K  E  R :   M  K  L  R  E  *  K  V  I  L  D  N  M  K  M  N  I  S  Y  I  Q  R  K  N  L  *  I  W  M  R  S  K  W  *  N  H  Y  L  I  *  R  E  V  H  L  P  L  Q  L  I  C  L  L  T  W  H  G  S  Q  G  K  *  V  V  V  V  A  I  N  S  Q  P  Q  V  R  M  K  *  L  K  T  L  R  I  R  G  *  *  P  N  M  L  N  Q  K  E  Y  W  L  T  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0042D07.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78085" stop="78127"/>
                    <exon start="78511" stop="79271"/>
                    <exon start="79579" stop="79884"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1110</number_coding_nucleotides>
                  <number_encoded_amino_acids>370</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AVCRQPLQCSTLLLTIAGFVRIPFYICVSEIMVSGLRAKTRKGPSVQVDYLIHIQEIKPWPPSQSLKSVRAIVIQWENGDRNGSTSQVVPFLGSGVGDGRIEFNESFKLPVTLLKEISNKGGDGNSFQKNCMEFNLYEPRRDKTVKGQPLGTAVINLAEYAVIKEGLNVSAPINCTRAYRNTTQALLFLKIQPFEKGRVSSSSSSHILTREVSIDRNGVESLSTLTSEECAEEAETASFTDDDGSSHSSVAVSSSANGSNCGSLPQGEDEAEGVKSNPGQHEDEHLLHSKKKSVDLDEKQVVKSLSDLKGSPSPSSTDLSSDLAWLSRKIGGSGSNKFSTSSENEITENSQNPRVMTKHVEPERILANSE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="80233" PGL_stop="81653"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80233" e_stop="80951"/>
            <exon e_start="81564" e_stop="81653"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.952" e_score="0.992"/>
          <exon-only e_score="0.956"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="80233" e_stop="80951" e_length="719"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.952">
            <gDNA_intron_boundary i_start="80952" i_stop="81563" i_length="612"/>
          </intron>
          <exon e_serial="2" e_score="0.956">
            <gDNA_exon_boundary e_start="81564" e_stop="81653" e_length="90"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80233" stop="80951"/>
              <exon start="81564" stop="81653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80233" stop="80762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331052" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGAATGACTCAGAAAAAAGTGACGTAAATTCTACTGACTCTGAGAATGCTTTCACTCCTCTTGGAAATAGGCATGAAGATGCGAGAGCTGTTGTTACCAAGAATGGTTCTTGTGAGGGTCAAAACAGTGAGAATTATCAAGAGAGGGAGAACTATCAGGAAAATGAACAAGTACAAGAAATAGTCGAAGAGGAAGAAAGTGAGGATGCTATGAAGAATGTCTCAGAAGAAAGTGATGTAAATTCTACTGACACGGACAGTTATGGAGCAAAGAGTAGTATCCTGAATAATGAGAGATTAAAGCATGTAAAGTCAGTTAGGTCATCAGCAGAACCTAATAGAGTAAGAGGGTCTGTCAGGGGCAATCAACTTTTAGCACAAGATAAATTGATTAGTACTCAAGATTTAGGAAATGAGTGGAAAAATCGAAATGCGCATTCAACAATTCTTTTGGAAAACAAACTCCATAAGTTGGAGCAAAGAGTAAAGATGGCAGAAGGAGAATTGAGAGAAGCTGCTGCAATTGAAGTTGGCCTCTATTCGGTTGTTGCAGAGCATGGGAGTTCCACAAATAAGGTACATGCTCCTGCAAGACGTCTGTCGAGGTTCTATTTCCATGCCTGTAAAGATGACTCTCTATTGAAAAGGGGATCTGCTGCTAAAAGTGCTGTCTCTGGATTAATTTTGGTTGCAAGAGCATGTGGAAATGATGTTCCAAG : GTTAACTTTCTGGTTATCAAATTCGGTGGTGCTGAGAGCAACTATAAGCAAATTCCAGCGGCAGCTGTGTTTGCCCCGTACTACTGAAAC</gDNA_template>
            <first_frame> K  N  D  S  E  K  S  D  V  N  S  T  D  S  E  N  A  F  T  P  L  G  N  R  H  E  D  A  R  A  V  V  T  K  N  G  S  C  E  G  Q  N  S  E  N  Y  Q  E  R  E  N  Y  Q  E  N  E  Q  V  Q  E  I  V  E  E  E  E  S  E  D  A  M  K  N  V  S  E  E  S  D  V  N  S  T  D  T  D  S  Y  G  A  K  S  S  I  L  N  N  E  R  L  K  H  V  K  S  V  R  S  S  A  E  P  N  R  V  R  G  S  V  R  G  N  Q  L  L  A  Q  D  K  L  I  S  T  Q  D  L  G  N  E  W  K  N  R  N  A  H  S  T  I  L  L  E  N  K  L  H  K  L  E  Q  R  V  K  M  A  E  G  E  L  R  E  A  A  A  I  E  V  G  L  Y  S  V  V  A  E  H  G  S  S  T  N  K  V  H  A  P  A  R  R  L  S  R  F  Y  F  H  A  C  K  D  D  S  L  L  K  R  G  S  A  A  K  S  A  V  S  G  L  I  L  V  A  R  A  C  G  N  D  V  P  R :   L  T  F  W  L  S  N  S  V  V  L  R  A  T  I  S  K  F  Q  R  Q  L  C  L  P  R  T  T  E   </first_frame>
            <second_frame>  R  M  T  Q  K  K  V  T  *  I  L  L  T  L  R  M  L  S  L  L  L  E  I  G  M  K  M  R  E  L  L  L  P  R  M  V  L  V  R  V  K  T  V  R  I  I  K  R  G  R  T  I  R  K  M  N  K  Y  K  K  *  S  K  R  K  K  V  R  M  L  *  R  M  S  Q  K  K  V  M  *  I  L  L  T  R  T  V  M  E  Q  R  V  V  S  *  I  M  R  D  *  S  M  *  S  Q  L  G  H  Q  Q  N  L  I  E  *  E  G  L  S  G  A  I  N  F  *  H  K  I  N  *  L  V  L  K  I  *  E  M  S  G  K  I  E  M  R  I  Q  Q  F  F  W  K  T  N  S  I  S  W  S  K  E  *  R  W  Q  K  E  N  *  E  K  L  L  Q  L  K  L  A  S  I  R  L  L  Q  S  M  G  V  P  Q  I  R  Y  M  L  L  Q  D  V  C  R  G  S  I  S  M  P  V  K  M  T  L  Y  *  K  G  D  L  L  L  K  V  L  S  L  D  *  F  W  L  Q  E  H  V  E  M  M  F  Q   : G  *  L  S  G  Y  Q  I  R  W  C  *  E  Q  L  *  A  N  S  S  G  S  C  V  C  P  V  L  L  K  </second_frame>
            <third_frame>   E  *  L  R  K  K  *  R  K  F  Y  *  L  *  E  C  F  H  S  S  W  K  *  A  *  R  C  E  S  C  C  Y  Q  E  W  F  L  *  G  S  K  Q  *  E  L  S  R  E  G  E  L  S  G  K  *  T  S  T  R  N  S  R  R  G  R  K  *  G  C  Y  E  E  C  L  R  R  K  *  C  K  F  Y  *  H  G  Q  L  W  S  K  E  *  Y  P  E  *  *  E  I  K  A  C  K  V  S  *  V  I  S  R  T  *  *  S  K  R  V  C  Q  G  Q  S  T  F  S  T  R  *  I  D  *  Y  S  R  F  R  K  *  V  E  K  S  K  C  A  F  N  N  S  F  G  K  Q  T  P  *  V  G  A  K  S  K  D  G  R  R  R  I  E  R  S  C  C  N  *  S  W  P  L  F  G  C  C  R  A  W  E  F  H  K  *  G  T  C  S  C  K  T  S  V  E  V  L  F  P  C  L  *  R  *  L  S  I  E  K  G  I  C  C  *  K  C  C  L  W  I  N  F  G  C  K  S  M  W  K  *  C  S  K  :  V  N  F  L  V  I  K  F  G  G  A  E  S  N  Y  K  Q  I  P  A  A  A  V  F  A  P  Y  Y  *  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0042D07.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80233" stop="80951"/>
                    <exon start="81564" stop="81651"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>807</number_coding_nucleotides>
                  <number_encoded_amino_acids>269</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNDSEKSDVNSTDSENAFTPLGNRHEDARAVVTKNGSCEGQNSENYQERENYQENEQVQEIVEEEESEDAMKNVSEESDVNSTDTDSYGAKSSILNNERLKHVKSVRSSAEPNRVRGSVRGNQLLAQDKLISTQDLGNEWKNRNAHSTILLENKLHKLEQRVKMAEGELREAAAIEVGLYSVVAEHGSSTNKVHAPARRLSRFYFHACKDDSLLKRGSAAKSAVSGLILVARACGNDVPRLTFWLSNSVVLRATISKFQRQLCLPRTTE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="83297" PGL_stop="84246"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83297" e_stop="83377"/>
            <exon e_start="83461" e_stop="83571"/>
            <exon e_start="83750" e_stop="84246"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.986" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="83297" e_stop="83377" e_length="81"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="83378" i_stop="83460" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="83461" e_stop="83571" e_length="111"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.986">
            <gDNA_intron_boundary i_start="83572" i_stop="83749" i_length="178"/>
          </intron>
          <exon e_serial="3" e_score="0.992">
            <gDNA_exon_boundary e_start="83750" e_stop="84246" e_length="497"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83297" stop="83377"/>
              <exon start="83461" stop="83571"/>
              <exon start="83750" stop="84246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321509" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTTTCTACCTTCTAAATGCATTGAGTGATCTTATGATGCTTCCAAAGGATATGCTTTTAAGCAGGACAATGAGAAAAGAG : GTATGTCCGGCACTTGGTCCTTTGCTAATAAGAAGGGTTCTTAATATATTTGTTCCAGATGAGTTTTGTTGTGATTCAATACCTGAAGCGGTATTTGAAGTTCTCTCAGAG : GAACCTTCTGAGGCTGAGGGTGATTCTGTTACAAACTATCCGTGCACAGCAGCTCCTGTGGCTTATATGCCACCTCCAATAGCTTCAGTAGCTGGTATGTTGGGCGATGGGTATAGCTATTCTATGTTGACACGAAGTGCATCTTCAGTGCTCAAAAAGTCATACACAAGTGATGAGGAACTTGAGCTATTGGATTCACCGTTGAATTTTATCATTAGTGATGGCACTGAAGCTTCACATTCTTTAGTAAAACAGAGTTCCATGCCAAAAAATAGTGGAAGGCAGAGGTACCAACTCCTTCGGGAGGTTTGGATTAACAGTGAGTAAAATGAGTAGTTGTGGTGTTAACAGATTTCTTGGTTTTCATCTAAAGGAAGATAGGGATCGATGATGAGAGTATGATTTGTGGATATGAGAAGCACTTGTTATGCATCTTCACGTGTAGATATTGTAGGAGTTAGGTGTCTGTAGAAATATTTGATAAACTTGAATGGGAA</gDNA_template>
            <first_frame> S  F  Y  L  L  N  A  L  S  D  L  M  M  L  P  K  D  M  L  L  S  R  T  M  R  K  E  :  V  C  P  A  L  G  P  L  L  I  R  R  V  L  N  I  F  V  P  D  E  F  C  C  D  S  I  P  E  A  V  F  E  V  L  S  E  :  E  P  S  E  A  E  G  D  S  V  T  N  Y  P  C  T  A  A  P  V  A  Y  M  P  P  P  I  A  S  V  A  G  M  L  G  D  G  Y  S  Y  S  M  L  T  R  S  A  S  S  V  L  K  K  S  Y  T  S  D  E  E  L  E  L  L  D  S  P  L  N  F  I  I  S  D  G  T  E  A  S  H  S  L  V  K  Q  S  S  M  P  K  N  S  G  R  Q  R  Y  Q  L  L  R  E  V  W  I  N  S  E  *  N  E  *  L  W  C  *  Q  I  S  W  F  S  S  K  G  R  *  G  S  M  M  R  V  *  F  V  D  M  R  S  T  C  Y  A  S  S  R  V  D  I  V  G  V  R  C  L  *  K  Y  L  I  N  L  N  G   </first_frame>
            <second_frame>  L  S  T  F  *  M  H  *  V  I  L  *  C  F  Q  R  I  C  F  *  A  G  Q  *  E  K  R :   Y  V  R  H  L  V  L  C  *  *  E  G  F  L  I  Y  L  F  Q  M  S  F  V  V  I  Q  Y  L  K  R  Y  L  K  F  S  Q  R :   N  L  L  R  L  R  V  I  L  L  Q  T  I  R  A  Q  Q  L  L  W  L  I  C  H  L  Q  *  L  Q  *  L  V  C  W  A  M  G  I  A  I  L  C  *  H  E  V  H  L  Q  C  S  K  S  H  T  Q  V  M  R  N  L  S  Y  W  I  H  R  *  I  L  S  L  V  M  A  L  K  L  H  I  L  *  *  N  R  V  P  C  Q  K  I  V  E  G  R  G  T  N  S  F  G  R  F  G  L  T  V  S  K  M  S  S  C  G  V  N  R  F  L  G  F  H  L  K  E  D  R  D  R  *  *  E  Y  D  L  W  I  *  E  A  L  V  M  H  L  H  V  *  I  L  *  E  L  G  V  C  R  N  I  *  *  T  *  M  G  </second_frame>
            <third_frame>   F  L  P  S  K  C  I  E  *  S  Y  D  A  S  K  G  Y  A  F  K  Q  D  N  E  K  R   : G  M  S  G  T  W  S  F  A  N  K  K  G  S  *  Y  I  C  S  R  *  V  L  L  *  F  N  T  *  S  G  I  *  S  S  L  R   : G  T  F  *  G  *  G  *  F  C  Y  K  L  S  V  H  S  S  S  C  G  L  Y  A  T  S  N  S  F  S  S  W  Y  V  G  R  W  V  *  L  F  Y  V  D  T  K  C  I  F  S  A  Q  K  V  I  H  K  *  *  G  T  *  A  I  G  F  T  V  E  F  Y  H  *  *  W  H  *  S  F  T  F  F  S  K  T  E  F  H  A  K  K  *  W  K  A  E  V  P  T  P  S  G  G  L  D  *  Q  *  V  K  *  V  V  V  V  L  T  D  F  L  V  F  I  *  R  K  I  G  I  D  D  E  S  M  I  C  G  Y  E  K  H  L  L  C  I  F  T  C  R  Y  C  R  S  *  V  S  V  E  I  F  D  K  L  E  W  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0042D07.2" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83297" stop="83377"/>
                    <exon start="83461" stop="83571"/>
                    <exon start="83750" stop="84076"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>516</number_coding_nucleotides>
                  <number_encoded_amino_acids>172</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFYLLNALSDLMMLPKDMLLSRTMRKEVCPALGPLLIRRVLNIFVPDEFCCDSIPEAVFEVLSEEPSEAEGDSVTNYPCTAAPVAYMPPPIASVAGMLGDGYSYSMLTRSASSVLKKSYTSDEELELLDSPLNFIISDGTEASHSLVKQSSMPKNSGRQRYQLLREVWINSE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="85851" PGL_stop="84517"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85851" e_stop="85575"/>
            <exon e_start="85507" e_stop="85367"/>
            <exon e_start="85275" e_stop="85090"/>
            <exon e_start="84713" e_stop="84517"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.931" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.871" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="85851" e_stop="85575" e_length="277"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.982">
            <gDNA_intron_boundary i_start="85574" i_stop="85508" i_length="67"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="85507" e_stop="85367" e_length="141"/>
          </exon>
          <intron i_serial="2" don_prob="0.931" acc_prob="0.965">
            <gDNA_intron_boundary i_start="85366" i_stop="85276" i_length="91"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="85275" e_stop="85090" e_length="186"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.871">
            <gDNA_intron_boundary i_start="85089" i_stop="84714" i_length="376"/>
          </intron>
          <exon e_serial="4" e_score="0.995">
            <gDNA_exon_boundary e_start="84713" e_stop="84517" e_length="197"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85851" stop="85575"/>
              <exon start="85507" stop="85367"/>
              <exon start="85275" stop="85090"/>
              <exon start="84713" stop="84517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85846" stop="85575"/>
              <exon start="85507" stop="85367"/>
              <exon start="85275" stop="85090"/>
              <exon start="84713" stop="84556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334148" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTCGGAGTTTCCGCCCGAACATTTCTTCGGGCTGCTTCAAGCAAGTCGGTTCGGGCCTACGGTTCAGCTGTTGCAGCTCACTTTGATTACGACAATGAGGAGGATATGGAGGAACCATCAGGATCAGTTCCACGCAGAGGAGTACAGTGGCTGATCATGGGTCATCCAATGACGCAGAGACACGTGTACGCCCAATGGCTGTCCAAACTTATGGACGTTCCATATATTTCCATGGGCTCTCTCGTACCTCAACAACTCAACCCTCACTATAACAAG : ATATCAAGTGTTGTGAATGAGGGAAAGCATGTTCCAGAAGAAGTTATTTTTGGTTTGTTATCAAAGAGGCTAGAAGAAGGTCATTGCAGAGGTGAAAACGGGTTCATTTTAGATGGAATTCCTCGTACAATGCTTCAGGCT : GAAATCCTTGACAAAGTTGTGGACATAGATTTAGTTCTGAATCTCAAGTGTTCCGTGTCAAAGAATGATAGAAGCAATGGAATTTATTCAACTGAAGATCAACTCCTTAAGAGAGGTAATTTAATGTCTTCAAGGGTCATGGATGGTGGTGCCTGGAAAGAGAAGCAATATGATCATGATGAACAG : ATCAAACCCTTAGAAGAATATTATAGGAAGCAGAAAAAGCTCCTCAATTATCAAGTAGCAGGAGGGCCTGCTGAAACTTGGCAAGGCCTTTTGGCTGCATTGCAACTTCAGCACATGATGAGTGCAGTTGGTTCAACACAGTTGACTGCAGGATGCTGATACGATTCTCCTGTGTTACTTAATTCTTTTTGCAAGTA</gDNA_template>
            <first_frame> P  R  S  F  R  P  N  I  S  S  G  C  F  K  Q  V  G  S  G  L  R  F  S  C  C  S  S  L  *  L  R  Q  *  G  G  Y  G  G  T  I  R  I  S  S  T  Q  R  S  T  V  A  D  H  G  S  S  N  D  A  E  T  R  V  R  P  M  A  V  Q  T  Y  G  R  S  I  Y  F  H  G  L  S  R  T  S  T  T  Q  P  S  L  *  Q   : D  I  K  C  C  E  *  G  K  A  C  S  R  R  S  Y  F  W  F  V  I  K  E  A  R  R  R  S  L  Q  R  *  K  R  V  H  F  R  W  N  S  S  Y  N  A  S  G   : *  N  P  *  Q  S  C  G  H  R  F  S  S  E  S  Q  V  F  R  V  K  E  *  *  K  Q  W  N  L  F  N  *  R  S  T  P  *  E  R  *  F  N  V  F  K  G  H  G  W  W  C  L  E  R  E  A  I  *  S  *  *  T   : D  Q  T  L  R  R  I  L  *  E  A  E  K  A  P  Q  L  S  S  S  R  R  A  C  *  N  L  A  R  P  F  G  C  I  A  T  S  A  H  D  E  C  S  W  F  N  T  V  D  C  R  M  L  I  R  F  S  C  V  T  *  F  F  L  Q  V </first_frame>
            <second_frame>  L  G  V  S  A  R  T  F  L  R  A  A  S  S  K  S  V  R  A  Y  G  S  A  V  A  A  H  F  D  Y  D  N  E  E  D  M  E  E  P  S  G  S  V  P  R  R  G  V  Q  W  L  I  M  G  H  P  M  T  Q  R  H  V  Y  A  Q  W  L  S  K  L  M  D  V  P  Y  I  S  M  G  S  L  V  P  Q  Q  L  N  P  H  Y  N  K  :  I  S  S  V  V  N  E  G  K  H  V  P  E  E  V  I  F  G  L  L  S  K  R  L  E  E  G  H  C  R  G  E  N  G  F  I  L  D  G  I  P  R  T  M  L  Q  A  :  E  I  L  D  K  V  V  D  I  D  L  V  L  N  L  K  C  S  V  S  K  N  D  R  S  N  G  I  Y  S  T  E  D  Q  L  L  K  R  G  N  L  M  S  S  R  V  M  D  G  G  A  W  K  E  K  Q  Y  D  H  D  E  Q  :  I  K  P  L  E  E  Y  Y  R  K  Q  K  K  L  L  N  Y  Q  V  A  G  G  P  A  E  T  W  Q  G  L  L  A  A  L  Q  L  Q  H  M  M  S  A  V  G  S  T  Q  L  T  A  G  C  *  Y  D  S  P  V  L  L  N  S  F  C  K   </second_frame>
            <third_frame>   S  E  F  P  P  E  H  F  F  G  L  L  Q  A  S  R  F  G  P  T  V  Q  L  L  Q  L  T  L  I  T  T  M  R  R  I  W  R  N  H  Q  D  Q  F  H  A  E  E  Y  S  G  *  S  W  V  I  Q  *  R  R  D  T  C  T  P  N  G  C  P  N  L  W  T  F  H  I  F  P  W  A  L  S  Y  L  N  N  S  T  L  T  I  T  R :   Y  Q  V  L  *  M  R  E  S  M  F  Q  K  K  L  F  L  V  C  Y  Q  R  G  *  K  K  V  I  A  E  V  K  T  G  S  F  *  M  E  F  L  V  Q  C  F  R  L :   K  S  L  T  K  L  W  T  *  I  *  F  *  I  S  S  V  P  C  Q  R  M  I  E  A  M  E  F  I  Q  L  K  I  N  S  L  R  E  V  I  *  C  L  Q  G  S  W  M  V  V  P  G  K  R  S  N  M  I  M  M  N  R :   S  N  P  *  K  N  I  I  G  S  R  K  S  S  S  I  I  K  *  Q  E  G  L  L  K  L  G  K  A  F  W  L  H  C  N  F  S  T  *  *  V  Q  L  V  Q  H  S  *  L  Q  D  A  D  T  I  L  L  C  Y  L  I  L  F  A  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0042D07.2" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85850" stop="85575"/>
                    <exon start="85507" stop="85367"/>
                    <exon start="85275" stop="85090"/>
                    <exon start="84713" stop="84555"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>759</number_coding_nucleotides>
                  <number_encoded_amino_acids>253</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LGVSARTFLRAASSKSVRAYGSAVAAHFDYDNEEDMEEPSGSVPRRGVQWLIMGHPMTQRHVYAQWLSKLMDVPYISMGSLVPQQLNPHYNKISSVVNEGKHVPEEVIFGLLSKRLEEGHCRGENGFILDGIPRTMLQAEILDKVVDIDLVLNLKCSVSKNDRSNGIYSTEDQLLKRGNLMSSRVMDGGAWKEKQYDHDEQIKPLEEYYRKQKKLLNYQVAGGPAETWQGLLAALQLQHMMSAVGSTQLTAGC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="87369" PGL_stop="91690"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87369" e_stop="88109"/>
            <exon e_start="88685" e_stop="88689"/>
            <exon e_start="91206" e_stop="91227"/>
            <exon e_start="91681" e_stop="91690"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.445" e_score="0.999"/>
          <exon-intron don_prob="0.999" acc_prob="0.850" e_score="0.400"/>
          <exon-intron don_prob="0.304" acc_prob="0.526" e_score="0.545"/>
          <exon-only e_score="0.700"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="87369" e_stop="88109" e_length="741"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.445">
            <gDNA_intron_boundary i_start="88110" i_stop="88684" i_length="575"/>
          </intron>
          <exon e_serial="2" e_score="0.400">
            <gDNA_exon_boundary e_start="88685" e_stop="88689" e_length="5"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.850">
            <gDNA_intron_boundary i_start="88690" i_stop="91205" i_length="2516"/>
          </intron>
          <exon e_serial="3" e_score="0.545">
            <gDNA_exon_boundary e_start="91206" e_stop="91227" e_length="22"/>
          </exon>
          <intron i_serial="3" don_prob="0.304" acc_prob="0.526">
            <gDNA_intron_boundary i_start="91228" i_stop="91680" i_length="453"/>
          </intron>
          <exon e_serial="4" e_score="0.700">
            <gDNA_exon_boundary e_start="91681" e_stop="91690" e_length="10"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87369" stop="88102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721460" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87396" stop="88108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87402" stop="88089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87404" stop="87823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87794" stop="88109"/>
              <exon start="88685" stop="88689"/>
              <exon start="91206" stop="91227"/>
              <exon start="91681" stop="91690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242122" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACCTTTCTATTTGCACCAAAACATCATATTTCTTCATGGCGGAATACAAACAGCACCAACGCCTATTTGACCGTTTTGATGAGAACAGAGACGGGAAAATATCTGCCGAGGAGCTTCAACAGTGTGTGCATTTGATTGGCAAAGACATGTCATATGAGGAAGCAAAGGCTGCTGTTGAGCATAATGATTCAGACAATGATGGCTTGTTGGATTTTGAAGATTTTGTGAGATTAATTGAAGGTGGAAGTGAAGAAGAGAAGGCGCACGAGTTGAAGGAGGCGTTCAAGATGTATGAAATGGAAGGGTGTGGATGCATAACGCCTGAGAGTTTGAATAGAATGCTTTCTAGATTGGGAGAATCAACAACAATTGATGAATGCAGAGGAATGATTTGCCGCTATGATATTGATGGCGATGGTCTCCTTAATTTTCATGAGTTTGAGATCATGATGCGTTGCTAGTACTCGTCACTCAACTAATACTTATTACTATCTCTATCTCATAAAGTGATCACTCTTCAGTTAAGACACCTAGTTGCTACTTTGTCTCATTGTTTTGTTTCTGCTTTATTTGATTCTTTCAGTCTTTAATTGGTTGATCACTCATTCTTTCTGTATATTCTCTAAAACCAGGTTACATATGTTTATTTGTAATTTCTCCATTAGTACCCATATTTTGTGCTTTACATGTTTGTAACACTACTACTATGATTAATGATCTGTAATATATGTTTCATTTTA : AGAGG : AAAAACAAGAAGGGTTAACCAG : ACTGTTTTTC</gDNA_template>
            <first_frame> N  L  S  I  C  T  K  T  S  Y  F  F  M  A  E  Y  K  Q  H  Q  R  L  F  D  R  F  D  E  N  R  D  G  K  I  S  A  E  E  L  Q  Q  C  V  H  L  I  G  K  D  M  S  Y  E  E  A  K  A  A  V  E  H  N  D  S  D  N  D  G  L  L  D  F  E  D  F  V  R  L  I  E  G  G  S  E  E  E  K  A  H  E  L  K  E  A  F  K  M  Y  E  M  E  G  C  G  C  I  T  P  E  S  L  N  R  M  L  S  R  L  G  E  S  T  T  I  D  E  C  R  G  M  I  C  R  Y  D  I  D  G  D  G  L  L  N  F  H  E  F  E  I  M  M  R  C  *  Y  S  S  L  N  *  Y  L  L  L  S  L  S  H  K  V  I  T  L  Q  L  R  H  L  V  A  T  L  S  H  C  F  V  S  A  L  F  D  S  F  S  L  *  L  V  D  H  S  F  F  L  Y  I  L  *  N  Q  V  T  Y  V  Y  L  *  F  L  H  *  Y  P  Y  F  V  L  Y  M  F  V  T  L  L  L  *  L  M  I  C  N  I  C  F  I  L  :  R  G :   K  T  R  R  V  N  Q  :  T  V  F  </first_frame>
            <second_frame>  T  F  L  F  A  P  K  H  H  I  S  S  W  R  N  T  N  S  T  N  A  Y  L  T  V  L  M  R  T  E  T  G  K  Y  L  P  R  S  F  N  S  V  C  I  *  L  A  K  T  C  H  M  R  K  Q  R  L  L  L  S  I  M  I  Q  T  M  M  A  C  W  I  L  K  I  L  *  D  *  L  K  V  E  V  K  K  R  R  R  T  S  *  R  R  R  S  R  C  M  K  W  K  G  V  D  A  *  R  L  R  V  *  I  E  C  F  L  D  W  E  N  Q  Q  Q  L  M  N  A  E  E  *  F  A  A  M  I  L  M  A  M  V  S  L  I  F  M  S  L  R  S  *  C  V  A  S  T  R  H  S  T  N  T  Y  Y  Y  L  Y  L  I  K  *  S  L  F  S  *  D  T  *  L  L  L  C  L  I  V  L  F  L  L  Y  L  I  L  S  V  F  N  W  L  I  T  H  S  F  C  I  F  S  K  T  R  L  H  M  F  I  C  N  F  S  I  S  T  H  I  L  C  F  T  C  L  *  H  Y  Y  Y  D  *  *  S  V  I  Y  V  S  F  * :   E   : E  K  Q  E  G  L  T  R :   L  F  F </second_frame>
            <third_frame>   P  F  Y  L  H  Q  N  I  I  F  L  H  G  G  I  Q  T  A  P  T  P  I  *  P  F  *  *  E  Q  R  R  E  N  I  C  R  G  A  S  T  V  C  A  F  D  W  Q  R  H  V  I  *  G  S  K  G  C  C  *  A  *  *  F  R  Q  *  W  L  V  G  F  *  R  F  C  E  I  N  *  R  W  K  *  R  R  E  G  A  R  V  E  G  G  V  Q  D  V  *  N  G  R  V  W  M  H  N  A  *  E  F  E  *  N  A  F  *  I  G  R  I  N  N  N  *  *  M  Q  R  N  D  L  P  L  *  Y  *  W  R  W  S  P  *  F  S  *  V  *  D  H  D  A  L  L  V  L  V  T  Q  L  I  L  I  T  I  S  I  S  *  S  D  H  S  S  V  K  T  P  S  C  Y  F  V  S  L  F  C  F  C  F  I  *  F  F  Q  S  L  I  G  *  S  L  I  L  S  V  Y  S  L  K  P  G  Y  I  C  L  F  V  I  S  P  L  V  P  I  F  C  A  L  H  V  C  N  T  T  T  M  I  N  D  L  *  Y  M  F  H  F   : K  R  :  K  N  K  K  G  *  P   : D  C  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0042D07.2" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87369" stop="87830"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>459</number_coding_nucleotides>
                  <number_encoded_amino_acids>153</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLSICTKTSYFFMAEYKQHQRLFDRFDENRDGKISAEELQQCVHLIGKDMSYEEAKAAVEHNDSDNDGLLDFEDFVRLIEGGSEEEKAHELKEAFKMYEMEGCGCITPESLNRMLSRLGESTTIDECRGMICRYDIDGDGLLNFHEFEIMMRC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="104277" PGL_stop="107256"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104277" e_stop="104725"/>
            <exon e_start="106176" e_stop="106256"/>
            <exon e_start="106596" e_stop="107256"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="104277" e_stop="104725" e_length="449"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.975">
            <gDNA_intron_boundary i_start="104726" i_stop="106175" i_length="1450"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="106176" e_stop="106256" e_length="81"/>
          </exon>
          <intron i_serial="2" don_prob="0.958" acc_prob="0.990">
            <gDNA_intron_boundary i_start="106257" i_stop="106595" i_length="339"/>
          </intron>
          <exon e_serial="3" e_score="0.980">
            <gDNA_exon_boundary e_start="106596" e_stop="107256" e_length="661"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104277" stop="104725"/>
              <exon start="106176" stop="106217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394033" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104278" stop="104725"/>
              <exon start="106176" stop="106256"/>
              <exon start="106596" stop="106626"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104362" stop="104725"/>
              <exon start="106176" stop="106256"/>
              <exon start="106596" stop="106940"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730017" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104376" stop="104725"/>
              <exon start="106176" stop="106256"/>
              <exon start="106596" stop="106775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272660" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104380" stop="104725"/>
              <exon start="106176" stop="106256"/>
              <exon start="106596" stop="106635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104381" stop="104725"/>
              <exon start="106176" stop="106256"/>
              <exon start="106596" stop="106650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104388" stop="104725"/>
              <exon start="106176" stop="106256"/>
              <exon start="106596" stop="106880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238333" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104388" stop="104725"/>
              <exon start="106176" stop="106256"/>
              <exon start="106596" stop="106779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104388" stop="104725"/>
              <exon start="106176" stop="106256"/>
              <exon start="106596" stop="106758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104388" stop="104725"/>
              <exon start="106176" stop="106256"/>
              <exon start="106596" stop="106726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104388" stop="104725"/>
              <exon start="106176" stop="106256"/>
              <exon start="106596" stop="106697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104397" stop="104725"/>
              <exon start="106176" stop="106256"/>
              <exon start="106596" stop="106647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247857" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104400" stop="104725"/>
              <exon start="106176" stop="106256"/>
              <exon start="106596" stop="106777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104403" stop="104725"/>
              <exon start="106176" stop="106256"/>
              <exon start="106596" stop="107027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104431" stop="104725"/>
              <exon start="106176" stop="106256"/>
              <exon start="106596" stop="106759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104442" stop="104725"/>
              <exon start="106176" stop="106256"/>
              <exon start="106596" stop="107017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710998" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106238" stop="106256"/>
              <exon start="106596" stop="107238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106685" stop="107256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712858" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACCTTTTAAGATAGGACCCACCCATTTTCTCCATTACAAATTACGATAATTTTGGTATTGAAAGCCCCACAATTTTCCTATGATATTTTGCTCTCCACTCTGTTCTGTTCTGCTATCGGGCATTTCAACAATTTGTCCCTTCTTTGCCGAAGCGTAGCGCTCCCTTTTACTGCATTTTCTCCTACGACTTTCATCTAGGTTCTTAGAGGCATCTCGGTGGTACAAATCAAGTGTTTTCTGTTAGCAATGGGTTCATCTGCTTCAGTGCATAAAGATCCGAAATCAGCAATGAAGCTCCGTTTTGTCTTTGCATCTAAATCTGACAAGCTTGTGAGTCCCTCACCTATCAAAGATAAACCCCTTGATACTGCTGAAATCAAACTCTCTCTTCCTCAAATCAAACCTCAGCGTTCCCCGGTGCTCCCGCTTAACAGTTTTAGCGACTATG : GTAGCAAGGAGGAGGCCTTTTTTGATTCCCAGGCCTGGTTGGAGTCAGATTGTGATGATGACTTCTTTAGTGTCAAGGGAG : ATTTTACACCATCACTTGGAAATACTCCTTCGTGTGGAAATACACCTGTGCATCGAGGTTTGTTGGTCGGTAATCTGCTAGGTAATCGAGCCTCTTTTGGAGAAAGAACTTCTGCTTCTATACCGCAATCTTCTCCAATACACAAGAGGAAGAATTTACTTGAGCTTTTCAAAGAAAGCTCAAGAAACCGGAACCCGAATGAGCATGGTGCTGAAGACAACGAAAATATACAGGCAGCTGGTCTACAGCTACCACCTAAATCCACATTTAGCACACCTCATGTGCCGGTGTCTAGTGGCAAGAGCACCCCTGTAGGAAAGTACAAAAGTGAGGCAAAATCGCTGAGGTCAGTACAATGTTGTCTTCCCAGGTTGAGTGGCAGTTTTAGGGAAAAGAGGAAGAGTATGAGTCCTGCAAATACCGTGGGCTAATAGCTAGAACTCGGCTTTCATAAGTTCTCTATGTATGTATATGCTAGTGCACAAGGAATTGTGCATCTATTGAGCTTTGCACTTTGACCCTCAGTAACTTGAGGGCCGTGAGATGAGGTGTGCATTGGCACACACTTACTGTGTATAAATTAAACTTATAAAGAACAGCTTTGTTAATAAATTAACAAGGTCGTATTCTGTTAATGTATATGTTTCTTCTGCTTTCCTCA</gDNA_template>
            <first_frame> N  L  L  R  *  D  P  P  I  F  S  I  T  N  Y  D  N  F  G  I  E  S  P  T  I  F  L  *  Y  F  A  L  H  S  V  L  F  C  Y  R  A  F  Q  Q  F  V  P  S  L  P  K  R  S  A  P  F  Y  C  I  F  S  Y  D  F  H  L  G  S  *  R  H  L  G  G  T  N  Q  V  F  S  V  S  N  G  F  I  C  F  S  A  *  R  S  E  I  S  N  E  A  P  F  C  L  C  I  *  I  *  Q  A  C  E  S  L  T  Y  Q  R  *  T  P  *  Y  C  *  N  Q  T  L  S  S  S  N  Q  T  S  A  F  P  G  A  P  A  *  Q  F  *  R  L  W :   *  Q  G  G  G  L  F  *  F  P  G  L  V  G  V  R  L  *  *  *  L  L  *  C  Q  G  R :   F  Y  T  I  T  W  K  Y  S  F  V  W  K  Y  T  C  A  S  R  F  V  G  R  *  S  A  R  *  S  S  L  F  W  R  K  N  F  C  F  Y  T  A  I  F  S  N  T  Q  E  E  E  F  T  *  A  F  Q  R  K  L  K  K  P  E  P  E  *  A  W  C  *  R  Q  R  K  Y  T  G  S  W  S  T  A  T  T  *  I  H  I  *  H  T  S  C  A  G  V  *  W  Q  E  H  P  C  R  K  V  Q  K  *  G  K  I  A  E  V  S  T  M  L  S  S  Q  V  E  W  Q  F  *  G  K  E  E  E  Y  E  S  C  K  Y  R  G  L  I  A  R  T  R  L  S  *  V  L  Y  V  C  I  C  *  C  T  R  N  C  A  S  I  E  L  C  T  L  T  L  S  N  L  R  A  V  R  *  G  V  H  W  H  T  L  T  V  Y  K  L  N  L  *  R  T  A  L  L  I  N  *  Q  G  R  I  L  L  M  Y  M  F  L  L  L  S  S </first_frame>
            <second_frame>  T  F  *  D  R  T  H  P  F  S  P  L  Q  I  T  I  I  L  V  L  K  A  P  Q  F  S  Y  D  I  L  L  S  T  L  F  C  S  A  I  G  H  F  N  N  L  S  L  L  C  R  S  V  A  L  P  F  T  A  F  S  P  T  T  F  I  *  V  L  R  G  I  S  V  V  Q  I  K  C  F  L  L  A  M  G  S  S  A  S  V  H  K  D  P  K  S  A  M  K  L  R  F  V  F  A  S  K  S  D  K  L  V  S  P  S  P  I  K  D  K  P  L  D  T  A  E  I  K  L  S  L  P  Q  I  K  P  Q  R  S  P  V  L  P  L  N  S  F  S  D  Y   : G  S  K  E  E  A  F  F  D  S  Q  A  W  L  E  S  D  C  D  D  D  F  F  S  V  K  G   : D  F  T  P  S  L  G  N  T  P  S  C  G  N  T  P  V  H  R  G  L  L  V  G  N  L  L  G  N  R  A  S  F  G  E  R  T  S  A  S  I  P  Q  S  S  P  I  H  K  R  K  N  L  L  E  L  F  K  E  S  S  R  N  R  N  P  N  E  H  G  A  E  D  N  E  N  I  Q  A  A  G  L  Q  L  P  P  K  S  T  F  S  T  P  H  V  P  V  S  S  G  K  S  T  P  V  G  K  Y  K  S  E  A  K  S  L  R  S  V  Q  C  C  L  P  R  L  S  G  S  F  R  E  K  R  K  S  M  S  P  A  N  T  V  G  *  *  L  E  L  G  F  H  K  F  S  M  Y  V  Y  A  S  A  Q  G  I  V  H  L  L  S  F  A  L  *  P  S  V  T  *  G  P  *  D  E  V  C  I  G  T  H  L  L  C  I  N  *  T  Y  K  E  Q  L  C  *  *  I  N  K  V  V  F  C  *  C  I  C  F  F  C  F  P   </second_frame>
            <third_frame>   P  F  K  I  G  P  T  H  F  L  H  Y  K  L  R  *  F  W  Y  *  K  P  H  N  F  P  M  I  F  C  S  P  L  C  S  V  L  L  S  G  I  S  T  I  C  P  F  F  A  E  A  *  R  S  L  L  L  H  F  L  L  R  L  S  S  R  F  L  E  A  S  R  W  Y  K  S  S  V  F  C  *  Q  W  V  H  L  L  Q  C  I  K  I  R  N  Q  Q  *  S  S  V  L  S  L  H  L  N  L  T  S  L  *  V  P  H  L  S  K  I  N  P  L  I  L  L  K  S  N  S  L  F  L  K  S  N  L  S  V  P  R  C  S  R  L  T  V  L  A  T  M  :  V  A  R  R  R  P  F  L  I  P  R  P  G  W  S  Q  I  V  M  M  T  S  L  V  S  R  E  :  I  L  H  H  H  L  E  I  L  L  R  V  E  I  H  L  C  I  E  V  C  W  S  V  I  C  *  V  I  E  P  L  L  E  K  E  L  L  L  L  Y  R  N  L  L  Q  Y  T  R  G  R  I  Y  L  S  F  S  K  K  A  Q  E  T  G  T  R  M  S  M  V  L  K  T  T  K  I  Y  R  Q  L  V  Y  S  Y  H  L  N  P  H  L  A  H  L  M  C  R  C  L  V  A  R  A  P  L  *  E  S  T  K  V  R  Q  N  R  *  G  Q  Y  N  V  V  F  P  G  *  V  A  V  L  G  K  R  G  R  V  *  V  L  Q  I  P  W  A  N  S  *  N  S  A  F  I  S  S  L  C  M  Y  M  L  V  H  K  E  L  C  I  Y  *  A  L  H  F  D  P  Q  *  L  E  G  R  E  M  R  C  A  L  A  H  T  Y  C  V  *  I  K  L  I  K  N  S  F  V  N  K  L  T  R  S  Y  S  V  N  V  Y  V  S  S  A  F  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0042D07.2" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104476" stop="104725"/>
                    <exon start="106176" stop="106256"/>
                    <exon start="106596" stop="107026"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>759</number_coding_nucleotides>
                  <number_encoded_amino_acids>253</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLRGISVVQIKCFLLAMGSSASVHKDPKSAMKLRFVFASKSDKLVSPSPIKDKPLDTAEIKLSLPQIKPQRSPVLPLNSFSDYGSKEEAFFDSQAWLESDCDDDFFSVKGDFTPSLGNTPSCGNTPVHRGLLVGNLLGNRASFGERTSASIPQSSPIHKRKNLLELFKESSRNRNPNEHGAEDNENIQAAGLQLPPKSTFSTPHVPVSSGKSTPVGKYKSEAKSLRSVQCCLPRLSGSFREKRKSMSPANTVG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="104277" e_stop="104725"/>
            <exon e_start="106176" e_stop="106256"/>
            <exon e_start="106576" e_stop="107256"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.975" e_score="0.967"/>
          <exon-intron don_prob="0.958" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.967">
            <gDNA_exon_boundary e_start="104277" e_stop="104725" e_length="449"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.975">
            <gDNA_intron_boundary i_start="104726" i_stop="106175" i_length="1450"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="106176" e_stop="106256" e_length="81"/>
          </exon>
          <intron i_serial="2" don_prob="0.958" acc_prob="0.000">
            <gDNA_intron_boundary i_start="106257" i_stop="106575" i_length="319"/>
          </intron>
          <exon e_serial="3" e_score="0.993">
            <gDNA_exon_boundary e_start="106576" e_stop="107256" e_length="681"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104277" stop="104725"/>
              <exon start="106176" stop="106217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394033" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104404" stop="104725"/>
              <exon start="106176" stop="106256"/>
              <exon start="106576" stop="106802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106685" stop="107256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712858" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACCTTTTAAGATAGGACCCACCCATTTTCTCCATTACAAATTACGATAATTTTGGTATTGAAAGCCCCACAATTTTCCTATGATATTTTGCTCTCCACTCTGTTCTGTTCTGCTATCGGGCATTTCAACAATTTGTCCCTTCTTTGCCGAAGCGTAGCGCTCCCTTTTACTGCATTTTCTCCTACGACTTTCATCTAGGTTCTTAGAGGCATCTCGGTGGTACAAATCAAGTGTTTTCTGTTAGCAATGGGTTCATCTGCTTCAGTGCATAAAGATCCGAAATCAGCAATGAAGCTCCGTTTTGTCTTTGCATCTAAATCTGACAAGCTTGTGAGTCCCTCACCTATCAAAGATAAACCCCTTGATACTGCTGAAATCAAACTCTCTCTTCCTCAAATCAAACCTCAGCGTTCCCCGGTGCTCCCGCTTAACAGTTTTAGCGACTATG : GTAGCAAGGAGGAGGCCTTTTTTGATTCCCAGGCCTGGTTGGAGTCAGATTGTGATGATGACTTCTTTAGTGTCAAGGGAG : TCTATCTGTCTTCAATGCAGATTTTACACCATCACTTGGAAATACTCCTTCGTGTGGAAATACACCTGTGCATCGAGGTTTGTTGGTCGGTAATCTGCTAGGTAATCGAGCCTCTTTTGGAGAAAGAACTTCTGCTTCTATACCGCAATCTTCTCCAATACACAAGAGGAAGAATTTACTTGAGCTTTTCAAAGAAAGCTCAAGAAACCGGAACCCGAATGAGCATGGTGCTGAAGACAACGAAAATATACAGGCAGCTGGTCTACAGCTACCACCTAAATCCACATTTAGCACACCTCATGTGCCGGTGTCTAGTGGCAAGAGCACCCCTGTAGGAAAGTACAAAAGTGAGGCAAAATCGCTGAGGTCAGTACAATGTTGTCTTCCCAGGTTGAGTGGCAGTTTTAGGGAAAAGAGGAAGAGTATGAGTCCTGCAAATACCGTGGGCTAATAGCTAGAACTCGGCTTTCATAAGTTCTCTATGTATGTATATGCTAGTGCACAAGGAATTGTGCATCTATTGAGCTTTGCACTTTGACCCTCAGTAACTTGAGGGCCGTGAGATGAGGTGTGCATTGGCACACACTTACTGTGTATAAATTAAACTTATAAAGAACAGCTTTGTTAATAAATTAACAAGGTCGTATTCTGTTAATGTATATGTTTCTTCTGCTTTCCTCA</gDNA_template>
            <first_frame> N  L  L  R  *  D  P  P  I  F  S  I  T  N  Y  D  N  F  G  I  E  S  P  T  I  F  L  *  Y  F  A  L  H  S  V  L  F  C  Y  R  A  F  Q  Q  F  V  P  S  L  P  K  R  S  A  P  F  Y  C  I  F  S  Y  D  F  H  L  G  S  *  R  H  L  G  G  T  N  Q  V  F  S  V  S  N  G  F  I  C  F  S  A  *  R  S  E  I  S  N  E  A  P  F  C  L  C  I  *  I  *  Q  A  C  E  S  L  T  Y  Q  R  *  T  P  *  Y  C  *  N  Q  T  L  S  S  S  N  Q  T  S  A  F  P  G  A  P  A  *  Q  F  *  R  L  W :   *  Q  G  G  G  L  F  *  F  P  G  L  V  G  V  R  L  *  *  *  L  L  *  C  Q  G  S :   L  S  V  F  N  A  D  F  T  P  S  L  G  N  T  P  S  C  G  N  T  P  V  H  R  G  L  L  V  G  N  L  L  G  N  R  A  S  F  G  E  R  T  S  A  S  I  P  Q  S  S  P  I  H  K  R  K  N  L  L  E  L  F  K  E  S  S  R  N  R  N  P  N  E  H  G  A  E  D  N  E  N  I  Q  A  A  G  L  Q  L  P  P  K  S  T  F  S  T  P  H  V  P  V  S  S  G  K  S  T  P  V  G  K  Y  K  S  E  A  K  S  L  R  S  V  Q  C  C  L  P  R  L  S  G  S  F  R  E  K  R  K  S  M  S  P  A  N  T  V  G  *  *  L  E  L  G  F  H  K  F  S  M  Y  V  Y  A  S  A  Q  G  I  V  H  L  L  S  F  A  L  *  P  S  V  T  *  G  P  *  D  E  V  C  I  G  T  H  L  L  C  I  N  *  T  Y  K  E  Q  L  C  *  *  I  N  K  V  V  F  C  *  C  I  C  F  F  C  F  P   </first_frame>
            <second_frame>  T  F  *  D  R  T  H  P  F  S  P  L  Q  I  T  I  I  L  V  L  K  A  P  Q  F  S  Y  D  I  L  L  S  T  L  F  C  S  A  I  G  H  F  N  N  L  S  L  L  C  R  S  V  A  L  P  F  T  A  F  S  P  T  T  F  I  *  V  L  R  G  I  S  V  V  Q  I  K  C  F  L  L  A  M  G  S  S  A  S  V  H  K  D  P  K  S  A  M  K  L  R  F  V  F  A  S  K  S  D  K  L  V  S  P  S  P  I  K  D  K  P  L  D  T  A  E  I  K  L  S  L  P  Q  I  K  P  Q  R  S  P  V  L  P  L  N  S  F  S  D  Y   : G  S  K  E  E  A  F  F  D  S  Q  A  W  L  E  S  D  C  D  D  D  F  F  S  V  K  G   : V  Y  L  S  S  M  Q  I  L  H  H  H  L  E  I  L  L  R  V  E  I  H  L  C  I  E  V  C  W  S  V  I  C  *  V  I  E  P  L  L  E  K  E  L  L  L  L  Y  R  N  L  L  Q  Y  T  R  G  R  I  Y  L  S  F  S  K  K  A  Q  E  T  G  T  R  M  S  M  V  L  K  T  T  K  I  Y  R  Q  L  V  Y  S  Y  H  L  N  P  H  L  A  H  L  M  C  R  C  L  V  A  R  A  P  L  *  E  S  T  K  V  R  Q  N  R  *  G  Q  Y  N  V  V  F  P  G  *  V  A  V  L  G  K  R  G  R  V  *  V  L  Q  I  P  W  A  N  S  *  N  S  A  F  I  S  S  L  C  M  Y  M  L  V  H  K  E  L  C  I  Y  *  A  L  H  F  D  P  Q  *  L  E  G  R  E  M  R  C  A  L  A  H  T  Y  C  V  *  I  K  L  I  K  N  S  F  V  N  K  L  T  R  S  Y  S  V  N  V  Y  V  S  S  A  F  L  </second_frame>
            <third_frame>   P  F  K  I  G  P  T  H  F  L  H  Y  K  L  R  *  F  W  Y  *  K  P  H  N  F  P  M  I  F  C  S  P  L  C  S  V  L  L  S  G  I  S  T  I  C  P  F  F  A  E  A  *  R  S  L  L  L  H  F  L  L  R  L  S  S  R  F  L  E  A  S  R  W  Y  K  S  S  V  F  C  *  Q  W  V  H  L  L  Q  C  I  K  I  R  N  Q  Q  *  S  S  V  L  S  L  H  L  N  L  T  S  L  *  V  P  H  L  S  K  I  N  P  L  I  L  L  K  S  N  S  L  F  L  K  S  N  L  S  V  P  R  C  S  R  L  T  V  L  A  T  M  :  V  A  R  R  R  P  F  L  I  P  R  P  G  W  S  Q  I  V  M  M  T  S  L  V  S  R  E  :  S  I  C  L  Q  C  R  F  Y  T  I  T  W  K  Y  S  F  V  W  K  Y  T  C  A  S  R  F  V  G  R  *  S  A  R  *  S  S  L  F  W  R  K  N  F  C  F  Y  T  A  I  F  S  N  T  Q  E  E  E  F  T  *  A  F  Q  R  K  L  K  K  P  E  P  E  *  A  W  C  *  R  Q  R  K  Y  T  G  S  W  S  T  A  T  T  *  I  H  I  *  H  T  S  C  A  G  V  *  W  Q  E  H  P  C  R  K  V  Q  K  *  G  K  I  A  E  V  S  T  M  L  S  S  Q  V  E  W  Q  F  *  G  K  E  E  E  Y  E  S  C  K  Y  R  G  L  I  A  R  T  R  L  S  *  V  L  Y  V  C  I  C  *  C  T  R  N  C  A  S  I  E  L  C  T  L  T  L  S  N  L  R  A  V  R  *  G  V  H  W  H  T  L  T  V  Y  K  L  N  L  *  R  T  A  L  L  I  N  *  Q  G  R  I  L  L  M  Y  M  F  L  L  L  S  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0042D07.2" strand="+"/>
                <serials PGL_serial="17" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106246" stop="106256"/>
                    <exon start="106576" stop="107026"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>459</number_coding_nucleotides>
                  <number_encoded_amino_acids>153</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CQGSLSVFNADFTPSLGNTPSCGNTPVHRGLLVGNLLGNRASFGERTSASIPQSSPIHKRKNLLELFKESSRNRNPNEHGAEDNENIQAAGLQLPPKSTFSTPHVPVSSGKSTPVGKYKSEAKSLRSVQCCLPRLSGSFREKRKSMSPANTVG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0042D07.2" strand="+"/>
                <serials PGL_serial="17" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104476" stop="104725"/>
                    <exon start="106176" stop="106256"/>
                    <exon start="106576" stop="106676"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>429</number_coding_nucleotides>
                  <number_encoded_amino_acids>143</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLRGISVVQIKCFLLAMGSSASVHKDPKSAMKLRFVFASKSDKLVSPSPIKDKPLDTAEIKLSLPQIKPQRSPVLPLNSFSDYGSKEEAFFDSQAWLESDCDDDFFSVKGVYLSSMQILHHHLEILLRVEIHLCIEVCWSVIC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 208 chains have been computed
$ 
$ memory statistics:
$ 526992 bytes spliced alignments in total
$ 150 spliced alignments have been stored
$ 3513 bytes was the average size of a spliced alignment
$ 29072 bytes predicted gene locations in total
$ 17 predicted gene locations have been stored
$ 1710 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 236 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 10:53:33
-->
