<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 10:49:23"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02SLe0042O06-LZDxT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02SLe0042O06-LZDxT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042O06-LZDxT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E239728" ref_strand="+" ref_description="SGN-E239728 [cLED-33-I23]">
      <seq>aacagactttctggtccattgccttcatccttgaacaactgcacacgattgtggaaaatagacatgaatgagaatgagttagatggaaatttaccaccttggtttggtacactttcaaagctgatagtcctgagtcttcggtctaataaattcgatggtgaactagctccagaactttgcaagctcaatgatcttcaaatcttggatcttgccaacaacaatttgtttggagctatacctcggtgtgttaacaatttcacagcaatggtgaatggaaggaaggaaattagagacggagacgacgagatggattattcttattatgttggagttttcagggagagtgcaagagtagcatctaagggtcacatgtatcagtatgataccattttgtgattgtttacaagcatggatctttctaacaatagcctttctggaaacattcctatgagtcttacaagtcttgttggattgagatcattaaatttctcccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042O06-LZDxT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0042O06.2" temp_strand="+" temp_description="C02SLe0042O06.2  AC215455.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042O06 sequenced_by:kribb upload_account_name:korea">
        <position start="20822" stop="21916"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21122" g_stop="21616" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="495" r_length="495" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042O06.2" gen_strand="+" ref_id="SGN-E239728" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042O06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239728" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21122" e_stop="21616"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGACTTTCTGGTCCATTGCCTTCATCCTTGAACAACTGCACACGATTGTGGAAAATAGACATGAATGAGAATGAGTTAGATGGAAATTTACCACCTTGGTTTGGTACACTTTCAAAGCTGATAGTCCTGAGTCTTCGGTCTAATAAATTCGATGGTGAACTAGCTCCAGAACTTTGCAAGCTCAATGATCTTCAAATCTTGGATCTTGCCAACAACAATTTGTTTGGAGCTATACCTCGGTGTGTTAACAATTTCACAGCAATGGTGAATGGAAGGAAGGAAATTAGAGACGGAGACGACGAGATGGATTATTCTTATTATGTTGGAGTTTTCAGGGAGAGTGCAAGAGTAGCAACTAAGGGTAACATGTATCAGTATGATACCATTTTGTCATTGTTTACAAGCATGGATCTTTCTAACAATAGCCTTTCTGGAAACATTCCTATGAGTCTTACAAGTCTTGTTGGATTGAGATCATTAAATTTCTCCCAC</genome_strand>
        <mrna_strand>AACAGACTTTCTGGTCCATTGCCTTCATCCTTGAACAACTGCACACGATTGTGGAAAATAGACATGAATGAGAATGAGTTAGATGGAAATTTACCACCTTGGTTTGGTACACTTTCAAAGCTGATAGTCCTGAGTCTTCGGTCTAATAAATTCGATGGTGAACTAGCTCCAGAACTTTGCAAGCTCAATGATCTTCAAATCTTGGATCTTGCCAACAACAATTTGTTTGGAGCTATACCTCGGTGTGTTAACAATTTCACAGCAATGGTGAATGGAAGGAAGGAAATTAGAGACGGAGACGACGAGATGGATTATTCTTATTATGTTGGAGTTTTCAGGGAGAGTGCAAGAGTAGCATCTAAGGGTCACATGTATCAGTATGATACCATTTTGTGATTGTTTACAAGCATGGATCTTTCTAACAATAGCCTTTCTGGAAACATTCCTATGAGTCTTACAAGTCTTGTTGGATTGAGATCATTAAATTTCTCCCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042O06-LZDxT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E236117" ref_strand="+" ref_description="SGN-E236117 [cLED-16-C14]">
      <seq>aacagactttctggtccattgccttcatccttgaacaactgcacacgattgtggaaaatagacatgaatgagaatgagttagatggaaatttaccaccttggtttggtacactttcaaagctgatagtcctgagtcttcggtctaataaattcgatggtgaactagctccagaactttgcaagctcaatgatcttcaaatcttggatcttgccaacaacaatttgtttggagctatacctcggtgtgttaacaatttcacagcaatggtgaatggaaggaaggaaattagagacggagacgacgagatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042O06-LZDxT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0042O06.2" temp_strand="+" temp_description="C02SLe0042O06.2  AC215455.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042O06 sequenced_by:kribb upload_account_name:korea">
        <position start="20822" stop="21732"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21122" g_stop="21432" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042O06.2" gen_strand="+" ref_id="SGN-E236117" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>311</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042O06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21122" e_stop="21432"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGACTTTCTGGTCCATTGCCTTCATCCTTGAACAACTGCACACGATTGTGGAAAATAGACATGAATGAGAATGAGTTAGATGGAAATTTACCACCTTGGTTTGGTACACTTTCAAAGCTGATAGTCCTGAGTCTTCGGTCTAATAAATTCGATGGTGAACTAGCTCCAGAACTTTGCAAGCTCAATGATCTTCAAATCTTGGATCTTGCCAACAACAATTTGTTTGGAGCTATACCTCGGTGTGTTAACAATTTCACAGCAATGGTGAATGGAAGGAAGGAAATTAGAGACGGAGACGACGAGATGGA</genome_strand>
        <mrna_strand>AACAGACTTTCTGGTCCATTGCCTTCATCCTTGAACAACTGCACACGATTGTGGAAAATAGACATGAATGAGAATGAGTTAGATGGAAATTTACCACCTTGGTTTGGTACACTTTCAAAGCTGATAGTCCTGAGTCTTCGGTCTAATAAATTCGATGGTGAACTAGCTCCAGAACTTTGCAAGCTCAATGATCTTCAAATCTTGGATCTTGCCAACAACAATTTGTTTGGAGCTATACCTCGGTGTGTTAACAATTTCACAGCAATGGTGAATGGAAGGAAGGAAATTAGAGACGGAGACGACGAGATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042O06-LZDxT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E736289" ref_strand="+" ref_description="SGN-E736289 [LC05AD05]">
      <seq>ccgcctatttggagccctaattgttaatttttaggaacaaaattgagtacttggattgggggaacacattttacctcaatggttatggaccttgtgccgccatcaggtgatcatcacgagaaagaggactgtgggcggcatacttgtgtacgaattgaaagtgctaatggagaacttcgtggtactgtcactgcttcgaagagtgtttgcctgggaatagagaatgcaggaactagttggaatgaaagaacatctaatggcgcaaatgtactgccaaacacagattctttggctgtgaattgctataggaacttggagcctcatgatggtatggaatttgactcgaaagagaatgccttttcacattacaaagaatatgctaagtccattggattttcctcaataataaaggctagccgtcgatccagaatttctggaaaatttattgatgcaaaatttgtttgcagtagatatggaagtaagcgtgaaccttctacttctggcgcagaacctgttccaagtactgatgcagcaggaagtaatcccgtgaaaagaaaaaaaggcagaataaacaggtcttggtcaaaaacagattgtaaggcttgcttgcatgtaaagagaaggtctgatggaaggtgggttattcatacttttgtcaaagagcataaccatgaaatatttccggattggaccagttatcctccaggtcacaggaacattgatctgggtaaaaatgatgcagatgcatttcatgctatccgtgggaggacgaaaaagacttatgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042O06-LZDxT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0042O06.2" temp_strand="-" temp_description="C02SLe0042O06.2  AC215455.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042O06 sequenced_by:kribb upload_account_name:korea">
        <position start="29104" stop="26721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28805" g_stop="28772" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.912"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28771" i_stop="27774" i_length="998">
            <donor d_prob="0.884" d_score="0.00"/>
            <acceptor a_prob="0.304" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27773" g_stop="27021" g_length="753"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="787" r_length="753" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042O06.2" gen_strand="-" ref_id="SGN-E736289" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>787</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042O06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736289" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28805" e_stop="28772"/>
          <exon e_start="27773" e_stop="27021"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACCAATTTGGAGCCCTAATTGTTAATTTTTAGGTAAAAACTGTACTCTCTATACTCGCCCCCAATTTTCAGTAGCTGTGATCATCACAATTCTCTACTGGCACTGTAAATTCCTCTTTTTCCTTACATATGTTTATACATGCAAACTTTGTAGAGTATTTTATTTTTTTTCATATGAAAAGTTTTCTCAATTTTGGTTATTTTTATTTCTACATTTATATGTTCAAGTACTTGATAAATTGATATATGTTTGTGAATATGAGAATGTTGTGGTATAGGTGATTTTTATAGTTAAGTGATGTTTGTTATGATGAAGGCATTTTTCTAAAGGAAAAAACATATTTTCTTTGCTGTTTAGTTGGTGAGATGAAAATATTTTTCAAAGAAGTATATGTTACTCCATCCGAACCAATTTAAGTGTCTTAATTTCCTTTATAACCTGTTTAAAAGAATGTTTCTTTCTGTGGTTAGTAAGTTTTTCAATTTCAACATCTCAAGTGACAAGTTTAAGACCACAAGATTTAGAGAACTTCAGACATTTTTCAATTAAGATCACAAGATTCAAAATCACCCTTTTCTTAGACACTTAAATTGGGATGGAAGGATTAAGAGTTAAAATTATGTTGACAAACTCAAAGAGTCTTTTGGTAAAAAAAATTAGTGCTAGAGATTAGTACTTAATAATGCCTAGCAAGTATGAACAATATGGAGCTAACAACATCCTCTCTATATATTTTTGAAGAGATGTGTGCTTCTGTGACATGTTATATAGAAAAGAATTCTGTGGTTGTGCTTTGACAATGTTAGTTCTCATTATTTAATTAAAAAATCCAATTGTTGGTCATTAAAGAATACAAAAGGAAGAATTTCAAATTTACAAGATACGATCTATATGTTTCAGGAGACTATATTTATTGGATTAAGCATTTCTATCTCAAATAGAAACGAGAACTTATAAATTGTGGATGACTTGACTTGAATTTTGTTCTATTAGCCATAATGATGACCAAATAAGAAAAGACATGTTTCAGGAACAAAATTGAGTACTTGGATTGGGGGAACACATTTTACCTCAATGGTTATGGACCTTGTGCCGCCATCAGGTGATCATCACGAGAAAGAGGACTGTGGGCGGCATACTTGTGTACGAATTGAAAGTGCTAATGGAGAACTTCGTGGTACTGTCACTGCTTCGAAGAGTGTTTGCCTGGGAATAGAGAATGCAGGAACTAGTTGGAATGAAAGAACATCTAATGGCGCAAATGTACTGCCAAACACAGATTCTTTGGCTGTGAATTGCTATAGGAACTTGGAGCCTCATGATGGTATGGAATTTGACTCGAAAGAGAATGCCTTTTCACATTACAAAGAATATGCTAAGTCCATTGGATTTTCCTCAATAATAAAGGCTAGCCGTCGATCCAGAATTTCTGGAAAATTTATTGATGCAAAATTTGTTTGCAGTAGATATGGAAGTAAGCGTGAACCTTCTACTTCTGGCGCAGAACCTGTTCCAAGTACTGATGCAGCAGGAAGTAATCCCGTGAAAAGAAAAAAAGGCAGAATAAACAGGTCTTGGTCAAAAACAGATTGTAAGGCTTGCTTGCATGTAAAGAGAAGGTCTGATGGAAGGTGGGTTATTCATACTTTTGTCAAAGAGCATAACCATGAAATATTTCCGGATTGGACCAGTTATCCTCCAGGTCACAGGAACATTGATCTGGGTAAAAATGATGCAGATGCATTTCATGCTATCCGTGGGAGGACGAAAAAGACTTATGCCT</genome_strand>
        <mrna_strand>CCGCCTATTTGGAGCCCTAATTGTTAATTTTTAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAAAATTGAGTACTTGGATTGGGGGAACACATTTTACCTCAATGGTTATGGACCTTGTGCCGCCATCAGGTGATCATCACGAGAAAGAGGACTGTGGGCGGCATACTTGTGTACGAATTGAAAGTGCTAATGGAGAACTTCGTGGTACTGTCACTGCTTCGAAGAGTGTTTGCCTGGGAATAGAGAATGCAGGAACTAGTTGGAATGAAAGAACATCTAATGGCGCAAATGTACTGCCAAACACAGATTCTTTGGCTGTGAATTGCTATAGGAACTTGGAGCCTCATGATGGTATGGAATTTGACTCGAAAGAGAATGCCTTTTCACATTACAAAGAATATGCTAAGTCCATTGGATTTTCCTCAATAATAAAGGCTAGCCGTCGATCCAGAATTTCTGGAAAATTTATTGATGCAAAATTTGTTTGCAGTAGATATGGAAGTAAGCGTGAACCTTCTACTTCTGGCGCAGAACCTGTTCCAAGTACTGATGCAGCAGGAAGTAATCCCGTGAAAAGAAAAAAAGGCAGAATAAACAGGTCTTGGTCAAAAACAGATTGTAAGGCTTGCTTGCATGTAAAGAGAAGGTCTGATGGAAGGTGGGTTATTCATACTTTTGTCAAAGAGCATAACCATGAAATATTTCCGGATTGGACCAGTTATCCTCCAGGTCACAGGAACATTGATCTGGGTAAAAATGATGCAGATGCATTTCATGCTATCCGTGGGAGGACGAAAAAGACTTATGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042O06-LZDxT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E373428" ref_strand="+" ref_description="SGN-E373428 [TUS-31-H10](-)">
      <seq>tcctgtgttgcatcaggtcctcctattgctactagttcaagtttccttggaaatatggtccctctacccaaatccgttgatcaggttgcttcttcagacacccaagattcacatgtgcacccaggtcctcctattgctactagtccaagtttccttggaaatatggtccctctccccaaatccgttgatcaggttgcttcttcagacacccaagattcacatgagaagcaggaaacagatcagacctcagctcctagtacattgggtccattccaggcagagaaaaaagttgaaactaatagcagggattctagcaaaacacagtcagattctgctcgagccagacaggaagaagtagaggaaatatcatctgaagggacagtctctgatcatcaggaggatgaccgtgaaccatagctcttccttatggggagctaattgttgtaatcatctcttgaagtgtaactaaagcctctgaccctccattgttctcagtttttgtagggcaggatgcagttaaagtagcaaatacagtacaggttagacaagttactatgtaaagcttgtgtaagagaaaagaaaaacatagaagttagcatataatattgttcgtcgtccttagagtcggaggtgttgacctcgtaggacttgtttagtagctgggttcagcatttcatttaggacttcctaagtgtcagaactatggttcatgtaagcaaaactttgcttggatgtattttatgtactttgcagcaatgttctgttgttagctgttgtttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042O06-LZDxT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0042O06.2" temp_strand="-" temp_description="C02SLe0042O06.2  AC215455.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042O06 sequenced_by:kribb upload_account_name:korea">
        <position start="38209" stop="36830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37909" g_stop="37122" g_length="788"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="788" r_length="788" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042O06.2" gen_strand="-" ref_id="SGN-E373428" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042O06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373428" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37909" e_stop="37122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTGTGTTGCATCAGGTCCTCCTATTGCTACTAGTTCAAGTTTCCTTGGAAATATGGTCCCTCTACCCAAATCCGTTGATCAGGTTGCTTCTTCAGACACCCAAGATTCACATGTTGCA-CCAGGTCCTCCTATTGCTACTAGTCCAAGTTTCCTTGGAAATATGGTCCCTCTCCCCAAATCCGTTGATCAGGTTGCTTCTTCAGACACCCAAGATTCACATGAGAAGCAGGAAACAGATCAGACCTCAGCTCCTAGTACATTGGGTCCATTCCAGGCAGAGAAAAAAGTTGAAACTAATAGCAGGGATTCTAGCAAAACACAGTCAGATTCTGCTCGAGCCAGACAGGAAGAAGTAGAGGAAATATCATCTGAAGGGACAGTCTCTGATCATCAGGAGGATGACCGTGAACCATAGCTCTTCCTTATGGGGAGCTAATTGTTGTAATCATCTCTTGAAGTGTAACTAAAGCCTCTGACCCTCCATTGTTCTCAGTTTTTGTAGGGCAGGATGCAGTTAAAGTAGCAAATACAGTACAGGTTAGACAAGTTACTATGTAAAGCTTGTGTAAGAGAAAAGAAAAACATAGAAGTTAGCATATAATATTGTTCGTCGTCCTTAGAGTCGGAGGTGTTGACCTCGTAGGACTTGTTTAGTAGCTGGGTTCAGCATTTCATTTAGGACTTCCTAAGTGTCAGAACTATGGTTCATGTAAGCAAAACTTTGCTTGGATGTATTTTATGTACTTTGCAGCAATGTTCTGTTGTTAGCTGTTGTTTATTGTACTT</genome_strand>
        <mrna_strand>TCCTGTGTTGCATCAGGTCCTCCTATTGCTACTAGTTCAAGTTTCCTTGGAAATATGGTCCCTCTACCCAAATCCGTTGATCAGGTTGCTTCTTCAGACACCCAAGATTCACATG-TGCACCCAGGTCCTCCTATTGCTACTAGTCCAAGTTTCCTTGGAAATATGGTCCCTCTCCCCAAATCCGTTGATCAGGTTGCTTCTTCAGACACCCAAGATTCACATGAGAAGCAGGAAACAGATCAGACCTCAGCTCCTAGTACATTGGGTCCATTCCAGGCAGAGAAAAAAGTTGAAACTAATAGCAGGGATTCTAGCAAAACACAGTCAGATTCTGCTCGAGCCAGACAGGAAGAAGTAGAGGAAATATCATCTGAAGGGACAGTCTCTGATCATCAGGAGGATGACCGTGAACCATAGCTCTTCCTTATGGGGAGCTAATTGTTGTAATCATCTCTTGAAGTGTAACTAAAGCCTCTGACCCTCCATTGTTCTCAGTTTTTGTAGGGCAGGATGCAGTTAAAGTAGCAAATACAGTACAGGTTAGACAAGTTACTATGTAAAGCTTGTGTAAGAGAAAAGAAAAACATAGAAGTTAGCATATAATATTGTTCGTCGTCCTTAGAGTCGGAGGTGTTGACCTCGTAGGACTTGTTTAGTAGCTGGGTTCAGCATTTCATTTAGGACTTCCTAAGTGTCAGAACTATGGTTCATGTAAGCAAAACTTTGCTTGGATGTATTTTATGTACTTTGCAGCAATGTTCTGTTGTTAGCTGTTGTTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042O06-LZDxT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E610747" ref_strand="+" ref_description="SGN-E610747 [57915]">
      <seq>gtgaatccttcaactagtacatttcctctaatgaagacaagctctggattgtctccttcacctgacgtgcttcgattggttgcatcctgtgtttcaccaggtccacctattgctactagttcaagtttccttggaaatatggtccctctccccaaatccgttgatcaggttgcttcttcagacacccaagattcacatgaaaagcaggaaacagatcagacctcagctcctagtacattgggtccattccaggcagagaaaaaagttgaaactaatagcagggattctagcaaaacacagtcagattctgctcgacccagacaggaagatgtagaggaaatgtcatctgaagggacagtctctgatcatcaggaggatgaccgtgaaccatagctctttcctatggggagctaattgttgtaatcataatcatctcttgacgtgtaactaaagcctctgaccctccattattctcagtttttgtagggcaggatgcagttaaagtagcaaatacagtacaggttagacaaggtactatgtaaagcttgtgtaagaggaaagaaaaacatagaagttagcatataatgttgttcgtcgtccttagagtcgaaggctttgaccttgtaggacttgtttagtagctgggttcagcatttcatttaggacttcctaagtgtcaaaaatgtggttcatgtaagcaaaactttgcttgtaatgtacttaatgtaacttttgccagtaatgttcttgtgattatctgtggtatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042O06-LZDxT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0042O06.2" temp_strand="-" temp_description="C02SLe0042O06.2  AC215455.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042O06 sequenced_by:kribb upload_account_name:korea">
        <position start="38293" stop="36831"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37993" g_stop="37870" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37869" i_stop="37762" i_length="108">
            <donor d_prob="0.900" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37761" g_stop="37130" g_length="632"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="767" r_length="643" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042O06.2" gen_strand="-" ref_id="SGN-E610747" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042O06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E610747" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37993" e_stop="37870"/>
          <exon e_start="37761" e_stop="37130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAATCCTTCAACTAGAATATTTCCTCTAATGAAGAAAAGCTCTGGATTGTCTCCTTCACCCGAAGTGCTTCGATTGGTTGCATCCTGTGTTGCATCAGGTCCTCCTATTGCTACTAGTTCAAGTTTCCTTGGAAATATGGTCCCTCTACCCAAATCCGTTGATCAGGTTGCTTCTTCAGACACCCAAGATTCACATGTTGCACCAGGTCCTCCTATTGCTACTAGTCCAAGTTTCCTTGGAAATATGGTCCCTCTCCCCAAATCCGTTGATCAGGTTGCTTCTTCAGACACCCAAGATTCACATGAGAAGCAGGAAACAGATCAGACCTCAGCTCCTAGTACATTGGGTCCATTCCAGGCAGAGAAAAAAGTTGAAACTAATAGCAGGGATTCTAGCAAAACACAGTCAGATTCTGCTCGAGCCAGACAGGAAGAAGTAGAGGAAATATCATCTGAAGGGACAGTCTCTGATCATCAGGAGGATGACCGTGAACCATAGCTCTTCCTTATGGGGAGCTAATTGTTG------TAATCATCTCTTGAAGTGTAACTAAAGCCTCTGACCCTCCATTGTTCTCAGTTTTTGTAGGGCAGGATGCAGTTAAAGTAGCAAATACAGTACAGGTTAGACAAGTTACTATGTAAAGCTTGTGTAAGAGAAAAGAAAAACATAGAAGTTAGCATATAATATTGTTCGTCGTCCTTAGAGTCGGAGGTGTTGACCTCGTAGGACTTGTTTAGTAGCTGGGTTCAGCATTTCATTTAGGACTTCCTAAGTGTCAGAACTATGGTTCATGTAAGCAAAACTTTGCTTG-GATGTATTTTATGT-AC-TTTG-CAGCAATGTTC-TGTTGTTAGCTGTTGTTTA</genome_strand>
        <mrna_strand>GTGAATCCTTCAACTAGTACATTTCCTCTAATGAAGACAAGCTCTGGATTGTCTCCTTCACCTGACGTGCTTCGATTGGTTGCATCCTGTGTTTCACCAGGTCCACCTATTGCTACTAGTTCAA............................................................................................................GTTTCCTTGGAAATATGGTCCCTCTCCCCAAATCCGTTGATCAGGTTGCTTCTTCAGACACCCAAGATTCACATGAAAAGCAGGAAACAGATCAGACCTCAGCTCCTAGTACATTGGGTCCATTCCAGGCAGAGAAAAAAGTTGAAACTAATAGCAGGGATTCTAGCAAAACACAGTCAGATTCTGCTCGACCCAGACAGGAAGATGTAGAGGAAATGTCATCTGAAGGGACAGTCTCTGATCATCAGGAGGATGACCGTGAACCATAGCTCTTTCCTATGGGGAGCTAATTGTTGTAATCATAATCATCTCTTGACGTGTAACTAAAGCCTCTGACCCTCCATTATTCTCAGTTTTTGTAGGGCAGGATGCAGTTAAAGTAGCAAATACAGTACAGGTTAGACAAGGTACTATGTAAAGCTTGTGTAAGAGGAAAGAAAAACATAGAAGTTAGCATATAATGTTGTTCGTCGTCCTTAGAGTCGAAGGCTTTGACCTTGTAGGACTTGTTTAGTAGCTGGGTTCAGCATTTCATTTAGGACTTCCTAAGTGTCAAAAATGTGGTTCATGTAAGCAAAACTTTGCTTGTAATGTACTTAATGTAACTTTTGCCAGTAATGTTCTTGTGATTATCTGTGGTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042O06-LZDxT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E415595" ref_strand="-" ref_description="SGN-E415595 [STM-21-J11]">
      <seq>agttcaagtttcctgggaaatatgatccctctcccccaaatccgttgatcaggttgttcttcagacacccaagattcacatgaaaagcgggaaacagatcagacctcagctcctagtacattgggtccattccaggcagagaataaagttgaaactaatagcagggattctagcaaaacacagtcagattctgctcgacccagacaggaagatgtagaggaaatatcatctgaagggacagtctctgatcatcaggaggatgaccatgaaccatagctctttcctatggggagctaattgttgtaatcataatcatctcttgacgtgtaactaaagcctctgaccctccattattctcagtttttgtagggcaggatgcagttaaagtagcaaatacagtacaggttagacaagttactatgtaaagcttgtgtaagaggaaagaaaaacatagaagttagcatataatgttgttcgtcgtccttagagtcgaaggctttgaccttgtaggacttgtttagtagctgggttcagcattgcatttaggacttcctaagtgtcaaaattgtggttcatgtaagcaaaactttgcttgtatgtactttatgtactttgcagtaatgttctgttattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042O06-LZDxT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0042O06.2" temp_strand="-" temp_description="C02SLe0042O06.2  AC215455.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042O06 sequenced_by:kribb upload_account_name:korea">
        <position start="38068" stop="36841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37768" g_stop="37145" g_length="624"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="630" r_length="630" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="634" polyA_stop="644"/>
      <MATCH_line gen_id="C02SLe0042O06.2" gen_strand="-" ref_id="SGN-E415595" ref_strand="-">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042O06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E415595" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="37768" e_stop="37145"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCCAAGTTTCCTTGGAAATATGGTCCCTCT-CCCCAAATCCGTTGATCAGGTTGCTTCTTCAGACACCCAAGATTCACATGAGAAGCAGGAAACAGATCAGACCTCAGCTCCTAGTACATTGGGTCCATTCCAGGCAGAGAAAAAAGTTGAAACTAATAGCAGGGATTCTAGCAAAACACAGTCAGATTCTGCTCGAGCCAGACAGGAAGAAGTAGAGGAAATATCATCTGAAGGGACAGTCTCTGATCATCAGGAGGATGACCGTGAACCATAGCTCTTCCTTATGGGGAGCTAATTGTTG------TAATCATCTCTTGAAGTGTAACTAAAGCCTCTGACCCTCCATTGTTCTCAGTTTTTGTAGGGCAGGATGCAGTTAAAGTAGCAAATACAGTACAGGTTAGACAAGTTACTATGTAAAGCTTGTGTAAGAGAAAAGAAAAACATAGAAGTTAGCATATAATATTGTTCGTCGTCCTTAGAGTCGGAGGTGTTGACCTCGTAGGACTTGTTTAGTAGCTGGGTTCAGCATTTCATTTAGGACTTCCTAAGTGTCAGAACTATGGTTCATGTAAGCAAAACTTTGCTTGGATGTATTTTATGTACTTTGCAGCAATGTTCTGTT</genome_strand>
        <mrna_strand>AGTTCAAGTTTCCTGGGAAATATGATCCCTCTCCCCCAAATCCGTTGATCAGGTTG-TTCTTCAGACACCCAAGATTCACATGAAAAGCGGGAAACAGATCAGACCTCAGCTCCTAGTACATTGGGTCCATTCCAGGCAGAGAATAAAGTTGAAACTAATAGCAGGGATTCTAGCAAAACACAGTCAGATTCTGCTCGACCCAGACAGGAAGATGTAGAGGAAATATCATCTGAAGGGACAGTCTCTGATCATCAGGAGGATGACCATGAACCATAGCTCTTTCCTATGGGGAGCTAATTGTTGTAATCATAATCATCTCTTGACGTGTAACTAAAGCCTCTGACCCTCCATTATTCTCAGTTTTTGTAGGGCAGGATGCAGTTAAAGTAGCAAATACAGTACAGGTTAGACAAGTTACTATGTAAAGCTTGTGTAAGAGGAAAGAAAAACATAGAAGTTAGCATATAATGTTGTTCGTCGTCCTTAGAGTCGAAGGCTTTGACCTTGTAGGACTTGTTTAGTAGCTGGGTTCAGCATTGCATTTAGGACTTCCTAAGTGTCAAAATTGTGGTTCATGTAAGCAAAACTTTGCTTGTATGTACTTTATGTACTTTGCAGTAATGTTCTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042O06-LZDxT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E611095" ref_strand="+" ref_description="SGN-E611095 [60842]">
      <seq>gtctccttcacctgacgtgcttcgattggttgcatcctgtgtttcaccaggtccacctattgctactagttcaagtttccttggaaatatggtccctctccccaaatccgttgatcaggttgcttcttcagacacccaagattcacatgaaaagcaggaaacagatcagacctcagctcctagtacattgggtccattccaggcagagaaaaaagttgaaactaatagcagggattctagcaaaacacagtcagattctgctcgacccagacaggaagatgtagaggaaatgtcatctgaagggacagtctctgatcatcaggaggatgaccgtgaaccatagctctttcctatggggagctaattgttgtaatcataatcatctcttgacgtgtaactaaagcctctgaccctccattattctcagtttttgtagggcaggatgcagttaaagtagcaaatacagtacaggttagacaaggtactatgtaaagcttgtgtaagaggaaagaaaaacatagaagttagcatataatgttgttcgtcgtccttagagtcgaaggctttgaccttgtaggacttgtttagtagctgggttcagcatttcatttaggacttcctaagtgtccaaaatgtgcgttcatgtaagcaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042O06-LZDxT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0042O06.2" temp_strand="-" temp_description="C02SLe0042O06.2  AC215455.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042O06 sequenced_by:kribb upload_account_name:korea">
        <position start="38243" stop="36888"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37943" g_stop="37870" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37869" i_stop="37762" i_length="108">
            <donor d_prob="0.900" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37761" g_stop="37188" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="655" r_length="581" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042O06.2" gen_strand="-" ref_id="SGN-E611095" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042O06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E611095" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37943" e_stop="37870"/>
          <exon e_start="37761" e_stop="37188"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTCCTTCACCCGAAGTGCTTCGATTGGTTGCATCCTGTGTTGCATCAGGTCCTCCTATTGCTACTAGTTCAAGTTTCCTTGGAAATATGGTCCCTCTACCCAAATCCGTTGATCAGGTTGCTTCTTCAGACACCCAAGATTCACATGTTGCACCAGGTCCTCCTATTGCTACTAGTCCAAGTTTCCTTGGAAATATGGTCCCTCTCCCCAAATCCGTTGATCAGGTTGCTTCTTCAGACACCCAAGATTCACATGAGAAGCAGGAAACAGATCAGACCTCAGCTCCTAGTACATTGGGTCCATTCCAGGCAGAGAAAAAAGTTGAAACTAATAGCAGGGATTCTAGCAAAACACAGTCAGATTCTGCTCGAGCCAGACAGGAAGAAGTAGAGGAAATATCATCTGAAGGGACAGTCTCTGATCATCAGGAGGATGACCGTGAACCATAGCTCTTCCTTATGGGGAGCTAATTGTTG------TAATCATCTCTTGAAGTGTAACTAAAGCCTCTGACCCTCCATTGTTCTCAGTTTTTGTAGGGCAGGATGCAGTTAAAGTAGCAAATACAGTACAGGTTAGACAAGTTACTATGTAAAGCTTGTGTAAGAGAAAAGAAAAACATAGAAGTTAGCATATAATATTGTTCGTCGTCCTTAGAGTCGGAGGTGTTGACCTCGTAGGACTTGTTTAGTAGCTGGGTTCAGCATTTCATTTAGGACTTCCTAAGTGTCAGAACTATG-GTTCATGTAAGCAAAAC</genome_strand>
        <mrna_strand>GTCTCCTTCACCTGACGTGCTTCGATTGGTTGCATCCTGTGTTTCACCAGGTCCACCTATTGCTACTAGTTCAA............................................................................................................GTTTCCTTGGAAATATGGTCCCTCTCCCCAAATCCGTTGATCAGGTTGCTTCTTCAGACACCCAAGATTCACATGAAAAGCAGGAAACAGATCAGACCTCAGCTCCTAGTACATTGGGTCCATTCCAGGCAGAGAAAAAAGTTGAAACTAATAGCAGGGATTCTAGCAAAACACAGTCAGATTCTGCTCGACCCAGACAGGAAGATGTAGAGGAAATGTCATCTGAAGGGACAGTCTCTGATCATCAGGAGGATGACCGTGAACCATAGCTCTTTCCTATGGGGAGCTAATTGTTGTAATCATAATCATCTCTTGACGTGTAACTAAAGCCTCTGACCCTCCATTATTCTCAGTTTTTGTAGGGCAGGATGCAGTTAAAGTAGCAAATACAGTACAGGTTAGACAAGGTACTATGTAAAGCTTGTGTAAGAGGAAAGAAAAACATAGAAGTTAGCATATAATGTTGTTCGTCGTCCTTAGAGTCGAAGGCTTTGACCTTGTAGGACTTGTTTAGTAGCTGGGTTCAGCATTTCATTTAGGACTTCCTAAGTGTCCAAAATGTGCGTTCATGTAAGCAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042O06-LZDxT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E550652" ref_strand="+" ref_description="SGN-E550652 [TUS-11-M2]">
      <seq>gaatccttcaactagaatatttcctctaatgaagaaaagctctggattgtctccttcacccgaagtgcttcgattggttgcatcctgtgttgcatcaggtcctcctattgctactagttcaagtttccttggaaatatggtccctctacccaaatccgttgatcaggttgcttcttcagacacccaagattcacatgttgcaccaggtcctcctattgctactagtccaagtttccttggaaatatggtccctctccccaaatccgttgatcaggttgcttcttcagacacccaagattcacatgagaagcaggaaacagatcagacctcagctcctagtacattgggtccattccaggcagagaaaaaagttgaaactaatagcagggattctagcaaaacacagtcagattctgctcgagccagacaggaagaagtagaggaaatatcatctgaagggacagtctctgatcatcaggaggatgaccgtgaaccatagctcttccttatggggagctaattgttgtaatcatctcttgaagtgtaactaaagcctctgaccctccattgttctcagtttttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042O06-LZDxT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0042O06.2" temp_strand="-" temp_description="C02SLe0042O06.2  AC215455.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042O06 sequenced_by:kribb upload_account_name:korea">
        <position start="38291" stop="37108"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37991" g_stop="37408" g_length="584"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="584" r_length="584" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042O06.2" gen_strand="-" ref_id="SGN-E550652" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042O06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37991" e_stop="37408"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCTTCAACTAGAATATTTCCTCTAATGAAGAAAAGCTCTGGATTGTCTCCTTCACCCGAAGTGCTTCGATTGGTTGCATCCTGTGTTGCATCAGGTCCTCCTATTGCTACTAGTTCAAGTTTCCTTGGAAATATGGTCCCTCTACCCAAATCCGTTGATCAGGTTGCTTCTTCAGACACCCAAGATTCACATGTTGCACCAGGTCCTCCTATTGCTACTAGTCCAAGTTTCCTTGGAAATATGGTCCCTCTCCCCAAATCCGTTGATCAGGTTGCTTCTTCAGACACCCAAGATTCACATGAGAAGCAGGAAACAGATCAGACCTCAGCTCCTAGTACATTGGGTCCATTCCAGGCAGAGAAAAAAGTTGAAACTAATAGCAGGGATTCTAGCAAAACACAGTCAGATTCTGCTCGAGCCAGACAGGAAGAAGTAGAGGAAATATCATCTGAAGGGACAGTCTCTGATCATCAGGAGGATGACCGTGAACCATAGCTCTTCCTTATGGGGAGCTAATTGTTGTAATCATCTCTTGAAGTGTAACTAAAGCCTCTGACCCTCCATTGTTCTCAGTTTTTGT</genome_strand>
        <mrna_strand>GAATCCTTCAACTAGAATATTTCCTCTAATGAAGAAAAGCTCTGGATTGTCTCCTTCACCCGAAGTGCTTCGATTGGTTGCATCCTGTGTTGCATCAGGTCCTCCTATTGCTACTAGTTCAAGTTTCCTTGGAAATATGGTCCCTCTACCCAAATCCGTTGATCAGGTTGCTTCTTCAGACACCCAAGATTCACATGTTGCACCAGGTCCTCCTATTGCTACTAGTCCAAGTTTCCTTGGAAATATGGTCCCTCTCCCCAAATCCGTTGATCAGGTTGCTTCTTCAGACACCCAAGATTCACATGAGAAGCAGGAAACAGATCAGACCTCAGCTCCTAGTACATTGGGTCCATTCCAGGCAGAGAAAAAAGTTGAAACTAATAGCAGGGATTCTAGCAAAACACAGTCAGATTCTGCTCGAGCCAGACAGGAAGAAGTAGAGGAAATATCATCTGAAGGGACAGTCTCTGATCATCAGGAGGATGACCGTGAACCATAGCTCTTCCTTATGGGGAGCTAATTGTTGTAATCATCTCTTGAAGTGTAACTAAAGCCTCTGACCCTCCATTGTTCTCAGTTTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042O06-LZDxT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E688301" ref_strand="+" ref_description="SGN-E688301 [t3_tus_11_m02]">
      <seq>gaatccttcaactagaatatttcctctaatgaagaaaagctctggattgtctccttcacccgaagtgcttcgattggttgcatcctgtgttgcatcaggtcctcctattgctactagttcaagtttccttggaaatatggtccctctacccaaatccgttgatcaggttgcttcttcagacacccaagattcacatgttgcaccaggtcctcctattgctactagtccaagtttccttggaaatatggtccctctccccaaatccgttgatcaggttgcttcttcagacacccaagattcacatgagaagcaggaaacagatcagacctcagctcctagtacattgggtccattccaggcagagaaaaaagttgaaactaatagcagggattctagcaaaacacagtcagattctgctcgagccagacaggaagaagtagaggaaatatcatctgaagggacagtctctgatcatcaggaggatgaccgtgaaccatagctcttccttatggggagctaattgttgtaatcatctcttgaagtgtaactaaagcctctgaccctccattgttctcagtttttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042O06-LZDxT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0042O06.2" temp_strand="-" temp_description="C02SLe0042O06.2  AC215455.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042O06 sequenced_by:kribb upload_account_name:korea">
        <position start="38291" stop="37108"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37991" g_stop="37408" g_length="584"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="584" r_length="584" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042O06.2" gen_strand="-" ref_id="SGN-E688301" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042O06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688301" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37991" e_stop="37408"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCTTCAACTAGAATATTTCCTCTAATGAAGAAAAGCTCTGGATTGTCTCCTTCACCCGAAGTGCTTCGATTGGTTGCATCCTGTGTTGCATCAGGTCCTCCTATTGCTACTAGTTCAAGTTTCCTTGGAAATATGGTCCCTCTACCCAAATCCGTTGATCAGGTTGCTTCTTCAGACACCCAAGATTCACATGTTGCACCAGGTCCTCCTATTGCTACTAGTCCAAGTTTCCTTGGAAATATGGTCCCTCTCCCCAAATCCGTTGATCAGGTTGCTTCTTCAGACACCCAAGATTCACATGAGAAGCAGGAAACAGATCAGACCTCAGCTCCTAGTACATTGGGTCCATTCCAGGCAGAGAAAAAAGTTGAAACTAATAGCAGGGATTCTAGCAAAACACAGTCAGATTCTGCTCGAGCCAGACAGGAAGAAGTAGAGGAAATATCATCTGAAGGGACAGTCTCTGATCATCAGGAGGATGACCGTGAACCATAGCTCTTCCTTATGGGGAGCTAATTGTTGTAATCATCTCTTGAAGTGTAACTAAAGCCTCTGACCCTCCATTGTTCTCAGTTTTTGT</genome_strand>
        <mrna_strand>GAATCCTTCAACTAGAATATTTCCTCTAATGAAGAAAAGCTCTGGATTGTCTCCTTCACCCGAAGTGCTTCGATTGGTTGCATCCTGTGTTGCATCAGGTCCTCCTATTGCTACTAGTTCAAGTTTCCTTGGAAATATGGTCCCTCTACCCAAATCCGTTGATCAGGTTGCTTCTTCAGACACCCAAGATTCACATGTTGCACCAGGTCCTCCTATTGCTACTAGTCCAAGTTTCCTTGGAAATATGGTCCCTCTCCCCAAATCCGTTGATCAGGTTGCTTCTTCAGACACCCAAGATTCACATGAGAAGCAGGAAACAGATCAGACCTCAGCTCCTAGTACATTGGGTCCATTCCAGGCAGAGAAAAAAGTTGAAACTAATAGCAGGGATTCTAGCAAAACACAGTCAGATTCTGCTCGAGCCAGACAGGAAGAAGTAGAGGAAATATCATCTGAAGGGACAGTCTCTGATCATCAGGAGGATGACCGTGAACCATAGCTCTTCCTTATGGGGAGCTAATTGTTGTAATCATCTCTTGAAGTGTAACTAAAGCCTCTGACCCTCCATTGTTCTCAGTTTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042O06-LZDxT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E272635" ref_strand="+" ref_description="SGN-E272635 [cLEM-21-F14]">
      <seq>aatccttcaactagaatatttcctctaatgaagaaaagctctggattgtctccttcacccgaagtgcttcgattggttgcatcctgtgttgcatcaggtcctcctattgctactagttcaagtttccttggaaatatggtccctctacccaaatccgttgatcaggttgcttcttcagacacccaagattcacatgttgcaccaggtcctcctattgctactagtccaagtttccttggaaatatggtccctctccccaaatccgttgatcaggttgcttcttcagacacccaagattcacatgagaagcaggaaacagatcagacctcagctcctagtacattgggtccattccaggcagagaaaaaagttgaaactaatagcagggattctagcaaaacacagtcagattctgctcgagccagacaggaagaagtagaggaaatatcatctgaagggacagtctctgatcatcaggaggatgaccgtgaaccatagctcttccttatggggagctaattgttgtaatcatctcttgaagtgtaactaaagcctctgaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042O06-LZDxT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0042O06.2" temp_strand="-" temp_description="C02SLe0042O06.2  AC215455.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042O06 sequenced_by:kribb upload_account_name:korea">
        <position start="38290" stop="37129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37990" g_stop="37429" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="562" r_length="562" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042O06.2" gen_strand="-" ref_id="SGN-E272635" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042O06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272635" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37990" e_stop="37429"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCTTCAACTAGAATATTTCCTCTAATGAAGAAAAGCTCTGGATTGTCTCCTTCACCCGAAGTGCTTCGATTGGTTGCATCCTGTGTTGCATCAGGTCCTCCTATTGCTACTAGTTCAAGTTTCCTTGGAAATATGGTCCCTCTACCCAAATCCGTTGATCAGGTTGCTTCTTCAGACACCCAAGATTCACATGTTGCACCAGGTCCTCCTATTGCTACTAGTCCAAGTTTCCTTGGAAATATGGTCCCTCTCCCCAAATCCGTTGATCAGGTTGCTTCTTCAGACACCCAAGATTCACATGAGAAGCAGGAAACAGATCAGACCTCAGCTCCTAGTACATTGGGTCCATTCCAGGCAGAGAAAAAAGTTGAAACTAATAGCAGGGATTCTAGCAAAACACAGTCAGATTCTGCTCGAGCCAGACAGGAAGAAGTAGAGGAAATATCATCTGAAGGGACAGTCTCTGATCATCAGGAGGATGACCGTGAACCATAGCTCTTCCTTATGGGGAGCTAATTGTTGTAATCATCTCTTGAAGTGTAACTAAAGCCTCTGACCC</genome_strand>
        <mrna_strand>AATCCTTCAACTAGAATATTTCCTCTAATGAAGAAAAGCTCTGGATTGTCTCCTTCACCCGAAGTGCTTCGATTGGTTGCATCCTGTGTTGCATCAGGTCCTCCTATTGCTACTAGTTCAAGTTTCCTTGGAAATATGGTCCCTCTACCCAAATCCGTTGATCAGGTTGCTTCTTCAGACACCCAAGATTCACATGTTGCACCAGGTCCTCCTATTGCTACTAGTCCAAGTTTCCTTGGAAATATGGTCCCTCTCCCCAAATCCGTTGATCAGGTTGCTTCTTCAGACACCCAAGATTCACATGAGAAGCAGGAAACAGATCAGACCTCAGCTCCTAGTACATTGGGTCCATTCCAGGCAGAGAAAAAAGTTGAAACTAATAGCAGGGATTCTAGCAAAACACAGTCAGATTCTGCTCGAGCCAGACAGGAAGAAGTAGAGGAAATATCATCTGAAGGGACAGTCTCTGATCATCAGGAGGATGACCGTGAACCATAGCTCTTCCTTATGGGGAGCTAATTGTTGTAATCATCTCTTGAAGTGTAACTAAAGCCTCTGACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042O06-LZDxT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E476817" ref_strand="+" ref_description="SGN-E476817 [cSTB-46-E9]">
      <seq>cagttcgcatgctatatggggaggagaatccctccatccctccatttgttattccttctccccctccatctcaacccagggacccacggttgagcttgaaaaagaagaagaagaagaagaaacatggattgcaagtaatgaggcagttcccaatagattttgcaggaactattgatgtacagggtagtagcgtacatggtgagagtatggctggaacaagtagtctgcaggatccagcattccctctgctttctagagtgatggccagaacttcaggacttccttcaaatgaagctaaccttaatatgcctcctccaagtgtgactgtgaatccttcaactagtacatttcctctaatgaagacaagctctggattgtctccttcacctgaagtgcttcgcttggttgcatcctgtgtttcaccaggtccacctattgctactagttcaagtttccttggaaatatgatccctctccccaaatccgttgatcaggttgcttcttcagacacccaagattcacatgaaaagcgggaaacagatcagacctcagctcctagtacattgggtccattccaggcagagaataaagttgaaactaatagcagggattctagcaaaacacagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042O06-LZDxT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0042O06.2" temp_strand="-" temp_description="C02SLe0042O06.2  AC215455.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042O06 sequenced_by:kribb upload_account_name:korea">
        <position start="38625" stop="37285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38325" g_stop="37870" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37869" i_stop="37762" i_length="108">
            <donor d_prob="0.900" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37761" g_stop="37585" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="627" r_length="177" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042O06.2" gen_strand="-" ref_id="SGN-E476817" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042O06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E476817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38325" e_stop="37870"/>
          <exon e_start="37761" e_stop="37585"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTTCGCATGCTATATGGGGAGGAGAATCCCACCATCCCTCCATTTGTTATTCCTTCTCCCCCTCCATCTCAACCCAGGGACCCACGGTTGAGCTTGAAAAAGAAGAAGAAGAAGAAGAAGAAGAAACATGGATTGCAAGTAATGAGGCAGTTCCCAATAGATTTTGCAGGAACTATTGATGTACAGGGTAGTAGCATACATGGTGAGAGTATGGCTGGAACAAGTAGTCTGCAGGATCCGGCATTCCCTCTGCTTTCTGGAGTGATGGACAGAACTTCAGGACTTCCTTCGAATGAAGCTAACCTTAATATTCCTCCTCTAAGTGTGAATGTGAATCCTTCAACTAGAATATTTCCTCTAATGAAGAAAAGCTCTGGATTGTCTCCTTCACCCGAAGTGCTTCGATTGGTTGCATCCTGTGTTGCATCAGGTCCTCCTATTGCTACTAGTTCAAGTTTCCTTGGAAATATGGTCCCTCTACCCAAATCCGTTGATCAGGTTGCTTCTTCAGACACCCAAGATTCACATGTTGCACCAGGTCCTCCTATTGCTACTAGTCCAAGTTTCCTTGGAAATATGGTCCCTCTCCCCAAATCCGTTGATCAGGTTGCTTCTTCAGACACCCAAGATTCACATGAGAAGCAGGAAACAGATCAGACCTCAGCTCCTAGTACATTGGGTCCATTCCAGGCAGAGAAAAAAGTTGAAACTAATAGCAGGGATTCTAGCAAAACACAGT</genome_strand>
        <mrna_strand>CAGTTCGCATGCTATATGGGGAGGAGAATCCCTCCATCCCTCCATTTGTTATTCCTTCTCCCCCTCCATCTCAACCCAGGGACCCACGGTTGAGCTTG----A-AA-AAGAAGAAGAAGAAGAAGAAACATGGATTGCAAGTAATGAGGCAGTTCCCAATAGATTTTGCAGGAACTATTGATGTACAGGGTAGTAGCGTACATGGTGAGAGTATGGCTGGAACAAGTAGTCTGCAGGATCCAGCATTCCCTCTGCTTTCTAGAGTGATGGCCAGAACTTCAGGACTTCCTTCAAATGAAGCTAACCTTAATATGCCTCCTCCAAGTGTGACTGTGAATCCTTCAACTAGTACATTTCCTCTAATGAAGACAAGCTCTGGATTGTCTCCTTCACCTGAAGTGCTTCGCTTGGTTGCATCCTGTGTTTCACCAGGTCCACCTATTGCTACTAGTTCAA............................................................................................................GTTTCCTTGGAAATATGATCCCTCTCCCCAAATCCGTTGATCAGGTTGCTTCTTCAGACACCCAAGATTCACATGAAAAGCGGGAAACAGATCAGACCTCAGCTCCTAGTACATTGGGTCCATTCCAGGCAGAGAATAAAGTTGAAACTAATAGCAGGGATTCTAGCAAAACACAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042O06-LZDxT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E417090" ref_strand="+" ref_description="SGN-E417090 [STM-24-J21]">
      <seq>ggtgaatctagcaattatccatcacttcctgtacttgacaaaggtcagaaagtttctcaatcaaagggcaaggaagtggttgagtgtggttcaccgaagaataagctaccacattggcttcgtgaagcagtgaatattccagcaaaactccctgagcctgatttaccacctactgtctctgcaattgctcaatcagttcgcatgctatatggggaggagaatccctccatccctccatttgttattccttctccccctccatctcaacccagggacccacggttgagcttgaaaaagaagaagaagaagaagaaacatggattgcaagtaatgaggcagttcccaatagattttgcaggaactattgatgtacagggtagtagcgtacatggtgagagtatggctggaacaagtagtctgcaggatccagcattccctctgctttctagagtgatggccagaacttcaggacttccttcaaatgaagctaaccttaatatgcctcctccaagtgtgactgtgaatccttcaactagtacatttcctctaatgaagacaagctctggattgtctccttcacctgaagtgcttcgcttggttgcatcctgtgtttcaccaggtccacctattgctactagttcaagtttccttggaaatatgatccctctccccaaatccgttgatcaggttgcttcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042O06-LZDxT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0042O06.2" temp_strand="-" temp_description="C02SLe0042O06.2  AC215455.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042O06 sequenced_by:kribb upload_account_name:korea">
        <position start="38818" stop="37515"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38518" g_stop="37815" g_length="704"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="698" r_length="698" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042O06.2" gen_strand="-" ref_id="SGN-E417090" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042O06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E417090" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38518" e_stop="37815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGAATCTAGCAATTATCCATCACTTCCTGTACTCGATAAAGGTCAGAGAGTTTCTCAATCAAAGGGCAAGGAAGTGGTTGAGTGTAGTTCACTGAAGAATAAGCTACCACATTGGCTTCGTGAAGCAGTGAATATTCCAACAAAACTCCCTGAACCAGATTTACCACCTGCTGTCTCTGCAATTGCTCAATCAGTTCGCATGCTATATGGGGAGGAGAATCCCACCATCCCTCCATTTGTTATTCCTTCTCCCCCTCCATCTCAACCCAGGGACCCACGGTTGAGCTTGAAAAAGAAGAAGAAGAAGAAGAAGAAGAAACATGGATTGCAAGTAATGAGGCAGTTCCCAATAGATTTTGCAGGAACTATTGATGTACAGGGTAGTAGCATACATGGTGAGAGTATGGCTGGAACAAGTAGTCTGCAGGATCCGGCATTCCCTCTGCTTTCTGGAGTGATGGACAGAACTTCAGGACTTCCTTCGAATGAAGCTAACCTTAATATTCCTCCTCTAAGTGTGAATGTGAATCCTTCAACTAGAATATTTCCTCTAATGAAGAAAAGCTCTGGATTGTCTCCTTCACCCGAAGTGCTTCGATTGGTTGCATCCTGTGTTGCATCAGGTCCTCCTATTGCTACTAGTTCAAGTTTCCTTGGAAATATGGTCCCTCTACCCAAATCCGTTGATCAGGTTGCTTCTTC</genome_strand>
        <mrna_strand>GGTGAATCTAGCAATTATCCATCACTTCCTGTACTTGACAAAGGTCAGAAAGTTTCTCAATCAAAGGGCAAGGAAGTGGTTGAGTGTGGTTCACCGAAGAATAAGCTACCACATTGGCTTCGTGAAGCAGTGAATATTCCAGCAAAACTCCCTGAGCCTGATTTACCACCTACTGTCTCTGCAATTGCTCAATCAGTTCGCATGCTATATGGGGAGGAGAATCCCTCCATCCCTCCATTTGTTATTCCTTCTCCCCCTCCATCTCAACCCAGGGACCCACGGTTGAGCTTG----A-AA-AAGAAGAAGAAGAAGAAGAAACATGGATTGCAAGTAATGAGGCAGTTCCCAATAGATTTTGCAGGAACTATTGATGTACAGGGTAGTAGCGTACATGGTGAGAGTATGGCTGGAACAAGTAGTCTGCAGGATCCAGCATTCCCTCTGCTTTCTAGAGTGATGGCCAGAACTTCAGGACTTCCTTCAAATGAAGCTAACCTTAATATGCCTCCTCCAAGTGTGACTGTGAATCCTTCAACTAGTACATTTCCTCTAATGAAGACAAGCTCTGGATTGTCTCCTTCACCTGAAGTGCTTCGCTTGGTTGCATCCTGTGTTTCACCAGGTCCACCTATTGCTACTAGTTCAAGTTTCCTTGGAAATATGATCCCTCTCCCCAAATCCGTTGATCAGGTTGCTTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042O06-LZDxT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E437301" ref_strand="+" ref_description="SGN-E437301 [cSTA-3-G16]">
      <seq>ggtgaatctagcaattatccatcacttcctgtaccttgacaaaggtcagaaagtttctcaatcaaagggcaaggaagtggttgagtgtggttcaccgaagaataagctaccacattggcttcgtgaagcagtgaatattccagcaaaactccctgagcctgatttaccacctactgtctctgcaattgctcaatcagttcgcatgctatatggggaggagaatccctccatccctccatttgttattccttctccccctccatctcaacccagggacccacggttgagcttgaaaaagaagaagaagaagaagaaacatggattgcaagtaatgaggcagttcccaatagattttgcaggaactattgatgtacagggtagtagcgtacatggtgagagtatggctggaacaagtagtctgcaggatccagcattccctctgctttctagagtgatggccagaacttcaggacttccttcaaatgaagctaaccttaatatgcctcctccaagtgtgactgtgaatccttcaactagtacatttcctctaatgaagacaagctctggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042O06-LZDxT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0042O06.2" temp_strand="-" temp_description="C02SLe0042O06.2  AC215455.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042O06 sequenced_by:kribb upload_account_name:korea">
        <position start="38818" stop="37644"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38518" g_stop="37944" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="570" r_length="570" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042O06.2" gen_strand="-" ref_id="SGN-E437301" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042O06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E437301" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38518" e_stop="37944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGAATCTAGCAATTATCCATCACTTCCTGTAC-TCGATAAAGGTCAGAGAGTTTCTCAATCAAAGGGCAAGGAAGTGGTTGAGTGTAGTTCACTGAAGAATAAGCTACCACATTGGCTTCGTGAAGCAGTGAATATTCCAACAAAACTCCCTGAACCAGATTTACCACCTGCTGTCTCTGCAATTGCTCAATCAGTTCGCATGCTATATGGGGAGGAGAATCCCACCATCCCTCCATTTGTTATTCCTTCTCCCCCTCCATCTCAACCCAGGGACCCACGGTTGAGCTTGAAAAAGAAGAAGAAGAAGAAGAAGAAGAAACATGGATTGCAAGTAATGAGGCAGTTCCCAATAGATTTTGCAGGAACTATTGATGTACAGGGTAGTAGCATACATGGTGAGAGTATGGCTGGAACAAGTAGTCTGCAGGATCCGGCATTCCCTCTGCTTTCTGGAGTGATGGACAGAACTTCAGGACTTCCTTCGAATGAAGCTAACCTTAATATTCCTCCTCTAAGTGTGAATGTGAATCCTTCAACTAGAATATTTCCTCTAATGAAGAAAAGCTCTGGATT</genome_strand>
        <mrna_strand>GGTGAATCTAGCAATTATCCATCACTTCCTGTACCTTGACAAAGGTCAGAAAGTTTCTCAATCAAAGGGCAAGGAAGTGGTTGAGTGTGGTTCACCGAAGAATAAGCTACCACATTGGCTTCGTGAAGCAGTGAATATTCCAGCAAAACTCCCTGAGCCTGATTTACCACCTACTGTCTCTGCAATTGCTCAATCAGTTCGCATGCTATATGGGGAGGAGAATCCCTCCATCCCTCCATTTGTTATTCCTTCTCCCCCTCCATCTCAACCCAGGGACCCACGGTTGAGCTTG----A-AA-AAGAAGAAGAAGAAGAAGAAACATGGATTGCAAGTAATGAGGCAGTTCCCAATAGATTTTGCAGGAACTATTGATGTACAGGGTAGTAGCGTACATGGTGAGAGTATGGCTGGAACAAGTAGTCTGCAGGATCCAGCATTCCCTCTGCTTTCTAGAGTGATGGCCAGAACTTCAGGACTTCCTTCAAATGAAGCTAACCTTAATATGCCTCCTCCAAGTGTGACTGTGAATCCTTCAACTAGTACATTTCCTCTAATGAAGACAAGCTCTGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042O06-LZDxT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E455620" ref_strand="+" ref_description="SGN-E455620 [cSTS-26-H2]">
      <seq>gttaatttgcctagccttcttgacaggtctttaaatatctcacatgatttacataacaatgcgggaggtggtgaatctagcaattatccatcacttcctgtacttgataaaggtcagaaagtttctcaatcaaagggcaaggaagtggttgagtgtggttcactgaagaataagctaccacattggcttcgtgaagcagtgaaaattccagcaaaactccctgaaccggatttaccacctactgtctctgcaattgctcaatcagttcgcatgctttatggggaggagaatccctccatccctccatttgttattccttctccccctccatctcaacccagggacccacggttgagcttgaaaaagaagaagaagaagaagaaacatggattgcaagtaatgaggcagttcccaatagattttgcaggaactattgatgtacagggtagtagcgtacatggtgagagcatggctggaacaagtagtctgcaggatccagcattccctctgctttctagagtgatggccagaacttcangacttccttcgaatgaagctaaccttaatatggctcctctaagtgtgactgtgaatccttcaactagtacatttcctctaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042O06-LZDxT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0042O06.2" temp_strand="-" temp_description="C02SLe0042O06.2  AC215455.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042O06 sequenced_by:kribb upload_account_name:korea">
        <position start="38887" stop="37660"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38587" g_stop="37960" g_length="628"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="622" r_length="622" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042O06.2" gen_strand="-" ref_id="SGN-E455620" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042O06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E455620" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38587" e_stop="37960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAATTTACCTAGCCTTCTTGACAGGTCTTTAAATATCTCACATGATTCACATAACAATGCGGGAGGTGGTGAATCTAGCAATTATCCATCACTTCCTGTACTCGATAAAGGTCAGAGAGTTTCTCAATCAAAGGGCAAGGAAGTGGTTGAGTGTAGTTCACTGAAGAATAAGCTACCACATTGGCTTCGTGAAGCAGTGAATATTCCAACAAAACTCCCTGAACCAGATTTACCACCTGCTGTCTCTGCAATTGCTCAATCAGTTCGCATGCTATATGGGGAGGAGAATCCCACCATCCCTCCATTTGTTATTCCTTCTCCCCCTCCATCTCAACCCAGGGACCCACGGTTGAGCTTGAAAAAGAAGAAGAAGAAGAAGAAGAAGAAACATGGATTGCAAGTAATGAGGCAGTTCCCAATAGATTTTGCAGGAACTATTGATGTACAGGGTAGTAGCATACATGGTGAGAGTATGGCTGGAACAAGTAGTCTGCAGGATCCGGCATTCCCTCTGCTTTCTGGAGTGATGGACAGAACTTCAGGACTTCCTTCGAATGAAGCTAACCTTAATATTCCTCCTCTAAGTGTGAATGTGAATCCTTCAACTAGAATATTTCCTCTAATGA</genome_strand>
        <mrna_strand>GTTAATTTGCCTAGCCTTCTTGACAGGTCTTTAAATATCTCACATGATTTACATAACAATGCGGGAGGTGGTGAATCTAGCAATTATCCATCACTTCCTGTACTTGATAAAGGTCAGAAAGTTTCTCAATCAAAGGGCAAGGAAGTGGTTGAGTGTGGTTCACTGAAGAATAAGCTACCACATTGGCTTCGTGAAGCAGTGAAAATTCCAGCAAAACTCCCTGAACCGGATTTACCACCTACTGTCTCTGCAATTGCTCAATCAGTTCGCATGCTTTATGGGGAGGAGAATCCCTCCATCCCTCCATTTGTTATTCCTTCTCCCCCTCCATCTCAACCCAGGGACCCACGGTTGAGCTTG----A-AA-AAGAAGAAGAAGAAGAAGAAACATGGATTGCAAGTAATGAGGCAGTTCCCAATAGATTTTGCAGGAACTATTGATGTACAGGGTAGTAGCGTACATGGTGAGAGCATGGCTGGAACAAGTAGTCTGCAGGATCCAGCATTCCCTCTGCTTTCTAGAGTGATGGCCAGAACTTCANGACTTCCTTCGAATGAAGCTAACCTTAATATGGCTCCTCTAAGTGTGACTGTGAATCCTTCAACTAGTACATTTCCTCTAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042O06-LZDxT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E440412" ref_strand="+" ref_description="SGN-E440412 [cSTA-16-L19]">
      <seq>cgaggggtgaatctagcaattatccatcacttcctgtaccttgacaaaggtcagaaagtttctcaatcaaagggcaaggaagtggttgagtgtggttcaccgaagaataagctaccacattggcttcgtgaagcagtgaatattccagcaaaactccctgagcctgatttaccacctactgtctctgcaattgctcaatcagttcgcatgctatatggggaggagaatccctccatccctccatttgttattccttctccccctccatctcaacccagggacccacggttgagcttgaaaaagaagaagaagaagaagaaacatggattgcaagtaatgaggcagttcccaatagattttgcaggaactattgatgtacagggtagtagcgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042O06-LZDxT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0042O06.2" temp_strand="-" temp_description="C02SLe0042O06.2  AC215455.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042O06 sequenced_by:kribb upload_account_name:korea">
        <position start="38823" stop="37826"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38524" g_stop="38126" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="393" r_length="393" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042O06.2" gen_strand="-" ref_id="SGN-E440412" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042O06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E440412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38524" e_stop="38126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGTGGTGAATCTAGCAATTATCCATCACTTCCTGTA-CTCGATAAAGGTCAGAGAGTTTCTCAATCAAAGGGCAAGGAAGTGGTTGAGTGTAGTTCACTGAAGAATAAGCTACCACATTGGCTTCGTGAAGCAGTGAATATTCCAACAAAACTCCCTGAACCAGATTTACCACCTGCTGTCTCTGCAATTGCTCAATCAGTTCGCATGCTATATGGGGAGGAGAATCCCACCATCCCTCCATTTGTTATTCCTTCTCCCCCTCCATCTCAACCCAGGGACCCACGGTTGAGCTTGAAAAAGAAGAAGAAGAAGAAGAAGAAGAAACATGGATTGCAAGTAATGAGGCAGTTCCCAATAGATTTTGCAGGAACTATTGATGTACAGGGTAGTAGCATA</genome_strand>
        <mrna_strand>CGAGG-GGTGAATCTAGCAATTATCCATCACTTCCTGTACCTTGACAAAGGTCAGAAAGTTTCTCAATCAAAGGGCAAGGAAGTGGTTGAGTGTGGTTCACCGAAGAATAAGCTACCACATTGGCTTCGTGAAGCAGTGAATATTCCAGCAAAACTCCCTGAGCCTGATTTACCACCTACTGTCTCTGCAATTGCTCAATCAGTTCGCATGCTATATGGGGAGGAGAATCCCTCCATCCCTCCATTTGTTATTCCTTCTCCCCCTCCATCTCAACCCAGGGACCCACGGTTGAGCTTG----A-AA-AAGAAGAAGAAGAAGAAGAAACATGGATTGCAAGTAATGAGGCAGTTCCCAATAGATTTTGCAGGAACTATTGATGTACAGGGTAGTAGCGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042O06-LZDxT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E415594" ref_strand="+" ref_description="SGN-E415594 [STM-21-J11]">
      <seq>ggtgaatctagcaattatccatcacttcctgtacttgacaaaggtcagaaagtttctcaatcaaagggcaaggaagtggttgagtgtggttcaccgaagaataagctaccacattggcttcgtgaagcagtgaatattccagcaaaactccctgagccctgattaccacctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042O06-LZDxT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0042O06.2" temp_strand="-" temp_description="C02SLe0042O06.2  AC215455.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042O06 sequenced_by:kribb upload_account_name:korea">
        <position start="38818" stop="38061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38518" g_stop="38345" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042O06.2" gen_strand="-" ref_id="SGN-E415594" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>174</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042O06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E415594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38518" e_stop="38345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGAATCTAGCAATTATCCATCACTTCCTGTACTCGATAAAGGTCAGAGAGTTTCTCAATCAAAGGGCAAGGAAGTGGTTGAGTGTAGTTCACTGAAGAATAAGCTACCACATTGGCTTCGTGAAGCAGTGAATATTCCAACAAAACTCCCTGAACCAGATTTACCACCTGCT</genome_strand>
        <mrna_strand>GGTGAATCTAGCAATTATCCATCACTTCCTGTACTTGACAAAGGTCAGAAAGTTTCTCAATCAAAGGGCAAGGAAGTGGTTGAGTGTGGTTCACCGAAGAATAAGCTACCACATTGGCTTCGTGAAGCAGTGAATATTCCAGCAAAACTCCCTGAGCCCTGATTACCACCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042O06-LZDxT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E537856" ref_strand="+" ref_description="SGN-E537856 [TUS-56-K19]">
      <seq>ccctaacgagcacaaatggggacgaagcatcattcctcctccgatccaatcagcgaacccaaaaagcgccgtcgcgtcggattctctaagaccgatgccggaattgaagctaacgactgcattactatatacattgtttctagcgcagaggaagttgactccccaaacagtttctgtcttgaaccaattgacttgaatcaattttttgaagacgatggcagaatatttgggtatcagggtctcaaaatcactattttggttagcttgatatcctttcatgcttatgctgatatttctttcgaaagctcatcagatggtggtagagggattacaaacgtaaagtctgctcttgagaatatttttggtgagagtcttgttgatgaaaaagatgccttcctgaaaacattttcaactgaaagtcagtatgttcggtctgttgtctcaaatgctgaaacactgcagcataaagtttcaaaaaatggctgtagcactgaatcgaactgttcagatgtagaggtattccggatcgctggctcgcctgtagggcagctttatagtagattggtgccgcttgtactactgttagtggatggtagcaaccctattgacgtccttgatcctggatgggaaatttatctcctagtccaggcggataagttgcttggttttgcagctgtttatcgtttctatcgttatcctggcagtacacgcatgcgacttgggcagatactggttatgcctccttaccacgtaaaggttatggtcgttttcttcttgaggtgttgaacagggttgcagtgtctgaaaatgtgtacgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042O06-LZDxT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0042O06.2" temp_strand="+" temp_description="C02SLe0042O06.2  AC215455.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042O06 sequenced_by:kribb upload_account_name:korea">
        <position start="67042" stop="68461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67342" g_stop="68161" g_length="820"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="819" r_length="819" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042O06.2" gen_strand="+" ref_id="SGN-E537856" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>820</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042O06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E537856" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67342" e_stop="68161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTAACGAGCACAAATGGGGACGAAGCATCATTCCTCCTCCGATCCAATCAGCGAACCCAAAAAGCGCCGTCGCGTCGGATTCTCTAAGACCGATGCCGGAATTGAAGCTAACGACTGCATTACTATATACATTGTTTCTAGCGCAGAGGAAGTTGACTCCCCAAACAGTTTCTGTCTTGAACCAATTGACTTGAATCAATTTTTTGAAGACGATGGCAGAATATTTGGGTATCAGGGTCTCAAAATCACTATTTTGGTTAGCTTGATATCCTTTCATGCTTATGCTGATATTTCTTTCGAAAGCTCATCAGATGGTGGTAGAGGGATTACAAACGTAAAGTCTGCTCTTGAGAATATTTTTGGTGAGAGTCTTGTTGATGAAAAAGATGCCTTCCTGAAAACATTTTCAACTGAAAGTCAGTATGTTCGGTCTGTTGTCTCAAATGCTGAAACACTGCAGCATAAAGTTTCAAAAAATGGCTGTAGCACTGAATCGAACTGTTCAGATGTAGAGGTATTCCGGATCGCTGGCTCGCCTGTAGGGCAGCTTTATAGTAGATTGGTGCCGCTTGTACTACTGTTAGTGGATGGTAGCAACCCTATTGACGTCCTTGATCCTGGATGGGAAATTTATCTCCTAGTCCAGGCGGATAAGTTGCTTGGTTTTGCAGCTGTTTATCGTTTCTATCGTTATCCTGGCAGTACACGCATGCGACTTGGGCAGATACTGGTTATGCCTCCTTACCAACGTAAAGGTTATGGTCGTTTTCTTCTTGAGGTGTTGAACAGGGTTGCAGTGTCTGAAAATGTGTACGACT</genome_strand>
        <mrna_strand>CCCTAACGAGCACAAATGGGGACGAAGCATCATTCCTCCTCCGATCCAATCAGCGAACCCAAAAAGCGCCGTCGCGTCGGATTCTCTAAGACCGATGCCGGAATTGAAGCTAACGACTGCATTACTATATACATTGTTTCTAGCGCAGAGGAAGTTGACTCCCCAAACAGTTTCTGTCTTGAACCAATTGACTTGAATCAATTTTTTGAAGACGATGGCAGAATATTTGGGTATCAGGGTCTCAAAATCACTATTTTGGTTAGCTTGATATCCTTTCATGCTTATGCTGATATTTCTTTCGAAAGCTCATCAGATGGTGGTAGAGGGATTACAAACGTAAAGTCTGCTCTTGAGAATATTTTTGGTGAGAGTCTTGTTGATGAAAAAGATGCCTTCCTGAAAACATTTTCAACTGAAAGTCAGTATGTTCGGTCTGTTGTCTCAAATGCTGAAACACTGCAGCATAAAGTTTCAAAAAATGGCTGTAGCACTGAATCGAACTGTTCAGATGTAGAGGTATTCCGGATCGCTGGCTCGCCTGTAGGGCAGCTTTATAGTAGATTGGTGCCGCTTGTACTACTGTTAGTGGATGGTAGCAACCCTATTGACGTCCTTGATCCTGGATGGGAAATTTATCTCCTAGTCCAGGCGGATAAGTTGCTTGGTTTTGCAGCTGTTTATCGTTTCTATCGTTATCCTGGCAGTACACGCATGCGACTTGGGCAGATACTGGTTATGCCTCCTTACC-ACGTAAAGGTTATGGTCGTTTTCTTCTTGAGGTGTTGAACAGGGTTGCAGTGTCTGAAAATGTGTACGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042O06-LZDxT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E333162" ref_strand="+" ref_description="SGN-E333162 [cTOD-19-J22]">
      <seq>ccctaacgagcacaaatggggacgaagcatcattcctcctccgatccaatcagcgaacccaaaaagcgccgtcgcgtcggattctctaagaccgatgccggaattgaagctaacgactgcattactatatacattgtttctagcgcagaggaagttgactccccaaacagtttctgtcttgaaccaattgacttgaatcaattttttgaagacgatggcagaatatttgggtatcagggtctcaaaatcactattttggttagcttgatatcctttcatgcttatgctgatatttctttcgaaagctcatcagatggtggtagagggattacaaacgtaaagtctgctcttgagaatatttttggtgagagtcttgttgatgaaaaagatgccttcctgaaaacattttcaactgaaagtcagtatgttcggtctgttgtctcaaatgctgaaacactgcagcataaagtttcaaaaaatggctgtagcactgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042O06-LZDxT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0042O06.2" temp_strand="+" temp_description="C02SLe0042O06.2  AC215455.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042O06 sequenced_by:kribb upload_account_name:korea">
        <position start="67042" stop="68137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67342" g_stop="67837" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="496" r_length="496" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042O06.2" gen_strand="+" ref_id="SGN-E333162" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042O06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333162" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67342" e_stop="67837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTAACGAGCACAAATGGGGACGAAGCATCATTCCTCCTCCGATCCAATCAGCGAACCCAAAAAGCGCCGTCGCGTCGGATTCTCTAAGACCGATGCCGGAATTGAAGCTAACGACTGCATTACTATATACATTGTTTCTAGCGCAGAGGAAGTTGACTCCCCAAACAGTTTCTGTCTTGAACCAATTGACTTGAATCAATTTTTTGAAGACGATGGCAGAATATTTGGGTATCAGGGTCTCAAAATCACTATTTTGGTTAGCTTGATATCCTTTCATGCTTATGCTGATATTTCTTTCGAAAGCTCATCAGATGGTGGTAGAGGGATTACAAACGTAAAGTCTGCTCTTGAGAATATTTTTGGTGAGAGTCTTGTTGATGAAAAAGATGCCTTCCTGAAAACATTTTCAACTGAAAGTCAGTATGTTCGGTCTGTTGTCTCAAATGCTGAAACACTGCAGCATAAAGTTTCAAAAAATGGCTGTAGCACTGAAT</genome_strand>
        <mrna_strand>CCCTAACGAGCACAAATGGGGACGAAGCATCATTCCTCCTCCGATCCAATCAGCGAACCCAAAAAGCGCCGTCGCGTCGGATTCTCTAAGACCGATGCCGGAATTGAAGCTAACGACTGCATTACTATATACATTGTTTCTAGCGCAGAGGAAGTTGACTCCCCAAACAGTTTCTGTCTTGAACCAATTGACTTGAATCAATTTTTTGAAGACGATGGCAGAATATTTGGGTATCAGGGTCTCAAAATCACTATTTTGGTTAGCTTGATATCCTTTCATGCTTATGCTGATATTTCTTTCGAAAGCTCATCAGATGGTGGTAGAGGGATTACAAACGTAAAGTCTGCTCTTGAGAATATTTTTGGTGAGAGTCTTGTTGATGAAAAAGATGCCTTCCTGAAAACATTTTCAACTGAAAGTCAGTATGTTCGGTCTGTTGTCTCAAATGCTGAAACACTGCAGCATAAAGTTTCAAAAAATGGCTGTAGCACTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042O06-LZDxT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E265401" ref_strand="+" ref_description="SGN-E265401 [cLEI-9-A18]">
      <seq>cctaacgagcacaaatggggacgaagcatcattcctcctccgatccaatcagcgaacccaaaacgcgccgtagcgtctgattctctaagaccgatgccggaattgaagctaacgactgcattactatatacattgtttctagcgcagaggaagttgactccccaaacagtttctgtcttgaaccaattgacttgaatcaattttttgaagacgatggcggaatatttgggtatcaggggctcaaaatcactatttagggtagcttgatatcctttcatgcttatgctgatatttcttttcgaaagctcatcagatggtggtagagggattacaaacgtaaagtgtgctcttgagaatattattggtgagagtcttgtcgatgaaaaagatgcctttctgaaaacattttcaactgaaagtcagtatgtttgggctgttgtctcaaatgctgaaacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042O06-LZDxT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0042O06.2" temp_strand="+" temp_description="C02SLe0042O06.2  AC215455.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042O06 sequenced_by:kribb upload_account_name:korea">
        <position start="67043" stop="68099"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67343" g_stop="67799" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="458" r_length="458" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042O06.2" gen_strand="+" ref_id="SGN-E265401" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042O06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67343" e_stop="67799"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAACGAGCACAAATGGGGACGAAGCATCATTCCTCCTCCGATCCAATCAGCGAACCCAAAAAGCGCCGTCGCGTCGGATTCTCTAAGACCGATGCCGGAATTGAAGCTAACGACTGCATTACTATATACATTGTTTCTAGCGCAGAGGAAGTTGACTCCCCAAACAGTTTCTGTCTTGAACCAATTGACTTGAATCAATTTTTTGAAGACGATGGCAGAATATTTGGGTATCAGGGTCTCAAAATCACTATTTTGGTTAGCTTGATATCCTTTCATGCTTATGCTGATATTTC-TTTCGAAAGCTCATCAGATGGTGGTAGAGGGATTACAAACGTAAAGTCTGCTCTTGAGAATATTTTTGGTGAGAGTCTTGTTGATGAAAAAGATGCCTTCCTGAAAACATTTTCAACTGAAAGTCAGTATGTTCGGTCTGTTGTCTCAAATGCTGAAACACT</genome_strand>
        <mrna_strand>CCTAACGAGCACAAATGGGGACGAAGCATCATTCCTCCTCCGATCCAATCAGCGAACCCAAAACGCGCCGTAGCGTCTGATTCTCTAAGACCGATGCCGGAATTGAAGCTAACGACTGCATTACTATATACATTGTTTCTAGCGCAGAGGAAGTTGACTCCCCAAACAGTTTCTGTCTTGAACCAATTGACTTGAATCAATTTTTTGAAGACGATGGCGGAATATTTGGGTATCAGGGGCTCAAAATCACTATTTAGGGTAGCTTGATATCCTTTCATGCTTATGCTGATATTTCTTTTCGAAAGCTCATCAGATGGTGGTAGAGGGATTACAAACGTAAAGTGTGCTCTTGAGAATATTATTGGTGAGAGTCTTGTCGATGAAAAAGATGCCTTTCTGAAAACATTTTCAACTGAAAGTCAGTATGTTTGGGCTGTTGTCTCAAATGCTGAAACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042O06-LZDxT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E537853" ref_strand="+" ref_description="SGN-E537853 [TUS-56-K19](-)">
      <seq>tgaacagggttgcagtgtctgaaaatgtgtacgacttgacgattgaagagcctgaggattctctacaacatgttcgattatgcattgatgttgagcgtttgcttgtatttgatccagtccagcaatccctagaatcagttgtatcacatttaaagcaggaaaaactattggaaaaaagctacatgtgcaagtatgctccaccactgagtgctgttgaagatgtgaggaaaactttgaaaatcaacaagaaacagtttacgcaatgttgggatattcttatctatcttcggttggccccaattgacaaatatatggagatataccaagcaattgtttctcaccgagtaaaggctgaagttttaggtaaagattcagagggtgcagggaagcaagtgattgatgtaccaactgaacacgatcaggagatgtcatttgtgatgttcaaatcgcggaatggtcaatctagtagtagcatagagacggctgacaatcaaagtattgtggaggagcagctgcagaaactggtggatcaacgaatgaaacagatcaagttgattgctgaaaaggtttcttcgacaaaggcagctgctatgaaggcagaagtaaaatttcgacatgaaaaaaaggagtctctgtaaggttaaattagcttagtctttcaattatatatgtctgtgacttgttataactatttgatatgaggcagcattctgcattctctcttgaacaaactgttatgtgtatcttataacaatttggtatgaggcangcattgaacaaaaccattatgtgcaatcttatattgttgctattgctattgttaatgaagtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042O06-LZDxT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0042O06.2" temp_strand="+" temp_description="C02SLe0042O06.2  AC215455.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042O06 sequenced_by:kribb upload_account_name:korea">
        <position start="67826" stop="69256"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68126" g_stop="68965" g_length="840"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="842" r_length="842" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042O06.2" gen_strand="+" ref_id="SGN-E537853" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>840</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042O06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E537853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68126" e_stop="68965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAACAGGGTTGCAGTGTCTGAAAATGTGTACGACTTGACGATTGAAGAGCCTGAGGATTCTCTACAACATGTTCGATTATGCATTGATGTTGAGCGTTTGCTTGTATTTGATCCAGTCCAGCAATCCCTAGAATCAGTTGTATCACATTTAAAGCAGGAAAAACTATTGGAAAAAAGCTACATGTGCAAGTATGCTCCACCACTGAGTGCTGTTGAAGATGTGAGGAAAACTTTGAAAATCAACAAGAAACAGTTTACGCAATGTTGGGATATTCTTATCTATCTTCGGTTGGCCCCAATTGACAAATATATGGAGATATACCAAGCAATTGTTTCTCACCGAGTAAAGGCTGAAGTTTTAGGTAAAGATTCAGAGGGTGCAGGGAAGCAAGTGATTGATGTACCAACTGAACACGATCAGGAGATGTCATTTGTGATGTTCAAATCGCGGAATGGTCAATCTAGTAGTAGCATAGAGACGGCTGACAATCAAAGTATTGTGGAGGAGCAGCTGCAGAAACTGGTGGATCAACGAATGAAACAGATCAAGTTGATTGCTGAAAAGGTTTCTTCGACAAAGGCAGCTGCTATGAAGGCAGAAGTAAAATTTCGACATGAAAAAAAGGAGTCTCTGTAAGGTTAAATTAGCTTAGTCTTTCAATTATATATGTCTGTGACTTGTTATAACTATTTGATATGAGGCAGCATTCTGCATTCTCTCTTGAACAAACTGTTATGTGTATCTTATAACAATTTGGTATGAGGCA-GCATTGAACAAAA-CATTATGTGCAATCTTATATTGTTGCTATTGCTATTGTTAATGAAGTAGATTATCACTT</genome_strand>
        <mrna_strand>TGAACAGGGTTGCAGTGTCTGAAAATGTGTACGACTTGACGATTGAAGAGCCTGAGGATTCTCTACAACATGTTCGATTATGCATTGATGTTGAGCGTTTGCTTGTATTTGATCCAGTCCAGCAATCCCTAGAATCAGTTGTATCACATTTAAAGCAGGAAAAACTATTGGAAAAAAGCTACATGTGCAAGTATGCTCCACCACTGAGTGCTGTTGAAGATGTGAGGAAAACTTTGAAAATCAACAAGAAACAGTTTACGCAATGTTGGGATATTCTTATCTATCTTCGGTTGGCCCCAATTGACAAATATATGGAGATATACCAAGCAATTGTTTCTCACCGAGTAAAGGCTGAAGTTTTAGGTAAAGATTCAGAGGGTGCAGGGAAGCAAGTGATTGATGTACCAACTGAACACGATCAGGAGATGTCATTTGTGATGTTCAAATCGCGGAATGGTCAATCTAGTAGTAGCATAGAGACGGCTGACAATCAAAGTATTGTGGAGGAGCAGCTGCAGAAACTGGTGGATCAACGAATGAAACAGATCAAGTTGATTGCTGAAAAGGTTTCTTCGACAAAGGCAGCTGCTATGAAGGCAGAAGTAAAATTTCGACATGAAAAAAAGGAGTCTCTGTAAGGTTAAATTAGCTTAGTCTTTCAATTATATATGTCTGTGACTTGTTATAACTATTTGATATGAGGCAGCATTCTGCATTCTCTCTTGAACAAACTGTTATGTGTATCTTATAACAATTTGGTATGAGGCANGCATTGAACAAAACCATTATGTGCAATCTTATATTGTTGCTATTGCTATTGTTAATGAAGTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042O06-LZDxT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E232141" ref_strand="+" ref_description="SGN-E232141 [cLEL-5-C7](-)">
      <seq>aactggtggatcaacgaatgaaacagatcaagttgattgctgaaaaggtttcttcgacaaaggcagctgctatgaaggcacaagtaaaatttcgacatgaaaaaaagcagtctctgtaaggttaaattagcttagtctttcaattatatatgtctgtgacttgttataactatttgatatgaggcagcattctgcattctctcttgaacaaactgttatgtgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042O06-LZDxT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0042O06.2" temp_strand="+" temp_description="C02SLe0042O06.2  AC215455.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042O06 sequenced_by:kribb upload_account_name:korea">
        <position start="68345" stop="69168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68645" g_stop="68868" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="224" r_length="224" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042O06.2" gen_strand="+" ref_id="SGN-E232141" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>224</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042O06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68645" e_stop="68868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTGGTGGATCAACGAATGAAACAGATCAAGTTGATTGCTGAAAAGGTTTCTTCGACAAAGGCAGCTGCTATGAAGGCAGAAGTAAAATTTCGACATGAAAAAAAGGAGTCTCTGTAAGGTTAAATTAGCTTAGTCTTTCAATTATATATGTCTGTGACTTGTTATAACTATTTGATATGAGGCAGCATTCTGCATTCTCTCTTGAACAAACTGTTATGTGTA</genome_strand>
        <mrna_strand>AACTGGTGGATCAACGAATGAAACAGATCAAGTTGATTGCTGAAAAGGTTTCTTCGACAAAGGCAGCTGCTATGAAGGCACAAGTAAAATTTCGACATGAAAAAAAGCAGTCTCTGTAAGGTTAAATTAGCTTAGTCTTTCAATTATATATGTCTGTGACTTGTTATAACTATTTGATATGAGGCAGCATTCTGCATTCTCTCTTGAACAAACTGTTATGTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042O06-LZDxT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E555306" ref_strand="+" ref_description="SGN-E555306 [cTSC-1-F2]">
      <seq>tagatggataatattctttgatatgatcagttcattcattttgttgaaaccaaaattatacatagaatatctgtccaacatttactaggctctcatgagggacattgaagattacactattttccctgcatattttcctaagaaacgcgtaaatatagtcgatagcaattttcttgtagaacctagagtccctccttgctctaactacagtgtttccaagaatgtgtacaaccccagtatctctacatcgatttaagaattccatttcatccgcctctgcctggctgctctcgcggcctgatgatgtgactgtgttgttgtgcccttgagtaggagactttacaggaattattgagtccacagtcgaacatgtgtagtcattatttcctgtagttgagttgccattacttcgcagtaggtaatctgctgaatgctgagtttgctgcccgtataagctgtattcatcggagtcagagcaaccttccatcatattctccagccggacaaacaggaagaggttatcaaatagcttcctctcaaactcctcgtctttcttatggaggtccttgtaaccatacctcgcaacacaacggaacatgtgaaaactcttgggtcctatgcgcttcatgaggaacctctcgtcttctggaacagtgtacactggaagatacttcacgcagacaaatactacaactgaatgtactgctggcagattagtgatgaagtgagaaaagatatgtggcacaccactagctagctcagtgtagacaagtcctatcccagggacacgtacaagtcctaagctggggccaagtccaagaatccatgccattgataccttgctatgcatttccgattcataacgtttcacagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042O06-LZDxT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0042O06.2" temp_strand="+" temp_description="C02SLe0042O06.2  AC215455.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042O06 sequenced_by:kribb upload_account_name:korea">
        <position start="68698" stop="70173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68998" g_stop="69873" g_length="876"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="876" r_length="876" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042O06.2" gen_strand="+" ref_id="SGN-E555306" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>876</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042O06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E555306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68998" e_stop="69873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGATGGATAATATTCTTTGATATGATCAGTTCATTCATTTTGTTGAAACCAAAATTATACATAGAATATCTGTCCAACATTTAATAGGCTCTCATGAGGGACATTGAAGATTACACTATTTTCCCTGCATATTTTCCTAAGAAACGCGTAAATATAGTCGATAGCAATTTTCTTGTAGAACCTAGAGTCCCTCCTTGCTCTAACTACAGTGTTTCCAAGAATGTGTACAACCCCAGTATCTCTACATCGATTTAAGAATTCCATTTCATCCGCCTCTGCCTGGCTGCTCTCGCGGCCTGATGATGTGACTGTGTTGTTGTGCCCTTGAGTAGGAGACTTTACAGGAATTATTGAGTCCACAGTCGAACATGTGTAGTCATTATTTCCTGTAGTTGAGTTGCCATTACTTCGCAGTAGGTAATCTGCTGAATGCTGAGTTTGCTGCCCGTATAAGCTGTATTCATCGGAGTCAGAGCAACCTTCCATCATATTCTCCAGCCGGACAAACAGGAAGAGGTTATCAAATAGCTTCCTCTCAAACTCCTCGTCTTTCTTATGGAGGTCCTTGTAACCATACCTCGCAACACAACGGAACATGTGAAAACTCTTGGGTCCTATGCGCTTCATGAGGAACCTCTCGTCTTCTGGAACAGTGTACACTGGAAGATACTTCACGCAGACAAATACTACAACTGAATGTACTGCTGGCAGATTAGTGATGAAGTGAGAAAAGATATGTGGCACACCACTAGCTAGCTCAGTGTAGACAAGTCCTATCCCAGGGACACGTACAAGTCCTAAGCTGGGGCCAAGTCCAAGAATCCATGCCATTGATACCTTGCTATGCATTTCGAATTCATAACGTTTCACAGTTC</genome_strand>
        <mrna_strand>TAGATGGATAATATTCTTTGATATGATCAGTTCATTCATTTTGTTGAAACCAAAATTATACATAGAATATCTGTCCAACATTTACTAGGCTCTCATGAGGGACATTGAAGATTACACTATTTTCCCTGCATATTTTCCTAAGAAACGCGTAAATATAGTCGATAGCAATTTTCTTGTAGAACCTAGAGTCCCTCCTTGCTCTAACTACAGTGTTTCCAAGAATGTGTACAACCCCAGTATCTCTACATCGATTTAAGAATTCCATTTCATCCGCCTCTGCCTGGCTGCTCTCGCGGCCTGATGATGTGACTGTGTTGTTGTGCCCTTGAGTAGGAGACTTTACAGGAATTATTGAGTCCACAGTCGAACATGTGTAGTCATTATTTCCTGTAGTTGAGTTGCCATTACTTCGCAGTAGGTAATCTGCTGAATGCTGAGTTTGCTGCCCGTATAAGCTGTATTCATCGGAGTCAGAGCAACCTTCCATCATATTCTCCAGCCGGACAAACAGGAAGAGGTTATCAAATAGCTTCCTCTCAAACTCCTCGTCTTTCTTATGGAGGTCCTTGTAACCATACCTCGCAACACAACGGAACATGTGAAAACTCTTGGGTCCTATGCGCTTCATGAGGAACCTCTCGTCTTCTGGAACAGTGTACACTGGAAGATACTTCACGCAGACAAATACTACAACTGAATGTACTGCTGGCAGATTAGTGATGAAGTGAGAAAAGATATGTGGCACACCACTAGCTAGCTCAGTGTAGACAAGTCCTATCCCAGGGACACGTACAAGTCCTAAGCTGGGGCCAAGTCCAAGAATCCATGCCATTGATACCTTGCTATGCATTTCCGATTCATAACGTTTCACAGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042O06-LZDxT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E460031" ref_strand="+" ref_description="SGN-E460031 [cPRO-29-B8]">
      <seq>aggacttgtctacaccgagctagctagtggagtgccacatatcttttctcacttcatcacgaatctgccagctgtacattcagttgtagtatttgtctgtgtgaagtatcttccagtttacactgttccagaagacgagaggttcctcatgaagcgcataggacccaagagttttcacatgttccgttgtgttgcgaggtatggttacaaagacctccataagaaagatgaggagttcgagagaaagctatttgataacctcttcctgtttgtccggctggagaatatgatggaaggttgctctgactccgatgaatacagcttatacgggcagcaaactcagcattcagcgagttacctactgcgaagtaatggcaactcaactacaggagataatgacttcacatgttcgacagtggactcaataattcctgttaaatctcctactcaagggaacaacacagtcacatcatcaggccgtgagagcagccaggcagaagcggatgaaatggaattcttaaatcgttgtagagatgctggggttgtacacattcttggaaacactgtggttagagcaaggagggactctangttctancagaaaattgctatcgactatatatatgcgtttcttanggaaatatgcaggnnaaatagtgtaatcttcaatgtccctcatgagagcctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042O06-LZDxT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0042O06.2" temp_strand="-" temp_description="C02SLe0042O06.2  AC215455.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042O06 sequenced_by:kribb upload_account_name:korea">
        <position start="70073" stop="68783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69773" g_stop="69082" g_length="692"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="689" r_length="689" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042O06.2" gen_strand="-" ref_id="SGN-E460031" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042O06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E460031" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69773" e_stop="69082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGACTTGTCTACACTGAGCTAGCTAGTGGTGTGCCACATATCTTTTCTCACTTCATCACTAATCTGCCAGCAGTACATTCAGTTGTAGTATTTGTCTGCGTGAAGTATCTTCCAGTGTACACTGTTCCAGAAGACGAGAGGTTCCTCATGAAGCGCATAGGACCCAAGAGTTTTCACATGTTCCGTTGTGTTGCGAGGTATGGTTACAAGGACCTCCATAAGAAAGACGAGGAGTTTGAGAGGAAGCTATTTGATAACCTCTTCCTGTTTGTCCGGCTGGAGAATATGATGGAAGGTTGCTCTGACTCCGATGAATACAGCTTATACGGGCAGCAAACTCAGCATTCAGCAGATTACCTACTGCGAAGTAATGGCAACTCAACTACAGGAAATAATGACTACACATGTTCGACTGTGGACTCAATAATTCCTGTAAAGTCTCCTACTCAAGGGCACAACAACACAGTCACATCATCAGGCCGCGAGAGCAGCCAGGCAGAGGCGGATGAAATGGAATTCTTAAATCGATGTAGAGATACTGGGGTTGTACACATTCTTGGAAACACTGTAGTTAGAGCAAGGAGGGACTCTAGGTTCTACAAGAAAATTGCTATCGACTATATTTACGCGTTTCTTAGGAAAATATGCAGGGAAAATAGTGTAATCTTCAATGTCCCTCATGAGAGCCTAT</genome_strand>
        <mrna_strand>AGGACTTGTCTACACCGAGCTAGCTAGTGGAGTGCCACATATCTTTTCTCACTTCATCACGAATCTGCCAGCTGTACATTCAGTTGTAGTATTTGTCTGTGTGAAGTATCTTCCAGTTTACACTGTTCCAGAAGACGAGAGGTTCCTCATGAAGCGCATAGGACCCAAGAGTTTTCACATGTTCCGTTGTGTTGCGAGGTATGGTTACAAAGACCTCCATAAGAAAGATGAGGAGTTCGAGAGAAAGCTATTTGATAACCTCTTCCTGTTTGTCCGGCTGGAGAATATGATGGAAGGTTGCTCTGACTCCGATGAATACAGCTTATACGGGCAGCAAACTCAGCATTCAGCGAGTTACCTACTGCGAAGTAATGGCAACTCAACTACAGGAGATAATGACTTCACATGTTCGACAGTGGACTCAATAATTCCTGTTAAATCTCCTACTCAAGGG---AACAACACAGTCACATCATCAGGCCGTGAGAGCAGCCAGGCAGAAGCGGATGAAATGGAATTCTTAAATCGTTGTAGAGATGCTGGGGTTGTACACATTCTTGGAAACACTGTGGTTAGAGCAAGGAGGGACTCTANGTTCTANCAGAAAATTGCTATCGACTATATATATGCGTTTCTTANGGAAATATGCAGGNNAAATAGTGTAATCTTCAATGTCCCTCATGAGAGCCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042O06-LZDxT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E713703" ref_strand="+" ref_description="SGN-E713703 [FB09BF04]">
      <seq>cctttgacttggccccagcttaggacttgtacgtgtccctgggataggacttgtctacactgagctagctagtggtgtgccacatatcttttctcacttcatcactaatctgccagcagtacattcagttgtagtatttgtctgcgtgaagtatcttccagtgtacactgttccagaagacgagaggttcctcatgaagcgcataggacccaagagttttcacatgttccgttgtgttgcgaggtatggttacaaggacctccataagaaagacgaggagtttgagaggaagctatttgataacctcttcctgtttgtccggctggagaatatgatggaaggttgctctgactccgatgaatacagcttatacgggcagcaaactcagcattcagcagattacctactgcgaagtaatggcaactcaactacaggaaataatgactacacatgttcgactgtggactcaataattcctgtaaagtctcctactcaagggcacaacaacacagtcacatcatcaggccgcgagagcagccaggcagaggcggatgaaatggaattcttaaatcgatgtagagatactggggttgtacacattcttggaaacactgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042O06-LZDxT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0042O06.2" temp_strand="-" temp_description="C02SLe0042O06.2  AC215455.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042O06 sequenced_by:kribb upload_account_name:korea">
        <position start="70117" stop="68904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69818" g_stop="69204" g_length="615"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="615" r_length="615" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042O06.2" gen_strand="-" ref_id="SGN-E713703" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042O06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713703" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69818" e_stop="69204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTGGACTTGGCCCCAGCTTAGGACTTGTACGTGTCCCTGGGATAGGACTTGTCTACACTGAGCTAGCTAGTGGTGTGCCACATATCTTTTCTCACTTCATCACTAATCTGCCAGCAGTACATTCAGTTGTAGTATTTGTCTGCGTGAAGTATCTTCCAGTGTACACTGTTCCAGAAGACGAGAGGTTCCTCATGAAGCGCATAGGACCCAAGAGTTTTCACATGTTCCGTTGTGTTGCGAGGTATGGTTACAAGGACCTCCATAAGAAAGACGAGGAGTTTGAGAGGAAGCTATTTGATAACCTCTTCCTGTTTGTCCGGCTGGAGAATATGATGGAAGGTTGCTCTGACTCCGATGAATACAGCTTATACGGGCAGCAAACTCAGCATTCAGCAGATTACCTACTGCGAAGTAATGGCAACTCAACTACAGGAAATAATGACTACACATGTTCGACTGTGGACTCAATAATTCCTGTAAAGTCTCCTACTCAAGGGCACAACAACACAGTCACATCATCAGGCCGCGAGAGCAGCCAGGCAGAGGCGGATGAAATGGAATTCTTAAATCGATGTAGAGATACTGGGGTTGTACACATTCTTGGAAACACTGT</genome_strand>
        <mrna_strand>CCTTTGACTTGGCCCCAGCTTAGGACTTGTACGTGTCCCTGGGATAGGACTTGTCTACACTGAGCTAGCTAGTGGTGTGCCACATATCTTTTCTCACTTCATCACTAATCTGCCAGCAGTACATTCAGTTGTAGTATTTGTCTGCGTGAAGTATCTTCCAGTGTACACTGTTCCAGAAGACGAGAGGTTCCTCATGAAGCGCATAGGACCCAAGAGTTTTCACATGTTCCGTTGTGTTGCGAGGTATGGTTACAAGGACCTCCATAAGAAAGACGAGGAGTTTGAGAGGAAGCTATTTGATAACCTCTTCCTGTTTGTCCGGCTGGAGAATATGATGGAAGGTTGCTCTGACTCCGATGAATACAGCTTATACGGGCAGCAAACTCAGCATTCAGCAGATTACCTACTGCGAAGTAATGGCAACTCAACTACAGGAAATAATGACTACACATGTTCGACTGTGGACTCAATAATTCCTGTAAAGTCTCCTACTCAAGGGCACAACAACACAGTCACATCATCAGGCCGCGAGAGCAGCCAGGCAGAGGCGGATGAAATGGAATTCTTAAATCGATGTAGAGATACTGGGGTTGTACACATTCTTGGAAACACTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042O06-LZDxT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E613227" ref_strand="+" ref_description="SGN-E613227 [62999]">
      <seq>cggaactgtgaaacgttatgaatttgaaatgcacagcaaggtatcaatggcatggattcttgggcttggcgccagcttaggacttgtacgtgtccctgggataggacttgtctacaccgagctagcaagtggagtgccacatatcttttctcacttcatcacaaatctgccagctgtacattcagttgtagtatttgtctgtgtgaagtatcttccagtttacactgttccagaagacgagaggttcctcatgaagcgcataggacccaagagttttcacatgttccgttgtgttgcgaggtatggttacaaagacctccataagaaagatgaggagtttgagagaaagctatttgataacctcttcctgtttgtccggctggagaatatgatggaaggttgctccgactccgatgaatacagcttatacgggcagcaaactcagcattcagcgagttatctactgcgaagtaatggcaactcaactacaggagataatgacttcacatgttcgacagtggactcaataattcctgttaaatctcctactcaagggaacaacacagtcacatcatcagggcatgagagcagccaggcagaagcggatgaaatggaattcttaaatcgttgtagagatgctgaggttgtacaacattcttggaaaacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042O06-LZDxT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0042O06.2" temp_strand="-" temp_description="C02SLe0042O06.2  AC215455.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042O06 sequenced_by:kribb upload_account_name:korea">
        <position start="70175" stop="68907"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69875" g_stop="69207" g_length="669"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="668" r_length="668" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042O06.2" gen_strand="-" ref_id="SGN-E613227" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042O06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E613227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69875" e_stop="69207"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAACTGTGAAACGTTATGAATTCGAAATGCATAGCAAGGTATCAATGGCATGGATTCTTGGACTTGGCCCCAGCTTAGGACTTGTACGTGTCCCTGGGATAGGACTTGTCTACACTGAGCTAGCTAGTGGTGTGCCACATATCTTTTCTCACTTCATCACTAATCTGCCAGCAGTACATTCAGTTGTAGTATTTGTCTGCGTGAAGTATCTTCCAGTGTACACTGTTCCAGAAGACGAGAGGTTCCTCATGAAGCGCATAGGACCCAAGAGTTTTCACATGTTCCGTTGTGTTGCGAGGTATGGTTACAAGGACCTCCATAAGAAAGACGAGGAGTTTGAGAGGAAGCTATTTGATAACCTCTTCCTGTTTGTCCGGCTGGAGAATATGATGGAAGGTTGCTCTGACTCCGATGAATACAGCTTATACGGGCAGCAAACTCAGCATTCAGCAGATTACCTACTGCGAAGTAATGGCAACTCAACTACAGGAAATAATGACTACACATGTTCGACTGTGGACTCAATAATTCCTGTAAAGTCTCCTACTCAAGGGCACAACAACACAGTCACATCATCAGGCCGCGAGAGCAGCCAGGCAGAGGCGGATGAAATGGAATTCTTAAATCGATGTAGAGATACTGGGGTTGTAC-ACATTCTTGG-AAACAC</genome_strand>
        <mrna_strand>CGGAACTGTGAAACGTTATGAATTTGAAATGCACAGCAAGGTATCAATGGCATGGATTCTTGGGCTTGGCGCCAGCTTAGGACTTGTACGTGTCCCTGGGATAGGACTTGTCTACACCGAGCTAGCAAGTGGAGTGCCACATATCTTTTCTCACTTCATCACAAATCTGCCAGCTGTACATTCAGTTGTAGTATTTGTCTGTGTGAAGTATCTTCCAGTTTACACTGTTCCAGAAGACGAGAGGTTCCTCATGAAGCGCATAGGACCCAAGAGTTTTCACATGTTCCGTTGTGTTGCGAGGTATGGTTACAAAGACCTCCATAAGAAAGATGAGGAGTTTGAGAGAAAGCTATTTGATAACCTCTTCCTGTTTGTCCGGCTGGAGAATATGATGGAAGGTTGCTCCGACTCCGATGAATACAGCTTATACGGGCAGCAAACTCAGCATTCAGCGAGTTATCTACTGCGAAGTAATGGCAACTCAACTACAGGAGATAATGACTTCACATGTTCGACAGTGGACTCAATAATTCCTGTTAAATCTCCTACTCAAGGG---AACAACACAGTCACATCATCAGGGCATGAGAGCAGCCAGGCAGAAGCGGATGAAATGGAATTCTTAAATCGTTGTAGAGATGCTGAGGTTGTACAACATTCTTGGAAAACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042O06-LZDxT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E600842" ref_strand="+" ref_description="SGN-E600842 [53863]">
      <seq>gctatttaaggttgatcagngtggttgggttccacttgtgattgctgcagctttttttgtcatcatgtatgtctggcattacggaactgtgaaacgttatgaatttgaaatgcacagcaaggtatcaatggcatggattcttgggcttggccccagcttaggacttgtacgtgtccctgggataggacttgtctacaccgagctagcaagtggagtgccacatatcttttctcacttcatcacaaatctgccagctgtacattcagttgtagtatttgtctgtgtgaagtatcttccagtttacactgttccagaagacgagaggttcctcatgaagcgcataggacccaagagttttcacatgttccgttgtgttgcgaggtatggttacaaagacctccataagaaagatgaggagtttgagagaaagctatttgataacctcttcctgtttgtccggctggagaatatgatggaaggttgctccgactccgatgaatacagcttatacgggcagcaaactcaggcattcagcgagttatctactgcgaagtaatggcaactcaactacaggagataatgacttcacatgttcgacagtggactcaataattcctgttagatctcctactcaagggaacaacacagtcacatcatcaggccatgagagcagccaggcagaagcggatgaaatggaattcttaaatcgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042O06-LZDxT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0042O06.2" temp_strand="-" temp_description="C02SLe0042O06.2  AC215455.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042O06 sequenced_by:kribb upload_account_name:korea">
        <position start="70256" stop="68944"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69956" g_stop="69244" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="711" r_length="711" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042O06.2" gen_strand="-" ref_id="SGN-E600842" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042O06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E600842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69956" e_stop="69244"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTATTTAAGGTTGACCAGGGTGGTTGGGTTCCACTTGTGATCGCTGCAGCTTTTTTTGTCATCATGTATGTCTGGCATTACGGAACTGTGAAACGTTATGAATTCGAAATGCATAGCAAGGTATCAATGGCATGGATTCTTGGACTTGGCCCCAGCTTAGGACTTGTACGTGTCCCTGGGATAGGACTTGTCTACACTGAGCTAGCTAGTGGTGTGCCACATATCTTTTCTCACTTCATCACTAATCTGCCAGCAGTACATTCAGTTGTAGTATTTGTCTGCGTGAAGTATCTTCCAGTGTACACTGTTCCAGAAGACGAGAGGTTCCTCATGAAGCGCATAGGACCCAAGAGTTTTCACATGTTCCGTTGTGTTGCGAGGTATGGTTACAAGGACCTCCATAAGAAAGACGAGGAGTTTGAGAGGAAGCTATTTGATAACCTCTTCCTGTTTGTCCGGCTGGAGAATATGATGGAAGGTTGCTCTGACTCCGATGAATACAGCTTATACGGGCAGCAAACTCA-GCATTCAGCAGATTACCTACTGCGAAGTAATGGCAACTCAACTACAGGAAATAATGACTACACATGTTCGACTGTGGACTCAATAATTCCTGTAAAGTCTCCTACTCAAGGGCACAACAACACAGTCACATCATCAGGCCGCGAGAGCAGCCAGGCAGAGGCGGATGAAATGGAATTCTTAAATCGAT</genome_strand>
        <mrna_strand>GCTATTTAAGGTTGATCAGNGTGGTTGGGTTCCACTTGTGATTGCTGCAGCTTTTTTTGTCATCATGTATGTCTGGCATTACGGAACTGTGAAACGTTATGAATTTGAAATGCACAGCAAGGTATCAATGGCATGGATTCTTGGGCTTGGCCCCAGCTTAGGACTTGTACGTGTCCCTGGGATAGGACTTGTCTACACCGAGCTAGCAAGTGGAGTGCCACATATCTTTTCTCACTTCATCACAAATCTGCCAGCTGTACATTCAGTTGTAGTATTTGTCTGTGTGAAGTATCTTCCAGTTTACACTGTTCCAGAAGACGAGAGGTTCCTCATGAAGCGCATAGGACCCAAGAGTTTTCACATGTTCCGTTGTGTTGCGAGGTATGGTTACAAAGACCTCCATAAGAAAGATGAGGAGTTTGAGAGAAAGCTATTTGATAACCTCTTCCTGTTTGTCCGGCTGGAGAATATGATGGAAGGTTGCTCCGACTCCGATGAATACAGCTTATACGGGCAGCAAACTCAGGCATTCAGCGAGTTATCTACTGCGAAGTAATGGCAACTCAACTACAGGAGATAATGACTTCACATGTTCGACAGTGGACTCAATAATTCCTGTTAGATCTCCTACTCAAGGG---AACAACACAGTCACATCATCAGGCCATGAGAGCAGCCAGGCAGAAGCGGATGAAATGGAATTCTTAAATCGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>26</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="21122" PGL_stop="21616"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21122" e_stop="21616"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="21122" e_stop="21616" e_length="495"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21122" stop="21616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239728" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21122" stop="21432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236117" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACAGACTTTCTGGTCCATTGCCTTCATCCTTGAACAACTGCACACGATTGTGGAAAATAGACATGAATGAGAATGAGTTAGATGGAAATTTACCACCTTGGTTTGGTACACTTTCAAAGCTGATAGTCCTGAGTCTTCGGTCTAATAAATTCGATGGTGAACTAGCTCCAGAACTTTGCAAGCTCAATGATCTTCAAATCTTGGATCTTGCCAACAACAATTTGTTTGGAGCTATACCTCGGTGTGTTAACAATTTCACAGCAATGGTGAATGGAAGGAAGGAAATTAGAGACGGAGACGACGAGATGGATTATTCTTATTATGTTGGAGTTTTCAGGGAGAGTGCAAGAGTAGCAACTAAGGGTAACATGTATCAGTATGATACCATTTTGTCATTGTTTACAAGCATGGATCTTTCTAACAATAGCCTTTCTGGAAACATTCCTATGAGTCTTACAAGTCTTGTTGGATTGAGATCATTAAATTTCTCCCAC</gDNA_template>
            <first_frame> N  R  L  S  G  P  L  P  S  S  L  N  N  C  T  R  L  W  K  I  D  M  N  E  N  E  L  D  G  N  L  P  P  W  F  G  T  L  S  K  L  I  V  L  S  L  R  S  N  K  F  D  G  E  L  A  P  E  L  C  K  L  N  D  L  Q  I  L  D  L  A  N  N  N  L  F  G  A  I  P  R  C  V  N  N  F  T  A  M  V  N  G  R  K  E  I  R  D  G  D  D  E  M  D  Y  S  Y  Y  V  G  V  F  R  E  S  A  R  V  A  T  K  G  N  M  Y  Q  Y  D  T  I  L  S  L  F  T  S  M  D  L  S  N  N  S  L  S  G  N  I  P  M  S  L  T  S  L  V  G  L  R  S  L  N  F  S  H </first_frame>
            <second_frame>  T  D  F  L  V  H  C  L  H  P  *  T  T  A  H  D  C  G  K  *  T  *  M  R  M  S  *  M  E  I  Y  H  L  G  L  V  H  F  Q  S  *  *  S  *  V  F  G  L  I  N  S  M  V  N  *  L  Q  N  F  A  S  S  M  I  F  K  S  W  I  L  P  T  T  I  C  L  E  L  Y  L  G  V  L  T  I  S  Q  Q  W  *  M  E  G  R  K  L  E  T  E  T  T  R  W  I  I  L  I  M  L  E  F  S  G  R  V  Q  E  *  Q  L  R  V  T  C  I  S  M  I  P  F  C  H  C  L  Q  A  W  I  F  L  T  I  A  F  L  E  T  F  L  *  V  L  Q  V  L  L  D  *  D  H  *  I  S  P   </second_frame>
            <third_frame>   Q  T  F  W  S  I  A  F  I  L  E  Q  L  H  T  I  V  E  N  R  H  E  *  E  *  V  R  W  K  F  T  T  L  V  W  Y  T  F  K  A  D  S  P  E  S  S  V  *  *  I  R  W  *  T  S  S  R  T  L  Q  A  Q  *  S  S  N  L  G  S  C  Q  Q  Q  F  V  W  S  Y  T  S  V  C  *  Q  F  H  S  N  G  E  W  K  E  G  N  *  R  R  R  R  R  D  G  L  F  L  L  C  W  S  F  Q  G  E  C  K  S  S  N  *  G  *  H  V  S  V  *  Y  H  F  V  I  V  Y  K  H  G  S  F  *  Q  *  P  F  W  K  H  S  Y  E  S  Y  K  S  C  W  I  E  I  I  K  F  L  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0042O06.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21122" stop="21616"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>495</number_coding_nucleotides>
                  <number_encoded_amino_acids>165</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NRLSGPLPSSLNNCTRLWKIDMNENELDGNLPPWFGTLSKLIVLSLRSNKFDGELAPELCKLNDLQILDLANNNLFGAIPRCVNNFTAMVNGRKEIRDGDDEMDYSYYVGVFRESARVATKGNMYQYDTILSLFTSMDLSNNSLSGNIPMSLTSLVGLRSLNFSH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="28805" PGL_stop="27021"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28805" e_stop="28772"/>
            <exon e_start="27773" e_stop="27021"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.884" acc_prob="0.304" e_score="0.912"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.912">
            <gDNA_exon_boundary e_start="28805" e_stop="28772" e_length="34"/>
          </exon>
          <intron i_serial="1" don_prob="0.884" acc_prob="0.304">
            <gDNA_intron_boundary i_start="28771" i_stop="27774" i_length="998"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="27773" e_stop="27021" e_length="753"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28805" stop="28772"/>
              <exon start="27773" stop="27021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736289" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACACCAATTTGGAGCCCTAATTGTTAATTTTTAG : GAACAAAATTGAGTACTTGGATTGGGGGAACACATTTTACCTCAATGGTTATGGACCTTGTGCCGCCATCAGGTGATCATCACGAGAAAGAGGACTGTGGGCGGCATACTTGTGTACGAATTGAAAGTGCTAATGGAGAACTTCGTGGTACTGTCACTGCTTCGAAGAGTGTTTGCCTGGGAATAGAGAATGCAGGAACTAGTTGGAATGAAAGAACATCTAATGGCGCAAATGTACTGCCAAACACAGATTCTTTGGCTGTGAATTGCTATAGGAACTTGGAGCCTCATGATGGTATGGAATTTGACTCGAAAGAGAATGCCTTTTCACATTACAAAGAATATGCTAAGTCCATTGGATTTTCCTCAATAATAAAGGCTAGCCGTCGATCCAGAATTTCTGGAAAATTTATTGATGCAAAATTTGTTTGCAGTAGATATGGAAGTAAGCGTGAACCTTCTACTTCTGGCGCAGAACCTGTTCCAAGTACTGATGCAGCAGGAAGTAATCCCGTGAAAAGAAAAAAAGGCAGAATAAACAGGTCTTGGTCAAAAACAGATTGTAAGGCTTGCTTGCATGTAAAGAGAAGGTCTGATGGAAGGTGGGTTATTCATACTTTTGTCAAAGAGCATAACCATGAAATATTTCCGGATTGGACCAGTTATCCTCCAGGTCACAGGAACATTGATCTGGGTAAAAATGATGCAGATGCATTTCATGCTATCCGTGGGAGGACGAAAAAGACTTATGCCT</gDNA_template>
            <first_frame> T  P  I  W  S  P  N  C  *  F  L   : G  T  K  L  S  T  W  I  G  G  T  H  F  T  S  M  V  M  D  L  V  P  P  S  G  D  H  H  E  K  E  D  C  G  R  H  T  C  V  R  I  E  S  A  N  G  E  L  R  G  T  V  T  A  S  K  S  V  C  L  G  I  E  N  A  G  T  S  W  N  E  R  T  S  N  G  A  N  V  L  P  N  T  D  S  L  A  V  N  C  Y  R  N  L  E  P  H  D  G  M  E  F  D  S  K  E  N  A  F  S  H  Y  K  E  Y  A  K  S  I  G  F  S  S  I  I  K  A  S  R  R  S  R  I  S  G  K  F  I  D  A  K  F  V  C  S  R  Y  G  S  K  R  E  P  S  T  S  G  A  E  P  V  P  S  T  D  A  A  G  S  N  P  V  K  R  K  K  G  R  I  N  R  S  W  S  K  T  D  C  K  A  C  L  H  V  K  R  R  S  D  G  R  W  V  I  H  T  F  V  K  E  H  N  H  E  I  F  P  D  W  T  S  Y  P  P  G  H  R  N  I  D  L  G  K  N  D  A  D  A  F  H  A  I  R  G  R  T  K  K  T  Y  A  </first_frame>
            <second_frame>  H  Q  F  G  A  L  I  V  N  F  *  :  E  Q  N  *  V  L  G  L  G  E  H  I  L  P  Q  W  L  W  T  L  C  R  H  Q  V  I  I  T  R  K  R  T  V  G  G  I  L  V  Y  E  L  K  V  L  M  E  N  F  V  V  L  S  L  L  R  R  V  F  A  W  E  *  R  M  Q  E  L  V  G  M  K  E  H  L  M  A  Q  M  Y  C  Q  T  Q  I  L  W  L  *  I  A  I  G  T  W  S  L  M  M  V  W  N  L  T  R  K  R  M  P  F  H  I  T  K  N  M  L  S  P  L  D  F  P  Q  *  *  R  L  A  V  D  P  E  F  L  E  N  L  L  M  Q  N  L  F  A  V  D  M  E  V  S  V  N  L  L  L  L  A  Q  N  L  F  Q  V  L  M  Q  Q  E  V  I  P  *  K  E  K  K  A  E  *  T  G  L  G  Q  K  Q  I  V  R  L  A  C  M  *  R  E  G  L  M  E  G  G  L  F  I  L  L  S  K  S  I  T  M  K  Y  F  R  I  G  P  V  I  L  Q  V  T  G  T  L  I  W  V  K  M  M  Q  M  H  F  M  L  S  V  G  G  R  K  R  L  M  P </second_frame>
            <third_frame>   T  N  L  E  P  *  L  L  I  F  R :   N  K  I  E  Y  L  D  W  G  N  T  F  Y  L  N  G  Y  G  P  C  A  A  I  R  *  S  S  R  E  R  G  L  W  A  A  Y  L  C  T  N  *  K  C  *  W  R  T  S  W  Y  C  H  C  F  E  E  C  L  P  G  N  R  E  C  R  N  *  L  E  *  K  N  I  *  W  R  K  C  T  A  K  H  R  F  F  G  C  E  L  L  *  E  L  G  A  S  *  W  Y  G  I  *  L  E  R  E  C  L  F  T  L  Q  R  I  C  *  V  H  W  I  F  L  N  N  K  G  *  P  S  I  Q  N  F  W  K  I  Y  *  C  K  I  C  L  Q  *  I  W  K  *  A  *  T  F  Y  F  W  R  R  T  C  S  K  Y  *  C  S  R  K  *  S  R  E  K  K  K  R  Q  N  K  Q  V  L  V  K  N  R  L  *  G  L  L  A  C  K  E  K  V  *  W  K  V  G  Y  S  Y  F  C  Q  R  A  *  P  *  N  I  S  G  L  D  Q  L  S  S  R  S  Q  E  H  *  S  G  *  K  *  C  R  C  I  S  C  Y  P  W  E  D  E  K  D  L  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0042O06.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28778" stop="28772"/>
                    <exon start="27773" stop="27022"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>759</number_coding_nucleotides>
                  <number_encoded_amino_acids>253</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLGTKLSTWIGGTHFTSMVMDLVPPSGDHHEKEDCGRHTCVRIESANGELRGTVTASKSVCLGIENAGTSWNERTSNGANVLPNTDSLAVNCYRNLEPHDGMEFDSKENAFSHYKEYAKSIGFSSIIKASRRSRISGKFIDAKFVCSRYGSKREPSTSGAEPVPSTDAAGSNPVKRKKGRINRSWSKTDCKACLHVKRRSDGRWVIHTFVKEHNHEIFPDWTSYPPGHRNIDLGKNDADAFHAIRGRTKKTYA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="38587" PGL_stop="37122"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38587" e_stop="37122"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="38587" e_stop="37122" e_length="1466"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38587" stop="37960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455620" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38524" stop="38126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38518" stop="37815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417090" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38518" stop="37944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437301" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38518" stop="38345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37991" stop="37408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37991" stop="37408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688301" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37990" stop="37429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37909" stop="37122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373428" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37768" stop="37145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415595" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTAATTTACCTAGCCTTCTTGACAGGTCTTTAAATATCTCACATGATTCACATAACAATGCGGGAGGTGGTGAATCTAGCAATTATCCATCACTTCCTGTACTCGATAAAGGTCAGAGAGTTTCTCAATCAAAGGGCAAGGAAGTGGTTGAGTGTAGTTCACTGAAGAATAAGCTACCACATTGGCTTCGTGAAGCAGTGAATATTCCAACAAAACTCCCTGAACCAGATTTACCACCTGCTGTCTCTGCAATTGCTCAATCAGTTCGCATGCTATATGGGGAGGAGAATCCCACCATCCCTCCATTTGTTATTCCTTCTCCCCCTCCATCTCAACCCAGGGACCCACGGTTGAGCTTGAAAAAGAAGAAGAAGAAGAAGAAGAAGAAACATGGATTGCAAGTAATGAGGCAGTTCCCAATAGATTTTGCAGGAACTATTGATGTACAGGGTAGTAGCATACATGGTGAGAGTATGGCTGGAACAAGTAGTCTGCAGGATCCGGCATTCCCTCTGCTTTCTGGAGTGATGGACAGAACTTCAGGACTTCCTTCGAATGAAGCTAACCTTAATATTCCTCCTCTAAGTGTGAATGTGAATCCTTCAACTAGAATATTTCCTCTAATGAAGAAAAGCTCTGGATTGTCTCCTTCACCCGAAGTGCTTCGATTGGTTGCATCCTGTGTTGCATCAGGTCCTCCTATTGCTACTAGTTCAAGTTTCCTTGGAAATATGGTCCCTCTACCCAAATCCGTTGATCAGGTTGCTTCTTCAGACACCCAAGATTCACATGTTGCACCAGGTCCTCCTATTGCTACTAGTCCAAGTTTCCTTGGAAATATGGTCCCTCTCCCCAAATCCGTTGATCAGGTTGCTTCTTCAGACACCCAAGATTCACATGAGAAGCAGGAAACAGATCAGACCTCAGCTCCTAGTACATTGGGTCCATTCCAGGCAGAGAAAAAAGTTGAAACTAATAGCAGGGATTCTAGCAAAACACAGTCAGATTCTGCTCGAGCCAGACAGGAAGAAGTAGAGGAAATATCATCTGAAGGGACAGTCTCTGATCATCAGGAGGATGACCGTGAACCATAGCTCTTCCTTATGGGGAGCTAATTGTTGTAATCATCTCTTGAAGTGTAACTAAAGCCTCTGACCCTCCATTGTTCTCAGTTTTTGTAGGGCAGGATGCAGTTAAAGTAGCAAATACAGTACAGGTTAGACAAGTTACTATGTAAAGCTTGTGTAAGAGAAAAGAAAAACATAGAAGTTAGCATATAATATTGTTCGTCGTCCTTAGAGTCGGAGGTGTTGACCTCGTAGGACTTGTTTAGTAGCTGGGTTCAGCATTTCATTTAGGACTTCCTAAGTGTCAGAACTATGGTTCATGTAAGCAAAACTTTGCTTGGATGTATTTTATGTACTTTGCAGCAATGTTCTGTTGTTAGCTGTTGTTTATTGTACTT</gDNA_template>
            <first_frame> V  N  L  P  S  L  L  D  R  S  L  N  I  S  H  D  S  H  N  N  A  G  G  G  E  S  S  N  Y  P  S  L  P  V  L  D  K  G  Q  R  V  S  Q  S  K  G  K  E  V  V  E  C  S  S  L  K  N  K  L  P  H  W  L  R  E  A  V  N  I  P  T  K  L  P  E  P  D  L  P  P  A  V  S  A  I  A  Q  S  V  R  M  L  Y  G  E  E  N  P  T  I  P  P  F  V  I  P  S  P  P  P  S  Q  P  R  D  P  R  L  S  L  K  K  K  K  K  K  K  K  K  K  H  G  L  Q  V  M  R  Q  F  P  I  D  F  A  G  T  I  D  V  Q  G  S  S  I  H  G  E  S  M  A  G  T  S  S  L  Q  D  P  A  F  P  L  L  S  G  V  M  D  R  T  S  G  L  P  S  N  E  A  N  L  N  I  P  P  L  S  V  N  V  N  P  S  T  R  I  F  P  L  M  K  K  S  S  G  L  S  P  S  P  E  V  L  R  L  V  A  S  C  V  A  S  G  P  P  I  A  T  S  S  S  F  L  G  N  M  V  P  L  P  K  S  V  D  Q  V  A  S  S  D  T  Q  D  S  H  V  A  P  G  P  P  I  A  T  S  P  S  F  L  G  N  M  V  P  L  P  K  S  V  D  Q  V  A  S  S  D  T  Q  D  S  H  E  K  Q  E  T  D  Q  T  S  A  P  S  T  L  G  P  F  Q  A  E  K  K  V  E  T  N  S  R  D  S  S  K  T  Q  S  D  S  A  R  A  R  Q  E  E  V  E  E  I  S  S  E  G  T  V  S  D  H  Q  E  D  D  R  E  P  *  L  F  L  M  G  S  *  L  L  *  S  S  L  E  V  *  L  K  P  L  T  L  H  C  S  Q  F  L  *  G  R  M  Q  L  K  *  Q  I  Q  Y  R  L  D  K  L  L  C  K  A  C  V  R  E  K  K  N  I  E  V  S  I  *  Y  C  S  S  S  L  E  S  E  V  L  T  S  *  D  L  F  S  S  W  V  Q  H  F  I  *  D  F  L  S  V  R  T  M  V  H  V  S  K  T  L  L  G  C  I  L  C  T  L  Q  Q  C  S  V  V  S  C  C  L  L  Y   </first_frame>
            <second_frame>  L  I  Y  L  A  F  L  T  G  L  *  I  S  H  M  I  H  I  T  M  R  E  V  V  N  L  A  I  I  H  H  F  L  Y  S  I  K  V  R  E  F  L  N  Q  R  A  R  K  W  L  S  V  V  H  *  R  I  S  Y  H  I  G  F  V  K  Q  *  I  F  Q  Q  N  S  L  N  Q  I  Y  H  L  L  S  L  Q  L  L  N  Q  F  A  C  Y  M  G  R  R  I  P  P  S  L  H  L  L  F  L  L  P  L  H  L  N  P  G  T  H  G  *  A  *  K  R  R  R  R  R  R  R  R  N  M  D  C  K  *  *  G  S  S  Q  *  I  L  Q  E  L  L  M  Y  R  V  V  A  Y  M  V  R  V  W  L  E  Q  V  V  C  R  I  R  H  S  L  C  F  L  E  *  W  T  E  L  Q  D  F  L  R  M  K  L  T  L  I  F  L  L  *  V  *  M  *  I  L  Q  L  E  Y  F  L  *  *  R  K  A  L  D  C  L  L  H  P  K  C  F  D  W  L  H  P  V  L  H  Q  V  L  L  L  L  L  V  Q  V  S  L  E  I  W  S  L  Y  P  N  P  L  I  R  L  L  L  Q  T  P  K  I  H  M  L  H  Q  V  L  L  L  L  L  V  Q  V  S  L  E  I  W  S  L  S  P  N  P  L  I  R  L  L  L  Q  T  P  K  I  H  M  R  S  R  K  Q  I  R  P  Q  L  L  V  H  W  V  H  S  R  Q  R  K  K  L  K  L  I  A  G  I  L  A  K  H  S  Q  I  L  L  E  P  D  R  K  K  *  R  K  Y  H  L  K  G  Q  S  L  I  I  R  R  M  T  V  N  H  S  S  S  L  W  G  A  N  C  C  N  H  L  L  K  C  N  *  S  L  *  P  S  I  V  L  S  F  C  R  A  G  C  S  *  S  S  K  Y  S  T  G  *  T  S  Y  Y  V  K  L  V  *  E  K  R  K  T  *  K  L  A  Y  N  I  V  R  R  P  *  S  R  R  C  *  P  R  R  T  C  L  V  A  G  F  S  I  S  F  R  T  S  *  V  S  E  L  W  F  M  *  A  K  L  C  L  D  V  F  Y  V  L  C  S  N  V  L  L  L  A  V  V  Y  C  T  </second_frame>
            <third_frame>   *  F  T  *  P  S  *  Q  V  F  K  Y  L  T  *  F  T  *  Q  C  G  R  W  *  I  *  Q  L  S  I  T  S  C  T  R  *  R  S  E  S  F  S  I  K  G  Q  G  S  G  *  V  *  F  T  E  E  *  A  T  T  L  A  S  *  S  S  E  Y  S  N  K  T  P  *  T  R  F  T  T  C  C  L  C  N  C  S  I  S  S  H  A  I  W  G  G  E  S  H  H  P  S  I  C  Y  S  F  S  P  S  I  S  T  Q  G  P  T  V  E  L  E  K  E  E  E  E  E  E  E  E  T  W  I  A  S  N  E  A  V  P  N  R  F  C  R  N  Y  *  C  T  G  *  *  H  T  W  *  E  Y  G  W  N  K  *  S  A  G  S  G  I  P  S  A  F  W  S  D  G  Q  N  F  R  T  S  F  E  *  S  *  P  *  Y  S  S  S  K  C  E  C  E  S  F  N  *  N  I  S  S  N  E  E  K  L  W  I  V  S  F  T  R  S  A  S  I  G  C  I  L  C  C  I  R  S  S  Y  C  Y  *  F  K  F  P  W  K  Y  G  P  S  T  Q  I  R  *  S  G  C  F  F  R  H  P  R  F  T  C  C  T  R  S  S  Y  C  Y  *  S  K  F  P  W  K  Y  G  P  S  P  Q  I  R  *  S  G  C  F  F  R  H  P  R  F  T  *  E  A  G  N  R  S  D  L  S  S  *  Y  I  G  S  I  P  G  R  E  K  S  *  N  *  *  Q  G  F  *  Q  N  T  V  R  F  C  S  S  Q  T  G  R  S  R  G  N  I  I  *  R  D  S  L  *  S  S  G  G  *  P  *  T  I  A  L  P  Y  G  E  L  I  V  V  I  I  S  *  S  V  T  K  A  S  D  P  P  L  F  S  V  F  V  G  Q  D  A  V  K  V  A  N  T  V  Q  V  R  Q  V  T  M  *  S  L  C  K  R  K  E  K  H  R  S  *  H  I  I  L  F  V  V  L  R  V  G  G  V  D  L  V  G  L  V  *  *  L  G  S  A  F  H  L  G  L  P  K  C  Q  N  Y  G  S  C  K  Q  N  F  A  W  M  Y  F  M  Y  F  A  A  M  F  C  C  *  L  L  F  I  V  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0042O06.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38587" stop="37493"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1092</number_coding_nucleotides>
                  <number_encoded_amino_acids>364</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VNLPSLLDRSLNISHDSHNNAGGGESSNYPSLPVLDKGQRVSQSKGKEVVECSSLKNKLPHWLREAVNIPTKLPEPDLPPAVSAIAQSVRMLYGEENPTIPPFVIPSPPPSQPRDPRLSLKKKKKKKKKKHGLQVMRQFPIDFAGTIDVQGSSIHGESMAGTSSLQDPAFPLLSGVMDRTSGLPSNEANLNIPPLSVNVNPSTRIFPLMKKSSGLSPSPEVLRLVASCVASGPPIATSSSFLGNMVPLPKSVDQVASSDTQDSHVAPGPPIATSPSFLGNMVPLPKSVDQVASSDTQDSHEKQETDQTSAPSTLGPFQAEKKVETNSRDSSKTQSDSARARQEEVEEISSEGTVSDHQEDDREP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="38587" e_stop="37870"/>
            <exon e_start="37761" e_stop="37130"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.955"/>
          <exon-only e_score="0.921"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.955">
            <gDNA_exon_boundary e_start="38587" e_stop="37870" e_length="718"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="37869" i_stop="37762" i_length="108"/>
          </intron>
          <exon e_serial="2" e_score="0.921">
            <gDNA_exon_boundary e_start="37761" e_stop="37130" e_length="632"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38587" stop="37960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455620" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38524" stop="38126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38518" stop="37944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437301" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38518" stop="38345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38325" stop="37870"/>
              <exon start="37761" stop="37585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37993" stop="37870"/>
              <exon start="37761" stop="37130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E610747" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37943" stop="37870"/>
              <exon start="37761" stop="37188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611095" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTAATTTACCTAGCCTTCTTGACAGGTCTTTAAATATCTCACATGATTCACATAACAATGCGGGAGGTGGTGAATCTAGCAATTATCCATCACTTCCTGTACTCGATAAAGGTCAGAGAGTTTCTCAATCAAAGGGCAAGGAAGTGGTTGAGTGTAGTTCACTGAAGAATAAGCTACCACATTGGCTTCGTGAAGCAGTGAATATTCCAACAAAACTCCCTGAACCAGATTTACCACCTGCTGTCTCTGCAATTGCTCAATCAGTTCGCATGCTATATGGGGAGGAGAATCCCACCATCCCTCCATTTGTTATTCCTTCTCCCCCTCCATCTCAACCCAGGGACCCACGGTTGAGCTTGAAAAAGAAGAAGAAGAAGAAGAAGAAGAAACATGGATTGCAAGTAATGAGGCAGTTCCCAATAGATTTTGCAGGAACTATTGATGTACAGGGTAGTAGCATACATGGTGAGAGTATGGCTGGAACAAGTAGTCTGCAGGATCCGGCATTCCCTCTGCTTTCTGGAGTGATGGACAGAACTTCAGGACTTCCTTCGAATGAAGCTAACCTTAATATTCCTCCTCTAAGTGTGAATGTGAATCCTTCAACTAGAATATTTCCTCTAATGAAGAAAAGCTCTGGATTGTCTCCTTCACCCGAAGTGCTTCGATTGGTTGCATCCTGTGTTGCATCAGGTCCTCCTATTGCTACTAGTTCAA : GTTTCCTTGGAAATATGGTCCCTCTCCCCAAATCCGTTGATCAGGTTGCTTCTTCAGACACCCAAGATTCACATGAGAAGCAGGAAACAGATCAGACCTCAGCTCCTAGTACATTGGGTCCATTCCAGGCAGAGAAAAAAGTTGAAACTAATAGCAGGGATTCTAGCAAAACACAGTCAGATTCTGCTCGAGCCAGACAGGAAGAAGTAGAGGAAATATCATCTGAAGGGACAGTCTCTGATCATCAGGAGGATGACCGTGAACCATAGCTCTTCCTTATGGGGAGCTAATTGTTGTAATCATCTCTTGAAGTGTAACTAAAGCCTCTGACCCTCCATTGTTCTCAGTTTTTGTAGGGCAGGATGCAGTTAAAGTAGCAAATACAGTACAGGTTAGACAAGTTACTATGTAAAGCTTGTGTAAGAGAAAAGAAAAACATAGAAGTTAGCATATAATATTGTTCGTCGTCCTTAGAGTCGGAGGTGTTGACCTCGTAGGACTTGTTTAGTAGCTGGGTTCAGCATTTCATTTAGGACTTCCTAAGTGTCAGAACTATGGTTCATGTAAGCAAAACTTTGCTTGGATGTATTTTATGTACTTTGCAGCAATGTTCTGTTGTTAGCTGTTGTTTA</gDNA_template>
            <first_frame> V  N  L  P  S  L  L  D  R  S  L  N  I  S  H  D  S  H  N  N  A  G  G  G  E  S  S  N  Y  P  S  L  P  V  L  D  K  G  Q  R  V  S  Q  S  K  G  K  E  V  V  E  C  S  S  L  K  N  K  L  P  H  W  L  R  E  A  V  N  I  P  T  K  L  P  E  P  D  L  P  P  A  V  S  A  I  A  Q  S  V  R  M  L  Y  G  E  E  N  P  T  I  P  P  F  V  I  P  S  P  P  P  S  Q  P  R  D  P  R  L  S  L  K  K  K  K  K  K  K  K  K  K  H  G  L  Q  V  M  R  Q  F  P  I  D  F  A  G  T  I  D  V  Q  G  S  S  I  H  G  E  S  M  A  G  T  S  S  L  Q  D  P  A  F  P  L  L  S  G  V  M  D  R  T  S  G  L  P  S  N  E  A  N  L  N  I  P  P  L  S  V  N  V  N  P  S  T  R  I  F  P  L  M  K  K  S  S  G  L  S  P  S  P  E  V  L  R  L  V  A  S  C  V  A  S  G  P  P  I  A  T  S  S   : S  F  L  G  N  M  V  P  L  P  K  S  V  D  Q  V  A  S  S  D  T  Q  D  S  H  E  K  Q  E  T  D  Q  T  S  A  P  S  T  L  G  P  F  Q  A  E  K  K  V  E  T  N  S  R  D  S  S  K  T  Q  S  D  S  A  R  A  R  Q  E  E  V  E  E  I  S  S  E  G  T  V  S  D  H  Q  E  D  D  R  E  P  *  L  F  L  M  G  S  *  L  L  *  S  S  L  E  V  *  L  K  P  L  T  L  H  C  S  Q  F  L  *  G  R  M  Q  L  K  *  Q  I  Q  Y  R  L  D  K  L  L  C  K  A  C  V  R  E  K  K  N  I  E  V  S  I  *  Y  C  S  S  S  L  E  S  E  V  L  T  S  *  D  L  F  S  S  W  V  Q  H  F  I  *  D  F  L  S  V  R  T  M  V  H  V  S  K  T  L  L  G  C  I  L  C  T  L  Q  Q  C  S  V  V  S  C  C  L </first_frame>
            <second_frame>  L  I  Y  L  A  F  L  T  G  L  *  I  S  H  M  I  H  I  T  M  R  E  V  V  N  L  A  I  I  H  H  F  L  Y  S  I  K  V  R  E  F  L  N  Q  R  A  R  K  W  L  S  V  V  H  *  R  I  S  Y  H  I  G  F  V  K  Q  *  I  F  Q  Q  N  S  L  N  Q  I  Y  H  L  L  S  L  Q  L  L  N  Q  F  A  C  Y  M  G  R  R  I  P  P  S  L  H  L  L  F  L  L  P  L  H  L  N  P  G  T  H  G  *  A  *  K  R  R  R  R  R  R  R  R  N  M  D  C  K  *  *  G  S  S  Q  *  I  L  Q  E  L  L  M  Y  R  V  V  A  Y  M  V  R  V  W  L  E  Q  V  V  C  R  I  R  H  S  L  C  F  L  E  *  W  T  E  L  Q  D  F  L  R  M  K  L  T  L  I  F  L  L  *  V  *  M  *  I  L  Q  L  E  Y  F  L  *  *  R  K  A  L  D  C  L  L  H  P  K  C  F  D  W  L  H  P  V  L  H  Q  V  L  L  L  L  L  V  Q  :  V  S  L  E  I  W  S  L  S  P  N  P  L  I  R  L  L  L  Q  T  P  K  I  H  M  R  S  R  K  Q  I  R  P  Q  L  L  V  H  W  V  H  S  R  Q  R  K  K  L  K  L  I  A  G  I  L  A  K  H  S  Q  I  L  L  E  P  D  R  K  K  *  R  K  Y  H  L  K  G  Q  S  L  I  I  R  R  M  T  V  N  H  S  S  S  L  W  G  A  N  C  C  N  H  L  L  K  C  N  *  S  L  *  P  S  I  V  L  S  F  C  R  A  G  C  S  *  S  S  K  Y  S  T  G  *  T  S  Y  Y  V  K  L  V  *  E  K  R  K  T  *  K  L  A  Y  N  I  V  R  R  P  *  S  R  R  C  *  P  R  R  T  C  L  V  A  G  F  S  I  S  F  R  T  S  *  V  S  E  L  W  F  M  *  A  K  L  C  L  D  V  F  Y  V  L  C  S  N  V  L  L  L  A  V  V   </second_frame>
            <third_frame>   *  F  T  *  P  S  *  Q  V  F  K  Y  L  T  *  F  T  *  Q  C  G  R  W  *  I  *  Q  L  S  I  T  S  C  T  R  *  R  S  E  S  F  S  I  K  G  Q  G  S  G  *  V  *  F  T  E  E  *  A  T  T  L  A  S  *  S  S  E  Y  S  N  K  T  P  *  T  R  F  T  T  C  C  L  C  N  C  S  I  S  S  H  A  I  W  G  G  E  S  H  H  P  S  I  C  Y  S  F  S  P  S  I  S  T  Q  G  P  T  V  E  L  E  K  E  E  E  E  E  E  E  E  T  W  I  A  S  N  E  A  V  P  N  R  F  C  R  N  Y  *  C  T  G  *  *  H  T  W  *  E  Y  G  W  N  K  *  S  A  G  S  G  I  P  S  A  F  W  S  D  G  Q  N  F  R  T  S  F  E  *  S  *  P  *  Y  S  S  S  K  C  E  C  E  S  F  N  *  N  I  S  S  N  E  E  K  L  W  I  V  S  F  T  R  S  A  S  I  G  C  I  L  C  C  I  R  S  S  Y  C  Y  *  F  K :   F  P  W  K  Y  G  P  S  P  Q  I  R  *  S  G  C  F  F  R  H  P  R  F  T  *  E  A  G  N  R  S  D  L  S  S  *  Y  I  G  S  I  P  G  R  E  K  S  *  N  *  *  Q  G  F  *  Q  N  T  V  R  F  C  S  S  Q  T  G  R  S  R  G  N  I  I  *  R  D  S  L  *  S  S  G  G  *  P  *  T  I  A  L  P  Y  G  E  L  I  V  V  I  I  S  *  S  V  T  K  A  S  D  P  P  L  F  S  V  F  V  G  Q  D  A  V  K  V  A  N  T  V  Q  V  R  Q  V  T  M  *  S  L  C  K  R  K  E  K  H  R  S  *  H  I  I  L  F  V  V  L  R  V  G  G  V  D  L  V  G  L  V  *  *  L  G  S  A  F  H  L  G  L  P  K  C  Q  N  Y  G  S  C  K  Q  N  F  A  W  M  Y  F  M  Y  F  A  A  M  F  C  C  *  L  L  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0042O06.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38587" stop="37870"/>
                    <exon start="37761" stop="37493"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>984</number_coding_nucleotides>
                  <number_encoded_amino_acids>328</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VNLPSLLDRSLNISHDSHNNAGGGESSNYPSLPVLDKGQRVSQSKGKEVVECSSLKNKLPHWLREAVNIPTKLPEPDLPPAVSAIAQSVRMLYGEENPTIPPFVIPSPPPSQPRDPRLSLKKKKKKKKKKHGLQVMRQFPIDFAGTIDVQGSSIHGESMAGTSSLQDPAFPLLSGVMDRTSGLPSNEANLNIPPLSVNVNPSTRIFPLMKKSSGLSPSPEVLRLVASCVASGPPIATSSSFLGNMVPLPKSVDQVASSDTQDSHEKQETDQTSAPSTLGPFQAEKKVETNSRDSSKTQSDSARARQEEVEEISSEGTVSDHQEDDREP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="67342" PGL_stop="68965"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67342" e_stop="68965"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="67342" e_stop="68965" e_length="1624"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67342" stop="68161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537856" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67342" stop="67837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67343" stop="67799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68126" stop="68965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68645" stop="68868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232141" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCTAACGAGCACAAATGGGGACGAAGCATCATTCCTCCTCCGATCCAATCAGCGAACCCAAAAAGCGCCGTCGCGTCGGATTCTCTAAGACCGATGCCGGAATTGAAGCTAACGACTGCATTACTATATACATTGTTTCTAGCGCAGAGGAAGTTGACTCCCCAAACAGTTTCTGTCTTGAACCAATTGACTTGAATCAATTTTTTGAAGACGATGGCAGAATATTTGGGTATCAGGGTCTCAAAATCACTATTTTGGTTAGCTTGATATCCTTTCATGCTTATGCTGATATTTCTTTCGAAAGCTCATCAGATGGTGGTAGAGGGATTACAAACGTAAAGTCTGCTCTTGAGAATATTTTTGGTGAGAGTCTTGTTGATGAAAAAGATGCCTTCCTGAAAACATTTTCAACTGAAAGTCAGTATGTTCGGTCTGTTGTCTCAAATGCTGAAACACTGCAGCATAAAGTTTCAAAAAATGGCTGTAGCACTGAATCGAACTGTTCAGATGTAGAGGTATTCCGGATCGCTGGCTCGCCTGTAGGGCAGCTTTATAGTAGATTGGTGCCGCTTGTACTACTGTTAGTGGATGGTAGCAACCCTATTGACGTCCTTGATCCTGGATGGGAAATTTATCTCCTAGTCCAGGCGGATAAGTTGCTTGGTTTTGCAGCTGTTTATCGTTTCTATCGTTATCCTGGCAGTACACGCATGCGACTTGGGCAGATACTGGTTATGCCTCCTTACCAACGTAAAGGTTATGGTCGTTTTCTTCTTGAGGTGTTGAACAGGGTTGCAGTGTCTGAAAATGTGTACGACTTGACGATTGAAGAGCCTGAGGATTCTCTACAACATGTTCGATTATGCATTGATGTTGAGCGTTTGCTTGTATTTGATCCAGTCCAGCAATCCCTAGAATCAGTTGTATCACATTTAAAGCAGGAAAAACTATTGGAAAAAAGCTACATGTGCAAGTATGCTCCACCACTGAGTGCTGTTGAAGATGTGAGGAAAACTTTGAAAATCAACAAGAAACAGTTTACGCAATGTTGGGATATTCTTATCTATCTTCGGTTGGCCCCAATTGACAAATATATGGAGATATACCAAGCAATTGTTTCTCACCGAGTAAAGGCTGAAGTTTTAGGTAAAGATTCAGAGGGTGCAGGGAAGCAAGTGATTGATGTACCAACTGAACACGATCAGGAGATGTCATTTGTGATGTTCAAATCGCGGAATGGTCAATCTAGTAGTAGCATAGAGACGGCTGACAATCAAAGTATTGTGGAGGAGCAGCTGCAGAAACTGGTGGATCAACGAATGAAACAGATCAAGTTGATTGCTGAAAAGGTTTCTTCGACAAAGGCAGCTGCTATGAAGGCAGAAGTAAAATTTCGACATGAAAAAAAGGAGTCTCTGTAAGGTTAAATTAGCTTAGTCTTTCAATTATATATGTCTGTGACTTGTTATAACTATTTGATATGAGGCAGCATTCTGCATTCTCTCTTGAACAAACTGTTATGTGTATCTTATAACAATTTGGTATGAGGCAGCATTGAACAAAACATTATGTGCAATCTTATATTGTTGCTATTGCTATTGTTAATGAAGTAGATTATCACTT</gDNA_template>
            <first_frame> P  *  R  A  Q  M  G  T  K  H  H  S  S  S  D  P  I  S  E  P  K  K  R  R  R  V  G  F  S  K  T  D  A  G  I  E  A  N  D  C  I  T  I  Y  I  V  S  S  A  E  E  V  D  S  P  N  S  F  C  L  E  P  I  D  L  N  Q  F  F  E  D  D  G  R  I  F  G  Y  Q  G  L  K  I  T  I  L  V  S  L  I  S  F  H  A  Y  A  D  I  S  F  E  S  S  S  D  G  G  R  G  I  T  N  V  K  S  A  L  E  N  I  F  G  E  S  L  V  D  E  K  D  A  F  L  K  T  F  S  T  E  S  Q  Y  V  R  S  V  V  S  N  A  E  T  L  Q  H  K  V  S  K  N  G  C  S  T  E  S  N  C  S  D  V  E  V  F  R  I  A  G  S  P  V  G  Q  L  Y  S  R  L  V  P  L  V  L  L  L  V  D  G  S  N  P  I  D  V  L  D  P  G  W  E  I  Y  L  L  V  Q  A  D  K  L  L  G  F  A  A  V  Y  R  F  Y  R  Y  P  G  S  T  R  M  R  L  G  Q  I  L  V  M  P  P  Y  Q  R  K  G  Y  G  R  F  L  L  E  V  L  N  R  V  A  V  S  E  N  V  Y  D  L  T  I  E  E  P  E  D  S  L  Q  H  V  R  L  C  I  D  V  E  R  L  L  V  F  D  P  V  Q  Q  S  L  E  S  V  V  S  H  L  K  Q  E  K  L  L  E  K  S  Y  M  C  K  Y  A  P  P  L  S  A  V  E  D  V  R  K  T  L  K  I  N  K  K  Q  F  T  Q  C  W  D  I  L  I  Y  L  R  L  A  P  I  D  K  Y  M  E  I  Y  Q  A  I  V  S  H  R  V  K  A  E  V  L  G  K  D  S  E  G  A  G  K  Q  V  I  D  V  P  T  E  H  D  Q  E  M  S  F  V  M  F  K  S  R  N  G  Q  S  S  S  S  I  E  T  A  D  N  Q  S  I  V  E  E  Q  L  Q  K  L  V  D  Q  R  M  K  Q  I  K  L  I  A  E  K  V  S  S  T  K  A  A  A  M  K  A  E  V  K  F  R  H  E  K  K  E  S  L  *  G  *  I  S  L  V  F  Q  L  Y  M  S  V  T  C  Y  N  Y  L  I  *  G  S  I  L  H  S  L  L  N  K  L  L  C  V  S  Y  N  N  L  V  *  G  S  I  E  Q  N  I  M  C  N  L  I  L  L  L  L  L  L  L  M  K  *  I  I  T  </first_frame>
            <second_frame>  P  N  E  H  K  W  G  R  S  I  I  P  P  P  I  Q  S  A  N  P  K  S  A  V  A  S  D  S  L  R  P  M  P  E  L  K  L  T  T  A  L  L  Y  T  L  F  L  A  Q  R  K  L  T  P  Q  T  V  S  V  L  N  Q  L  T  *  I  N  F  L  K  T  M  A  E  Y  L  G  I  R  V  S  K  S  L  F  W  L  A  *  Y  P  F  M  L  M  L  I  F  L  S  K  A  H  Q  M  V  V  E  G  L  Q  T  *  S  L  L  L  R  I  F  L  V  R  V  L  L  M  K  K  M  P  S  *  K  H  F  Q  L  K  V  S  M  F  G  L  L  S  Q  M  L  K  H  C  S  I  K  F  Q  K  M  A  V  A  L  N  R  T  V  Q  M  *  R  Y  S  G  S  L  A  R  L  *  G  S  F  I  V  D  W  C  R  L  Y  Y  C  *  W  M  V  A  T  L  L  T  S  L  I  L  D  G  K  F  I  S  *  S  R  R  I  S  C  L  V  L  Q  L  F  I  V  S  I  V  I  L  A  V  H  A  C  D  L  G  R  Y  W  L  C  L  L  T  N  V  K  V  M  V  V  F  F  L  R  C  *  T  G  L  Q  C  L  K  M  C  T  T  *  R  L  K  S  L  R  I  L  Y  N  M  F  D  Y  A  L  M  L  S  V  C  L  Y  L  I  Q  S  S  N  P  *  N  Q  L  Y  H  I  *  S  R  K  N  Y  W  K  K  A  T  C  A  S  M  L  H  H  *  V  L  L  K  M  *  G  K  L  *  K  S  T  R  N  S  L  R  N  V  G  I  F  L  S  I  F  G  W  P  Q  L  T  N  I  W  R  Y  T  K  Q  L  F  L  T  E  *  R  L  K  F  *  V  K  I  Q  R  V  Q  G  S  K  *  L  M  Y  Q  L  N  T  I  R  R  C  H  L  *  C  S  N  R  G  M  V  N  L  V  V  A  *  R  R  L  T  I  K  V  L  W  R  S  S  C  R  N  W  W  I  N  E  *  N  R  S  S  *  L  L  K  R  F  L  R  Q  R  Q  L  L  *  R  Q  K  *  N  F  D  M  K  K  R  S  L  C  K  V  K  L  A  *  S  F  N  Y  I  C  L  *  L  V  I  T  I  *  Y  E  A  A  F  C  I  L  S  *  T  N  C  Y  V  Y  L  I  T  I  W  Y  E  A  A  L  N  K  T  L  C  A  I  L  Y  C  C  Y  C  Y  C  *  *  S  R  L  S  L </second_frame>
            <third_frame>   L  T  S  T  N  G  D  E  A  S  F  L  L  R  S  N  Q  R  T  Q  K  A  P  S  R  R  I  L  *  D  R  C  R  N  *  S  *  R  L  H  Y  Y  I  H  C  F  *  R  R  G  S  *  L  P  K  Q  F  L  S  *  T  N  *  L  E  S  I  F  *  R  R  W  Q  N  I  W  V  S  G  S  Q  N  H  Y  F  G  *  L  D  I  L  S  C  L  C  *  Y  F  F  R  K  L  I  R  W  W  *  R  D  Y  K  R  K  V  C  S  *  E  Y  F  W  *  E  S  C  *  *  K  R  C  L  P  E  N  I  F  N  *  K  S  V  C  S  V  C  C  L  K  C  *  N  T  A  A  *  S  F  K  K  W  L  *  H  *  I  E  L  F  R  C  R  G  I  P  D  R  W  L  A  C  R  A  A  L  *  *  I  G  A  A  C  T  T  V  S  G  W  *  Q  P  Y  *  R  P  *  S  W  M  G  N  L  S  P  S  P  G  G  *  V  A  W  F  C  S  C  L  S  F  L  S  L  S  W  Q  Y  T  H  A  T  W  A  D  T  G  Y  A  S  L  P  T  *  R  L  W  S  F  S  S  *  G  V  E  Q  G  C  S  V  *  K  C  V  R  L  D  D  *  R  A  *  G  F  S  T  T  C  S  I  M  H  *  C  *  A  F  A  C  I  *  S  S  P  A  I  P  R  I  S  C  I  T  F  K  A  G  K  T  I  G  K  K  L  H  V  Q  V  C  S  T  T  E  C  C  *  R  C  E  E  N  F  E  N  Q  Q  E  T  V  Y  A  M  L  G  Y  S  Y  L  S  S  V  G  P  N  *  Q  I  Y  G  D  I  P  S  N  C  F  S  P  S  K  G  *  S  F  R  *  R  F  R  G  C  R  E  A  S  D  *  C  T  N  *  T  R  S  G  D  V  I  C  D  V  Q  I  A  E  W  S  I  *  *  *  H  R  D  G  *  Q  S  K  Y  C  G  G  A  A  A  E  T  G  G  S  T  N  E  T  D  Q  V  D  C  *  K  G  F  F  D  K  G  S  C  Y  E  G  R  S  K  I  S  T  *  K  K  G  V  S  V  R  L  N  *  L  S  L  S  I  I  Y  V  C  D  L  L  *  L  F  D  M  R  Q  H  S  A  F  S  L  E  Q  T  V  M  C  I  L  *  Q  F  G  M  R  Q  H  *  T  K  H  Y  V  Q  S  Y  I  V  A  I  A  I  V  N  E  V  D  Y  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0042O06.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67348" stop="68763"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1413</number_coding_nucleotides>
                  <number_encoded_amino_acids>471</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RAQMGTKHHSSSDPISEPKKRRRVGFSKTDAGIEANDCITIYIVSSAEEVDSPNSFCLEPIDLNQFFEDDGRIFGYQGLKITILVSLISFHAYADISFESSSDGGRGITNVKSALENIFGESLVDEKDAFLKTFSTESQYVRSVVSNAETLQHKVSKNGCSTESNCSDVEVFRIAGSPVGQLYSRLVPLVLLLVDGSNPIDVLDPGWEIYLLVQADKLLGFAAVYRFYRYPGSTRMRLGQILVMPPYQRKGYGRFLLEVLNRVAVSENVYDLTIEEPEDSLQHVRLCIDVERLLVFDPVQQSLESVVSHLKQEKLLEKSYMCKYAPPLSAVEDVRKTLKINKKQFTQCWDILIYLRLAPIDKYMEIYQAIVSHRVKAEVLGKDSEGAGKQVIDVPTEHDQEMSFVMFKSRNGQSSSSIETADNQSIVEEQLQKLVDQRMKQIKLIAEKVSSTKAAAMKAEVKFRHEKKESL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="68998" PGL_stop="69873"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68998" e_stop="69873"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="68998" e_stop="69873" e_length="876"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68998" stop="69873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555306" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGATGGATAATATTCTTTGATATGATCAGTTCATTCATTTTGTTGAAACCAAAATTATACATAGAATATCTGTCCAACATTTAATAGGCTCTCATGAGGGACATTGAAGATTACACTATTTTCCCTGCATATTTTCCTAAGAAACGCGTAAATATAGTCGATAGCAATTTTCTTGTAGAACCTAGAGTCCCTCCTTGCTCTAACTACAGTGTTTCCAAGAATGTGTACAACCCCAGTATCTCTACATCGATTTAAGAATTCCATTTCATCCGCCTCTGCCTGGCTGCTCTCGCGGCCTGATGATGTGACTGTGTTGTTGTGCCCTTGAGTAGGAGACTTTACAGGAATTATTGAGTCCACAGTCGAACATGTGTAGTCATTATTTCCTGTAGTTGAGTTGCCATTACTTCGCAGTAGGTAATCTGCTGAATGCTGAGTTTGCTGCCCGTATAAGCTGTATTCATCGGAGTCAGAGCAACCTTCCATCATATTCTCCAGCCGGACAAACAGGAAGAGGTTATCAAATAGCTTCCTCTCAAACTCCTCGTCTTTCTTATGGAGGTCCTTGTAACCATACCTCGCAACACAACGGAACATGTGAAAACTCTTGGGTCCTATGCGCTTCATGAGGAACCTCTCGTCTTCTGGAACAGTGTACACTGGAAGATACTTCACGCAGACAAATACTACAACTGAATGTACTGCTGGCAGATTAGTGATGAAGTGAGAAAAGATATGTGGCACACCACTAGCTAGCTCAGTGTAGACAAGTCCTATCCCAGGGACACGTACAAGTCCTAAGCTGGGGCCAAGTCCAAGAATCCATGCCATTGATACCTTGCTATGCATTTCGAATTCATAACGTTTCACAGTTC</gDNA_template>
            <first_frame> *  M  D  N  I  L  *  Y  D  Q  F  I  H  F  V  E  T  K  I  I  H  R  I  S  V  Q  H  L  I  G  S  H  E  G  H  *  R  L  H  Y  F  P  C  I  F  S  *  E  T  R  K  Y  S  R  *  Q  F  S  C  R  T  *  S  P  S  L  L  *  L  Q  C  F  Q  E  C  V  Q  P  Q  Y  L  Y  I  D  L  R  I  P  F  H  P  P  L  P  G  C  S  R  G  L  M  M  *  L  C  C  C  A  L  E  *  E  T  L  Q  E  L  L  S  P  Q  S  N  M  C  S  H  Y  F  L  *  L  S  C  H  Y  F  A  V  G  N  L  L  N  A  E  F  A  A  R  I  S  C  I  H  R  S  Q  S  N  L  P  S  Y  S  P  A  G  Q  T  G  R  G  Y  Q  I  A  S  S  Q  T  P  R  L  S  Y  G  G  P  C  N  H  T  S  Q  H  N  G  T  C  E  N  S  W  V  L  C  A  S  *  G  T  S  R  L  L  E  Q  C  T  L  E  D  T  S  R  R  Q  I  L  Q  L  N  V  L  L  A  D  *  *  *  S  E  K  R  Y  V  A  H  H  *  L  A  Q  C  R  Q  V  L  S  Q  G  H  V  Q  V  L  S  W  G  Q  V  Q  E  S  M  P  L  I  P  C  Y  A  F  R  I  H  N  V  S  Q  F </first_frame>
            <second_frame>  R  W  I  I  F  F  D  M  I  S  S  F  I  L  L  K  P  K  L  Y  I  E  Y  L  S  N  I  *  *  A  L  M  R  D  I  E  D  Y  T  I  F  P  A  Y  F  P  K  K  R  V  N  I  V  D  S  N  F  L  V  E  P  R  V  P  P  C  S  N  Y  S  V  S  K  N  V  Y  N  P  S  I  S  T  S  I  *  E  F  H  F  I  R  L  C  L  A  A  L  A  A  *  *  C  D  C  V  V  V  P  L  S  R  R  L  Y  R  N  Y  *  V  H  S  R  T  C  V  V  I  I  S  C  S  *  V  A  I  T  S  Q  *  V  I  C  *  M  L  S  L  L  P  V  *  A  V  F  I  G  V  R  A  T  F  H  H  I  L  Q  P  D  K  Q  E  E  V  I  K  *  L  P  L  K  L  L  V  F  L  M  E  V  L  V  T  I  P  R  N  T  T  E  H  V  K  T  L  G  S  Y  A  L  H  E  E  P  L  V  F  W  N  S  V  H  W  K  I  L  H  A  D  K  Y  Y  N  *  M  Y  C  W  Q  I  S  D  E  V  R  K  D  M  W  H  T  T  S  *  L  S  V  D  K  S  Y  P  R  D  T  Y  K  S  *  A  G  A  K  S  K  N  P  C  H  *  Y  L  A  M  H  F  E  F  I  T  F  H  S   </second_frame>
            <third_frame>   D  G  *  Y  S  L  I  *  S  V  H  S  F  C  *  N  Q  N  Y  T  *  N  I  C  P  T  F  N  R  L  S  *  G  T  L  K  I  T  L  F  S  L  H  I  F  L  R  N  A  *  I  *  S  I  A  I  F  L  *  N  L  E  S  L  L  A  L  T  T  V  F  P  R  M  C  T  T  P  V  S  L  H  R  F  K  N  S  I  S  S  A  S  A  W  L  L  S  R  P  D  D  V  T  V  L  L  C  P  *  V  G  D  F  T  G  I  I  E  S  T  V  E  H  V  *  S  L  F  P  V  V  E  L  P  L  L  R  S  R  *  S  A  E  C  *  V  C  C  P  Y  K  L  Y  S  S  E  S  E  Q  P  S  I  I  F  S  S  R  T  N  R  K  R  L  S  N  S  F  L  S  N  S  S  S  F  L  W  R  S  L  *  P  Y  L  A  T  Q  R  N  M  *  K  L  L  G  P  M  R  F  M  R  N  L  S  S  S  G  T  V  Y  T  G  R  Y  F  T  Q  T  N  T  T  T  E  C  T  A  G  R  L  V  M  K  *  E  K  I  C  G  T  P  L  A  S  S  V  *  T  S  P  I  P  G  T  R  T  S  P  K  L  G  P  S  P  R  I  H  A  I  D  T  L  L  C  I  S  N  S  *  R  F  T  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0042O06.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69391" stop="69627"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSCHYFAVGNLLNAEFAARISCIHRSQSNLPSYSPAGQTGRGYQIASSQTPRLSYGGPCNHTSQHNGTCENSWVLCAS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="69956" PGL_stop="69082"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69956" e_stop="69082"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.950"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.950">
            <gDNA_exon_boundary e_start="69956" e_stop="69082" e_length="875"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69956" stop="69244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E600842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69875" stop="69207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69818" stop="69204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69773" stop="69082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460031" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTATTTAAGGTTGACCAGGGTGGTTGGGTTCCACTTGTGATCGCTGCAGCTTTTTTTGTCATCATGTATGTCTGGCATTACGGAACTGTGAAACGTTATGAATTCGAAATGCATAGCAAGGTATCAATGGCATGGATTCTTGGACTTGGCCCCAGCTTAGGACTTGTACGTGTCCCTGGGATAGGACTTGTCTACACTGAGCTAGCTAGTGGTGTGCCACATATCTTTTCTCACTTCATCACTAATCTGCCAGCAGTACATTCAGTTGTAGTATTTGTCTGCGTGAAGTATCTTCCAGTGTACACTGTTCCAGAAGACGAGAGGTTCCTCATGAAGCGCATAGGACCCAAGAGTTTTCACATGTTCCGTTGTGTTGCGAGGTATGGTTACAAGGACCTCCATAAGAAAGACGAGGAGTTTGAGAGGAAGCTATTTGATAACCTCTTCCTGTTTGTCCGGCTGGAGAATATGATGGAAGGTTGCTCTGACTCCGATGAATACAGCTTATACGGGCAGCAAACTCAGCATTCAGCAGATTACCTACTGCGAAGTAATGGCAACTCAACTACAGGAAATAATGACTACACATGTTCGACTGTGGACTCAATAATTCCTGTAAAGTCTCCTACTCAAGGGCACAACAACACAGTCACATCATCAGGCCGCGAGAGCAGCCAGGCAGAGGCGGATGAAATGGAATTCTTAAATCGATGTAGAGATACTGGGGTTGTACACATTCTTGGAAACACTGTAGTTAGAGCAAGGAGGGACTCTAGGTTCTACAAGAAAATTGCTATCGACTATATTTACGCGTTTCTTAGGAAAATATGCAGGGAAAATAGTGTAATCTTCAATGTCCCTCATGAGAGCCTAT</gDNA_template>
            <first_frame> A  I  *  G  *  P  G  W  L  G  S  T  C  D  R  C  S  F  F  C  H  H  V  C  L  A  L  R  N  C  E  T  L  *  I  R  N  A  *  Q  G  I  N  G  M  D  S  W  T  W  P  Q  L  R  T  C  T  C  P  W  D  R  T  C  L  H  *  A  S  *  W  C  A  T  Y  L  F  S  L  H  H  *  S  A  S  S  T  F  S  C  S  I  C  L  R  E  V  S  S  S  V  H  C  S  R  R  R  E  V  P  H  E  A  H  R  T  Q  E  F  S  H  V  P  L  C  C  E  V  W  L  Q  G  P  P  *  E  R  R  G  V  *  E  E  A  I  *  *  P  L  P  V  C  P  A  G  E  Y  D  G  R  L  L  *  L  R  *  I  Q  L  I  R  A  A  N  S  A  F  S  R  L  P  T  A  K  *  W  Q  L  N  Y  R  K  *  *  L  H  M  F  D  C  G  L  N  N  S  C  K  V  S  Y  S  R  A  Q  Q  H  S  H  I  I  R  P  R  E  Q  P  G  R  G  G  *  N  G  I  L  K  S  M  *  R  Y  W  G  C  T  H  S  W  K  H  C  S  *  S  K  E  G  L  *  V  L  Q  E  N  C  Y  R  L  Y  L  R  V  S  *  E  N  M  Q  G  K  *  C  N  L  Q  C  P  S  *  E  P   </first_frame>
            <second_frame>  L  F  K  V  D  Q  G  G  W  V  P  L  V  I  A  A  A  F  F  V  I  M  Y  V  W  H  Y  G  T  V  K  R  Y  E  F  E  M  H  S  K  V  S  M  A  W  I  L  G  L  G  P  S  L  G  L  V  R  V  P  G  I  G  L  V  Y  T  E  L  A  S  G  V  P  H  I  F  S  H  F  I  T  N  L  P  A  V  H  S  V  V  V  F  V  C  V  K  Y  L  P  V  Y  T  V  P  E  D  E  R  F  L  M  K  R  I  G  P  K  S  F  H  M  F  R  C  V  A  R  Y  G  Y  K  D  L  H  K  K  D  E  E  F  E  R  K  L  F  D  N  L  F  L  F  V  R  L  E  N  M  M  E  G  C  S  D  S  D  E  Y  S  L  Y  G  Q  Q  T  Q  H  S  A  D  Y  L  L  R  S  N  G  N  S  T  T  G  N  N  D  Y  T  C  S  T  V  D  S  I  I  P  V  K  S  P  T  Q  G  H  N  N  T  V  T  S  S  G  R  E  S  S  Q  A  E  A  D  E  M  E  F  L  N  R  C  R  D  T  G  V  V  H  I  L  G  N  T  V  V  R  A  R  R  D  S  R  F  Y  K  K  I  A  I  D  Y  I  Y  A  F  L  R  K  I  C  R  E  N  S  V  I  F  N  V  P  H  E  S  L  </second_frame>
            <third_frame>   Y  L  R  L  T  R  V  V  G  F  H  L  *  S  L  Q  L  F  L  S  S  C  M  S  G  I  T  E  L  *  N  V  M  N  S  K  C  I  A  R  Y  Q  W  H  G  F  L  D  L  A  P  A  *  D  L  Y  V  S  L  G  *  D  L  S  T  L  S  *  L  V  V  C  H  I  S  F  L  T  S  S  L  I  C  Q  Q  Y  I  Q  L  *  Y  L  S  A  *  S  I  F  Q  C  T  L  F  Q  K  T  R  G  S  S  *  S  A  *  D  P  R  V  F  T  C  S  V  V  L  R  G  M  V  T  R  T  S  I  R  K  T  R  S  L  R  G  S  Y  L  I  T  S  S  C  L  S  G  W  R  I  *  W  K  V  A  L  T  P  M  N  T  A  Y  T  G  S  K  L  S  I  Q  Q  I  T  Y  C  E  V  M  A  T  Q  L  Q  E  I  M  T  T  H  V  R  L  W  T  Q  *  F  L  *  S  L  L  L  K  G  T  T  T  Q  S  H  H  Q  A  A  R  A  A  R  Q  R  R  M  K  W  N  S  *  I  D  V  E  I  L  G  L  Y  T  F  L  E  T  L  *  L  E  Q  G  G  T  L  G  S  T  R  K  L  L  S  T  I  F  T  R  F  L  G  K  Y  A  G  K  I  V  *  S  S  M  S  L  M  R  A  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0042O06.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69955" stop="69083"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>873</number_coding_nucleotides>
                  <number_encoded_amino_acids>291</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFKVDQGGWVPLVIAAAFFVIMYVWHYGTVKRYEFEMHSKVSMAWILGLGPSLGLVRVPGIGLVYTELASGVPHIFSHFITNLPAVHSVVVFVCVKYLPVYTVPEDERFLMKRIGPKSFHMFRCVARYGYKDLHKKDEEFERKLFDNLFLFVRLENMMEGCSDSDEYSLYGQQTQHSADYLLRSNGNSTTGNNDYTCSTVDSIIPVKSPTQGHNNTVTSSGRESSQAEADEMEFLNRCRDTGVVHILGNTVVRARRDSRFYKKIAIDYIYAFLRKICRENSVIFNVPHESL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 137 chains have been computed
$ 
$ memory statistics:
$ 55792 bytes spliced alignments in total
$ 26 spliced alignments have been stored
$ 2145 bytes was the average size of a spliced alignment
$ 11624 bytes predicted gene locations in total
$ 6 predicted gene locations have been stored
$ 1937 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 167 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 10:51:19
-->
