<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 10:59:06"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E390278" ref_strand="+" ref_description="SGN-E390278 [TUS-40-K17]">
      <seq>aaaaggtgagtgaaatagacaagggacccaggcggttagtgatactagatcattagccagacttttcggccttcacgtgggaggcttgaaacatgagcgcgaaatttcggttggtttgagaaggcgcaaaaacagtcctctattcttatgtcccttgtttttaactactactagggttttaatcttctccggtggccgccatggaagaagttcggtctaccacagcttgggtcgctactcactcctctcatgtcaccgttgatttcacaggcattgagaaggttgctgaaaatatgaagaactcattaacaaaagtggagtgggattttgaagggattcactattttgataacgggccactcaccgttcagtatttgttggtcttggatacattgaatttctgtttctggccagatgaggagatgagttatgatcatctggcatccggattaaaggttactcttgaaagtgacaaatctgcatttgatgctgatcgtctacagaaatatactggtcctcaattaaggaaaatgttgaactggtcaagaccattgcctttggaggatgaacgagtgcgcttattgcatgaggttgggcttgagcttgagaggagctttgagggaaaggcatctaaacttgtggagtcctgcgacaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="2788" stop="5812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3088" g_stop="3357" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="270" r_length="270" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3358" i_stop="3505" i_length="148">
            <donor d_prob="0.768" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3506" g_stop="3649" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="414" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3650" i_stop="3999" i_length="350">
            <donor d_prob="0.319" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4000" g_stop="4098" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="513" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4099" i_stop="5179" i_length="1081">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5180" g_stop="5256" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="590" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5257" i_stop="5445" i_length="189">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5446" g_stop="5512" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="657" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E390278" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390278" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3088" e_stop="3357"/>
          <exon e_start="3506" e_stop="3649"/>
          <exon e_start="4000" e_stop="4098"/>
          <exon e_start="5180" e_stop="5256"/>
          <exon e_start="5446" e_stop="5512"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGTGAGTGAAATAGACAAGGGACCCAGGCGGTTAGTGATACTAGATCATTAGCCAGACTTTTCGGCCTTCACGTGGGAGGCTTGAAACATGAGCGCGAAATTTCGGTTGGTTTGAGAAGGCGCAAAAACAGTCCTCTATTCTTATGTCCCTTGTTTTTAACTACTACTAGGGTTTTAATCTTCTCCGGTGGCCGCCATGGAAGAAGTTCGGTCTACCACAGCTTGGGTCGCTACTCACTCCTCTCATGTCACCGTTGATTTCACAGGTCCCTCAGCATTCTCTCCGTGTTTCCCATTACGTTAATCCAATGCACTTCCGTTACTAATTTTCTTTTAATCTCAAATTATTTAGAGTCTGTTATTTGGCTTGTATTTGATAGTATAAGATTACATTTTGGTATGTGTTATATGCAGGCATTGAGAAGGTTGCTGAAAATATGAAGAACTCATTAACAAAAGTGGAGTGGGATTTTGAAGGGATTCACTATTTTGATAACGGGCCACTCACCGTTCAGTATTTGTTGGTCTTGGATACATTGAATTTCTGTTTCTGGCCAGGTACCTTAATAAGTTTATCGTTAAGGAAGCAGTAAACAGCCTTGTAAATTATTCAGATGCTAAACTTGTGAAATTGCTTTAATATTATTTGTCTTTAAGCTATATTTCTTATAAATGAATGACATAAGTGCTGGGAAACTTCAGTGTTGTACTTGGTCAAAATGTCAGAAGTATCTTCTAACTTTTTATCCTTGAACTCGCACATTTATGTTGATCAAGAAAATTTGTAATACAGAACCGTATTCATGATGCTTGTTAGGGCTTATTTAAAGGTTCTTATAGCAGTTTTTATTTCAGTTGTTTGAAAATATGCTCTGGTGTATTGACCTTTAACTTGCATCTAATTGCAGATGAGGAGATGAGTTATGATCATCTGGCATCCGGATTAAAGGTTACTCTTGAAAGTGACAAATCTGCATTTGATGCTGATCGTCTACAGAAATATACTGGTAAGCAGGTTTCTTTGAGACTCTGCCTTTTGGATTTTTTTTTTACTTTGCCTACTCCACCCATTGCGTGAGGAAAGCCTTCTAGTAGTGGCATGAGACTGTTGGCATCCAGTGATGCACTCGGGGGCTATGTGATGTTCACTGAACAGTCTCTCAATTCGTATATAAAAGTGGTCCCTTAAGAATGCGAATGATGTCCACTTTTTCTTTTGAATACCCATCTTATAATTTAATCCCTTTCAATCCAACTAACTACAATCTATGGGAATGCCTTTGTGATCATTAACTTTAAGGTCCTCATTTAACTATTACAAGTGAGGTAATCCAAGATCCAAAACTTGTTATCATTTTTTAGCCTTTAGTTAAAATTTTCTATTGTTGTTGAAGTAGCTCATTATTCGACAAAAAATATTGTGATAAATCCTAGTTTAGAATCTCTGGCATGACACTCACTCTCTTAAATCTTTAGAATTTAACTCCTATTGCAATTTATTCCACGTCTCAAGGTTAAGTCAGGAGATTGAAAAGAATTAAAATTTGATGCAGCAATAGAGACACATAAGATTAATAAAGTATAAAAGGGATCATAACTGATGTAGCAATAAAGACTCGTGAGATTAATAAACTATTAGGGCCAGAACAGAATAATTTTTTTTATGACAAGGGAAACCTGCAGCTGCTACTCTTCGGGTGCACACAAAATAAAACCCCTACTCATGTGCAATAGCTCGCAAACCACACAGGAGAGTAATCCGCATTAGAAAAGCCTGATGCGATAAGCTCGATGGGAAACCCCTTGCTTTTGCTGGCAAGGGGTTTCGAACTTGAGACCTCCAACATGGAAGTCCCAAGCCCAAACCACATGGCCACGGGCCATCCCAAAGGGTAGCTAGAGGAGAACATTACCTTGAAAGCATCTTCGTTGGTTATGTTTGTGTTCAGCAAGTCTTTATGTTAAGCAACTCACGGGTTCAATTTATATAGTTTGACAAATGTCTTGAATGTTTTGAGTTCTGAAATCTTATAACCTTTCCCTTTGTACTTGTTTGAAGATAATCTCATTGCAAACACCATTTTTTAGGTCCTCAATTAAGGAAAATGTTGAACTGGTCAAGACCATTGCCTTTGGAGGATGAACGAGTGCGCTTATTGCATGAGGTACACTTCTTAATTCTTGATTTGGTGTTCTATGCACTCTTTTAATGCTTCGGCAGGTGATAATTATTTTTTTTTTGCATTATGTGCATTCTCTTAATGTTCAGAAGTCGTAATTTGCTGTGACTTATAATAATGTGTGATCTCTTAAGCTTGTTAGTGAGCTAATAGCTCTGTGGAATAATGGTTAAGGTTGGGCTTGAGCTTGAGAGGAGCTTTGAGGGAAAGGCATCTAAACTTGTGGAGTCCTGCGACAACT</genome_strand>
        <mrna_strand>AAAAGGTGAGTGAAATAGACAAGGGACCCAGGCGGTTAGTGATACTAGATCATTAGCCAGACTTTTCGGCCTTCACGTGGGAGGCTTGAAACATGAGCGCGAAATTTCGGTTGGTTTGAGAAGGCGCAAAAACAGTCCTCTATTCTTATGTCCCTTGTTTTTAACTACTACTAGGGTTTTAATCTTCTCCGGTGGCCGCCATGGAAGAAGTTCGGTCTACCACAGCTTGGGTCGCTACTCACTCCTCTCATGTCACCGTTGATTTCACAG....................................................................................................................................................GCATTGAGAAGGTTGCTGAAAATATGAAGAACTCATTAACAAAAGTGGAGTGGGATTTTGAAGGGATTCACTATTTTGATAACGGGCCACTCACCGTTCAGTATTTGTTGGTCTTGGATACATTGAATTTCTGTTTCTGGCCAG..............................................................................................................................................................................................................................................................................................................................................................ATGAGGAGATGAGTTATGATCATCTGGCATCCGGATTAAAGGTTACTCTTGAAAGTGACAAATCTGCATTTGATGCTGATCGTCTACAGAAATATACTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTCAATTAAGGAAAATGTTGAACTGGTCAAGACCATTGCCTTTGGAGGATGAACGAGTGCGCTTATTGCATGAG.............................................................................................................................................................................................GTTGGGCTTGAGCTTGAGAGGAGCTTTGAGGGAAAGGCATCTAAACTTGTGGAGTCCTGCGACAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E390182" ref_strand="+" ref_description="SGN-E390182 [TUS-41-K17]">
      <seq>atcatgtgattgacatacacaagggacacaactggtcatcgacactatatcattatacaaacctttcggccttcacgtgagaggcttgacacatgaacgcgaaatttcggttggtttgagaaggcgcaaaaacagtcctctattcttatgtcccttgtttttaactactactagggttttaatcttcaccggtggccgccatggaagaagttcggtctaccacagcttgggtcgctactcactcctctcatgtcaccgttgatttcacaggcattgagaaggttgctgaaaatatgacgaactcattaacaacagtggagtgggattttgaagggattcactattttgataacgggccactcaccgtacagtatttgttggtcttggatacattgaatttctgtttctggccagatgaggagatgagttatgatcatctggaatccggattaaaggttactcttgaaagtgacaaatctgcatttgatgctgatcgtctacagaaatatactggtcctcgattaaggaaaatgttgaactggtcaaagaccattgcctttggaggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="2821" stop="5532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3093" g_stop="3357" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="270" r_length="265" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3358" i_stop="3505" i_length="148">
            <donor d_prob="0.768" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3506" g_stop="3649" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="414" r_length="144" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3650" i_stop="3999" i_length="350">
            <donor d_prob="0.319" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4000" g_stop="4098" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="513" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4099" i_stop="5179" i_length="1081">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5180" g_stop="5232" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="567" r_length="54" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E390182" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390182" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3093" e_stop="3357"/>
          <exon e_start="3506" e_stop="3649"/>
          <exon e_start="4000" e_stop="4098"/>
          <exon e_start="5180" e_stop="5232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAGTGAAATAGACAAGGGACCCAGGCGGTTAGTGATACTAGATCATTAGCCAGACTTTTCGGCCTTCACGTGGGAGGCTTGAAACATGAGCGCGAAATTTCGGTTGGTTTGAGAAGGCGCAAAAACAGTCCTCTATTCTTATGTCCCTTGTTTTTAACTACTACTAGGGTTTTAATCTTCTCCGGTGGCCGCCATGGAAGAAGTTCGGTCTACCACAGCTTGGGTCGCTACTCACTCCTCTCATGTCACCGTTGATTTCACAGGTCCCTCAGCATTCTCTCCGTGTTTCCCATTACGTTAATCCAATGCACTTCCGTTACTAATTTTCTTTTAATCTCAAATTATTTAGAGTCTGTTATTTGGCTTGTATTTGATAGTATAAGATTACATTTTGGTATGTGTTATATGCAGGCATTGAGAAGGTTGCTGAAAATATGAAGAACTCATTAACAAAAGTGGAGTGGGATTTTGAAGGGATTCACTATTTTGATAACGGGCCACTCACCGTTCAGTATTTGTTGGTCTTGGATACATTGAATTTCTGTTTCTGGCCAGGTACCTTAATAAGTTTATCGTTAAGGAAGCAGTAAACAGCCTTGTAAATTATTCAGATGCTAAACTTGTGAAATTGCTTTAATATTATTTGTCTTTAAGCTATATTTCTTATAAATGAATGACATAAGTGCTGGGAAACTTCAGTGTTGTACTTGGTCAAAATGTCAGAAGTATCTTCTAACTTTTTATCCTTGAACTCGCACATTTATGTTGATCAAGAAAATTTGTAATACAGAACCGTATTCATGATGCTTGTTAGGGCTTATTTAAAGGTTCTTATAGCAGTTTTTATTTCAGTTGTTTGAAAATATGCTCTGGTGTATTGACCTTTAACTTGCATCTAATTGCAGATGAGGAGATGAGTTATGATCATCTGGCATCCGGATTAAAGGTTACTCTTGAAAGTGACAAATCTGCATTTGATGCTGATCGTCTACAGAAATATACTGGTAAGCAGGTTTCTTTGAGACTCTGCCTTTTGGATTTTTTTTTTACTTTGCCTACTCCACCCATTGCGTGAGGAAAGCCTTCTAGTAGTGGCATGAGACTGTTGGCATCCAGTGATGCACTCGGGGGCTATGTGATGTTCACTGAACAGTCTCTCAATTCGTATATAAAAGTGGTCCCTTAAGAATGCGAATGATGTCCACTTTTTCTTTTGAATACCCATCTTATAATTTAATCCCTTTCAATCCAACTAACTACAATCTATGGGAATGCCTTTGTGATCATTAACTTTAAGGTCCTCATTTAACTATTACAAGTGAGGTAATCCAAGATCCAAAACTTGTTATCATTTTTTAGCCTTTAGTTAAAATTTTCTATTGTTGTTGAAGTAGCTCATTATTCGACAAAAAATATTGTGATAAATCCTAGTTTAGAATCTCTGGCATGACACTCACTCTCTTAAATCTTTAGAATTTAACTCCTATTGCAATTTATTCCACGTCTCAAGGTTAAGTCAGGAGATTGAAAAGAATTAAAATTTGATGCAGCAATAGAGACACATAAGATTAATAAAGTATAAAAGGGATCATAACTGATGTAGCAATAAAGACTCGTGAGATTAATAAACTATTAGGGCCAGAACAGAATAATTTTTTTTATGACAAGGGAAACCTGCAGCTGCTACTCTTCGGGTGCACACAAAATAAAACCCCTACTCATGTGCAATAGCTCGCAAACCACACAGGAGAGTAATCCGCATTAGAAAAGCCTGATGCGATAAGCTCGATGGGAAACCCCTTGCTTTTGCTGGCAAGGGGTTTCGAACTTGAGACCTCCAACATGGAAGTCCCAAGCCCAAACCACATGGCCACGGGCCATCCCAAAGGGTAGCTAGAGGAGAACATTACCTTGAAAGCATCTTCGTTGGTTATGTTTGTGTTCAGCAAGTCTTTATGTTAAGCAACTCACGGGTTCAATTTATATAGTTTGACAAATGTCTTGAATGTTTTGAGTTCTGAAATCTTATAACCTTTCCCTTTGTACTTGTTTGAAGATAATCTCATTGCAAACACCATTTTTTAGGTCCTCAATTAAGGAAAATGTTGAACTGGTC-AAGACCATTGCCTTTGGAGGAT</genome_strand>
        <mrna_strand>GTGATTGACATACACAAGGGACACAACTGGTCATCGACACTATATCATTATACAAACCTTTCGGCCTTCACGTGAGAGGCTTGACACATGAACGCGAAATTTCGGTTGGTTTGAGAAGGCGCAAAAACAGTCCTCTATTCTTATGTCCCTTGTTTTTAACTACTACTAGGGTTTTAATCTTCACCGGTGGCCGCCATGGAAGAAGTTCGGTCTACCACAGCTTGGGTCGCTACTCACTCCTCTCATGTCACCGTTGATTTCACAG....................................................................................................................................................GCATTGAGAAGGTTGCTGAAAATATGACGAACTCATTAACAACAGTGGAGTGGGATTTTGAAGGGATTCACTATTTTGATAACGGGCCACTCACCGTACAGTATTTGTTGGTCTTGGATACATTGAATTTCTGTTTCTGGCCAG..............................................................................................................................................................................................................................................................................................................................................................ATGAGGAGATGAGTTATGATCATCTGGAATCCGGATTAAAGGTTACTCTTGAAAGTGACAAATCTGCATTTGATGCTGATCGTCTACAGAAATATACTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTCGATTAAGGAAAATGTTGAACTGGTCAAAGACCATTGCCTTTGGAGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E463657" ref_strand="+" ref_description="SGN-E463657 [cPRO-15-I8]">
      <seq>gaaatttcggttggtttgagaaggagcaaaaacagtcctcttttcttatctccattgtttttaactacttctagggttttaatcttctccggtggccgccatggaagaagttcggtctaccacagcttgggtcgctactcactcctctcatgttaccgttgatttcacaggcattgagaaggtcgctgaaaatatgaagaactcactaccaaaagtggagtgggattttgaagggattcactattttgataatggtccacttactgttcagtatttgctggtgttggatacattgaatttctgtttctggccagacgaggagatgagttatgatcatctggcatctggattaaaggttactcttgaaagtgacaaatctgcatttgatgctgatcgtctacagaaatatagtggtcctcaattaaggaaaatgttgaactggtcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="2888" stop="5513"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3188" g_stop="3357" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3358" i_stop="3505" i_length="148">
            <donor d_prob="0.768" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3506" g_stop="3649" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="314" r_length="144" r_score="0.938"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3650" i_stop="3999" i_length="350">
            <donor d_prob="0.319" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4000" g_stop="4098" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="413" r_length="99" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4099" i_stop="5179" i_length="1081">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5180" g_stop="5213" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="447" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E463657" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E463657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3188" e_stop="3357"/>
          <exon e_start="3506" e_stop="3649"/>
          <exon e_start="4000" e_stop="4098"/>
          <exon e_start="5180" e_stop="5213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTTCGGTTGGTTTGAGAAGGCGCAAAAACAGTCCTCTATTCTTATGTCCCTTGTTTTTAACTACTACTAGGGTTTTAATCTTCTCCGGTGGCCGCCATGGAAGAAGTTCGGTCTACCACAGCTTGGGTCGCTACTCACTCCTCTCATGTCACCGTTGATTTCACAGGTCCCTCAGCATTCTCTCCGTGTTTCCCATTACGTTAATCCAATGCACTTCCGTTACTAATTTTCTTTTAATCTCAAATTATTTAGAGTCTGTTATTTGGCTTGTATTTGATAGTATAAGATTACATTTTGGTATGTGTTATATGCAGGCATTGAGAAGGTTGCTGAAAATATGAAGAACTCATTAACAAAAGTGGAGTGGGATTTTGAAGGGATTCACTATTTTGATAACGGGCCACTCACCGTTCAGTATTTGTTGGTCTTGGATACATTGAATTTCTGTTTCTGGCCAGGTACCTTAATAAGTTTATCGTTAAGGAAGCAGTAAACAGCCTTGTAAATTATTCAGATGCTAAACTTGTGAAATTGCTTTAATATTATTTGTCTTTAAGCTATATTTCTTATAAATGAATGACATAAGTGCTGGGAAACTTCAGTGTTGTACTTGGTCAAAATGTCAGAAGTATCTTCTAACTTTTTATCCTTGAACTCGCACATTTATGTTGATCAAGAAAATTTGTAATACAGAACCGTATTCATGATGCTTGTTAGGGCTTATTTAAAGGTTCTTATAGCAGTTTTTATTTCAGTTGTTTGAAAATATGCTCTGGTGTATTGACCTTTAACTTGCATCTAATTGCAGATGAGGAGATGAGTTATGATCATCTGGCATCCGGATTAAAGGTTACTCTTGAAAGTGACAAATCTGCATTTGATGCTGATCGTCTACAGAAATATACTGGTAAGCAGGTTTCTTTGAGACTCTGCCTTTTGGATTTTTTTTTTACTTTGCCTACTCCACCCATTGCGTGAGGAAAGCCTTCTAGTAGTGGCATGAGACTGTTGGCATCCAGTGATGCACTCGGGGGCTATGTGATGTTCACTGAACAGTCTCTCAATTCGTATATAAAAGTGGTCCCTTAAGAATGCGAATGATGTCCACTTTTTCTTTTGAATACCCATCTTATAATTTAATCCCTTTCAATCCAACTAACTACAATCTATGGGAATGCCTTTGTGATCATTAACTTTAAGGTCCTCATTTAACTATTACAAGTGAGGTAATCCAAGATCCAAAACTTGTTATCATTTTTTAGCCTTTAGTTAAAATTTTCTATTGTTGTTGAAGTAGCTCATTATTCGACAAAAAATATTGTGATAAATCCTAGTTTAGAATCTCTGGCATGACACTCACTCTCTTAAATCTTTAGAATTTAACTCCTATTGCAATTTATTCCACGTCTCAAGGTTAAGTCAGGAGATTGAAAAGAATTAAAATTTGATGCAGCAATAGAGACACATAAGATTAATAAAGTATAAAAGGGATCATAACTGATGTAGCAATAAAGACTCGTGAGATTAATAAACTATTAGGGCCAGAACAGAATAATTTTTTTTATGACAAGGGAAACCTGCAGCTGCTACTCTTCGGGTGCACACAAAATAAAACCCCTACTCATGTGCAATAGCTCGCAAACCACACAGGAGAGTAATCCGCATTAGAAAAGCCTGATGCGATAAGCTCGATGGGAAACCCCTTGCTTTTGCTGGCAAGGGGTTTCGAACTTGAGACCTCCAACATGGAAGTCCCAAGCCCAAACCACATGGCCACGGGCCATCCCAAAGGGTAGCTAGAGGAGAACATTACCTTGAAAGCATCTTCGTTGGTTATGTTTGTGTTCAGCAAGTCTTTATGTTAAGCAACTCACGGGTTCAATTTATATAGTTTGACAAATGTCTTGAATGTTTTGAGTTCTGAAATCTTATAACCTTTCCCTTTGTACTTGTTTGAAGATAATCTCATTGCAAACACCATTTTTTAGGTCCTCAATTAAGGAAAATGTTGAACTGGTCAAG</genome_strand>
        <mrna_strand>GAAATTTCGGTTGGTTTGAGAAGGAGCAAAAACAGTCCTCTTTTCTTATCTCCATTGTTTTTAACTACTTCTAGGGTTTTAATCTTCTCCGGTGGCCGCCATGGAAGAAGTTCGGTCTACCACAGCTTGGGTCGCTACTCACTCCTCTCATGTTACCGTTGATTTCACAG....................................................................................................................................................GCATTGAGAAGGTCGCTGAAAATATGAAGAACTCACTACCAAAAGTGGAGTGGGATTTTGAAGGGATTCACTATTTTGATAATGGTCCACTTACTGTTCAGTATTTGCTGGTGTTGGATACATTGAATTTCTGTTTCTGGCCAG..............................................................................................................................................................................................................................................................................................................................................................ACGAGGAGATGAGTTATGATCATCTGGCATCTGGATTAAAGGTTACTCTTGAAAGTGACAAATCTGCATTTGATGCTGATCGTCTACAGAAATATAGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTCAATTAAGGAAAATGTTGAACTGGTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E448409" ref_strand="+" ref_description="SGN-E448409 [cSTS-2-J24]">
      <seq>ggttggtttgagaaggagcaaaaacagtcctcttttcttatctccattgtttttaactacttctagggttttaatcttctccggtggccgccatggaagaagttcggtctaccacagcttgggtcgctactcactcctctcatgttaccgatgatttcacaggcattgacaaggtcgctgaaaatatgaagaactcactaccaaaagtggagtgggattttgaagggattcactattttgataatggtccacttactgttcagtatttgctggtgttggatacattgaatttctgtttctggccacacgaggagatgagttatgatcatctggcatctggattaaaggttactcttgaaagtgacaaatctgcatttgatgctgatcgtctacagaaatatagtggtcctcaattaaggaaaatgttgaactggtcaagaccattgcctttggaggatgaaccggtgcgcttattgcatgatgttcagcttgagcttgagaggagctttgatggaaatgcatctaaacttgtggagtcctgcgacaactctgctgcaaaacttgtagctcttatgacacgccact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="2896" stop="5848"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3196" g_stop="3357" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3358" i_stop="3505" i_length="148">
            <donor d_prob="0.768" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3506" g_stop="3649" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="306" r_length="144" r_score="0.924"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3650" i_stop="3999" i_length="350">
            <donor d_prob="0.319" d_score="0.92"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4000" g_stop="4098" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="405" r_length="99" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4099" i_stop="5179" i_length="1081">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5180" g_stop="5256" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="482" r_length="77" r_score="0.961"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5257" i_stop="5445" i_length="189">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.979" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5446" g_stop="5548" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="585" r_length="103" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E448409" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E448409" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3196" e_stop="3357"/>
          <exon e_start="3506" e_stop="3649"/>
          <exon e_start="4000" e_stop="4098"/>
          <exon e_start="5180" e_stop="5256"/>
          <exon e_start="5446" e_stop="5548"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGGTTTGAGAAGGCGCAAAAACAGTCCTCTATTCTTATGTCCCTTGTTTTTAACTACTACTAGGGTTTTAATCTTCTCCGGTGGCCGCCATGGAAGAAGTTCGGTCTACCACAGCTTGGGTCGCTACTCACTCCTCTCATGTCACCGTTGATTTCACAGGTCCCTCAGCATTCTCTCCGTGTTTCCCATTACGTTAATCCAATGCACTTCCGTTACTAATTTTCTTTTAATCTCAAATTATTTAGAGTCTGTTATTTGGCTTGTATTTGATAGTATAAGATTACATTTTGGTATGTGTTATATGCAGGCATTGAGAAGGTTGCTGAAAATATGAAGAACTCATTAACAAAAGTGGAGTGGGATTTTGAAGGGATTCACTATTTTGATAACGGGCCACTCACCGTTCAGTATTTGTTGGTCTTGGATACATTGAATTTCTGTTTCTGGCCAGGTACCTTAATAAGTTTATCGTTAAGGAAGCAGTAAACAGCCTTGTAAATTATTCAGATGCTAAACTTGTGAAATTGCTTTAATATTATTTGTCTTTAAGCTATATTTCTTATAAATGAATGACATAAGTGCTGGGAAACTTCAGTGTTGTACTTGGTCAAAATGTCAGAAGTATCTTCTAACTTTTTATCCTTGAACTCGCACATTTATGTTGATCAAGAAAATTTGTAATACAGAACCGTATTCATGATGCTTGTTAGGGCTTATTTAAAGGTTCTTATAGCAGTTTTTATTTCAGTTGTTTGAAAATATGCTCTGGTGTATTGACCTTTAACTTGCATCTAATTGCAGATGAGGAGATGAGTTATGATCATCTGGCATCCGGATTAAAGGTTACTCTTGAAAGTGACAAATCTGCATTTGATGCTGATCGTCTACAGAAATATACTGGTAAGCAGGTTTCTTTGAGACTCTGCCTTTTGGATTTTTTTTTTACTTTGCCTACTCCACCCATTGCGTGAGGAAAGCCTTCTAGTAGTGGCATGAGACTGTTGGCATCCAGTGATGCACTCGGGGGCTATGTGATGTTCACTGAACAGTCTCTCAATTCGTATATAAAAGTGGTCCCTTAAGAATGCGAATGATGTCCACTTTTTCTTTTGAATACCCATCTTATAATTTAATCCCTTTCAATCCAACTAACTACAATCTATGGGAATGCCTTTGTGATCATTAACTTTAAGGTCCTCATTTAACTATTACAAGTGAGGTAATCCAAGATCCAAAACTTGTTATCATTTTTTAGCCTTTAGTTAAAATTTTCTATTGTTGTTGAAGTAGCTCATTATTCGACAAAAAATATTGTGATAAATCCTAGTTTAGAATCTCTGGCATGACACTCACTCTCTTAAATCTTTAGAATTTAACTCCTATTGCAATTTATTCCACGTCTCAAGGTTAAGTCAGGAGATTGAAAAGAATTAAAATTTGATGCAGCAATAGAGACACATAAGATTAATAAAGTATAAAAGGGATCATAACTGATGTAGCAATAAAGACTCGTGAGATTAATAAACTATTAGGGCCAGAACAGAATAATTTTTTTTATGACAAGGGAAACCTGCAGCTGCTACTCTTCGGGTGCACACAAAATAAAACCCCTACTCATGTGCAATAGCTCGCAAACCACACAGGAGAGTAATCCGCATTAGAAAAGCCTGATGCGATAAGCTCGATGGGAAACCCCTTGCTTTTGCTGGCAAGGGGTTTCGAACTTGAGACCTCCAACATGGAAGTCCCAAGCCCAAACCACATGGCCACGGGCCATCCCAAAGGGTAGCTAGAGGAGAACATTACCTTGAAAGCATCTTCGTTGGTTATGTTTGTGTTCAGCAAGTCTTTATGTTAAGCAACTCACGGGTTCAATTTATATAGTTTGACAAATGTCTTGAATGTTTTGAGTTCTGAAATCTTATAACCTTTCCCTTTGTACTTGTTTGAAGATAATCTCATTGCAAACACCATTTTTTAGGTCCTCAATTAAGGAAAATGTTGAACTGGTCAAGACCATTGCCTTTGGAGGATGAACGAGTGCGCTTATTGCATGAGGTACACTTCTTAATTCTTGATTTGGTGTTCTATGCACTCTTTTAATGCTTCGGCAGGTGATAATTATTTTTTTTTTGCATTATGTGCATTCTCTTAATGTTCAGAAGTCGTAATTTGCTGTGACTTATAATAATGTGTGATCTCTTAAGCTTGTTAGTGAGCTAATAGCTCTGTGGAATAATGGTTAAGGTTGGGCTTGAGCTTGAGAGGAGCTTTGAGGGAAAGGCATCTAAACTTGTGGAGTCCTGCGACAACTCTGCTGCAAAGCTTGTAGCTCTTATGACACGCCACT</genome_strand>
        <mrna_strand>GGTTGGTTTGAGAAGGAGCAAAAACAGTCCTCTTTTCTTATCTCCATTGTTTTTAACTACTTCTAGGGTTTTAATCTTCTCCGGTGGCCGCCATGGAAGAAGTTCGGTCTACCACAGCTTGGGTCGCTACTCACTCCTCTCATGTTACCGATGATTTCACAG....................................................................................................................................................GCATTGACAAGGTCGCTGAAAATATGAAGAACTCACTACCAAAAGTGGAGTGGGATTTTGAAGGGATTCACTATTTTGATAATGGTCCACTTACTGTTCAGTATTTGCTGGTGTTGGATACATTGAATTTCTGTTTCTGGCCAC..............................................................................................................................................................................................................................................................................................................................................................ACGAGGAGATGAGTTATGATCATCTGGCATCTGGATTAAAGGTTACTCTTGAAAGTGACAAATCTGCATTTGATGCTGATCGTCTACAGAAATATAGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTCAATTAAGGAAAATGTTGAACTGGTCAAGACCATTGCCTTTGGAGGATGAACCGGTGCGCTTATTGCATGAT.............................................................................................................................................................................................GTTCAGCTTGAGCTTGAGAGGAGCTTTGATGGAAATGCATCTAAACTTGTGGAGTCCTGCGACAACTCTGCTGCAAAACTTGTAGCTCTTATGACACGCCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E476917" ref_strand="+" ref_description="SGN-E476917 [cSTB-46-F1]">
      <seq>caaaaacagtcctcttttgttatctccattgtttttaactacttctagggttttaatcttctccggtggccgccatggaagaagttcggtctaccacagcttgggtcgctactcactcctctcatgttaccgttgatttcacaggcattgagaaggtcgctgaaaatatgaagaactcactaccaaaagtggagtgggattttgaagggattcactattttgataatggtccacttactgttcagtatttgctggtgttggatacattgaatttctgtttctggccagacgaggagatgagttatgatcatctggcatctggattaaaggttactcttgaaagtgacaaatctgcatttgatgctgatcgtcttcagaaatatactggtcctcaattaaggaaaatgttgaactggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="2914" stop="5509"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3214" g_stop="3357" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3358" i_stop="3505" i_length="148">
            <donor d_prob="0.768" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3506" g_stop="3649" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="288" r_length="144" r_score="0.938"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3650" i_stop="3999" i_length="350">
            <donor d_prob="0.319" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4000" g_stop="4098" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="387" r_length="99" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4099" i_stop="5179" i_length="1081">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5180" g_stop="5209" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="417" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E476917" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E476917" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3214" e_stop="3357"/>
          <exon e_start="3506" e_stop="3649"/>
          <exon e_start="4000" e_stop="4098"/>
          <exon e_start="5180" e_stop="5209"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAACAGTCCTCTATTCTTATGTCCCTTGTTTTTAACTACTACTAGGGTTTTAATCTTCTCCGGTGGCCGCCATGGAAGAAGTTCGGTCTACCACAGCTTGGGTCGCTACTCACTCCTCTCATGTCACCGTTGATTTCACAGGTCCCTCAGCATTCTCTCCGTGTTTCCCATTACGTTAATCCAATGCACTTCCGTTACTAATTTTCTTTTAATCTCAAATTATTTAGAGTCTGTTATTTGGCTTGTATTTGATAGTATAAGATTACATTTTGGTATGTGTTATATGCAGGCATTGAGAAGGTTGCTGAAAATATGAAGAACTCATTAACAAAAGTGGAGTGGGATTTTGAAGGGATTCACTATTTTGATAACGGGCCACTCACCGTTCAGTATTTGTTGGTCTTGGATACATTGAATTTCTGTTTCTGGCCAGGTACCTTAATAAGTTTATCGTTAAGGAAGCAGTAAACAGCCTTGTAAATTATTCAGATGCTAAACTTGTGAAATTGCTTTAATATTATTTGTCTTTAAGCTATATTTCTTATAAATGAATGACATAAGTGCTGGGAAACTTCAGTGTTGTACTTGGTCAAAATGTCAGAAGTATCTTCTAACTTTTTATCCTTGAACTCGCACATTTATGTTGATCAAGAAAATTTGTAATACAGAACCGTATTCATGATGCTTGTTAGGGCTTATTTAAAGGTTCTTATAGCAGTTTTTATTTCAGTTGTTTGAAAATATGCTCTGGTGTATTGACCTTTAACTTGCATCTAATTGCAGATGAGGAGATGAGTTATGATCATCTGGCATCCGGATTAAAGGTTACTCTTGAAAGTGACAAATCTGCATTTGATGCTGATCGTCTACAGAAATATACTGGTAAGCAGGTTTCTTTGAGACTCTGCCTTTTGGATTTTTTTTTTACTTTGCCTACTCCACCCATTGCGTGAGGAAAGCCTTCTAGTAGTGGCATGAGACTGTTGGCATCCAGTGATGCACTCGGGGGCTATGTGATGTTCACTGAACAGTCTCTCAATTCGTATATAAAAGTGGTCCCTTAAGAATGCGAATGATGTCCACTTTTTCTTTTGAATACCCATCTTATAATTTAATCCCTTTCAATCCAACTAACTACAATCTATGGGAATGCCTTTGTGATCATTAACTTTAAGGTCCTCATTTAACTATTACAAGTGAGGTAATCCAAGATCCAAAACTTGTTATCATTTTTTAGCCTTTAGTTAAAATTTTCTATTGTTGTTGAAGTAGCTCATTATTCGACAAAAAATATTGTGATAAATCCTAGTTTAGAATCTCTGGCATGACACTCACTCTCTTAAATCTTTAGAATTTAACTCCTATTGCAATTTATTCCACGTCTCAAGGTTAAGTCAGGAGATTGAAAAGAATTAAAATTTGATGCAGCAATAGAGACACATAAGATTAATAAAGTATAAAAGGGATCATAACTGATGTAGCAATAAAGACTCGTGAGATTAATAAACTATTAGGGCCAGAACAGAATAATTTTTTTTATGACAAGGGAAACCTGCAGCTGCTACTCTTCGGGTGCACACAAAATAAAACCCCTACTCATGTGCAATAGCTCGCAAACCACACAGGAGAGTAATCCGCATTAGAAAAGCCTGATGCGATAAGCTCGATGGGAAACCCCTTGCTTTTGCTGGCAAGGGGTTTCGAACTTGAGACCTCCAACATGGAAGTCCCAAGCCCAAACCACATGGCCACGGGCCATCCCAAAGGGTAGCTAGAGGAGAACATTACCTTGAAAGCATCTTCGTTGGTTATGTTTGTGTTCAGCAAGTCTTTATGTTAAGCAACTCACGGGTTCAATTTATATAGTTTGACAAATGTCTTGAATGTTTTGAGTTCTGAAATCTTATAACCTTTCCCTTTGTACTTGTTTGAAGATAATCTCATTGCAAACACCATTTTTTAGGTCCTCAATTAAGGAAAATGTTGAACTGGT</genome_strand>
        <mrna_strand>CAAAAACAGTCCTCTTTTGTTATCTCCATTGTTTTTAACTACTTCTAGGGTTTTAATCTTCTCCGGTGGCCGCCATGGAAGAAGTTCGGTCTACCACAGCTTGGGTCGCTACTCACTCCTCTCATGTTACCGTTGATTTCACAG....................................................................................................................................................GCATTGAGAAGGTCGCTGAAAATATGAAGAACTCACTACCAAAAGTGGAGTGGGATTTTGAAGGGATTCACTATTTTGATAATGGTCCACTTACTGTTCAGTATTTGCTGGTGTTGGATACATTGAATTTCTGTTTCTGGCCAG..............................................................................................................................................................................................................................................................................................................................................................ACGAGGAGATGAGTTATGATCATCTGGCATCTGGATTAAAGGTTACTCTTGAAAGTGACAAATCTGCATTTGATGCTGATCGTCTTCAGAAATATACTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTCAATTAAGGAAAATGTTGAACTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E421056" ref_strand="-" ref_description="SGN-E421056 [STM-32-O9]">
      <seq>aaagagctcaattttttgctgctgatttgtggggtgcatttaagggtgaaggatacggtgattttgaagacataagctcaataaccatatttgctgatatattgtttccagctgtccttcagcaacttggagtgctgagatatcgttcttccctggataatactatcaagaaaaatactgaaattgtctcaggcagtgaggaggaagtagaactccgagcctgctctgtttatgctgtggagaaaatgaaggagttgatcagtaaaaagactgggaagcaggtgttgagtgtggaactggatctctggttatgggcttttggcatacaatgcccatctcttcaacaccatcggacactctctgtctattattgactatagaattaagctccatttccattgcagtcttgcatacaaatgatggttttggttttgggattttgacatttacatgtctagatgtaatagtacagaaattatacaggattattttctcatcctagtggtgaatttacttttttcaaggagtactgaggttgaatatcagttatttaacctctttcaatctcgttagatttctgtaaattgacctacatacatattttattttatggtaaatgttggctggagaaatgcctcactttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="5389" stop="20237"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5689" g_stop="5969" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5970" i_stop="7101" i_length="1132">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7102" g_stop="7199" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="379" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7200" i_stop="19659" i_length="12460">
            <donor d_prob="0.852" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19660" g_stop="19889" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="609" r_length="230" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E421056" ref_strand="-">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E421056" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="5689" e_stop="5969"/>
          <exon e_start="7102" e_stop="7199"/>
          <exon e_start="19660" e_stop="19889"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGCTCAAATTTTTGCTGCTGATTTGTGGGGTGCATTTAAGGGTCAAGGATACGGTGATTTTGAAGACATAAGCTCAATAACCATATTTGCTGATTATATTG-TTCCAGCTGTCCTTCAGCAACTTGGAGTGCTGAGATATCGTTCTTCCCTGGATAATATTATCAAGAAAAATACTGAAATTGTCTCAGGCAGTGAGGAGGAAGTAGAACTCCGAGCCTGCTCTGTTTATGCTGTGGAGAAAATAAAGGAGTTGATCAGTAAAAAGACTGGGAAGCAGGTTGGTCTTGCTCATTTCCATTGTTTTGATGTTCTTTAGTGGTTAGATTTGGTGATTGCTAACTTATACTCAGCCAATTTTGTTGAATGAATATGCATTTTTTTGCATGTGTAAAGCTTGACGTCTCTTATTGACAGGGCTATGAGGAAACGTGCAATATTTCATATACTTCACCCTAGAACAGTTATATCCCGAAGTTTGCAGATAAATGACTTCATGAAATAGAATAATCTACAATATAGAAAATCATTCTTTTAGCTTTAACAGTTGATCGGCTGGTATTAATTGAAATTCTGGCCATCTAGAGTGTTGGTTTTAGATATTTGATGCCTACTCTTCGATTTTAAAACATACAAGTCAACTTGTATGCTTTTTTTTTTTTACTTTCTAATATATAGTTATACCTATTGGAACAAGAAATCATCAAATGGAAATGTTAGAAACACATTCGTAAAAGTGAGCCTTCAAAAGGCAACAGGCAATCAAATTGCAGCTAACATGCCTACTCTAGCTAAGGTTAGAAATATATAGTTATTGCGCCAGCTAAGTTTTTTCTTACATCATGTTGATGTCTTGAGGTTAAATACAAGACTATAAAAAGGTGAGTTACATGTCCAATGGTTAAGGTAAGTTATATCTGAGCTGAGATCTATATACCTGATTTCATTGCTGGCAATAAATAAATAAAGGCTGCACTTGTCGGGGTGGCCCAATGGTTTGAGCTTGGGACTTCCATGTTGGAGGTCTCAAGTTCAAAACCCCTTGCCAGCGAAAGCAAATGGTTTGTTTTCTGGGTCAAGCTCGTCACACTAGGCTTGTCTAGTGCGGGTTACCTCTTCTATGTGATTTGCAAGCTATTGCACAAGAGTAGAGGTTTTACCCTGTGCACACTTAAAGGGTACTGGCTGTAGGTTTCCCTTGTCATCAAAAATAAAAATAAAGGCTGCTACTGTGGTTACTGTTAGTCTGACATGTAAGCTATGTTCCTTGCAAGATATTTGGTAGAATTTTTTCCTTTCTAATATTTATCAACTTGTTATTCCTGTGCTATGTGTATTCTAAAGTGAGTTCCCAATTTACTTTGTTTGAATGCCACTTTTACAAAAATGTGACATCTCATTTTGCTATACAGGTGTTGAGTGTTGAACTGGATCTCTGGTTATGGGCTTTTGGCATACAATGCCCATCTCTTCAACACCATCGGACACTCTCTATCTATTATTGACTATAGTAATTAAGCTCCATTTTCATTGCAGTCTTGCATACAATTATGGTCTTGATTTTGGGATTTTGACATTTCCACGTCTAGATGTAACAGTACAGAAATTATACAGGATTATTTTCTCCTCTTGGTGGTGAATTTACTTTTTTCAAGGAGTGCAGAGGAGAGGTTGATTATCCGTTTATGCAGTACCTTGTATAATGTTGATGGGCTCAACACTCGGGCTGTTTGGTTAGAGTTATGGATGTATTCGTTTAGATAGAATTTAGTGTAGGATGAGTTATTAGTTATTCAAATATTAGTTATATAAGATTTAATTATGCACATATATTAGTCATGAAAGATTTAGTTAGATAGGTATTAGTATGTAGATCTTTTTAAAAAAATGGTAAGCTTATTCTTATTTCTTAATTTCAAAATGTTTAATAAGCTAATATGTATTATACTCGTCAAATTAAATCAAAATAAAAATAAACACAAATAATTCCAGCACCGTTACAGAAGCATGTTAAATAACTAAAACCAAAAGTCATTTGCAATAAATATTATTTAATTTCTCAAATATTTATAGCGGCTATCTCAAATAATTCCAGCAAAAGTCATTTGCAATAAATATAATTTAATTTCTCAAATATTTATAGCGGCTATCTCAAATAATTCCAGCACCATTAGAGAAGCATATTTTAAATATAACTAATAAGTATAACATTAGCAAATAAATATCACATTTTTTGTCGTAATTCGTTTTTATTACTTTAAAAAAAGTAGGAAGTGAAATAAAACAAGAAACGGTAAAAGTTCAGTTTTTCTTAAATATTATATTTGGCCATGGAAAAGGGTAAATGCCTAATTTATTATTTAATATATGTATAAATAATATACACCTAATTTATTTCACTTTCTTTTATACATAACTTATATATATATTTTTTTCATAAGTTATATCAGTATTAATTGTGTAGACTACAAAAAAATGCAACAAAACACAGAATATAAATTAATAAATGAATAACATTTATATAATATTTGAAAACGTATCAACCAAACATTATATAAAAAGTAATATATGAAACCAAACAAGATATAAAATTAACACATGAATAACCAAAGTTATTCATGTATTAACTTCATGTTTATTCCATAAACAAATGGCCCCTTAATTACTAACAAGGGTTGTGGTGGAATGATAAATACTCTTTTATACTTGAGTCTCGGTTTGAGTCCCCTTGGATATAAAATCACCTTTGTTAGGGAGCGATTTACCCCTCAATGTAGGACTTCCTCGATGCAAATCCGATTTTAGTTGAATTCAATGTGAATATCGGACATCGGGTGAGTAACTATTAGATACCGAACACTAAATGAGAAATAAAAAAAAAGTCCCTCAATCCTATATATATATAGTATATGCTAATTATTCAATTTCGATCAAATCAAAATTATAAAGAAAAAGATGTTAATGAAATAGAACGAAGAATTATGAGTGGGTGTATTGAGTAATTTTCCTTTAAATTATTTAAGTCATAAATATAATTTACACTTAATTATAAATATAATAATAACGACGGATCAATAAAAACAACATAATAATAAGAGAAGTCATTAATTATGCTACAATTTTCTCCTTTAAAAGACTCTAATTTGATTTAGTTTATCATTTTTTATTTTTTAAAAATTTAAGCTAAATAAGATAAAAAGATTATTTTTTTTAAGAATAAACAATTAAAGCCAAAAAAAATATAAAAAATGAAATAAGTGAAGGGGTAAGCAAATAACCTGTTCTTATTTTAATTAGGAAACTTTTTTTAGCGTGTTTTATTTTTTTAAATTTTACGCGTGTTAAATTTTTTGTTCTATAAAAGAGATCCCACCTGCCAATTTAGAACCCACCACCCACCGTCATTTACACTCTCTCGCTGATGATTCATCCGACTTCCAAGTAAAATTCTTCTATCCAAGAAAATTATGTTCAAGAAGATGGATGCATAGTATTAAGCAATGCCTGGGTAAAACCCTAAATCAATTTTGATACTCTTTTATCCATTGAAAATTCTTGTACGCCTTTCTTACAACTTGTTGGTTTCTTGGAGTTTTACGTTGGTATTATTTGATGCATATTTTACGGAAAATCAAGAAATCTTGCATTCATGCTTGACAAAAATTCAAGAACTTGTTGGCATATTTTAAAGAAATCAAATAAATTGTAGTTTTCAAGTATATATAGACATTGCAAAATTCAAGAAATCCTTTTTTTTTTTTTAAAAAAAAAAGGAATTGTGTTGTCATTCTCGGAATCAAGAATTTGTTTCAAGCCTTTTTTTAGGGAGATGGGTTCGCATTAACCTGTTTGCACTAGGTATATGTTTCTATGTTAAGGTGGATGACAATGGTTAGTTTTAGTTTCTTTGACATTGCTACAATGAACTTCGATGTGTAGAAAGTTCTTCTAAATTTATTATATTACGTCATCATCTGAACGTTCTGGTGTTTCATGAGATGGAATGATGCTGATGAAAAAAGATATGGTGGTCTTTTGCAATATGTTGAGCTATCATCTTTTCTGTAGTTGGATGATGTCATAATTTCTTTTTTCCTGACAATTATGTTGTTCGTAACTTATAATTATTGTTGTAGTCTATAGGATTGCATGCATTACTCAATTGTAGGGCTGTTTGACGGTTTGTGTTATTAGTATCATTTTACATATGTTCTTTTATTTATTGTTTTGTGGATTTACTTGTAATAGGACAAACCTGTATGGCTGTACAAACATACAGATTGGTGCATATGTACTTCTAGCCAAGCTTATGGAGATAGTATATGTGCCCGATTATTTCATCTTCTATTATGCTTCCTTTTTGTCTGTCCATTTTAATTATTGTTTAGTATGCTTCATTTACACTAGCAATATCAAAATACAGCCATGAGATGATATGCACAATTTCCCTGAAAATTTGGCTTTAAAGGGAGAGGCTCTTAGCTGTATTTCTGACATTTCTTTGTTGGAAATTGTTACTAAAACTCATGGGATGCCAAATGGATACTGAAAGGTTTTGAAGATAAAGTTCTTTTGAGATTTAGTTGGTAGTATCCATTAATAGGTATGAAACTACTAACTTGATCTTTGTTTTTCCCATTTTTTTTCAGGATGACAAGTGTTTGTACCTTGGAATTGATGATTATAGTCATGAAAATCTTAAGAATTATTTGATAACACAAGCTATGCTCTCCTCTAGGGTGGATGGGGACTCGCATAAATGGATTGATGCTAAAAATCAAGGTAAAACAGATGAACTTATAAGGAAGAAGAAGAGTAGAAGAAGTCATTCAGCTCCTCCATTTACCAAGGCAAGAAGAAAGTCTTTGTCATGAGAGTCTTCAAGAAAGGCGGCAGGAAATAATAATATTAAGACTGTTCATGATGTGCCACTCATGCCACGCAATTTGTCCTTTAGTGCTTCTTTGTATCAATAATCAATGATGACAAGAAATGTGTACAACTAATTAGTGTTCGTTTCCATCGTGCAGAAACTAGAGCTGTAAGGAGACGGGATCATTCTGCATAAGCTATCTGCTGGGAGCTTCCACGGCAGTCATCTCATAATGTAATTAAGCTTCCACCCCAAGTTGTGGTGAGAGGGAATTCTCTGATGAAAGGTAATGTCATCAAATTTCTTGGGAAGGTTAATTCTGTTTCTGATCTTATCTCTGTCAAATATGTTAGTAAGTCACATGACATGATGTTTCAAATCTGGAATAGCAAAGTACAAGCTCAAGGGGAGGGCACAAGTAAACGCACCGGGGAGTCAAAAGAAGGTAAACTATTCCTGCCATTTGTTCCTGACCTGAATACGATTTAAGAGCTGAACTTTTCTAGTGTATGTTTCAGTTAATTGGCTTCATTTCTTTAACCCACTTCTCAAGCTTATCTTAGACTGCATTCTTCTTAATGTCTCTTTCTAAGTCTCCTAGGCTACATAGTCTTTTTCAAATTCCATCTTGCATATGTTCTGATTTTGTAATAGAATTATCAGGCCTGAAATTTTTATTCAAATAGTCAGAATTTGCACTAACAAAAACTAAAGTTTCTTAAATTCTGGGACAGAATGGAGGGACTTCCCTCCAGAAATTACAGTTGAGTACCTTAGCTATATCTCGGATGTTTTTGTGACTTCTTCTCTATTTTGTTAAGATGACGAACTTTTTCCTTTTCCAATATGAGATGTAGAGTCGTACTGGAACAGAGAATCTTAAGAATCAGGATACTATACTCGACATCACTTCTGGCGTATTGCATTTTGTTGGTGATTCATTTTTTTAATCTTTTTTTCAAGCCCAAAAGTTGCCAGCTCAAGTAAGTTAAAATAATAATAATTATTAAAAAAAAAGACAACAACAAAAATCTCCTATTCAGATGGATCTAGAAAAGGAAAGTATTTATTGTCTACAAATGCAGTATGTGCTTACACAAAAGGGTTCCCCTGTTCTCCTCCCTCAAAGATGCCTACTCCCATGGTTGATCAAACCTGTGGCACCGTCATTTTCTTGTTTTTGGAGCTTAATCGGTTCGGGTAAGTGTCTTAGTGTCTTCTTCTTTGATTTTTGGACATTTTGACTTCTTTTTTTATGATTACGGTCCATCCTTTACATTGTACCTAAGTACAAGATATGAAAATGAGTTGAAATCAAGGTCCTCTGGTCTCTCATTCAGAAGTGTACCCCGTGTGTGAATTGAAATTTCCAGTGGCTTCAAAAATGTGTTACCAGATGTATAACTTATTTTGCCTCCTTCCAACTGAGCATTTTCGATTTGAAAAACTTGGTTCCACCCTTGTGTATTAACATGTTTCTGGTTTGTATAAAAATTGTCTCTCCAGTATGCTATTTGTCTTCATATACAAGTTTTCAAGTAATGATTTCATATTACCACAATTTTTCTGCTTTTGCTTGTTGTAAATTGGACCGTAGTGAACTCGTGGATCCTGCTGATATTCCTCCTGTGAAACTTGTGTGAATTCTCTGCTATGTTAGTAATCTGAAATTTTGAATTCCTTCATTGAGTATTCACTTATCATGATGTTGGCTAATGGCTAAAAAAGGTCTTTATCAAATGATAAAAGAAAATTCCCCTTACCTAATGTTGTGTTGCTGTGAAGTCCTTTTAGTTTTTATCCTTAAGTTTGGCACTAGTTTTTTTTCTAGGTTTAGAATTTTCCTGGCTGGGGGGTGGGGGGTAGTTTGGTGAAAGTGGAAGAATTCAATCTCCCTTCCTTATCCAAAGCTAGATAAGCCATGTAATCCGCCAGTGTATTCCTTTACCTATAAACATGCTGGATCGTAACTTGACATTGAAGTGCTAGAGCCTTGATATCACTTACCAGAATAGCAATCTGCCAAGGCACTTCCTGATAACATTGATAAAAACTGCCTGGAGGGTGCCAAAGTTCTCCAACAGGTCGATAAGAAGTTTCTTTACGATTTTGGCAAACAAATCACATGCTATAATTGATCAGGTCTATTCTGTCCTCTGCATAGTCCATTATGACAATTCTTTGTATCTCATGAATTTCTTATAACACATTTACTTTAAACGCTTATTTCTCTTAGGGATTGTTTGTTGGACTCAATAGCAAATATAAATTTTAGCGTGAACTTCTGCATAAATAGTACAACATTTGTTGGCTGCATAAGAAAAAGTAATATTCGCATAACTATGCAGCAGTTAGTTAGACGCATATGAATTTTTTTTTTTTGACATAACTATTGCAACATTCGGACGGGGGTATTTAACTGTCATTATTAATATCCTCATGATTTATGCAAGAATCTACGCCAGTATAGGAGGACTTGATTCATGTGATGTCTATAGTTCAGATCCTTCTAAATTCTATTATGATGGTGATGATTTGACACATAAGCATTCTCATGGTGAAGAGAATCCTTAGAATTTTTTGATACCACGAGCTATGCTCTCCTCTCGGGCGGATGGGTACTCGCATAAATTGATTGATGCTGAAATTCGAGGGTAAATAGATGTGCTTATAAGGAAGAAGAAGAAGAGTAGAAGAAGTCATTCAGCTCCTACCTTTTACCAAGGCAGAGGAATGCAGATCAATCTAGCAGGCCACCTAATTTTTGGATGAAGCATAATTCATGGGATTGATTCCTGATGTTGCCATTCTTTTTGTTTATTTATTTATTTTCATAGGTGCAATTATGTTTGGAGCTGCATTATTACTTTCATAATGTTCTCTCATGTTGAGGAGTTGAAGGAAACTTCATTGTGTTCTCAGAATTGCATTTCGGGAAATATCTGTGTTGGAACTGTATTTGATGGTATGTTTAAGAGAGAAATTCCATATTATTAATGACTGCAATATATTTTCATTTGTTAGTGTGCAATTGCACTCAACATTATTGTGCAACATCACTTGATGGCTGTCTTGCTAATTGCATAGTCGATGTGAACTGGAAATCCAAAAATTCTGCACATCTAGTTTACCTACAGAAGATGATTTCCTGGACAACAAATTCAGGGCTTCAGCTGGATCCAGTTATAAATCAGACTGCCTGTCAGGTTCAGGTGGGATGATGAGTCATTTAGGGCAAAATAAATTAAGGTGTTCATGTACATCACAATCCTGGTGCTTAGGTACCTCTAGCCCAACTTATGTTCTTTTGAATTTTAGTTCGTAGTATCCATTAGGATAGGTATTAAACTACTAACTTGGTCTTTGTTCTTGCCATTGTTTGTAGGATGGCAAGAGTTTGTACCTTCGTATTGATGATTGTTGCCAAAATATTTGTACAACAGGTGATGATGTTTATATGTGAGTTGACTACTGTTTGCTAATAAAGGATTTCTTGGGATTTTTCTCTTTGCAGTCATTGTTCGTGATGTCTTTTACAACCAGCAGTTTGAAGGAAGCAAATGCACTTCAAGTACTTCTAGTTTTCTCACAATTCAAACAAATGAAAGATATTGTTTTACATACTTTACTTCTAAAGATGTACTCTGATCTGATTGATTTTTTTGGTGTGCATATATAATTTGGAAGCTCAAAGAGGGTCTTGCATTCTCTGAAAGAGTCTCTGTTGAGAATTGCCCTTGTGTATCCCAGTGTCTCCTTCAAAAGTGTTGACATTGAAAGGTATGTCTTTGTTACCCCTACTAACTAACAATATTTCTTGTCTGGTTCTTAGATTTTTTCATTTGTATGCAGTGAGGATGATCTGCTTTGCACACGTGCTTCTCCTTCTCTTTCTCCATTGCCGCTATAGTCTGGTGGGTTCAGGATTCGTCTGAGTTTCCTTATCAAATTTAATGCAAACGATGGTTCATTTTAGCTCTCAGGATACATCTCAGGTCAATGTGTAGTCAACGTTTACACAGTGAAGGTATACAGGTCTAAACTGATGGATAAGAGATGTGAATATGCTATCTTTTCTTCTCTTTGTTTCCCTAACAATCACTGTTTAATTTGCAGGTCCTTCTATATTTCTGATCCACTTATTTCCGTATATTTTCTGGACAAAGAAAACGGAAACCTAATGTTTGGTTAGCATTTACTATATCATACATACTTGTTTTTCTGATTGGAGTGTTGTATTTCATATTCCAATGTATTTGCTGCTTCTAAGACCTACAATTCTTCCAGTTTGAACTTAGTCTCCTAGTTTTTACTTATCAATCATTCCTGAACTGATAAGAGCATGGGGAGTCAATAGATGTACACGAGACGGGGAGTCAAAAGAAGGTAAAACAATTCTTGTATTTGTTGCTGACCTGAATAAGAGCTGAATTGTTCTAATGCATGTGTCAATTAATTAGTTTCATTTCTTTCATCCACTTTTCAAGATTATCTTAGACTGCATTTTTATTAACCATGAAAGCATTAGATATTATAATGTCTTTTTCTAAGTTTTGTAACTACATAGTTTCTTCCAAATTCTATCTTGCTTATGTTCTGATCTTGTAATAGAATTGTCATGCCGGACATTTTTTATTCAAATTTTCAGAATTTGCACCAACAAAATCTCAAAGTTTCTTTGTTTATGGGACAAATGGAGGGACTTCCGTCTTGATATTATAGTTGAGTACCTTAGCTATATCTCGGAATGTTTTTGCGTCTTCTCCTCTAATTTGTTAAGATGATGGAGTTTTTTTTTTCCAATATGAGATGCAGAGTGGTACTGGACATAGAATCTGAAGAATCTAGGATACTATACTCAATCTCACCCTGGTGTCTCGCATTTTATTGATGTTCCATTGGTTCCTGATACCACTGATAAATGCTGTCTTGGAGGGTGCCAAAGTTCTCCAACAGTTTGATAAGAAGTTAATTCCGATTGTGTCAAACACAACGCTTGCTATAATTGATCAGGTCTATTCTGGCCTTTGCATAGTCCAATATGGCCATACTCGGTTTCTCATGAATTTCCTTATAATACATTGTAGTCTATAGTATTGCATGGACTACTTTAACTATGGTTTCGTATGCTTCATGTACATCAGCAACATCAAAATACAACATCAAAATACAGCCATTCCGATAATATGCATGCTTTCCCAGTAAACTTTGGCCTTAAAGGAGAGGCTCTGAGCTCTACTTCTGACGTTGCTTTGTTTGGAAGGTGTTGCTAAAACTCAGGGGAGGCCAAATGAACATAGTAAGGTTTTGAAGGTACAGTCCTTTTGAGTTTTAGTTGGTAGTATCCACTAGGATATGTATAAAACTACTAACTTGGTCTTTGTTCGTGCCACGGGCAAGTGTTTGTTCCTTGGAATTGCTGATTGATGTTGGTACAACAGGTAATTCTATACAAGCCTGGTTGACTGCTGTTTGCTAATAAGGAAATTTTGGAACCTTTTTTTTCAGTCATTGTTCATGATGTATTTTACACACAATCAGTTCGAACTTCAAAGGAAACAAATATACTCCAAGTACTTCTAGCTTTCTCACAATCCAAACAAACAAAAAATATTGATTTACTTTGCTTCTTCAGCTGTACTTTGTCATTGTTTGCATATATAATCCGGAAGCCCAAAGAGGGTCTTGCATTCCCTGAAAGAGACTCTGCTAAGATTTGCCCTAGTGCATCCCAGTGTCCCCTACAAAATTGTTGATATTGATAGGTCTGTTTCTGTTAGAGATATTCCAGCTAACTTAAAGGATATTTCCTGTCTGGTATCTTAGATTTTGTTCATTAGCATGCCGTGAGGATGACCTGCTTTGCATGCATGCTTCTCCTTTTCCCCATTGCCACTATTGTCCAGTGGGTTTGGGGTTCACCGTTCATCTGAGTTCCCTTTATAAATTGAATGCAAGCAATGGTTCATTCGGACTCTTAGGATACATCTCAGGTCCTTATGTTTACACTGAGGCCCAAATCGATGGATAAGAGGTGGATAAGTTATCTTTAAACAGTATGTTTCCCTAACAGCCACGTTCAATTTGCAGGTCATTCAATATTTCTGGGGTACTTCAGTATATTTTCCTGACCAAAGAAAAAGGGAAACCTAATCTTTGGTTAACATTTTCTATATCTTATGCTTGTTTTTTAAGGTATTCCTATTTTCCTTGACCCTTGTAATGCAGATATCAATTCCAAAGGACCATACATAAATTACTTGATTACATAGCTATGAGTTTTGACGGTGCTTTTGACATTGAGAAGCAAAGTAGATCTCGGATATATCCACTTTTTTGTTGAACCGCAACTGCCCAAGATCTTTGTATGATTCGACTTTGGAGCCTTCAAAGACCTCTGTGGTATTTAAGGTGAGATTTTTTGTTGAAATTTTATGGTTTAATTTGTTTTGGGGTTAGGAAACAAATGTGAGGCTTTGGATTTATTTTATAGAATTGTGTTTATGTTGGTGTTTGTTTTGTGAGAATTGGTTTGAGTTGTTTTCTATAAAACAATATTTCAAAACACCTAATCATTTTTTGGAACTTCAATATGAGTGAAATTAATAGATTAAAAGTGGCTAAACCATTATTTATTATTAAATCCTATTGGATTACAAAGCATTAAAAGGAACCCCTGACCCCAGCAAGGTCCTTGCATCACAGCTGTTCCCTGAGAACAAAATAATCCCTTTGTTTTGGGAGAACAATGCTAAACCACATTTCTAATCTTCTTTTGGTTTCAAAACCAAACAGGCCAATGTAAACAAGGACATGTCATACATTTGTTTTACTGATTGGAGTACTGTATTTCATAGTACAATGTGCTGTTGTTTCCTGATACTGATAATTCTTCCAGTTTGAACTTAAGTCTCATGGTTTTTGCTTACCCAATCATTTCTGCTTCCTTTAAATGGATTTTGCGGTTTTTAAAAATAATTTACATCAATCTTCTTGGAGCCTTGTTATCATTAAGAAATGGTGAAATCCAGCTATATAATGATTTTTTGATTTCTGATCTAGTATTTTTTGAAATGATATGGTTCTTTGTTGTTCCTCTCTGATTTCTTGGAATTCCTAATAGAAATTTATTGCATACATCGGTAATGCTTGTTAATAAGCTTGTGATAGTTTTGTCACTGCACCACAAGAAGAATATTTGTCATGGGATGTATATTTTTCCCACAAGTATCAATTTTAGATTTTACTTGCCCCAGGGCTTTGGTAAGTGATGAGGACTCAAAAACGGGATTGTGATAGGGAGAATGCCACAAATTTGTTGAATCCTATCATCGACAATGAACCTGATATTTTAGTGGGATCTGGGTAAGGAGGTGGCTCGTATTCTCAGGAGTTTTTAACTTGTAGGTCAATCTGGGCCATTTGATATCACCATAAAATTTTCTGTTATTCAGAAAAAATTTGAGCCCAACCAGAATATTTAGGTTGATCTTCACTCTTCCGCTGCGTAGGTGGGAAACACAGCTTTGACCTATAAATATGCTAACAGTGTTGATCTTTGGCATTATTCTAGAGACTCATTAGCTTTTGAGGATACCTTTTTATGTATCCTTTCAAAAGGTATCAATGTACCTCCTTCATTTTACCAAGGCAATGAAGAAGTTCTTTGCCCCGAGTGAGACTTCAAGAAAGGCAGCAGGAAATAATAATATTAAGACTGTTCATGATGTGCTACTCATGCCAGATAATTTGTCCTTTAGTTCTTGTTTGTATTAATATAAATCAATGGGAACTCGCATAAATGGATTGATGCTGGAAATTGAGGTAAAACAGATGAGCTTATAAGGCAAAAAGATTAAGACTGTTCATGATGTGATGCGAGTGAGTCTTCAATAAAGGCTGGACGAAATAACTATGTTAAGAATGTTTATGTCTTCATGATGTGCCGCTCATACCCTAAGTTGCTCAGACTCTCCAAATATGTTGCTGCACCCATGTGGACTCCTCCAAAATTGCACCACTTTTGAAGGATCTGACACGCACTCGATGACATTTTTGAAGAGTCCGAGAAACATAGCTCATACCAGGCAATTTTTCCTTGAGTGCTTGTTTGTGTTATAATCAATGATGACAGAAAAGGTGTACAACTAATTAATGTTCTTTTCTATCATGCAGCAACTTGAGCAGTATGGAGACTACATCATTCTGCAGAAGCTATCTGCTCGGAGCTTATACAGTTGTCATCCCAACAGTGTGATCCGTATACTTCAGCTAGAACAATTATTTCCTAATTTGCAGATAGATGACTTCATGAACTAGACTAATCTACAATATAAAAAATCATCCTTTTAGTTTTAACAGTTATACAACTGACATTAATTTAAATCCTGGCCATCTAAAGTGTTGGTGTTGGATATTTGATGCGTACTCTTTGATTTAATACCAAATCGAGTAAGGAATTTTCCATTTATATGGTTTTTTTTACTTTCTAATATATAGTTATTGCCTATTGGAACAAGAAATCATCAAATGGAAAATATTAGAAAAACAGTAGTAAAAGTGAGGGCATCGAAAGGCAATAGGCAAACAAATTGCAGCTAACATGCCTACTCCAGCTAAGGTTAGAACATGTAGTTACTGCTCCAGCCAAGGTTTTGGATTATATCATGTTGATGTCTTAAGGTAAAATACAAGAAAAAATTTGAAAAAGTGAGTTACATGTCCAATGTTTAAGGTAGTTTATATCTGAGCTGAGATCTATATACCTGATTTCATTATACAAGCAATAAATAAATAAAGGCTGCTAGTGTGGTTACTGTTAGTCTGAAATGTAACCTGTGTTCCTTGCAAGATATTATTTGGTAGAACTTCCTTCCTAAATTTATTAACTTGGTTATTGCTGTTCTGTGTGTATTCCAAAGTGAGTTTCCAATTTTTCCAGTTTTCTTTGTTTGAATGTCATTTTCACTAAAATGTGACGACATCTCGTTTTGCTATCTAGGTGTTGAATGTGGAACTGGATCTTTGGTTATGGGCTTTTGGCATATGCTCATCTCTTCAACACCACCGGACACTATCTATCTATTATTGACTATAAAAATTAAGCTCCATTTCCATTGCAGTCTTGCATTCAAATGATGGTTCTGGTTTTGGGATTTTCACATTTACATGTCTAGGCGAAATATTACAGAAACTATACAGGATTATTTTCTCCTCCTAGTGGTGGATTTACTTTCTTTAAGGAGTGCAGAGGTTGAATATCAGTTATTTAACCTCTTTCAATCTCATTGAATTTCTGTAAGTTGGCCTACATACATATTTTGTTTT</genome_strand>
        <mrna_strand>AAAGAGCTCAATTTTTTGCTGCTGATTTGTGGGGTGCATTTAAGGGTGAAGGATACGGTGATTTTGAAGACATAAGCTCAATAACCATATTTGCTGA-TATATTGTTTCCAGCTGTCCTTCAGCAACTTGGAGTGCTGAGATATCGTTCTTCCCTGGATAATACTATCAAGAAAAATACTGAAATTGTCTCAGGCAGTGAGGAGGAAGTAGAACTCCGAGCCTGCTCTGTTTATGCTGTGGAGAAAATGAAGGAGTTGATCAGTAAAAAGACTGGGAAGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGAGTGTGGAACTGGATCTCTGGTTATGGGCTTTTGGCATACAATGCCCATCTCTTCAACACCATCGGACACTCTCTGTCTATTATTGACTATA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAAGCTCCATTTCCATTGCAGTCTTGCATACAAATGATGGTTTTGGTTTTGGGATTTTGACATTTACATGTCTAGATGTAATAGTACAGAAATTATACAGGATTATTTTCTCATCCTAGTGGTGAATTTACTTTTTTCAAGGAGTACTGAGGTTGAATATCAGTTATTTAACCTCTTTCAATCTCGTTAGATTTCTGTAAATTGACCTACATACATATTTTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E390277" ref_strand="+" ref_description="SGN-E390277 [TUS-40-K17](-)">
      <seq>aagacataagctcaataaccatatttgctgattatattgttccagctgtccttcagcaacttggagtgctgagatatcgttcttccctggataatattatcaagaaaaatactgaaattgtctcaggcagtgaggaggaagtagaactccgagcctgctctgtttatgctgtggagaaaataaaggagttgatcagtaaaaagactgggaagcaggtgttgagtgttgaactggatctctggttatgggcttttggcatacaatgcccatctcttcaacaccatcggacactctctatctattattgactatagtaattaagctccattttcattgcagtcttgcatacaattatggtcttgattttgggattttgacatttccacgtctagatgtaacagtacagaaattatacaggattattttctcctcttggtggtgaatttacttttttcaaggagtgcagaggagaggttgattatccgtttatgcagtaccttgtataatgttgatgggctcaacactcgggctgtttggttagagttatggatgtattcgtttagatagaatttagtgtaggatgagttattagttattcaaatattagttatataagatttaattatgcacatatattagtcatgaaagatttagttagataggtattagtatgtagatctttttaaaaaaatggtaagcttattcttatttcttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="5455" stop="34991"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5755" g_stop="5969" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5970" i_stop="7101" i_length="1132">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7102" g_stop="7615" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="729" r_length="514" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E390277" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390277" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5755" e_stop="5969"/>
          <exon e_start="7102" e_stop="7615"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGACATAAGCTCAATAACCATATTTGCTGATTATATTGTTCCAGCTGTCCTTCAGCAACTTGGAGTGCTGAGATATCGTTCTTCCCTGGATAATATTATCAAGAAAAATACTGAAATTGTCTCAGGCAGTGAGGAGGAAGTAGAACTCCGAGCCTGCTCTGTTTATGCTGTGGAGAAAATAAAGGAGTTGATCAGTAAAAAGACTGGGAAGCAGGTTGGTCTTGCTCATTTCCATTGTTTTGATGTTCTTTAGTGGTTAGATTTGGTGATTGCTAACTTATACTCAGCCAATTTTGTTGAATGAATATGCATTTTTTTGCATGTGTAAAGCTTGACGTCTCTTATTGACAGGGCTATGAGGAAACGTGCAATATTTCATATACTTCACCCTAGAACAGTTATATCCCGAAGTTTGCAGATAAATGACTTCATGAAATAGAATAATCTACAATATAGAAAATCATTCTTTTAGCTTTAACAGTTGATCGGCTGGTATTAATTGAAATTCTGGCCATCTAGAGTGTTGGTTTTAGATATTTGATGCCTACTCTTCGATTTTAAAACATACAAGTCAACTTGTATGCTTTTTTTTTTTTACTTTCTAATATATAGTTATACCTATTGGAACAAGAAATCATCAAATGGAAATGTTAGAAACACATTCGTAAAAGTGAGCCTTCAAAAGGCAACAGGCAATCAAATTGCAGCTAACATGCCTACTCTAGCTAAGGTTAGAAATATATAGTTATTGCGCCAGCTAAGTTTTTTCTTACATCATGTTGATGTCTTGAGGTTAAATACAAGACTATAAAAAGGTGAGTTACATGTCCAATGGTTAAGGTAAGTTATATCTGAGCTGAGATCTATATACCTGATTTCATTGCTGGCAATAAATAAATAAAGGCTGCACTTGTCGGGGTGGCCCAATGGTTTGAGCTTGGGACTTCCATGTTGGAGGTCTCAAGTTCAAAACCCCTTGCCAGCGAAAGCAAATGGTTTGTTTTCTGGGTCAAGCTCGTCACACTAGGCTTGTCTAGTGCGGGTTACCTCTTCTATGTGATTTGCAAGCTATTGCACAAGAGTAGAGGTTTTACCCTGTGCACACTTAAAGGGTACTGGCTGTAGGTTTCCCTTGTCATCAAAAATAAAAATAAAGGCTGCTACTGTGGTTACTGTTAGTCTGACATGTAAGCTATGTTCCTTGCAAGATATTTGGTAGAATTTTTTCCTTTCTAATATTTATCAACTTGTTATTCCTGTGCTATGTGTATTCTAAAGTGAGTTCCCAATTTACTTTGTTTGAATGCCACTTTTACAAAAATGTGACATCTCATTTTGCTATACAGGTGTTGAGTGTTGAACTGGATCTCTGGTTATGGGCTTTTGGCATACAATGCCCATCTCTTCAACACCATCGGACACTCTCTATCTATTATTGACTATAGTAATTAAGCTCCATTTTCATTGCAGTCTTGCATACAATTATGGTCTTGATTTTGGGATTTTGACATTTCCACGTCTAGATGTAACAGTACAGAAATTATACAGGATTATTTTCTCCTCTTGGTGGTGAATTTACTTTTTTCAAGGAGTGCAGAGGAGAGGTTGATTATCCGTTTATGCAGTACCTTGTATAATGTTGATGGGCTCAACACTCGGGCTGTTTGGTTAGAGTTATGGATGTATTCGTTTAGATAGAATTTAGTGTAGGATGAGTTATTAGTTATTCAAATATTAGTTATATAAGATTTAATTATGCACATATATTAGTCATGAAAGATTTAGTTAGATAGGTATTAGTATGTAGATCTTTTTAAAAAAATGGTAAGCTTATTCTTATTTCTTAATTTCAAAATGTTT</genome_strand>
        <mrna_strand>AAGACATAAGCTCAATAACCATATTTGCTGATTATATTGTTCCAGCTGTCCTTCAGCAACTTGGAGTGCTGAGATATCGTTCTTCCCTGGATAATATTATCAAGAAAAATACTGAAATTGTCTCAGGCAGTGAGGAGGAAGTAGAACTCCGAGCCTGCTCTGTTTATGCTGTGGAGAAAATAAAGGAGTTGATCAGTAAAAAGACTGGGAAGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGAGTGTTGAACTGGATCTCTGGTTATGGGCTTTTGGCATACAATGCCCATCTCTTCAACACCATCGGACACTCTCTATCTATTATTGACTATAGTAATTAAGCTCCATTTTCATTGCAGTCTTGCATACAATTATGGTCTTGATTTTGGGATTTTGACATTTCCACGTCTAGATGTAACAGTACAGAAATTATACAGGATTATTTTCTCCTCTTGGTGGTGAATTTACTTTTTTCAAGGAGTGCAGAGGAGAGGTTGATTATCCGTTTATGCAGTACCTTGTATAATGTTGATGGGCTCAACACTCGGGCTGTTTGGTTAGAGTTATGGATGTATTCGTTTAGATAGAATTTAGTGTAGGATGAGTTATTAGTTATTCAAATATTAGTTATATAAGATTTAATTATGCACATATATTAGTCATGAAAGATTTAGTTAGATAGGTATTAGTATGTAGATCTTTTTAAAAAAATGGTAAGCTTATTCTTATTTCTTAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E338352" ref_strand="+" ref_description="SGN-E338352 [cTOE-13-H16]">
      <seq>atatttgctgattatattgttccagctgtccttcagcaacttggagtgctgagatatcgttcttccctggataatattatcaagaaaaatactgaaattgtctcaggcagtgaggaggaagtagaactccgagcctgctctgtttatgctgtggagaaaataaaggagttgatcagtaaaaagactgggaagcaggtgttgagtgttgaactggatctctggttatgggcttttggcatacaatgcccatctcttcaacaccatcggacactctctatctattattgactatagtaattaagctccattttcattgcagtcttgcatacaattatggtcttgattttgggattttgacatttccacgtctagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="5475" stop="7581"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5775" g_stop="5969" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5970" i_stop="7101" i_length="1132">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7102" g_stop="7281" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="375" r_length="180" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E338352" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338352" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5775" e_stop="5969"/>
          <exon e_start="7102" e_stop="7281"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTTGCTGATTATATTGTTCCAGCTGTCCTTCAGCAACTTGGAGTGCTGAGATATCGTTCTTCCCTGGATAATATTATCAAGAAAAATACTGAAATTGTCTCAGGCAGTGAGGAGGAAGTAGAACTCCGAGCCTGCTCTGTTTATGCTGTGGAGAAAATAAAGGAGTTGATCAGTAAAAAGACTGGGAAGCAGGTTGGTCTTGCTCATTTCCATTGTTTTGATGTTCTTTAGTGGTTAGATTTGGTGATTGCTAACTTATACTCAGCCAATTTTGTTGAATGAATATGCATTTTTTTGCATGTGTAAAGCTTGACGTCTCTTATTGACAGGGCTATGAGGAAACGTGCAATATTTCATATACTTCACCCTAGAACAGTTATATCCCGAAGTTTGCAGATAAATGACTTCATGAAATAGAATAATCTACAATATAGAAAATCATTCTTTTAGCTTTAACAGTTGATCGGCTGGTATTAATTGAAATTCTGGCCATCTAGAGTGTTGGTTTTAGATATTTGATGCCTACTCTTCGATTTTAAAACATACAAGTCAACTTGTATGCTTTTTTTTTTTTACTTTCTAATATATAGTTATACCTATTGGAACAAGAAATCATCAAATGGAAATGTTAGAAACACATTCGTAAAAGTGAGCCTTCAAAAGGCAACAGGCAATCAAATTGCAGCTAACATGCCTACTCTAGCTAAGGTTAGAAATATATAGTTATTGCGCCAGCTAAGTTTTTTCTTACATCATGTTGATGTCTTGAGGTTAAATACAAGACTATAAAAAGGTGAGTTACATGTCCAATGGTTAAGGTAAGTTATATCTGAGCTGAGATCTATATACCTGATTTCATTGCTGGCAATAAATAAATAAAGGCTGCACTTGTCGGGGTGGCCCAATGGTTTGAGCTTGGGACTTCCATGTTGGAGGTCTCAAGTTCAAAACCCCTTGCCAGCGAAAGCAAATGGTTTGTTTTCTGGGTCAAGCTCGTCACACTAGGCTTGTCTAGTGCGGGTTACCTCTTCTATGTGATTTGCAAGCTATTGCACAAGAGTAGAGGTTTTACCCTGTGCACACTTAAAGGGTACTGGCTGTAGGTTTCCCTTGTCATCAAAAATAAAAATAAAGGCTGCTACTGTGGTTACTGTTAGTCTGACATGTAAGCTATGTTCCTTGCAAGATATTTGGTAGAATTTTTTCCTTTCTAATATTTATCAACTTGTTATTCCTGTGCTATGTGTATTCTAAAGTGAGTTCCCAATTTACTTTGTTTGAATGCCACTTTTACAAAAATGTGACATCTCATTTTGCTATACAGGTGTTGAGTGTTGAACTGGATCTCTGGTTATGGGCTTTTGGCATACAATGCCCATCTCTTCAACACCATCGGACACTCTCTATCTATTATTGACTATAGTAATTAAGCTCCATTTTCATTGCAGTCTTGCATACAATTATGGTCTTGATTTTGGGATTTTGACATTTCCACGTCTAGATG</genome_strand>
        <mrna_strand>ATATTTGCTGATTATATTGTTCCAGCTGTCCTTCAGCAACTTGGAGTGCTGAGATATCGTTCTTCCCTGGATAATATTATCAAGAAAAATACTGAAATTGTCTCAGGCAGTGAGGAGGAAGTAGAACTCCGAGCCTGCTCTGTTTATGCTGTGGAGAAAATAAAGGAGTTGATCAGTAAAAAGACTGGGAAGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGAGTGTTGAACTGGATCTCTGGTTATGGGCTTTTGGCATACAATGCCCATCTCTTCAACACCATCGGACACTCTCTATCTATTATTGACTATAGTAATTAAGCTCCATTTTCATTGCAGTCTTGCATACAATTATGGTCTTGATTTTGGGATTTTGACATTTCCACGTCTAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E390389" ref_strand="+" ref_description="SGN-E390389 [TUS-41-K17](-)">
      <seq>tccctggataatattatcaagaaaaatactgaaattgtctcaggcagtgaggaggaagtagaactccgagcctgctctgttattgctgtggagaaaataaaggagttgatcagtaaaaagactgggaagcaggtgttgagtgttgaactggatctctggttatgggcttttggcatacaatgcccatgttttcaacaccattggacactctgtatttattattgactatagtaattaagctccattttcattgcagttttgcatacaattatggtcttgattttgggattttgacatttccaggtttagatgtaacagtacagaaattatacaggattattttctccttttgggggtgaatttacttttttcaaggagtgcagaggagaggttgattatccgtttatgcagttccttgtataatgttgatggggtcaacaatcgggctgttgtggttagagttatggatgtatttgtttagatagaatttagtgtaggatgagttattagttattcaaatattatttatataagatttaattaaacacatatattagtcatgaaagatttagttggataggtattagtatgtagatctttttaaaaaaatggtaaggatattattataagaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="5538" stop="7895"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5838" g_stop="5969" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5970" i_stop="7101" i_length="1132">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7102" g_stop="7579" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="611" r_length="479" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="631" polyA_stop="646"/>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E390389" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390389" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5838" e_stop="5969"/>
          <exon e_start="7102" e_stop="7579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCTGGATAATATTATCAAGAAAAATACTGAAATTGTCTCAGGCAGTGAGGAGGAAGTAGAACTCCGAGCCTGCTCTGTTTATGCTGTGGAGAAAATAAAGGAGTTGATCAGTAAAAAGACTGGGAAGCAGGTTGGTCTTGCTCATTTCCATTGTTTTGATGTTCTTTAGTGGTTAGATTTGGTGATTGCTAACTTATACTCAGCCAATTTTGTTGAATGAATATGCATTTTTTTGCATGTGTAAAGCTTGACGTCTCTTATTGACAGGGCTATGAGGAAACGTGCAATATTTCATATACTTCACCCTAGAACAGTTATATCCCGAAGTTTGCAGATAAATGACTTCATGAAATAGAATAATCTACAATATAGAAAATCATTCTTTTAGCTTTAACAGTTGATCGGCTGGTATTAATTGAAATTCTGGCCATCTAGAGTGTTGGTTTTAGATATTTGATGCCTACTCTTCGATTTTAAAACATACAAGTCAACTTGTATGCTTTTTTTTTTTTACTTTCTAATATATAGTTATACCTATTGGAACAAGAAATCATCAAATGGAAATGTTAGAAACACATTCGTAAAAGTGAGCCTTCAAAAGGCAACAGGCAATCAAATTGCAGCTAACATGCCTACTCTAGCTAAGGTTAGAAATATATAGTTATTGCGCCAGCTAAGTTTTTTCTTACATCATGTTGATGTCTTGAGGTTAAATACAAGACTATAAAAAGGTGAGTTACATGTCCAATGGTTAAGGTAAGTTATATCTGAGCTGAGATCTATATACCTGATTTCATTGCTGGCAATAAATAAATAAAGGCTGCACTTGTCGGGGTGGCCCAATGGTTTGAGCTTGGGACTTCCATGTTGGAGGTCTCAAGTTCAAAACCCCTTGCCAGCGAAAGCAAATGGTTTGTTTTCTGGGTCAAGCTCGTCACACTAGGCTTGTCTAGTGCGGGTTACCTCTTCTATGTGATTTGCAAGCTATTGCACAAGAGTAGAGGTTTTACCCTGTGCACACTTAAAGGGTACTGGCTGTAGGTTTCCCTTGTCATCAAAAATAAAAATAAAGGCTGCTACTGTGGTTACTGTTAGTCTGACATGTAAGCTATGTTCCTTGCAAGATATTTGGTAGAATTTTTTCCTTTCTAATATTTATCAACTTGTTATTCCTGTGCTATGTGTATTCTAAAGTGAGTTCCCAATTTACTTTGTTTGAATGCCACTTTTACAAAAATGTGACATCTCATTTTGCTATACAGGTGTTGAGTGTTGAACTGGATCTCTGGTTATGGGCTTTTGGCATACAATGCCCATCTCTTCAACACCATCGGACACTCTCTATCTATTATTGACTATAGTAATTAAGCTCCATTTTCATTGCAGTCTTGCATACAATTATGGTCTTGATTTTGGGATTTTGACATTTCCACGTCTAGATGTAACAGTACAGAAATTATACAGGATTATTTTCTCCTCTTGGTGGTGAATTTACTTTTTTCAAGGAGTGCAGAGGAGAGGTTGATTATCCGTTTATGCAGTACCTTGTATAATGTTGATGGGCTCAACACTCGGGCTGTT-TGGTTAGAGTTATGGATGTATTCGTTTAGATAGAATTTAGTGTAGGATGAGTTATTAGTTATTCAAATATTAGTTATATAAGATTTAATTATGCACATATATTAGTCATGAAAGATTTAGTTAGATAGGTATTAGTATGTAGATCTTTTTAAAAAAATG</genome_strand>
        <mrna_strand>TCCCTGGATAATATTATCAAGAAAAATACTGAAATTGTCTCAGGCAGTGAGGAGGAAGTAGAACTCCGAGCCTGCTCTGTTATTGCTGTGGAGAAAATAAAGGAGTTGATCAGTAAAAAGACTGGGAAGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGAGTGTTGAACTGGATCTCTGGTTATGGGCTTTTGGCATACAATGCCCATGTTTTCAACACCATTGGACACTCTGTATTTATTATTGACTATAGTAATTAAGCTCCATTTTCATTGCAGTTTTGCATACAATTATGGTCTTGATTTTGGGATTTTGACATTTCCAGGTTTAGATGTAACAGTACAGAAATTATACAGGATTATTTTCTCCTTTTGGGGGTGAATTTACTTTTTTCAAGGAGTGCAGAGGAGAGGTTGATTATCCGTTTATGCAGTTCCTTGTATAATGTTGATGGGGTCAACAATCGGGCTGTTGTGGTTAGAGTTATGGATGTATTTGTTTAGATAGAATTTAGTGTAGGATGAGTTATTAGTTATTCAAATATTATTTATATAAGATTTAATTAAACACATATATTAGTCATGAAAGATTTAGTTGGATAGGTATTAGTATGTAGATCTTTTTAAAAAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E302128" ref_strand="+" ref_description="SGN-E302128 [cLEW-19-D19]">
      <seq>aggattcgtctgagtttccttatcaaatttaatgcaaacgatggttcattttagctctcaggatacatctcaggtcaatgtgtagtcaacgtttacacagtgaaggtccttctatatttctgatccacttatttccgtatattttctggacaaagaaaacggaaacctaatgtttgtttgaacttagtctcctagtttttacttatcaatcattcctgaactgataagagcatggggagtcaatagatgtacacgagacggggagtcaaaagaagagtggtactggacatagaatctgaagaatctaggatactatactcaatctcaccctggtgtctcgcattttattgatgttccattggttcctgataccactgataaatgctgtcttggagggtgccaaagttctccaacagtttgataagaagttaattccgattgtgtcaaacacaacgcttgctataattgatcaggtctattctggcctttgcatagtccaatatggccatactcggtttctcatgaatttccttataatacattgtagtctatagtattgcatggactactttaactatggtttcgtatgcttcatgtacatcagcaacatcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="14185" stop="16017"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14485" g_stop="14589" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14590" i_stop="14678" i_length="89">
            <donor d_prob="0.730" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14679" g_stop="14749" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="176" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14750" i_stop="14849" i_length="100">
            <donor d_prob="0.647" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14850" g_stop="14948" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="275" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14949" i_stop="15377" i_length="429">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.570" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15378" g_stop="15717" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="615" r_length="340" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E302128" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14485" e_stop="14589"/>
          <exon e_start="14679" e_stop="14749"/>
          <exon e_start="14850" e_stop="14948"/>
          <exon e_start="15378" e_stop="15717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGATTCGTCTGAGTTTCCTTATCAAATTTAATGCAAACGATGGTTCATTTTAGCTCTCAGGATACATCTCAGGTCAATGTGTAGTCAACGTTTACACAGTGAAGGTATACAGGTCTAAACTGATGGATAAGAGATGTGAATATGCTATCTTTTCTTCTCTTTGTTTCCCTAACAATCACTGTTTAATTTGCAGGTCCTTCTATATTTCTGATCCACTTATTTCCGTATATTTTCTGGACAAAGAAAACGGAAACCTAATGTTTGGTTAGCATTTACTATATCATACATACTTGTTTTTCTGATTGGAGTGTTGTATTTCATATTCCAATGTATTTGCTGCTTCTAAGACCTACAATTCTTCCAGTTTGAACTTAGTCTCCTAGTTTTTACTTATCAATCATTCCTGAACTGATAAGAGCATGGGGAGTCAATAGATGTACACGAGACGGGGAGTCAAAAGAAGGTAAAACAATTCTTGTATTTGTTGCTGACCTGAATAAGAGCTGAATTGTTCTAATGCATGTGTCAATTAATTAGTTTCATTTCTTTCATCCACTTTTCAAGATTATCTTAGACTGCATTTTTATTAACCATGAAAGCATTAGATATTATAATGTCTTTTTCTAAGTTTTGTAACTACATAGTTTCTTCCAAATTCTATCTTGCTTATGTTCTGATCTTGTAATAGAATTGTCATGCCGGACATTTTTTATTCAAATTTTCAGAATTTGCACCAACAAAATCTCAAAGTTTCTTTGTTTATGGGACAAATGGAGGGACTTCCGTCTTGATATTATAGTTGAGTACCTTAGCTATATCTCGGAATGTTTTTGCGTCTTCTCCTCTAATTTGTTAAGATGATGGAGTTTTTTTTTTCCAATATGAGATGCAGAGTGGTACTGGACATAGAATCTGAAGAATCTAGGATACTATACTCAATCTCACCCTGGTGTCTCGCATTTTATTGATGTTCCATTGGTTCCTGATACCACTGATAAATGCTGTCTTGGAGGGTGCCAAAGTTCTCCAACAGTTTGATAAGAAGTTAATTCCGATTGTGTCAAACACAACGCTTGCTATAATTGATCAGGTCTATTCTGGCCTTTGCATAGTCCAATATGGCCATACTCGGTTTCTCATGAATTTCCTTATAATACATTGTAGTCTATAGTATTGCATGGACTACTTTAACTATGGTTTCGTATGCTTCATGTACATCAGCAACATCAAAA</genome_strand>
        <mrna_strand>AGGATTCGTCTGAGTTTCCTTATCAAATTTAATGCAAACGATGGTTCATTTTAGCTCTCAGGATACATCTCAGGTCAATGTGTAGTCAACGTTTACACAGTGAAG.........................................................................................GTCCTTCTATATTTCTGATCCACTTATTTCCGTATATTTTCTGGACAAAGAAAACGGAAACCTAATGTTTG....................................................................................................TTTGAACTTAGTCTCCTAGTTTTTACTTATCAATCATTCCTGAACTGATAAGAGCATGGGGAGTCAATAGATGTACACGAGACGGGGAGTCAAAAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGTACTGGACATAGAATCTGAAGAATCTAGGATACTATACTCAATCTCACCCTGGTGTCTCGCATTTTATTGATGTTCCATTGGTTCCTGATACCACTGATAAATGCTGTCTTGGAGGGTGCCAAAGTTCTCCAACAGTTTGATAAGAAGTTAATTCCGATTGTGTCAAACACAACGCTTGCTATAATTGATCAGGTCTATTCTGGCCTTTGCATAGTCCAATATGGCCATACTCGGTTTCTCATGAATTTCCTTATAATACATTGTAGTCTATAGTATTGCATGGACTACTTTAACTATGGTTTCGTATGCTTCATGTACATCAGCAACATCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E238082" ref_strand="+" ref_description="SGN-E238082 [cLED-22-A2]">
      <seq>tttttaaggtattcctattttccttgacccttgtaatgcagatatcaattccaaaggaccatacataatattacttgattacatagctatgagttttgacggtgcttttgacattgagaagcaaagtagatctcggatatatccacttttttgttgaaccgcaactgcccaagatctttgtatgattcgactttggagccttcaaagacctctgtggtatttaagagcttcgtgaagcggagatggaattggggagagatcaaatagccctagctagattctcaagcttggattcaccccaaaaggtcgaaaagcccttctttaagctttcttattcgctttttagcgcataacttactctctcacttatattcaagatacatggtatttgttcaaagttcatgataagttagaatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="16450" stop="25642"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16750" g_stop="16973" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16974" i_stop="25148" i_length="8175">
            <donor d_prob="0.882" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25149" g_stop="25342" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="419" r_length="194" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E238082" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238082" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16750" e_stop="16973"/>
          <exon e_start="25149" e_stop="25342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTAAGGTATTCCTATTTTCCTTGACCCTTGTAATGCAGATATCAATTCCAAAGGACCATACATAA-ATTACTTGATTACATAGCTATGAGTTTTGACGGTGCTTTTGACATTGAGAAGCAAAGTAGATCTCGGATATATCCACTTTTTTGTTGAACCGCAACTGCCCAAGATCTTTGTATGATTCGACTTTGGAGCCTTCAAAGACCTCTGTGGTATTTAAGGTGAGATTTTTTGTTGAAATTTTATGGTTTAATTTGTTTTGGGGTTAGGAAACAAATGTGAGGCTTTGGATTTATTTTATAGAATTGTGTTTATGTTGGTGTTTGTTTTGTGAGAATTGGTTTGAGTTGTTTTCTATAAAACAATATTTCAAAACACCTAATCATTTTTTGGAACTTCAATATGAGTGAAATTAATAGATTAAAAGTGGCTAAACCATTATTTATTATTAAATCCTATTGGATTACAAAGCATTAAAAGGAACCCCTGACCCCAGCAAGGTCCTTGCATCACAGCTGTTCCCTGAGAACAAAATAATCCCTTTGTTTTGGGAGAACAATGCTAAACCACATTTCTAATCTTCTTTTGGTTTCAAAACCAAACAGGCCAATGTAAACAAGGACATGTCATACATTTGTTTTACTGATTGGAGTACTGTATTTCATAGTACAATGTGCTGTTGTTTCCTGATACTGATAATTCTTCCAGTTTGAACTTAAGTCTCATGGTTTTTGCTTACCCAATCATTTCTGCTTCCTTTAAATGGATTTTGCGGTTTTTAAAAATAATTTACATCAATCTTCTTGGAGCCTTGTTATCATTAAGAAATGGTGAAATCCAGCTATATAATGATTTTTTGATTTCTGATCTAGTATTTTTTGAAATGATATGGTTCTTTGTTGTTCCTCTCTGATTTCTTGGAATTCCTAATAGAAATTTATTGCATACATCGGTAATGCTTGTTAATAAGCTTGTGATAGTTTTGTCACTGCACCACAAGAAGAATATTTGTCATGGGATGTATATTTTTCCCACAAGTATCAATTTTAGATTTTACTTGCCCCAGGGCTTTGGTAAGTGATGAGGACTCAAAAACGGGATTGTGATAGGGAGAATGCCACAAATTTGTTGAATCCTATCATCGACAATGAACCTGATATTTTAGTGGGATCTGGGTAAGGAGGTGGCTCGTATTCTCAGGAGTTTTTAACTTGTAGGTCAATCTGGGCCATTTGATATCACCATAAAATTTTCTGTTATTCAGAAAAAATTTGAGCCCAACCAGAATATTTAGGTTGATCTTCACTCTTCCGCTGCGTAGGTGGGAAACACAGCTTTGACCTATAAATATGCTAACAGTGTTGATCTTTGGCATTATTCTAGAGACTCATTAGCTTTTGAGGATACCTTTTTATGTATCCTTTCAAAAGGTATCAATGTACCTCCTTCATTTTACCAAGGCAATGAAGAAGTTCTTTGCCCCGAGTGAGACTTCAAGAAAGGCAGCAGGAAATAATAATATTAAGACTGTTCATGATGTGCTACTCATGCCAGATAATTTGTCCTTTAGTTCTTGTTTGTATTAATATAAATCAATGGGAACTCGCATAAATGGATTGATGCTGGAAATTGAGGTAAAACAGATGAGCTTATAAGGCAAAAAGATTAAGACTGTTCATGATGTGATGCGAGTGAGTCTTCAATAAAGGCTGGACGAAATAACTATGTTAAGAATGTTTATGTCTTCATGATGTGCCGCTCATACCCTAAGTTGCTCAGACTCTCCAAATATGTTGCTGCACCCATGTGGACTCCTCCAAAATTGCACCACTTTTGAAGGATCTGACACGCACTCGATGACATTTTTGAAGAGTCCGAGAAACATAGCTCATACCAGGCAATTTTTCCTTGAGTGCTTGTTTGTGTTATAATCAATGATGACAGAAAAGGTGTACAACTAATTAATGTTCTTTTCTATCATGCAGCAACTTGAGCAGTATGGAGACTACATCATTCTGCAGAAGCTATCTGCTCGGAGCTTATACAGTTGTCATCCCAACAGTGTGATCCGTATACTTCAGCTAGAACAATTATTTCCTAATTTGCAGATAGATGACTTCATGAACTAGACTAATCTACAATATAAAAAATCATCCTTTTAGTTTTAACAGTTATACAACTGACATTAATTTAAATCCTGGCCATCTAAAGTGTTGGTGTTGGATATTTGATGCGTACTCTTTGATTTAATACCAAATCGAGTAAGGAATTTTCCATTTATATGGTTTTTTTTACTTTCTAATATATAGTTATTGCCTATTGGAACAAGAAATCATCAAATGGAAAATATTAGAAAAACAGTAGTAAAAGTGAGGGCATCGAAAGGCAATAGGCAAACAAATTGCAGCTAACATGCCTACTCCAGCTAAGGTTAGAACATGTAGTTACTGCTCCAGCCAAGGTTTTGGATTATATCATGTTGATGTCTTAAGGTAAAATACAAGAAAAAATTTGAAAAAGTGAGTTACATGTCCAATGTTTAAGGTAGTTTATATCTGAGCTGAGATCTATATACCTGATTTCATTATACAAGCAATAAATAAATAAAGGCTGCTAGTGTGGTTACTGTTAGTCTGAAATGTAACCTGTGTTCCTTGCAAGATATTATTTGGTAGAACTTCCTTCCTAAATTTATTAACTTGGTTATTGCTGTTCTGTGTGTATTCCAAAGTGAGTTTCCAATTTTTCCAGTTTTCTTTGTTTGAATGTCATTTTCACTAAAATGTGACGACATCTCGTTTTGCTATCTAGGTGTTGAATGTGGAACTGGATCTTTGGTTATGGGCTTTTGGCATATGCTCATCTCTTCAACACCACCGGACACTATCTATCTATTATTGACTATAAAAATTAAGCTCCATTTCCATTGCAGTCTTGCATTCAAATGATGGTTCTGGTTTTGGGATTTTCACATTTACATGTCTAGGCGAAATATTACAGAAACTATACAGGATTATTTTCTCCTCCTAGTGGTGGATTTACTTTCTTTAAGGAGTGCAGAGGTTGAATATCAGTTATTTAACCTCTTTCAATCTCATTGAATTTCTGTAAGTTGGCCTACATACATATTTTGTTTTATTTTATTTTTATGGTAAATGTTGGCTGGAGATGTGCCTCACTTTTTGCTGAATTGGTCTTATTTATCCTGTGTTTTTTGTTGCCTTTGACTGTTGTCATGATTTATTTTTTTTTATGTTGGAGACATTTCTGTGAGAATCCTTTTTAAACCTCATTTGCTTCATGGACTCTGGAAAATACGTTACTCTTTCCTATTTATAAAATACGTCAATGTTTTAACTCTGAAAATTCACGAGAGGCAGCAACATTAGGATGATTAGTCCAAGTATGAAGTTTACCATGTTCCGATTTAAAAATTATTTATGGTCTCACTGGTGATACCGAGCTATTACATTTTCAAGAACATGTCTACATCTTTAGATGTTAAGAAGGTCTAGTTAGGCTTCATGCATCTCACCTTTGCTTCTTTCAACTTGGTCATACAATTCCAGCAGTAGCTGTACATGCATATACCATGCTCAAGAGCTAGCATCCATGTTGCAGCTGCTCCCTTGTTGATGGAGCAAAGGATTTTTGGTGATTGGCAGGTTTCCATCATAAGTACATTGTGGAATTCCTGGATTCCTTATAAGCCTTGGCCCAAGGGGCACTTTATTGACCTTTGGGCGAATATCCTGCATCAAACAAGTGATTCTGTTGGAATAAAACAGAACTTCCTGCTCATGAAAACCAGCAATAGAGGCCGATTTCTTAGAACCAGGTTTAAATAGTTCTAGATCAATTTCAGTTACCTGTATCTATTATTTTTAATTACCCACATAATGTGGTTTCATTCGACACTTGCAAGGAATTTCAGTCCTGATCATGTGATAAACATTGATTTTGATTCTAAGAGGATATAAGATCGTGTCGGACTAGACTGCTTACTTTATCTTCCATGAATAAGAAATGAGAAAACTATTTGTGTGTGCAGCTTATTTGTCCGATAATCCAATAAGGTATTTAAATAAGCATAGCACTGGGGGAAAAAAGCCATCTTAGAAAGAAATTTGGAGGAAAAGTTTAGAAGGAAAAGATTATGTAGAGACTGAAGCAACTTGTAAGCCTTTTAAGTCATTAGTATTTAGAATTATGTGATGAGCATTGAACAAAATCTCATCTTCGTAGTTATTTGTCCCCAGCACAAGAAGATTCAGAAATCAGAAGGAAATGTGTACCATGACTTACTAATTCAGCTATAGGCTTATAAACTGTATCAGAAAAGATATTTATTTTGCTTGTGTGAACTCCAAAGGTATTTAGTAAAAGATGCGACTCCTTCGATACACAATCCTTATTAGTATTATTGTTATTTATTTTTGTTTCAGATTAGGAACCGGAAAAAACAAATTCATTGCTTGCTAGTTGTTCTTAGAGATGCAACTTAACCGGCGCTTAGACACATCCAAACTCAAGGTATTTCTGAGAAAAGCAATATAACAGACCTAGAGATGCGTCCCAAACTTGGTTATCTCCAGTGTTCGTATATGGAAAATATTTCTTTTAAAAGAACATTGGACATGAGATAAACTTGGTTATCTCCAGAGTTCGTACATGCAGAATATTTCTTTTAAAGAACATTGGACATAAGATTGTAGAGGAACATTGACTTTGGTTAGCTCATTCGTCTATGGTTTCTTCCATGTGTGCTTCCTACTGACTTCCATGAGCTTCTTAGAATTGTTCTTGCGGATATTTATTGCCTCTAGCTTAATCTGGTGAAAGATATTTTACTGATTGATCTACTTCAGATAACTGAACAATTTCACCAATTCCTTCTTCCATTTGCTCGTCTAGCCCATCTGTTGTCAATAAGCTGGTAAAAATTTCCTAGTGATGATGTATCTTGTCATAGCTGGCTTCTCTAAAGTTACATATATATTCATGTGCTGATTACTGATATTATGCTATAGATTGTAGTTCTACCTACTAAAATAGCTTGGATTTCAGTCATTGCATAGAATTATTAGTTTGCAGTTGCTATCAGAGAGGATGTTCCTATAAGATGCCTTGACTTAGTATGATATTTCCATTGATTACTCCATGCTTAATAATAGCTCAGTGCCCCAGAAGATATAGAAATTTCAGATATTGGAATCACATTTATTGGACCTGTAGGTTGCAACTCTTATATTATCTTTAATTGAACCCTGAGAAGTACTAGTACCTGGTCAAAAATAGCTGTTGGGATGGCAAGGGTGGCAACAGCATTGGGGGCATCAACAATTCCTGAAATCCTTCCTTCGCATGGACAGCACGAAAGTAAAAGATAAACCTGATAGCACCAGCATAATGTTTATATCAGCAATTCCTGAATGTTAATGTTATCTGTTCCCGAGAGTATTCTGTTACAAGAAGATTTTCGGGGAGAGTTTTAATACCTGTTCCTTTGAGTAGCCAAATTTTGAGAGGTAATCAATTGCATTTAGTACTGCACGCTTGTATGCAACACTGGCATCAAGATAGTGTTGTTGTCCACTTTCATCTACACTGATGCCCTCAAACACCAACCACTCCGAGAATCTTGGCTCCATGGGTCCTATCTCAAAAATTGGGTTCACATGTAGTGATGTGGGTCCCATTGGAGTGAGATATTCTTTCATTCCGTTTCTTATAATCTCACACCTGTTTACAAGAAAAAAAACGTAAATCTAAATCTAGTAAAGATCTATTGTTAGCTTATAAATGCTGAGGTGTAGCGCATAGAAAGAAAGGCACTTGATGCAAAACGAGTGGTGCTTAAGGAGGTCTGTTATTGTGTTCTTGCTAATGAAAATTAAAGTTAATAGCTGGTGTTGTTTTCAGGTTGTGTTTCATAGTTCAGGTTCACATATAAAAAAGGTTATAGGACGTTAGAAATAAATAAGATTTAGGAGTATGTAGTTTTTAGTTTGTTTTTAAAATATACATATCCAAATTACATTATACATTTTTTGGCTTCTTCATAGTTATGCTCCAGCGATTAATTGATAAAGAATTAGGTGAGCTAAGCGTAAGTGACTTCCCAACTTGGGTGTTTCCAACATGGTACATATTTTTCTTTTTAAGAAAAAGGCTGTTCTATTGAAATTCTTCACTTAATCCTGGGAACCACTTGCTCTATGCCAATACGGATACCTTTGCAACTCTTATAGTATATTTTTGAGTACCTTAAGATAAAGAATATAGATGTAGCATATAAGCAGTGATGTGAAAGAGGGTGGCATAGTAAATAACACAGTCATTAATGGAGCCCAGTTTTGAAGTTATAATGTGCTTGTTGATGCAAAGGATTGATACTGATAACAGTCAATTCCAGTGCAGCAAAAGATTATTTAGTCATGACAATTTAGCGCTAAATTGAGATGTGGAAAGTACTTGAGCTCTAGGAAGCCACTCATCTCAATTGCCCCACAAAATGATACTTCACCGTCACCTTGAGAAAAATGCATATCACCAGTACTGAGGTTTGCTCCTTCTACAAATACTGGAAGGTATATTTTTGAACCTCTGCTGAGATTTTTGATGTCACAGTTTCCTCCATTTTCACGTCCAGGTATTGTTCTTGCAGCCTCGTTGGCAATTCTAATCCACTCAGGAGTTCCATCTTGAATCTACATTATAATCATGAGTTGTCAAAAAAAAAATTTATGTGCTTGACAGTGAAGTTTGTTTGTTCATTCTCTTCTCTATTCAGTTTGTTTAACATATTACTATGACTCTTTATCATATTCTGTTTACTGTTTACAATAAAGTTAGGCTGCAGTTTTGTTGACAAGGAATTTGTCTTTTGTTTTTTTACAGAATTTGGTTTGGATTGACAGAACATGTAACTTTTAGGGAATGACAAAGTTGTCAGTTCCTGAAACAATTGCAAACCAATCATACCTTGCCAAGAATGCACCCTTTTGTTGAAGGTAGGTTAGCCAATGGTCTAGAATGCAAGACCTCACATAATTTGAGAGATCGGGGACCTGTTTCTTCGAGCTTTCTTTCCCTCTCATTCCATATATTGAGTAGTTCTTTTGAAGGCGCTGTTCCAATTATTCCAGGATGAATTAAACCAGGAAATCTTACACCTGTTTGTGAGATTTTTCAGTAGATCTTATTAGGATTAGATACGTATATTTGTCTAGGATATATTAGGAGAAGATATGCAGCCTTACCTGGTATATGAGGTGAGTAGGCATATATGCCTTCGAAATACCAAATAGCTTTAGTTGCACGGGGAAAATGGTCTGTTAGAAATCCTCCACCGTTCTCTCTGTCGAATATTGCTGTAAAACCCCATTCATCTCCAGGGAGAGGCCCTAAGTTGCATATTTCAACAGCAAGGAGATCACCTGGTTCAGCAGGATTTCCATCTGTGTCAACGACTCGTATTGGCCCACTGAGATAATGCACCTGCATAGGAGAGTTATATGATTCAGCCTGAAGTGATATCCAACATCATATGACTTAGGATCTAGTACTCTTTCTTGGTTAGATGCACCGGGTATGTTAGATTATGCACACTTACAGTGGATAGATCAACGGTTTTTACATCAATTGCAGAGTTATTATCTTGGATAGAGCCTGCTGTCCAATCAACCATCTCAATTCGGAACATCTCCCCTGTTTTAATCTCTGTTACAGGAGGTATCTCTGGGTGCCAACGGTTGTGGAGTGGCAACTTTTGTTGCCATGGCTTTTTCTTTAGGTCTATGGGGATTACTAGTCTTGGAGTTGGAGGAGCCATGGTGACTTAGTGTTCTGTGAATCTCTGAGCCTGTTTACTTCCATTACATGGCACTCTAAGGAAAGCAACTGACAAGGTTCCTAGCTGATTGGGACAAGGTTGCTAGTTGACAAATGGGGGTCACATCTCAGTAATTGTCACGGTTTGCCTTCTTGAAAATGACAATAAATATTGGACAGTGGACAGACTTGACGTTAGTATTTATCGCTTAGTGAGTATATTCAACTTGGAAAACTCAGCTCAATCCAGGCCAGTAAAATCAGAGCAAGAAATAACCCTTTCTAGCTTGAAAACAATGACATAAGAGTGTTGTGAAGAACTCACAACAGACAGATCCGCATGCTTGATGTCCTCGGCAGTATAGTCTATTGTTAGGCCGCCTCCACTAAAATCCAACATCTCAACCCTGAACACCTACCCAACTCGCACCTCTGCTACTGGAGGTATCTCCAGGTGCCACCGGTTGTGAGTAGGTGGATTTTGCTCAAATGGCTTCTTTTTTAAATCTACCTGCACTACTAACCTTGGACCCATTGAATTCATATTTTTTTTTCCTATGCAGAGCTTCGTGAAGCGGAGATGGAATTGGGGAGAGATCAAATAGCCCTAGCTAGATTCTCAAGCTTGGATTCACCCGAAAAGGTCGAAAAGCCCTTCTTTAAGCTTTCTTATTCGCTTTTTAGCGCATAACTTACTCTCTCACTTATATTCAAGATACATGGTATTTGTTCAAAGTTCATGATAAGTTAGAATATG</genome_strand>
        <mrna_strand>TTTTTAAGGTATTCCTATTTTCCTTGACCCTTGTAATGCAGATATCAATTCCAAAGGACCATACATAATATTACTTGATTACATAGCTATGAGTTTTGACGGTGCTTTTGACATTGAGAAGCAAAGTAGATCTCGGATATATCCACTTTTTTGTTGAACCGCAACTGCCCAAGATCTTTGTATGATTCGACTTTGGAGCCTTCAAAGACCTCTGTGGTATTTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTCGTGAAGCGGAGATGGAATTGGGGAGAGATCAAATAGCCCTAGCTAGATTCTCAAGCTTGGATTCACCCCAAAAGGTCGAAAAGCCCTTCTTTAAGCTTTCTTATTCGCTTTTTAGCGCATAACTTACTCTCTCACTTATATTCAAGATACATGGTATTTGTTCAAAGTTCATGATAAGTTAGAATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E235852" ref_strand="+" ref_description="SGN-E235852 [cLED-15-F14]">
      <seq>gaatccaggaattccacaatgtacttatgatggaaacctgccaatcaccaaaaatcctttgctccatcaacaagggagcagctgcaacatggatgctagctcttgagcatggtatatgcatgtacagctactgctggaattgtatgaccaagttgaaagaagcaaagattagtctagttcatgaagtcatctatctgcaaattaggaaataattgttctagctgaagtatacggatcacactgttgggatgacaactgtataagctccgagcagatagcttctgcagaatgatgtagtctccatactgctcaagttgctgcatgatagaaaagaacattaattagttgtacaccttttctgtcatcattgattataacacaaacaagcactcaaggaaaaattgcctggtatgagctatgtttctcggactcttcaaaaatgtcatcgagtgcgtgtcagatccttcaaaagtggtgcaattttggaggagtccacatgggtgcagcaacatatttggagagtctgagcaacttanggtatgagcggcacatcatgaagacataaacattcttaacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="20754" stop="18176"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20454" g_stop="20288" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20287" i_stop="18888" i_length="1400">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.322" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18887" g_stop="18476" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="579" r_length="412" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E235852" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235852" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20454" e_stop="20288"/>
          <exon e_start="18887" e_stop="18476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCAGGAATTCCACAATGTACTTATGATGGAAACCTGCCAATCACCAAAAATCCTTTGCTCCATCAACAAGGGAGCAGCTGCAACATGGATGCTAGCTCTTGAGCATGGTATATGCATGTACAGCTACTGCTGGAATTGTATGACCAAGTTGAAAGAAGCAAAGGTGAGATGCATGAAGCCTAACTAGACCTTCTTAACATCTAAAGATGTAGACATGTTCTTGAAAATGTAATAGCTCGGTATCACCAGTGAGACCATAAATAATTTTTAAATCGGAACATGGTAAACTTCATACTTGGACTAATCATCCTAATGTTGCTGCCTCTCGTGAATTTTCAGAGTTAAAACATTGACGTATTTTATAAATAGGAAAGAGTAACGTATTTTCCAGAGTCCATGAAGCAAATGAGGTTTAAAAAGGATTCTCACAGAAATGTCTCCAACATAAAAAAAAATAAATCATGACAACAGTCAAAGGCAACAAAAAACACAGGATAAATAAGACCAATTCAGCAAAAAGTGAGGCACATCTCCAGCCAACATTTACCATAAAAATAAAATAAAACAAAATATGTATGTAGGCCAACTTACAGAAATTCAATGAGATTGAAAGAGGTTAAATAACTGATATTCAACCTCTGCACTCCTTAAAGAAAGTAAATCCACCACTAGGAGGAGAAAATAATCCTGTATAGTTTCTGTAATATTTCGCCTAGACATGTAAATGTGAAAATCCCAAAACCAGAACCATCATTTGAATGCAAGACTGCAATGGAAATGGAGCTTAATTTTTATAGTCAATAATAGATAGATAGTGTCCGGTGGTGTTGAAGAGATGAGCATATGCCAAAAGCCCATAACCAAAGATCCAGTTCCACATTCAACACCTAGATAGCAAAACGAGATGTCGTCACATTTTAGTGAAAATGACATTCAAACAAAGAAAACTGGAAAAATTGGAAACTCACTTTGGAATACACACAGAACAGCAATAACCAAGTTAATAAATTTAGGAAGGAAGTTCTACCAAATAATATCTTGCAAGGAACACAGGTTACATTTCAGACTAACAGTAACCACACTAGCAGCCTTTATTTATTTATTGCTTGTATAATGAAATCAGGTATATAGATCTCAGCTCAGATATAAACTACCTTAAACATTGGACATGTAACTCACTTTTTCAAATTTTTTCTTGTATTTTACCTTAAGACATCAACATGATATAATCCAAAACCTTGGCTGGAGCAGTAACTACATGTTCTAACCTTAGCTGGAGTAGGCATGTTAGCTGCAATTTGTTTGCCTATTGCCTTTCGATGCCCTCACTTTTACTACTGTTTTTCTAATATTTTCCATTTGATGATTTCTTGTTCCAATAGGCAATAACTATATATTAGAAAGTAAAAAAAACCATATAAATGGAAAATTCCTTACTCGATTTGGTATTAAATCAAAGAGTACGCATCAAATATCCAACACCAACACTTTAGATGGCCAGGATTTAAATTAATGTCAGTTGTATAACTGTTAAAACTAAAAGGATGATTTTTTATATTGTAGATTAGTCTAGTTCATGAAGTCATCTATCTGCAAATTAGGAAATAATTGTTCTAGCTGAAGTATACGGATCACACTGTTGGGATGACAACTGTATAAGCTCCGAGCAGATAGCTTCTGCAGAATGATGTAGTCTCCATACTGCTCAAGTTGCTGCATGATAGAAAAGAACATTAATTAGTTGTACACCTTTTCTGTCATCATTGATTATAACACAAACAAGCACTCAAGGAAAAATTGCCTGGTATGAGCTATGTTTCTCGGACTCTTCAAAAATGTCATCGAGTGCGTGTCAGATCCTTCAAAAGTGGTGCAATTTTGGAGGAGTCCACATGGGTGCAGCAACATATTTGGAGAGTCTGAGCAACTTAGGGTATGAGCGGCACATCATGAAGACATAAACATTCTTAACATA</genome_strand>
        <mrna_strand>GAATCCAGGAATTCCACAATGTACTTATGATGGAAACCTGCCAATCACCAAAAATCCTTTGCTCCATCAACAAGGGAGCAGCTGCAACATGGATGCTAGCTCTTGAGCATGGTATATGCATGTACAGCTACTGCTGGAATTGTATGACCAAGTTGAAAGAAGCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGTCTAGTTCATGAAGTCATCTATCTGCAAATTAGGAAATAATTGTTCTAGCTGAAGTATACGGATCACACTGTTGGGATGACAACTGTATAAGCTCCGAGCAGATAGCTTCTGCAGAATGATGTAGTCTCCATACTGCTCAAGTTGCTGCATGATAGAAAAGAACATTAATTAGTTGTACACCTTTTCTGTCATCATTGATTATAACACAAACAAGCACTCAAGGAAAAATTGCCTGGTATGAGCTATGTTTCTCGGACTCTTCAAAAATGTCATCGAGTGCGTGTCAGATCCTTCAAAAGTGGTGCAATTTTGGAGGAGTCCACATGGGTGCAGCAACATATTTGGAGAGTCTGAGCAACTTANGGTATGAGCGGCACATCATGAAGACATAAACATTCTTAACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E412753" ref_strand="-" ref_description="SGN-E412753 [STM-16-D6]">
      <seq>gccagtgttgcatacaagcgtgcagtactaaatgcaattgattacctctcaaaatttggctactcaaaggaacaggtttatcttttactttcgtgctgtccctgcgaaggaaggatttcaggaattgttgatgctcccaatgctgttgccacacttgccattccaactgctatttttgaccaggatattcgcccaaaggtcaataaagtgccccttgggccaagacttatgaggaatccaggaattccgcaatgtacttatgatggaaacctgccaatcaccaagaatccttcgctccatcaacaagggagcagctgcgacatggatgctagttcttgagctggggatgtgcatgtacagctactgaaggaagataagaccaaattgaaagaagcaaacctgagatgcataaagcctaactaggcattctaagcatctaaagatgaagacaagttcttcaaaatgtaatagcttggtatcaacagtgagaccataaataatttttgaatcgtaacacggtaaacttcatactaggactaatcatcctaatgttgctgcctttcgtgaattttaagttaataaattgcttaatttcaataaaaaaaaagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="22625" stop="19775"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22325" g_stop="22251" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22250" i_stop="22145" i_length="106">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22144" g_stop="22037" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="183" r_length="108" r_score="0.954"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22036" i_stop="20505" i_length="1532">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.944" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20504" g_stop="20111" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="576" r_length="393" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="596" polyA_stop="607"/>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E412753" ref_strand="-">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E412753" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="22325" e_stop="22251"/>
          <exon e_start="22144" e_stop="22037"/>
          <exon e_start="20504" e_stop="20111"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAGTGTTGCATACAAGCGTGCAGTACTAAATGCAATTGATTACCTCTCAAAATTTGGCTACTCAAAGGAACAGGTATTAAAACTCTCCCCGAAAATCTTCTTGTAACAGAATACTCTCGGGAACAGATAACATTAACATTCAGGAATTGCTGATATAAACATTATGCTGGTGCTATCAGGTTTATCTTTTACTTTCGTGCTGTCCATGCGAAGGAAGGATTTCAGGAATTGTTGATGCCCCCAATGCTGTTGCCACCCTTGCCATCCCAACAGCTATTTTTGACCAGGTACTAGTACTTCTCAGGGTTCAATTAAAGATAATATAAGAGTTGCAACCTACAGGTCCAATAAATGTGATTCCAATATCTGAAATTTCTATATCTTCTGGGGCACTGAGCTATTATTAAGCATGGAGTAATCAATGGAAATATCATACTAAGTCAAGGCATCTTATAGGAACATCCTCTCTGATAGCAACTGCAAACTAATAATTCTATGCAATGACTGAAATCCAAGCTATTTTAGTAGGTAGAACTACAATCTATAGCATAATATCAGTAATCAGCACATGAATATATATGTAACTTTAGAGAAGCCAGCTATGACAAGATACATCATCACTAGGAAATTTTTACCAGCTTATTGACAACAGATGGGCTAGACGAGCAAATGGAAGAAGGAATTGGTGAAATTGTTCAGTTATCTGAAGTAGATCAATCAGTAAAATATCTTTCACCAGATTAAGCTAGAGGCAATAAATATCCGCAAGAACAATTCTAAGAAGCTCATGGAAGTCAGTAGGAAGCACACATGGAAGAAACCATAGACGAATGAGCTAACCAAAGTCAATGTTCCTCTACAATCTTATGTCCAATGTTCTTTAAAAGAAATATTCTGCATGTACGAACTCTGGAGATAACCAAGTTTATCTCATGTCCAATGTTCTTTTAAAAGAAATATTTTCCATATACGAACACTGGAGATAACCAAGTTTGGGACGCATCTCTAGGTCTGTTATATTGCTTTTCTCAGAAATACCTTGAGTTTGGATGTGTCTAAGCGCCGGTTAAGTTGCATCTCTAAGAACAACTAGCAAGCAATGAATTTGTTTTTTCCGGTTCCTAATCTGAAACAAAAATAAATAACAATAATACTAATAAGGATTGTGTATCGAAGGAGTCGCATCTTTTACTAAATACCTTTGGAGTTCACACAAGCAAAATAAATATCTTTTCTGATACAGTTTATAAGCCTATAGCTGAATTAGTAAGTCATGGTACACATTTCCTTCTGATTTCTGAATCTTCTTGTGCTGGGGACAAATAACTACGAAGATGAGATTTTGTTCAATGCTCATCACATAATTCTAAATACTAATGACTTAAAAGGCTTACAAGTTGCTTCAGTCTCTACATAATCTTTTCCTTCTAAACTTTTCCTCCAAATTTCTTTCTAAGATGGCTTTTTTCCCCCAGTGCTATGCTTATTTAAATACCTTATTGGATTATCGGACAAATAAGCTGCACACACAAATAGTTTTCTCATTTCTTATTCATGGAAGATAAAGTAAGCAGTCTAGTCCGACACGATCTTATATCCTCTTAGAATCAAAATCAATGTTTATCACATGATCAGGACTGAAATTCCTTGCAAGTGTCGAATGAAACCACATTATGTGGGTAATTAAAAATAATAGATACAGGTAACTGAAATTGATCTAGAACTATTTAAACCTGGTTCTAAGAAATCGGCCTCTATTGCTGGTTTTCATGAGCAGGAAGTTCTGTTTTATTCCAACAGAATCACTTGTTTGATGCAGGATATTCGCCCAAAGGTCAATAAAGTGCCCCTTGGGCCAAGGCTTATAAGGAATCCAGGAATTCCACAATGTACTTATGATGGAAACCTGCCAATCACCAAAAATCCTTTGCTCCATCAACAAGGGAGCAGCTGCAACATGGATGCTAGCTCTTGAGCATGGTATATGCATGTACAGCTACTGCTGGAATTGTATGACCAAGTTGAAAGAAGCAAAGGTGAGATGCATGAAGCCTAACTAGACCTTCTTAACATCTAAAGATGTAGACATGTTCTTGAAAATGTAATAGCTCGGTATCACCAGTGAGACCATAAATAATTTTTAAATCGGAACATGGTAAACTTCATACTTGGACTAATCATCCTAATGTTGCTGCCTCTCGTGAATTTTCAGA</genome_strand>
        <mrna_strand>GCCAGTGTTGCATACAAGCGTGCAGTACTAAATGCAATTGATTACCTCTCAAAATTTGGCTACTCAAAGGAACAG..........................................................................................................GTTTATCTTTTACTTTCGTGCTGTCCCTGCGAAGGAAGGATTTCAGGAATTGTTGATGCTCCCAATGCTGTTGCCACACTTGCCATTCCAACTGCTATTTTTGACCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTCGCCCAAAGGTCAATAAAGTGCCCCTTGGGCCAAGACTTATGAGGAATCCAGGAATTCCGCAATGTACTTATGATGGAAACCTGCCAATCACCAAGAATCCTTCGCTCCATCAACAAGGGAGCAGCTGCGACATGGATGCTAGTTCTTGAGCTGGGGATGTGCATGTACAGCTACTGAAGGAA-GATAAGACCAAATTGAAAGAAGCAAACCTGAGATGCATAAAGCCTAACTAGGCATTCTAAGCATCTAAAGATGAAGACAAGTTCTTCAAAATGTAATAGCTTGGTATCAACAGTGAGACCATAAATAATTTTTGAATCGTAACACGGTAAACTTCATACTAGGACTAATCATCCTAATGTTGCTGCCTTTCGTGAATTTTAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E289299" ref_strand="+" ref_description="SGN-E289299 [cLES-18-J11]">
      <seq>gaacaggtttatcttttactttcgtgctgtccatgcgaaggaaggatttcaggaattgttgatgcccccaatgctgttgccacccttgccatcccaacagctatttttgaccaggatattcgcccaaaggtcaataaagtgccccttgggccaaggcttataaggaatccaggaattccacaatgtacttatgatggaaacctgccaatcaccaaaaatcctttgctccatcaacaagggagcagctgcaacatggatgctagctcttgagcatggtatatgcatgtacagctactgctggaattgtatgaccaagttgaaagaagcaaaggtgagatgcatgaagcctaactagaccttcttaacatctaaagatgtagacatgttcttgaaaatgtaatagctcggtatcaccagtgagaccataaataatttttaaatcggaacatggtaaacttcatacttggactaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="22449" stop="19847"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22256" g_stop="22251" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22250" i_stop="22145" i_length="106">
            <donor d_prob="0.934" d_score="0.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22144" g_stop="22037" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="114" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22036" i_stop="20505" i_length="1532">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20504" g_stop="20138" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="481" r_length="367" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E289299" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22256" e_stop="22251"/>
          <exon e_start="22144" e_stop="22037"/>
          <exon e_start="20504" e_stop="20138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAGGTATTAAAACTCTCCCCGAAAATCTTCTTGTAACAGAATACTCTCGGGAACAGATAACATTAACATTCAGGAATTGCTGATATAAACATTATGCTGGTGCTATCAGGTTTATCTTTTACTTTCGTGCTGTCCATGCGAAGGAAGGATTTCAGGAATTGTTGATGCCCCCAATGCTGTTGCCACCCTTGCCATCCCAACAGCTATTTTTGACCAGGTACTAGTACTTCTCAGGGTTCAATTAAAGATAATATAAGAGTTGCAACCTACAGGTCCAATAAATGTGATTCCAATATCTGAAATTTCTATATCTTCTGGGGCACTGAGCTATTATTAAGCATGGAGTAATCAATGGAAATATCATACTAAGTCAAGGCATCTTATAGGAACATCCTCTCTGATAGCAACTGCAAACTAATAATTCTATGCAATGACTGAAATCCAAGCTATTTTAGTAGGTAGAACTACAATCTATAGCATAATATCAGTAATCAGCACATGAATATATATGTAACTTTAGAGAAGCCAGCTATGACAAGATACATCATCACTAGGAAATTTTTACCAGCTTATTGACAACAGATGGGCTAGACGAGCAAATGGAAGAAGGAATTGGTGAAATTGTTCAGTTATCTGAAGTAGATCAATCAGTAAAATATCTTTCACCAGATTAAGCTAGAGGCAATAAATATCCGCAAGAACAATTCTAAGAAGCTCATGGAAGTCAGTAGGAAGCACACATGGAAGAAACCATAGACGAATGAGCTAACCAAAGTCAATGTTCCTCTACAATCTTATGTCCAATGTTCTTTAAAAGAAATATTCTGCATGTACGAACTCTGGAGATAACCAAGTTTATCTCATGTCCAATGTTCTTTTAAAAGAAATATTTTCCATATACGAACACTGGAGATAACCAAGTTTGGGACGCATCTCTAGGTCTGTTATATTGCTTTTCTCAGAAATACCTTGAGTTTGGATGTGTCTAAGCGCCGGTTAAGTTGCATCTCTAAGAACAACTAGCAAGCAATGAATTTGTTTTTTCCGGTTCCTAATCTGAAACAAAAATAAATAACAATAATACTAATAAGGATTGTGTATCGAAGGAGTCGCATCTTTTACTAAATACCTTTGGAGTTCACACAAGCAAAATAAATATCTTTTCTGATACAGTTTATAAGCCTATAGCTGAATTAGTAAGTCATGGTACACATTTCCTTCTGATTTCTGAATCTTCTTGTGCTGGGGACAAATAACTACGAAGATGAGATTTTGTTCAATGCTCATCACATAATTCTAAATACTAATGACTTAAAAGGCTTACAAGTTGCTTCAGTCTCTACATAATCTTTTCCTTCTAAACTTTTCCTCCAAATTTCTTTCTAAGATGGCTTTTTTCCCCCAGTGCTATGCTTATTTAAATACCTTATTGGATTATCGGACAAATAAGCTGCACACACAAATAGTTTTCTCATTTCTTATTCATGGAAGATAAAGTAAGCAGTCTAGTCCGACACGATCTTATATCCTCTTAGAATCAAAATCAATGTTTATCACATGATCAGGACTGAAATTCCTTGCAAGTGTCGAATGAAACCACATTATGTGGGTAATTAAAAATAATAGATACAGGTAACTGAAATTGATCTAGAACTATTTAAACCTGGTTCTAAGAAATCGGCCTCTATTGCTGGTTTTCATGAGCAGGAAGTTCTGTTTTATTCCAACAGAATCACTTGTTTGATGCAGGATATTCGCCCAAAGGTCAATAAAGTGCCCCTTGGGCCAAGGCTTATAAGGAATCCAGGAATTCCACAATGTACTTATGATGGAAACCTGCCAATCACCAAAAATCCTTTGCTCCATCAACAAGGGAGCAGCTGCAACATGGATGCTAGCTCTTGAGCATGGTATATGCATGTACAGCTACTGCTGGAATTGTATGACCAAGTTGAAAGAAGCAAAGGTGAGATGCATGAAGCCTAACTAGACCTTCTTAACATCTAAAGATGTAGACATGTTCTTGAAAATGTAATAGCTCGGTATCACCAGTGAGACCATAAATAATTTTTAAATCGGAACATGGTAAACTTCATACTTGGACTAATCATCCTAA</genome_strand>
        <mrna_strand>GAACAG..........................................................................................................GTTTATCTTTTACTTTCGTGCTGTCCATGCGAAGGAAGGATTTCAGGAATTGTTGATGCCCCCAATGCTGTTGCCACCCTTGCCATCCCAACAGCTATTTTTGACCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTCGCCCAAAGGTCAATAAAGTGCCCCTTGGGCCAAGGCTTATAAGGAATCCAGGAATTCCACAATGTACTTATGATGGAAACCTGCCAATCACCAAAAATCCTTTGCTCCATCAACAAGGGAGCAGCTGCAACATGGATGCTAGCTCTTGAGCATGGTATATGCATGTACAGCTACTGCTGGAATTGTATGACCAAGTTGAAAGAAGCAAAGGTGAGATGCATGAAGCCTAACTAGACCTTCTTAACATCTAAAGATGTAGACATGTTCTTGAAAATGTAATAGCTCGGTATCACCAGTGAGACCATAAATAATTTTTAAATCGGAACATGGTAAACTTCATACTTGGACTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E373479" ref_strand="+" ref_description="SGN-E373479 [TUS-31-B10]">
      <seq>gaacaggtttatcttttactttcgtgctgtccatgcgaaggaaggatttcaggaattgttgatgcccccaatgctgttgccacccttgccatcccaacagctatttttgaccaggatattcgcccaaaggtcaataaagtgccccttgggccaaggcttataaggaatccaggaattccacaatgtacttatgatggaaacctgccaatcaccaaaaatcctttgctccatcaacaagggagcagctgcaacatggatgctagctcttgagcatggtatatgcatgtacagctactgctggaattgtatgaccaagttgaaagaagcaaaggtgagatgcatgaagcctaactagaccttcttaacatctaaagatgtagacatgttcttgaaaatgtaatagctcggtatcaccagtgagaccataaataatttttaaatcggaacatggtaaacttcatacttggactaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="22449" stop="19847"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22256" g_stop="22251" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22250" i_stop="22145" i_length="106">
            <donor d_prob="0.934" d_score="0.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22144" g_stop="22037" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="114" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22036" i_stop="20505" i_length="1532">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20504" g_stop="20138" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="481" r_length="367" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E373479" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373479" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22256" e_stop="22251"/>
          <exon e_start="22144" e_stop="22037"/>
          <exon e_start="20504" e_stop="20138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAGGTATTAAAACTCTCCCCGAAAATCTTCTTGTAACAGAATACTCTCGGGAACAGATAACATTAACATTCAGGAATTGCTGATATAAACATTATGCTGGTGCTATCAGGTTTATCTTTTACTTTCGTGCTGTCCATGCGAAGGAAGGATTTCAGGAATTGTTGATGCCCCCAATGCTGTTGCCACCCTTGCCATCCCAACAGCTATTTTTGACCAGGTACTAGTACTTCTCAGGGTTCAATTAAAGATAATATAAGAGTTGCAACCTACAGGTCCAATAAATGTGATTCCAATATCTGAAATTTCTATATCTTCTGGGGCACTGAGCTATTATTAAGCATGGAGTAATCAATGGAAATATCATACTAAGTCAAGGCATCTTATAGGAACATCCTCTCTGATAGCAACTGCAAACTAATAATTCTATGCAATGACTGAAATCCAAGCTATTTTAGTAGGTAGAACTACAATCTATAGCATAATATCAGTAATCAGCACATGAATATATATGTAACTTTAGAGAAGCCAGCTATGACAAGATACATCATCACTAGGAAATTTTTACCAGCTTATTGACAACAGATGGGCTAGACGAGCAAATGGAAGAAGGAATTGGTGAAATTGTTCAGTTATCTGAAGTAGATCAATCAGTAAAATATCTTTCACCAGATTAAGCTAGAGGCAATAAATATCCGCAAGAACAATTCTAAGAAGCTCATGGAAGTCAGTAGGAAGCACACATGGAAGAAACCATAGACGAATGAGCTAACCAAAGTCAATGTTCCTCTACAATCTTATGTCCAATGTTCTTTAAAAGAAATATTCTGCATGTACGAACTCTGGAGATAACCAAGTTTATCTCATGTCCAATGTTCTTTTAAAAGAAATATTTTCCATATACGAACACTGGAGATAACCAAGTTTGGGACGCATCTCTAGGTCTGTTATATTGCTTTTCTCAGAAATACCTTGAGTTTGGATGTGTCTAAGCGCCGGTTAAGTTGCATCTCTAAGAACAACTAGCAAGCAATGAATTTGTTTTTTCCGGTTCCTAATCTGAAACAAAAATAAATAACAATAATACTAATAAGGATTGTGTATCGAAGGAGTCGCATCTTTTACTAAATACCTTTGGAGTTCACACAAGCAAAATAAATATCTTTTCTGATACAGTTTATAAGCCTATAGCTGAATTAGTAAGTCATGGTACACATTTCCTTCTGATTTCTGAATCTTCTTGTGCTGGGGACAAATAACTACGAAGATGAGATTTTGTTCAATGCTCATCACATAATTCTAAATACTAATGACTTAAAAGGCTTACAAGTTGCTTCAGTCTCTACATAATCTTTTCCTTCTAAACTTTTCCTCCAAATTTCTTTCTAAGATGGCTTTTTTCCCCCAGTGCTATGCTTATTTAAATACCTTATTGGATTATCGGACAAATAAGCTGCACACACAAATAGTTTTCTCATTTCTTATTCATGGAAGATAAAGTAAGCAGTCTAGTCCGACACGATCTTATATCCTCTTAGAATCAAAATCAATGTTTATCACATGATCAGGACTGAAATTCCTTGCAAGTGTCGAATGAAACCACATTATGTGGGTAATTAAAAATAATAGATACAGGTAACTGAAATTGATCTAGAACTATTTAAACCTGGTTCTAAGAAATCGGCCTCTATTGCTGGTTTTCATGAGCAGGAAGTTCTGTTTTATTCCAACAGAATCACTTGTTTGATGCAGGATATTCGCCCAAAGGTCAATAAAGTGCCCCTTGGGCCAAGGCTTATAAGGAATCCAGGAATTCCACAATGTACTTATGATGGAAACCTGCCAATCACCAAAAATCCTTTGCTCCATCAACAAGGGAGCAGCTGCAACATGGATGCTAGCTCTTGAGCATGGTATATGCATGTACAGCTACTGCTGGAATTGTATGACCAAGTTGAAAGAAGCAAAGGTGAGATGCATGAAGCCTAACTAGACCTTCTTAACATCTAAAGATGTAGACATGTTCTTGAAAATGTAATAGCTCGGTATCACCAGTGAGACCATAAATAATTTTTAAATCGGAACATGGTAAACTTCATACTTGGACTAATCATCCTAA</genome_strand>
        <mrna_strand>GAACAG..........................................................................................................GTTTATCTTTTACTTTCGTGCTGTCCATGCGAAGGAAGGATTTCAGGAATTGTTGATGCCCCCAATGCTGTTGCCACCCTTGCCATCCCAACAGCTATTTTTGACCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTCGCCCAAAGGTCAATAAAGTGCCCCTTGGGCCAAGGCTTATAAGGAATCCAGGAATTCCACAATGTACTTATGATGGAAACCTGCCAATCACCAAAAATCCTTTGCTCCATCAACAAGGGAGCAGCTGCAACATGGATGCTAGCTCTTGAGCATGGTATATGCATGTACAGCTACTGCTGGAATTGTATGACCAAGTTGAAAGAAGCAAAGGTGAGATGCATGAAGCCTAACTAGACCTTCTTAACATCTAAAGATGTAGACATGTTCTTGAAAATGTAATAGCTCGGTATCACCAGTGAGACCATAAATAATTTTTAAATCGGAACATGGTAAACTTCATACTTGGACTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E373478" ref_strand="+" ref_description="SGN-E373478 [TUS-31-B10](-)">
      <seq>ggaacaggtttatcttttactttcgtgctgtccatgcgaaggaaggatttcaggaattgttgatgcccccaatgctgttgccacccttgccatcccaacagctatttttgaccaggatattcgcccaaaggtcaataaagtgccccttgggccaaggcttataaggaatccaggaattccacaatgtacttatgatggaaacctgccaatcaccaaaaatcctttgctccatcaacaagggagcagctgcaacatggatgctagctcttgagcatggtatatgcatgtacagctactgctggaattgtatgaccaagttgaaagaagcaaaggtgagatgcatgaagcctaactagaccttcttaacatctaaagatgtagacatgttcttgaaaatgtaatagctcggtatcaccagtgagaccataaataatttttaaatcggaacatggtaaacttcatacttggactaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="22449" stop="19847"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22257" g_stop="22251" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22250" i_stop="22145" i_length="106">
            <donor d_prob="0.934" d_score="0.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22144" g_stop="22037" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="115" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22036" i_stop="20505" i_length="1532">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20504" g_stop="20139" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="481" r_length="366" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E373478" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22257" e_stop="22251"/>
          <exon e_start="22144" e_stop="22037"/>
          <exon e_start="20504" e_stop="20139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACAGGTATTAAAACTCTCCCCGAAAATCTTCTTGTAACAGAATACTCTCGGGAACAGATAACATTAACATTCAGGAATTGCTGATATAAACATTATGCTGGTGCTATCAGGTTTATCTTTTACTTTCGTGCTGTCCATGCGAAGGAAGGATTTCAGGAATTGTTGATGCCCCCAATGCTGTTGCCACCCTTGCCATCCCAACAGCTATTTTTGACCAGGTACTAGTACTTCTCAGGGTTCAATTAAAGATAATATAAGAGTTGCAACCTACAGGTCCAATAAATGTGATTCCAATATCTGAAATTTCTATATCTTCTGGGGCACTGAGCTATTATTAAGCATGGAGTAATCAATGGAAATATCATACTAAGTCAAGGCATCTTATAGGAACATCCTCTCTGATAGCAACTGCAAACTAATAATTCTATGCAATGACTGAAATCCAAGCTATTTTAGTAGGTAGAACTACAATCTATAGCATAATATCAGTAATCAGCACATGAATATATATGTAACTTTAGAGAAGCCAGCTATGACAAGATACATCATCACTAGGAAATTTTTACCAGCTTATTGACAACAGATGGGCTAGACGAGCAAATGGAAGAAGGAATTGGTGAAATTGTTCAGTTATCTGAAGTAGATCAATCAGTAAAATATCTTTCACCAGATTAAGCTAGAGGCAATAAATATCCGCAAGAACAATTCTAAGAAGCTCATGGAAGTCAGTAGGAAGCACACATGGAAGAAACCATAGACGAATGAGCTAACCAAAGTCAATGTTCCTCTACAATCTTATGTCCAATGTTCTTTAAAAGAAATATTCTGCATGTACGAACTCTGGAGATAACCAAGTTTATCTCATGTCCAATGTTCTTTTAAAAGAAATATTTTCCATATACGAACACTGGAGATAACCAAGTTTGGGACGCATCTCTAGGTCTGTTATATTGCTTTTCTCAGAAATACCTTGAGTTTGGATGTGTCTAAGCGCCGGTTAAGTTGCATCTCTAAGAACAACTAGCAAGCAATGAATTTGTTTTTTCCGGTTCCTAATCTGAAACAAAAATAAATAACAATAATACTAATAAGGATTGTGTATCGAAGGAGTCGCATCTTTTACTAAATACCTTTGGAGTTCACACAAGCAAAATAAATATCTTTTCTGATACAGTTTATAAGCCTATAGCTGAATTAGTAAGTCATGGTACACATTTCCTTCTGATTTCTGAATCTTCTTGTGCTGGGGACAAATAACTACGAAGATGAGATTTTGTTCAATGCTCATCACATAATTCTAAATACTAATGACTTAAAAGGCTTACAAGTTGCTTCAGTCTCTACATAATCTTTTCCTTCTAAACTTTTCCTCCAAATTTCTTTCTAAGATGGCTTTTTTCCCCCAGTGCTATGCTTATTTAAATACCTTATTGGATTATCGGACAAATAAGCTGCACACACAAATAGTTTTCTCATTTCTTATTCATGGAAGATAAAGTAAGCAGTCTAGTCCGACACGATCTTATATCCTCTTAGAATCAAAATCAATGTTTATCACATGATCAGGACTGAAATTCCTTGCAAGTGTCGAATGAAACCACATTATGTGGGTAATTAAAAATAATAGATACAGGTAACTGAAATTGATCTAGAACTATTTAAACCTGGTTCTAAGAAATCGGCCTCTATTGCTGGTTTTCATGAGCAGGAAGTTCTGTTTTATTCCAACAGAATCACTTGTTTGATGCAGGATATTCGCCCAAAGGTCAATAAAGTGCCCCTTGGGCCAAGGCTTATAAGGAATCCAGGAATTCCACAATGTACTTATGATGGAAACCTGCCAATCACCAAAAATCCTTTGCTCCATCAACAAGGGAGCAGCTGCAACATGGATGCTAGCTCTTGAGCATGGTATATGCATGTACAGCTACTGCTGGAATTGTATGACCAAGTTGAAAGAAGCAAAGGTGAGATGCATGAAGCCTAACTAGACCTTCTTAACATCTAAAGATGTAGACATGTTCTTGAAAATGTAATAGCTCGGTATCACCAGTGAGACCATAAATAATTTTTAAATCGGAACATGGTAAACTTCATACTTGGACTAATCATCCTA</genome_strand>
        <mrna_strand>GGAACAG..........................................................................................................GTTTATCTTTTACTTTCGTGCTGTCCATGCGAAGGAAGGATTTCAGGAATTGTTGATGCCCCCAATGCTGTTGCCACCCTTGCCATCCCAACAGCTATTTTTGACCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTCGCCCAAAGGTCAATAAAGTGCCCCTTGGGCCAAGGCTTATAAGGAATCCAGGAATTCCACAATGTACTTATGATGGAAACCTGCCAATCACCAAAAATCCTTTGCTCCATCAACAAGGGAGCAGCTGCAACATGGATGCTAGCTCTTGAGCATGGTATATGCATGTACAGCTACTGCTGGAATTGTATGACCAAGTTGAAAGAAGCAAAGGTGAGATGCATGAAGCCTAACTAGACCTTCTTAACATCTAAAGATGTAGACATGTTCTTGAAAATGTAATAGCTCGGTATCACCAGTGAGACCATAAATAATTTTTAAATCGGAACATGGTAAACTTCATACTTGGACTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E421360" ref_strand="-" ref_description="SGN-E421360 [STM-32-B16]">
      <seq>aagtatcattttgtggggcaattgagatgagtggcttcctagagctcaagtgtgagattttaagaaacggaatgaaagaatatctcactccaatgggacccacacccactacatgtgaacccaatatttgagatagggcccatggagccaagattctcagagtggttagtgtttgagggcatcagtgtagatgaaagtggacaacaacactatcttgatgccagtgttgcatacaagcgtgcagtactaaatgcaattgattacctctcaaaatttggctactcaaaggaacaggtttatcttttactttcatgctgtccctgcgaaggaaggatttcaggaattgttgatgctcccaatgctgttgccacccttgccattccaactgctatttttgaccaggatattcgcccaaaggtcaataaagtgccccttgggccaagacttatgaggaatccaggaattccgcaatgtacttatgatggaaacctgccaatcaccaagaatcctttgctccatcaacaagggagcagctgcaacatggatgctagttcttgagcaggggatgtgcacgtacagctactgaaggaagatatgaccaagttgaaagaagcaaacctgagatgcataaagcctaactaggccttctaaacatctaaagatgaagacatgttcttcaaaatgtaatagtttggtatcaacagtgagaccataaataatttttgaatcataacacggtaaacttcattctaaaaaaaaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="23575" stop="19855"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23275" g_stop="23227" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23226" i_stop="22495" i_length="732">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22494" g_stop="22251" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="294" r_length="245" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22250" i_stop="22145" i_length="106">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22144" g_stop="22037" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="402" r_length="108" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22036" i_stop="20505" i_length="1532">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.944" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20504" g_stop="20169" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="737" r_length="335" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="752" polyA_stop="763"/>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E421360" ref_strand="-">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E421360" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="23275" e_stop="23227"/>
          <exon e_start="22494" e_stop="22251"/>
          <exon e_start="22144" e_stop="22037"/>
          <exon e_start="20504" e_stop="20169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTATCATTTTGTGGGGCAATTGAGATGAGTGGCTTCCTAGAGCTCAAGTACTTTCCACATCTCAATTTAGCGCTAAATTGTCATGACTAAATAATCTTTTGCTGCACTGGAATTGACTGTTATCAGTATCAATCCTTTGCATCAACAAGCACATTATAACTTCAAAACTGGGCTCCATTAATGACTGTGTTATTTACTATGCCACCCTCTTTCACATCACTGCTTATATGCTACATCTATATTCTTTATCTTAAGGTACTCAAAAATATACTATAAGAGTTGCAAAGGTATCCGTATTGGCATAGAGCAAGTGGTTCCCAGGATTAAGTGAAGAATTTCAATAGAACAGCCTTTTTCTTAAAAAGAAAAATATGTACCATGTTGGAAACACCCAAGTTGGGAAGTCACTTACGCTTAGCTCACCTAATTCTTTATCAATTAATCGCTGGAGCATAACTATGAAGAAGCCAAAAAATGTATAATGTAATTTGGATATGTATATTTTAAAAACAAACTAAAAACTACATACTCCTAAATCTTATTTATTTCTAACGTCCTATAACCTTTTTTATATGTGAACCTGAACTATGAAACACAACCTGAAAACAACACCAGCTATTAACTTTAATTTTCATTAGCAAGAACACAATAACAGACCTCCTTAAGCACCACTCGTTTTGCATCAAGTGCCTTTCTTTCTATGCGCTACACCTCAGCATTTATAAGCTAACAATAGATCTTTACTAGATTTAGATTTACGTTTTTTTTCTTGTAAACAGGTGTGAGATTATAAGAAACGGAATGAAAGAATATCTCACTCCAATGGGACCCACA-TCACTACATGTGAACCCAATTTTTGAGATAGGACCCATGGAGCCAAGATTCTCGGAGTGGTTGGTGTTTGAGGGCATCAGTGTAGATGAAAGTGGACAACAACACTATCTTGATGCCAGTGTTGCATACAAGCGTGCAGTACTAAATGCAATTGATTACCTCTCAAAATTTGGCTACTCAAAGGAACAGGTATTAAAACTCTCCCCGAAAATCTTCTTGTAACAGAATACTCTCGGGAACAGATAACATTAACATTCAGGAATTGCTGATATAAACATTATGCTGGTGCTATCAGGTTTATCTTTTACTTTCGTGCTGTCCATGCGAAGGAAGGATTTCAGGAATTGTTGATGCCCCCAATGCTGTTGCCACCCTTGCCATCCCAACAGCTATTTTTGACCAGGTACTAGTACTTCTCAGGGTTCAATTAAAGATAATATAAGAGTTGCAACCTACAGGTCCAATAAATGTGATTCCAATATCTGAAATTTCTATATCTTCTGGGGCACTGAGCTATTATTAAGCATGGAGTAATCAATGGAAATATCATACTAAGTCAAGGCATCTTATAGGAACATCCTCTCTGATAGCAACTGCAAACTAATAATTCTATGCAATGACTGAAATCCAAGCTATTTTAGTAGGTAGAACTACAATCTATAGCATAATATCAGTAATCAGCACATGAATATATATGTAACTTTAGAGAAGCCAGCTATGACAAGATACATCATCACTAGGAAATTTTTACCAGCTTATTGACAACAGATGGGCTAGACGAGCAAATGGAAGAAGGAATTGGTGAAATTGTTCAGTTATCTGAAGTAGATCAATCAGTAAAATATCTTTCACCAGATTAAGCTAGAGGCAATAAATATCCGCAAGAACAATTCTAAGAAGCTCATGGAAGTCAGTAGGAAGCACACATGGAAGAAACCATAGACGAATGAGCTAACCAAAGTCAATGTTCCTCTACAATCTTATGTCCAATGTTCTTTAAAAGAAATATTCTGCATGTACGAACTCTGGAGATAACCAAGTTTATCTCATGTCCAATGTTCTTTTAAAAGAAATATTTTCCATATACGAACACTGGAGATAACCAAGTTTGGGACGCATCTCTAGGTCTGTTATATTGCTTTTCTCAGAAATACCTTGAGTTTGGATGTGTCTAAGCGCCGGTTAAGTTGCATCTCTAAGAACAACTAGCAAGCAATGAATTTGTTTTTTCCGGTTCCTAATCTGAAACAAAAATAAATAACAATAATACTAATAAGGATTGTGTATCGAAGGAGTCGCATCTTTTACTAAATACCTTTGGAGTTCACACAAGCAAAATAAATATCTTTTCTGATACAGTTTATAAGCCTATAGCTGAATTAGTAAGTCATGGTACACATTTCCTTCTGATTTCTGAATCTTCTTGTGCTGGGGACAAATAACTACGAAGATGAGATTTTGTTCAATGCTCATCACATAATTCTAAATACTAATGACTTAAAAGGCTTACAAGTTGCTTCAGTCTCTACATAATCTTTTCCTTCTAAACTTTTCCTCCAAATTTCTTTCTAAGATGGCTTTTTTCCCCCAGTGCTATGCTTATTTAAATACCTTATTGGATTATCGGACAAATAAGCTGCACACACAAATAGTTTTCTCATTTCTTATTCATGGAAGATAAAGTAAGCAGTCTAGTCCGACACGATCTTATATCCTCTTAGAATCAAAATCAATGTTTATCACATGATCAGGACTGAAATTCCTTGCAAGTGTCGAATGAAACCACATTATGTGGGTAATTAAAAATAATAGATACAGGTAACTGAAATTGATCTAGAACTATTTAAACCTGGTTCTAAGAAATCGGCCTCTATTGCTGGTTTTCATGAGCAGGAAGTTCTGTTTTATTCCAACAGAATCACTTGTTTGATGCAGGATATTCGCCCAAAGGTCAATAAAGTGCCCCTTGGGCCAAGGCTTATAAGGAATCCAGGAATTCCACAATGTACTTATGATGGAAACCTGCCAATCACCAAAAATCCTTTGCTCCATCAACAAGGGAGCAGCTGCAACATGGATGCTAGCTCTTGAGCATGGTATATGCATGTACAGCTACTGCTGGAATTGTATGACCAAGTTGAAAGAAGCAAAGGTGAGATGCATGAAGCCTAACTAGACCTTCTTAACATCTAAAGATGTAGACATGTTCTTGAAAATGTAATAGCTCGGTATCACCAGTGAGACCATAAATAATTTTTAAATCGGAACATG</genome_strand>
        <mrna_strand>AAGTATCATTTTGTGGGGCAATTGAGATGAGTGGCTTCCTAGAGCTCAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGAGATTTTAAGAAACGGAATGAAAGAATATCTCACTCCAATGGGACCCACACCCACTACATGTGAACCCAATATTTGAGATAGGGCCCATGGAGCCAAGATTCTCAGAGTGGTTAGTGTTTGAGGGCATCAGTGTAGATGAAAGTGGACAACAACACTATCTTGATGCCAGTGTTGCATACAAGCGTGCAGTACTAAATGCAATTGATTACCTCTCAAAATTTGGCTACTCAAAGGAACAG..........................................................................................................GTTTATCTTTTACTTTCATGCTGTCCCTGCGAAGGAAGGATTTCAGGAATTGTTGATGCTCCCAATGCTGTTGCCACCCTTGCCATTCCAACTGCTATTTTTGACCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTCGCCCAAAGGTCAATAAAGTGCCCCTTGGGCCAAGACTTATGAGGAATCCAGGAATTCCGCAATGTACTTATGATGGAAACCTGCCAATCACCAAGAATCCTTTGCTCCATCAACAAGGGAGCAGCTGCAACATGGATGCTAGTTCTTGAGCAGGGGATGTGCACGTACAGCTACTGAAGGAA-GATATGACCAAGTTGAAAGAAGCAAACCTGAGATGCATAAAGCCTAACTAGGCCTTCTAAACATCTAAAGATGAAGACATGTTCTTCAAAATGTAATAGTTTGGTATCAACAGTGAGACCATAAATAATTTTTGAATCATAACACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E540647" ref_strand="+" ref_description="SGN-E540647 [TUS-61-A12]">
      <seq>ggaattggtgaaattgttcagttatctgaagtagatcaatcagtaaaatatctttcaccagattaagctagaggcaataaatatccgcaagaacaattctaagaagctcatggaagtcagtaggaagcacacatggaagaaaccatagacgaatgagctaaccaaagtcaatgttcctctacaatcttatgtccaatgttctttaaaagaaatattctgcatgtacgaactctggagataaccaagtttatctcatgtccaatgttcttttaaaagaaatattttccatatacaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="21945" stop="21048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21645" g_stop="21341" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="305" r_length="305" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E540647" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>305</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21645" e_stop="21341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATTGGTGAAATTGTTCAGTTATCTGAAGTAGATCAATCAGTAAAATATCTTTCACCAGATTAAGCTAGAGGCAATAAATATCCGCAAGAACAATTCTAAGAAGCTCATGGAAGTCAGTAGGAAGCACACATGGAAGAAACCATAGACGAATGAGCTAACCAAAGTCAATGTTCCTCTACAATCTTATGTCCAATGTTCTTTAAAAGAAATATTCTGCATGTACGAACTCTGGAGATAACCAAGTTTATCTCATGTCCAATGTTCTTTTAAAAGAAATATTTTCCATATACGAACACTGGAGA</genome_strand>
        <mrna_strand>GGAATTGGTGAAATTGTTCAGTTATCTGAAGTAGATCAATCAGTAAAATATCTTTCACCAGATTAAGCTAGAGGCAATAAATATCCGCAAGAACAATTCTAAGAAGCTCATGGAAGTCAGTAGGAAGCACACATGGAAGAAACCATAGACGAATGAGCTAACCAAAGTCAATGTTCCTCTACAATCTTATGTCCAATGTTCTTTAAAAGAAATATTCTGCATGTACGAACTCTGGAGATAACCAAGTTTATCTCATGTCCAATGTTCTTTTAAAAGAAATATTTTCCATATACAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E540982" ref_strand="+" ref_description="SGN-E540982 [TUS-61-I15]">
      <seq>ggaattggtgaaattgttcagttatctgaagtagatcaatcagtaaaatatctttcaccagattaagctagaggcaataaatatccgcaagaacaattctaagaagctcatggaagtcagtaggaagcacacatggaagaaaccatagacgaatgagctaaccaaagtcaatgttcctctacaatcttatgtccaatgttctttaaaagaaatattctgcatgtacgaactctggagataaccaagtttatctcatgtccaatgttcttttaaaagaaatattttccatatacaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="21945" stop="21048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21645" g_stop="21341" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="305" r_length="305" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E540982" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>305</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540982" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21645" e_stop="21341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATTGGTGAAATTGTTCAGTTATCTGAAGTAGATCAATCAGTAAAATATCTTTCACCAGATTAAGCTAGAGGCAATAAATATCCGCAAGAACAATTCTAAGAAGCTCATGGAAGTCAGTAGGAAGCACACATGGAAGAAACCATAGACGAATGAGCTAACCAAAGTCAATGTTCCTCTACAATCTTATGTCCAATGTTCTTTAAAAGAAATATTCTGCATGTACGAACTCTGGAGATAACCAAGTTTATCTCATGTCCAATGTTCTTTTAAAAGAAATATTTTCCATATACGAACACTGGAGA</genome_strand>
        <mrna_strand>GGAATTGGTGAAATTGTTCAGTTATCTGAAGTAGATCAATCAGTAAAATATCTTTCACCAGATTAAGCTAGAGGCAATAAATATCCGCAAGAACAATTCTAAGAAGCTCATGGAAGTCAGTAGGAAGCACACATGGAAGAAACCATAGACGAATGAGCTAACCAAAGTCAATGTTCCTCTACAATCTTATGTCCAATGTTCTTTAAAAGAAATATTCTGCATGTACGAACTCTGGAGATAACCAAGTTTATCTCATGTCCAATGTTCTTTTAAAAGAAATATTTTCCATATACAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E294323" ref_strand="+" ref_description="SGN-E294323 [cLET-14-J8]">
      <seq>gaattggtgaaattgttcagttatctgaagtagatcaatcagtaaaatatctttcaccagattaagctagaggcaataaatatccgcaagaacaattctaagaagctcatggaagtcagtaggaagcacacatggaagaaaccatagacgaatgagctaaccaaagtcaatgttcctctacaatcttatgtccaatgttctttaaaagaaatattctgcatgtacgaactctggagataaccaagtttatctcatgtccaatgttcttttaaaagaaatattttccatatacaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="21944" stop="21048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21644" g_stop="21341" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="304" r_length="304" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E294323" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>304</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21644" e_stop="21341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTGGTGAAATTGTTCAGTTATCTGAAGTAGATCAATCAGTAAAATATCTTTCACCAGATTAAGCTAGAGGCAATAAATATCCGCAAGAACAATTCTAAGAAGCTCATGGAAGTCAGTAGGAAGCACACATGGAAGAAACCATAGACGAATGAGCTAACCAAAGTCAATGTTCCTCTACAATCTTATGTCCAATGTTCTTTAAAAGAAATATTCTGCATGTACGAACTCTGGAGATAACCAAGTTTATCTCATGTCCAATGTTCTTTTAAAAGAAATATTTTCCATATACGAACACTGGAGA</genome_strand>
        <mrna_strand>GAATTGGTGAAATTGTTCAGTTATCTGAAGTAGATCAATCAGTAAAATATCTTTCACCAGATTAAGCTAGAGGCAATAAATATCCGCAAGAACAATTCTAAGAAGCTCATGGAAGTCAGTAGGAAGCACACATGGAAGAAACCATAGACGAATGAGCTAACCAAAGTCAATGTTCCTCTACAATCTTATGTCCAATGTTCTTTAAAAGAAATATTCTGCATGTACGAACTCTGGAGATAACCAAGTTTATCTCATGTCCAATGTTCTTTTAAAAGAAATATTTTCCATATACAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E294324" ref_strand="+" ref_description="SGN-E294324 [cLET-14-J8](-)">
      <seq>ttttttttttttgtatatggaaaatatttcttttaaaagaacattggacatgagataaacttggttatctccagagttcgtacatgcagaatatttcttttaaagaacattggacataagattgtagaggaacattgactttggttagctcattcgtctatggtttcttccatgtgtgcttcctactgacttccatgagcttcttagaattgttcttgcggatatttattgcctctagcttaatctggtgaaagatattttactgattgatctacttcagataactgaacaatttcaccaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="21048" stop="21944"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21341" g_stop="21644" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="304" r_length="304" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E294324" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>304</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294324" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21341" e_stop="21644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCAGTGTTCGTATATGGAAAATATTTCTTTTAAAAGAACATTGGACATGAGATAAACTTGGTTATCTCCAGAGTTCGTACATGCAGAATATTTCTTTTAAAGAACATTGGACATAAGATTGTAGAGGAACATTGACTTTGGTTAGCTCATTCGTCTATGGTTTCTTCCATGTGTGCTTCCTACTGACTTCCATGAGCTTCTTAGAATTGTTCTTGCGGATATTTATTGCCTCTAGCTTAATCTGGTGAAAGATATTTTACTGATTGATCTACTTCAGATAACTGAACAATTTCACCAATTC</genome_strand>
        <mrna_strand>TTTTTTTTTTTTGTATATGGAAAATATTTCTTTTAAAAGAACATTGGACATGAGATAAACTTGGTTATCTCCAGAGTTCGTACATGCAGAATATTTCTTTTAAAGAACATTGGACATAAGATTGTAGAGGAACATTGACTTTGGTTAGCTCATTCGTCTATGGTTTCTTCCATGTGTGCTTCCTACTGACTTCCATGAGCTTCTTAGAATTGTTCTTGCGGATATTTATTGCCTCTAGCTTAATCTGGTGAAAGATATTTTACTGATTGATCTACTTCAGATAACTGAACAATTTCACCAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E540645" ref_strand="+" ref_description="SGN-E540645 [TUS-61-A12](-)">
      <seq>ggaattggtgaaattgttcagttatctgaagtagatcaatcagtaaaatatctttcaccagattaagctagaggcaataaatatccgcaagaacaattctaagaagctcatggaagtcagtaggaagcacacatggaagaaaccatagacgaatgagctaaccaaagtcaatgttcctctacaatcttatgtccaatgttctttaaaagaaatattctgcatgtacgaactctggagataaccaagtttatctcatgtccaatgttcttttaaaagaaatattttccatatcaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="21945" stop="21048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21645" g_stop="21347" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="299" r_length="299" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E540645" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>299</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21645" e_stop="21347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATTGGTGAAATTGTTCAGTTATCTGAAGTAGATCAATCAGTAAAATATCTTTCACCAGATTAAGCTAGAGGCAATAAATATCCGCAAGAACAATTCTAAGAAGCTCATGGAAGTCAGTAGGAAGCACACATGGAAGAAACCATAGACGAATGAGCTAACCAAAGTCAATGTTCCTCTACAATCTTATGTCCAATGTTCTTTAAAAGAAATATTCTGCATGTACGAACTCTGGAGATAACCAAGTTTATCTCATGTCCAATGTTCTTTTAAAAGAAATATTTTCCATATACGAACAC</genome_strand>
        <mrna_strand>GGAATTGGTGAAATTGTTCAGTTATCTGAAGTAGATCAATCAGTAAAATATCTTTCACCAGATTAAGCTAGAGGCAATAAATATCCGCAAGAACAATTCTAAGAAGCTCATGGAAGTCAGTAGGAAGCACACATGGAAGAAACCATAGACGAATGAGCTAACCAAAGTCAATGTTCCTCTACAATCTTATGTCCAATGTTCTTTAAAAGAAATATTCTGCATGTACGAACTCTGGAGATAACCAAGTTTATCTCATGTCCAATGTTCTTTTAAAAGAAATATTTTCCATATCAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E557440" ref_strand="+" ref_description="SGN-E557440 [16239]">
      <seq>aagaaactggtccccagtctctcaaattatgtgaggtcttgcattctagaccattggctaacctaccttcaacaaaagggtgcattcttggcaagattcaagatggaactgctgagtggaatagaattgccgatgaggctgcaagaacaatacctggacgtgaaaatggaggaaactgtgacatcaaaaatctcagcagaggttcaaaaatataccttccagtatttgtagaaggagcaaacctcagtactggtgatatgcatttttctcaaggtgacggtgaagtatcattttgtggggcaattgagatgagtggcttcctagagctcaagtgtgcagattttaagaaacggaatgaaagaatatctcactccaatgggacccacaccactacatgtgaacccaatttttgagatagggcccatggaaccaaagattctcagagtggttggtgtctgagggcatcagtgtagatgaaagtggacaagaaacactatcttgatgccaggtgttgcatacaaggcgtgccagtact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="24131" stop="21997"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23831" g_stop="23737" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23736" i_stop="23463" i_length="274">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23462" g_stop="23227" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="331" r_length="236" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23226" i_stop="22495" i_length="732">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22494" g_stop="22297" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="535" r_length="204" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E557440" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E557440" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23831" e_stop="23737"/>
          <exon e_start="23462" e_stop="23227"/>
          <exon e_start="22494" e_stop="22297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAACAGGTCCCCGATCTCTCAAATTATGTGAGGTCTTGCATTCTAGACCATTGGCTAACCTACCTTCAACAAAAGGGTGCATTCTTGGCAAGGTATGATTGGTTTGCAATTGTTTCAGGAACTGACAACTTTGTCATTCCCTAAAAGTTACATGTTCTGTCAATCCAAACCAAATTCTGTAAAAAAACAAAAGACAAATTCCTTGTCAACAAAACTGCAGCCTAACTTTATTGTAAACAGTAAACAGAATATGATAAAGAGTCATAGTAATATGTTAAACAAACTGAATAGAGAAGAGAATGAACAAACAAACTTCACTGTCAAGCACATAAATTTTTTTTTTGACAACTCATGATTATAATGTAGATTCAAGATGGAACTCCTGAGTGGATTAGAATTGCCAACGAGGCTGCAAGAACAATACCTGGACGTGAAAATGGAGGAAACTGTGACATCAAAAATCTCAGCAGAGGTTCAAAAATATACCTTCCAGTATTTGTAGAAGGAGCAAACCTCAGTACTGGTGATATGCATTTTTCTCAAGGTGACGGTGAAGTATCATTTTGTGGGGCAATTGAGATGAGTGGCTTCCTAGAGCTCAAGTACTTTCCACATCTCAATTTAGCGCTAAATTGTCATGACTAAATAATCTTTTGCTGCACTGGAATTGACTGTTATCAGTATCAATCCTTTGCATCAACAAGCACATTATAACTTCAAAACTGGGCTCCATTAATGACTGTGTTATTTACTATGCCACCCTCTTTCACATCACTGCTTATATGCTACATCTATATTCTTTATCTTAAGGTACTCAAAAATATACTATAAGAGTTGCAAAGGTATCCGTATTGGCATAGAGCAAGTGGTTCCCAGGATTAAGTGAAGAATTTCAATAGAACAGCCTTTTTCTTAAAAAGAAAAATATGTACCATGTTGGAAACACCCAAGTTGGGAAGTCACTTACGCTTAGCTCACCTAATTCTTTATCAATTAATCGCTGGAGCATAACTATGAAGAAGCCAAAAAATGTATAATGTAATTTGGATATGTATATTTTAAAAACAAACTAAAAACTACATACTCCTAAATCTTATTTATTTCTAACGTCCTATAACCTTTTTTATATGTGAACCTGAACTATGAAACACAACCTGAAAACAACACCAGCTATTAACTTTAATTTTCATTAGCAAGAACACAATAACAGACCTCCTTAAGCACCACTCGTTTTGCATCAAGTGCCTTTCTTTCTATGCGCTACACCTCAGCATTTATAAGCTAACAATAGATCTTTACTAGATTTAGATTTACGTTTTTTTTCTTGTAAACAGGTGTG-AGATTATAAGAAACGGAATGAAAGAATATCTCACTCCAATGGGACCCACATCACTACATGTGAACCCAATTTTTGAGATAGGACCCATGGAGCC-AAGATTCTCGGAGTGGTTGGTGTTTGAGGGCATCAGTGTAGATGAAAGTGGACAA-CAACACTATCTTGATGCCA-GTGTTGCATACAA-GCGTG-CAGTACT</genome_strand>
        <mrna_strand>AAGAAACTGGTCCCCAGTCTCTCAAATTATGTGAGGTCTTGCATTCTAGACCATTGGCTAACCTACCTTCAACAAAAGGGTGCATTCTTGGCAAG..................................................................................................................................................................................................................................................................................ATTCAAGATGGAACTGCTGAGTGGAATAGAATTGCCGATGAGGCTGCAAGAACAATACCTGGACGTGAAAATGGAGGAAACTGTGACATCAAAAATCTCAGCAGAGGTTCAAAAATATACCTTCCAGTATTTGTAGAAGGAGCAAACCTCAGTACTGGTGATATGCATTTTTCTCAAGGTGACGGTGAAGTATCATTTTGTGGGGCAATTGAGATGAGTGGCTTCCTAGAGCTCAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGCAGATTTTAAGAAACGGAATGAAAGAATATCTCACTCCAATGGGACCCACACCACTACATGTGAACCCAATTTTTGAGATAGGGCCCATGGAACCAAAGATTCTCAGAGTGGTTGGTGTCTGAGGGCATCAGTGTAGATGAAAGTGGACAAGAAACACTATCTTGATGCCAGGTGTTGCATACAAGGCGTGCCAGTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E558652" ref_strand="+" ref_description="SGN-E558652 [18026]">
      <seq>gtggaatagaattgccgatgaggctgcaagaacaatacctggacgtgaaaatggaggaaactgtgacatcaaaaatctcagcagaggttcaaaaatataccttccagtatttgtagcaaggagcaaacctcagtactggtgatatgcatttttctcaaggtgacggtgaagtatcattttgtggggcaattgagatgagtggcttcctagagctcaagtgtgagattttaagaaacggaatgaaagaatatctcactccaatgggacccacaccactacatgtgaacccaatttttgagatagggcccatggaaccaagattctcagagtggttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="23742" stop="22077"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23442" g_stop="23227" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23226" i_stop="22495" i_length="732">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22494" g_stop="22377" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="335" r_length="118" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E558652" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>334</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E558652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23442" e_stop="23227"/>
          <exon e_start="22494" e_stop="22377"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGATTAGAATTGCCAACGAGGCTGCAAGAACAATACCTGGACGTGAAAATGGAGGAAACTGTGACATCAAAAATCTCAGCAGAGGTTCAAAAATATACCTTCCAGTATTTGTAG-AAGGAGCAAACCTCAGTACTGGTGATATGCATTTTTCTCAAGGTGACGGTGAAGTATCATTTTGTGGGGCAATTGAGATGAGTGGCTTCCTAGAGCTCAAGTACTTTCCACATCTCAATTTAGCGCTAAATTGTCATGACTAAATAATCTTTTGCTGCACTGGAATTGACTGTTATCAGTATCAATCCTTTGCATCAACAAGCACATTATAACTTCAAAACTGGGCTCCATTAATGACTGTGTTATTTACTATGCCACCCTCTTTCACATCACTGCTTATATGCTACATCTATATTCTTTATCTTAAGGTACTCAAAAATATACTATAAGAGTTGCAAAGGTATCCGTATTGGCATAGAGCAAGTGGTTCCCAGGATTAAGTGAAGAATTTCAATAGAACAGCCTTTTTCTTAAAAAGAAAAATATGTACCATGTTGGAAACACCCAAGTTGGGAAGTCACTTACGCTTAGCTCACCTAATTCTTTATCAATTAATCGCTGGAGCATAACTATGAAGAAGCCAAAAAATGTATAATGTAATTTGGATATGTATATTTTAAAAACAAACTAAAAACTACATACTCCTAAATCTTATTTATTTCTAACGTCCTATAACCTTTTTTATATGTGAACCTGAACTATGAAACACAACCTGAAAACAACACCAGCTATTAACTTTAATTTTCATTAGCAAGAACACAATAACAGACCTCCTTAAGCACCACTCGTTTTGCATCAAGTGCCTTTCTTTCTATGCGCTACACCTCAGCATTTATAAGCTAACAATAGATCTTTACTAGATTTAGATTTACGTTTTTTTTCTTGTAAACAGGTGTGAGATTATAAGAAACGGAATGAAAGAATATCTCACTCCAATGGGACCCACATCACTACATGTGAACCCAATTTTTGAGATAGGACCCATGGAGCCAAGATTCTCGGAGTGGTTG</genome_strand>
        <mrna_strand>GTGGAATAGAATTGCCGATGAGGCTGCAAGAACAATACCTGGACGTGAAAATGGAGGAAACTGTGACATCAAAAATCTCAGCAGAGGTTCAAAAATATACCTTCCAGTATTTGTAGCAAGGAGCAAACCTCAGTACTGGTGATATGCATTTTTCTCAAGGTGACGGTGAAGTATCATTTTGTGGGGCAATTGAGATGAGTGGCTTCCTAGAGCTCAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGAGATTTTAAGAAACGGAATGAAAGAATATCTCACTCCAATGGGACCCACACCACTACATGTGAACCCAATTTTTGAGATAGGGCCCATGGAACCAAGATTCTCAGAGTGGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E737081" ref_strand="+" ref_description="SGN-E737081 [LC08BF11]">
      <seq>cattactagtaatccccatagacctaaagaaaaagccatggcaacaaaagttgccactccacaaccgttggcacccagagatacctcctgtaacagagattaaaacaggggagatgttccgaattgagatggttgattggacagcaggctctatccaagataataactctgcaattgatgtaaaaaccgttgatctatccactgtgcattatctcagtgggccaatacgagtcgttgacacagatggaaatcctgctgaaccaggtgatctccttgctgttgaaatatgcaacttagggcctctccctggagatgaatggggttttacagcaatattcgacagagagaacggtggaggatttctaacagaccattttccccgtgcaactaaagctatttggtatttcgaaggcatatatgcctactcacctcatataccaggtgtaagatttcctggtttaattcatcctggaataattggaacagcgccttcaaaagaactactcaatatatggaatgagagggaaagaaagctcgaagaaacaggtccccgatctctcaaattatgtgaggtcttgcattctagaccattggctaacctaccttcaacaaaagggtgcattcttggcaagattcaagatggaactcctgagtggattagaattgccaacgaggctgcaagaacaatacctggacgtgaaaatggaggaaactgtgacatcaaaaatctcagcagaggttcaaaaatataccttccagtatttgtagaaggagcaaacctcagtactggtgatatgcatttttctcaaggtgacggtgaagtatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="24870" stop="22969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24570" g_stop="24368" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24367" i_stop="24253" i_length="115">
            <donor d_prob="0.852" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24252" g_stop="24015" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="441" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24014" i_stop="23928" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23927" g_stop="23737" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="632" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23736" i_stop="23463" i_length="274">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23462" g_stop="23269" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="826" r_length="194" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E737081" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>826</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737081" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24570" e_stop="24368"/>
          <exon e_start="24252" e_stop="24015"/>
          <exon e_start="23927" e_stop="23737"/>
          <exon e_start="23462" e_stop="23269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGACTAGTAATCCCCATAGACCTAAAGAAAAAGCCATGGCAACAAAAGTTGCCACTCCACAACCGTTGGCACCCAGAGATACCTCCTGTAACAGAGATTAAAACAGGGGAGATGTTCCGAATTGAGATGGTTGATTGGACAGCAGGCTCTATCCAAGATAATAACTCTGCAATTGATGTAAAAACCGTTGATCTATCCACTGTAAGTGTGCATAATCTAACATACCCGGTGCATCTAACCAAGAAAGAGTACTAGATCCTAAGTCATATGATGTTGGATATCACTTCAGGCTGAATCATATAACTCTCCTATGCAGGTGCATTATCTCAGTGGGCCAATACGAGTCGTTGACACAGATGGAAATCCTGCTGAACCAGGTGATCTCCTTGCTGTTGAAATATGCAACTTAGGGCCTCTCCCTGGAGATGAATGGGGTTTTACAGCAATATTCGACAGAGAGAACGGTGGAGGATTTCTAACAGACCATTTTCCCCGTGCAACTAAAGCTATTTGGTATTTCGAAGGCATATATGCCTACTCACCTCATATACCAGGTAAGGCTGCATATCTTCTCCTAATATATCCTAGACAAATATACGTATCTAATCCTAATAAGATCTACTGAAAAATCTCACAAACAGGTGTAAGATTTCCTGGTTTAATTCATCCTGGAATAATTGGAACAGCGCCTTCAAAAGAACTACTCAATATATGGAATGAGAGGGAAAGAAAGCTCGAAGAAACAGGTCCCCGATCTCTCAAATTATGTGAGGTCTTGCATTCTAGACCATTGGCTAACCTACCTTCAACAAAAGGGTGCATTCTTGGCAAGGTATGATTGGTTTGCAATTGTTTCAGGAACTGACAACTTTGTCATTCCCTAAAAGTTACATGTTCTGTCAATCCAAACCAAATTCTGTAAAAAAACAAAAGACAAATTCCTTGTCAACAAAACTGCAGCCTAACTTTATTGTAAACAGTAAACAGAATATGATAAAGAGTCATAGTAATATGTTAAACAAACTGAATAGAGAAGAGAATGAACAAACAAACTTCACTGTCAAGCACATAAATTTTTTTTTTGACAACTCATGATTATAATGTAGATTCAAGATGGAACTCCTGAGTGGATTAGAATTGCCAACGAGGCTGCAAGAACAATACCTGGACGTGAAAATGGAGGAAACTGTGACATCAAAAATCTCAGCAGAGGTTCAAAAATATACCTTCCAGTATTTGTAGAAGGAGCAAACCTCAGTACTGGTGATATGCATTTTTCTCAAGGTGACGGTGAAGTATC</genome_strand>
        <mrna_strand>CATTACTAGTAATCCCCATAGACCTAAAGAAAAAGCCATGGCAACAAAAGTTGCCACTCCACAACCGTTGGCACCCAGAGATACCTCCTGTAACAGAGATTAAAACAGGGGAGATGTTCCGAATTGAGATGGTTGATTGGACAGCAGGCTCTATCCAAGATAATAACTCTGCAATTGATGTAAAAACCGTTGATCTATCCACT...................................................................................................................GTGCATTATCTCAGTGGGCCAATACGAGTCGTTGACACAGATGGAAATCCTGCTGAACCAGGTGATCTCCTTGCTGTTGAAATATGCAACTTAGGGCCTCTCCCTGGAGATGAATGGGGTTTTACAGCAATATTCGACAGAGAGAACGGTGGAGGATTTCTAACAGACCATTTTCCCCGTGCAACTAAAGCTATTTGGTATTTCGAAGGCATATATGCCTACTCACCTCATATACCAG.......................................................................................GTGTAAGATTTCCTGGTTTAATTCATCCTGGAATAATTGGAACAGCGCCTTCAAAAGAACTACTCAATATATGGAATGAGAGGGAAAGAAAGCTCGAAGAAACAGGTCCCCGATCTCTCAAATTATGTGAGGTCTTGCATTCTAGACCATTGGCTAACCTACCTTCAACAAAAGGGTGCATTCTTGGCAAG..................................................................................................................................................................................................................................................................................ATTCAAGATGGAACTCCTGAGTGGATTAGAATTGCCAACGAGGCTGCAAGAACAATACCTGGACGTGAAAATGGAGGAAACTGTGACATCAAAAATCTCAGCAGAGGTTCAAAAATATACCTTCCAGTATTTGTAGAAGGAGCAAACCTCAGTACTGGTGATATGCATTTTTCTCAAGGTGACGGTGAAGTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E412752" ref_strand="+" ref_description="SGN-E412752 [STM-16-D6]">
      <seq>ggccaataagagtagtactgcacagatggaaatcctgctgaaccaggtgacctccttgctgttgaaatatgcaacttagggcctctccctggagatgaatggggttttacagcaatattcgacagagagaacggtggaggatttctaacagaccattttccccgtgcaactaaagctatttggtatttcgaaggcatatatgcctactcacctcatataccaggtgtaagatttcctggtttagttcatcctggaataattggaacagcgccttcaaaagaactactcaatatatggaatgagagggaaagaaagctcgaagaaactggtccccagtctctcaaattatgtgaggtcttgcattctagaccattggctaacctaccttcaacaaaagggtgcattcttggcaagattcaagatggaactgctgagtggaatagaattgccgatgaggctgcaagaacaatacctggacgtgaaaatggaggaaactgtgacatcaaaaatctcagcagaggttcaaaaatataccttccagtatttgtagaaagagcaaacctcagtactggtgatatgcatttttctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="24520" stop="22987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24236" g_stop="24015" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24014" i_stop="23928" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23927" g_stop="23737" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="414" r_length="191" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23736" i_stop="23463" i_length="274">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23462" g_stop="23287" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="590" r_length="176" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E412752" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E412752" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24236" e_stop="24015"/>
          <exon e_start="23927" e_stop="23737"/>
          <exon e_start="23462" e_stop="23287"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCCAATACGAGTCGT-TGACACAGATGGAAATCCTGCTGAACCAGGTGATCTCCTTGCTGTTGAAATATGCAACTTAGGGCCTCTCCCTGGAGATGAATGGGGTTTTACAGCAATATTCGACAGAGAGAACGGTGGAGGATTTCTAACAGACCATTTTCCCCGTGCAACTAAAGCTATTTGGTATTTCGAAGGCATATATGCCTACTCACCTCATATACCAGGTAAGGCTGCATATCTTCTCCTAATATATCCTAGACAAATATACGTATCTAATCCTAATAAGATCTACTGAAAAATCTCACAAACAGGTGTAAGATTTCCTGGTTTAATTCATCCTGGAATAATTGGAACAGCGCCTTCAAAAGAACTACTCAATATATGGAATGAGAGGGAAAGAAAGCTCGAAGAAACAGGTCCCCGATCTCTCAAATTATGTGAGGTCTTGCATTCTAGACCATTGGCTAACCTACCTTCAACAAAAGGGTGCATTCTTGGCAAGGTATGATTGGTTTGCAATTGTTTCAGGAACTGACAACTTTGTCATTCCCTAAAAGTTACATGTTCTGTCAATCCAAACCAAATTCTGTAAAAAAACAAAAGACAAATTCCTTGTCAACAAAACTGCAGCCTAACTTTATTGTAAACAGTAAACAGAATATGATAAAGAGTCATAGTAATATGTTAAACAAACTGAATAGAGAAGAGAATGAACAAACAAACTTCACTGTCAAGCACATAAATTTTTTTTTTGACAACTCATGATTATAATGTAGATTCAAGATGGAACTCCTGAGTGGATTAGAATTGCCAACGAGGCTGCAAGAACAATACCTGGACGTGAAAATGGAGGAAACTGTGACATCAAAAATCTCAGCAGAGGTTCAAAAATATACCTTCCAGTATTTGTAGAAGGAGCAAACCTCAGTACTGGTGATATGCATTTTTCTCA</genome_strand>
        <mrna_strand>GGCCAATAAGAGTAGTACTGCACAGATGGAAATCCTGCTGAACCAGGTGACCTCCTTGCTGTTGAAATATGCAACTTAGGGCCTCTCCCTGGAGATGAATGGGGTTTTACAGCAATATTCGACAGAGAGAACGGTGGAGGATTTCTAACAGACCATTTTCCCCGTGCAACTAAAGCTATTTGGTATTTCGAAGGCATATATGCCTACTCACCTCATATACCAG.......................................................................................GTGTAAGATTTCCTGGTTTAGTTCATCCTGGAATAATTGGAACAGCGCCTTCAAAAGAACTACTCAATATATGGAATGAGAGGGAAAGAAAGCTCGAAGAAACTGGTCCCCAGTCTCTCAAATTATGTGAGGTCTTGCATTCTAGACCATTGGCTAACCTACCTTCAACAAAAGGGTGCATTCTTGGCAAG..................................................................................................................................................................................................................................................................................ATTCAAGATGGAACTGCTGAGTGGAATAGAATTGCCGATGAGGCTGCAAGAACAATACCTGGACGTGAAAATGGAGGAAACTGTGACATCAAAAATCTCAGCAGAGGTTCAAAAATATACCTTCCAGTATTTGTAGAAAGAGCAAACCTCAGTACTGGTGATATGCATTTTTCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E334294" ref_strand="+" ref_description="SGN-E334294 [cTOD-21-C8]">
      <seq>catggctcctccaactccaagactagtaatccccatagacctaaagaaaaagccatggcaacaaaagttgccactccacaaccgttggcacccagagatacctcctgtaacagagattaaaacaggggagatgttccgaattgagatggttgattggacagcaggctctatccaagataataactctgcaattgatgtaaaaaccgttgatctatccactgtgcattatctcagtgggccaatacgagtcgttgacacagatggaaatcctgctgaaccaggtgatctccttgctgttgaaatatgcaacttagggcctctccctggagatgaatggggttttacagcaatattcgacagagagaacggtggaggatttctaacagaccattttccccgtgcaactaaagctatttggtatttcgaaggcatatatgcctactcacctcatataccaggtgtaagatttcctggtttaattcatcctggaataattggaacagcgccttcaaaagaactactcaatatatggaatgagagggaaagaaagctcgaagaaacaggtccccgatctctcaaattatgtgaggtcttgcattctagaccattggctaacctaccttccacaaaagggtgcattcttggcaagattcaagatggaactcctgagtggattagaattgcccacgaggctgcaagaaaatacctggacgtgaaaatggaggaaactgtgacatcaaaatctcagcagaggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="24887" stop="23054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24587" g_stop="24368" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24367" i_stop="24253" i_length="115">
            <donor d_prob="0.852" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24252" g_stop="24015" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="458" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24014" i_stop="23928" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23927" g_stop="23737" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="649" r_length="191" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23736" i_stop="23463" i_length="274">
            <donor d_prob="0.962" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23462" g_stop="23354" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="650" r_stop="756" r_length="107" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E334294" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24587" e_stop="24368"/>
          <exon e_start="24252" e_stop="24015"/>
          <exon e_start="23927" e_stop="23737"/>
          <exon e_start="23462" e_stop="23354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGCTCCTCCAACTCCAAGACTAGTAATCCCCATAGACCTAAAGAAAAAGCCATGGCAACAAAAGTTGCCACTCCACAACCGTTGGCACCCAGAGATACCTCCTGTAACAGAGATTAAAACAGGGGAGATGTTCCGAATTGAGATGGTTGATTGGACAGCAGGCTCTATCCAAGATAATAACTCTGCAATTGATGTAAAAACCGTTGATCTATCCACTGTAAGTGTGCATAATCTAACATACCCGGTGCATCTAACCAAGAAAGAGTACTAGATCCTAAGTCATATGATGTTGGATATCACTTCAGGCTGAATCATATAACTCTCCTATGCAGGTGCATTATCTCAGTGGGCCAATACGAGTCGTTGACACAGATGGAAATCCTGCTGAACCAGGTGATCTCCTTGCTGTTGAAATATGCAACTTAGGGCCTCTCCCTGGAGATGAATGGGGTTTTACAGCAATATTCGACAGAGAGAACGGTGGAGGATTTCTAACAGACCATTTTCCCCGTGCAACTAAAGCTATTTGGTATTTCGAAGGCATATATGCCTACTCACCTCATATACCAGGTAAGGCTGCATATCTTCTCCTAATATATCCTAGACAAATATACGTATCTAATCCTAATAAGATCTACTGAAAAATCTCACAAACAGGTGTAAGATTTCCTGGTTTAATTCATCCTGGAATAATTGGAACAGCGCCTTCAAAAGAACTACTCAATATATGGAATGAGAGGGAAAGAAAGCTCGAAGAAACAGGTCCCCGATCTCTCAAATTATGTGAGGTCTTGCATTCTAGACCATTGGCTAACCTACCTTCAACAAAAGGGTGCATTCTTGGCAAGGTATGATTGGTTTGCAATTGTTTCAGGAACTGACAACTTTGTCATTCCCTAAAAGTTACATGTTCTGTCAATCCAAACCAAATTCTGTAAAAAAACAAAAGACAAATTCCTTGTCAACAAAACTGCAGCCTAACTTTATTGTAAACAGTAAACAGAATATGATAAAGAGTCATAGTAATATGTTAAACAAACTGAATAGAGAAGAGAATGAACAAACAAACTTCACTGTCAAGCACATAAATTTTTTTTTTGACAACTCATGATTATAATGTAGATTCAAGATGGAACTCCTGAGTGGATTAGAATTGCCAACGAGGCTGCAAGAACAATACCTGGACGTGAAAATGGAGGAAACTGTGACATCAAAAATCTCAGCAGAGGTT</genome_strand>
        <mrna_strand>CATGGCTCCTCCAACTCCAAGACTAGTAATCCCCATAGACCTAAAGAAAAAGCCATGGCAACAAAAGTTGCCACTCCACAACCGTTGGCACCCAGAGATACCTCCTGTAACAGAGATTAAAACAGGGGAGATGTTCCGAATTGAGATGGTTGATTGGACAGCAGGCTCTATCCAAGATAATAACTCTGCAATTGATGTAAAAACCGTTGATCTATCCACT...................................................................................................................GTGCATTATCTCAGTGGGCCAATACGAGTCGTTGACACAGATGGAAATCCTGCTGAACCAGGTGATCTCCTTGCTGTTGAAATATGCAACTTAGGGCCTCTCCCTGGAGATGAATGGGGTTTTACAGCAATATTCGACAGAGAGAACGGTGGAGGATTTCTAACAGACCATTTTCCCCGTGCAACTAAAGCTATTTGGTATTTCGAAGGCATATATGCCTACTCACCTCATATACCAG.......................................................................................GTGTAAGATTTCCTGGTTTAATTCATCCTGGAATAATTGGAACAGCGCCTTCAAAAGAACTACTCAATATATGGAATGAGAGGGAAAGAAAGCTCGAAGAAACAGGTCCCCGATCTCTCAAATTATGTGAGGTCTTGCATTCTAGACCATTGGCTAACCTACCTTCCACAAAAGGGTGCATTCTTGGCAAG..................................................................................................................................................................................................................................................................................ATTCAAGATGGAACTCCTGAGTGGATTAGAATTGCCCACGAGGCTGCAAGAA-AATACCTGGACGTGAAAATGGAGGAAACTGTGACATC-AAAATCTCAGCAGAGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E334406" ref_strand="+" ref_description="SGN-E334406 [cTOD-21-L18]">
      <seq>catggctcctccaactccaagactagtaatccccatagacctaaagaaaaagccatggcaacaaaagttgccactccacaaccgttggcacccagagatacctcctgtaacagagattaaaacaggggagatgttccgaattgagatggttgattggacagcaggctctatccaagataataactctgcaattgatgtaaaaaccgttgatctatccactgtgcattatctcagtgggccaatacgagtcgttgacacagatggaaatcctgctgaaccaggtgatctccttgctgttgaaatatgcaacttagggcctctccctggagatgaatggggttttacagcaatattcgacagagagaacggtggaggatttctaacagaccattttccccgtgcaactaaagctatttggtatttcgaaggcatatatgcctactcacctcatataccaggtgtaagatttcctggtttaattcatcctggaataattggaacagcgccttcaaaagaactactcaatatatggaatgagagggaaagaaagctcgaagaaacaggtccccgatctctcaaattatgtgaggtcttgcattctagaccattggctaacctacctccaacaaaagggtgcattcttggcaagatttcagatggaactcctgagtggattagaattngccacgaggctgcaagacaatacctggacgtgaaaatggaggaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="24887" stop="23081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24587" g_stop="24368" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24367" i_stop="24253" i_length="115">
            <donor d_prob="0.852" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24252" g_stop="24015" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="458" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24014" i_stop="23928" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23927" g_stop="23737" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="649" r_length="191" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23736" i_stop="23463" i_length="274">
            <donor d_prob="0.962" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23462" g_stop="23381" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="650" r_stop="730" r_length="81" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E334406" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24587" e_stop="24368"/>
          <exon e_start="24252" e_stop="24015"/>
          <exon e_start="23927" e_stop="23737"/>
          <exon e_start="23462" e_stop="23381"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGCTCCTCCAACTCCAAGACTAGTAATCCCCATAGACCTAAAGAAAAAGCCATGGCAACAAAAGTTGCCACTCCACAACCGTTGGCACCCAGAGATACCTCCTGTAACAGAGATTAAAACAGGGGAGATGTTCCGAATTGAGATGGTTGATTGGACAGCAGGCTCTATCCAAGATAATAACTCTGCAATTGATGTAAAAACCGTTGATCTATCCACTGTAAGTGTGCATAATCTAACATACCCGGTGCATCTAACCAAGAAAGAGTACTAGATCCTAAGTCATATGATGTTGGATATCACTTCAGGCTGAATCATATAACTCTCCTATGCAGGTGCATTATCTCAGTGGGCCAATACGAGTCGTTGACACAGATGGAAATCCTGCTGAACCAGGTGATCTCCTTGCTGTTGAAATATGCAACTTAGGGCCTCTCCCTGGAGATGAATGGGGTTTTACAGCAATATTCGACAGAGAGAACGGTGGAGGATTTCTAACAGACCATTTTCCCCGTGCAACTAAAGCTATTTGGTATTTCGAAGGCATATATGCCTACTCACCTCATATACCAGGTAAGGCTGCATATCTTCTCCTAATATATCCTAGACAAATATACGTATCTAATCCTAATAAGATCTACTGAAAAATCTCACAAACAGGTGTAAGATTTCCTGGTTTAATTCATCCTGGAATAATTGGAACAGCGCCTTCAAAAGAACTACTCAATATATGGAATGAGAGGGAAAGAAAGCTCGAAGAAACAGGTCCCCGATCTCTCAAATTATGTGAGGTCTTGCATTCTAGACCATTGGCTAACCTACCTTCAACAAAAGGGTGCATTCTTGGCAAGGTATGATTGGTTTGCAATTGTTTCAGGAACTGACAACTTTGTCATTCCCTAAAAGTTACATGTTCTGTCAATCCAAACCAAATTCTGTAAAAAAACAAAAGACAAATTCCTTGTCAACAAAACTGCAGCCTAACTTTATTGTAAACAGTAAACAGAATATGATAAAGAGTCATAGTAATATGTTAAACAAACTGAATAGAGAAGAGAATGAACAAACAAACTTCACTGTCAAGCACATAAATTTTTTTTTTGACAACTCATGATTATAATGTAGATTCAAGATGGAACTCCTGAGTGGATTAGAATTGCCAACGAGGCTGCAAGAACAATACCTGGACGTGAAAATGGAGGAAACT</genome_strand>
        <mrna_strand>CATGGCTCCTCCAACTCCAAGACTAGTAATCCCCATAGACCTAAAGAAAAAGCCATGGCAACAAAAGTTGCCACTCCACAACCGTTGGCACCCAGAGATACCTCCTGTAACAGAGATTAAAACAGGGGAGATGTTCCGAATTGAGATGGTTGATTGGACAGCAGGCTCTATCCAAGATAATAACTCTGCAATTGATGTAAAAACCGTTGATCTATCCACT...................................................................................................................GTGCATTATCTCAGTGGGCCAATACGAGTCGTTGACACAGATGGAAATCCTGCTGAACCAGGTGATCTCCTTGCTGTTGAAATATGCAACTTAGGGCCTCTCCCTGGAGATGAATGGGGTTTTACAGCAATATTCGACAGAGAGAACGGTGGAGGATTTCTAACAGACCATTTTCCCCGTGCAACTAAAGCTATTTGGTATTTCGAAGGCATATATGCCTACTCACCTCATATACCAG.......................................................................................GTGTAAGATTTCCTGGTTTAATTCATCCTGGAATAATTGGAACAGCGCCTTCAAAAGAACTACTCAATATATGGAATGAGAGGGAAAGAAAGCTCGAAGAAACAGGTCCCCGATCTCTCAAATTATGTGAGGTCTTGCATTCTAGACCATTGGCTAACCTACCTCCAACAAAAGGGTGCATTCTTGGCAAG..................................................................................................................................................................................................................................................................................ATTTCAGATGGAACTCCTGAGTGGATTAGAATTNGCCACGAGGCTGCAAG-ACAATACCTGGACGTGAAAATGGAGGAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E471146" ref_strand="+" ref_description="SGN-E471146 [cSTB-22-L15]">
      <seq>atgcatcttaaggcctatccctggagatgaatggcgttttacagcaatattcgacagatagaacggtggtggatttctaacaaaccattttccccgtgcaactaaagctatttggtatttcgaaggcatatatgcctactcacctcatataccaggtgtaagatttcctggtttagttcatcctggaataattggaacagcgccttcaaaagaactactcaatatatggaatgagagggaaagaaagctcgaagaaactggtccccagtctctcaaattatgtgaggtcttgcattctagaccattggctaacctaccttcaacaaaagggtgcattcttggcaagattcaagatggaactgctgagtggaatagaattgccgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="24469" stop="23123"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24169" g_stop="24015" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24014" i_stop="23928" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23927" g_stop="23737" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="346" r_length="191" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23736" i_stop="23463" i_length="274">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23462" g_stop="23423" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="386" r_length="40" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E471146" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E471146" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24169" e_stop="24015"/>
          <exon e_start="23927" e_stop="23737"/>
          <exon e_start="23462" e_stop="23423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCAACTTAGGGCCTCTCCCTGGAGATGAATGGGGTTTTACAGCAATATTCGACAGAGAGAACGGTGGAGGATTTCTAACAGACCATTTTCCCCGTGCAACTAAAGCTATTTGGTATTTCGAAGGCATATATGCCTACTCACCTCATATACCAGGTAAGGCTGCATATCTTCTCCTAATATATCCTAGACAAATATACGTATCTAATCCTAATAAGATCTACTGAAAAATCTCACAAACAGGTGTAAGATTTCCTGGTTTAATTCATCCTGGAATAATTGGAACAGCGCCTTCAAAAGAACTACTCAATATATGGAATGAGAGGGAAAGAAAGCTCGAAGAAACAGGTCCCCGATCTCTCAAATTATGTGAGGTCTTGCATTCTAGACCATTGGCTAACCTACCTTCAACAAAAGGGTGCATTCTTGGCAAGGTATGATTGGTTTGCAATTGTTTCAGGAACTGACAACTTTGTCATTCCCTAAAAGTTACATGTTCTGTCAATCCAAACCAAATTCTGTAAAAAAACAAAAGACAAATTCCTTGTCAACAAAACTGCAGCCTAACTTTATTGTAAACAGTAAACAGAATATGATAAAGAGTCATAGTAATATGTTAAACAAACTGAATAGAGAAGAGAATGAACAAACAAACTTCACTGTCAAGCACATAAATTTTTTTTTTGACAACTCATGATTATAATGTAGATTCAAGATGGAACTCCTGAGTGGATTAGAATTGCCAACG</genome_strand>
        <mrna_strand>ATGCATCTTAAGGCCTATCCCTGGAGATGAATGGCGTTTTACAGCAATATTCGACAGATAGAACGGTGGTGGATTTCTAACAAACCATTTTCCCCGTGCAACTAAAGCTATTTGGTATTTCGAAGGCATATATGCCTACTCACCTCATATACCAG.......................................................................................GTGTAAGATTTCCTGGTTTAGTTCATCCTGGAATAATTGGAACAGCGCCTTCAAAAGAACTACTCAATATATGGAATGAGAGGGAAAGAAAGCTCGAAGAAACTGGTCCCCAGTCTCTCAAATTATGTGAGGTCTTGCATTCTAGACCATTGGCTAACCTACCTTCAACAAAAGGGTGCATTCTTGGCAAG..................................................................................................................................................................................................................................................................................ATTCAAGATGGAACTGCTGAGTGGAATAGAATTGCCGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E594933" ref_strand="+" ref_description="SGN-E594933 [38195]">
      <seq>cacactatggctcctccaactccaagactagtaatccccatagacctaaagaagaagccatgggaacaaaagttgccactccacaaccgttggcacccagagatacctcctgtaactgagattaaaacaggggagatgttccgaattgagatggttgattggacagcaggcgctatccaagataataactctgcaattgatgtaaaaactgttgatctatccactgtccattatctcagtgggccaataagagtagttgacacagatggaaatcctgctgaaccaggtgacctccttgctgttgaaatatgcaacttagggcctctccctggagatgaatggggttttacagcaatattcgacagagagaacggtggaggatttctaacagaccattttccccgtgcaactaaagctatttggtatttcgaaggcatatatgcctactcacctcatataccaggtgtaagatttcctggtttagttcatcctggaataattggaacagcgccttcaaaagaactactcaatatatggaatgagagggaaagaaagctcgaagaaactggtccccagtctctcaaattatgtgaggtcttgcattctagaccattggctaacctaccttcaacaaaagggtgcattcttggcaagattcaagatggaactgctgagtggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="24890" stop="23138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24592" g_stop="24368" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24367" i_stop="24253" i_length="115">
            <donor d_prob="0.852" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24252" g_stop="24015" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="463" r_length="238" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24014" i_stop="23928" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23927" g_stop="23737" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="654" r_length="191" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23736" i_stop="23463" i_length="274">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23462" g_stop="23436" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="681" r_length="27" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E594933" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E594933" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24592" e_stop="24368"/>
          <exon e_start="24252" e_stop="24015"/>
          <exon e_start="23927" e_stop="23737"/>
          <exon e_start="23462" e_stop="23436"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCACCATGGCTCCTCCAACTCCAAGACTAGTAATCCCCATAGACCTAAAGAAAAAGCCATGGCAACAAAAGTTGCCACTCCACAACCGTTGGCACCCAGAGATACCTCCTGTAACAGAGATTAAAACAGGGGAGATGTTCCGAATTGAGATGGTTGATTGGACAGCAGGCTCTATCCAAGATAATAACTCTGCAATTGATGTAAAAACCGTTGATCTATCCACTGTAAGTGTGCATAATCTAACATACCCGGTGCATCTAACCAAGAAAGAGTACTAGATCCTAAGTCATATGATGTTGGATATCACTTCAGGCTGAATCATATAACTCTCCTATGCAGGTGCATTATCTCAGTGGGCCAATACGAGTCGTTGACACAGATGGAAATCCTGCTGAACCAGGTGATCTCCTTGCTGTTGAAATATGCAACTTAGGGCCTCTCCCTGGAGATGAATGGGGTTTTACAGCAATATTCGACAGAGAGAACGGTGGAGGATTTCTAACAGACCATTTTCCCCGTGCAACTAAAGCTATTTGGTATTTCGAAGGCATATATGCCTACTCACCTCATATACCAGGTAAGGCTGCATATCTTCTCCTAATATATCCTAGACAAATATACGTATCTAATCCTAATAAGATCTACTGAAAAATCTCACAAACAGGTGTAAGATTTCCTGGTTTAATTCATCCTGGAATAATTGGAACAGCGCCTTCAAAAGAACTACTCAATATATGGAATGAGAGGGAAAGAAAGCTCGAAGAAACAGGTCCCCGATCTCTCAAATTATGTGAGGTCTTGCATTCTAGACCATTGGCTAACCTACCTTCAACAAAAGGGTGCATTCTTGGCAAGGTATGATTGGTTTGCAATTGTTTCAGGAACTGACAACTTTGTCATTCCCTAAAAGTTACATGTTCTGTCAATCCAAACCAAATTCTGTAAAAAAACAAAAGACAAATTCCTTGTCAACAAAACTGCAGCCTAACTTTATTGTAAACAGTAAACAGAATATGATAAAGAGTCATAGTAATATGTTAAACAAACTGAATAGAGAAGAGAATGAACAAACAAACTTCACTGTCAAGCACATAAATTTTTTTTTTGACAACTCATGATTATAATGTAGATTCAAGATGGAACTCCTGAGTGGATT</genome_strand>
        <mrna_strand>CACACTATGGCTCCTCCAACTCCAAGACTAGTAATCCCCATAGACCTAAAGAAGAAGCCATGGGAACAAAAGTTGCCACTCCACAACCGTTGGCACCCAGAGATACCTCCTGTAACTGAGATTAAAACAGGGGAGATGTTCCGAATTGAGATGGTTGATTGGACAGCAGGCGCTATCCAAGATAATAACTCTGCAATTGATGTAAAAACTGTTGATCTATCCACT...................................................................................................................GTCCATTATCTCAGTGGGCCAATAAGAGTAGTTGACACAGATGGAAATCCTGCTGAACCAGGTGACCTCCTTGCTGTTGAAATATGCAACTTAGGGCCTCTCCCTGGAGATGAATGGGGTTTTACAGCAATATTCGACAGAGAGAACGGTGGAGGATTTCTAACAGACCATTTTCCCCGTGCAACTAAAGCTATTTGGTATTTCGAAGGCATATATGCCTACTCACCTCATATACCAG.......................................................................................GTGTAAGATTTCCTGGTTTAGTTCATCCTGGAATAATTGGAACAGCGCCTTCAAAAGAACTACTCAATATATGGAATGAGAGGGAAAGAAAGCTCGAAGAAACTGGTCCCCAGTCTCTCAAATTATGTGAGGTCTTGCATTCTAGACCATTGGCTAACCTACCTTCAACAAAAGGGTGCATTCTTGGCAAG..................................................................................................................................................................................................................................................................................ATTCAAGATGGAACTGCTGAGTGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E345371" ref_strand="+" ref_description="SGN-E345371 [cTOF-13-C22]">
      <seq>atggctcctccaactccaagactagtaatccccatagacctaaagaaaaagccatggcaacaaaagttgccactccacaaccgttggcacccagagatacctcctgtaacagagattaaaacaggggagatgttccgaattgagatggttgattggacagcaggctctatccaagataataactctgcaattgatgtaaaaaccgttgatctatccactgtgcattatctcagtgggccaatacgagtcgttgacacagatggaaatcctgctgaaccaggtgatctccttgctgttgaaatatgcaacttagggcctctccctggagatgaatggggttttacagcaatattcgacagagagaacggtggaggatttctaacagaccattttccccgtgcaactaaagctatttggtatttcgaaggcatatatgcctactcacctcatataccaggtgtaagatttcctggtttaattcatcctggaataattggaacagcgccttcaaaagaactactcaatatatggaatgagagggaaagaaagctcgaagaaacaggtccccgatctctcaaattatgtgaggtcttgcattctagaccattggctaacctaccttcacaaaagggtgcattcttggcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="24886" stop="23437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24586" g_stop="24368" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24367" i_stop="24253" i_length="115">
            <donor d_prob="0.852" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24252" g_stop="24015" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="457" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24014" i_stop="23928" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23927" g_stop="23737" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="647" r_length="190" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E345371" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345371" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24586" e_stop="24368"/>
          <exon e_start="24252" e_stop="24015"/>
          <exon e_start="23927" e_stop="23737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCTCCTCCAACTCCAAGACTAGTAATCCCCATAGACCTAAAGAAAAAGCCATGGCAACAAAAGTTGCCACTCCACAACCGTTGGCACCCAGAGATACCTCCTGTAACAGAGATTAAAACAGGGGAGATGTTCCGAATTGAGATGGTTGATTGGACAGCAGGCTCTATCCAAGATAATAACTCTGCAATTGATGTAAAAACCGTTGATCTATCCACTGTAAGTGTGCATAATCTAACATACCCGGTGCATCTAACCAAGAAAGAGTACTAGATCCTAAGTCATATGATGTTGGATATCACTTCAGGCTGAATCATATAACTCTCCTATGCAGGTGCATTATCTCAGTGGGCCAATACGAGTCGTTGACACAGATGGAAATCCTGCTGAACCAGGTGATCTCCTTGCTGTTGAAATATGCAACTTAGGGCCTCTCCCTGGAGATGAATGGGGTTTTACAGCAATATTCGACAGAGAGAACGGTGGAGGATTTCTAACAGACCATTTTCCCCGTGCAACTAAAGCTATTTGGTATTTCGAAGGCATATATGCCTACTCACCTCATATACCAGGTAAGGCTGCATATCTTCTCCTAATATATCCTAGACAAATATACGTATCTAATCCTAATAAGATCTACTGAAAAATCTCACAAACAGGTGTAAGATTTCCTGGTTTAATTCATCCTGGAATAATTGGAACAGCGCCTTCAAAAGAACTACTCAATATATGGAATGAGAGGGAAAGAAAGCTCGAAGAAACAGGTCCCCGATCTCTCAAATTATGTGAGGTCTTGCATTCTAGACCATTGGCTAACCTACCTTCAACAAAAGGGTGCATTCTTGGCAAG</genome_strand>
        <mrna_strand>ATGGCTCCTCCAACTCCAAGACTAGTAATCCCCATAGACCTAAAGAAAAAGCCATGGCAACAAAAGTTGCCACTCCACAACCGTTGGCACCCAGAGATACCTCCTGTAACAGAGATTAAAACAGGGGAGATGTTCCGAATTGAGATGGTTGATTGGACAGCAGGCTCTATCCAAGATAATAACTCTGCAATTGATGTAAAAACCGTTGATCTATCCACT...................................................................................................................GTGCATTATCTCAGTGGGCCAATACGAGTCGTTGACACAGATGGAAATCCTGCTGAACCAGGTGATCTCCTTGCTGTTGAAATATGCAACTTAGGGCCTCTCCCTGGAGATGAATGGGGTTTTACAGCAATATTCGACAGAGAGAACGGTGGAGGATTTCTAACAGACCATTTTCCCCGTGCAACTAAAGCTATTTGGTATTTCGAAGGCATATATGCCTACTCACCTCATATACCAG.......................................................................................GTGTAAGATTTCCTGGTTTAATTCATCCTGGAATAATTGGAACAGCGCCTTCAAAAGAACTACTCAATATATGGAATGAGAGGGAAAGAAAGCTCGAAGAAACAGGTCCCCGATCTCTCAAATTATGTGAGGTCTTGCATTCTAGACCATTGGCTAACCTACCTTC-ACAAAAGGGTGCATTCTTGGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E333814" ref_strand="+" ref_description="SGN-E333814 [cTOD-22-J6]">
      <seq>catggctcctccaactccaagactagtaatccccatagacctaaagaaaaagccatggcaacaaaagttgccactccacaaccgttggcacccagagatacctcctgtaacagagattaaaacaggggagatgttccgaattgagatggttgattggacagcaggctctatccaagataataactctgcaattgatgtaaaaaccgttgatctatccactgtgcattatctcagtgggccaatacgagtcgttgacacagatggaaatcctgctgaaccaggtgatctccttgctgttgaaatatgcaacttagggcctctccctggagatgaatggggttttacagcaatattcgacagagagaacggtggaggatttctaacagaccattttccccgtgcaactaaagctatttggtatttcgaaggcatatatgcctactcacctcatataccaggtgtaagatttcctggtttaattcatcctggaataattggaacagcgccttcaaaagaactactcaatatatggaatgagagggaaagaaagctcgaagaaacaggtccccgatctctcaaattatgtgaggtcttgcattctagaccattggctaacctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="24887" stop="23466"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24587" g_stop="24368" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24367" i_stop="24253" i_length="115">
            <donor d_prob="0.852" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24252" g_stop="24015" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="458" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24014" i_stop="23928" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23927" g_stop="23766" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="620" r_length="162" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E333814" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333814" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24587" e_stop="24368"/>
          <exon e_start="24252" e_stop="24015"/>
          <exon e_start="23927" e_stop="23766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGCTCCTCCAACTCCAAGACTAGTAATCCCCATAGACCTAAAGAAAAAGCCATGGCAACAAAAGTTGCCACTCCACAACCGTTGGCACCCAGAGATACCTCCTGTAACAGAGATTAAAACAGGGGAGATGTTCCGAATTGAGATGGTTGATTGGACAGCAGGCTCTATCCAAGATAATAACTCTGCAATTGATGTAAAAACCGTTGATCTATCCACTGTAAGTGTGCATAATCTAACATACCCGGTGCATCTAACCAAGAAAGAGTACTAGATCCTAAGTCATATGATGTTGGATATCACTTCAGGCTGAATCATATAACTCTCCTATGCAGGTGCATTATCTCAGTGGGCCAATACGAGTCGTTGACACAGATGGAAATCCTGCTGAACCAGGTGATCTCCTTGCTGTTGAAATATGCAACTTAGGGCCTCTCCCTGGAGATGAATGGGGTTTTACAGCAATATTCGACAGAGAGAACGGTGGAGGATTTCTAACAGACCATTTTCCCCGTGCAACTAAAGCTATTTGGTATTTCGAAGGCATATATGCCTACTCACCTCATATACCAGGTAAGGCTGCATATCTTCTCCTAATATATCCTAGACAAATATACGTATCTAATCCTAATAAGATCTACTGAAAAATCTCACAAACAGGTGTAAGATTTCCTGGTTTAATTCATCCTGGAATAATTGGAACAGCGCCTTCAAAAGAACTACTCAATATATGGAATGAGAGGGAAAGAAAGCTCGAAGAAACAGGTCCCCGATCTCTCAAATTATGTGAGGTCTTGCATTCTAGACCATTGGCTAACCTAC</genome_strand>
        <mrna_strand>CATGGCTCCTCCAACTCCAAGACTAGTAATCCCCATAGACCTAAAGAAAAAGCCATGGCAACAAAAGTTGCCACTCCACAACCGTTGGCACCCAGAGATACCTCCTGTAACAGAGATTAAAACAGGGGAGATGTTCCGAATTGAGATGGTTGATTGGACAGCAGGCTCTATCCAAGATAATAACTCTGCAATTGATGTAAAAACCGTTGATCTATCCACT...................................................................................................................GTGCATTATCTCAGTGGGCCAATACGAGTCGTTGACACAGATGGAAATCCTGCTGAACCAGGTGATCTCCTTGCTGTTGAAATATGCAACTTAGGGCCTCTCCCTGGAGATGAATGGGGTTTTACAGCAATATTCGACAGAGAGAACGGTGGAGGATTTCTAACAGACCATTTTCCCCGTGCAACTAAAGCTATTTGGTATTTCGAAGGCATATATGCCTACTCACCTCATATACCAG.......................................................................................GTGTAAGATTTCCTGGTTTAATTCATCCTGGAATAATTGGAACAGCGCCTTCAAAAGAACTACTCAATATATGGAATGAGAGGGAAAGAAAGCTCGAAGAAACAGGTCCCCGATCTCTCAAATTATGTGAGGTCTTGCATTCTAGACCATTGGCTAACCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E334288" ref_strand="+" ref_description="SGN-E334288 [cTOD-21-A8]">
      <seq>catggctcctccaactccaagactagtaatccccatagacctaaagaaaaagccatggcaacaaaagttgccactccacaaccgttggcacccagagatacctcctgtaacagagattaaaacaggggagatgttccgaattgagatggttgattggacagcaggctctatccaagataataactctgcaattgatgtaaaaaccgttgatctatccactgtgcattatctcagtgggccaatacgagtcgttgacacagatggaaatcctgctgaaccaggtgatctccttgctgttgaaatatgcaacttagggcctctccctggagatgaatggggttttacagcaatattcgacagagagaacggtggaggatttctaacagaccattttccccgtgcaactaaagctatttggtatttcgaaggcatatatgcctactcacctcatataccaggtgtaagatttcctggtttaattcatcctggaataattggaacagcgccttcaaaagaactactcaatatatggaatgagagggaaagaaagctcgaagaaacaggtccccgatctctcaaattatgtgaggtcttgcattctagaccattggctaaccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="24887" stop="23467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24587" g_stop="24368" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24367" i_stop="24253" i_length="115">
            <donor d_prob="0.852" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24252" g_stop="24015" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="458" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24014" i_stop="23928" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23927" g_stop="23767" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="619" r_length="161" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E334288" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334288" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24587" e_stop="24368"/>
          <exon e_start="24252" e_stop="24015"/>
          <exon e_start="23927" e_stop="23767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGCTCCTCCAACTCCAAGACTAGTAATCCCCATAGACCTAAAGAAAAAGCCATGGCAACAAAAGTTGCCACTCCACAACCGTTGGCACCCAGAGATACCTCCTGTAACAGAGATTAAAACAGGGGAGATGTTCCGAATTGAGATGGTTGATTGGACAGCAGGCTCTATCCAAGATAATAACTCTGCAATTGATGTAAAAACCGTTGATCTATCCACTGTAAGTGTGCATAATCTAACATACCCGGTGCATCTAACCAAGAAAGAGTACTAGATCCTAAGTCATATGATGTTGGATATCACTTCAGGCTGAATCATATAACTCTCCTATGCAGGTGCATTATCTCAGTGGGCCAATACGAGTCGTTGACACAGATGGAAATCCTGCTGAACCAGGTGATCTCCTTGCTGTTGAAATATGCAACTTAGGGCCTCTCCCTGGAGATGAATGGGGTTTTACAGCAATATTCGACAGAGAGAACGGTGGAGGATTTCTAACAGACCATTTTCCCCGTGCAACTAAAGCTATTTGGTATTTCGAAGGCATATATGCCTACTCACCTCATATACCAGGTAAGGCTGCATATCTTCTCCTAATATATCCTAGACAAATATACGTATCTAATCCTAATAAGATCTACTGAAAAATCTCACAAACAGGTGTAAGATTTCCTGGTTTAATTCATCCTGGAATAATTGGAACAGCGCCTTCAAAAGAACTACTCAATATATGGAATGAGAGGGAAAGAAAGCTCGAAGAAACAGGTCCCCGATCTCTCAAATTATGTGAGGTCTTGCATTCTAGACCATTGGCTAACCTA</genome_strand>
        <mrna_strand>CATGGCTCCTCCAACTCCAAGACTAGTAATCCCCATAGACCTAAAGAAAAAGCCATGGCAACAAAAGTTGCCACTCCACAACCGTTGGCACCCAGAGATACCTCCTGTAACAGAGATTAAAACAGGGGAGATGTTCCGAATTGAGATGGTTGATTGGACAGCAGGCTCTATCCAAGATAATAACTCTGCAATTGATGTAAAAACCGTTGATCTATCCACT...................................................................................................................GTGCATTATCTCAGTGGGCCAATACGAGTCGTTGACACAGATGGAAATCCTGCTGAACCAGGTGATCTCCTTGCTGTTGAAATATGCAACTTAGGGCCTCTCCCTGGAGATGAATGGGGTTTTACAGCAATATTCGACAGAGAGAACGGTGGAGGATTTCTAACAGACCATTTTCCCCGTGCAACTAAAGCTATTTGGTATTTCGAAGGCATATATGCCTACTCACCTCATATACCAG.......................................................................................GTGTAAGATTTCCTGGTTTAATTCATCCTGGAATAATTGGAACAGCGCCTTCAAAAGAACTACTCAATATATGGAATGAGAGGGAAAGAAAGCTCGAAGAAACAGGTCCCCGATCTCTCAAATTATGTGAGGTCTTGCATTCTAGACCATTGGCTAACCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E409325" ref_strand="+" ref_description="SGN-E409325 [PPI-13-D10]">
      <seq>ccaagtcacactatggctcctccaactccaagactagtaatccccatagacctaaagaagaagccatgggaacaaaagttgccactccacaaccgttggcacccagagatacctcctgtaactgagattaaaacaggggagatgttccgaattgagatggttgattggacagcaggcgctatccaagataataactctgcaattgatgtaaaaactgttgatctatccactgtccattatctcagtgggccaataagagtagttgacacagatggaaatcctgctgaaccaggtgacctccttgctgttgaaatatgcaacttagggcctctccctggagatgaatggggttttacagcaatattcgacagagagaacggtggaggatttctaacagaccattttccccgtgcaactaaagctatttggtatttcgaaggcatatatgcctactcacctcatataccaggtgtaagatttcctggtttagttcatcctggaataattggaacagcgccttcaaaagaactactncatatatggaatgagagggaaagaaagctcgaagaaactggtccccagtctctcaaattatgtgaggtcttgcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="24896" stop="23485"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24596" g_stop="24368" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24367" i_stop="24253" i_length="115">
            <donor d_prob="0.852" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24252" g_stop="24015" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="469" r_length="238" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24014" i_stop="23928" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23927" g_stop="23785" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="612" r_length="143" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E409325" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E409325" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24596" e_stop="24368"/>
          <exon e_start="24252" e_stop="24015"/>
          <exon e_start="23927" e_stop="23785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGTCAC-C-ATGGCTCCTCCAACTCCAAGACTAGTAATCCCCATAGACCTAAAGAAAAAGCCATGGCAACAAAAGTTGCCACTCCACAACCGTTGGCACCCAGAGATACCTCCTGTAACAGAGATTAAAACAGGGGAGATGTTCCGAATTGAGATGGTTGATTGGACAGCAGGCTCTATCCAAGATAATAACTCTGCAATTGATGTAAAAACCGTTGATCTATCCACTGTAAGTGTGCATAATCTAACATACCCGGTGCATCTAACCAAGAAAGAGTACTAGATCCTAAGTCATATGATGTTGGATATCACTTCAGGCTGAATCATATAACTCTCCTATGCAGGTGCATTATCTCAGTGGGCCAATACGAGTCGTTGACACAGATGGAAATCCTGCTGAACCAGGTGATCTCCTTGCTGTTGAAATATGCAACTTAGGGCCTCTCCCTGGAGATGAATGGGGTTTTACAGCAATATTCGACAGAGAGAACGGTGGAGGATTTCTAACAGACCATTTTCCCCGTGCAACTAAAGCTATTTGGTATTTCGAAGGCATATATGCCTACTCACCTCATATACCAGGTAAGGCTGCATATCTTCTCCTAATATATCCTAGACAAATATACGTATCTAATCCTAATAAGATCTACTGAAAAATCTCACAAACAGGTGTAAGATTTCCTGGTTTAATTCATCCTGGAATAATTGGAACAGCGCCTTCAAAAGAACTACTCAATATATGGAATGAGAGGGAAAGAAAGCTCGAAGAAACAGGTCCCCGATCTCTCAAATTATGTGAGGTCTTGCATTCT</genome_strand>
        <mrna_strand>CCAAGTCACACTATGGCTCCTCCAACTCCAAGACTAGTAATCCCCATAGACCTAAAGAAGAAGCCATGGGAACAAAAGTTGCCACTCCACAACCGTTGGCACCCAGAGATACCTCCTGTAACTGAGATTAAAACAGGGGAGATGTTCCGAATTGAGATGGTTGATTGGACAGCAGGCGCTATCCAAGATAATAACTCTGCAATTGATGTAAAAACTGTTGATCTATCCACT...................................................................................................................GTCCATTATCTCAGTGGGCCAATAAGAGTAGTTGACACAGATGGAAATCCTGCTGAACCAGGTGACCTCCTTGCTGTTGAAATATGCAACTTAGGGCCTCTCCCTGGAGATGAATGGGGTTTTACAGCAATATTCGACAGAGAGAACGGTGGAGGATTTCTAACAGACCATTTTCCCCGTGCAACTAAAGCTATTTGGTATTTCGAAGGCATATATGCCTACTCACCTCATATACCAG.......................................................................................GTGTAAGATTTCCTGGTTTAGTTCATCCTGGAATAATTGGAACAGCGCCTTCAAAAGAACTACTNCATATATGGAATGAGAGGGAAAGAAAGCTCGAAGAAACTGGTCCCCAGTCTCTCAAATTATGTGAGGTCTTGCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E467388" ref_strand="+" ref_description="SGN-E467388 [cSTB-48-J21]">
      <seq>gaacaccaagtcacactatggctcctccaactccaagactagtaatccccatagacctaaagaagaagccatgggaacaaaagttgccactccacaaccgttggcaccccgagatacctcctgtaactgagattaaaacaggggagatgttccgaattgagatggttgattggacagcaggcgctatccaagataataactccgcaattgatgtaaaaactgttgatctatccactgtccattatctcagtgggccaataagagtagttgacacagatggaaatcctgctgaaccaggtgacctccttgctgttgaaatatgcaacttagggcctctccctggagatgaatggggttttacagcaatattcgacagagagaacggtggaggatttctaacagaccattttccccgtgcaactaaagctatttggtatttcgaaggcatatatgcctactcacctcatatacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="24901" stop="23717"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24601" g_stop="24368" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24367" i_stop="24253" i_length="115">
            <donor d_prob="0.852" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24252" g_stop="24017" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="472" r_length="236" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E467388" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E467388" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24601" e_stop="24368"/>
          <exon e_start="24252" e_stop="24017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACACTAAGTCAC-C-ATGGCTCCTCCAACTCCAAGACTAGTAATCCCCATAGACCTAAAGAAAAAGCCATGGCAACAAAAGTTGCCACTCCACAACCGTTGGCACCCAGAGATACCTCCTGTAACAGAGATTAAAACAGGGGAGATGTTCCGAATTGAGATGGTTGATTGGACAGCAGGCTCTATCCAAGATAATAACTCTGCAATTGATGTAAAAACCGTTGATCTATCCACTGTAAGTGTGCATAATCTAACATACCCGGTGCATCTAACCAAGAAAGAGTACTAGATCCTAAGTCATATGATGTTGGATATCACTTCAGGCTGAATCATATAACTCTCCTATGCAGGTGCATTATCTCAGTGGGCCAATACGAGTCGTTGACACAGATGGAAATCCTGCTGAACCAGGTGATCTCCTTGCTGTTGAAATATGCAACTTAGGGCCTCTCCCTGGAGATGAATGGGGTTTTACAGCAATATTCGACAGAGAGAACGGTGGAGGATTTCTAACAGACCATTTTCCCCGTGCAACTAAAGCTATTTGGTATTTCGAAGGCATATATGCCTACTCACCTCATATACC</genome_strand>
        <mrna_strand>GAACACCAAGTCACACTATGGCTCCTCCAACTCCAAGACTAGTAATCCCCATAGACCTAAAGAAGAAGCCATGGGAACAAAAGTTGCCACTCCACAACCGTTGGCACCCCGAGATACCTCCTGTAACTGAGATTAAAACAGGGGAGATGTTCCGAATTGAGATGGTTGATTGGACAGCAGGCGCTATCCAAGATAATAACTCCGCAATTGATGTAAAAACTGTTGATCTATCCACT...................................................................................................................GTCCATTATCTCAGTGGGCCAATAAGAGTAGTTGACACAGATGGAAATCCTGCTGAACCAGGTGACCTCCTTGCTGTTGAAATATGCAACTTAGGGCCTCTCCCTGGAGATGAATGGGGTTTTACAGCAATATTCGACAGAGAGAACGGTGGAGGATTTCTAACAGACCATTTTCCCCGTGCAACTAAAGCTATTTGGTATTTCGAAGGCATATATGCCTACTCACCTCATATACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E472219" ref_strand="+" ref_description="SGN-E472219 [cSTB-27-P16]">
      <seq>ccaagactagtaatccccatagacctaaagaagaagccatgggaacaaaagttgccactccacaaccgttggcacccagagatacctcctgtaactgagattaaaacaggggagatgttccgaattgagatggttgattggacagcaggcgctatccaagataataactctgcaattgatgtaaaaactgttgatctatccactgtccattatctcagtgggccaataagagtagttgacacagatggaaatcctgctgaaccaggtgacctccttgctgttgaaatatgcaacttagggcctctccctggagatgaatggggttttacagcaatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="24871" stop="23819"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24571" g_stop="24368" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24367" i_stop="24253" i_length="115">
            <donor d_prob="0.852" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24252" g_stop="24119" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="338" r_length="134" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E472219" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>338</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E472219" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24571" e_stop="24368"/>
          <exon e_start="24252" e_stop="24119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGACTAGTAATCCCCATAGACCTAAAGAAAAAGCCATGGCAACAAAAGTTGCCACTCCACAACCGTTGGCACCCAGAGATACCTCCTGTAACAGAGATTAAAACAGGGGAGATGTTCCGAATTGAGATGGTTGATTGGACAGCAGGCTCTATCCAAGATAATAACTCTGCAATTGATGTAAAAACCGTTGATCTATCCACTGTAAGTGTGCATAATCTAACATACCCGGTGCATCTAACCAAGAAAGAGTACTAGATCCTAAGTCATATGATGTTGGATATCACTTCAGGCTGAATCATATAACTCTCCTATGCAGGTGCATTATCTCAGTGGGCCAATACGAGTCGTTGACACAGATGGAAATCCTGCTGAACCAGGTGATCTCCTTGCTGTTGAAATATGCAACTTAGGGCCTCTCCCTGGAGATGAATGGGGTTTTACAGCAATATT</genome_strand>
        <mrna_strand>CCAAGACTAGTAATCCCCATAGACCTAAAGAAGAAGCCATGGGAACAAAAGTTGCCACTCCACAACCGTTGGCACCCAGAGATACCTCCTGTAACTGAGATTAAAACAGGGGAGATGTTCCGAATTGAGATGGTTGATTGGACAGCAGGCGCTATCCAAGATAATAACTCTGCAATTGATGTAAAAACTGTTGATCTATCCACT...................................................................................................................GTCCATTATCTCAGTGGGCCAATAAGAGTAGTTGACACAGATGGAAATCCTGCTGAACCAGGTGACCTCCTTGCTGTTGAAATATGCAACTTAGGGCCTCTCCCTGGAGATGAATGGGGTTTTACAGCAATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E407724" ref_strand="+" ref_description="SGN-E407724 [PPI-8-G14]">
      <seq>cgagggtcacactatggctcctccaactccaagactagtaatccccatagacctaaagaagaagccatgggaacaaaagttgccactccacaaccgttggcacccccgagataccctcctgtaactgagattaaaacaggggagaatgttccgaattgagatggttgattggacagcaggcgcctatccaagataataactccgcaattgatgtaaaaactgttgatctatccactgtccattatctcagtgggccaataagagtagttgacacagatggaaatcctgctgaaccaggtgacctccttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="24892" stop="23878"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24591" g_stop="24368" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="236" r_length="228" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24367" i_stop="24253" i_length="115">
            <donor d_prob="0.852" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24252" g_stop="24178" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="311" r_length="75" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E407724" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>299</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E407724" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24591" e_stop="24368"/>
          <exon e_start="24252" e_stop="24178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCATGGCTCCTCCAACTCCAAGACTAGTAATCCCCATAGACCTAAAGAAAAAGCCATGGCAACAAAAGTTGCCACTCCACAACCGTTGGCA-CCCAGAGATA-CCTCCTGTAACAGAGATTAAAACAGGGGAG-ATGTTCCGAATTGAGATGGTTGATTGGACAGCAGGC-TCTATCCAAGATAATAACTCTGCAATTGATGTAAAAACCGTTGATCTATCCACTGTAAGTGTGCATAATCTAACATACCCGGTGCATCTAACCAAGAAAGAGTACTAGATCCTAAGTCATATGATGTTGGATATCACTTCAGGCTGAATCATATAACTCTCCTATGCAGGTGCATTATCTCAGTGGGCCAATACGAGTCGTTGACACAGATGGAAATCCTGCTGAACCAGGTGATCTCCTTGCT</genome_strand>
        <mrna_strand>ACACTATGGCTCCTCCAACTCCAAGACTAGTAATCCCCATAGACCTAAAGAAGAAGCCATGGGAACAAAAGTTGCCACTCCACAACCGTTGGCACCCCCGAGATACCCTCCTGTAACTGAGATTAAAACAGGGGAGAATGTTCCGAATTGAGATGGTTGATTGGACAGCAGGCGCCTATCCAAGATAATAACTCCGCAATTGATGTAAAAACTGTTGATCTATCCACT...................................................................................................................GTCCATTATCTCAGTGGGCCAATAAGAGTAGTTGACACAGATGGAAATCCTGCTGAACCAGGTGACCTCCTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E374559" ref_strand="+" ref_description="SGN-E374559 [TUS-15-D19]">
      <seq>aaagttttatcgtgttatctagattaaattctagtgtgatgacttgatttaacctttgatttatctttagtgatttaacagagatacatcagttgcattcaccaagaaacagtgcaaaaagaagtgttatttttcacaagtatcatcattttgaggacagaaataatggtcctaaagctaatcctggacctaattgccttttgtagaggacccacaaatcaaaatctttaggatttgccaatatcttttgatggcttcacttcactgcaagtgcttggttttttgtctgcccacaaggatgatggtccctcaacggctgaacgtagtcttgtggtactcatctctgagaatacttttctacatatcacatatgtggttgcaatgtcttcaatcaagaaaggaaatgacttcactcatgttccgtagtttgattgggacatcttcacttgaaaaatgttactcaaggtactttctatcctggtggtagccagtgtgagaagtgttcccctcgtatcaattaggtgaacttcatacaaaatccttggtacttactatatttgaatgcagatgcacgaatcacactagtcatattgtgcactcaggccactagccagtgcttgagttgaactttagtgatttctgtttgtgtagattatatctatccatttgacattaactgtttgaagaagttgcaacagtgtccagcaactggggatcattccaaaaataggtgattccatgaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="25202" stop="26547"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25502" g_stop="26247" g_length="746"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="746" r_length="746" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E374559" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25502" e_stop="26247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTTTATCGTGTTATCTAGATTAAATTCTAGTGTGATGACTTGATTTAACCTTTGATTTATCTTTAGTGATTTAACAGAGATACATCAGTTGCATTCACCAAGAAACAGTGCAAAAAGAAGTGTTATTTTTCACAAGTATCATCATTTTGAGGACAGAAATAATGGTCCTAAAGCTAATCCTGGACCTAATTGCCTTTTGTAGAGGACCCACAAATCAAAATCTTTAGGATTTGCCAATATCTTTTGATGGCTTCACTTCACTGCAAGTGCTTGGTTTTTTGTCTGCCCACAAGGATGATGGTCCCTCAACGGCTGAACGTAGTCTTGTGGTACTCATCTCTGAGAATACTTTTCTACATATCACATATGTGGTTGCAATGTCTTCAATCAAGAAAGGAAATGACTTCACTCATGTTCCGTAGTTTGATTGGGACATCTTCACTTGAAAAATGTTACTCAAGGTACTTTCTATCCTGGTGGTAGCCAGTGTGAGAAGTGTTCCCCTCGTATCAATTAGGTGAACTTCATACAAAATCCTTGGTACTTACTATATTTGAATGCAGATGCACGAATCACACTAGTCATATTGTGCACTCAGGCCACTAGCCAGTGCTGAAGTTGAACTTTAGTGATTCCTGTTTGTGTAGATTATATCTATCCATTTGACATTAACTGTTTGAAGAAGTTGCAACAGTGTCCAGCAACTGGGGATCATTCCAAAAATAGGTGATTCCATGAACTG</genome_strand>
        <mrna_strand>AAAGTTTTATCGTGTTATCTAGATTAAATTCTAGTGTGATGACTTGATTTAACCTTTGATTTATCTTTAGTGATTTAACAGAGATACATCAGTTGCATTCACCAAGAAACAGTGCAAAAAGAAGTGTTATTTTTCACAAGTATCATCATTTTGAGGACAGAAATAATGGTCCTAAAGCTAATCCTGGACCTAATTGCCTTTTGTAGAGGACCCACAAATCAAAATCTTTAGGATTTGCCAATATCTTTTGATGGCTTCACTTCACTGCAAGTGCTTGGTTTTTTGTCTGCCCACAAGGATGATGGTCCCTCAACGGCTGAACGTAGTCTTGTGGTACTCATCTCTGAGAATACTTTTCTACATATCACATATGTGGTTGCAATGTCTTCAATCAAGAAAGGAAATGACTTCACTCATGTTCCGTAGTTTGATTGGGACATCTTCACTTGAAAAATGTTACTCAAGGTACTTTCTATCCTGGTGGTAGCCAGTGTGAGAAGTGTTCCCCTCGTATCAATTAGGTGAACTTCATACAAAATCCTTGGTACTTACTATATTTGAATGCAGATGCACGAATCACACTAGTCATATTGTGCACTCAGGCCACTAGCCAGTGCTTGAGTTGAACTTTAGTGATTTCTGTTTGTGTAGATTATATCTATCCATTTGACATTAACTGTTTGAAGAAGTTGCAACAGTGTCCAGCAACTGGGGATCATTCCAAAAATAGGTGATTCCATGAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E378897" ref_strand="+" ref_description="SGN-E378897 [TUS-1-F6]">
      <seq>aaagttttatcgtgttatctagattaaattctagtgtgatgacttgatttaacctttgatttatctttagtgatttaacagagatacatcagttgcattcaccaagaaacagtgcaaaaagaagtgttatttttcacaagtatcatcattttgaggacagaaataatggtcctaaagctaatcctggacctaattgccttttgtagaggacccacaaatcaaaatctttaggatttgccaatatcttttgatggcttcacttcactgcaagtgcttggttttttgtctgcccacaaggatgatggtccctcaacggctgaacgtagtcttgtggtactcatctctgagaatacttttctacatatcacatatgtggttgcaatgtcttcaatcaagaaaggaaatgacttcactcatgttccgtagtttgattgggacatcttcacttgaaaaatgttactcaaggtactttctatcctggtggtagccagtgtgagaagtgttcccctcgtatncattaggtgaacttcatacnaaatccttggtacttactatatttgaatgcagatgcacgaatcacactagtcatattgtgcactcaggccactagccagtgctgaagttgaactttagtgattcctggttgtgtagattatatctatccatttgacattactgtttgaagaaagttgcacagtgtccagcaactggggatcattccaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="25202" stop="26527"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25502" g_stop="26227" g_length="726"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="725" r_length="725" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E378897" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378897" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25502" e_stop="26227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTTTATCGTGTTATCTAGATTAAATTCTAGTGTGATGACTTGATTTAACCTTTGATTTATCTTTAGTGATTTAACAGAGATACATCAGTTGCATTCACCAAGAAACAGTGCAAAAAGAAGTGTTATTTTTCACAAGTATCATCATTTTGAGGACAGAAATAATGGTCCTAAAGCTAATCCTGGACCTAATTGCCTTTTGTAGAGGACCCACAAATCAAAATCTTTAGGATTTGCCAATATCTTTTGATGGCTTCACTTCACTGCAAGTGCTTGGTTTTTTGTCTGCCCACAAGGATGATGGTCCCTCAACGGCTGAACGTAGTCTTGTGGTACTCATCTCTGAGAATACTTTTCTACATATCACATATGTGGTTGCAATGTCTTCAATCAAGAAAGGAAATGACTTCACTCATGTTCCGTAGTTTGATTGGGACATCTTCACTTGAAAAATGTTACTCAAGGTACTTTCTATCCTGGTGGTAGCCAGTGTGAGAAGTGTTCCCCTCGTATCAATTAGGTGAACTTCATACAAAATCCTTGGTACTTACTATATTTGAATGCAGATGCACGAATCACACTAGTCATATTGTGCACTCAGGCCACTAGCCAGTGCTGAAGTTGAACTTTAGTGATTCCTGTTTGTGTAGATTATATCTATCCATTTGACATTAACTGTTTGAAG-AAGTTGCAACAGTGTCCAGCAACTGGGGATCATTCCAAAA</genome_strand>
        <mrna_strand>AAAGTTTTATCGTGTTATCTAGATTAAATTCTAGTGTGATGACTTGATTTAACCTTTGATTTATCTTTAGTGATTTAACAGAGATACATCAGTTGCATTCACCAAGAAACAGTGCAAAAAGAAGTGTTATTTTTCACAAGTATCATCATTTTGAGGACAGAAATAATGGTCCTAAAGCTAATCCTGGACCTAATTGCCTTTTGTAGAGGACCCACAAATCAAAATCTTTAGGATTTGCCAATATCTTTTGATGGCTTCACTTCACTGCAAGTGCTTGGTTTTTTGTCTGCCCACAAGGATGATGGTCCCTCAACGGCTGAACGTAGTCTTGTGGTACTCATCTCTGAGAATACTTTTCTACATATCACATATGTGGTTGCAATGTCTTCAATCAAGAAAGGAAATGACTTCACTCATGTTCCGTAGTTTGATTGGGACATCTTCACTTGAAAAATGTTACTCAAGGTACTTTCTATCCTGGTGGTAGCCAGTGTGAGAAGTGTTCCCCTCGTATNCATTAGGTGAACTTCATACNAAATCCTTGGTACTTACTATATTTGAATGCAGATGCACGAATCACACTAGTCATATTGTGCACTCAGGCCACTAGCCAGTGCTGAAGTTGAACTTTAGTGATTCCTGGTTGTGTAGATTATATCTATCCATTTGACATT-ACTGTTTGAAGAAAGTTGC-ACAGTGTCCAGCAACTGGGGATCATTCCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E204255" ref_strand="+" ref_description="SGN-E204255 [cLEC-13-B24]">
      <seq>aaagttttatcgtgttatctagattaaattctagtgtgatgacttgatttaacctttgatttatctttagtgatttaacagagatacatcagttgcattcaccaagaaacagtgcaaaaagaagtgttatttttcacaagtatcatcattttgaggacagaaataatggtcctaaagctaatcctggacctaattgccttttgtagaggacccacaaatcaaaatctttaggatttgccaatatcttttgatggcttcacttcactgcaagtgcttggttttttgtctgcccacaaggatgatggtccctcaacggctgaacgtagtcttgtggtactcatctctgagaatacttttctacatatcacatatgtggttgcaatgtcttcaatcaagaaaggaaatgacttcactcatgttccgtagtttgattgggacatcttcacttgaaaaatgttactcaaggtactttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="25202" stop="26276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25502" g_stop="25976" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="475" r_length="475" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E204255" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204255" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25502" e_stop="25976"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTTTATCGTGTTATCTAGATTAAATTCTAGTGTGATGACTTGATTTAACCTTTGATTTATCTTTAGTGATTTAACAGAGATACATCAGTTGCATTCACCAAGAAACAGTGCAAAAAGAAGTGTTATTTTTCACAAGTATCATCATTTTGAGGACAGAAATAATGGTCCTAAAGCTAATCCTGGACCTAATTGCCTTTTGTAGAGGACCCACAAATCAAAATCTTTAGGATTTGCCAATATCTTTTGATGGCTTCACTTCACTGCAAGTGCTTGGTTTTTTGTCTGCCCACAAGGATGATGGTCCCTCAACGGCTGAACGTAGTCTTGTGGTACTCATCTCTGAGAATACTTTTCTACATATCACATATGTGGTTGCAATGTCTTCAATCAAGAAAGGAAATGACTTCACTCATGTTCCGTAGTTTGATTGGGACATCTTCACTTGAAAAATGTTACTCAAGGTACTTTCTA</genome_strand>
        <mrna_strand>AAAGTTTTATCGTGTTATCTAGATTAAATTCTAGTGTGATGACTTGATTTAACCTTTGATTTATCTTTAGTGATTTAACAGAGATACATCAGTTGCATTCACCAAGAAACAGTGCAAAAAGAAGTGTTATTTTTCACAAGTATCATCATTTTGAGGACAGAAATAATGGTCCTAAAGCTAATCCTGGACCTAATTGCCTTTTGTAGAGGACCCACAAATCAAAATCTTTAGGATTTGCCAATATCTTTTGATGGCTTCACTTCACTGCAAGTGCTTGGTTTTTTGTCTGCCCACAAGGATGATGGTCCCTCAACGGCTGAACGTAGTCTTGTGGTACTCATCTCTGAGAATACTTTTCTACATATCACATATGTGGTTGCAATGTCTTCAATCAAGAAAGGAAATGACTTCACTCATGTTCCGTAGTTTGATTGGGACATCTTCACTTGAAAAATGTTACTCAAGGTACTTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E380002" ref_strand="+" ref_description="SGN-E380002 [TUS-1-F6](-)">
      <seq>tcactgcaagtgcttggtttttgtctgcccacaaggatgatggtccctcaacggctgaacgtagtcttgtggtactcatctctgagaatacttttctacatatcacatatgtggttgcaatgtcttcaatcaagaaaggaaatgacttcactcatgttccgtagtttgattgggacatcttcacttgaaaaatgttactcaaggtactttctatcctggtggtagccagtgtgagaagtgttcccctcgtatcaattaggtgaacttcatacaaaatccttggtacttactatatttgaatgcagatgcacgaatcacactagtcatattgtgcactcaggccactagccagtgctgaagttgaactttagtgattcctgtttgtgtagattatatctatccatttgacattaactgtttgaagaagttgcaacagtgtccagcaactggggatcattccaaaaataggtgattccatgaactgggagattgctatttgatatgcttgatgtcaatctgcatcatcttttggccaaggagaaaaattatttaagtagaattaacctataacttctcacccaactgcttgaactaaaaatagtacgtgccatatatgtataatatgtactacctccgttcatgtttaattgtcatgatttctatttttaggatcaaactataagaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="25463" stop="26749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25763" g_stop="26449" g_length="687"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="686" r_length="686" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E380002" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E380002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25763" e_stop="26449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTGCAAGTGCTTGGTTTTTTGTCTGCCCACAAGGATGATGGTCCCTCAACGGCTGAACGTAGTCTTGTGGTACTCATCTCTGAGAATACTTTTCTACATATCACATATGTGGTTGCAATGTCTTCAATCAAGAAAGGAAATGACTTCACTCATGTTCCGTAGTTTGATTGGGACATCTTCACTTGAAAAATGTTACTCAAGGTACTTTCTATCCTGGTGGTAGCCAGTGTGAGAAGTGTTCCCCTCGTATCAATTAGGTGAACTTCATACAAAATCCTTGGTACTTACTATATTTGAATGCAGATGCACGAATCACACTAGTCATATTGTGCACTCAGGCCACTAGCCAGTGCTGAAGTTGAACTTTAGTGATTCCTGTTTGTGTAGATTATATCTATCCATTTGACATTAACTGTTTGAAGAAGTTGCAACAGTGTCCAGCAACTGGGGATCATTCCAAAAATAGGTGATTCCATGAACTGGGAGATTGCTATTTGATATGCTTGATGTCAATCTGCATCATCTTTTGGCCAAGGAGAAAAATTATTTAAGTAGAATTAACCTATAACTTCTCACCCAACTGCTTGAACTAAAAATAGTACGTGCCATATATGTATAATATGTACTACCTCCGTTCATGTTTAATTGTCATGATTTCTATTTTTAGAGTCAAACTATAAGAAC</genome_strand>
        <mrna_strand>TCACTGCAAGTGCTTGG-TTTTTGTCTGCCCACAAGGATGATGGTCCCTCAACGGCTGAACGTAGTCTTGTGGTACTCATCTCTGAGAATACTTTTCTACATATCACATATGTGGTTGCAATGTCTTCAATCAAGAAAGGAAATGACTTCACTCATGTTCCGTAGTTTGATTGGGACATCTTCACTTGAAAAATGTTACTCAAGGTACTTTCTATCCTGGTGGTAGCCAGTGTGAGAAGTGTTCCCCTCGTATCAATTAGGTGAACTTCATACAAAATCCTTGGTACTTACTATATTTGAATGCAGATGCACGAATCACACTAGTCATATTGTGCACTCAGGCCACTAGCCAGTGCTGAAGTTGAACTTTAGTGATTCCTGTTTGTGTAGATTATATCTATCCATTTGACATTAACTGTTTGAAGAAGTTGCAACAGTGTCCAGCAACTGGGGATCATTCCAAAAATAGGTGATTCCATGAACTGGGAGATTGCTATTTGATATGCTTGATGTCAATCTGCATCATCTTTTGGCCAAGGAGAAAAATTATTTAAGTAGAATTAACCTATAACTTCTCACCCAACTGCTTGAACTAAAAATAGTACGTGCCATATATGTATAATATGTACTACCTCCGTTCATGTTTAATTGTCATGATTTCTATTTTTAGGATCAAACTATAAGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E374558" ref_strand="+" ref_description="SGN-E374558 [TUS-15-D19](-)">
      <seq>ttggtttttgtctgcccacaaggatgatggtccctcaacggctgaacgtagtcttgtggtactcatctctgagaatacttttctacatatcacatatgtggttgcaatgtcttcaatcaagaaaggaaatgacttcactcatgttccgtagtttgattgggacatcttcacttgaaaaatgttactcaaggtactttctatcctggtggtagccagtgtgagaagtgttcccctcgtatcaattaggtgaacttcatacaaaatccttggtacttactatatttgaatgcagatgcacgaatcacactagtcatattgtgcactcaggccactagccagtgctgaagttgaactttagtgattcctgtttgtgtagattatatctatccatttgacattaactgtttgaagaagttgcaacagtgtccagcaactggggatcattccaaaaataggtgattccatgaactgggagattgctatttgatatgcttgatgtcaatctgcatcatcttttggccaaggagaaaaattatttaagtagaattaacctataacttctcacccaactgcttgaactaaaaatagtacgtgccatatatgtataatatgtactacctccgttcatgtttaattgtcatgatttctatttttagagtcaaactataagaactttgacaaaaattttaaaacgtatctttatcatattgatatggaaaaaattataacttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="25476" stop="26810"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25776" g_stop="26510" g_length="735"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="734" r_length="734" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E374558" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25776" e_stop="26510"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGTTTTTTGTCTGCCCACAAGGATGATGGTCCCTCAACGGCTGAACGTAGTCTTGTGGTACTCATCTCTGAGAATACTTTTCTACATATCACATATGTGGTTGCAATGTCTTCAATCAAGAAAGGAAATGACTTCACTCATGTTCCGTAGTTTGATTGGGACATCTTCACTTGAAAAATGTTACTCAAGGTACTTTCTATCCTGGTGGTAGCCAGTGTGAGAAGTGTTCCCCTCGTATCAATTAGGTGAACTTCATACAAAATCCTTGGTACTTACTATATTTGAATGCAGATGCACGAATCACACTAGTCATATTGTGCACTCAGGCCACTAGCCAGTGCTGAAGTTGAACTTTAGTGATTCCTGTTTGTGTAGATTATATCTATCCATTTGACATTAACTGTTTGAAGAAGTTGCAACAGTGTCCAGCAACTGGGGATCATTCCAAAAATAGGTGATTCCATGAACTGGGAGATTGCTATTTGATATGCTTGATGTCAATCTGCATCATCTTTTGGCCAAGGAGAAAAATTATTTAAGTAGAATTAACCTATAACTTCTCACCCAACTGCTTGAACTAAAAATAGTACGTGCCATATATGTATAATATGTACTACCTCCGTTCATGTTTAATTGTCATGATTTCTATTTTTAGAGTCAAACTATAAGAACTTTGACAAAAATTTTAAAACGTATCTTTATCATATTGATATGGAAAAAATTATAACTTATA</genome_strand>
        <mrna_strand>TTGGT-TTTTGTCTGCCCACAAGGATGATGGTCCCTCAACGGCTGAACGTAGTCTTGTGGTACTCATCTCTGAGAATACTTTTCTACATATCACATATGTGGTTGCAATGTCTTCAATCAAGAAAGGAAATGACTTCACTCATGTTCCGTAGTTTGATTGGGACATCTTCACTTGAAAAATGTTACTCAAGGTACTTTCTATCCTGGTGGTAGCCAGTGTGAGAAGTGTTCCCCTCGTATCAATTAGGTGAACTTCATACAAAATCCTTGGTACTTACTATATTTGAATGCAGATGCACGAATCACACTAGTCATATTGTGCACTCAGGCCACTAGCCAGTGCTGAAGTTGAACTTTAGTGATTCCTGTTTGTGTAGATTATATCTATCCATTTGACATTAACTGTTTGAAGAAGTTGCAACAGTGTCCAGCAACTGGGGATCATTCCAAAAATAGGTGATTCCATGAACTGGGAGATTGCTATTTGATATGCTTGATGTCAATCTGCATCATCTTTTGGCCAAGGAGAAAAATTATTTAAGTAGAATTAACCTATAACTTCTCACCCAACTGCTTGAACTAAAAATAGTACGTGCCATATATGTATAATATGTACTACCTCCGTTCATGTTTAATTGTCATGATTTCTATTTTTAGAGTCAAACTATAAGAACTTTGACAAAAATTTTAAAACGTATCTTTATCATATTGATATGGAAAAAATTATAACTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E355552" ref_strand="+" ref_description="SGN-E355552 [cLHT-19-I18]">
      <seq>aaacttgaagccgactctttctgtctcaagtctcaacctcattgtttatatataggcacatttcgttctcttttcccttgcttattactatacaaatttttatttcttagctgcaaaagtatattgctaattcttcatgctccgttaaccgattaatatatatacaaaaatatcaatataacagcaaaacggaaaaatgagttgtaatggttgtcgagtccttcgaaaaggatgcagtgataactgtatactgagaccttgtttgcaatggatcgaaacaccggaagcacaaggacacgctactgtatctgtagctaagttttttggccgtgctggacttatgtccttcatttccgccgttccagaaaaccaacggcctgctttgtttcagtccttgttatacgaaggtgctgggagaacagtgaacccagtcaacggtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="29260" stop="30377"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29560" g_stop="29937" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="380" r_length="380" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29938" i_stop="30015" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30016" g_stop="30077" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="442" r_length="62" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E355552" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355552" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29560" e_stop="29937"/>
          <exon e_start="30016" e_stop="30077"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTGAAGCCGACTCTTTCTCTCTCAAGTCTCAACCTCATTGTTTATATATAGGCACATTTCATTCTCTTTT-CCTTGCTTATTACTATCCAAATTTTTATTTCTT-GCTGCAAAAGTATATCGCTATTTGTTCATGTTCCGGTAACCAATTAATATATATACAAAAATATCAGTATAACAACAAAACGGAAAAATGAGTTGTAATGGTTGTCGAGTCCTTCGAAAAGGATGCAGTGATAACTGTATATTGAGACCTTGTTTGCAATGGATCGAAACACCGGAAGCACAAGGACACGCTACTGTATTTGTAGCTAAGTTTTTTGGCCGTGCTGGACTTATGTCCTTCATTTCCGCCGTTCCAGAAAACCAACGGCCTGGTATAGTCTCTTTGTTCATCAACTCTTTTTTTTTTTTGGTTTATCAACTCTGATTGATTTTGTGTATTTTGCTTGCAGCTTTGTTTCAGTCCTTGTTATACGAAGCTGCTGGGAGAACAGTGAACCCAGTCAACGGTGCT</genome_strand>
        <mrna_strand>AAACTTGAAGCCGACTCTTTCTGTCTCAAGTCTCAACCTCATTGTTTATATATAGGCACATTTCGTTCTCTTTTCCCTTGCTTATTACTATACAAATTTTTATTTCTTAGCTGCAAAAGTATATTGCTAATTCTTCATGCTCCGTTAACCGATTAATATATATACAAAAATATCAATATAACAGCAAAACGGAAAAATGAGTTGTAATGGTTGTCGAGTCCTTCGAAAAGGATGCAGTGATAACTGTATACTGAGACCTTGTTTGCAATGGATCGAAACACCGGAAGCACAAGGACACGCTACTGTATCTGTAGCTAAGTTTTTTGGCCGTGCTGGACTTATGTCCTTCATTTCCGCCGTTCCAGAAAACCAACGGCCTG..............................................................................CTTTGTTTCAGTCCTTGTTATACGAAGGTGCTGGGAGAACAGTGAACCCAGTCAACGGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E290659" ref_strand="+" ref_description="SGN-E290659 [cLET-10-E23]">
      <seq>aacttgaagccgactctttctctctcaagtctcaacctcattgtttatatataggcacatttcattctcttttccttgcttattactatccaaatttttatttcttgctgcaaaagtatatcgctatttgttcatgttccggtaaccaattaatatatatacaaaaatatcagtataacaacaaaacggaaaaatgagttgtaatggttgtcgagtccttcgaaaaggatgcagtgataactgtatattgagaccttgtttgcaatggatcgaaacaccggaagcacaaggacacgctactgtatttgtagctaagttttttggccgtgctggacttatgtccttcatttccgccgttccagaaaaccaacggcctgctttgtttcagtccttgttatacgaagctgctgggagaacagtgaacccagtcaacggtgctgtaggtttattatggacaggtaattggcacgtctgtcaagcggcggtggaaaccgtcctccgcggcggcgcgttacggccgatctctgaatttctcggcgcgtcggtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="29261" stop="30486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29561" g_stop="29937" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29938" i_stop="30015" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30016" g_stop="30186" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="548" r_length="171" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E290659" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290659" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29561" e_stop="29937"/>
          <exon e_start="30016" e_stop="30186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTGAAGCCGACTCTTTCTCTCTCAAGTCTCAACCTCATTGTTTATATATAGGCACATTTCATTCTCTTTTCCTTGCTTATTACTATCCAAATTTTTATTTCTTGCTGCAAAAGTATATCGCTATTTGTTCATGTTCCGGTAACCAATTAATATATATACAAAAATATCAGTATAACAACAAAACGGAAAAATGAGTTGTAATGGTTGTCGAGTCCTTCGAAAAGGATGCAGTGATAACTGTATATTGAGACCTTGTTTGCAATGGATCGAAACACCGGAAGCACAAGGACACGCTACTGTATTTGTAGCTAAGTTTTTTGGCCGTGCTGGACTTATGTCCTTCATTTCCGCCGTTCCAGAAAACCAACGGCCTGGTATAGTCTCTTTGTTCATCAACTCTTTTTTTTTTTTGGTTTATCAACTCTGATTGATTTTGTGTATTTTGCTTGCAGCTTTGTTTCAGTCCTTGTTATACGAAGCTGCTGGGAGAACAGTGAACCCAGTCAACGGTGCTGTAGGTTTATTATGGACAGGTAATTGGCACGTCTGTCAAGCGGCGGTGGAAACCGTCCTCCGCGGCGGCGCGTTACGGCCGATCTCTGAATTTCTCGGCGCGTCGGTAG</genome_strand>
        <mrna_strand>AACTTGAAGCCGACTCTTTCTCTCTCAAGTCTCAACCTCATTGTTTATATATAGGCACATTTCATTCTCTTTTCCTTGCTTATTACTATCCAAATTTTTATTTCTTGCTGCAAAAGTATATCGCTATTTGTTCATGTTCCGGTAACCAATTAATATATATACAAAAATATCAGTATAACAACAAAACGGAAAAATGAGTTGTAATGGTTGTCGAGTCCTTCGAAAAGGATGCAGTGATAACTGTATATTGAGACCTTGTTTGCAATGGATCGAAACACCGGAAGCACAAGGACACGCTACTGTATTTGTAGCTAAGTTTTTTGGCCGTGCTGGACTTATGTCCTTCATTTCCGCCGTTCCAGAAAACCAACGGCCTG..............................................................................CTTTGTTTCAGTCCTTGTTATACGAAGCTGCTGGGAGAACAGTGAACCCAGTCAACGGTGCTGTAGGTTTATTATGGACAGGTAATTGGCACGTCTGTCAAGCGGCGGTGGAAACCGTCCTCCGCGGCGGCGCGTTACGGCCGATCTCTGAATTTCTCGGCGCGTCGGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E287927" ref_strand="+" ref_description="SGN-E287927 [cLES-7-A15]">
      <seq>cggtaaccaattaatatatatacaaaaatatcagtataacaacaaaacggaaaaatgagttgtaatggttgtcgagtccttcgaaaaggatgcagtgataactgtatattgagaccttgtttgcaatggatcgaaacaccggaagcacaaggacacgctactgtatttgtagctaagttttttggccgtgctggacttatgtccttcatttccgccgttccagaaaaccaacggcctgctttgtttcagtccttgttatacgaagctgctgggagaacagtgaacccagtcaacggtgctgtaggtttattatggacaggtaattggcacgtctgtcaagcggcggtggaaaccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="29400" stop="30432"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29700" g_stop="29937" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29938" i_stop="30015" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30016" g_stop="30132" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="355" r_length="117" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E287927" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287927" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29700" e_stop="29937"/>
          <exon e_start="30016" e_stop="30132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGTAACCAATTAATATATATACAAAAATATCAGTATAACAACAAAACGGAAAAATGAGTTGTAATGGTTGTCGAGTCCTTCGAAAAGGATGCAGTGATAACTGTATATTGAGACCTTGTTTGCAATGGATCGAAACACCGGAAGCACAAGGACACGCTACTGTATTTGTAGCTAAGTTTTTTGGCCGTGCTGGACTTATGTCCTTCATTTCCGCCGTTCCAGAAAACCAACGGCCTGGTATAGTCTCTTTGTTCATCAACTCTTTTTTTTTTTTGGTTTATCAACTCTGATTGATTTTGTGTATTTTGCTTGCAGCTTTGTTTCAGTCCTTGTTATACGAAGCTGCTGGGAGAACAGTGAACCCAGTCAACGGTGCTGTAGGTTTATTATGGACAGGTAATTGGCACGTCTGTCAAGCGGCGGTGGAAACCG</genome_strand>
        <mrna_strand>CGGTAACCAATTAATATATATACAAAAATATCAGTATAACAACAAAACGGAAAAATGAGTTGTAATGGTTGTCGAGTCCTTCGAAAAGGATGCAGTGATAACTGTATATTGAGACCTTGTTTGCAATGGATCGAAACACCGGAAGCACAAGGACACGCTACTGTATTTGTAGCTAAGTTTTTTGGCCGTGCTGGACTTATGTCCTTCATTTCCGCCGTTCCAGAAAACCAACGGCCTG..............................................................................CTTTGTTTCAGTCCTTGTTATACGAAGCTGCTGGGAGAACAGTGAACCCAGTCAACGGTGCTGTAGGTTTATTATGGACAGGTAATTGGCACGTCTGTCAAGCGGCGGTGGAAACCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E374048" ref_strand="+" ref_description="SGN-E374048 [TUS-33-I19]">
      <seq>gctactgtatttgtagctaagttttttggccgtgctggacttatgtccttcatttccgccgttccagaaaaccaacggcctgctttgtttcagtccttgttatacgaagctgctgggagaacagtgaacccagtcaacggtgctgtaggtttattatggacaggtaattggcacgtctgtcaagcggcggtggaaaccgtcctccgcggcggcgcgttacggccgatctctgaatttctcggcgcgtcggtagagattgatgaggtgtctgattgcaccgatgtatttaagcttcaggatccaagtctaaacatgcgaccgaagatgcagaaacgacgtcgttctcctgaggaaacttcaatgttggatctcagtttaacaccaggttttaatcagaaagtgtataatagtcaccctttgccggagaatcatcggcgacctggaactccgtctatgaattcagaagaatctggaacaactacttgttttgagagtagtgctgtcattggagatcatcaaggaaaagaacccaaattactcagcttgttcaattagtttgtattaatattttccattttcttttttttttttactatgaggaaggttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="29556" stop="30842"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29856" g_stop="29937" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29938" i_stop="30015" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30016" g_stop="30542" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="609" r_length="527" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E374048" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29856" e_stop="29937"/>
          <exon e_start="30016" e_stop="30542"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTACTGTATTTGTAGCTAAGTTTTTTGGCCGTGCTGGACTTATGTCCTTCATTTCCGCCGTTCCAGAAAACCAACGGCCTGGTATAGTCTCTTTGTTCATCAACTCTTTTTTTTTTTTGGTTTATCAACTCTGATTGATTTTGTGTATTTTGCTTGCAGCTTTGTTTCAGTCCTTGTTATACGAAGCTGCTGGGAGAACAGTGAACCCAGTCAACGGTGCTGTAGGTTTATTATGGACAGGTAATTGGCACGTCTGTCAAGCGGCGGTGGAAACCGTCCTCCGCGGCGGCGCGTTACGGCCGATCTCTGAATTTCTCGGCGCGTCGGTAGAGATTGATGAGGTGTCTGATTGCACCGATGTATTTAAGCTTCAGGATCCAAGTCTAAACATGCGACCGAAGATGCAGAAACGACGTCGTTCTCCTGAGGAAACTTCAATGTTGGATCTCAGTTTAACACCAGGTTTTAATCAGAAAGTGTATAATAGTCACCCTTTGCCGGAGAATCATCGGCGACCTGGAACTCCGTCTATGAATTCAGAAGAATCTGGAACAACTACTTGTTTTGAGAGTAGTGCTGTCATTGGAGATCATCAAGGAAAAGAACCCAAATTACTCAGCTTGTTCAATTAGTTTGTATTAATATTTTCCATTTTCTTTTTTTTTTTTACTATGAGGAAGGTTTTT</genome_strand>
        <mrna_strand>GCTACTGTATTTGTAGCTAAGTTTTTTGGCCGTGCTGGACTTATGTCCTTCATTTCCGCCGTTCCAGAAAACCAACGGCCTG..............................................................................CTTTGTTTCAGTCCTTGTTATACGAAGCTGCTGGGAGAACAGTGAACCCAGTCAACGGTGCTGTAGGTTTATTATGGACAGGTAATTGGCACGTCTGTCAAGCGGCGGTGGAAACCGTCCTCCGCGGCGGCGCGTTACGGCCGATCTCTGAATTTCTCGGCGCGTCGGTAGAGATTGATGAGGTGTCTGATTGCACCGATGTATTTAAGCTTCAGGATCCAAGTCTAAACATGCGACCGAAGATGCAGAAACGACGTCGTTCTCCTGAGGAAACTTCAATGTTGGATCTCAGTTTAACACCAGGTTTTAATCAGAAAGTGTATAATAGTCACCCTTTGCCGGAGAATCATCGGCGACCTGGAACTCCGTCTATGAATTCAGAAGAATCTGGAACAACTACTTGTTTTGAGAGTAGTGCTGTCATTGGAGATCATCAAGGAAAAGAACCCAAATTACTCAGCTTGTTCAATTAGTTTGTATTAATATTTTCCATTTTCTTTTTTTTTTTTACTATGAGGAAGGTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E305560" ref_strand="+" ref_description="SGN-E305560 [cLEX-14-K23]">
      <seq>gctactgtatttgtagctaagttttttggccgtgctggacttatgtccttcatttccgccgttccagaaaaccaacggcctgctttgtttcagtccttgttatacgaagctgctgggagaacagtgaacccagtcaacggtgctgtaggtttattatggacaggtaattggcacgtctgtcaagcggcggtggaaaccgtcctccgcggcggcgcgttacggccgatctctgaatttctcggcgcgtcggtagagattgatgaggtgtctgattgcaccgatgtatttaagcttcaggatccaagtctaaacatgcgaccgaagatgcagaaacgacgtcgttctcctgaggaaacttcaatgttggatctcagtttaacaccaggttttaatcagaaagtgtataatagtcaccctttgccggagaatcatcggcgacctggaactccgtctatgaattcagaagaatctggaacaactacttgttttgagagtagtgctgtcattggagatcatcaaggaaaagaacccaaattactcagcttgttcaattagtttgtattaatattttccattttcttttttttttttactatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="29556" stop="30830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29856" g_stop="29937" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29938" i_stop="30015" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30016" g_stop="30530" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="597" r_length="515" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E305560" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29856" e_stop="29937"/>
          <exon e_start="30016" e_stop="30530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTACTGTATTTGTAGCTAAGTTTTTTGGCCGTGCTGGACTTATGTCCTTCATTTCCGCCGTTCCAGAAAACCAACGGCCTGGTATAGTCTCTTTGTTCATCAACTCTTTTTTTTTTTTGGTTTATCAACTCTGATTGATTTTGTGTATTTTGCTTGCAGCTTTGTTTCAGTCCTTGTTATACGAAGCTGCTGGGAGAACAGTGAACCCAGTCAACGGTGCTGTAGGTTTATTATGGACAGGTAATTGGCACGTCTGTCAAGCGGCGGTGGAAACCGTCCTCCGCGGCGGCGCGTTACGGCCGATCTCTGAATTTCTCGGCGCGTCGGTAGAGATTGATGAGGTGTCTGATTGCACCGATGTATTTAAGCTTCAGGATCCAAGTCTAAACATGCGACCGAAGATGCAGAAACGACGTCGTTCTCCTGAGGAAACTTCAATGTTGGATCTCAGTTTAACACCAGGTTTTAATCAGAAAGTGTATAATAGTCACCCTTTGCCGGAGAATCATCGGCGACCTGGAACTCCGTCTATGAATTCAGAAGAATCTGGAACAACTACTTGTTTTGAGAGTAGTGCTGTCATTGGAGATCATCAAGGAAAAGAACCCAAATTACTCAGCTTGTTCAATTAGTTTGTATTAATATTTTCCATTTTCTTTTTTTTTTTTACTATG</genome_strand>
        <mrna_strand>GCTACTGTATTTGTAGCTAAGTTTTTTGGCCGTGCTGGACTTATGTCCTTCATTTCCGCCGTTCCAGAAAACCAACGGCCTG..............................................................................CTTTGTTTCAGTCCTTGTTATACGAAGCTGCTGGGAGAACAGTGAACCCAGTCAACGGTGCTGTAGGTTTATTATGGACAGGTAATTGGCACGTCTGTCAAGCGGCGGTGGAAACCGTCCTCCGCGGCGGCGCGTTACGGCCGATCTCTGAATTTCTCGGCGCGTCGGTAGAGATTGATGAGGTGTCTGATTGCACCGATGTATTTAAGCTTCAGGATCCAAGTCTAAACATGCGACCGAAGATGCAGAAACGACGTCGTTCTCCTGAGGAAACTTCAATGTTGGATCTCAGTTTAACACCAGGTTTTAATCAGAAAGTGTATAATAGTCACCCTTTGCCGGAGAATCATCGGCGACCTGGAACTCCGTCTATGAATTCAGAAGAATCTGGAACAACTACTTGTTTTGAGAGTAGTGCTGTCATTGGAGATCATCAAGGAAAAGAACCCAAATTACTCAGCTTGTTCAATTAGTTTGTATTAATATTTTCCATTTTCTTTTTTTTTTTTACTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E733870" ref_strand="+" ref_description="SGN-E733870 [LB11AF09]">
      <seq>ctttgtttcagtccttgttatacgaagctgctgggagaacagtgaacccagtcaacggtgctgtaggtttattatggacaggtaattggcacgtctgtcaagcggcggtggaaaccgtcctccgcggcggcgcgttacggccgatctctgaatttctcggcgcgtcggtagagattgatgaggtgtctgattgcaccgatgtatttaagcttcaggatccaagtctaaacatgcgaccgaagatgcagaaacgacgtcgttctcctgaggaaacttcaatgttggatctcagtttaacaccaggttttaatcagaaagtgtataatagtcaccctttgccggagaatcatcggcgacctggaactccgtctatgaattcagaagaatctggaacaactacttgttttgagagtagtgctgtcattggagatcatcaaggaaaagaacccaaattactcagcttgttcaattagtttgtattaatattttccattttcttttttttttttactatgaggaaggttttttcctggaagtaaaattccggcgaatttttgtaaattattggcactggatttccctcgtgtaaaaaggaggggaaagtgaaagttttgccggggattccttccttgttttgttattttctcctttttgttttcataacgagtcttatgaatgttgaacattgaataaactgattgttaatcgatttaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="29716" stop="33266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30016" g_stop="30728" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="713" r_length="713" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30729" i_stop="31991" i_length="1263">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31992" g_stop="32010" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="714" r_stop="732" r_length="19" r_score="0.789"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E733870" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733870" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30016" e_stop="30728"/>
          <exon e_start="31992" e_stop="32010"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGTTTCAGTCCTTGTTATACGAAGCTGCTGGGAGAACAGTGAACCCAGTCAACGGTGCTGTAGGTTTATTATGGACAGGTAATTGGCACGTCTGTCAAGCGGCGGTGGAAACCGTCCTCCGCGGCGGCGCGTTACGGCCGATCTCTGAATTTCTCGGCGCGTCGGTAGAGATTGATGAGGTGTCTGATTGCACCGATGTATTTAAGCTTCAGGATCCAAGTCTAAACATGCGACCGAAGATGCAGAAACGACGTCGTTCTCCTGAGGAAACTTCAATGTTGGATCTCAGTTTAACACCAGGTTTTAATCAGAAAGTGTATAATAGTCACCCTTTGCCGGAGAATCATCGGCGACCTGGAACTCCGTCTATGAATTCAGAAGAATCTGGAACAACTACTTGTTTTGAGAGTAGTGCTGTCATTGGAGATCATCAAGGAAAAGAACCCAAATTACTCAGCTTGTTCAATTAGTTTGTATTAATATTTTCCATTTTCTTTTTTTTTTTTACTATGAGGAAGGTTTTTTCCTGGAAGTAAAATTCCGGCGAATTTTTGTAAATTATTGGCACTGGATTTCCCTCGTGTAGAAAGGAGGGGAAAGTGAAAGTTTTGCCGGTGATTCCTTCCTTGTTTTGTTATTTTCTCCTTTTTGTTTTCATAACGAGTCTTATGAATGTTGAACATTGAATAAACTGATTGTTAATCGATTTTGTTCATAATTCACTAGTTTAACTTTTATCATTAATAAATGGATACATTACGTTTTCGGATAAATCTTTGATCATTTTTTTATGGTTACCAAAAGTCTTTGATTAGATAAGATTTTGGACCTAAATACGATTTAGTCACGATCGCTAATCCTAAAATTGTGTTTTATTAGGCCAAAGGTTGTGATGATTGAAATGCTAATTAGGATAAGAATTTTAAGTAAGAAAGAATTAAAAAGAGTGAGTTCCAAATAGGTAGGGGAAAGAGTCAACCTAATTGACTTACCCACGTAGAGGTGTATGTAGGTATATTTTGATTGGAGGAATCGGTAGTTATCCAAAGTTTGAGGTAAGTAAAACATTAGAAATGGAAATGAAAGGGAGAAGAAGCAAGTGGGTATGTTATTGTGGGCCGCGAAAACCTGCAAATGGACAAAAGGGGTTGGATTTGTGAATCCAAGAGAGAGAACGAGGCGGCTTTTGGAGAGCGTTAAGAGGCGTAGTACTAATATTACTCTTCTATTACTTTCTCTCTTCCCTTTTTTATTTTTAATTGGTATTCTTTTCGTTTTAAAAATGATGATTTATTTTGATTTTCAACGAAGTTTAAGAAAAAAAAAAAGATTTTTTATGTTAAATGTATCAAAATATCCTTTAATTTTGTGTTTTAACATGCCACGTGGTAAGATAAAGTTAAAGTGTTATAAAAAAATGGGTCATTCTTTTTTAAACATACTAAAAAGAAAATATGGTCATTCTTTTTAAACGGAGAGAGTATTGTTTTGTTGTTAAAATTAAATTATAAGAATTTGATTAATATATTTTTTAAATTGCAATTTATAGTATAATTTTTGAATATTTAAAATTTTATATTAAAAATATTAAATTAATTTAATAATTAAAATTATATAAATTGACTTTTGAAAAGCACAACATACAAATAAAAGTGAACGGAGGCAGTATAAGATTACTCGTTCTTTTTATTTGTCATATCATATCATTAATTTAATTAGCTTTTAAAGTAAATAAAATTAAAATAAGCTATTTTCTTTGTCTAGTAATTTTTGTTTTCGAAAGACAAATAATTAAAGTTGATTAGAAATTTGGGCTTGGAATCTTTGATTTTAAATGAAATCGATATATTTGTAAACTACGTAAAATGTATTATATGTCATAATAATTAACAATTCAAAATGTTTAAAAGATCAATGAATAATTTACGATCAATCATAGACTTGTTTAAATATCGAAATTCGAAAAGTAATACATAAAAAAAGACAAACAAA</genome_strand>
        <mrna_strand>CTTTGTTTCAGTCCTTGTTATACGAAGCTGCTGGGAGAACAGTGAACCCAGTCAACGGTGCTGTAGGTTTATTATGGACAGGTAATTGGCACGTCTGTCAAGCGGCGGTGGAAACCGTCCTCCGCGGCGGCGCGTTACGGCCGATCTCTGAATTTCTCGGCGCGTCGGTAGAGATTGATGAGGTGTCTGATTGCACCGATGTATTTAAGCTTCAGGATCCAAGTCTAAACATGCGACCGAAGATGCAGAAACGACGTCGTTCTCCTGAGGAAACTTCAATGTTGGATCTCAGTTTAACACCAGGTTTTAATCAGAAAGTGTATAATAGTCACCCTTTGCCGGAGAATCATCGGCGACCTGGAACTCCGTCTATGAATTCAGAAGAATCTGGAACAACTACTTGTTTTGAGAGTAGTGCTGTCATTGGAGATCATCAAGGAAAAGAACCCAAATTACTCAGCTTGTTCAATTAGTTTGTATTAATATTTTCCATTTTCTTTTTTTTTTTTACTATGAGGAAGGTTTTTTCCTGGAAGTAAAATTCCGGCGAATTTTTGTAAATTATTGGCACTGGATTTCCCTCGTGTAAAAAGGAGGGGAAAGTGAAAGTTTTGCCGGGGATTCCTTCCTTGTTTTGTTATTTTCTCCTTTTTGTTTTCATAACGAGTCTTATGAATGTTGAACATTGAATAAACTGATTGTTAATCGATTTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E370336" ref_strand="+" ref_description="SGN-E370336 [TUS-28-A9](-)">
      <seq>catcccagagcaagcaaggatcactgaagatgggatgtacagggccattgacatttatttgaaggcacatccagctctaagcgacatagaaagaaaaaaggtttgtggtattatggactgtcaaaaactatctcgagaagcttgtgctcatgctgctcaaaatgataggctccctgttcagacagttgtgcaagtactttactacgagcagcaacgtcttcacaatgggagccagcttgtagcaactgaacctcctgctcttgtttcttccaaaagggatgatcagttctctactaaccctgtttcagacgaggtctcgagtctaaaacgagaaaatcaggagctgaaatttgagctgctgaaaatgaagacgaggttgatagaaattgaaaaaccaaagtcaaatacatcagcctcaagcagccctttggtcattactcagccatctgctggtaaacctcctttgccaagaaaatctaacttcatgagctcagtatcgaaaaagctcggaagatttattcgagcggatggactcacgcatggcaaagcccgaaataaaccaagtaaagatagacgtcattccatatcgtgatttcagctagctatatttccattattgtcaaaatatggtacatattggaatttttcaatttaatcatgcaagtttgtatggtaaagtatatattttttcgtgctttatccagaaatattatttatgaaagattgtaatatttgatttctcttatataccatgaaaaaatatttgcaattaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="39509" stop="37133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39209" g_stop="39146" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39145" i_stop="38140" i_length="1006">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38139" g_stop="37428" g_length="712"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="776" r_length="712" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E370336" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>776</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370336" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39209" e_stop="39146"/>
          <exon e_start="38139" e_stop="37428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCCCAGAGCAAGCAAGGATCACTGAAGATGGGATGTACAGGGCCATTGACATTTATTTGAAGGTATGTGCGAATAACATAACCTGATTAGTTTTAAGTTCATTTTTTTATATTTACGCATACAAGCAGCATTTCATCAATTTAGGATTACAGGCCATGTTTAGTAATGGGAAAAAACTATTGGTCCTGACTGCTACATTGTAATTGCCACGCTTAAATTTTATAATTTCCTTACAATTTACCTCCTGGTGCTAGCATGATAGTCTCCCTTTATTAGAGGTATGCATCTGGACCTCTGAAGCTTCTGATGTTCTATTAGACTATGTAAAGGGATATTTATATCATTCCGTGTTCTCTGATCACGGGAGTTATGTGCCTAATTCAGACTGAAATGCTTTTTGGGAATAAACATAATTTGGCATGCTTATACATAATGAGTTTAAGTTCGATGCATCCTAACCTTTACACTCAATACCATGTATATAAGCATGGTATATAAGAATTTGACATGCCTATATTCTTGAGTATTCTCAAAAAAAAAAAAATAGTCTCGGTTCTACGCACTGACAGATGTTATGAAACTTAAATCCATACATGTATTTCATATTGGGTTTCTCCTCCTAAAGAAGAAGCTCGTATATGTGTTCATAGATGTGCAACTTGCACCCCCCTGCTGTTACTTTTTCTAAAGATGAGGGTAGAATCAATAGTTTGTCAGAGTAGAAGCTCCAAATCCTATATTTGCTGAGTTACATAATAACAAGATAGAAACCATGTACCCCATTTGTTGATCTTCACCTATCATGTCGTCAGTTCTATATTCTTGAGTAATGAGTTGAACTTGATCAGAAAGTCTAAGCTTTTCAATCGCTGATTAAAAAGCGTGGAAACCTTGATTTAAAGCTAACATGATCTTATTGTTGAATTGTGTTATTATCTTAATTCTTTAGTAAAAGCTTGGACTACTAGAGATTACATGAGCACAGTTTTATTTGCTTAATTATGTCTTCAACGCATCAATTAAACTATGGAAGTGTGTTTAATATGTTATTGTTGTTGCAATTTGAAGGCACATCCAGCTCTAAGCGACATAGAAAGAAAAAAGGTTTGTGGTATTATGGACTGTCAAAAACTATCTCGAGAAGCTTGTGCTCATGCTGCTCAAAATGATAGGCTCCCTGTTCAGACAGTTGTGCAAGTACTTTACTACGAGCAGCAACGTCTTCACAATGGGAGCCAGCTTGTAGCAACTGAACCTCCTGCTCTTGTTTCTTCCAAAAGGGATGATCAGTTCTCTACTAACCCTGTTTCAGACGAGGTCTCGAGTCTAAAACGAGAAAATCAGGAGCTGAAATTTGAGCTGCTGAAAATGAAGACGAGGTTGATAGAAATTGAAAAACCAAAGTCAAATACATCAGCCTCAAGCAGCCCTTTGGTCATTACTCAGCCATCTGCTGGTAAACCTCCTTTGCCAAGAAAATCTAACTTCATGAGCTCAGTATCGAAAAAGCTCGGAAGATTTATTCGAGCGGATGGACTCACGCATGGCAAAGCCCGAAATAAACCAAGTAAAGATAGACGTCATTCCATATCGTGATTTCAGCTAGCTATATTTCCATTATTGTCAAAATATGGTACATATTGGAATTTTTCAATTTAATCATGCAAGTTTGTATGGTAAAGTATATATTTTTTCGTGCTTTATCCAGAAATATTATTTATGAAAGATTGTAATATTTGATTTCTCTTATATACCATGAAAAAATATTTGCAATTCTGAC</genome_strand>
        <mrna_strand>CATCCCAGAGCAAGCAAGGATCACTGAAGATGGGATGTACAGGGCCATTGACATTTATTTGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACATCCAGCTCTAAGCGACATAGAAAGAAAAAAGGTTTGTGGTATTATGGACTGTCAAAAACTATCTCGAGAAGCTTGTGCTCATGCTGCTCAAAATGATAGGCTCCCTGTTCAGACAGTTGTGCAAGTACTTTACTACGAGCAGCAACGTCTTCACAATGGGAGCCAGCTTGTAGCAACTGAACCTCCTGCTCTTGTTTCTTCCAAAAGGGATGATCAGTTCTCTACTAACCCTGTTTCAGACGAGGTCTCGAGTCTAAAACGAGAAAATCAGGAGCTGAAATTTGAGCTGCTGAAAATGAAGACGAGGTTGATAGAAATTGAAAAACCAAAGTCAAATACATCAGCCTCAAGCAGCCCTTTGGTCATTACTCAGCCATCTGCTGGTAAACCTCCTTTGCCAAGAAAATCTAACTTCATGAGCTCAGTATCGAAAAAGCTCGGAAGATTTATTCGAGCGGATGGACTCACGCATGGCAAAGCCCGAAATAAACCAAGTAAAGATAGACGTCATTCCATATCGTGATTTCAGCTAGCTATATTTCCATTATTGTCAAAATATGGTACATATTGGAATTTTTCAATTTAATCATGCAAGTTTGTATGGTAAAGTATATATTTTTTCGTGCTTTATCCAGAAATATTATTTATGAAAGATTGTAATATTTGATTTCTCTTATATACCATGAAAAAATATTTGCAATTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E613512" ref_strand="+" ref_description="SGN-E613512 [63288]">
      <seq>gttccttctaaaagggatcatcagttctctactaaccctgtttcagacgaggtctcgagtctaaaacgagaaaatcaggagctgaaatttgagctgctgaaaatgaagacgaggttgatagacattgaaaaaccaaatctaaacacatcagccacaagcagccctttggtcattactcatccatctgctggtaaacctcctttgccaagaaaatctaacttcatgagctcagtatcgaaaaagcttggaagatttattcgagcggatggactcatgcaaggcaaagcccgaaataaaccaagtaaagatagacgtcattccatatcgtgatttgagctagctatatttgcattattgtcttaatatggtacatattcgaattttttcatttaatcatgcaagtttgtatggtaaagtatatattttgtcgtgctttatccagaaatattatttatgaaagattgtaatatttgatttctctttataccatgaagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="38241" stop="37142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37941" g_stop="37437" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="504" r_length="504" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E613512" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E613512" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37941" e_stop="37437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCTTCCAAAAGGGATGATCAGTTCTCTACTAACCCTGTTTCAGACGAGGTCTCGAGTCTAAAACGAGAAAATCAGGAGCTGAAATTTGAGCTGCTGAAAATGAAGACGAGGTTGATAGAAATTGAAAAACCAAAGTCAAATACATCAGCCTCAAGCAGCCCTTTGGTCATTACTCAGCCATCTGCTGGTAAACCTCCTTTGCCAAGAAAATCTAACTTCATGAGCTCAGTATCGAAAAAGCTCGGAAGATTTATTCGAGCGGATGGACTCACGCATGGCAAAGCCCGAAATAAACCAAGTAAAGATAGACGTCATTCCATATCGTGATTTCAGCTAGCTATATTTCCATTATTGTCAAAATATGGTACATATTGGAATTTTTCAATTTAATCATGCAAGTTTGTATGGTAAAGTATATATTTTTTCGTGCTTTATCCAGAAATATTATTTATGAAAGATTGTAATATTTGATTTCTCTTATATACCATGAAAAAATATTTGC</genome_strand>
        <mrna_strand>GTTCCTTCTAAAAGGGATCATCAGTTCTCTACTAACCCTGTTTCAGACGAGGTCTCGAGTCTAAAACGAGAAAATCAGGAGCTGAAATTTGAGCTGCTGAAAATGAAGACGAGGTTGATAGACATTGAAAAACCAAATCTAAACACATCAGCCACAAGCAGCCCTTTGGTCATTACTCATCCATCTGCTGGTAAACCTCCTTTGCCAAGAAAATCTAACTTCATGAGCTCAGTATCGAAAAAGCTTGGAAGATTTATTCGAGCGGATGGACTCATGCAAGGCAAAGCCCGAAATAAACCAAGTAAAGATAGACGTCATTCCATATCGTGATTTGAGCTAGCTATATTTGCATTATTGTCTTAATATGGTACATATTCGAATTTTTTCATTTAATCATGCAAGTTTGTATGGTAAAGTATATATTTTGTCGTGCTTTATCCAGAAATATTATTTATGAAAGATTGTAATATTTGATTTCTCTT-TATACCATGAAGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E434160" ref_strand="+" ref_description="SGN-E434160 [STM-59-D23]">
      <seq>ccactacgagcagcaacgtcttcacgatgggagccagcttgtagcaactgaacctcctgctcttgttccttctaaaagggatcatcagttctctactaaccctgtttcagacgaggtctcgagtctaaaacgagaaaatcaggagctgaaatttgagctgctgaaaatgaagacgaggttgatagacattgaaaaaccaaatctaaacacatcagccacaagcagccctttggtcattactcatccatctgctggtaaacctcctttgccaagaaaatctaacttcatgagctcagtatcgaaaaagcttggaagatttattcgagcggatggactcatgcaaggcaaagcccgaaataaaccaagtaaagatagacgtcattccatatcgtgatttgagctagctatatttgcattattgtcttaatatggtacatattcgaattttttcatttaatcatgcaagtttgtatggtaaagtatatattttgtcgtgctttatccagaaatattatttatgaaagattgtaatatttgatttctctttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="38303" stop="37144"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38005" g_stop="37444" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="562" r_length="562" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E434160" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E434160" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38005" e_stop="37444"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTACGAGCAGCAACGTCTTCACAATGGGAGCCAGCTTGTAGCAACTGAACCTCCTGCTCTTGTTTCTTCCAAAAGGGATGATCAGTTCTCTACTAACCCTGTTTCAGACGAGGTCTCGAGTCTAAAACGAGAAAATCAGGAGCTGAAATTTGAGCTGCTGAAAATGAAGACGAGGTTGATAGAAATTGAAAAACCAAAGTCAAATACATCAGCCTCAAGCAGCCCTTTGGTCATTACTCAGCCATCTGCTGGTAAACCTCCTTTGCCAAGAAAATCTAACTTCATGAGCTCAGTATCGAAAAAGCTCGGAAGATTTATTCGAGCGGATGGACTCACGCATGGCAAAGCCCGAAATAAACCAAGTAAAGATAGACGTCATTCCATATCGTGATTTCAGCTAGCTATATTTCCATTATTGTCAAAATATGGTACATATTGGAATTTTTCAATTTAATCATGCAAGTTTGTATGGTAAAGTATATATTTTTTCGTGCTTTATCCAGAAATATTATTTATGAAAGATTGTAATATTTGATTTCTCTTATATACCATGAAAAAA</genome_strand>
        <mrna_strand>CCACTACGAGCAGCAACGTCTTCACGATGGGAGCCAGCTTGTAGCAACTGAACCTCCTGCTCTTGTTCCTTCTAAAAGGGATCATCAGTTCTCTACTAACCCTGTTTCAGACGAGGTCTCGAGTCTAAAACGAGAAAATCAGGAGCTGAAATTTGAGCTGCTGAAAATGAAGACGAGGTTGATAGACATTGAAAAACCAAATCTAAACACATCAGCCACAAGCAGCCCTTTGGTCATTACTCATCCATCTGCTGGTAAACCTCCTTTGCCAAGAAAATCTAACTTCATGAGCTCAGTATCGAAAAAGCTTGGAAGATTTATTCGAGCGGATGGACTCATGCAAGGCAAAGCCCGAAATAAACCAAGTAAAGATAGACGTCATTCCATATCGTGATTTGAGCTAGCTATATTTGCATTATTGTCTTAATATGGTACATATTCGAATTTTTTCATTTAATCATGCAAGTTTGTATGGTAAAGTATATATTTTGTCGTGCTTTATCCAGAAATATTATTTATGAAAGATTGTAATATTTGATTTCTCTTTAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E404752" ref_strand="+" ref_description="SGN-E404752 [PPC-15-M7]">
      <seq>ttactacgagcagcaacgtcttcacgatgggagccagcttgtagcaactgaacctcctgctcttgttccttctaaaagggatcatcagttctctactaaccctgtttcagacgaggtctcgagtctaaaacgagaaaatcaggagctgaaatttgagctgctgaaaatgaagacgaggttgatagacattgaaaaaccaaatctaaacacatcagccacaagcagccctttggtcattactcatccatctgctggtaaacctcctttgccaagaaaatctaacttcatgagctcagtatcgaaaaagcttggaagatttattcgagcggatggactcatgcaaggcaaagcccgaaataaaccaagtaaagatagacgtcattccatatcgtgatttgagctagctatatttgcattattgtcttaatatggtacatattcgaattttttcatttaatcatgcaagtttgtatggtaaagtatatattttgtcgtgctttatccagaaatattatttatgaaagattgtaatatttgatttctctttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="38305" stop="37144"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38005" g_stop="37444" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="561" r_length="561" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E404752" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E404752" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38005" e_stop="37444"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTACGAGCAGCAACGTCTTCACAATGGGAGCCAGCTTGTAGCAACTGAACCTCCTGCTCTTGTTTCTTCCAAAAGGGATGATCAGTTCTCTACTAACCCTGTTTCAGACGAGGTCTCGAGTCTAAAACGAGAAAATCAGGAGCTGAAATTTGAGCTGCTGAAAATGAAGACGAGGTTGATAGAAATTGAAAAACCAAAGTCAAATACATCAGCCTCAAGCAGCCCTTTGGTCATTACTCAGCCATCTGCTGGTAAACCTCCTTTGCCAAGAAAATCTAACTTCATGAGCTCAGTATCGAAAAAGCTCGGAAGATTTATTCGAGCGGATGGACTCACGCATGGCAAAGCCCGAAATAAACCAAGTAAAGATAGACGTCATTCCATATCGTGATTTCAGCTAGCTATATTTCCATTATTGTCAAAATATGGTACATATTGGAATTTTTCAATTTAATCATGCAAGTTTGTATGGTAAAGTATATATTTTTTCGTGCTTTATCCAGAAATATTATTTATGAAAGATTGTAATATTTGATTTCTCTTATATACCATGAAAAAA</genome_strand>
        <mrna_strand>TTACTACGAGCAGCAACGTCTTCACGATGGGAGCCAGCTTGTAGCAACTGAACCTCCTGCTCTTGTTCCTTCTAAAAGGGATCATCAGTTCTCTACTAACCCTGTTTCAGACGAGGTCTCGAGTCTAAAACGAGAAAATCAGGAGCTGAAATTTGAGCTGCTGAAAATGAAGACGAGGTTGATAGACATTGAAAAACCAAATCTAAACACATCAGCCACAAGCAGCCCTTTGGTCATTACTCATCCATCTGCTGGTAAACCTCCTTTGCCAAGAAAATCTAACTTCATGAGCTCAGTATCGAAAAAGCTTGGAAGATTTATTCGAGCGGATGGACTCATGCAAGGCAAAGCCCGAAATAAACCAAGTAAAGATAGACGTCATTCCATATCGTGATTTGAGCTAGCTATATTTGCATTATTGTCTTAATATGGTACATATTCGAATTTTTTCATTTAATCATGCAAGTTTGTATGGTAAAGTATATATTTTGTCGTGCTTTATCCAGAAATATTATTTATGAAAGATTGTAATATTTGATTTCTCTT-TAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E434161" ref_strand="+" ref_description="SGN-E434161 [STM-59-D23]">
      <seq>cattgggtacgggccccccctcgagttttnttgtccaaaaaggggttaaagagaaatcaatattcccaatctttcataaataatatttctggataaagcacgacaaaatatatactttaccatacaaacttgcatgattaaatgaaaaaattcgaatatgtaccatattaagacaataatgcaaatatagctagctcaaatcacgatatggaatgacgtctatctttacttggtttatttcgggctttgccttgcatgagtccatccgctcgaataaatcttccaagctttttcgatactgagctcatgaagttagattttcttggcaaaggaggtttaccagcagatggatgagtaatgaccaaagggctgcttgtggctgatgtgtttagatttggtttttcaatgtctatcaacctcgtcttcattttcagcagctcaaatttcagctcctgattttctcgttttagactcgagacctcgtctgaaacagggttagtagagaactgatgatcccttttagaaggaacaagagcaggaggttcagttgctacaagctggctcccatcgtgaagacgttgctgctcgtagtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="37153" stop="38305"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37463" g_stop="38005" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="594" r_length="543" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E434161" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E434161" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37463" e_stop="38005"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATCAAATATTACAATCTTTCATAAATAATATTTCTGGATAAAGCACGAAAAAATATATACTTTACCATACAAACTTGCATGATTAAATTGAAAAATTCCAATATGTACCATATTTTGACAATAATGGAAATATAGCTAGCTGAAATCACGATATGGAATGACGTCTATCTTTACTTGGTTTATTTCGGGCTTTGCCATGCGTGAGTCCATCCGCTCGAATAAATCTTCCGAGCTTTTTCGATACTGAGCTCATGAAGTTAGATTTTCTTGGCAAAGGAGGTTTACCAGCAGATGGCTGAGTAATGACCAAAGGGCTGCTTGAGGCTGATGTATTTGACTTTGGTTTTTCAATTTCTATCAACCTCGTCTTCATTTTCAGCAGCTCAAATTTCAGCTCCTGATTTTCTCGTTTTAGACTCGAGACCTCGTCTGAAACAGGGTTAGTAGAGAACTGATCATCCCTTTTGGAAGAAACAAGAGCAGGAGGTTCAGTTGCTACAAGCTGGCTCCCATTGTGAAGACGTTGCTGCTCGTAGTAA</genome_strand>
        <mrna_strand>AGAAATCAATATTCCCAATCTTTCATAAATAATATTTCTGGATAAAGCACGACAAAATATATACTTTACCATACAAACTTGCATGATTAAATGAAAAAATTCGAATATGTACCATATTAAGACAATAATGCAAATATAGCTAGCTCAAATCACGATATGGAATGACGTCTATCTTTACTTGGTTTATTTCGGGCTTTGCCTTGCATGAGTCCATCCGCTCGAATAAATCTTCCAAGCTTTTTCGATACTGAGCTCATGAAGTTAGATTTTCTTGGCAAAGGAGGTTTACCAGCAGATGGATGAGTAATGACCAAAGGGCTGCTTGTGGCTGATGTGTTTAGATTTGGTTTTTCAATGTCTATCAACCTCGTCTTCATTTTCAGCAGCTCAAATTTCAGCTCCTGATTTTCTCGTTTTAGACTCGAGACCTCGTCTGAAACAGGGTTAGTAGAGAACTGATGATCCCTTTTAGAAGGAACAAGAGCAGGAGGTTCAGTTGCTACAAGCTGGCTCCCATCGTGAAGACGTTGCTGCTCGTAGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E599952" ref_strand="+" ref_description="SGN-E599952 [52952]">
      <seq>caaaatatatactttaccatacaaacttgcatgattaaatgaaaaaattcgaatatgtaccatattaagacaataatgcaaatatagctagctcaaatcacgatatggaatgacgtctatctttacttggtttatttcgggctttgccttgcatgagtccatccgctcgaataaatcttccaagctttttcgatactgagctcatgaagttagattttcttggcaaaggaggtttaccagcagatggatgagtaatgaccaaagggctgcttgtggctgatgtgtttagatttggtttttcaatgtctatcaacctcgtcttcattttcagcagctcaaatttcagctcctgattttctcgttttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="37216" stop="38181"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37515" g_stop="37881" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E599952" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E599952" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37515" e_stop="37881"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATATATACTTTACCATACAAACTTGCATGATTAAATTGAAAAATTCCAATATGTACCATATTTTGACAATAATGGAAATATAGCTAGCTGAAATCACGATATGGAATGACGTCTATCTTTACTTGGTTTATTTCGGGCTTTGCCATGCGTGAGTCCATCCGCTCGAATAAATCTTCCGAGCTTTTTCGATACTGAGCTCATGAAGTTAGATTTTCTTGGCAAAGGAGGTTTACCAGCAGATGGCTGAGTAATGACCAAAGGGCTGCTTGAGGCTGATGTATTTGACTTTGGTTTTTCAATTTCTATCAACCTCGTCTTCATTTTCAGCAGCTCAAATTTCAGCTCCTGATTTTCTCGTTTTAG</genome_strand>
        <mrna_strand>CAAAATATATACTTTACCATACAAACTTGCATGATTAAATGAAAAAATTCGAATATGTACCATATTAAGACAATAATGCAAATATAGCTAGCTCAAATCACGATATGGAATGACGTCTATCTTTACTTGGTTTATTTCGGGCTTTGCCTTGCATGAGTCCATCCGCTCGAATAAATCTTCCAAGCTTTTTCGATACTGAGCTCATGAAGTTAGATTTTCTTGGCAAAGGAGGTTTACCAGCAGATGGATGAGTAATGACCAAAGGGCTGCTTGTGGCTGATGTGTTTAGATTTGGTTTTTCAATGTCTATCAACCTCGTCTTCATTTTCAGCAGCTCAAATTTCAGCTCCTGATTTTCTCGTTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E337431" ref_strand="+" ref_description="SGN-E337431 [cTOE-18-P11]">
      <seq>acaaacttcattaatcttgctgaagtcatcccagagcaagcaaggatcactgaagatgggatgtacagggccattgacatttatttgaaggcacatccagctctaagcgacatagaaagaaaaaaggtttgtgggattatggactgtcaaaaactatctcgagaagcttgtgctcatgctgctcaaaatgataggctccctggtcagacagttgagcaagtactttactaccagcagcaacggcttcacaatgggagccagcttgtagcaactgaacctcctgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="39535" stop="37644"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39235" g_stop="39146" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39145" i_stop="38140" i_length="1006">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38139" g_stop="37944" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="286" r_length="196" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E337431" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337431" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39235" e_stop="39146"/>
          <exon e_start="38139" e_stop="37944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAACTTCATTAATCTTGCTGAAGTCATCCCAGAGCAAGCAAGGATCACTGAAGATGGGATGTACAGGGCCATTGACATTTATTTGAAGGTATGTGCGAATAACATAACCTGATTAGTTTTAAGTTCATTTTTTTATATTTACGCATACAAGCAGCATTTCATCAATTTAGGATTACAGGCCATGTTTAGTAATGGGAAAAAACTATTGGTCCTGACTGCTACATTGTAATTGCCACGCTTAAATTTTATAATTTCCTTACAATTTACCTCCTGGTGCTAGCATGATAGTCTCCCTTTATTAGAGGTATGCATCTGGACCTCTGAAGCTTCTGATGTTCTATTAGACTATGTAAAGGGATATTTATATCATTCCGTGTTCTCTGATCACGGGAGTTATGTGCCTAATTCAGACTGAAATGCTTTTTGGGAATAAACATAATTTGGCATGCTTATACATAATGAGTTTAAGTTCGATGCATCCTAACCTTTACACTCAATACCATGTATATAAGCATGGTATATAAGAATTTGACATGCCTATATTCTTGAGTATTCTCAAAAAAAAAAAAATAGTCTCGGTTCTACGCACTGACAGATGTTATGAAACTTAAATCCATACATGTATTTCATATTGGGTTTCTCCTCCTAAAGAAGAAGCTCGTATATGTGTTCATAGATGTGCAACTTGCACCCCCCTGCTGTTACTTTTTCTAAAGATGAGGGTAGAATCAATAGTTTGTCAGAGTAGAAGCTCCAAATCCTATATTTGCTGAGTTACATAATAACAAGATAGAAACCATGTACCCCATTTGTTGATCTTCACCTATCATGTCGTCAGTTCTATATTCTTGAGTAATGAGTTGAACTTGATCAGAAAGTCTAAGCTTTTCAATCGCTGATTAAAAAGCGTGGAAACCTTGATTTAAAGCTAACATGATCTTATTGTTGAATTGTGTTATTATCTTAATTCTTTAGTAAAAGCTTGGACTACTAGAGATTACATGAGCACAGTTTTATTTGCTTAATTATGTCTTCAACGCATCAATTAAACTATGGAAGTGTGTTTAATATGTTATTGTTGTTGCAATTTGAAGGCACATCCAGCTCTAAGCGACATAGAAAGAAAAAAGGTTTGTGGTATTATGGACTGTCAAAAACTATCTCGAGAAGCTTGTGCTCATGCTGCTCAAAATGATAGGCTCCCTGTTCAGACAGTTGTGCAAGTACTTTACTACGAGCAGCAACGTCTTCACAATGGGAGCCAGCTTGTAGCAACTGAACCTCCTGCTC</genome_strand>
        <mrna_strand>ACAAACTTCATTAATCTTGCTGAAGTCATCCCAGAGCAAGCAAGGATCACTGAAGATGGGATGTACAGGGCCATTGACATTTATTTGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACATCCAGCTCTAAGCGACATAGAAAGAAAAAAGGTTTGTGGGATTATGGACTGTCAAAAACTATCTCGAGAAGCTTGTGCTCATGCTGCTCAAAATGATAGGCTCCCTGGTCAGACAGTTGAGCAAGTACTTTACTACCAGCAGCAACGGCTTCACAATGGGAGCCAGCTTGTAGCAACTGAACCTCCTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E263684" ref_strand="+" ref_description="SGN-E263684 [cLEG-60-C4]">
      <seq>cgatgatggcaaggggattcaagcggtatgcacttggaccaatattaatgctctacgcacagaagtctcttcgaggtttggaaatatttggaaagggaaggaaaaagattgaaccaaagcaagaacatgaaaaaagagttgttttagaaaccatcgttagtcttctgccaaaggagaaaaatgcattgtccgttagctttctgtcaatgctgctccgagctgcaatatatctggagaccacgatagcttgcaggcttgacctggagaagacgatggcattgcagcttggacaggctgtattggatgatctgttaattccttcaagttccttcacaggagacaccttgtatgatgttgaaaccgtgcagcgtattatgatgaatttccttgacaatgaggagggaaatcgattaagagatgaagagtatcatgtgtctccttcattaagagacatggagcgggatggaaaacttatggaaaattaccttgctgaaatagcctctgaccgtaatctgtctgtcacaaacttcattagtcttgctgaagtcatcccagagcaagcaaggatcactgaagatgggatgtacagggccattgacatttatttgaaggcacatccagctctaagcgacatagaaagaaaaaaggttgtggtattatggactgtcaaaaactatctcgagaagcttgtgctcatgctgctcaaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="40138" stop="37740"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39838" g_stop="39759" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39758" i_stop="39677" i_length="82">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39676" g_stop="39146" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="611" r_length="531" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39145" i_stop="38140" i_length="1006">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38139" g_stop="38040" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="710" r_length="99" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E263684" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E263684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39838" e_stop="39759"/>
          <exon e_start="39676" e_stop="39146"/>
          <exon e_start="38139" e_stop="38040"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATGATGGCAAGGGGATTCAAGCGGTATGCACTTGGACCAATATTAATGCTCTACGCACAGAAGTCTCTTCGAGGTTTGGTGAGGCCTTGTACTATAAAATCTTGATAAATTGGTTAAAATGAAATAATTATGCTTATAGTAGTTTTTTTGTTTATTACAGGAAATATTTGGAAAGGGAAGGAAAAAGATTGAACCAAAGCAAGAACATGAAAAAAGAGTTGTTTTAGAAACCATCGTTAGTCTTCTGCCAAAGGAGAAAAATGCATTGTCCGTTAGCTTTCTGTCAATGCTGCTCCGAGCTGCAATATATCTGGAGACCACGATAGCTTGCAGGCTTGACCTGGAGAAGAGGATGGCATTGCAGCTTGGACAGGCTGTATTGGATGATCTGTTAATTCCTTCAAGTTCCTTCACAGGAGACACCTTGTATGATGTTGAAACCGTGCAGCGTATTATGATGAATTTCCTTGACAATGAGGAGGGAAATCGATTAGGAGATGAAGAGTATCATGTGTCTCCTTCATTAAGTGACATGGAGCGGGTTGGAAAACTTATGGAAAATTACCTTGCTGAAATAGCCTCTGACCGTAATCTGTCTGTCACAAACTTCATTAATCTTGCTGAAGTCATCCCAGAGCAAGCAAGGATCACTGAAGATGGGATGTACAGGGCCATTGACATTTATTTGAAGGTATGTGCGAATAACATAACCTGATTAGTTTTAAGTTCATTTTTTTATATTTACGCATACAAGCAGCATTTCATCAATTTAGGATTACAGGCCATGTTTAGTAATGGGAAAAAACTATTGGTCCTGACTGCTACATTGTAATTGCCACGCTTAAATTTTATAATTTCCTTACAATTTACCTCCTGGTGCTAGCATGATAGTCTCCCTTTATTAGAGGTATGCATCTGGACCTCTGAAGCTTCTGATGTTCTATTAGACTATGTAAAGGGATATTTATATCATTCCGTGTTCTCTGATCACGGGAGTTATGTGCCTAATTCAGACTGAAATGCTTTTTGGGAATAAACATAATTTGGCATGCTTATACATAATGAGTTTAAGTTCGATGCATCCTAACCTTTACACTCAATACCATGTATATAAGCATGGTATATAAGAATTTGACATGCCTATATTCTTGAGTATTCTCAAAAAAAAAAAAATAGTCTCGGTTCTACGCACTGACAGATGTTATGAAACTTAAATCCATACATGTATTTCATATTGGGTTTCTCCTCCTAAAGAAGAAGCTCGTATATGTGTTCATAGATGTGCAACTTGCACCCCCCTGCTGTTACTTTTTCTAAAGATGAGGGTAGAATCAATAGTTTGTCAGAGTAGAAGCTCCAAATCCTATATTTGCTGAGTTACATAATAACAAGATAGAAACCATGTACCCCATTTGTTGATCTTCACCTATCATGTCGTCAGTTCTATATTCTTGAGTAATGAGTTGAACTTGATCAGAAAGTCTAAGCTTTTCAATCGCTGATTAAAAAGCGTGGAAACCTTGATTTAAAGCTAACATGATCTTATTGTTGAATTGTGTTATTATCTTAATTCTTTAGTAAAAGCTTGGACTACTAGAGATTACATGAGCACAGTTTTATTTGCTTAATTATGTCTTCAACGCATCAATTAAACTATGGAAGTGTGTTTAATATGTTATTGTTGTTGCAATTTGAAGGCACATCCAGCTCTAAGCGACATAGAAAGAAAAAAGGTTTGTGGTATTATGGACTGTCAAAAACTATCTCGAGAAGCTTGTGCTCATGCTGCTCAAAATG</genome_strand>
        <mrna_strand>CGATGATGGCAAGGGGATTCAAGCGGTATGCACTTGGACCAATATTAATGCTCTACGCACAGAAGTCTCTTCGAGGTTTG..................................................................................GAAATATTTGGAAAGGGAAGGAAAAAGATTGAACCAAAGCAAGAACATGAAAAAAGAGTTGTTTTAGAAACCATCGTTAGTCTTCTGCCAAAGGAGAAAAATGCATTGTCCGTTAGCTTTCTGTCAATGCTGCTCCGAGCTGCAATATATCTGGAGACCACGATAGCTTGCAGGCTTGACCTGGAGAAGACGATGGCATTGCAGCTTGGACAGGCTGTATTGGATGATCTGTTAATTCCTTCAAGTTCCTTCACAGGAGACACCTTGTATGATGTTGAAACCGTGCAGCGTATTATGATGAATTTCCTTGACAATGAGGAGGGAAATCGATTAAGAGATGAAGAGTATCATGTGTCTCCTTCATTAAGAGACATGGAGCGGGATGGAAAACTTATGGAAAATTACCTTGCTGAAATAGCCTCTGACCGTAATCTGTCTGTCACAAACTTCATTAGTCTTGCTGAAGTCATCCCAGAGCAAGCAAGGATCACTGAAGATGGGATGTACAGGGCCATTGACATTTATTTGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACATCCAGCTCTAAGCGACATAGAAAGAAAAAAGG-TTGTGGTATTATGGACTGTCAAAAACTATCTCGAGAAGCTTGTGCTCATGCTGCTCAAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E330004" ref_strand="+" ref_description="SGN-E330004 [cTOD-5-F22]">
      <seq>gggagaagaggatggcattgcatcggggacaggctggattggatgatctgctaattccttcaagttccttcacaggagacaccttgtatgatgttgaaaccgtgcagcgtattatgatgaatttccttgacaatgaggagggaaatccattacgagatgaagagtatcatgtgtctccttcattaagtgacatggagcgggttggaaaacttatggaaaattaccttgctgaaatagcctctgaccgtaatctgtgtgtcacaaacttcattaatcttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="39794" stop="38915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39495" g_stop="39215" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E330004" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>281</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39495" e_stop="39215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGAAGAGGATGGCATTGCAGCTTGGACAGGCTGTATTGGATGATCTGTTAATTCCTTCAAGTTCCTTCACAGGAGACACCTTGTATGATGTTGAAACCGTGCAGCGTATTATGATGAATTTCCTTGACAATGAGGAGGGAAATCGATTAGGAGATGAAGAGTATCATGTGTCTCCTTCATTAAGTGACATGGAGCGGGTTGGAAAACTTATGGAAAATTACCTTGCTGAAATAGCCTCTGACCGTAATCTGTCTGTCACAAACTTCATTAATCTTGCT</genome_strand>
        <mrna_strand>GGGAGAAGAGGATGGCATTGCATCGGGGACAGGCTGGATTGGATGATCTGCTAATTCCTTCAAGTTCCTTCACAGGAGACACCTTGTATGATGTTGAAACCGTGCAGCGTATTATGATGAATTTCCTTGACAATGAGGAGGGAAATCCATTACGAGATGAAGAGTATCATGTGTCTCCTTCATTAAGTGACATGGAGCGGGTTGGAAAACTTATGGAAAATTACCTTGCTGAAATAGCCTCTGACCGTAATCTGTGTGTCACAAACTTCATTAATCTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E479643" ref_strand="+" ref_description="SGN-E479643 [cSTD-10-D18]">
      <seq>gttaacaataatatgtccactaaaaaggaggagcttctttcctctgctatgaagaggacctctgactggattttctcccaagagattcccagtgatgtaactgtaaatgcaggaggaacctcctttgcactgcacaagttcccattggtttcaaagagtggatacataagaaagttggtctcagaatctaatgacgctgatgtttctacgattaatatccctgatatacctggtggaggagaggcatttgaacttgcagcaaagttttgttatggaataaattttgaaataagcacagaaaacattgccttgctgagatgcgcggcggaatatcttgagatgacagaagactatgcagttgcaaatttggtggaaagaactgaggcctactttaatgaagtagcaattaagagtcttgctggtgcagttacaattttgcgttcatcagaaaatcttcttcccattgcagagaaagtaaaattggtgagccgatgcatagacacaattgcatatacagcctgcaaggataaccaattctccacatcaggtagagcagaagctggtatcaacggatccacgttttcaaacccgaagcctatagtttgactggtggtctgaagatataaccgtacttagaattgattttttccaaagggttctgattgcaatgatggcaaggggattcaagcggtatgcacttggaccaatattaatgctcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="41197" stop="39484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40897" g_stop="40830" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40829" i_stop="40740" i_length="90">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40739" g_stop="40670" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="138" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40669" i_stop="40365" i_length="305">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.840" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40364" g_stop="39784" g_length="581"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="720" r_length="582" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E479643" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E479643" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40897" e_stop="40830"/>
          <exon e_start="40739" e_stop="40670"/>
          <exon e_start="40364" e_stop="39784"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAACAATAATATGACCACTAAAAAGGATGAGCTTCTATTCTCTGCTATGAAGAGGACCTCTGACTGGTATGTTCTTTTCTCATTTTTTTAAATCTTCTGCTTTCTAGAAGTAATCTATCTCTTTATTATATTCTTCTATTATAATAATCTTAACAGGATTTTCTCCCAAGAGATTCCCAGTGATGTAACTGTAAATGCAGGAGGAACCTCCTTTACACTGCACAAGGTGAGTTGTTCTATCTGTGCCTTTGTCATAACTAATCCCTGCACACAATCAAAAAAATTGTTGTTGGTTTAATTACTAAAATTCCTAATTGGATTGAAATTATCGACCTTAGTCACATCTCAGTGTAATTATAACAACAAATTCAGTGTAATCGGGGTCGGGGGAGGGGTTATGTAGACTTACCCTAACTTTTAGGGATAGAGAGGTCCTCGCCAATATGAACGAGCTCACACAGGTCGAGTTAAGGCCTTAGTCATGATGATTGATAAGTAGGATCAATAATGTATCAGTTGTGATCCTTGCAGTTCCCATTAGTTTCAAAGAGTGGATACATAAGAAAGTTGATCTCAGAATCTAATGAGGCTGATGTTTCTACTATCGATATCCCTGATATACCTGGTGGAGGAGAGGCATTTGAACTTGCAGCAAAGTTTTGTTATGGAATAAATTTTGAGATTAGCACAGAAAACATTGCCTTGCTGAGATGCGTGGCGGAATATCTTGAGATGACAGAAGACTATGCAGTTGCAAATTTGGTGGAAAGAACTGAGGCCTACTTTAATGAAGTAGCAATTACGAGTCTTGCGGGTGCAGTTACAATTTTGCGTTCATCAGAAAACCTTCTTCCCATTGCAGAGAAAGTAAAATTGGTGAGCCGATGCATAGACACAATTGCATATACAGCCTGCAAGGATAACCAATTCTCCACATCAGGTAGAGCAGAAGCTGGTATCAACGGATCCACGTTTTCAAACCCGAAGCCTATAG-TTGACTGGTGGTCTGAAGATATAACCGTCCTTAGAATTGATTTTTTCCAAAGGGTTCTGATTGCGATGATGGCAAGGGGATTCAAGCGGTATGCACTTGGACCAATATTAATGCTCTA</genome_strand>
        <mrna_strand>GTTAACAATAATATGTCCACTAAAAAGGAGGAGCTTCTTTCCTCTGCTATGAAGAGGACCTCTGACTG..........................................................................................GATTTTCTCCCAAGAGATTCCCAGTGATGTAACTGTAAATGCAGGAGGAACCTCCTTTGCACTGCACAAG.................................................................................................................................................................................................................................................................................................................TTCCCATTGGTTTCAAAGAGTGGATACATAAGAAAGTTGGTCTCAGAATCTAATGACGCTGATGTTTCTACGATTAATATCCCTGATATACCTGGTGGAGGAGAGGCATTTGAACTTGCAGCAAAGTTTTGTTATGGAATAAATTTTGAAATAAGCACAGAAAACATTGCCTTGCTGAGATGCGCGGCGGAATATCTTGAGATGACAGAAGACTATGCAGTTGCAAATTTGGTGGAAAGAACTGAGGCCTACTTTAATGAAGTAGCAATTAAGAGTCTTGCTGGTGCAGTTACAATTTTGCGTTCATCAGAAAATCTTCTTCCCATTGCAGAGAAAGTAAAATTGGTGAGCCGATGCATAGACACAATTGCATATACAGCCTGCAAGGATAACCAATTCTCCACATCAGGTAGAGCAGAAGCTGGTATCAACGGATCCACGTTTTCAAACCCGAAGCCTATAGTTTGACTGGTGGTCTGAAGATATAACCGTACTTAGAATTGATTTTTTCCAAAGGGTTCTGATTGCAATGATGGCAAGGGGATTCAAGCGGTATGCACTTGGACCAATATTAATGCTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E370337" ref_strand="+" ref_description="SGN-E370337 [TUS-28-A9]">
      <seq>aataatatgaccactaaaaaggatgagcttctattctctgctatgaagaggacctctgactggattttctcccaagagattcccagtgatgtaactgtaaatgcaggaggaacctcctttacactgcacaagttcccattagtttcaaagagtggatacataagaaagttgatctcagaatctaatgaggctgatgtttctactatcgatatccctgatatacctggtggaggagaggcatttgaacttgcagcaaagttttgttatggaataaattttgagattagcacagaaaacattgccttgctgagatgcgtggcggaatatcttgagatgacagaagactatgcagttgcaaatttggtggaaagaactgaggcctactttaatgaagtagcaattacgagtcttgcgggtgcagttacaattttgcgttcatcagaaaaccttcttcccattgcagagaaagtaaaattggtgagccgatgcatagacacaattgcatatacagcctgcaaggataaccaattctccacatcaggtagagcagaagctggtatcaacggatccacgttttcaaacccgaagcctatagttgactggtggtctgaagatataaccgtccttagaattgattttttccaaagggttctgattgcgatgatggcanggggattcaagcggtatgcacttggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="41191" stop="39500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40891" g_stop="40830" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40829" i_stop="40740" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40739" g_stop="40670" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="132" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40669" i_stop="40365" i_length="305">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40364" g_stop="39800" g_length="565"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="697" r_length="565" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E370337" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370337" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40891" e_stop="40830"/>
          <exon e_start="40739" e_stop="40670"/>
          <exon e_start="40364" e_stop="39800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAATATGACCACTAAAAAGGATGAGCTTCTATTCTCTGCTATGAAGAGGACCTCTGACTGGTATGTTCTTTTCTCATTTTTTTAAATCTTCTGCTTTCTAGAAGTAATCTATCTCTTTATTATATTCTTCTATTATAATAATCTTAACAGGATTTTCTCCCAAGAGATTCCCAGTGATGTAACTGTAAATGCAGGAGGAACCTCCTTTACACTGCACAAGGTGAGTTGTTCTATCTGTGCCTTTGTCATAACTAATCCCTGCACACAATCAAAAAAATTGTTGTTGGTTTAATTACTAAAATTCCTAATTGGATTGAAATTATCGACCTTAGTCACATCTCAGTGTAATTATAACAACAAATTCAGTGTAATCGGGGTCGGGGGAGGGGTTATGTAGACTTACCCTAACTTTTAGGGATAGAGAGGTCCTCGCCAATATGAACGAGCTCACACAGGTCGAGTTAAGGCCTTAGTCATGATGATTGATAAGTAGGATCAATAATGTATCAGTTGTGATCCTTGCAGTTCCCATTAGTTTCAAAGAGTGGATACATAAGAAAGTTGATCTCAGAATCTAATGAGGCTGATGTTTCTACTATCGATATCCCTGATATACCTGGTGGAGGAGAGGCATTTGAACTTGCAGCAAAGTTTTGTTATGGAATAAATTTTGAGATTAGCACAGAAAACATTGCCTTGCTGAGATGCGTGGCGGAATATCTTGAGATGACAGAAGACTATGCAGTTGCAAATTTGGTGGAAAGAACTGAGGCCTACTTTAATGAAGTAGCAATTACGAGTCTTGCGGGTGCAGTTACAATTTTGCGTTCATCAGAAAACCTTCTTCCCATTGCAGAGAAAGTAAAATTGGTGAGCCGATGCATAGACACAATTGCATATACAGCCTGCAAGGATAACCAATTCTCCACATCAGGTAGAGCAGAAGCTGGTATCAACGGATCCACGTTTTCAAACCCGAAGCCTATAGTTGACTGGTGGTCTGAAGATATAACCGTCCTTAGAATTGATTTTTTCCAAAGGGTTCTGATTGCGATGATGGCAAGGGGATTCAAGCGGTATGCACTTGGAC</genome_strand>
        <mrna_strand>AATAATATGACCACTAAAAAGGATGAGCTTCTATTCTCTGCTATGAAGAGGACCTCTGACTG..........................................................................................GATTTTCTCCCAAGAGATTCCCAGTGATGTAACTGTAAATGCAGGAGGAACCTCCTTTACACTGCACAAG.................................................................................................................................................................................................................................................................................................................TTCCCATTAGTTTCAAAGAGTGGATACATAAGAAAGTTGATCTCAGAATCTAATGAGGCTGATGTTTCTACTATCGATATCCCTGATATACCTGGTGGAGGAGAGGCATTTGAACTTGCAGCAAAGTTTTGTTATGGAATAAATTTTGAGATTAGCACAGAAAACATTGCCTTGCTGAGATGCGTGGCGGAATATCTTGAGATGACAGAAGACTATGCAGTTGCAAATTTGGTGGAAAGAACTGAGGCCTACTTTAATGAAGTAGCAATTACGAGTCTTGCGGGTGCAGTTACAATTTTGCGTTCATCAGAAAACCTTCTTCCCATTGCAGAGAAAGTAAAATTGGTGAGCCGATGCATAGACACAATTGCATATACAGCCTGCAAGGATAACCAATTCTCCACATCAGGTAGAGCAGAAGCTGGTATCAACGGATCCACGTTTTCAAACCCGAAGCCTATAGTTGACTGGTGGTCTGAAGATATAACCGTCCTTAGAATTGATTTTTTCCAAAGGGTTCTGATTGCGATGATGGCANGGGGATTCAAGCGGTATGCACTTGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E329362" ref_strand="+" ref_description="SGN-E329362 [cTOD-2-K5]">
      <seq>gagctcacacaggtcgagttaaggccttagtcatgatgattgataagtaggatcaataatgtatcagttgtgatccttgcagttcccattagtttcaaagagtggatacataagaaagttgatctcagaatctaatgaggctgatgtttctactatcgatatccctgatatacctggtggaggagaggcatttgaacttgcagcaaagttttgttatggaataaattttgagattagcacagaaaacattgccttgctgagatgcgtggcggaatatcttgagatgacagaagactatgcagttgcaaatttggtggaaagaactgaggcctactttaatgaagtagcaattacgagtcttgcgggtgcagttacaattttgcgttcatcagaaaaccttcttcccattgcagagaaagtaaaattggtgagccgatgcatagacacaattgcatatacagcctgcaaggataaccaattctccacatcaggtagagcagaagctggtatcaacggatccacgttttcaaacccgaagcctatagttgactggtggtctgaagatataaccgtccttagaattgattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="40746" stop="39557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40446" g_stop="39857" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="590" r_length="590" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E329362" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40446" e_stop="39857"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTCACACAGGTCGAGTTAAGGCCTTAGTCATGATGATTGATAAGTAGGATCAATAATGTATCAGTTGTGATCCTTGCAGTTCCCATTAGTTTCAAAGAGTGGATACATAAGAAAGTTGATCTCAGAATCTAATGAGGCTGATGTTTCTACTATCGATATCCCTGATATACCTGGTGGAGGAGAGGCATTTGAACTTGCAGCAAAGTTTTGTTATGGAATAAATTTTGAGATTAGCACAGAAAACATTGCCTTGCTGAGATGCGTGGCGGAATATCTTGAGATGACAGAAGACTATGCAGTTGCAAATTTGGTGGAAAGAACTGAGGCCTACTTTAATGAAGTAGCAATTACGAGTCTTGCGGGTGCAGTTACAATTTTGCGTTCATCAGAAAACCTTCTTCCCATTGCAGAGAAAGTAAAATTGGTGAGCCGATGCATAGACACAATTGCATATACAGCCTGCAAGGATAACCAATTCTCCACATCAGGTAGAGCAGAAGCTGGTATCAACGGATCCACGTTTTCAAACCCGAAGCCTATAGTTGACTGGTGGTCTGAAGATATAACCGTCCTTAGAATTGATTTTT</genome_strand>
        <mrna_strand>GAGCTCACACAGGTCGAGTTAAGGCCTTAGTCATGATGATTGATAAGTAGGATCAATAATGTATCAGTTGTGATCCTTGCAGTTCCCATTAGTTTCAAAGAGTGGATACATAAGAAAGTTGATCTCAGAATCTAATGAGGCTGATGTTTCTACTATCGATATCCCTGATATACCTGGTGGAGGAGAGGCATTTGAACTTGCAGCAAAGTTTTGTTATGGAATAAATTTTGAGATTAGCACAGAAAACATTGCCTTGCTGAGATGCGTGGCGGAATATCTTGAGATGACAGAAGACTATGCAGTTGCAAATTTGGTGGAAAGAACTGAGGCCTACTTTAATGAAGTAGCAATTACGAGTCTTGCGGGTGCAGTTACAATTTTGCGTTCATCAGAAAACCTTCTTCCCATTGCAGAGAAAGTAAAATTGGTGAGCCGATGCATAGACACAATTGCATATACAGCCTGCAAGGATAACCAATTCTCCACATCAGGTAGAGCAGAAGCTGGTATCAACGGATCCACGTTTTCAAACCCGAAGCCTATAGTTGACTGGTGGTCTGAAGATATAACCGTCCTTAGAATTGATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E295195" ref_strand="+" ref_description="SGN-E295195 [cLET-20-P23]">
      <seq>gcatttgaacttgcagcaaagttttgttatggaataaattttgagattagcacagaaaacattgccttgctgagatgcgtggcggaatatcttgagatgacagaagactatgcagttgcaaatttggtggaaagaactgaggcctactttaatgaagtagcaattacgagtcttgcgggtgcagttacaattttgcgttcatcagaaaaccttcttcccattgcagagaaagtaaaattggtgagccgatgcatagacacaattgcatatacagcctgcaaggataaccaattctccacatcaggtagagcagaagctggtatcaacggatccacgttttcaaacccgaagcctatagttgactggtggtctgaagatataaccgtccttagaattgattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="40559" stop="39557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40259" g_stop="39857" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="403" r_length="403" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E295195" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295195" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40259" e_stop="39857"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTTGAACTTGCAGCAAAGTTTTGTTATGGAATAAATTTTGAGATTAGCACAGAAAACATTGCCTTGCTGAGATGCGTGGCGGAATATCTTGAGATGACAGAAGACTATGCAGTTGCAAATTTGGTGGAAAGAACTGAGGCCTACTTTAATGAAGTAGCAATTACGAGTCTTGCGGGTGCAGTTACAATTTTGCGTTCATCAGAAAACCTTCTTCCCATTGCAGAGAAAGTAAAATTGGTGAGCCGATGCATAGACACAATTGCATATACAGCCTGCAAGGATAACCAATTCTCCACATCAGGTAGAGCAGAAGCTGGTATCAACGGATCCACGTTTTCAAACCCGAAGCCTATAGTTGACTGGTGGTCTGAAGATATAACCGTCCTTAGAATTGATTTTT</genome_strand>
        <mrna_strand>GCATTTGAACTTGCAGCAAAGTTTTGTTATGGAATAAATTTTGAGATTAGCACAGAAAACATTGCCTTGCTGAGATGCGTGGCGGAATATCTTGAGATGACAGAAGACTATGCAGTTGCAAATTTGGTGGAAAGAACTGAGGCCTACTTTAATGAAGTAGCAATTACGAGTCTTGCGGGTGCAGTTACAATTTTGCGTTCATCAGAAAACCTTCTTCCCATTGCAGAGAAAGTAAAATTGGTGAGCCGATGCATAGACACAATTGCATATACAGCCTGCAAGGATAACCAATTCTCCACATCAGGTAGAGCAGAAGCTGGTATCAACGGATCCACGTTTTCAAACCCGAAGCCTATAGTTGACTGGTGGTCTGAAGATATAACCGTCCTTAGAATTGATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E481722" ref_strand="+" ref_description="SGN-E481722 [cSTD-19-C18]">
      <seq>ctactgttaacaataatatgtccactaaaaaggaggagcttctttcctctgctatgaagaggacctctgactggattttctcccaagagattcccagtgatgtaactgtaaatgcaggaggaacctcctttgcactgcacaagttcccattggtttcaaagagtggatacataagaaagttggtctcagaatctaatgacgctgatgtttctacgattaatatccctgatatacctggtggaggagaggcatttgaacttgcagcaaagttttgttatggaataaattttgaaataagcacagaaaacattgccttgctgagatgcgcggcggaatatcttgagatgacagaagactatgcagttgcaaatttggtggaaagaactgaggcctactttaatgaagtagcaattaagagtcttgctggtgcagttacaattttgcgttcatcagaaaatcttcttcccattgcagagaaagtaaaattggtgagccgatgcatagacacaattgcatatacagcctgcaaggataaccaattctccacatcangtagagcagaagctggtatcaacggatccacgttttcaaacccgaagcctatagttgactggtggtctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="41202" stop="39587"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40902" g_stop="40830" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40829" i_stop="40740" i_length="90">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40739" g_stop="40670" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="143" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40669" i_stop="40365" i_length="305">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.840" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40364" g_stop="39887" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="621" r_length="478" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E481722" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E481722" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40902" e_stop="40830"/>
          <exon e_start="40739" e_stop="40670"/>
          <exon e_start="40364" e_stop="39887"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACTGTTAACAATAATATGACCACTAAAAAGGATGAGCTTCTATTCTCTGCTATGAAGAGGACCTCTGACTGGTATGTTCTTTTCTCATTTTTTTAAATCTTCTGCTTTCTAGAAGTAATCTATCTCTTTATTATATTCTTCTATTATAATAATCTTAACAGGATTTTCTCCCAAGAGATTCCCAGTGATGTAACTGTAAATGCAGGAGGAACCTCCTTTACACTGCACAAGGTGAGTTGTTCTATCTGTGCCTTTGTCATAACTAATCCCTGCACACAATCAAAAAAATTGTTGTTGGTTTAATTACTAAAATTCCTAATTGGATTGAAATTATCGACCTTAGTCACATCTCAGTGTAATTATAACAACAAATTCAGTGTAATCGGGGTCGGGGGAGGGGTTATGTAGACTTACCCTAACTTTTAGGGATAGAGAGGTCCTCGCCAATATGAACGAGCTCACACAGGTCGAGTTAAGGCCTTAGTCATGATGATTGATAAGTAGGATCAATAATGTATCAGTTGTGATCCTTGCAGTTCCCATTAGTTTCAAAGAGTGGATACATAAGAAAGTTGATCTCAGAATCTAATGAGGCTGATGTTTCTACTATCGATATCCCTGATATACCTGGTGGAGGAGAGGCATTTGAACTTGCAGCAAAGTTTTGTTATGGAATAAATTTTGAGATTAGCACAGAAAACATTGCCTTGCTGAGATGCGTGGCGGAATATCTTGAGATGACAGAAGACTATGCAGTTGCAAATTTGGTGGAAAGAACTGAGGCCTACTTTAATGAAGTAGCAATTACGAGTCTTGCGGGTGCAGTTACAATTTTGCGTTCATCAGAAAACCTTCTTCCCATTGCAGAGAAAGTAAAATTGGTGAGCCGATGCATAGACACAATTGCATATACAGCCTGCAAGGATAACCAATTCTCCACATCAGGTAGAGCAGAAGCTGGTATCAACGGATCCACGTTTTCAAACCCGAAGCCTATAGTTGACTGGTGGTCTG</genome_strand>
        <mrna_strand>CTACTGTTAACAATAATATGTCCACTAAAAAGGAGGAGCTTCTTTCCTCTGCTATGAAGAGGACCTCTGACTG..........................................................................................GATTTTCTCCCAAGAGATTCCCAGTGATGTAACTGTAAATGCAGGAGGAACCTCCTTTGCACTGCACAAG.................................................................................................................................................................................................................................................................................................................TTCCCATTGGTTTCAAAGAGTGGATACATAAGAAAGTTGGTCTCAGAATCTAATGACGCTGATGTTTCTACGATTAATATCCCTGATATACCTGGTGGAGGAGAGGCATTTGAACTTGCAGCAAAGTTTTGTTATGGAATAAATTTTGAAATAAGCACAGAAAACATTGCCTTGCTGAGATGCGCGGCGGAATATCTTGAGATGACAGAAGACTATGCAGTTGCAAATTTGGTGGAAAGAACTGAGGCCTACTTTAATGAAGTAGCAATTAAGAGTCTTGCTGGTGCAGTTACAATTTTGCGTTCATCAGAAAATCTTCTTCCCATTGCAGAGAAAGTAAAATTGGTGAGCCGATGCATAGACACAATTGCATATACAGCCTGCAAGGATAACCAATTCTCCACATCANGTAGAGCAGAAGCTGGTATCAACGGATCCACGTTTTCAAACCCGAAGCCTATAGTTGACTGGTGGTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E327112" ref_strand="+" ref_description="SGN-E327112 [cTOC-18-P4]">
      <seq>attcctccaatacaaaatacattttttcagagacctactgctactgttaacaataatatgaccactaaaaaggatgagcttctattctctgctatgaagaggacctctgactggattttctcccaagagattcccagtgatgtaactgtaaatgcaggaggaacctcctttacactgcacaagttcccattagtttcaaagagtggatacataagaaagttgatctcagaatctaatgaggctgatgtttctactatcgatatccctgatatacctggtggaggagaggcatttgaacttgcagcaaagttttgttatggaataaattttgagattagcacagaaaacattgccttgctgagatgcgtggcggaatatcttgagatgacagaagactatgcagttgcaaatttggtggaaagaactgaggcctactttaatgaagtagcaattacgagtcttgcgggtgcagttacaattttgcgttcatcagaaaaccttcttcccattgcagagaaagtaaaattggtgagccgatgcatagacacaattgcatatacagcctgcaaggataaccnattctccacatcaggtagagcagaagctgggtatcacggatccacgttttcaaacccgaagcctatagttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="41242" stop="39597"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40942" g_stop="40830" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40829" i_stop="40740" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40739" g_stop="40670" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="183" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40669" i_stop="40365" i_length="305">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40364" g_stop="39897" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="651" r_length="468" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E327112" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327112" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40942" e_stop="40830"/>
          <exon e_start="40739" e_stop="40670"/>
          <exon e_start="40364" e_stop="39897"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCCTCCAATACAAAATACATTTTTTCAGAGACCTACTGCTACTGTTAACAATAATATGACCACTAAAAAGGATGAGCTTCTATTCTCTGCTATGAAGAGGACCTCTGACTGGTATGTTCTTTTCTCATTTTTTTAAATCTTCTGCTTTCTAGAAGTAATCTATCTCTTTATTATATTCTTCTATTATAATAATCTTAACAGGATTTTCTCCCAAGAGATTCCCAGTGATGTAACTGTAAATGCAGGAGGAACCTCCTTTACACTGCACAAGGTGAGTTGTTCTATCTGTGCCTTTGTCATAACTAATCCCTGCACACAATCAAAAAAATTGTTGTTGGTTTAATTACTAAAATTCCTAATTGGATTGAAATTATCGACCTTAGTCACATCTCAGTGTAATTATAACAACAAATTCAGTGTAATCGGGGTCGGGGGAGGGGTTATGTAGACTTACCCTAACTTTTAGGGATAGAGAGGTCCTCGCCAATATGAACGAGCTCACACAGGTCGAGTTAAGGCCTTAGTCATGATGATTGATAAGTAGGATCAATAATGTATCAGTTGTGATCCTTGCAGTTCCCATTAGTTTCAAAGAGTGGATACATAAGAAAGTTGATCTCAGAATCTAATGAGGCTGATGTTTCTACTATCGATATCCCTGATATACCTGGTGGAGGAGAGGCATTTGAACTTGCAGCAAAGTTTTGTTATGGAATAAATTTTGAGATTAGCACAGAAAACATTGCCTTGCTGAGATGCGTGGCGGAATATCTTGAGATGACAGAAGACTATGCAGTTGCAAATTTGGTGGAAAGAACTGAGGCCTACTTTAATGAAGTAGCAATTACGAGTCTTGCGGGTGCAGTTACAATTTTGCGTTCATCAGAAAACCTTCTTCCCATTGCAGAGAAAGTAAAATTGGTGAGCCGATGCATAGACACAATTGCATATACAGCCTGCAAGGATAACCAATTCTCCACATCAGGTAGAGCAGAAGCT-GGTATCAACGGATCCACGTTTTCAAACCCGAAGCCTATAGTTGAC</genome_strand>
        <mrna_strand>ATTCCTCCAATACAAAATACATTTTTTCAGAGACCTACTGCTACTGTTAACAATAATATGACCACTAAAAAGGATGAGCTTCTATTCTCTGCTATGAAGAGGACCTCTGACTG..........................................................................................GATTTTCTCCCAAGAGATTCCCAGTGATGTAACTGTAAATGCAGGAGGAACCTCCTTTACACTGCACAAG.................................................................................................................................................................................................................................................................................................................TTCCCATTAGTTTCAAAGAGTGGATACATAAGAAAGTTGATCTCAGAATCTAATGAGGCTGATGTTTCTACTATCGATATCCCTGATATACCTGGTGGAGGAGAGGCATTTGAACTTGCAGCAAAGTTTTGTTATGGAATAAATTTTGAGATTAGCACAGAAAACATTGCCTTGCTGAGATGCGTGGCGGAATATCTTGAGATGACAGAAGACTATGCAGTTGCAAATTTGGTGGAAAGAACTGAGGCCTACTTTAATGAAGTAGCAATTACGAGTCTTGCGGGTGCAGTTACAATTTTGCGTTCATCAGAAAACCTTCTTCCCATTGCAGAGAAAGTAAAATTGGTGAGCCGATGCATAGACACAATTGCATATACAGCCTGCAAGGATAACCNATTCTCCACATCAGGTAGAGCAGAAGCTGGGTATC-ACGGATCCACGTTTTCAAACCCGAAGCCTATAGTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E321121" ref_strand="+" ref_description="SGN-E321121 [cTOB-13-G10]">
      <seq>tcctccaataccaaaatacattttttcagagacctactgctactgttaacaataatatgaccactaaaaaggatgagcttctattctctgctatgaagaggaccctctgacctggattttctcccaagagattcccagtgatgtaactgtaaatgcaggaggaacctcctttaccacctgcaccaagttcccattagtttcaaagagtggatacataagaaagttgatctcagaatctaatgaggctgatgtttctacctatcgatatccctgatataccctggtggaggagaggcatttgaacttgcagcaaagttttgttatggaataaattttgagattagcacagaaaacattgccttgctgagatgcgtggcggaatatcttgagatgacagaagactatgcagttgcaaatttggtggaaagaactgaggcctactttaatgaagtagcaattacgagtcttgcgggtgcagttacaattttgcgttcatcagaaaaccttcttcccattgcagagaaagtaaaattggtgagccgatgcatagacacaattgcatatacagcctgcaaggataaccaattctccacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="41240" stop="39659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40940" g_stop="40830" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40829" i_stop="40740" i_length="90">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40739" g_stop="40670" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="187" r_length="73" r_score="0.914"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40669" i_stop="40365" i_length="305">
            <donor d_prob="0.999" d_score="0.87"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40364" g_stop="39959" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="595" r_length="408" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E321121" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321121" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40940" e_stop="40830"/>
          <exon e_start="40739" e_stop="40670"/>
          <exon e_start="40364" e_stop="39959"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCCAATA-CAAAATACATTTTTTCAGAGACCTACTGCTACTGTTAACAATAATATGACCACTAAAAAGGATGAGCTTCTATTCTCTGCTATGAAGAGGA-CCTCTGA-CTGGTATGTTCTTTTCTCATTTTTTTAAATCTTCTGCTTTCTAGAAGTAATCTATCTCTTTATTATATTCTTCTATTATAATAATCTTAACAGGATTTTCTCCCAAGAGATTCCCAGTGATGTAACTGTAAATGCAGGAGGAACCTCCTTTA-CA-CTGCA-CAAGGTGAGTTGTTCTATCTGTGCCTTTGTCATAACTAATCCCTGCACACAATCAAAAAAATTGTTGTTGGTTTAATTACTAAAATTCCTAATTGGATTGAAATTATCGACCTTAGTCACATCTCAGTGTAATTATAACAACAAATTCAGTGTAATCGGGGTCGGGGGAGGGGTTATGTAGACTTACCCTAACTTTTAGGGATAGAGAGGTCCTCGCCAATATGAACGAGCTCACACAGGTCGAGTTAAGGCCTTAGTCATGATGATTGATAAGTAGGATCAATAATGTATCAGTTGTGATCCTTGCAGTTCCCATTAGTTTCAAAGAGTGGATACATAAGAAAGTTGATCTCAGAATCTAATGAGGCTGATGTTTCTA-CTATCGATATCCCTGATATA-CCTGGTGGAGGAGAGGCATTTGAACTTGCAGCAAAGTTTTGTTATGGAATAAATTTTGAGATTAGCACAGAAAACATTGCCTTGCTGAGATGCGTGGCGGAATATCTTGAGATGACAGAAGACTATGCAGTTGCAAATTTGGTGGAAAGAACTGAGGCCTACTTTAATGAAGTAGCAATTACGAGTCTTGCGGGTGCAGTTACAATTTTGCGTTCATCAGAAAACCTTCTTCCCATTGCAGAGAAAGTAAAATTGGTGAGCCGATGCATAGACACAATTGCATATACAGCCTGCAAGGATAACCAATTCTCCACAT</genome_strand>
        <mrna_strand>TCCTCCAATACCAAAATACATTTTTTCAGAGACCTACTGCTACTGTTAACAATAATATGACCACTAAAAAGGATGAGCTTCTATTCTCTGCTATGAAGAGGACCCTCTGACCTG..........................................................................................GATTTTCTCCCAAGAGATTCCCAGTGATGTAACTGTAAATGCAGGAGGAACCTCCTTTACCACCTGCACCAAG.................................................................................................................................................................................................................................................................................................................TTCCCATTAGTTTCAAAGAGTGGATACATAAGAAAGTTGATCTCAGAATCTAATGAGGCTGATGTTTCTACCTATCGATATCCCTGATATACCCTGGTGGAGGAGAGGCATTTGAACTTGCAGCAAAGTTTTGTTATGGAATAAATTTTGAGATTAGCACAGAAAACATTGCCTTGCTGAGATGCGTGGCGGAATATCTTGAGATGACAGAAGACTATGCAGTTGCAAATTTGGTGGAAAGAACTGAGGCCTACTTTAATGAAGTAGCAATTACGAGTCTTGCGGGTGCAGTTACAATTTTGCGTTCATCAGAAAACCTTCTTCCCATTGCAGAGAAAGTAAAATTGGTGAGCCGATGCATAGACACAATTGCATATACAGCCTGCAAGGATAACCAATTCTCCACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E279135" ref_strand="-" ref_description="SGN-E279135 [cLEL-4-H1](-)">
      <seq>gcacgaggattcctccaatacaaaatacattttttcagagacctactgctactgttaacaataatatcaccactaaaaaggatgagcttctattctctgctatgaagaggacctctgactggattttctcccaagagattcccagtgatgtaactgtaaatgcaggaggaacctcctttacactgcacaagttcccattagtttcaaagagtggatacataagaaagttgatctcagaatctaatgaggctgatgtttctactatcgatatccctgatatacctggtggaggagaggcatttgaacttgcagcaaagttttgttatggaataaattttgagattagcacagaaaacattgccttgctgagatgcgtggcggaatatcttgagatgacagaagactatgcagttgcaaatttggtggaaagaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="41249" stop="39821"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40951" g_stop="40830" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40829" i_stop="40740" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40739" g_stop="40670" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="191" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40669" i_stop="40365" i_length="305">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40364" g_stop="40121" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="435" r_length="244" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E279135" ref_strand="-">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279135" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="40951" e_stop="40830"/>
          <exon e_start="40739" e_stop="40670"/>
          <exon e_start="40364" e_stop="40121"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACAATGGATTCCTCCAATACAAAATACATTTTTTCAGAGACCTACTGCTACTGTTAACAATAATATGACCACTAAAAAGGATGAGCTTCTATTCTCTGCTATGAAGAGGACCTCTGACTGGTATGTTCTTTTCTCATTTTTTTAAATCTTCTGCTTTCTAGAAGTAATCTATCTCTTTATTATATTCTTCTATTATAATAATCTTAACAGGATTTTCTCCCAAGAGATTCCCAGTGATGTAACTGTAAATGCAGGAGGAACCTCCTTTACACTGCACAAGGTGAGTTGTTCTATCTGTGCCTTTGTCATAACTAATCCCTGCACACAATCAAAAAAATTGTTGTTGGTTTAATTACTAAAATTCCTAATTGGATTGAAATTATCGACCTTAGTCACATCTCAGTGTAATTATAACAACAAATTCAGTGTAATCGGGGTCGGGGGAGGGGTTATGTAGACTTACCCTAACTTTTAGGGATAGAGAGGTCCTCGCCAATATGAACGAGCTCACACAGGTCGAGTTAAGGCCTTAGTCATGATGATTGATAAGTAGGATCAATAATGTATCAGTTGTGATCCTTGCAGTTCCCATTAGTTTCAAAGAGTGGATACATAAGAAAGTTGATCTCAGAATCTAATGAGGCTGATGTTTCTACTATCGATATCCCTGATATACCTGGTGGAGGAGAGGCATTTGAACTTGCAGCAAAGTTTTGTTATGGAATAAATTTTGAGATTAGCACAGAAAACATTGCCTTGCTGAGATGCGTGGCGGAATATCTTGAGATGACAGAAGACTATGCAGTTGCAAATTTGGTGGAAAGAACTG</genome_strand>
        <mrna_strand>GCACGA-GGATTCCTCCAATACAAAATACATTTTTTCAGAGACCTACTGCTACTGTTAACAATAATATCACCACTAAAAAGGATGAGCTTCTATTCTCTGCTATGAAGAGGACCTCTGACTG..........................................................................................GATTTTCTCCCAAGAGATTCCCAGTGATGTAACTGTAAATGCAGGAGGAACCTCCTTTACACTGCACAAG.................................................................................................................................................................................................................................................................................................................TTCCCATTAGTTTCAAAGAGTGGATACATAAGAAAGTTGATCTCAGAATCTAATGAGGCTGATGTTTCTACTATCGATATCCCTGATATACCTGGTGGAGGAGAGGCATTTGAACTTGCAGCAAAGTTTTGTTATGGAATAAATTTTGAGATTAGCACAGAAAACATTGCCTTGCTGAGATGCGTGGCGGAATATCTTGAGATGACAGAAGACTATGCAGTTGCAAATTTGGTGGAAAGAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E358646" ref_strand="+" ref_description="SGN-E358646 [cLHT-22-B3]">
      <seq>tattctctgctatgaagaggacctctgactggattttgtcccaagagattcccagagatgtaactgtaaatgcaggaggaacctcctttacactgcacaagttcccattagtttcaaagagtggatacataagaaagttggtctcagaatctaatgaggctgatgtttctacgatcgatatccctgatatacctggtggaggagaggcatttgaacttgcagcaaagttttgttatggaataaattttgagattagcacagaaaacattgccttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="41067" stop="39888"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40860" g_stop="40830" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40829" i_stop="40740" i_length="90">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40739" g_stop="40670" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="101" r_length="70" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40669" i_stop="40365" i_length="305">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.840" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40364" g_stop="40188" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="278" r_length="177" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E358646" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>278</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358646" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40860" e_stop="40830"/>
          <exon e_start="40739" e_stop="40670"/>
          <exon e_start="40364" e_stop="40188"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTCTCTGCTATGAAGAGGACCTCTGACTGGTATGTTCTTTTCTCATTTTTTTAAATCTTCTGCTTTCTAGAAGTAATCTATCTCTTTATTATATTCTTCTATTATAATAATCTTAACAGGATTTTCTCCCAAGAGATTCCCAGTGATGTAACTGTAAATGCAGGAGGAACCTCCTTTACACTGCACAAGGTGAGTTGTTCTATCTGTGCCTTTGTCATAACTAATCCCTGCACACAATCAAAAAAATTGTTGTTGGTTTAATTACTAAAATTCCTAATTGGATTGAAATTATCGACCTTAGTCACATCTCAGTGTAATTATAACAACAAATTCAGTGTAATCGGGGTCGGGGGAGGGGTTATGTAGACTTACCCTAACTTTTAGGGATAGAGAGGTCCTCGCCAATATGAACGAGCTCACACAGGTCGAGTTAAGGCCTTAGTCATGATGATTGATAAGTAGGATCAATAATGTATCAGTTGTGATCCTTGCAGTTCCCATTAGTTTCAAAGAGTGGATACATAAGAAAGTTGATCTCAGAATCTAATGAGGCTGATGTTTCTACTATCGATATCCCTGATATACCTGGTGGAGGAGAGGCATTTGAACTTGCAGCAAAGTTTTGTTATGGAATAAATTTTGAGATTAGCACAGAAAACATTGCCTTGCTG</genome_strand>
        <mrna_strand>TATTCTCTGCTATGAAGAGGACCTCTGACTG..........................................................................................GATTTTGTCCCAAGAGATTCCCAGAGATGTAACTGTAAATGCAGGAGGAACCTCCTTTACACTGCACAAG.................................................................................................................................................................................................................................................................................................................TTCCCATTAGTTTCAAAGAGTGGATACATAAGAAAGTTGGTCTCAGAATCTAATGAGGCTGATGTTTCTACGATCGATATCCCTGATATACCTGGTGGAGGAGAGGCATTTGAACTTGCAGCAAAGTTTTGTTATGGAATAAATTTTGAGATTAGCACAGAAAACATTGCCTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E270818" ref_strand="+" ref_description="SGN-E270818 [cLEM-6-A2]">
      <seq>aataatatgaccactaaaaaggatgagcttctattctctgctatgaagaggacctctgactggattttctcccaagagattcccagtgatgtaactgtaaatgcaggaggaacctcctttacactgcacaagttcccattagtttcaaagagtggatacataagaaagtggatctcagaatctaatgaggctgatgtttctactatcaatatccctgatatacctggtggaggagaggcatttgaacttgcagcaaagttttgttatggaataaattttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="41191" stop="39916"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40891" g_stop="40830" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40829" i_stop="40740" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40739" g_stop="40670" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="132" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40669" i_stop="40365" i_length="305">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40364" g_stop="40216" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="281" r_length="149" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E270818" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>281</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40891" e_stop="40830"/>
          <exon e_start="40739" e_stop="40670"/>
          <exon e_start="40364" e_stop="40216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAATATGACCACTAAAAAGGATGAGCTTCTATTCTCTGCTATGAAGAGGACCTCTGACTGGTATGTTCTTTTCTCATTTTTTTAAATCTTCTGCTTTCTAGAAGTAATCTATCTCTTTATTATATTCTTCTATTATAATAATCTTAACAGGATTTTCTCCCAAGAGATTCCCAGTGATGTAACTGTAAATGCAGGAGGAACCTCCTTTACACTGCACAAGGTGAGTTGTTCTATCTGTGCCTTTGTCATAACTAATCCCTGCACACAATCAAAAAAATTGTTGTTGGTTTAATTACTAAAATTCCTAATTGGATTGAAATTATCGACCTTAGTCACATCTCAGTGTAATTATAACAACAAATTCAGTGTAATCGGGGTCGGGGGAGGGGTTATGTAGACTTACCCTAACTTTTAGGGATAGAGAGGTCCTCGCCAATATGAACGAGCTCACACAGGTCGAGTTAAGGCCTTAGTCATGATGATTGATAAGTAGGATCAATAATGTATCAGTTGTGATCCTTGCAGTTCCCATTAGTTTCAAAGAGTGGATACATAAGAAAGTTGATCTCAGAATCTAATGAGGCTGATGTTTCTACTATCGATATCCCTGATATACCTGGTGGAGGAGAGGCATTTGAACTTGCAGCAAAGTTTTGTTATGGAATAAATTTTGA</genome_strand>
        <mrna_strand>AATAATATGACCACTAAAAAGGATGAGCTTCTATTCTCTGCTATGAAGAGGACCTCTGACTG..........................................................................................GATTTTCTCCCAAGAGATTCCCAGTGATGTAACTGTAAATGCAGGAGGAACCTCCTTTACACTGCACAAG.................................................................................................................................................................................................................................................................................................................TTCCCATTAGTTTCAAAGAGTGGATACATAAGAAAGTGGATCTCAGAATCTAATGAGGCTGATGTTTCTACTATCAATATCCCTGATATACCTGGTGGAGGAGAGGCATTTGAACTTGCAGCAAAGTTTTGTTATGGAATAAATTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E408958" ref_strand="+" ref_description="SGN-E408958 [PPI-12-P13]">
      <seq>cggatcgcttcccaataatattgttcaggtaccactactactagtctagtctttttctcttgtcttctctacttatttctcaaaaaaaaaaagttcatttggaaatacttttctctaattccttcctctcatgatgcaatttactgagagtttacctccacaagtttcatcattttcaagtttgatgatgaataagaatagtaatactaataataatcagatccaacacgcgcgcccatggcctggttttcacacatcgaagaatttgggaaacattggggatactaattgcatggaacagttgttagtccattgcgccaatgccatcgacagcaatgacgcaactttagcacaacaaatattgtgggtccttaataacattgcccctcctgatggtgactcgaaaccacgcctaacttgtggattccntcgagccctaattcttcgtgctgcgaaaattgggacctgcaaattactcacttctaatctgaatcattccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="47035" stop="48166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47334" g_stop="47866" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="501" r_length="501" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E408958" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.064" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E408958" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47334" e_stop="47866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATCGCTTCCCAATAATATTGGTCAGGTACCACTACTACTAGTCTAGTCTTTTTCTCTTCTCTTCTCCTCTCTACTTATTTCTCTAAAAACAAAAACAAAAAAAAAAAAGTTTCATTCACAAGTTCAATTGGAAAAACTTTTCTCTAATTCCTTCCTCTCATGATGCAATTTACTGAGAGTTTACCTCCACAAGTTTCATCATTTTCAAGTTTGATGATGAACAAGGATAGTAGTACTAATAATAATCAGATCCAACGCGCCCGCCCGTGGCCTGGTTTTCACACATCGAAGAATTTGGGGAACATTGGGGATACTAATTGCATGGAACAGTTGTTAGTCCATTGCGCCAATGCCATCGAGAGCAATGACGCAACTTTAGCACAACAAATATTATGGGTCCTTAATAACATTGCCCCTCCTGATGGTGACTCGAACCAACGCCTAACTTGTGGATTCCTACGAGCCCTAATTCTTCGTGCTGCGAAAATTGGGACTTGTAAATTACTCACTGCTAATCTGAATCATTCCAT</genome_strand>
        <mrna_strand>CGGATCGCTTCCCAATAATATTGTTCAGGTACCACTACTACTAGTCTAGTCTTTTTCTC-T-T-GTCT--TCTCTACTTA-TT-TCT-----C--AAA--AA-AA-AA-AAG-----TT--C-A--T---TTGGAAATACTTTTCTCTAATTCCTTCCTCTCATGATGCAATTTACTGAGAGTTTACCTCCACAAGTTTCATCATTTTCAAGTTTGATGATGAATAAGAATAGTAATACTAATAATAATCAGATCCAACACGCGCGCCCATGGCCTGGTTTTCACACATCGAAGAATTTGGGAAACATTGGGGATACTAATTGCATGGAACAGTTGTTAGTCCATTGCGCCAATGCCATCGACAGCAATGACGCAACTTTAGCACAACAAATATTGTGGGTCCTTAATAACATTGCCCCTCCTGATGGTGACTCGAAACCACGCCTAACTTGTGGATTCCNTCGAGCCCTAATTCTTCGTGCTGCGAAAATTGGGACCTGCAAATTACTCACTTCTAATCTGAATCATTCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E473400" ref_strand="+" ref_description="SGN-E473400 [cSTB-32-A8]">
      <seq>gaaactcataaattctccattattgagcttgcaagtttcgttgacttaaccccgtggcatcggttcgggttcacggctgctaacggagctatattagaagctgtggaaggttactctattattcacattgttgattttagcttaactcattgcatgcaaattccaacacttatagatgcaatttctactcgagtagaaggaccgccgttaatcaaactaacggtagctggtgcaaccgaagatttaccgcctatgcttgatctttcttacgaagaattaggtgctaaattggtaaatttcgcaaggtcacgaaatgtcatgatggaatttagagtaattccttcaagttcatcagatggtttttcgaatgtattcgaacagctacgtgtccaaaatctaatacgtcctgataatggcgaagcactagtaataaactgtcacatgatgcttcattacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="47568" stop="48627"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47868" g_stop="48327" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="459" r_length="459" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E473400" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E473400" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47868" e_stop="48327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACTCATAAATTCTCCATTATTGAGCTTGCAAGTTTCGTTGATTTAACCCCCTTGGCATCGGTTCGGGTTCACGGCTGCTAACGCTTCTATATTAGAAGCTGTGGAAGGTTACTCTATTATTCACATTGTTGATTTCAGCTTAACTCATTGCATGCAAATTCCAACACTTATAGATGCAGTTTCTACTCGAGTAGAAGGACCTCCGTTGATCAAACTAACGGTAGCTGGTGCAACCGAAGATTTACCGCCTATGCTTGATCTTTCTTACGAAGAATTAGGTGCTAAATTGGTAAATTTCGCAAGGTCACGAAATGTCATGATGGAATTTAGAGTAATTCCTTCGAGTTCTTCGGATGGTTTTTCAAATGTAATCGAACAGCTACGTGTTCAAAATCTAATACGTCCGGATAATGGCGAAGCACTAGTAATAAACTGTCACATGATGCTTCATTACATA</genome_strand>
        <mrna_strand>GAAACTCATAAATTCTCCATTATTGAGCTTGCAAGTTTCGTTGACTTAA-CCCCGTGGCATCGGTTCGGGTTCACGGCTGCTAACGGAGCTATATTAGAAGCTGTGGAAGGTTACTCTATTATTCACATTGTTGATTTTAGCTTAACTCATTGCATGCAAATTCCAACACTTATAGATGCAATTTCTACTCGAGTAGAAGGACCGCCGTTAATCAAACTAACGGTAGCTGGTGCAACCGAAGATTTACCGCCTATGCTTGATCTTTCTTACGAAGAATTAGGTGCTAAATTGGTAAATTTCGCAAGGTCACGAAATGTCATGATGGAATTTAGAGTAATTCCTTCAAGTTCATCAGATGGTTTTTCGAATGTATTCGAACAGCTACGTGTCCAAAATCTAATACGTCCTGATAATGGCGAAGCACTAGTAATAAACTGTCACATGATGCTTCATTACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E573593" ref_strand="+" ref_description="SGN-E573593 [32928]">
      <seq>atttgatcgagataaaataaaacaaaagttaatagctaagtcaaatgaaattaattaactaaagaggaacccaagcagtagcaaacacaacactatgtcctttccatgtaagcacaagatcttcttcatccctctttagcccccacccagctgcatgctcatccaacatgttcttcacttccgtaactccctcttcactaaatccactgctcctgaaatttgcatttctcatccgttgcacccactgactcttcggctccagcctttctagtcgttgtataccctcctgagctatcacattctcaatcttccagcaaatatccgcttcgtaccactgcctttgcttgctccctcgcggaagaaatgtatccactgtatcataaggtatccataaataattaaacgcggatcttaatctgcacacgagattattagaagtaaaatccgcgtcttcatctactagcacaacaatcgttgggtccaaattccgaatggccttaagaaacatggcacggaacgaattggaaagaaccgttgtttcctctggtatgtaatgaagcatcatgtgacagtttattactagtgcttcgcccattatcaggacgtattagattttggacacgtagctgttcgaatacattcgaaaaaccatctgatgaacttgaaggaatactctaaattccatcatgacatttcgtgaaccttgcgaaatttaccaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="49173" stop="47854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48873" g_stop="48154" g_length="720"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="722" r_length="722" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E573593" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E573593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48873" e_stop="48154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGATGGAGTTAAAATAAAACAAAAGTTAATA-CTAAGTGAAATGAAATTAATTAACTAAAGAGGAACCCAAGCAGTAGCAAATACAACATTATGTCCTTTCCATGTAAGCACAAGATATTCTTCATCCCTCTTTAGCCCCCACCCAGCTGCATGTTCATCCAACATGTTCTTCACTTCCGTAACTCCCTCTTCGCTAAATCCACTGCTTCTGAAATTTGCATTTCTCATCCGTTGCACCCACTGACTCTTCGGCTCCAGCCGTTCTAGTCGTTGTATTCCCTCCTGAGCTATCACGTTCTCAATCTTCCAGCAAATATCCGCTTCATACCACTGCCTTTGCTTGCTCCCTCGCGGAAGAAATGTATCCACTGTATCATAAGGTATCCATAAATAATTAAACGCCGATCTTAATCTGCACACCAGATTATTAGAAGTAAAATCCGCGTCTTCATCTACTAGCACAACAATTGTTGGGTCCAAATTCCGAATGGCCTTAAGAAACATGGCACGGAATGAGTTGGAAATTACCGTTGTTTCCTCCGGTATGTAATGAAGCATCATGTGACAGTTTATTACTAGTGCTTCG-CCATTATCCGGACGTATTAGATTTTGAACACGTAGCTGTTCGATTACATTTGAAAAACCATCCGAAGAACTCGAAGGAATTACTCTAAATTCCATCATGACATTTCGTG-ACCTTGCGAAATTTACCAATTT</genome_strand>
        <mrna_strand>ATTTGATCGAGATAAAATAAAACAAAAGTTAATAGCTAAGTCAAATGAAATTAATTAACTAAAGAGGAACCCAAGCAGTAGCAAACACAACACTATGTCCTTTCCATGTAAGCACAAGATCTTCTTCATCCCTCTTTAGCCCCCACCCAGCTGCATGCTCATCCAACATGTTCTTCACTTCCGTAACTCCCTCTTCACTAAATCCACTGCTCCTGAAATTTGCATTTCTCATCCGTTGCACCCACTGACTCTTCGGCTCCAGCCTTTCTAGTCGTTGTATACCCTCCTGAGCTATCACATTCTCAATCTTCCAGCAAATATCCGCTTCGTACCACTGCCTTTGCTTGCTCCCTCGCGGAAGAAATGTATCCACTGTATCATAAGGTATCCATAAATAATTAAACGCGGATCTTAATCTGCACACGAGATTATTAGAAGTAAAATCCGCGTCTTCATCTACTAGCACAACAATCGTTGGGTCCAAATTCCGAATGGCCTTAAGAAACATGGCACGGAACGAATTGGAAAGAACCGTTGTTTCCTCTGGTATGTAATGAAGCATCATGTGACAGTTTATTACTAGTGCTTCGCCCATTATCAGGACGTATTAGATTTTGGACACGTAGCTGTTCGAATACATTCGAAAAACCATCTGATGAACTTGAAGGAA-TACTCTAAATTCCATCATGACATTTCGTGAACCTTGCGAAATTTACCAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E213077" ref_strand="+" ref_description="SGN-E213077 [cLEC-72-D14]">
      <seq>gaacagctacgtgttcaaaatctaatacgtccggataatggcgaagcactagtaataaactgtcacatgatgcttcattacataccggaggaaacaacggtaatttccaactcattccgtgccatgtttcttaaggccattcggaatttggacccaacaattgttgtgctagtagatgaagacgcggattttacttctaataatctggtgtgcagattaagatcggcgtttaattatttatggataccttatgatacagtggatacatttcttccgcgagggagcaagcaaaggcagtggtatgaagcggatatttgctggaagattgagaacgtgatagctcaggagggaatacaacgactagaacggctggagccgaagagtcagtgggtgcaacggatgagaaatgcaaatttcagaagcagtggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="47944" stop="48973"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48244" g_stop="48673" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="430" r_length="430" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E213077" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213077" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48244" e_stop="48673"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAGCTACGTGTTCAAAATCTAATACGTCCGGATAATGGCGAAGCACTAGTAATAAACTGTCACATGATGCTTCATTACATACCGGAGGAAACAACGGTAATTTCCAACTCATTCCGTGCCATGTTTCTTAAGGCCATTCGGAATTTGGACCCAACAATTGTTGTGCTAGTAGATGAAGACGCGGATTTTACTTCTAATAATCTGGTGTGCAGATTAAGATCGGCGTTTAATTATTTATGGATACCTTATGATACAGTGGATACATTTCTTCCGCGAGGGAGCAAGCAAAGGCAGTGGTATGAAGCGGATATTTGCTGGAAGATTGAGAACGTGATAGCTCAGGAGGGAATACAACGACTAGAACGGCTGGAGCCGAAGAGTCAGTGGGTGCAACGGATGAGAAATGCAAATTTCAGAAGCAGTGGAT</genome_strand>
        <mrna_strand>GAACAGCTACGTGTTCAAAATCTAATACGTCCGGATAATGGCGAAGCACTAGTAATAAACTGTCACATGATGCTTCATTACATACCGGAGGAAACAACGGTAATTTCCAACTCATTCCGTGCCATGTTTCTTAAGGCCATTCGGAATTTGGACCCAACAATTGTTGTGCTAGTAGATGAAGACGCGGATTTTACTTCTAATAATCTGGTGTGCAGATTAAGATCGGCGTTTAATTATTTATGGATACCTTATGATACAGTGGATACATTTCTTCCGCGAGGGAGCAAGCAAAGGCAGTGGTATGAAGCGGATATTTGCTGGAAGATTGAGAACGTGATAGCTCAGGAGGGAATACAACGACTAGAACGGCTGGAGCCGAAGAGTCAGTGGGTGCAACGGATGAGAAATGCAAATTTCAGAAGCAGTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E434593" ref_strand="-" ref_description="SGN-E434593 [STM-60-M5]">
      <seq>gattaagatccgcgtttaattatttatggatcccttatgatacagtggatacatttcttccgcgagggagcaagcaaaggcagtggtacgaagcggatatttgctggaagattgagaatgtgatagctcaggagggtatacaacgactagaaaggctggagccgaagagtcagtgggtgcaacggatgagaaatgcaaatttcaggagcagtggatttagtgaagagggagttacggaagtgaagaacatgttggatgagcatgcagctgggtgggggctaaagagggatgaagaagatcttgtgcttacatggaaaggacatagtgttgtgtttgctactgcttgggttcctctttagttaattaatttcatttgacttagctattaaaaaaaaaaaaaaaaaaaaaaaaaaaaacagtaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="48158" stop="56823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48458" g_stop="48838" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48839" i_stop="49224" i_length="386">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.891" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49225" g_stop="49235" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="392" r_length="11" r_score="0.818"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49236" i_stop="50001" i_length="766">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.66"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50002" g_stop="50045" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="435" r_length="43" r_score="0.659"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E434593" ref_strand="-">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E434593" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="48458" e_stop="48838"/>
          <exon e_start="49225" e_stop="49235"/>
          <exon e_start="50002" e_stop="50045"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTAAGATCGGCGTTTAATTATTTATGGATACCTTATGATACAGTGGATACATTTCTTCCGCGAGGGAGCAAGCAAAGGCAGTGGTATGAAGCGGATATTTGCTGGAAGATTGAGAACGTGATAGCTCAGGAGGGAATACAACGACTAGAACGGCTGGAGCCGAAGAGTCAGTGGGTGCAACGGATGAGAAATGCAAATTTCAGAAGCAGTGGATTTAGCGAAGAGGGAGTTACGGAAGTGAAGAACATGTTGGATGAACATGCAGCTGGGTGGGGGCTAAAGAGGGATGAAGAATATCTTGTGCTTACATGGAAAGGACATAATGTTGTATTTGCTACTGCTTGGGTTCCTCTTTAGTTAATTAATTTCATTTCACTTAGTATTAACTTTTGTTTTATTTTAACTCCATCAAATCTTCTTCATTATTAGTATTCCATATATCGCTGAGCTAATTAGTTAGTTGACCTTAGACATTAGGTTGTGATGGGGTTTGAATCCTAGTTTTTCCTATGCAGATTTTCTGTATGTGAAAGTACAAATGAACATGCATGAACTTTTTTTCTTATCGATAATAACCTTAAGGCCTATTTATTTAGAGGATTTGTTTGAAACTAAGCTACTAAGTACTAATGATTTACAATATATCCTTCGGGATGACTCAATTGGTTTGGAGGGTGGTTTCACACAGATGATCCGGGATCAATCCTCCATCAATGCTTTCTGAGTCGAGCCTAGTGCAGTTTAAATTCCATGCGTGGTTTGTAGGCTATTACACAGCAAAGGTTTATCCAATGATCAACACAGAGTGCTCACCCTAAAGACAGAAGTTGTAGCGATTTATTATCCAGGGTTAAAAAAAAACTTAAGTGATTTAATAATTTATACGCATGAATTTTGGTGCACTTAAAGATATGGTGACTACACTTTACATGCCACTTCTTCATTTGTTTGACGAGTTAGAAGACTAGAAAGTTGCATATTTTTCAGCAGGTACGTACCAGTTCTAGCCCTAAAAAATGTCCTTCTACCTGGTAGAAAAAAAATATGAGTTTCATGATCATGTACATTATATTGAATTATGTTAATTTACTCTATATAATTCTTTTAATATATTTGTAATATTCTATTATCAATTTATTTACATTGACCAACCAATTAGTTACAAATATAATTGTGGATTATATGGACACACAAACCATAAATGCCTTTACAATCTCGCCCATTTTTTTTGTGAAAATAACGTTTGCGTAGACAGAGCTAATTTTGTAAGCAGTTCAAAGAGAAAGGTATCTTCTATACCTAGGAATTAAGATATAAATTTGATAACAACGAGATATATTAATTCTGTTTGTTTACTTGTTTAATATTCTATGCCTCTTTTTTCTTCAAATACTCCACGCTCTTGTTATGAGATTCTAAATATAAATGAGATAATAATATCTCATGTGATTACTTGACTGAGATCTTTTTTCTTTCAGAAAATCACTCTAACTATGATATTTTACTTACAAAGTCACTCAATCATTTGATTGATTCTTTATTTAAAAATTACAAAATAATATATAACAATAAAAAAAATTTAATGA</genome_strand>
        <mrna_strand>GATTAAGATCCGCGTTTAATTATTTATGGATCCCTTATGATACAGTGGATACATTTCTTCCGCGAGGGAGCAAGCAAAGGCAGTGGTACGAAGCGGATATTTGCTGGAAGATTGAGAATGTGATAGCTCAGGAGGGTATACAACGACTAGAAAGGCTGGAGCCGAAGAGTCAGTGGGTGCAACGGATGAGAAATGCAAATTTCAGGAGCAGTGGATTTAGTGAAGAGGGAGTTACGGAAGTGAAGAACATGTTGGATGAGCATGCAGCTGGGTGGGGGCTAAAGAGGGATGAAGAAGATCTTGTGCTTACATGGAAAGGACATAGTGTTGTGTTTGCTACTGCTTGGGTTCCTCTTTAGTTAATTAATTTCATTTGACTTA..................................................................................................................................................................................................................................................................................................................................................................................................GCTATTAAAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAACAGTAAAAAAAA-AACTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E460525" ref_strand="-" ref_description="SGN-E460525 [cPRO-31-F23]">
      <seq>tcagccttcaaaatttaatagacccaaccctgaacaagcaatatgcagctcaattacaagggatgtgtccaaggaatgttgacccaaggatagccattgacatggatcccaaaactccaaggacatttgacaataattactacaaaaatttacaacaaggtatgggcctattcacatcagatcaagtgctgtatacagacaaaaggtccaagggaactgtggacctttgggccagtaactcaaaatcattccaaaatgcttttacaactgcaatgacaaaattgggccgagttggtgtgaagacagggaggaacggaaatattcggtttgattgtggaagaatgaactgaagggacattttccacaaatggccactatttagcttaatggattaaatttgtcgactaaaataaaataaattatttaataaggcaaaaattagttcattgagtgttatcaaggatagaattttatttatatttttatttgtgggaaggtgagtcctgaataaggggactagacttgaaccttttaatgtttatatgaaaaataacagtcctattgtgggatgtgtaattgttgaataaaaactatgtgtgaaatccatttttcataaaaaaaaaaaaaaaaaaaaaaaaaaactcagactagttctctctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="52812" stop="51591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52512" g_stop="51891" g_length="622"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="605" r_length="605" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="613" polyA_stop="641"/>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E460525" ref_strand="-">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E460525" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="52512" e_stop="51891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCCCTAAAAATCCAATAGACCCAACCCTTAACAAGCAATATGCAGCCCAATTACAAGGGATGTGTCCAAGGAATGTTGACCCAAGAATAGCCATTGACATGGATCCCAAAACTCCAAGGACATTTGACAATAATTACTACAAAAATTTACAACAAGGTATGGGCCTATTCACGTCAGATCAAGTGTTGTATACAGACAAAAGGTCCAAGGGAACTGTGGATCTTTGGGCCAGTAACTCAAAATCATTCCAAAATGCTTTTGTAACTGCAATGACAAAACTGGGCCGAGTTGGTGTGAAGACGGGGAGGAACGGAAATATTCGGTTTGATTGTGGAAGAATGAATTGAAGTGACATTTTACACAAATGGCCAATACTTATAGATTCTGTCCCAGTTAGCTTAATGGATTAAATTTGTCGAATAAATTAAAAT-TTTATTTTAATTACGCAAAAATTAGTTCGTTGAGTGTTGTCAAGGATAGGAGTTTATTTATATTTTTATTTGTAGGAAGGTGAGTCCTGAATAAGGGGATTAGTCTTGAACCTTCTAATGTTTATATGAAAAATAACAGTCCTATTGTGGGATGTGTAATTGTTGAATAAAAACTCTGTGTGAAATCC</genome_strand>
        <mrna_strand>TCAGCCTTCAAAATTTAATAGACCCAACCCTGAACAAGCAATATGCAGCTCAATTACAAGGGATGTGTCCAAGGAATGTTGACCCAAGGATAGCCATTGACATGGATCCCAAAACTCCAAGGACATTTGACAATAATTACTACAAAAATTTACAACAAGGTATGGGCCTATTCACATCAGATCAAGTGCTGTATACAGACAAAAGGTCCAAGGGAACTGTGGACCTTTGGGCCAGTAACTCAAAATCATTCCAAAATGCTTTTACAACTGCAATGACAAAATTGGGCCGAGTTGGTGTGAAGACAGGGAGGAACGGAAATATTCGGTTTGATTGTGGAAGAATGAACTGAAGGGACATTTTCCACAAATGGCC---AC---T--A-----T-----TTAGCTTAATGGATTAAATTTGTCGACTAAAATAAAATAAATTATTTAATAAGGCAAAAATTAGTTCATTGAGTGTTATCAAGGATAGAATTTTATTTATATTTTTATTTGTGGGAAGGTGAGTCCTGAATAAGGGGACTAGACTTGAACCTTTTAATGTTTATATGAAAAATAACAGTCCTATTGTGGGATGTGTAATTGTTGAATAAAAACTATGTGTGAAATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E374701" ref_strand="+" ref_description="SGN-E374701 [TUS-14-H2](-)">
      <seq>actcaattctatgtttgcctctcatggtctaactcaggctgacatgatcgccctttctgcggcccattctgttggtttttctcattgtggcaaattttccaaccggatctacaacttcagccctaaaaatccaatagacccaacccttaacaagcaatatgcagcccaattacaagggatgtgtccaaggaatgttgacccaagaatagccattgacatggatcccaaaactccaaggacatttgacaataattactacaaaaatttacaacaaggtatgggcctattcacgtcagatcaagtgttgtatacagacaaaaggtccaagggaactgtggatctttgggccagtaactcaaaatcattccaaaatgcttttgtaactgcaatgacaaaactgggccgagttggtgtgaagacggggaggaacggaaatattcggtttgattgtggaagaatgaattgaagtgacattttacacaaatggccaatacttatagattctgtcccagttagcttaatggattaaatttgtcgaataaattaaaattttattttaattacgcaaaaattagttcgttgagtgttgtcaaggataggagtttatttatatttttatttgtaggaaggtgagtcctgaataaggggattagtcttgaaccttctaatgtttatatgaaaaataacagtcctattgtgggatgtgtaaaagttgaataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="53774" stop="51606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53474" g_stop="53416" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53415" i_stop="52570" i_length="846">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52569" g_stop="51899" g_length="671"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="730" r_length="671" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E374701" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374701" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53474" e_stop="53416"/>
          <exon e_start="52569" e_stop="51899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTGGTAATTCTGATGTTAATTACTTTCTTTATATAACTATTAATTAATTGTTAATTGTTATATTTAGTAGTTGATCTAGCTAGCTGTTTTGAAAATTCTGCTTTCAATATCTGAAGCAAGCAAGCAGATTTTAAAACAAATATAATATATAAAAAGGTTTATTTCGCTAAAGAAAATAAAATGCTCTATATAGATAGTAATATATTACTCAGTTTCTTTTTTAGTAAGTAGAAGAGAACTAGATTATAAATTTCAAAAGTTTATTTTTTTAAAAAAAAATTATGTACTAAGTCAAACTAACTTATACTCCTTCGATTCACAAATAGTTATACTAAAAAGGATGTTCAAGATTAATTGTCAATTTAAACGTTCAAGAAATAATTAGTTTTTTTTCTTAATTCTACCCTTAATAATTACTTCATTTTAATCAATTGAAAAACTATGTAGACTTTTGATATTCTTGCTATTATAAAATTATATTAGTCAAATTATACTTTGCATTAAATTTTTCTTGTCGAAAGTACATGATTTTACTCAGATAAATAATTGTGGACGGAGAAAATATGAAATAGGATTATGAGAGTATTAAATATTATTCAAACACTCGAATCATGGTCTTAAATTCCTTTTAATAAGTCTCTTATCATTTTTCATTTGACCTTTTGCTTTTTAGCACGTGTTATTGATTCAGACGTAACCATTACTCAATTATTTGGTTCATTATACTCCAGCCAGCTCAGTAGACAAAAGGGAAAAAAATAAGTCCAGACATTATCATGAGCATCTTCCACAATGTAATAATTTTATATGCTTGATCGAGAAATTAAGATCTCTTGCTCACTTATGCAGCGGCCCATTCTGTTGGTTTTTCTCATTGTGGCAAATTTTCCAACCGGATCTACAACTTCAGCCCTAAAAATCCAATAGACCCAACCCTTAACAAGCAATATGCAGCCCAATTACAAGGGATGTGTCCAAGGAATGTTGACCCAAGAATAGCCATTGACATGGATCCCAAAACTCCAAGGACATTTGACAATAATTACTACAAAAATTTACAACAAGGTATGGGCCTATTCACGTCAGATCAAGTGTTGTATACAGACAAAAGGTCCAAGGGAACTGTGGATCTTTGGGCCAGTAACTCAAAATCATTCCAAAATGCTTTTGTAACTGCAATGACAAAACTGGGCCGAGTTGGTGTGAAGACGGGGAGGAACGGAAATATTCGGTTTGATTGTGGAAGAATGAATTGAAGTGACATTTTACACAAATGGCCAATACTTATAGATTCTGTCCCAGTTAGCTTAATGGATTAAATTTGTCGAATAAATTAAAATTTTATTTTAATTACGCAAAAATTAGTTCGTTGAGTGTTGTCAAGGATAGGAGTTTATTTATATTTTTATTTGTAGGAAGGTGAGTCCTGAATAAGGGGATTAGTCTTGAACCTTCTAATGTTTATATGAAAAATAACAGTCCTATTGTGGGATGTGTAATTGTTGAATAAAAACTCTGTG</genome_strand>
        <mrna_strand>ACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCCCATTCTGTTGGTTTTTCTCATTGTGGCAAATTTTCCAACCGGATCTACAACTTCAGCCCTAAAAATCCAATAGACCCAACCCTTAACAAGCAATATGCAGCCCAATTACAAGGGATGTGTCCAAGGAATGTTGACCCAAGAATAGCCATTGACATGGATCCCAAAACTCCAAGGACATTTGACAATAATTACTACAAAAATTTACAACAAGGTATGGGCCTATTCACGTCAGATCAAGTGTTGTATACAGACAAAAGGTCCAAGGGAACTGTGGATCTTTGGGCCAGTAACTCAAAATCATTCCAAAATGCTTTTGTAACTGCAATGACAAAACTGGGCCGAGTTGGTGTGAAGACGGGGAGGAACGGAAATATTCGGTTTGATTGTGGAAGAATGAATTGAAGTGACATTTTACACAAATGGCCAATACTTATAGATTCTGTCCCAGTTAGCTTAATGGATTAAATTTGTCGAATAAATTAAAATTTTATTTTAATTACGCAAAAATTAGTTCGTTGAGTGTTGTCAAGGATAGGAGTTTATTTATATTTTTATTTGTAGGAAGGTGAGTCCTGAATAAGGGGATTAGTCTTGAACCTTCTAATGTTTATATGAAAAATAACAGTCCTATTGTGGGATGTGTAAAAGTTGAATAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E377749" ref_strand="+" ref_description="SGN-E377749 [TUS-21-D9](-)">
      <seq>gtgacattttacacaaatggccaatacttatagattctgtcccagttagcttaatggattaaatttgtcgaataaattaaaattttattttaattacgcaaaaattagttcgttgagtgttgtcaaggataggagtttatttatatttttatttgtaggaaggtgagtcctgaataaggggattagtcttgaaccttctaatgtttatatgaaaaataacagtcctattgtgggatgtgtaattgttgaataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="52461" stop="51606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52161" g_stop="51900" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="262" r_length="262" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E377749" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>262</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52161" e_stop="51900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGACATTTTACACAAATGGCCAATACTTATAGATTCTGTCCCAGTTAGCTTAATGGATTAAATTTGTCGAATAAATTAAAATTTTATTTTAATTACGCAAAAATTAGTTCGTTGAGTGTTGTCAAGGATAGGAGTTTATTTATATTTTTATTTGTAGGAAGGTGAGTCCTGAATAAGGGGATTAGTCTTGAACCTTCTAATGTTTATATGAAAAATAACAGTCCTATTGTGGGATGTGTAATTGTTGAATAAAAACTCTGT</genome_strand>
        <mrna_strand>GTGACATTTTACACAAATGGCCAATACTTATAGATTCTGTCCCAGTTAGCTTAATGGATTAAATTTGTCGAATAAATTAAAATTTTATTTTAATTACGCAAAAATTAGTTCGTTGAGTGTTGTCAAGGATAGGAGTTTATTTATATTTTTATTTGTAGGAAGGTGAGTCCTGAATAAGGGGATTAGTCTTGAACCTTCTAATGTTTATATGAAAAATAACAGTCCTATTGTGGGATGTGTAATTGTTGAATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E395880" ref_strand="+" ref_description="SGN-E395880 [TUS-18-B1](-)">
      <seq>gccctaaaaatccaatagacccaacccttaacaagcaatatgcagcccaattacaagggatgtgtccaaggaatgttgacccaagaatagccattgacatggatcccaaaactccaaggacatttgacaataattactacaaaaatttacaacaaggtatgggcctattcacgtcagatcaagtgttgtatacagacaaaaggtccaagggaactgtggatctttgggccagtaactcaaaatcattccaaaatgcttttgtaactgcaatgacaaaactgggccgagttggtgtgaagacggggaggaacggaaatattcggtttgattgtggaagaatgaattgaagtgacattttacacaaatggccaatacttatagattctgtcccagttagcttaatggattaaatttgtcgaataaattaaaattttattttaattacgcaaaaattagttcgttgagtgttgtcaaggataggagtttatttatatttttatttgtaggaaggtgagtcctgaataaggggattagtcttgaaccttttaatgtttatatgaaaaatagcagtcctattgtgggatgtgtaattgttgaataaaaaaaagaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="52809" stop="51606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52509" g_stop="51906" g_length="604"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="604" r_length="604" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="605" polyA_stop="624"/>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E395880" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52509" e_stop="51906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCTAAAAATCCAATAGACCCAACCCTTAACAAGCAATATGCAGCCCAATTACAAGGGATGTGTCCAAGGAATGTTGACCCAAGAATAGCCATTGACATGGATCCCAAAACTCCAAGGACATTTGACAATAATTACTACAAAAATTTACAACAAGGTATGGGCCTATTCACGTCAGATCAAGTGTTGTATACAGACAAAAGGTCCAAGGGAACTGTGGATCTTTGGGCCAGTAACTCAAAATCATTCCAAAATGCTTTTGTAACTGCAATGACAAAACTGGGCCGAGTTGGTGTGAAGACGGGGAGGAACGGAAATATTCGGTTTGATTGTGGAAGAATGAATTGAAGTGACATTTTACACAAATGGCCAATACTTATAGATTCTGTCCCAGTTAGCTTAATGGATTAAATTTGTCGAATAAATTAAAATTTTATTTTAATTACGCAAAAATTAGTTCGTTGAGTGTTGTCAAGGATAGGAGTTTATTTATATTTTTATTTGTAGGAAGGTGAGTCCTGAATAAGGGGATTAGTCTTGAACCTTCTAATGTTTATATGAAAAATAACAGTCCTATTGTGGGATGTGTAATTGTTGAATAAAAA</genome_strand>
        <mrna_strand>GCCCTAAAAATCCAATAGACCCAACCCTTAACAAGCAATATGCAGCCCAATTACAAGGGATGTGTCCAAGGAATGTTGACCCAAGAATAGCCATTGACATGGATCCCAAAACTCCAAGGACATTTGACAATAATTACTACAAAAATTTACAACAAGGTATGGGCCTATTCACGTCAGATCAAGTGTTGTATACAGACAAAAGGTCCAAGGGAACTGTGGATCTTTGGGCCAGTAACTCAAAATCATTCCAAAATGCTTTTGTAACTGCAATGACAAAACTGGGCCGAGTTGGTGTGAAGACGGGGAGGAACGGAAATATTCGGTTTGATTGTGGAAGAATGAATTGAAGTGACATTTTACACAAATGGCCAATACTTATAGATTCTGTCCCAGTTAGCTTAATGGATTAAATTTGTCGAATAAATTAAAATTTTATTTTAATTACGCAAAAATTAGTTCGTTGAGTGTTGTCAAGGATAGGAGTTTATTTATATTTTTATTTGTAGGAAGGTGAGTCCTGAATAAGGGGATTAGTCTTGAACCTTTTAATGTTTATATGAAAAATAGCAGTCCTATTGTGGGATGTGTAATTGTTGAATAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E393903" ref_strand="+" ref_description="SGN-E393903 [TUS-14-G2](-)">
      <seq>gcaatatgcagcccaatttcaagggaatgtgtccaaggaatgttgacccaagaatagccattgacatggatcccaaaactccaaggacatttgacaataattactacaaaaatttacaacaaggtatgggcctattcacgtcagatcaagtgttgtatacagacaaaaggtccaagggaactgtggatctttgggccagtaactcaaaatcattccaaaatgcttttgtaactgcaatgacaaaactgggccgagttggtgtgaagacggggaggaacggaaatattcggtttgattgtggaagaatgaattgaagtgacattttacacaaatggccaatacttatagattctgtcccagttagcttaatggattaaatttgtcgaataaattaaaattttattttaattacgcaaaaattagttcgttgagtgttgtcaaggataggagtttatttatatttttatttgtaggaaggtgagtcctgaataaggggattagtcttgaaccttctaatgtttatatgaaaaataacagtcctattgtgggatgtgtaattgttgaataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="52775" stop="51606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52475" g_stop="51906" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="571" r_length="571" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E393903" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52475" e_stop="51906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATATGCAGCCCAATTACAAGGG-ATGTGTCCAAGGAATGTTGACCCAAGAATAGCCATTGACATGGATCCCAAAACTCCAAGGACATTTGACAATAATTACTACAAAAATTTACAACAAGGTATGGGCCTATTCACGTCAGATCAAGTGTTGTATACAGACAAAAGGTCCAAGGGAACTGTGGATCTTTGGGCCAGTAACTCAAAATCATTCCAAAATGCTTTTGTAACTGCAATGACAAAACTGGGCCGAGTTGGTGTGAAGACGGGGAGGAACGGAAATATTCGGTTTGATTGTGGAAGAATGAATTGAAGTGACATTTTACACAAATGGCCAATACTTATAGATTCTGTCCCAGTTAGCTTAATGGATTAAATTTGTCGAATAAATTAAAATTTTATTTTAATTACGCAAAAATTAGTTCGTTGAGTGTTGTCAAGGATAGGAGTTTATTTATATTTTTATTTGTAGGAAGGTGAGTCCTGAATAAGGGGATTAGTCTTGAACCTTCTAATGTTTATATGAAAAATAACAGTCCTATTGTGGGATGTGTAATTGTTGAATAAAAA</genome_strand>
        <mrna_strand>GCAATATGCAGCCCAATTTCAAGGGAATGTGTCCAAGGAATGTTGACCCAAGAATAGCCATTGACATGGATCCCAAAACTCCAAGGACATTTGACAATAATTACTACAAAAATTTACAACAAGGTATGGGCCTATTCACGTCAGATCAAGTGTTGTATACAGACAAAAGGTCCAAGGGAACTGTGGATCTTTGGGCCAGTAACTCAAAATCATTCCAAAATGCTTTTGTAACTGCAATGACAAAACTGGGCCGAGTTGGTGTGAAGACGGGGAGGAACGGAAATATTCGGTTTGATTGTGGAAGAATGAATTGAAGTGACATTTTACACAAATGGCCAATACTTATAGATTCTGTCCCAGTTAGCTTAATGGATTAAATTTGTCGAATAAATTAAAATTTTATTTTAATTACGCAAAAATTAGTTCGTTGAGTGTTGTCAAGGATAGGAGTTTATTTATATTTTTATTTGTAGGAAGGTGAGTCCTGAATAAGGGGATTAGTCTTGAACCTTCTAATGTTTATATGAAAAATAACAGTCCTATTGTGGGATGTGTAATTGTTGAATAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E202467" ref_strand="+" ref_description="SGN-E202467 [cLEC-6-I2]">
      <seq>acaattacacatcccacaataggactgttatttttcatataaacattagaaggttcaagactaatccccttattcaggactcaccttcctacaaataaaaatataaataaactcctatccttgacaacactcaacgaactaatttttgcgtaattaaaataaaattttaatttattcgacaaatttaatccattaagctaactgggacagaatctataagtattggccatttgtgtaaaatgtcacttcaattcattcttccacaatcaaaccgaatatttccgttcctccccgtcttcacaccaactcggcccagttttgtcattgcagttacaaaagcattttggaatgattttgagttactggcccaaagatccacagttcccttggacctttagtctgtatacaacacttgatctgacgtgaataggcccataccttgttgtaaatttttgtagtaattattgtcaaatgtccttggagttttgggatccatgtcaatggctattcttgggtcaacattccttggacacatcccttgtaattgggctgcatattgcttgttaagggttgggtctattggatttttagggctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="51616" stop="52812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51916" g_stop="52512" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="597" r_length="597" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E202467" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202467" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51916" e_stop="52512"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATTACACATCCCACAATAGGACTGTTATTTTTCATATAAACATTAGAAGGTTCAAGACTAATCCCCTTATTCAGGACTCACCTTCCTACAAATAAAAATATAAATAAACTCCTATCCTTGACAACACTCAACGAACTAATTTTTGCGTAATTAAAATAAAATTTTAATTTATTCGACAAATTTAATCCATTAAGCTAACTGGGACAGAATCTATAAGTATTGGCCATTTGTGTAAAATGTCACTTCAATTCATTCTTCCACAATCAAACCGAATATTTCCGTTCCTCCCCGTCTTCACACCAACTCGGCCCAGTTTTGTCATTGCAGTTACAAAAGCATTTTGGAATGATTTTGAGTTACTGGCCCAAAGATCCACAGTTCCCTTGGACCTTTTGTCTGTATACAACACTTGATCTGACGTGAATAGGCCCATACCTTGTTGTAAATTTTTGTAGTAATTATTGTCAAATGTCCTTGGAGTTTTGGGATCCATGTCAATGGCTATTCTTGGGTCAACATTCCTTGGACACATCCCTTGTAATTGGGCTGCATATTGCTTGTTAAGGGTTGGGTCTATTGGATTTTTAGGGCTGA</genome_strand>
        <mrna_strand>ACAATTACACATCCCACAATAGGACTGTTATTTTTCATATAAACATTAGAAGGTTCAAGACTAATCCCCTTATTCAGGACTCACCTTCCTACAAATAAAAATATAAATAAACTCCTATCCTTGACAACACTCAACGAACTAATTTTTGCGTAATTAAAATAAAATTTTAATTTATTCGACAAATTTAATCCATTAAGCTAACTGGGACAGAATCTATAAGTATTGGCCATTTGTGTAAAATGTCACTTCAATTCATTCTTCCACAATCAAACCGAATATTTCCGTTCCTCCCCGTCTTCACACCAACTCGGCCCAGTTTTGTCATTGCAGTTACAAAAGCATTTTGGAATGATTTTGAGTTACTGGCCCAAAGATCCACAGTTCCCTTGGACCTTTAGTCTGTATACAACACTTGATCTGACGTGAATAGGCCCATACCTTGTTGTAAATTTTTGTAGTAATTATTGTCAAATGTCCTTGGAGTTTTGGGATCCATGTCAATGGCTATTCTTGGGTCAACATTCCTTGGACACATCCCTTGTAATTGGGCTGCATATTGCTTGTTAAGGGTTGGGTCTATTGGATTTTTAGGGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E378367" ref_strand="+" ref_description="SGN-E378367 [TUS-21-D9]">
      <seq>aagcatcgaatgtggaagggaagctaccaaaaccaacattcaatctcaatcaactcaattctatgtttgcctctcatggtctaactcaggctgacatgatcgccctttctgcggcccattctgttggtttttctcattgtggcaaattttccaaccggatctacaacttcagccctaaaaatccaatagacccaacccttaacaagcaatatgcagcccaattacaagggatgtgtccaaggaatgttgacccaagaatagccattgacatggatcccaaaactccaaggacatttgacaataattactacaaaaatttacaacaaggtatgggcctattcacgtcagatcaagtgttgtatacagacaaaaggtccaagggaactgtggatctttgggccagtaactcaaaatcattccaaaatgcttttgtaactgcaatgacaaaactgggccgagttggtgtgaagacggggaggaacggaaatattcggtttgattgtggaagaatgaattgaagtgacattttacacaaatggccaatacttatagattctgtcccagttagcttaatggattaaatttgtcgaataaattaaaattttattttaattacgcaaaaattagttcgttgagtgttgtcaaggataggagtttatttatatttttatttgtaggaaggtgagtcctgaataaggggattagtcttgaaccttctaatgtttatatgaaaaataacagtcctattgtgggatgtgtaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="53826" stop="51618"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53526" g_stop="53416" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53415" i_stop="52570" i_length="846">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52569" g_stop="51918" g_length="652"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="763" r_length="652" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E378367" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378367" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53526" e_stop="53416"/>
          <exon e_start="52569" e_stop="51918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTGGTAATTCTGATGTTAATTACTTTCTTTATATAACTATTAATTAATTGTTAATTGTTATATTTAGTAGTTGATCTAGCTAGCTGTTTTGAAAATTCTGCTTTCAATATCTGAAGCAAGCAAGCAGATTTTAAAACAAATATAATATATAAAAAGGTTTATTTCGCTAAAGAAAATAAAATGCTCTATATAGATAGTAATATATTACTCAGTTTCTTTTTTAGTAAGTAGAAGAGAACTAGATTATAAATTTCAAAAGTTTATTTTTTTAAAAAAAAATTATGTACTAAGTCAAACTAACTTATACTCCTTCGATTCACAAATAGTTATACTAAAAAGGATGTTCAAGATTAATTGTCAATTTAAACGTTCAAGAAATAATTAGTTTTTTTTCTTAATTCTACCCTTAATAATTACTTCATTTTAATCAATTGAAAAACTATGTAGACTTTTGATATTCTTGCTATTATAAAATTATATTAGTCAAATTATACTTTGCATTAAATTTTTCTTGTCGAAAGTACATGATTTTACTCAGATAAATAATTGTGGACGGAGAAAATATGAAATAGGATTATGAGAGTATTAAATATTATTCAAACACTCGAATCATGGTCTTAAATTCCTTTTAATAAGTCTCTTATCATTTTTCATTTGACCTTTTGCTTTTTAGCACGTGTTATTGATTCAGACGTAACCATTACTCAATTATTTGGTTCATTATACTCCAGCCAGCTCAGTAGACAAAAGGGAAAAAAATAAGTCCAGACATTATCATGAGCATCTTCCACAATGTAATAATTTTATATGCTTGATCGAGAAATTAAGATCTCTTGCTCACTTATGCAGCGGCCCATTCTGTTGGTTTTTCTCATTGTGGCAAATTTTCCAACCGGATCTACAACTTCAGCCCTAAAAATCCAATAGACCCAACCCTTAACAAGCAATATGCAGCCCAATTACAAGGGATGTGTCCAAGGAATGTTGACCCAAGAATAGCCATTGACATGGATCCCAAAACTCCAAGGACATTTGACAATAATTACTACAAAAATTTACAACAAGGTATGGGCCTATTCACGTCAGATCAAGTGTTGTATACAGACAAAAGGTCCAAGGGAACTGTGGATCTTTGGGCCAGTAACTCAAAATCATTCCAAAATGCTTTTGTAACTGCAATGACAAAACTGGGCCGAGTTGGTGTGAAGACGGGGAGGAACGGAAATATTCGGTTTGATTGTGGAAGAATGAATTGAAGTGACATTTTACACAAATGGCCAATACTTATAGATTCTGTCCCAGTTAGCTTAATGGATTAAATTTGTCGAATAAATTAAAATTTTATTTTAATTACGCAAAAATTAGTTCGTTGAGTGTTGTCAAGGATAGGAGTTTATTTATATTTTTATTTGTAGGAAGGTGAGTCCTGAATAAGGGGATTAGTCTTGAACCTTCTAATGTTTATATGAAAAATAACAGTCCTATTGTGGGATGTGTAATT</genome_strand>
        <mrna_strand>AAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCCCATTCTGTTGGTTTTTCTCATTGTGGCAAATTTTCCAACCGGATCTACAACTTCAGCCCTAAAAATCCAATAGACCCAACCCTTAACAAGCAATATGCAGCCCAATTACAAGGGATGTGTCCAAGGAATGTTGACCCAAGAATAGCCATTGACATGGATCCCAAAACTCCAAGGACATTTGACAATAATTACTACAAAAATTTACAACAAGGTATGGGCCTATTCACGTCAGATCAAGTGTTGTATACAGACAAAAGGTCCAAGGGAACTGTGGATCTTTGGGCCAGTAACTCAAAATCATTCCAAAATGCTTTTGTAACTGCAATGACAAAACTGGGCCGAGTTGGTGTGAAGACGGGGAGGAACGGAAATATTCGGTTTGATTGTGGAAGAATGAATTGAAGTGACATTTTACACAAATGGCCAATACTTATAGATTCTGTCCCAGTTAGCTTAATGGATTAAATTTGTCGAATAAATTAAAATTTTATTTTAATTACGCAAAAATTAGTTCGTTGAGTGTTGTCAAGGATAGGAGTTTATTTATATTTTTATTTGTAGGAAGGTGAGTCCTGAATAAGGGGATTAGTCTTGAACCTTCTAATGTTTATATGAAAAATAACAGTCCTATTGTGGGATGTGTAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E607504" ref_strand="+" ref_description="SGN-E607504 [23471]">
      <seq>attaccacatcccacaataggactgttatttttcatataaacattagaaggttcaagtctagtccccttattcaggactcaccttcccacaaataaaaatataaataaaattctatccttgataacactcaatgaactaatttttgcctttaaaagtaattaaataattttttttattttagtcgacaaatttaattcattaagctaactgggacagaatctaaatagtggccatttgtgcaaaatgtcccttcagttcattcttccacaatcaaaccgaatatttccgttcctccccgtcttcacaccaactcggcccagttttgtcattgcagttgtaaaagcattttggaatgattttgagttactggcccagaggtccacagttcccttggaccttttgtctgtatacagcacttgatctgatgtgaataggcccataccttgttgtaaatttttgtagtaattattgtcaaatgtccttggagttttgggatccatgtcaatggctatccttggatcaacattccttggacacatcccttgtaattgggctgcatattgcttgttaagggttgggtctattggattttgagggctgaagttgtagatccggttggaaaacttgccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="51619" stop="52842"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51919" g_stop="52542" g_length="624"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="632" r_length="632" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E607504" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E607504" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51919" e_stop="52542"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTA-CACATCCCACAATAGGACTGTTATTTTTCATATAAACATTAGAAGGTTCAAGACTAATCCCCTTATTCAGGACTCACCTTCCTACAAATAAAAATATAAATAAACTCCTATCCTTGACAACACTCAACGAACTAATTTTTG-C-GT--AA-T--TAAAATAAAA-TTTTAA-TTTATTCGACAAATTTAATCCATTAAGCTAACTGGGACAGAATCTATAAGTATTGGCCATTTGTGTAAAATGTCACTTCAATTCATTCTTCCACAATCAAACCGAATATTTCCGTTCCTCCCCGTCTTCACACCAACTCGGCCCAGTTTTGTCATTGCAGTTACAAAAGCATTTTGGAATGATTTTGAGTTACTGGCCCAAAGATCCACAGTTCCCTTGGACCTTTTGTCTGTATACAACACTTGATCTGACGTGAATAGGCCCATACCTTGTTGTAAATTTTTGTAGTAATTATTGTCAAATGTCCTTGGAGTTTTGGGATCCATGTCAATGGCTATTCTTGGGTCAACATTCCTTGGACACATCCCTTGTAATTGGGCTGCATATTGCTTGTTAAGGGTTGGGTCTATTGGATTTTTAGGGCTGAAGTTGTAGATCCGGTTGGAAAATTTGCCAC</genome_strand>
        <mrna_strand>ATTACCACATCCCACAATAGGACTGTTATTTTTCATATAAACATTAGAAGGTTCAAGTCTAGTCCCCTTATTCAGGACTCACCTTCCCACAAATAAAAATATAAATAAAATTCTATCCTTGATAACACTCAATGAACTAATTTTTGCCTTTAAAAGTAATTAAATAATTTTTTTTATTTTAGTCGACAAATTTAATTCATTAAGCTAACTGGGACAGAATCTA-AA-TAGTGGCCATTTGTGCAAAATGTCCCTTCAGTTCATTCTTCCACAATCAAACCGAATATTTCCGTTCCTCCCCGTCTTCACACCAACTCGGCCCAGTTTTGTCATTGCAGTTGTAAAAGCATTTTGGAATGATTTTGAGTTACTGGCCCAGAGGTCCACAGTTCCCTTGGACCTTTTGTCTGTATACAGCACTTGATCTGATGTGAATAGGCCCATACCTTGTTGTAAATTTTTGTAGTAATTATTGTCAAATGTCCTTGGAGTTTTGGGATCCATGTCAATGGCTATCCTTGGATCAACATTCCTTGGACACATCCCTTGTAATTGGGCTGCATATTGCTTGTTAAGGGTTGGGTCTATTGGATTTTGAGGGCTGAAGTTGTAGATCCGGTTGGAAAACTTGCCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E212656" ref_strand="+" ref_description="SGN-E212656 [cLEC-73-K5]">
      <seq>ttacaagggatgtgtccaaggaatgttgacccaagaatagccattgacatggatcccaaaactccaaggacatttgacaataattactacaaaaatttacaacaaggtatgggcctattcacgtcagatcaagtgttgtatacagacaaaaggtccaagggaactgtggatctttgggccagtaactcaaaatcattccaaaatgcttttgtaactgcaatgacaaaactgggccgagttggtgtgaagacggggaggaacggaaatattcggtttgattgtggaagaatgaattgaagtgacattttacacaaatggccaatacttatagattctgtcccagttagcttaatggattaaatttgtcgaataaattaaaattttattttaattacgcaaaaattagttcgttgagtgttgtcaaggataggagtttatttatatttttatttgtaggaaggtgagtcctgaataaggggattagtcttgaaccttctaatgtttatatgaaaaataacagtcctattgtgggaaaannnaaaaaaaaaaaaaaaaaaaaaaanaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="52759" stop="51627"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52459" g_stop="51928" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="532" r_length="532" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="540" polyA_stop="574"/>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E212656" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52459" e_stop="51928"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACAAGGGATGTGTCCAAGGAATGTTGACCCAAGAATAGCCATTGACATGGATCCCAAAACTCCAAGGACATTTGACAATAATTACTACAAAAATTTACAACAAGGTATGGGCCTATTCACGTCAGATCAAGTGTTGTATACAGACAAAAGGTCCAAGGGAACTGTGGATCTTTGGGCCAGTAACTCAAAATCATTCCAAAATGCTTTTGTAACTGCAATGACAAAACTGGGCCGAGTTGGTGTGAAGACGGGGAGGAACGGAAATATTCGGTTTGATTGTGGAAGAATGAATTGAAGTGACATTTTACACAAATGGCCAATACTTATAGATTCTGTCCCAGTTAGCTTAATGGATTAAATTTGTCGAATAAATTAAAATTTTATTTTAATTACGCAAAAATTAGTTCGTTGAGTGTTGTCAAGGATAGGAGTTTATTTATATTTTTATTTGTAGGAAGGTGAGTCCTGAATAAGGGGATTAGTCTTGAACCTTCTAATGTTTATATGAAAAATAACAGTCCTATTGTGGG</genome_strand>
        <mrna_strand>TTACAAGGGATGTGTCCAAGGAATGTTGACCCAAGAATAGCCATTGACATGGATCCCAAAACTCCAAGGACATTTGACAATAATTACTACAAAAATTTACAACAAGGTATGGGCCTATTCACGTCAGATCAAGTGTTGTATACAGACAAAAGGTCCAAGGGAACTGTGGATCTTTGGGCCAGTAACTCAAAATCATTCCAAAATGCTTTTGTAACTGCAATGACAAAACTGGGCCGAGTTGGTGTGAAGACGGGGAGGAACGGAAATATTCGGTTTGATTGTGGAAGAATGAATTGAAGTGACATTTTACACAAATGGCCAATACTTATAGATTCTGTCCCAGTTAGCTTAATGGATTAAATTTGTCGAATAAATTAAAATTTTATTTTAATTACGCAAAAATTAGTTCGTTGAGTGTTGTCAAGGATAGGAGTTTATTTATATTTTTATTTGTAGGAAGGTGAGTCCTGAATAAGGGGATTAGTCTTGAACCTTCTAATGTTTATATGAAAAATAACAGTCCTATTGTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E210765" ref_strand="+" ref_description="SGN-E210765 [cLEC-68-C20]">
      <seq>tcgctttagccaccagagatgtcattcagctgtctgggggaccatggtacccagtggaattaggaaggcttgatgggttcacatcaaaagcatcgaatgtggaagggaagctaccaaaaccaacattcaatctcaatcaactcaattctatgtttgcctctcatggtctaactcaggctgacatgatcgccctttctgcggcccattctgttggtttttctcattgtggcaaattttccaaccggatctacaacttcagccctaaaaatccaatagacccaacccttaacaagcaatatgcagcccaattacaagggatgtgtccaaggaatgttgacccaagaatagccattgacatggatcccaaaactccaaggacatttgacaataattactacaaaaatttacaacaaggtatgggcctattcacgtcagatcaagtgttgtatacagacaaaaggtccaagggaactgtggatctttgggccagtaactcaaaatcattccaaaatgcttttgtaactgcaatgacaaaactgggccgagttggtgtgaagacggggaggaacggaaatattcggtttgattgtggaagaatgaattgaagtgacattttacacaaatggccaatacttatagattctgtcccagttagcttaatggattaaatttgtcgaataaattaaaattttattttaaattacgcaaaattagttcgttgagtggtgtcaaggatangagtttatttatatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54017" stop="51713"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53717" g_stop="53686" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53581" g_stop="53416" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="198" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53415" i_stop="52570" i_length="846">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52569" g_stop="52013" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="755" r_length="557" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E210765" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>755</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53717" e_stop="53686"/>
          <exon e_start="53581" e_stop="53416"/>
          <exon e_start="52569" e_stop="52013"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTGGTAATTCTGATGTTAATTACTTTCTTTATATAACTATTAATTAATTGTTAATTGTTATATTTAGTAGTTGATCTAGCTAGCTGTTTTGAAAATTCTGCTTTCAATATCTGAAGCAAGCAAGCAGATTTTAAAACAAATATAATATATAAAAAGGTTTATTTCGCTAAAGAAAATAAAATGCTCTATATAGATAGTAATATATTACTCAGTTTCTTTTTTAGTAAGTAGAAGAGAACTAGATTATAAATTTCAAAAGTTTATTTTTTTAAAAAAAAATTATGTACTAAGTCAAACTAACTTATACTCCTTCGATTCACAAATAGTTATACTAAAAAGGATGTTCAAGATTAATTGTCAATTTAAACGTTCAAGAAATAATTAGTTTTTTTTCTTAATTCTACCCTTAATAATTACTTCATTTTAATCAATTGAAAAACTATGTAGACTTTTGATATTCTTGCTATTATAAAATTATATTAGTCAAATTATACTTTGCATTAAATTTTTCTTGTCGAAAGTACATGATTTTACTCAGATAAATAATTGTGGACGGAGAAAATATGAAATAGGATTATGAGAGTATTAAATATTATTCAAACACTCGAATCATGGTCTTAAATTCCTTTTAATAAGTCTCTTATCATTTTTCATTTGACCTTTTGCTTTTTAGCACGTGTTATTGATTCAGACGTAACCATTACTCAATTATTTGGTTCATTATACTCCAGCCAGCTCAGTAGACAAAAGGGAAAAAAATAAGTCCAGACATTATCATGAGCATCTTCCACAATGTAATAATTTTATATGCTTGATCGAGAAATTAAGATCTCTTGCTCACTTATGCAGCGGCCCATTCTGTTGGTTTTTCTCATTGTGGCAAATTTTCCAACCGGATCTACAACTTCAGCCCTAAAAATCCAATAGACCCAACCCTTAACAAGCAATATGCAGCCCAATTACAAGGGATGTGTCCAAGGAATGTTGACCCAAGAATAGCCATTGACATGGATCCCAAAACTCCAAGGACATTTGACAATAATTACTACAAAAATTTACAACAAGGTATGGGCCTATTCACGTCAGATCAAGTGTTGTATACAGACAAAAGGTCCAAGGGAACTGTGGATCTTTGGGCCAGTAACTCAAAATCATTCCAAAATGCTTTTGTAACTGCAATGACAAAACTGGGCCGAGTTGGTGTGAAGACGGGGAGGAACGGAAATATTCGGTTTGATTGTGGAAGAATGAATTGAAGTGACATTTTACACAAATGGCCAATACTTATAGATTCTGTCCCAGTTAGCTTAATGGATTAAATTTGTCGAATAAATTAAAATTTTATTTT-AATTACGCAAAAATTAGTTCGTTGAGTGTTGTCAAGGATAGGAGTTTATTTATATTTT</genome_strand>
        <mrna_strand>TCGCTTTAGCCACCAGAGATGTCATTCAGCTG........................................................................................................TCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCCCATTCTGTTGGTTTTTCTCATTGTGGCAAATTTTCCAACCGGATCTACAACTTCAGCCCTAAAAATCCAATAGACCCAACCCTTAACAAGCAATATGCAGCCCAATTACAAGGGATGTGTCCAAGGAATGTTGACCCAAGAATAGCCATTGACATGGATCCCAAAACTCCAAGGACATTTGACAATAATTACTACAAAAATTTACAACAAGGTATGGGCCTATTCACGTCAGATCAAGTGTTGTATACAGACAAAAGGTCCAAGGGAACTGTGGATCTTTGGGCCAGTAACTCAAAATCATTCCAAAATGCTTTTGTAACTGCAATGACAAAACTGGGCCGAGTTGGTGTGAAGACGGGGAGGAACGGAAATATTCGGTTTGATTGTGGAAGAATGAATTGAAGTGACATTTTACACAAATGGCCAATACTTATAGATTCTGTCCCAGTTAGCTTAATGGATTAAATTTGTCGAATAAATTAAAATTTTATTTTAAATTACGC-AAAATTAGTTCGTTGAGTGGTGTCAAGGATANGAGTTTATTTATATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E377750" ref_strand="+" ref_description="SGN-E377750 [TUS-21-D9]">
      <seq>aagcatcgaatgtggaagggaagctaccaaaaccaacattcaatctcaatcaactcaattctatgtttgcctctcatggtctaactcaggctgacatgatcgccctttctgcggcccattctgttggtttttctcattgtggcaaattttccaaccggatctacaacttcagccctaaaaatccaatagacccaacccttaacaagcaatatgcagcccaattacaagggatgtgtccaaggaatgttgacccaagaatagccattgacatggatcccaaaactccaaggacatttgacaataattactacaaaaatttacaacaaggtatgggcctattcacgtcagatcaagtgttgtatacagacaaaaggtccaagggaactgtggatctttgggccagtaactcaaaatcattccaaaatgcttttgtaactgcaatgacaaaactgggccgagttggtgtgaagacggggaggaacggaaatattcggtttgattgtggaagaatgaattgaagtgacattttacacaaatggccaatacttatagattctgtcccagttagcttaatggattaaatttgtcgaataaattaaaattttattttaattacgcaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="53826" stop="51757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53526" g_stop="53416" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53415" i_stop="52570" i_length="846">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52569" g_stop="52057" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="624" r_length="513" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E377750" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377750" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53526" e_stop="53416"/>
          <exon e_start="52569" e_stop="52057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTGGTAATTCTGATGTTAATTACTTTCTTTATATAACTATTAATTAATTGTTAATTGTTATATTTAGTAGTTGATCTAGCTAGCTGTTTTGAAAATTCTGCTTTCAATATCTGAAGCAAGCAAGCAGATTTTAAAACAAATATAATATATAAAAAGGTTTATTTCGCTAAAGAAAATAAAATGCTCTATATAGATAGTAATATATTACTCAGTTTCTTTTTTAGTAAGTAGAAGAGAACTAGATTATAAATTTCAAAAGTTTATTTTTTTAAAAAAAAATTATGTACTAAGTCAAACTAACTTATACTCCTTCGATTCACAAATAGTTATACTAAAAAGGATGTTCAAGATTAATTGTCAATTTAAACGTTCAAGAAATAATTAGTTTTTTTTCTTAATTCTACCCTTAATAATTACTTCATTTTAATCAATTGAAAAACTATGTAGACTTTTGATATTCTTGCTATTATAAAATTATATTAGTCAAATTATACTTTGCATTAAATTTTTCTTGTCGAAAGTACATGATTTTACTCAGATAAATAATTGTGGACGGAGAAAATATGAAATAGGATTATGAGAGTATTAAATATTATTCAAACACTCGAATCATGGTCTTAAATTCCTTTTAATAAGTCTCTTATCATTTTTCATTTGACCTTTTGCTTTTTAGCACGTGTTATTGATTCAGACGTAACCATTACTCAATTATTTGGTTCATTATACTCCAGCCAGCTCAGTAGACAAAAGGGAAAAAAATAAGTCCAGACATTATCATGAGCATCTTCCACAATGTAATAATTTTATATGCTTGATCGAGAAATTAAGATCTCTTGCTCACTTATGCAGCGGCCCATTCTGTTGGTTTTTCTCATTGTGGCAAATTTTCCAACCGGATCTACAACTTCAGCCCTAAAAATCCAATAGACCCAACCCTTAACAAGCAATATGCAGCCCAATTACAAGGGATGTGTCCAAGGAATGTTGACCCAAGAATAGCCATTGACATGGATCCCAAAACTCCAAGGACATTTGACAATAATTACTACAAAAATTTACAACAAGGTATGGGCCTATTCACGTCAGATCAAGTGTTGTATACAGACAAAAGGTCCAAGGGAACTGTGGATCTTTGGGCCAGTAACTCAAAATCATTCCAAAATGCTTTTGTAACTGCAATGACAAAACTGGGCCGAGTTGGTGTGAAGACGGGGAGGAACGGAAATATTCGGTTTGATTGTGGAAGAATGAATTGAAGTGACATTTTACACAAATGGCCAATACTTATAGATTCTGTCCCAGTTAGCTTAATGGATTAAATTTGTCGAATAAATTAAAATTTTATTTTAATTACGCAAAAAT</genome_strand>
        <mrna_strand>AAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCCCATTCTGTTGGTTTTTCTCATTGTGGCAAATTTTCCAACCGGATCTACAACTTCAGCCCTAAAAATCCAATAGACCCAACCCTTAACAAGCAATATGCAGCCCAATTACAAGGGATGTGTCCAAGGAATGTTGACCCAAGAATAGCCATTGACATGGATCCCAAAACTCCAAGGACATTTGACAATAATTACTACAAAAATTTACAACAAGGTATGGGCCTATTCACGTCAGATCAAGTGTTGTATACAGACAAAAGGTCCAAGGGAACTGTGGATCTTTGGGCCAGTAACTCAAAATCATTCCAAAATGCTTTTGTAACTGCAATGACAAAACTGGGCCGAGTTGGTGTGAAGACGGGGAGGAACGGAAATATTCGGTTTGATTGTGGAAGAATGAATTGAAGTGACATTTTACACAAATGGCCAATACTTATAGATTCTGTCCCAGTTAGCTTAATGGATTAAATTTGTCGAATAAATTAAAATTTTATTTTAATTACGCAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E205865" ref_strand="+" ref_description="SGN-E205865 [cLEC-20-H15]">
      <seq>tcgctttagccaccagagatgtcattcagctgtctgggggaccatggtacccagtggaattaggaaggcttgatgggttcacatcaaaagcatcgaatgtggaagggaagctaccaaaaccaacattcaatctcaatcaactcaattctatgtttgcctctcatggtctaactcaggctgacatgatcgccctttctgcggcccattctgttggtttttctcattgtggcaaattttccaaccggatctacaacttcagccctaaaaatccaatagacccaacccttaacaagcaatatgcagcccaattacaagggatgtgtccaaggaatgttgacccaagaatagccattgacatggatcccaaaactccaaggacatttgacaataattactacaaaaatttacaacaaggtatgggcctattcacgtcagatcaagtgttgtatacagacaaaaggtccaagggaactgtggatctttgggccagtaactcaaaatcattccaaaatgcttttgtaactgcaatgacaaaactgggccgagttggtgtgaagacggggaggaacggaaatattcggtttgattgtggaagaatgaattgaagtgacattttacacaaatggccaatacttatagattctgtcccagttagcttaatggattaaatttgtcgaataaattaaaattttattttaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54017" stop="51769"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53717" g_stop="53686" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53581" g_stop="53416" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="198" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53415" i_stop="52570" i_length="846">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52569" g_stop="52064" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="704" r_length="506" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E205865" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53717" e_stop="53686"/>
          <exon e_start="53581" e_stop="53416"/>
          <exon e_start="52569" e_stop="52064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTGGTAATTCTGATGTTAATTACTTTCTTTATATAACTATTAATTAATTGTTAATTGTTATATTTAGTAGTTGATCTAGCTAGCTGTTTTGAAAATTCTGCTTTCAATATCTGAAGCAAGCAAGCAGATTTTAAAACAAATATAATATATAAAAAGGTTTATTTCGCTAAAGAAAATAAAATGCTCTATATAGATAGTAATATATTACTCAGTTTCTTTTTTAGTAAGTAGAAGAGAACTAGATTATAAATTTCAAAAGTTTATTTTTTTAAAAAAAAATTATGTACTAAGTCAAACTAACTTATACTCCTTCGATTCACAAATAGTTATACTAAAAAGGATGTTCAAGATTAATTGTCAATTTAAACGTTCAAGAAATAATTAGTTTTTTTTCTTAATTCTACCCTTAATAATTACTTCATTTTAATCAATTGAAAAACTATGTAGACTTTTGATATTCTTGCTATTATAAAATTATATTAGTCAAATTATACTTTGCATTAAATTTTTCTTGTCGAAAGTACATGATTTTACTCAGATAAATAATTGTGGACGGAGAAAATATGAAATAGGATTATGAGAGTATTAAATATTATTCAAACACTCGAATCATGGTCTTAAATTCCTTTTAATAAGTCTCTTATCATTTTTCATTTGACCTTTTGCTTTTTAGCACGTGTTATTGATTCAGACGTAACCATTACTCAATTATTTGGTTCATTATACTCCAGCCAGCTCAGTAGACAAAAGGGAAAAAAATAAGTCCAGACATTATCATGAGCATCTTCCACAATGTAATAATTTTATATGCTTGATCGAGAAATTAAGATCTCTTGCTCACTTATGCAGCGGCCCATTCTGTTGGTTTTTCTCATTGTGGCAAATTTTCCAACCGGATCTACAACTTCAGCCCTAAAAATCCAATAGACCCAACCCTTAACAAGCAATATGCAGCCCAATTACAAGGGATGTGTCCAAGGAATGTTGACCCAAGAATAGCCATTGACATGGATCCCAAAACTCCAAGGACATTTGACAATAATTACTACAAAAATTTACAACAAGGTATGGGCCTATTCACGTCAGATCAAGTGTTGTATACAGACAAAAGGTCCAAGGGAACTGTGGATCTTTGGGCCAGTAACTCAAAATCATTCCAAAATGCTTTTGTAACTGCAATGACAAAACTGGGCCGAGTTGGTGTGAAGACGGGGAGGAACGGAAATATTCGGTTTGATTGTGGAAGAATGAATTGAAGTGACATTTTACACAAATGGCCAATACTTATAGATTCTGTCCCAGTTAGCTTAATGGATTAAATTTGTCGAATAAATTAAAATTTTATTTTAATTACG</genome_strand>
        <mrna_strand>TCGCTTTAGCCACCAGAGATGTCATTCAGCTG........................................................................................................TCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCCCATTCTGTTGGTTTTTCTCATTGTGGCAAATTTTCCAACCGGATCTACAACTTCAGCCCTAAAAATCCAATAGACCCAACCCTTAACAAGCAATATGCAGCCCAATTACAAGGGATGTGTCCAAGGAATGTTGACCCAAGAATAGCCATTGACATGGATCCCAAAACTCCAAGGACATTTGACAATAATTACTACAAAAATTTACAACAAGGTATGGGCCTATTCACGTCAGATCAAGTGTTGTATACAGACAAAAGGTCCAAGGGAACTGTGGATCTTTGGGCCAGTAACTCAAAATCATTCCAAAATGCTTTTGTAACTGCAATGACAAAACTGGGCCGAGTTGGTGTGAAGACGGGGAGGAACGGAAATATTCGGTTTGATTGTGGAAGAATGAATTGAAGTGACATTTTACACAAATGGCCAATACTTATAGATTCTGTCCCAGTTAGCTTAATGGATTAAATTTGTCGAATAAATTAAAATTTTATTTTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E213118" ref_strand="+" ref_description="SGN-E213118 [cLEC-72-E9]">
      <seq>tcgctttagccaccagagatgtcattcagctgtctgggggaccatggtacccagtggaattaggaaggcttgatgggttcacatcaaaagcatcgaatgtggaagggaagctaccaaaaccaacattcaatctcaatcaactcaattctatgtttgcctctcatggtctaactcaggctgacatgatcgccctttctgcggcccattctgttggtttttctcattgtggcaaattttccaaccggatctacaacttcagccctaaaaatccaatagacccaacccttaacaagcaatatgcagcccaattacaagggatgtgtccaaggaatgttgacccaagaatagccattgacatggatcccaaaactccaaggacatttgacaataattactacaaaaatttacaacaaggtatgggcctattcacgtcagatcaagtgttgtatacagacaaaaggtccaagggaactgtggatctttgggccagtaactcaaaatcattccaaaatgcttttgtaactgcaatgacaaaactgggccgagttggtgtgaagacggggaggaacggaaatattcggtttgattgtggaagaatgaattgaagtgacattttacacaaatgggccatacttatagattctgtcccagntagcttaatggataaatttgtcgaaataattaaaatttattttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54017" stop="51769"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53717" g_stop="53686" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53581" g_stop="53416" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="198" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53415" i_stop="52570" i_length="846">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52569" g_stop="52068" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="698" r_length="500" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E213118" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213118" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53717" e_stop="53686"/>
          <exon e_start="53581" e_stop="53416"/>
          <exon e_start="52569" e_stop="52068"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTGGTAATTCTGATGTTAATTACTTTCTTTATATAACTATTAATTAATTGTTAATTGTTATATTTAGTAGTTGATCTAGCTAGCTGTTTTGAAAATTCTGCTTTCAATATCTGAAGCAAGCAAGCAGATTTTAAAACAAATATAATATATAAAAAGGTTTATTTCGCTAAAGAAAATAAAATGCTCTATATAGATAGTAATATATTACTCAGTTTCTTTTTTAGTAAGTAGAAGAGAACTAGATTATAAATTTCAAAAGTTTATTTTTTTAAAAAAAAATTATGTACTAAGTCAAACTAACTTATACTCCTTCGATTCACAAATAGTTATACTAAAAAGGATGTTCAAGATTAATTGTCAATTTAAACGTTCAAGAAATAATTAGTTTTTTTTCTTAATTCTACCCTTAATAATTACTTCATTTTAATCAATTGAAAAACTATGTAGACTTTTGATATTCTTGCTATTATAAAATTATATTAGTCAAATTATACTTTGCATTAAATTTTTCTTGTCGAAAGTACATGATTTTACTCAGATAAATAATTGTGGACGGAGAAAATATGAAATAGGATTATGAGAGTATTAAATATTATTCAAACACTCGAATCATGGTCTTAAATTCCTTTTAATAAGTCTCTTATCATTTTTCATTTGACCTTTTGCTTTTTAGCACGTGTTATTGATTCAGACGTAACCATTACTCAATTATTTGGTTCATTATACTCCAGCCAGCTCAGTAGACAAAAGGGAAAAAAATAAGTCCAGACATTATCATGAGCATCTTCCACAATGTAATAATTTTATATGCTTGATCGAGAAATTAAGATCTCTTGCTCACTTATGCAGCGGCCCATTCTGTTGGTTTTTCTCATTGTGGCAAATTTTCCAACCGGATCTACAACTTCAGCCCTAAAAATCCAATAGACCCAACCCTTAACAAGCAATATGCAGCCCAATTACAAGGGATGTGTCCAAGGAATGTTGACCCAAGAATAGCCATTGACATGGATCCCAAAACTCCAAGGACATTTGACAATAATTACTACAAAAATTTACAACAAGGTATGGGCCTATTCACGTCAGATCAAGTGTTGTATACAGACAAAAGGTCCAAGGGAACTGTGGATCTTTGGGCCAGTAACTCAAAATCATTCCAAAATGCTTTTGTAACTGCAATGACAAAACTGGGCCGAGTTGGTGTGAAGACGGGGAGGAACGGAAATATTCGGTTTGATTGTGGAAGAATGAATTGAAGTGACATTTTACACAAATGGCCAATACTTATAGATTCTGTCCCAGTTAGCTTAATGGATTAAATTTGTCGAATAAATTAAAATTTTATTTTAAT</genome_strand>
        <mrna_strand>TCGCTTTAGCCACCAGAGATGTCATTCAGCTG........................................................................................................TCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCCCATTCTGTTGGTTTTTCTCATTGTGGCAAATTTTCCAACCGGATCTACAACTTCAGCCCTAAAAATCCAATAGACCCAACCCTTAACAAGCAATATGCAGCCCAATTACAAGGGATGTGTCCAAGGAATGTTGACCCAAGAATAGCCATTGACATGGATCCCAAAACTCCAAGGACATTTGACAATAATTACTACAAAAATTTACAACAAGGTATGGGCCTATTCACGTCAGATCAAGTGTTGTATACAGACAAAAGGTCCAAGGGAACTGTGGATCTTTGGGCCAGTAACTCAAAATCATTCCAAAATGCTTTTGTAACTGCAATGACAAAACTGGGCCGAGTTGGTGTGAAGACGGGGAGGAACGGAAATATTCGGTTTGATTGTGGAAGAATGAATTGAAGTGACATTTTACACAAATGGGCCATACTTATAGATTCTGTCCCAGNTAGCTTAATGGA-TAAATTTGTCGAAATAATTAAAA-TTTATTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E211403" ref_strand="+" ref_description="SGN-E211403 [cLEC-67-A8]">
      <seq>tcgctttagccaccagagatgtcattcagctgtctgggggaccatggtacccagtggaattaggaaggcttgatgggttcacatcaaaagcatcgaatgtggaagggaagctaccaaaaccaacattcaatctcaatcaactcaattctatgtttgcctctcatggtctaactcaggctgacatgatcgccctttctgcggcccattctgttggtttttctcattgtggcaaattttccaaccggatctacaacttcagccctaaaaatccaatagacccaacccttaacaagcaatatgcagcccaattacaagggatgtgtccaaggaatgttgacccaagaatagccattgacatggatcccaaaactccaaggacatttgacaataattactacaaaaatttacaacaaggtatgggcctattcacgtcagatcaagtgttgtatacagacaaaaggtccaagggaactgtggatctttgggccagtaactcaaaatcattccaaaatgcttttgtaactgcaatgacaaaactgggcccgagttggtgtgaagacggggaggaacggaaatattcggtttgattgtggaagaatgaattgaagtgacattttacacnaatggccaatacttatagattctgtcccagttagcttaatggattaaatttgtcgaataaattaaaattttattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54017" stop="51772"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53717" g_stop="53686" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53581" g_stop="53416" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="198" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53415" i_stop="52570" i_length="846">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52569" g_stop="52072" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="697" r_length="499" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E211403" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211403" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53717" e_stop="53686"/>
          <exon e_start="53581" e_stop="53416"/>
          <exon e_start="52569" e_stop="52072"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTGGTAATTCTGATGTTAATTACTTTCTTTATATAACTATTAATTAATTGTTAATTGTTATATTTAGTAGTTGATCTAGCTAGCTGTTTTGAAAATTCTGCTTTCAATATCTGAAGCAAGCAAGCAGATTTTAAAACAAATATAATATATAAAAAGGTTTATTTCGCTAAAGAAAATAAAATGCTCTATATAGATAGTAATATATTACTCAGTTTCTTTTTTAGTAAGTAGAAGAGAACTAGATTATAAATTTCAAAAGTTTATTTTTTTAAAAAAAAATTATGTACTAAGTCAAACTAACTTATACTCCTTCGATTCACAAATAGTTATACTAAAAAGGATGTTCAAGATTAATTGTCAATTTAAACGTTCAAGAAATAATTAGTTTTTTTTCTTAATTCTACCCTTAATAATTACTTCATTTTAATCAATTGAAAAACTATGTAGACTTTTGATATTCTTGCTATTATAAAATTATATTAGTCAAATTATACTTTGCATTAAATTTTTCTTGTCGAAAGTACATGATTTTACTCAGATAAATAATTGTGGACGGAGAAAATATGAAATAGGATTATGAGAGTATTAAATATTATTCAAACACTCGAATCATGGTCTTAAATTCCTTTTAATAAGTCTCTTATCATTTTTCATTTGACCTTTTGCTTTTTAGCACGTGTTATTGATTCAGACGTAACCATTACTCAATTATTTGGTTCATTATACTCCAGCCAGCTCAGTAGACAAAAGGGAAAAAAATAAGTCCAGACATTATCATGAGCATCTTCCACAATGTAATAATTTTATATGCTTGATCGAGAAATTAAGATCTCTTGCTCACTTATGCAGCGGCCCATTCTGTTGGTTTTTCTCATTGTGGCAAATTTTCCAACCGGATCTACAACTTCAGCCCTAAAAATCCAATAGACCCAACCCTTAACAAGCAATATGCAGCCCAATTACAAGGGATGTGTCCAAGGAATGTTGACCCAAGAATAGCCATTGACATGGATCCCAAAACTCCAAGGACATTTGACAATAATTACTACAAAAATTTACAACAAGGTATGGGCCTATTCACGTCAGATCAAGTGTTGTATACAGACAAAAGGTCCAAGGGAACTGTGGATCTTTGGGCCAGTAACTCAAAATCATTCCAAAATGCTTTTGTAACTGCAATGACAAAACTGGG-CCGAGTTGGTGTGAAGACGGGGAGGAACGGAAATATTCGGTTTGATTGTGGAAGAATGAATTGAAGTGACATTTTACACAAATGGCCAATACTTATAGATTCTGTCCCAGTTAGCTTAATGGATTAAATTTGTCGAATAAATTAAAATTTTATTT</genome_strand>
        <mrna_strand>TCGCTTTAGCCACCAGAGATGTCATTCAGCTG........................................................................................................TCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCCCATTCTGTTGGTTTTTCTCATTGTGGCAAATTTTCCAACCGGATCTACAACTTCAGCCCTAAAAATCCAATAGACCCAACCCTTAACAAGCAATATGCAGCCCAATTACAAGGGATGTGTCCAAGGAATGTTGACCCAAGAATAGCCATTGACATGGATCCCAAAACTCCAAGGACATTTGACAATAATTACTACAAAAATTTACAACAAGGTATGGGCCTATTCACGTCAGATCAAGTGTTGTATACAGACAAAAGGTCCAAGGGAACTGTGGATCTTTGGGCCAGTAACTCAAAATCATTCCAAAATGCTTTTGTAACTGCAATGACAAAACTGGGCCCGAGTTGGTGTGAAGACGGGGAGGAACGGAAATATTCGGTTTGATTGTGGAAGAATGAATTGAAGTGACATTTTACACNAATGGCCAATACTTATAGATTCTGTCCCAGTTAGCTTAATGGATTAAATTTGTCGAATAAATTAAAATTTTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E576052" ref_strand="+" ref_description="SGN-E576052 [59210]">
      <seq>atttagtcgacaaatttaattcattaagctaactgggacagaatctaaatagtggccatttgtgcaaaatgtcccttcagttcattcttccacaatcaaaccgaatatttccgttcctccccgtcttcacaccaactcggccagttgtcatgcagtgtaaaagcattggaatgattgagtactggccagaggtccacagttcccttggaccttttgtctgtatacagcacttgatctgatgtgaataggcccataccttgttgtaaatttttgtagtaattattgtcaaatgtccttggagtttagggatccatgtcaatggctatcccttggatcaacattccttggacacatcccttgtaattgggctgcatatagcttgttaagggttgggtctattggattagagggctgaaagttgtagatccggttggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="51785" stop="52801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52085" g_stop="52533" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E576052" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.027" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E576052" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52085" e_stop="52533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATTCGACAAATTTAATCCATTAAGCTAACTGGGACAGAATCTATAAGTATTGGCCATTTGTGTAAAATGTCACTTCAATTCATTCTTCCACAATCAAACCGAATATTTCCGTTCCTCCCCGTCTTCACACCAACTCGGCCCAGTTTTGTCATTGCAGTTACAAAAGCATTTTGGAATGATTTTGAGTTACTGGCCCAAAGATCCACAGTTCCCTTGGACCTTTTGTCTGTATACAACACTTGATCTGACGTGAATAGGCCCATACCTTGTTGTAAATTTTTGTAGTAATTATTGTCAAATGTCCTTGGAGTTTTGGGATCCATGTCAATGGCTAT-TCTTGGGTCAACATTCCTTGGACACATCCCTTGTAATTGGGCTGCATATTGCTTGTTAAGGGTTGGGTCTATTGGATTTTTAGGGCTG-AAGTTGTAGATCCGGTTGGAAA</genome_strand>
        <mrna_strand>ATTTAGTCGACAAATTTAATTCATTAAGCTAACTGGGACAGAATCTA-AA-TAGTGGCCATTTGTGCAAAATGTCCCTTCAGTTCATTCTTCCACAATCAAACCGAATATTTCCGTTCCTCCCCGTCTTCACACCAACTCGG-CCAG--TTGTCA-TGCAG-TGTAAAAGCA--TTGGAATGA--TTGAG-TACTGG-CCAGAGGTCCACAGTTCCCTTGGACCTTTTGTCTGTATACAGCACTTGATCTGATGTGAATAGGCCCATACCTTGTTGTAAATTTTTGTAGTAATTATTGTCAAATGTCCTTGGAGTTTAGGGATCCATGTCAATGGCTATCCCTTGGATCAACATTCCTTGGACACATCCCTTGTAATTGGGCTGCATATAGCTTGTTAAGGGTTGGGTCTATTGGA-TTAGAGGGCTGAAAGTTGTAGATCCGGTTGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E407709" ref_strand="+" ref_description="SGN-E407709 [PPI-8-E2]">
      <seq>attaaagccaaagccgctgttgattcaaattcgcgttgtaaaaataaagtctcttgtgctgacattcttgctttagctaccagagacgtcattcagctgtctgggggaccatggtacccagtggaattaggaaggcttgatgggttcacatcaaaagcatcgaatgtggaaggaaagctgccaaaaccaacattcaatctcaatcaactcaattctatgtttgcctctcatggtctaactcaggcggacatgatcgccctttctgcggcccattctgttggattttctcattgtggcaagttttccaaccggatctacaacttcagccctcaaaatttaatagacccaaccctgaacaagcaatatgcagctcaattacaagggatgtgtccaaggaatgttgacccaaggatagccattgacatggatcccaaaactccaaggacatttgacaataattactacaaaaatttacaacaaggtatgggcctattcacatcagatcaagtgctgtatacagacaaaaggtccaagggaactgtggacctttgggccagtaactcaaaatcattccaaaatgcttttacaactgcaatgacaaaattgggccgagtttggtgtgaagacaaggaggaacngaaatattcggtttgattgtggaagaatgaactgaggggacattttccacaaatggccactatttagcttaatggattaaatttgtcgacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54084" stop="51788"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53784" g_stop="53686" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53581" g_stop="53416" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="265" r_length="166" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53415" i_stop="52570" i_length="846">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.927" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52569" g_stop="52139" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="697" r_length="432" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E407709" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E407709" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53784" e_stop="53686"/>
          <exon e_start="53581" e_stop="53416"/>
          <exon e_start="52569" e_stop="52139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTGGTAATTCTGATGTTAATTACTTTCTTTATATAACTATTAATTAATTGTTAATTGTTATATTTAGTAGTTGATCTAGCTAGCTGTTTTGAAAATTCTGCTTTCAATATCTGAAGCAAGCAAGCAGATTTTAAAACAAATATAATATATAAAAAGGTTTATTTCGCTAAAGAAAATAAAATGCTCTATATAGATAGTAATATATTACTCAGTTTCTTTTTTAGTAAGTAGAAGAGAACTAGATTATAAATTTCAAAAGTTTATTTTTTTAAAAAAAAATTATGTACTAAGTCAAACTAACTTATACTCCTTCGATTCACAAATAGTTATACTAAAAAGGATGTTCAAGATTAATTGTCAATTTAAACGTTCAAGAAATAATTAGTTTTTTTTCTTAATTCTACCCTTAATAATTACTTCATTTTAATCAATTGAAAAACTATGTAGACTTTTGATATTCTTGCTATTATAAAATTATATTAGTCAAATTATACTTTGCATTAAATTTTTCTTGTCGAAAGTACATGATTTTACTCAGATAAATAATTGTGGACGGAGAAAATATGAAATAGGATTATGAGAGTATTAAATATTATTCAAACACTCGAATCATGGTCTTAAATTCCTTTTAATAAGTCTCTTATCATTTTTCATTTGACCTTTTGCTTTTTAGCACGTGTTATTGATTCAGACGTAACCATTACTCAATTATTTGGTTCATTATACTCCAGCCAGCTCAGTAGACAAAAGGGAAAAAAATAAGTCCAGACATTATCATGAGCATCTTCCACAATGTAATAATTTTATATGCTTGATCGAGAAATTAAGATCTCTTGCTCACTTATGCAGCGGCCCATTCTGTTGGTTTTTCTCATTGTGGCAAATTTTCCAACCGGATCTACAACTTCAGCCCTAAAAATCCAATAGACCCAACCCTTAACAAGCAATATGCAGCCCAATTACAAGGGATGTGTCCAAGGAATGTTGACCCAAGAATAGCCATTGACATGGATCCCAAAACTCCAAGGACATTTGACAATAATTACTACAAAAATTTACAACAAGGTATGGGCCTATTCACGTCAGATCAAGTGTTGTATACAGACAAAAGGTCCAAGGGAACTGTGGATCTTTGGGCCAGTAACTCAAAATCATTCCAAAATGCTTTTGTAACTGCAATGACAAAACTGGGCCGAG-TTGGTGTGAAGACGGGGAGGAACGGAAATATTCGGTTTGATTGTGGAAGAATGAATTGAAGTGACATTTTACACAAATGGCCA</genome_strand>
        <mrna_strand>ATTAAAGCCAAAGCCGCTGTTGATTCAAATTCGCGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTTGCTTTAGCTACCAGAGACGTCATTCAGCTG........................................................................................................TCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGAAAGCTGCCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCGGACATGATCGCCCTTTCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCCCATTCTGTTGGATTTTCTCATTGTGGCAAGTTTTCCAACCGGATCTACAACTTCAGCCCTCAAAATTTAATAGACCCAACCCTGAACAAGCAATATGCAGCTCAATTACAAGGGATGTGTCCAAGGAATGTTGACCCAAGGATAGCCATTGACATGGATCCCAAAACTCCAAGGACATTTGACAATAATTACTACAAAAATTTACAACAAGGTATGGGCCTATTCACATCAGATCAAGTGCTGTATACAGACAAAAGGTCCAAGGGAACTGTGGACCTTTGGGCCAGTAACTCAAAATCATTCCAAAATGCTTTTACAACTGCAATGACAAAATTGGGCCGAGTTTGGTGTGAAGACAAGGAGGAACNGAAATATTCGGTTTGATTGTGGAAGAATGAACTGAGGGGACATTTTCCACAAATGGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E205847" ref_strand="+" ref_description="SGN-E205847 [cLEC-20-O16]">
      <seq>caacattcaatctcaatcaactcaattctatgtttgcctctcatggtctaactcaggctgacatgatcgccctttctgcggcccattctgttggtttttctcattgtggcaaattttccaaccggatctacaacttcagccctaaaaatccaatagacccaacccttaacaagcaatatgcagcccaattacaagggatgtgtccaaggaatgttgacccaagaatagccattgacatggatcccaaaactccaaggacatttgacaataattactacaaaaatttacaacaaggtatgggcctattcacgtcagatcaagtgttgtatacagacaaaaggtccaagggaactgtggatctttgggccagtaactcaaaatcattccaaaatgcttttgtaactgcaatgacaaaactgggccgagttggtgtgaagacggggaggaacggaaatattcggtttgattgtggaagaatgaattgaagtgacattttacacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="53793" stop="51845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53493" g_stop="53416" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53415" i_stop="52570" i_length="846">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52569" g_stop="52145" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="503" r_length="425" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E205847" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205847" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53493" e_stop="53416"/>
          <exon e_start="52569" e_stop="52145"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTGGTAATTCTGATGTTAATTACTTTCTTTATATAACTATTAATTAATTGTTAATTGTTATATTTAGTAGTTGATCTAGCTAGCTGTTTTGAAAATTCTGCTTTCAATATCTGAAGCAAGCAAGCAGATTTTAAAACAAATATAATATATAAAAAGGTTTATTTCGCTAAAGAAAATAAAATGCTCTATATAGATAGTAATATATTACTCAGTTTCTTTTTTAGTAAGTAGAAGAGAACTAGATTATAAATTTCAAAAGTTTATTTTTTTAAAAAAAAATTATGTACTAAGTCAAACTAACTTATACTCCTTCGATTCACAAATAGTTATACTAAAAAGGATGTTCAAGATTAATTGTCAATTTAAACGTTCAAGAAATAATTAGTTTTTTTTCTTAATTCTACCCTTAATAATTACTTCATTTTAATCAATTGAAAAACTATGTAGACTTTTGATATTCTTGCTATTATAAAATTATATTAGTCAAATTATACTTTGCATTAAATTTTTCTTGTCGAAAGTACATGATTTTACTCAGATAAATAATTGTGGACGGAGAAAATATGAAATAGGATTATGAGAGTATTAAATATTATTCAAACACTCGAATCATGGTCTTAAATTCCTTTTAATAAGTCTCTTATCATTTTTCATTTGACCTTTTGCTTTTTAGCACGTGTTATTGATTCAGACGTAACCATTACTCAATTATTTGGTTCATTATACTCCAGCCAGCTCAGTAGACAAAAGGGAAAAAAATAAGTCCAGACATTATCATGAGCATCTTCCACAATGTAATAATTTTATATGCTTGATCGAGAAATTAAGATCTCTTGCTCACTTATGCAGCGGCCCATTCTGTTGGTTTTTCTCATTGTGGCAAATTTTCCAACCGGATCTACAACTTCAGCCCTAAAAATCCAATAGACCCAACCCTTAACAAGCAATATGCAGCCCAATTACAAGGGATGTGTCCAAGGAATGTTGACCCAAGAATAGCCATTGACATGGATCCCAAAACTCCAAGGACATTTGACAATAATTACTACAAAAATTTACAACAAGGTATGGGCCTATTCACGTCAGATCAAGTGTTGTATACAGACAAAAGGTCCAAGGGAACTGTGGATCTTTGGGCCAGTAACTCAAAATCATTCCAAAATGCTTTTGTAACTGCAATGACAAAACTGGGCCGAGTTGGTGTGAAGACGGGGAGGAACGGAAATATTCGGTTTGATTGTGGAAGAATGAATTGAAGTGACATTTTACACAAA</genome_strand>
        <mrna_strand>CAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCCCATTCTGTTGGTTTTTCTCATTGTGGCAAATTTTCCAACCGGATCTACAACTTCAGCCCTAAAAATCCAATAGACCCAACCCTTAACAAGCAATATGCAGCCCAATTACAAGGGATGTGTCCAAGGAATGTTGACCCAAGAATAGCCATTGACATGGATCCCAAAACTCCAAGGACATTTGACAATAATTACTACAAAAATTTACAACAAGGTATGGGCCTATTCACGTCAGATCAAGTGTTGTATACAGACAAAAGGTCCAAGGGAACTGTGGATCTTTGGGCCAGTAACTCAAAATCATTCCAAAATGCTTTTGTAACTGCAATGACAAAACTGGGCCGAGTTGGTGTGAAGACGGGGAGGAACGGAAATATTCGGTTTGATTGTGGAAGAATGAATTGAAGTGACATTTTACACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E236659" ref_strand="+" ref_description="SGN-E236659 [cLED-13-N8]">
      <seq>aagcatcgaatgtggaagggaagctaccaaaaccaacattcaatctcaatcaactcaattctatgtttgcctctcatggtctaactcaggctgacatgatcgccctttctgcggcccattctgttggtttttctcattgtggcaaattttccaaccggatctacaacttcagccctaaaaatccaatagacccaacccttaacaagcaatatgcagcccaattacaagggatgtgtccaaggaatgttgacccaagaatagccattgacatggatcccaaaactccaaggacatttgacaataattactacaaaaatttacaacaaggtatgggcctattcacgtcagatcaagtgttgtatacagacaaaaggtccaagggaactgtggatctttgggccagtaactcaaaatcattccaaaatgcttttgtaactgcaatgacaaaactgggccgagttggtgtgaagacggggaggaacggaaatattcggtttgattgtggaagaatgaattgaagtgacattttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="53826" stop="51850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53526" g_stop="53416" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53415" i_stop="52570" i_length="846">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52569" g_stop="52150" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="531" r_length="420" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E236659" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236659" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53526" e_stop="53416"/>
          <exon e_start="52569" e_stop="52150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTGGTAATTCTGATGTTAATTACTTTCTTTATATAACTATTAATTAATTGTTAATTGTTATATTTAGTAGTTGATCTAGCTAGCTGTTTTGAAAATTCTGCTTTCAATATCTGAAGCAAGCAAGCAGATTTTAAAACAAATATAATATATAAAAAGGTTTATTTCGCTAAAGAAAATAAAATGCTCTATATAGATAGTAATATATTACTCAGTTTCTTTTTTAGTAAGTAGAAGAGAACTAGATTATAAATTTCAAAAGTTTATTTTTTTAAAAAAAAATTATGTACTAAGTCAAACTAACTTATACTCCTTCGATTCACAAATAGTTATACTAAAAAGGATGTTCAAGATTAATTGTCAATTTAAACGTTCAAGAAATAATTAGTTTTTTTTCTTAATTCTACCCTTAATAATTACTTCATTTTAATCAATTGAAAAACTATGTAGACTTTTGATATTCTTGCTATTATAAAATTATATTAGTCAAATTATACTTTGCATTAAATTTTTCTTGTCGAAAGTACATGATTTTACTCAGATAAATAATTGTGGACGGAGAAAATATGAAATAGGATTATGAGAGTATTAAATATTATTCAAACACTCGAATCATGGTCTTAAATTCCTTTTAATAAGTCTCTTATCATTTTTCATTTGACCTTTTGCTTTTTAGCACGTGTTATTGATTCAGACGTAACCATTACTCAATTATTTGGTTCATTATACTCCAGCCAGCTCAGTAGACAAAAGGGAAAAAAATAAGTCCAGACATTATCATGAGCATCTTCCACAATGTAATAATTTTATATGCTTGATCGAGAAATTAAGATCTCTTGCTCACTTATGCAGCGGCCCATTCTGTTGGTTTTTCTCATTGTGGCAAATTTTCCAACCGGATCTACAACTTCAGCCCTAAAAATCCAATAGACCCAACCCTTAACAAGCAATATGCAGCCCAATTACAAGGGATGTGTCCAAGGAATGTTGACCCAAGAATAGCCATTGACATGGATCCCAAAACTCCAAGGACATTTGACAATAATTACTACAAAAATTTACAACAAGGTATGGGCCTATTCACGTCAGATCAAGTGTTGTATACAGACAAAAGGTCCAAGGGAACTGTGGATCTTTGGGCCAGTAACTCAAAATCATTCCAAAATGCTTTTGTAACTGCAATGACAAAACTGGGCCGAGTTGGTGTGAAGACGGGGAGGAACGGAAATATTCGGTTTGATTGTGGAAGAATGAATTGAAGTGACATTTTAC</genome_strand>
        <mrna_strand>AAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCCCATTCTGTTGGTTTTTCTCATTGTGGCAAATTTTCCAACCGGATCTACAACTTCAGCCCTAAAAATCCAATAGACCCAACCCTTAACAAGCAATATGCAGCCCAATTACAAGGGATGTGTCCAAGGAATGTTGACCCAAGAATAGCCATTGACATGGATCCCAAAACTCCAAGGACATTTGACAATAATTACTACAAAAATTTACAACAAGGTATGGGCCTATTCACGTCAGATCAAGTGTTGTATACAGACAAAAGGTCCAAGGGAACTGTGGATCTTTGGGCCAGTAACTCAAAATCATTCCAAAATGCTTTTGTAACTGCAATGACAAAACTGGGCCGAGTTGGTGTGAAGACGGGGAGGAACGGAAATATTCGGTTTGATTGTGGAAGAATGAATTGAAGTGACATTTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E214399" ref_strand="+" ref_description="SGN-E214399 [cLEC-77-I8]">
      <seq>tcgctttagccaccagagatgtcattcagctgtctgggggaccatggtacccagtggaattaggaaggcttgatgggttcacatcaaaagcatcgaatgtggaagggaagctaccaaaaccaacattcaatctcaatcaactcaattctatgtttgcctctcatggtctaactcaggctgacatgatcgccctttctgcggcccattctgttggtttttctcattgtggcaaattttccaaccggatctacaacttcagccctaaaaatccaatagacccaacccttaacaagcaatatgcagcccaattacaagggatgtgtccaaggaatgttgacccaagaatagccattgacatggatcccaaaactccaaggacatttgacaataattactacaaaaatttacaacaaggtatgggcctattcacgtcagatcaagtgttgtatacagacaaaaggtccaagggaactgtggatctttgggccagtaactcaaaatcattccaaaatgcttttgtaactgcaatgacaaaactgggccgagttggtgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54017" stop="51913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53717" g_stop="53686" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53581" g_stop="53416" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="198" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53415" i_stop="52570" i_length="846">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52569" g_stop="52213" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="555" r_length="357" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E214399" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214399" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53717" e_stop="53686"/>
          <exon e_start="53581" e_stop="53416"/>
          <exon e_start="52569" e_stop="52213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTGGTAATTCTGATGTTAATTACTTTCTTTATATAACTATTAATTAATTGTTAATTGTTATATTTAGTAGTTGATCTAGCTAGCTGTTTTGAAAATTCTGCTTTCAATATCTGAAGCAAGCAAGCAGATTTTAAAACAAATATAATATATAAAAAGGTTTATTTCGCTAAAGAAAATAAAATGCTCTATATAGATAGTAATATATTACTCAGTTTCTTTTTTAGTAAGTAGAAGAGAACTAGATTATAAATTTCAAAAGTTTATTTTTTTAAAAAAAAATTATGTACTAAGTCAAACTAACTTATACTCCTTCGATTCACAAATAGTTATACTAAAAAGGATGTTCAAGATTAATTGTCAATTTAAACGTTCAAGAAATAATTAGTTTTTTTTCTTAATTCTACCCTTAATAATTACTTCATTTTAATCAATTGAAAAACTATGTAGACTTTTGATATTCTTGCTATTATAAAATTATATTAGTCAAATTATACTTTGCATTAAATTTTTCTTGTCGAAAGTACATGATTTTACTCAGATAAATAATTGTGGACGGAGAAAATATGAAATAGGATTATGAGAGTATTAAATATTATTCAAACACTCGAATCATGGTCTTAAATTCCTTTTAATAAGTCTCTTATCATTTTTCATTTGACCTTTTGCTTTTTAGCACGTGTTATTGATTCAGACGTAACCATTACTCAATTATTTGGTTCATTATACTCCAGCCAGCTCAGTAGACAAAAGGGAAAAAAATAAGTCCAGACATTATCATGAGCATCTTCCACAATGTAATAATTTTATATGCTTGATCGAGAAATTAAGATCTCTTGCTCACTTATGCAGCGGCCCATTCTGTTGGTTTTTCTCATTGTGGCAAATTTTCCAACCGGATCTACAACTTCAGCCCTAAAAATCCAATAGACCCAACCCTTAACAAGCAATATGCAGCCCAATTACAAGGGATGTGTCCAAGGAATGTTGACCCAAGAATAGCCATTGACATGGATCCCAAAACTCCAAGGACATTTGACAATAATTACTACAAAAATTTACAACAAGGTATGGGCCTATTCACGTCAGATCAAGTGTTGTATACAGACAAAAGGTCCAAGGGAACTGTGGATCTTTGGGCCAGTAACTCAAAATCATTCCAAAATGCTTTTGTAACTGCAATGACAAAACTGGGCCGAGTTGGTGTGA</genome_strand>
        <mrna_strand>TCGCTTTAGCCACCAGAGATGTCATTCAGCTG........................................................................................................TCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCCCATTCTGTTGGTTTTTCTCATTGTGGCAAATTTTCCAACCGGATCTACAACTTCAGCCCTAAAAATCCAATAGACCCAACCCTTAACAAGCAATATGCAGCCCAATTACAAGGGATGTGTCCAAGGAATGTTGACCCAAGAATAGCCATTGACATGGATCCCAAAACTCCAAGGACATTTGACAATAATTACTACAAAAATTTACAACAAGGTATGGGCCTATTCACGTCAGATCAAGTGTTGTATACAGACAAAAGGTCCAAGGGAACTGTGGATCTTTGGGCCAGTAACTCAAAATCATTCCAAAATGCTTTTGTAACTGCAATGACAAAACTGGGCCGAGTTGGTGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E201856" ref_strand="+" ref_description="SGN-E201856 [cLEC-18-G15]">
      <seq>tttgatactgtaattaaagccaaagccgctgttgattcagactcacgttgtaaaaataaagtctcttgtgctgacattctcgctttagccaccagagatgtcattcagctgtctgggggaccatggtacccagtggaattaggaaggcttgatgggttcacatcaaaagcatcgaatgtggaagggaagctaccaaaaccaacattcaatctcaatcaactcaattctatgtttgcctctcatggtctaactcaggctgacatgatcgccctttctgcggcccattctgttggtttttctcattgtggcaaattttccaaccggatctacaacttcagccctaaaaatccaatagacccaacccttaacaagcaatatgcagcccaattacaagggatgtgtccaaggaatgttgacccaagaatagccattgacatggatcccaaaactccaaggacatttgacaataattactacaaaaatttacaacaaggtatgggcctattcacgtcagatcaagtgttgtatacagacaaaaggtccaagggaactgtggatctttgggccagtaactcaaaatcattccaaaatgcttttgtaactgcaatgacaaaactgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54096" stop="51926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53796" g_stop="53686" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53581" g_stop="53416" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="277" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53415" i_stop="52570" i_length="846">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52569" g_stop="52226" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="621" r_length="344" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E201856" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201856" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53796" e_stop="53686"/>
          <exon e_start="53581" e_stop="53416"/>
          <exon e_start="52569" e_stop="52226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTGGTAATTCTGATGTTAATTACTTTCTTTATATAACTATTAATTAATTGTTAATTGTTATATTTAGTAGTTGATCTAGCTAGCTGTTTTGAAAATTCTGCTTTCAATATCTGAAGCAAGCAAGCAGATTTTAAAACAAATATAATATATAAAAAGGTTTATTTCGCTAAAGAAAATAAAATGCTCTATATAGATAGTAATATATTACTCAGTTTCTTTTTTAGTAAGTAGAAGAGAACTAGATTATAAATTTCAAAAGTTTATTTTTTTAAAAAAAAATTATGTACTAAGTCAAACTAACTTATACTCCTTCGATTCACAAATAGTTATACTAAAAAGGATGTTCAAGATTAATTGTCAATTTAAACGTTCAAGAAATAATTAGTTTTTTTTCTTAATTCTACCCTTAATAATTACTTCATTTTAATCAATTGAAAAACTATGTAGACTTTTGATATTCTTGCTATTATAAAATTATATTAGTCAAATTATACTTTGCATTAAATTTTTCTTGTCGAAAGTACATGATTTTACTCAGATAAATAATTGTGGACGGAGAAAATATGAAATAGGATTATGAGAGTATTAAATATTATTCAAACACTCGAATCATGGTCTTAAATTCCTTTTAATAAGTCTCTTATCATTTTTCATTTGACCTTTTGCTTTTTAGCACGTGTTATTGATTCAGACGTAACCATTACTCAATTATTTGGTTCATTATACTCCAGCCAGCTCAGTAGACAAAAGGGAAAAAAATAAGTCCAGACATTATCATGAGCATCTTCCACAATGTAATAATTTTATATGCTTGATCGAGAAATTAAGATCTCTTGCTCACTTATGCAGCGGCCCATTCTGTTGGTTTTTCTCATTGTGGCAAATTTTCCAACCGGATCTACAACTTCAGCCCTAAAAATCCAATAGACCCAACCCTTAACAAGCAATATGCAGCCCAATTACAAGGGATGTGTCCAAGGAATGTTGACCCAAGAATAGCCATTGACATGGATCCCAAAACTCCAAGGACATTTGACAATAATTACTACAAAAATTTACAACAAGGTATGGGCCTATTCACGTCAGATCAAGTGTTGTATACAGACAAAAGGTCCAAGGGAACTGTGGATCTTTGGGCCAGTAACTCAAAATCATTCCAAAATGCTTTTGTAACTGCAATGACAAAACTGGGC</genome_strand>
        <mrna_strand>TTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAGACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTG........................................................................................................TCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCCCATTCTGTTGGTTTTTCTCATTGTGGCAAATTTTCCAACCGGATCTACAACTTCAGCCCTAAAAATCCAATAGACCCAACCCTTAACAAGCAATATGCAGCCCAATTACAAGGGATGTGTCCAAGGAATGTTGACCCAAGAATAGCCATTGACATGGATCCCAAAACTCCAAGGACATTTGACAATAATTACTACAAAAATTTACAACAAGGTATGGGCCTATTCACGTCAGATCAAGTGTTGTATACAGACAAAAGGTCCAAGGGAACTGTGGATCTTTGGGCCAGTAACTCAAAATCATTCCAAAATGCTTTTGTAACTGCAATGACAAAACTGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E266273" ref_strand="+" ref_description="SGN-E266273 [cLEI-3-J7]">
      <seq>tcgctttatccaccagagatgtcattcagctgtctgggggaccatggtacccagtggaattaggaaggcttgatgggttcacatcaaaagcatcgaatgtggaagggaagctaccaaaaccaacattcaatctcaatcaactcaattctatgtttgcctctcatggtctaactcaggctgacatgatcgccctttctgcggcccattctgttggtttttctcattgtggcaaattttccaaccggatctacaacttcagccctaaaaatccaatagacccaacccttaacaagcaatatgcagcccaattacaagggatgtgtccaaggaatgttgacccaagaatagccattgacatggatcccaaaactccaaggacatttgacaataattactacaaaaatttacaacaaggtatgggcctattcacgtcagatcaagtgttgtatacagacaaaaggtccaagggaactgtggatctttgggccagtaactcaaaatcattccaaaatgcttttgtaactgcaatgacaaaactgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54017" stop="51926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53717" g_stop="53686" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53581" g_stop="53416" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="198" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53415" i_stop="52570" i_length="846">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52569" g_stop="52226" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="542" r_length="344" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E266273" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266273" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53717" e_stop="53686"/>
          <exon e_start="53581" e_stop="53416"/>
          <exon e_start="52569" e_stop="52226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTGGTAATTCTGATGTTAATTACTTTCTTTATATAACTATTAATTAATTGTTAATTGTTATATTTAGTAGTTGATCTAGCTAGCTGTTTTGAAAATTCTGCTTTCAATATCTGAAGCAAGCAAGCAGATTTTAAAACAAATATAATATATAAAAAGGTTTATTTCGCTAAAGAAAATAAAATGCTCTATATAGATAGTAATATATTACTCAGTTTCTTTTTTAGTAAGTAGAAGAGAACTAGATTATAAATTTCAAAAGTTTATTTTTTTAAAAAAAAATTATGTACTAAGTCAAACTAACTTATACTCCTTCGATTCACAAATAGTTATACTAAAAAGGATGTTCAAGATTAATTGTCAATTTAAACGTTCAAGAAATAATTAGTTTTTTTTCTTAATTCTACCCTTAATAATTACTTCATTTTAATCAATTGAAAAACTATGTAGACTTTTGATATTCTTGCTATTATAAAATTATATTAGTCAAATTATACTTTGCATTAAATTTTTCTTGTCGAAAGTACATGATTTTACTCAGATAAATAATTGTGGACGGAGAAAATATGAAATAGGATTATGAGAGTATTAAATATTATTCAAACACTCGAATCATGGTCTTAAATTCCTTTTAATAAGTCTCTTATCATTTTTCATTTGACCTTTTGCTTTTTAGCACGTGTTATTGATTCAGACGTAACCATTACTCAATTATTTGGTTCATTATACTCCAGCCAGCTCAGTAGACAAAAGGGAAAAAAATAAGTCCAGACATTATCATGAGCATCTTCCACAATGTAATAATTTTATATGCTTGATCGAGAAATTAAGATCTCTTGCTCACTTATGCAGCGGCCCATTCTGTTGGTTTTTCTCATTGTGGCAAATTTTCCAACCGGATCTACAACTTCAGCCCTAAAAATCCAATAGACCCAACCCTTAACAAGCAATATGCAGCCCAATTACAAGGGATGTGTCCAAGGAATGTTGACCCAAGAATAGCCATTGACATGGATCCCAAAACTCCAAGGACATTTGACAATAATTACTACAAAAATTTACAACAAGGTATGGGCCTATTCACGTCAGATCAAGTGTTGTATACAGACAAAAGGTCCAAGGGAACTGTGGATCTTTGGGCCAGTAACTCAAAATCATTCCAAAATGCTTTTGTAACTGCAATGACAAAACTGGGC</genome_strand>
        <mrna_strand>TCGCTTTATCCACCAGAGATGTCATTCAGCTG........................................................................................................TCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCCCATTCTGTTGGTTTTTCTCATTGTGGCAAATTTTCCAACCGGATCTACAACTTCAGCCCTAAAAATCCAATAGACCCAACCCTTAACAAGCAATATGCAGCCCAATTACAAGGGATGTGTCCAAGGAATGTTGACCCAAGAATAGCCATTGACATGGATCCCAAAACTCCAAGGACATTTGACAATAATTACTACAAAAATTTACAACAAGGTATGGGCCTATTCACGTCAGATCAAGTGTTGTATACAGACAAAAGGTCCAAGGGAACTGTGGATCTTTGGGCCAGTAACTCAAAATCATTCCAAAATGCTTTTGTAACTGCAATGACAAAACTGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E212653" ref_strand="+" ref_description="SGN-E212653 [cLEC-73-I21]">
      <seq>tgttctccgtctcttcttccatgattgctttgttgagggatgtgatgcttcagtgattgtatcatcaacaccagggaacacagctgagaaggatcattcagataatctatcattggcaggagatggatttgatactgtaattaaagccaaagccgctgttgattcaaactcacgttgtaaaaataaagtctcttgtgctgacattctcgctttagccaccagagatgtcattcagctgtctgggggaccatggtacccagtggaattaggaaggcttgatgggttcacatcaaaagcatcgaatgtggaagggaagctaccaaaaccaacattcaatctcaatcaactcaattctatgtttgcctctcatggtctaactcaggctgacatgatcgccctttctgcggcccattctgttggtttttctcattgtggcaaattttccaaccggatctacaacttcagccctaaaaatccaatagacccaacccttaacaagcaatatgcagcccaattacaagggatgtgtccaaggaatgttgacccaagaatagccattgacatggatcccaaaactccaaggacatttgacaataattactacaaaaatttacaacaaggtatgggcctattcacgtcagatcaagtgttgtatacagacaaaaggtccaagggaactgtggatctttgggccagtaactcaaaatcattccaaaatgcttttgtaactgcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54392" stop="51938"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54092" g_stop="54056" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53686" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="238" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53581" g_stop="53416" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="404" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53415" i_stop="52570" i_length="846">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52569" g_stop="52238" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="736" r_length="332" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E212653" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212653" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54092" e_stop="54056"/>
          <exon e_start="53886" e_stop="53686"/>
          <exon e_start="53581" e_stop="53416"/>
          <exon e_start="52569" e_stop="52238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTGGTAATTCTGATGTTAATTACTTTCTTTATATAACTATTAATTAATTGTTAATTGTTATATTTAGTAGTTGATCTAGCTAGCTGTTTTGAAAATTCTGCTTTCAATATCTGAAGCAAGCAAGCAGATTTTAAAACAAATATAATATATAAAAAGGTTTATTTCGCTAAAGAAAATAAAATGCTCTATATAGATAGTAATATATTACTCAGTTTCTTTTTTAGTAAGTAGAAGAGAACTAGATTATAAATTTCAAAAGTTTATTTTTTTAAAAAAAAATTATGTACTAAGTCAAACTAACTTATACTCCTTCGATTCACAAATAGTTATACTAAAAAGGATGTTCAAGATTAATTGTCAATTTAAACGTTCAAGAAATAATTAGTTTTTTTTCTTAATTCTACCCTTAATAATTACTTCATTTTAATCAATTGAAAAACTATGTAGACTTTTGATATTCTTGCTATTATAAAATTATATTAGTCAAATTATACTTTGCATTAAATTTTTCTTGTCGAAAGTACATGATTTTACTCAGATAAATAATTGTGGACGGAGAAAATATGAAATAGGATTATGAGAGTATTAAATATTATTCAAACACTCGAATCATGGTCTTAAATTCCTTTTAATAAGTCTCTTATCATTTTTCATTTGACCTTTTGCTTTTTAGCACGTGTTATTGATTCAGACGTAACCATTACTCAATTATTTGGTTCATTATACTCCAGCCAGCTCAGTAGACAAAAGGGAAAAAAATAAGTCCAGACATTATCATGAGCATCTTCCACAATGTAATAATTTTATATGCTTGATCGAGAAATTAAGATCTCTTGCTCACTTATGCAGCGGCCCATTCTGTTGGTTTTTCTCATTGTGGCAAATTTTCCAACCGGATCTACAACTTCAGCCCTAAAAATCCAATAGACCCAACCCTTAACAAGCAATATGCAGCCCAATTACAAGGGATGTGTCCAAGGAATGTTGACCCAAGAATAGCCATTGACATGGATCCCAAAACTCCAAGGACATTTGACAATAATTACTACAAAAATTTACAACAAGGTATGGGCCTATTCACGTCAGATCAAGTGTTGTATACAGACAAAAGGTCCAAGGGAACTGTGGATCTTTGGGCCAGTAACTCAAAATCATTCCAAAATGCTTTTGTAACTGCAATG</genome_strand>
        <mrna_strand>TGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAG.........................................................................................................................................................................GGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTG........................................................................................................TCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCCCATTCTGTTGGTTTTTCTCATTGTGGCAAATTTTCCAACCGGATCTACAACTTCAGCCCTAAAAATCCAATAGACCCAACCCTTAACAAGCAATATGCAGCCCAATTACAAGGGATGTGTCCAAGGAATGTTGACCCAAGAATAGCCATTGACATGGATCCCAAAACTCCAAGGACATTTGACAATAATTACTACAAAAATTTACAACAAGGTATGGGCCTATTCACGTCAGATCAAGTGTTGTATACAGACAAAAGGTCCAAGGGAACTGTGGATCTTTGGGCCAGTAACTCAAAATCATTCCAAAATGCTTTTGTAACTGCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E210619" ref_strand="+" ref_description="SGN-E210619 [cLEC-68-A12]">
      <seq>tgaatccattgttagaaatgttgttaaccagaaattcaaacaaacttttgtcactgtccctgctgttctccgtctcttcttccatgattgctttgttgagggatgtgatgcttcagtgattgtatcatcaacaccagggaacacagctgagaaggatcattcagataatctatcattggcaggagatggatttgatactgtaattaaagccaaagccgctgttgattcaaactcacgttgtaaaaataaagtctcttgtgctgacattctcgctttagccaccagagatgtcattcagctgtctgggggaccatggtacccagtggaattaggaaggcttgatgggttcacatcaaaagcatcgaatgtggaagggaagctaccaaaaccaacattcaatctcaatcaactcaattctatgtttgcctctcatggtctaactcaggctgacatgatcgccctttctgcggcccattctgttggtttttctcattgtggcaaattttccaaccggatctacaacttcagccctaaaaatccaatagacccaacccttaacaagcaatatgcagcccaattacaagggatgtgtccaaggaatgttgacccaagaatagccattgacatggatcccaaaactccaaggacatttgacaataattactacaaaaatttacaacaaggtatgggcctattcacgtcagatcaagtgttgtatacagacaaaaggtccaaggggaactgtggatctttgggccagtaaactcaaatcattccaaaatgcttttgtaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54455" stop="51943"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54155" g_stop="54056" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53686" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="301" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53581" g_stop="53416" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="467" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53415" i_stop="52570" i_length="846">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52569" g_stop="52243" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="795" r_length="328" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E210619" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>794</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54155" e_stop="54056"/>
          <exon e_start="53886" e_stop="53686"/>
          <exon e_start="53581" e_stop="53416"/>
          <exon e_start="52569" e_stop="52243"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTGGTAATTCTGATGTTAATTACTTTCTTTATATAACTATTAATTAATTGTTAATTGTTATATTTAGTAGTTGATCTAGCTAGCTGTTTTGAAAATTCTGCTTTCAATATCTGAAGCAAGCAAGCAGATTTTAAAACAAATATAATATATAAAAAGGTTTATTTCGCTAAAGAAAATAAAATGCTCTATATAGATAGTAATATATTACTCAGTTTCTTTTTTAGTAAGTAGAAGAGAACTAGATTATAAATTTCAAAAGTTTATTTTTTTAAAAAAAAATTATGTACTAAGTCAAACTAACTTATACTCCTTCGATTCACAAATAGTTATACTAAAAAGGATGTTCAAGATTAATTGTCAATTTAAACGTTCAAGAAATAATTAGTTTTTTTTCTTAATTCTACCCTTAATAATTACTTCATTTTAATCAATTGAAAAACTATGTAGACTTTTGATATTCTTGCTATTATAAAATTATATTAGTCAAATTATACTTTGCATTAAATTTTTCTTGTCGAAAGTACATGATTTTACTCAGATAAATAATTGTGGACGGAGAAAATATGAAATAGGATTATGAGAGTATTAAATATTATTCAAACACTCGAATCATGGTCTTAAATTCCTTTTAATAAGTCTCTTATCATTTTTCATTTGACCTTTTGCTTTTTAGCACGTGTTATTGATTCAGACGTAACCATTACTCAATTATTTGGTTCATTATACTCCAGCCAGCTCAGTAGACAAAAGGGAAAAAAATAAGTCCAGACATTATCATGAGCATCTTCCACAATGTAATAATTTTATATGCTTGATCGAGAAATTAAGATCTCTTGCTCACTTATGCAGCGGCCCATTCTGTTGGTTTTTCTCATTGTGGCAAATTTTCCAACCGGATCTACAACTTCAGCCCTAAAAATCCAATAGACCCAACCCTTAACAAGCAATATGCAGCCCAATTACAAGGGATGTGTCCAAGGAATGTTGACCCAAGAATAGCCATTGACATGGATCCCAAAACTCCAAGGACATTTGACAATAATTACTACAAAAATTTACAACAAGGTATGGGCCTATTCACGTCAGATCAAGTGTTGTATACAGACAAAAGGTCCAA-GGGAACTGTGGATCTTTGGGCCAGTAACTCAAAATCATTCCAAAATGCTTTTGTAACTG</genome_strand>
        <mrna_strand>TGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAG.........................................................................................................................................................................GGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTG........................................................................................................TCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCCCATTCTGTTGGTTTTTCTCATTGTGGCAAATTTTCCAACCGGATCTACAACTTCAGCCCTAAAAATCCAATAGACCCAACCCTTAACAAGCAATATGCAGCCCAATTACAAGGGATGTGTCCAAGGAATGTTGACCCAAGAATAGCCATTGACATGGATCCCAAAACTCCAAGGACATTTGACAATAATTACTACAAAAATTTACAACAAGGTATGGGCCTATTCACGTCAGATCAAGTGTTGTATACAGACAAAAGGTCCAAGGGGAACTGTGGATCTTTGGGCCAGTAAACTCAAATCATTCCAAAATGCTTTTGTAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E410389" ref_strand="+" ref_description="SGN-E410389 [PPI-16-L6]">
      <seq>gttctccgtctcttcttccatgattgctttgttgagggatgtgatgcttcagtgattgtatcatcaacaccagggaacacagctgagaaggatcattcagataatctatcattggcaggagatggatttgatactgtgattaaagccaaagccgctgttgattcaaattcgcgttgtaaaaataaagtctcttgtgccgacattctcgctttagctaccagagacgtcattcagctgtctgggggaccatggtacccagtggaattaggaagacttgatgggttcacatcaaaagcatcgaatgtggaaggaaagctgccaaaaccaacattcaatctcaatcaactcaattcgatgtttgcttcacatggtctaactcaggctgacatgatcgccctttctgcggcccattctgttggattttctcattgtggcaagttttccaaccggatctacaacttcagccctcaaaatccaatagacccaacccttaacaagcaatatgcagcccaattacaagggatgtgtccaaggaatgttgatccaaggatagccattgacatggatcccaaaactccaaggacatttgacaataattactacaaaaatttacaacaaggtatgggcctattcacatcagatcaagtgctgtatacagacaaaaggtccaagggaactgtgggactctgggccagtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54391" stop="51975"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54091" g_stop="54056" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53686" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="237" r_length="201" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53581" g_stop="53416" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="403" r_length="166" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53415" i_stop="52570" i_length="846">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.927" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52569" g_stop="52275" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="698" r_length="295" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E410389" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E410389" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54091" e_stop="54056"/>
          <exon e_start="53886" e_stop="53686"/>
          <exon e_start="53581" e_stop="53416"/>
          <exon e_start="52569" e_stop="52275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTGGTAATTCTGATGTTAATTACTTTCTTTATATAACTATTAATTAATTGTTAATTGTTATATTTAGTAGTTGATCTAGCTAGCTGTTTTGAAAATTCTGCTTTCAATATCTGAAGCAAGCAAGCAGATTTTAAAACAAATATAATATATAAAAAGGTTTATTTCGCTAAAGAAAATAAAATGCTCTATATAGATAGTAATATATTACTCAGTTTCTTTTTTAGTAAGTAGAAGAGAACTAGATTATAAATTTCAAAAGTTTATTTTTTTAAAAAAAAATTATGTACTAAGTCAAACTAACTTATACTCCTTCGATTCACAAATAGTTATACTAAAAAGGATGTTCAAGATTAATTGTCAATTTAAACGTTCAAGAAATAATTAGTTTTTTTTCTTAATTCTACCCTTAATAATTACTTCATTTTAATCAATTGAAAAACTATGTAGACTTTTGATATTCTTGCTATTATAAAATTATATTAGTCAAATTATACTTTGCATTAAATTTTTCTTGTCGAAAGTACATGATTTTACTCAGATAAATAATTGTGGACGGAGAAAATATGAAATAGGATTATGAGAGTATTAAATATTATTCAAACACTCGAATCATGGTCTTAAATTCCTTTTAATAAGTCTCTTATCATTTTTCATTTGACCTTTTGCTTTTTAGCACGTGTTATTGATTCAGACGTAACCATTACTCAATTATTTGGTTCATTATACTCCAGCCAGCTCAGTAGACAAAAGGGAAAAAAATAAGTCCAGACATTATCATGAGCATCTTCCACAATGTAATAATTTTATATGCTTGATCGAGAAATTAAGATCTCTTGCTCACTTATGCAGCGGCCCATTCTGTTGGTTTTTCTCATTGTGGCAAATTTTCCAACCGGATCTACAACTTCAGCCCTAAAAATCCAATAGACCCAACCCTTAACAAGCAATATGCAGCCCAATTACAAGGGATGTGTCCAAGGAATGTTGACCCAAGAATAGCCATTGACATGGATCCCAAAACTCCAAGGACATTTGACAATAATTACTACAAAAATTTACAACAAGGTATGGGCCTATTCACGTCAGATCAAGTGTTGTATACAGACAAAAGGTCCAAGGGAACTGTGGATCTTTGGGCCAGTAA</genome_strand>
        <mrna_strand>GTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAG.........................................................................................................................................................................GGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTGATTAAAGCCAAAGCCGCTGTTGATTCAAATTCGCGTTGTAAAAATAAAGTCTCTTGTGCCGACATTCTCGCTTTAGCTACCAGAGACGTCATTCAGCTG........................................................................................................TCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGACTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGAAAGCTGCCAAAACCAACATTCAATCTCAATCAACTCAATTCGATGTTTGCTTCACATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCCCATTCTGTTGGATTTTCTCATTGTGGCAAGTTTTCCAACCGGATCTACAACTTCAGCCCTCAAAATCCAATAGACCCAACCCTTAACAAGCAATATGCAGCCCAATTACAAGGGATGTGTCCAAGGAATGTTGATCCAAGGATAGCCATTGACATGGATCCCAAAACTCCAAGGACATTTGACAATAATTACTACAAAAATTTACAACAAGGTATGGGCCTATTCACATCAGATCAAGTGCTGTATACAGACAAAAGGTCCAAGGGAACTGTGGGACTCTGGGCCAGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E206580" ref_strand="+" ref_description="SGN-E206580 [cLEC-31-O3]">
      <seq>tcgctttagccaccagagatgtcattcagctgtctgggggaccatggtacccagtggaattaggaaggcttgatgggttcacatcaaaagcatcgaatgtggaagggaagctaccaaaaccaacattcaatctcaatcaactcaattctatgtttgcctctcatggtctaactcacgctgacatgatcgccctttctgcggcccattctgttggtttttctcattgtggcaaattttccaaccggatctacaacttcagccctaaaaatccaatagacccaacccttaacaagcaatatgcagcccaattacaagggatgtgtccaaggaatgttgacccaagaatagccattgacatggatcccaaaactccaaggacatttgacaataattactacaaaaatttacaacaaggtatgggcctattcacgtcagatcaagtgttgtatacagacaaaaggtccaagggaactgtggatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54017" stop="51987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53717" g_stop="53686" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53581" g_stop="53416" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="198" r_length="166" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53415" i_stop="52570" i_length="846">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52569" g_stop="52287" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="481" r_length="283" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E206580" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206580" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53717" e_stop="53686"/>
          <exon e_start="53581" e_stop="53416"/>
          <exon e_start="52569" e_stop="52287"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTGGTAATTCTGATGTTAATTACTTTCTTTATATAACTATTAATTAATTGTTAATTGTTATATTTAGTAGTTGATCTAGCTAGCTGTTTTGAAAATTCTGCTTTCAATATCTGAAGCAAGCAAGCAGATTTTAAAACAAATATAATATATAAAAAGGTTTATTTCGCTAAAGAAAATAAAATGCTCTATATAGATAGTAATATATTACTCAGTTTCTTTTTTAGTAAGTAGAAGAGAACTAGATTATAAATTTCAAAAGTTTATTTTTTTAAAAAAAAATTATGTACTAAGTCAAACTAACTTATACTCCTTCGATTCACAAATAGTTATACTAAAAAGGATGTTCAAGATTAATTGTCAATTTAAACGTTCAAGAAATAATTAGTTTTTTTTCTTAATTCTACCCTTAATAATTACTTCATTTTAATCAATTGAAAAACTATGTAGACTTTTGATATTCTTGCTATTATAAAATTATATTAGTCAAATTATACTTTGCATTAAATTTTTCTTGTCGAAAGTACATGATTTTACTCAGATAAATAATTGTGGACGGAGAAAATATGAAATAGGATTATGAGAGTATTAAATATTATTCAAACACTCGAATCATGGTCTTAAATTCCTTTTAATAAGTCTCTTATCATTTTTCATTTGACCTTTTGCTTTTTAGCACGTGTTATTGATTCAGACGTAACCATTACTCAATTATTTGGTTCATTATACTCCAGCCAGCTCAGTAGACAAAAGGGAAAAAAATAAGTCCAGACATTATCATGAGCATCTTCCACAATGTAATAATTTTATATGCTTGATCGAGAAATTAAGATCTCTTGCTCACTTATGCAGCGGCCCATTCTGTTGGTTTTTCTCATTGTGGCAAATTTTCCAACCGGATCTACAACTTCAGCCCTAAAAATCCAATAGACCCAACCCTTAACAAGCAATATGCAGCCCAATTACAAGGGATGTGTCCAAGGAATGTTGACCCAAGAATAGCCATTGACATGGATCCCAAAACTCCAAGGACATTTGACAATAATTACTACAAAAATTTACAACAAGGTATGGGCCTATTCACGTCAGATCAAGTGTTGTATACAGACAAAAGGTCCAAGGGAACTGTGGATCT</genome_strand>
        <mrna_strand>TCGCTTTAGCCACCAGAGATGTCATTCAGCTG........................................................................................................TCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCACGCTGACATGATCGCCCTTTCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCCCATTCTGTTGGTTTTTCTCATTGTGGCAAATTTTCCAACCGGATCTACAACTTCAGCCCTAAAAATCCAATAGACCCAACCCTTAACAAGCAATATGCAGCCCAATTACAAGGGATGTGTCCAAGGAATGTTGACCCAAGAATAGCCATTGACATGGATCCCAAAACTCCAAGGACATTTGACAATAATTACTACAAAAATTTACAACAAGGTATGGGCCTATTCACGTCAGATCAAGTGTTGTATACAGACAAAAGGTCCAAGGGAACTGTGGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E212575" ref_strand="+" ref_description="SGN-E212575 [cLEC-74-N15]">
      <seq>tctccgtctcttcttccatgattgctttgttgagggatgtgatgcttcagtgattgtatcatcaacaccagggaacacagctgagaaggatcattcagataatctatcattggcaggagatggatttgatactgtaattaaagccaaagccgctgttgattcaaactcacgttgtaaaaataaagtctcttgtgctgacattctcgctttagccaccagagatgtcattcagctgtctgggggaccatggtacccagtggaattaggaaggcttgatgggttcacatcaaaagcatcgaatgtggaagggaagctaccaaaaccaacattcaatctcaatcaactcaattctatgtttgcctctcatggtctaactcaggctgacatgatcgccctttctgcggcccattctgttggtttttctcattgtggcaaattttccaaccggatctacaacttcagccctaaaaatccaatagacccaacccttaacaagcaatatgcagcccaattacaagggatgtgtccaaggaatgttgacccaagaatagccattgacatggatcccaaaactccaaggacatttgacaataattactacaaaaatttacaacaaggtatgggcctatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54389" stop="52041"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54089" g_stop="54056" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53686" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="235" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53581" g_stop="53416" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="401" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53415" i_stop="52570" i_length="846">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52569" g_stop="52341" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="630" r_length="229" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E212575" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54089" e_stop="54056"/>
          <exon e_start="53886" e_stop="53686"/>
          <exon e_start="53581" e_stop="53416"/>
          <exon e_start="52569" e_stop="52341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTGGTAATTCTGATGTTAATTACTTTCTTTATATAACTATTAATTAATTGTTAATTGTTATATTTAGTAGTTGATCTAGCTAGCTGTTTTGAAAATTCTGCTTTCAATATCTGAAGCAAGCAAGCAGATTTTAAAACAAATATAATATATAAAAAGGTTTATTTCGCTAAAGAAAATAAAATGCTCTATATAGATAGTAATATATTACTCAGTTTCTTTTTTAGTAAGTAGAAGAGAACTAGATTATAAATTTCAAAAGTTTATTTTTTTAAAAAAAAATTATGTACTAAGTCAAACTAACTTATACTCCTTCGATTCACAAATAGTTATACTAAAAAGGATGTTCAAGATTAATTGTCAATTTAAACGTTCAAGAAATAATTAGTTTTTTTTCTTAATTCTACCCTTAATAATTACTTCATTTTAATCAATTGAAAAACTATGTAGACTTTTGATATTCTTGCTATTATAAAATTATATTAGTCAAATTATACTTTGCATTAAATTTTTCTTGTCGAAAGTACATGATTTTACTCAGATAAATAATTGTGGACGGAGAAAATATGAAATAGGATTATGAGAGTATTAAATATTATTCAAACACTCGAATCATGGTCTTAAATTCCTTTTAATAAGTCTCTTATCATTTTTCATTTGACCTTTTGCTTTTTAGCACGTGTTATTGATTCAGACGTAACCATTACTCAATTATTTGGTTCATTATACTCCAGCCAGCTCAGTAGACAAAAGGGAAAAAAATAAGTCCAGACATTATCATGAGCATCTTCCACAATGTAATAATTTTATATGCTTGATCGAGAAATTAAGATCTCTTGCTCACTTATGCAGCGGCCCATTCTGTTGGTTTTTCTCATTGTGGCAAATTTTCCAACCGGATCTACAACTTCAGCCCTAAAAATCCAATAGACCCAACCCTTAACAAGCAATATGCAGCCCAATTACAAGGGATGTGTCCAAGGAATGTTGACCCAAGAATAGCCATTGACATGGATCCCAAAACTCCAAGGACATTTGACAATAATTACTACAAAAATTTACAACAAGGTATGGGCCTATT</genome_strand>
        <mrna_strand>TCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAG.........................................................................................................................................................................GGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTG........................................................................................................TCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCCCATTCTGTTGGTTTTTCTCATTGTGGCAAATTTTCCAACCGGATCTACAACTTCAGCCCTAAAAATCCAATAGACCCAACCCTTAACAAGCAATATGCAGCCCAATTACAAGGGATGTGTCCAAGGAATGTTGACCCAAGAATAGCCATTGACATGGATCCCAAAACTCCAAGGACATTTGACAATAATTACTACAAAAATTTACAACAAGGTATGGGCCTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E209125" ref_strand="+" ref_description="SGN-E209125 [cLEC-38-A18]">
      <seq>acagctgagaaggatcattcagataatctatcattggcaggagatggatttgatactgtaattaaagccaaagccgctgttgattcaaactcacgttgtaaaaataaagtctcttgtgctgacattctcgctttagccaccagagatgtcattcagctgtctgggggaccatggtacccagtggaattaggaaggcttgatgggttcacatcaaaagcatcgaatgtggaagggaagctaccaaaaccaacattcaatctcaatcaactcaattctatgtttgcctctcatggtctaactcaggctgacatgatcgccctttctgcggcccattctgttggtttttctcattgtggcaaattttccaaccggatctacaacttcagccctaaaaatccaatagacccaacccttaacaagcaatatgcagcccaattacaagggatgtgtccaaggaatgttgacccaagaatagccattgacatggatcccaaaactccaaggacatttgacaataattactacaaaaatttacaacaaggtatgggcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54144" stop="52045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53844" g_stop="53686" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53581" g_stop="53416" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="325" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53415" i_stop="52570" i_length="846">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52569" g_stop="52345" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="550" r_length="225" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E209125" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209125" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53844" e_stop="53686"/>
          <exon e_start="53581" e_stop="53416"/>
          <exon e_start="52569" e_stop="52345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTGGTAATTCTGATGTTAATTACTTTCTTTATATAACTATTAATTAATTGTTAATTGTTATATTTAGTAGTTGATCTAGCTAGCTGTTTTGAAAATTCTGCTTTCAATATCTGAAGCAAGCAAGCAGATTTTAAAACAAATATAATATATAAAAAGGTTTATTTCGCTAAAGAAAATAAAATGCTCTATATAGATAGTAATATATTACTCAGTTTCTTTTTTAGTAAGTAGAAGAGAACTAGATTATAAATTTCAAAAGTTTATTTTTTTAAAAAAAAATTATGTACTAAGTCAAACTAACTTATACTCCTTCGATTCACAAATAGTTATACTAAAAAGGATGTTCAAGATTAATTGTCAATTTAAACGTTCAAGAAATAATTAGTTTTTTTTCTTAATTCTACCCTTAATAATTACTTCATTTTAATCAATTGAAAAACTATGTAGACTTTTGATATTCTTGCTATTATAAAATTATATTAGTCAAATTATACTTTGCATTAAATTTTTCTTGTCGAAAGTACATGATTTTACTCAGATAAATAATTGTGGACGGAGAAAATATGAAATAGGATTATGAGAGTATTAAATATTATTCAAACACTCGAATCATGGTCTTAAATTCCTTTTAATAAGTCTCTTATCATTTTTCATTTGACCTTTTGCTTTTTAGCACGTGTTATTGATTCAGACGTAACCATTACTCAATTATTTGGTTCATTATACTCCAGCCAGCTCAGTAGACAAAAGGGAAAAAAATAAGTCCAGACATTATCATGAGCATCTTCCACAATGTAATAATTTTATATGCTTGATCGAGAAATTAAGATCTCTTGCTCACTTATGCAGCGGCCCATTCTGTTGGTTTTTCTCATTGTGGCAAATTTTCCAACCGGATCTACAACTTCAGCCCTAAAAATCCAATAGACCCAACCCTTAACAAGCAATATGCAGCCCAATTACAAGGGATGTGTCCAAGGAATGTTGACCCAAGAATAGCCATTGACATGGATCCCAAAACTCCAAGGACATTTGACAATAATTACTACAAAAATTTACAACAAGGTATGGGCC</genome_strand>
        <mrna_strand>ACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTG........................................................................................................TCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCCCATTCTGTTGGTTTTTCTCATTGTGGCAAATTTTCCAACCGGATCTACAACTTCAGCCCTAAAAATCCAATAGACCCAACCCTTAACAAGCAATATGCAGCCCAATTACAAGGGATGTGTCCAAGGAATGTTGACCCAAGAATAGCCATTGACATGGATCCCAAAACTCCAAGGACATTTGACAATAATTACTACAAAAATTTACAACAAGGTATGGGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E374702" ref_strand="+" ref_description="SGN-E374702 [TUS-14-H2]">
      <seq>agaaatgttgttaaccagaaattcaaacaaacttttgtcactgtccctgctgttctccgtctcttcttccatgattgctttgttgagggatgtgatgcttcagtgattgtatcatcaacaccagggaacacagctgagaaggatcattcagataatctatcattggcaggagatggatttgatactgtaattaaagccaaagccgctgttgattcaaactcacgttgtaaaaataaagtctcttgtgctgacattctcgctttagccaccagagatgtcattcagctgtctgggggaccatggtacccagtggaattaggaaggcttgatgggttcacatcaaaagcatcgaatgtggaagggaagctaccaaaaccaacattcaatctcaatcaactcaattctatgtttgcctctcatggtctaactcaggctgacatgatcgccctttctgcggcccattctgttggtttttctcattgtggcaaattttccaaccggatctacaacttcagccctaaaaatccaatagacccaacccttaacaagcaatatgcagcccaattacaagggatgtgtccaaggaatgttgacccaagaatagccattgacatggatcccaaaactccaaggacatttgacaataattactacaaaaatttacaacaaggtatgggcccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54442" stop="52043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54142" g_stop="54056" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53686" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="288" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53581" g_stop="53416" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="454" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53415" i_stop="52570" i_length="846">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52569" g_stop="52347" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="677" r_length="223" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E374702" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374702" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54142" e_stop="54056"/>
          <exon e_start="53886" e_stop="53686"/>
          <exon e_start="53581" e_stop="53416"/>
          <exon e_start="52569" e_stop="52347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTGGTAATTCTGATGTTAATTACTTTCTTTATATAACTATTAATTAATTGTTAATTGTTATATTTAGTAGTTGATCTAGCTAGCTGTTTTGAAAATTCTGCTTTCAATATCTGAAGCAAGCAAGCAGATTTTAAAACAAATATAATATATAAAAAGGTTTATTTCGCTAAAGAAAATAAAATGCTCTATATAGATAGTAATATATTACTCAGTTTCTTTTTTAGTAAGTAGAAGAGAACTAGATTATAAATTTCAAAAGTTTATTTTTTTAAAAAAAAATTATGTACTAAGTCAAACTAACTTATACTCCTTCGATTCACAAATAGTTATACTAAAAAGGATGTTCAAGATTAATTGTCAATTTAAACGTTCAAGAAATAATTAGTTTTTTTTCTTAATTCTACCCTTAATAATTACTTCATTTTAATCAATTGAAAAACTATGTAGACTTTTGATATTCTTGCTATTATAAAATTATATTAGTCAAATTATACTTTGCATTAAATTTTTCTTGTCGAAAGTACATGATTTTACTCAGATAAATAATTGTGGACGGAGAAAATATGAAATAGGATTATGAGAGTATTAAATATTATTCAAACACTCGAATCATGGTCTTAAATTCCTTTTAATAAGTCTCTTATCATTTTTCATTTGACCTTTTGCTTTTTAGCACGTGTTATTGATTCAGACGTAACCATTACTCAATTATTTGGTTCATTATACTCCAGCCAGCTCAGTAGACAAAAGGGAAAAAAATAAGTCCAGACATTATCATGAGCATCTTCCACAATGTAATAATTTTATATGCTTGATCGAGAAATTAAGATCTCTTGCTCACTTATGCAGCGGCCCATTCTGTTGGTTTTTCTCATTGTGGCAAATTTTCCAACCGGATCTACAACTTCAGCCCTAAAAATCCAATAGACCCAACCCTTAACAAGCAATATGCAGCCCAATTACAAGGGATGTGTCCAAGGAATGTTGACCCAAGAATAGCCATTGACATGGATCCCAAAACTCCAAGGACATTTGACAATAATTACTACAAAAATTTACAACAAGGTATGGG</genome_strand>
        <mrna_strand>AGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAG.........................................................................................................................................................................GGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTG........................................................................................................TCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCCCATTCTGTTGGTTTTTCTCATTGTGGCAAATTTTCCAACCGGATCTACAACTTCAGCCCTAAAAATCCAATAGACCCAACCCTTAACAAGCAATATGCAGCCCAATTACAAGGGATGTGTCCAAGGAATGTTGACCCAAGAATAGCCATTGACATGGATCCCAAAACTCCAAGGACATTTGACAATAATTACTACAAAAATTTACAACAAGGTATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E394050" ref_strand="+" ref_description="SGN-E394050 [TUS-14-G2]">
      <seq>tagaaatgttgttaaccagaaattcaaacaaacttttgtcactgtccctgctgttctccgtctcttcttccatgattgctttgttgagggatgtgatgcttcagtgattgtatcatcaacaccagggaacacagctgagaaggatcattcagataatctatcattggcaggagatggatttgatactgtaattaaagccaaagccgctgttgattcaaactcacgttgtaaaaataaagtctcttgtgctgacattctcgctttagccaccagagatgtcattcagctgtctgggggaccatggtacccagtggaattaggaaggcttgatgggttcacatcaaaagcatcgaatgtggaagggaagctaccaaaaccaacattcaatctcaatcaactcaattctatgtttgcctctcatggtctaactcaggctgacatgatcgccctttctgcggcccattctgttggtttttctcattgtggcaaattttccaaccggatctacaacttcagccctaaaaatccaatagacccaacccttaacaagcaatatgcagcccaattacaagggatgtgtccaaggaatgttgacccaagaatagccattgacatggatcccaaactccaaggacatttgacaataattactacaaaaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54443" stop="52062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54143" g_stop="54056" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53686" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="289" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53581" g_stop="53416" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="455" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53415" i_stop="52570" i_length="846">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52569" g_stop="52362" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="662" r_length="207" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E394050" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E394050" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54143" e_stop="54056"/>
          <exon e_start="53886" e_stop="53686"/>
          <exon e_start="53581" e_stop="53416"/>
          <exon e_start="52569" e_stop="52362"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTGGTAATTCTGATGTTAATTACTTTCTTTATATAACTATTAATTAATTGTTAATTGTTATATTTAGTAGTTGATCTAGCTAGCTGTTTTGAAAATTCTGCTTTCAATATCTGAAGCAAGCAAGCAGATTTTAAAACAAATATAATATATAAAAAGGTTTATTTCGCTAAAGAAAATAAAATGCTCTATATAGATAGTAATATATTACTCAGTTTCTTTTTTAGTAAGTAGAAGAGAACTAGATTATAAATTTCAAAAGTTTATTTTTTTAAAAAAAAATTATGTACTAAGTCAAACTAACTTATACTCCTTCGATTCACAAATAGTTATACTAAAAAGGATGTTCAAGATTAATTGTCAATTTAAACGTTCAAGAAATAATTAGTTTTTTTTCTTAATTCTACCCTTAATAATTACTTCATTTTAATCAATTGAAAAACTATGTAGACTTTTGATATTCTTGCTATTATAAAATTATATTAGTCAAATTATACTTTGCATTAAATTTTTCTTGTCGAAAGTACATGATTTTACTCAGATAAATAATTGTGGACGGAGAAAATATGAAATAGGATTATGAGAGTATTAAATATTATTCAAACACTCGAATCATGGTCTTAAATTCCTTTTAATAAGTCTCTTATCATTTTTCATTTGACCTTTTGCTTTTTAGCACGTGTTATTGATTCAGACGTAACCATTACTCAATTATTTGGTTCATTATACTCCAGCCAGCTCAGTAGACAAAAGGGAAAAAAATAAGTCCAGACATTATCATGAGCATCTTCCACAATGTAATAATTTTATATGCTTGATCGAGAAATTAAGATCTCTTGCTCACTTATGCAGCGGCCCATTCTGTTGGTTTTTCTCATTGTGGCAAATTTTCCAACCGGATCTACAACTTCAGCCCTAAAAATCCAATAGACCCAACCCTTAACAAGCAATATGCAGCCCAATTACAAGGGATGTGTCCAAGGAATGTTGACCCAAGAATAGCCATTGACATGGATCCCAAAACTCCAAGGACATTTGACAATAATTACTACAAAAATTT</genome_strand>
        <mrna_strand>TAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAG.........................................................................................................................................................................GGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTG........................................................................................................TCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCCCATTCTGTTGGTTTTTCTCATTGTGGCAAATTTTCCAACCGGATCTACAACTTCAGCCCTAAAAATCCAATAGACCCAACCCTTAACAAGCAATATGCAGCCCAATTACAAGGGATGTGTCCAAGGAATGTTGACCCAAGAATAGCCATTGACATGGATCCC-AAACTCCAAGGACATTTGACAATAATTACTACAAAAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E210655" ref_strand="+" ref_description="SGN-E210655 [cLEC-68-D15]">
      <seq>cagagaaattaaatgggtcgtctaaatcttcttatgtcagtattattatcaattttatcagttagtattgtgttgatgcctaacttggcatctgcacaattaaagaccaattattacgccaatatttgtcctaatgttgaatccattgttagaaatgttgttaaccagaaattcaaacaaacttttgtcactgtccctgctgttctccgtctcttcttccatgattgctttgttgagggatgtgatgcttcagtgattgtatcatcaacaccagggaacacagctgagaaggatcattcagataatctatcattggcaggagatggatttgatactgtaattaaagccaaagccgctgttgattcaaactcacgttgtaaaaataaagtctcttgtgctgacattctcgctttagccaccagagatgtcattcagctgtctgggggaccatggtacccagtggaattaggaaggcttgatgggttcacatcaaaagcatcgaatgtggaagggaagctaccaaaaccaacattcaatctcaatcaactcaattctatgtttgcctctcatggtctaactcaggctgacatgatcgccctttctgcggcccattctgttggtttttctcattgtggcaaattttccaaccggatctacaacttcagccctaaaaatccaatagacccaacccttaacaagcaatatgcagcccaattacaagggatgtgtccaaggaatgttgacccaagaatagccattgacatggatcccaaaactccaggacatttgacaataattactacaaaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54592" stop="52063"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54292" g_stop="54056" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53686" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="438" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53581" g_stop="53416" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="604" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53415" i_stop="52570" i_length="846">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52569" g_stop="52363" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="605" r_stop="810" r_length="206" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E210655" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>811</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210655" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54292" e_stop="54056"/>
          <exon e_start="53886" e_stop="53686"/>
          <exon e_start="53581" e_stop="53416"/>
          <exon e_start="52569" e_stop="52363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTGGTAATTCTGATGTTAATTACTTTCTTTATATAACTATTAATTAATTGTTAATTGTTATATTTAGTAGTTGATCTAGCTAGCTGTTTTGAAAATTCTGCTTTCAATATCTGAAGCAAGCAAGCAGATTTTAAAACAAATATAATATATAAAAAGGTTTATTTCGCTAAAGAAAATAAAATGCTCTATATAGATAGTAATATATTACTCAGTTTCTTTTTTAGTAAGTAGAAGAGAACTAGATTATAAATTTCAAAAGTTTATTTTTTTAAAAAAAAATTATGTACTAAGTCAAACTAACTTATACTCCTTCGATTCACAAATAGTTATACTAAAAAGGATGTTCAAGATTAATTGTCAATTTAAACGTTCAAGAAATAATTAGTTTTTTTTCTTAATTCTACCCTTAATAATTACTTCATTTTAATCAATTGAAAAACTATGTAGACTTTTGATATTCTTGCTATTATAAAATTATATTAGTCAAATTATACTTTGCATTAAATTTTTCTTGTCGAAAGTACATGATTTTACTCAGATAAATAATTGTGGACGGAGAAAATATGAAATAGGATTATGAGAGTATTAAATATTATTCAAACACTCGAATCATGGTCTTAAATTCCTTTTAATAAGTCTCTTATCATTTTTCATTTGACCTTTTGCTTTTTAGCACGTGTTATTGATTCAGACGTAACCATTACTCAATTATTTGGTTCATTATACTCCAGCCAGCTCAGTAGACAAAAGGGAAAAAAATAAGTCCAGACATTATCATGAGCATCTTCCACAATGTAATAATTTTATATGCTTGATCGAGAAATTAAGATCTCTTGCTCACTTATGCAGCGGCCCATTCTGTTGGTTTTTCTCATTGTGGCAAATTTTCCAACCGGATCTACAACTTCAGCCCTAAAAATCCAATAGACCCAACCCTTAACAAGCAATATGCAGCCCAATTACAAGGGATGTGTCCAAGGAATGTTGACCCAAGAATAGCCATTGACATGGATCCCAAAACTCCAAGGACATTTGACAATAATTACTACAAAAATT</genome_strand>
        <mrna_strand>CAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAG.........................................................................................................................................................................GGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTG........................................................................................................TCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCCCATTCTGTTGGTTTTTCTCATTGTGGCAAATTTTCCAACCGGATCTACAACTTCAGCCCTAAAAATCCAATAGACCCAACCCTTAACAAGCAATATGCAGCCCAATTACAAGGGATGTGTCCAAGGAATGTTGACCCAAGAATAGCCATTGACATGGATCCCAAAACTCC-AGGACATTTGACAATAATTACTACAAAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E210636" ref_strand="+" ref_description="SGN-E210636 [cLEC-68-I10]">
      <seq>tcgtctaaatcttcttatgtcagtattattatcaattttatcagttagtattgtgttgatgcctaacttggcatctgcacaattaaagaccaattattacgccaatatttgtcctaatgttgaatccattgttagaaatgttgttaaccagaaattcaaacaaacttttgtcactgtccctgctgttctccgtctcttcttccatgattgctttgttgagggatgtgatgcttcagtgattgtatcatcaacaccagggaacacagctgagaaggatcattcagataatctatcattggcaggagatggatttgatactgtaattaaagccaaagccgctgttgattcaaactcacgttgtaaaaataaagtctcttgtgctgacattctcgctttagccaccagagatgtcattcagctgtctgggggaccatggtacccagtggaattaggaaggcttgatgggttcacatcaaaagcatcgaatgtggaagggaagctaccaaaaccaacattcaatctcaatcaactcaattctatgtttgcctctcatggtctaactcaggctgacatgatcgccctttctgcggcccattctgttggtttttctcattgtggcaaattttccaaccggatctacaacttcagccctaaaaatccaatagacccaacccttaacaagcaatatgcagcccaattacaagggatgtgtccaaggaatgttgacccaagaatagccattgacatggatcccaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54575" stop="52100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54275" g_stop="54056" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53686" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="421" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53581" g_stop="53416" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="587" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53415" i_stop="52570" i_length="846">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52569" g_stop="52399" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="758" r_length="171" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E210636" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210636" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54275" e_stop="54056"/>
          <exon e_start="53886" e_stop="53686"/>
          <exon e_start="53581" e_stop="53416"/>
          <exon e_start="52569" e_stop="52399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTGGTAATTCTGATGTTAATTACTTTCTTTATATAACTATTAATTAATTGTTAATTGTTATATTTAGTAGTTGATCTAGCTAGCTGTTTTGAAAATTCTGCTTTCAATATCTGAAGCAAGCAAGCAGATTTTAAAACAAATATAATATATAAAAAGGTTTATTTCGCTAAAGAAAATAAAATGCTCTATATAGATAGTAATATATTACTCAGTTTCTTTTTTAGTAAGTAGAAGAGAACTAGATTATAAATTTCAAAAGTTTATTTTTTTAAAAAAAAATTATGTACTAAGTCAAACTAACTTATACTCCTTCGATTCACAAATAGTTATACTAAAAAGGATGTTCAAGATTAATTGTCAATTTAAACGTTCAAGAAATAATTAGTTTTTTTTCTTAATTCTACCCTTAATAATTACTTCATTTTAATCAATTGAAAAACTATGTAGACTTTTGATATTCTTGCTATTATAAAATTATATTAGTCAAATTATACTTTGCATTAAATTTTTCTTGTCGAAAGTACATGATTTTACTCAGATAAATAATTGTGGACGGAGAAAATATGAAATAGGATTATGAGAGTATTAAATATTATTCAAACACTCGAATCATGGTCTTAAATTCCTTTTAATAAGTCTCTTATCATTTTTCATTTGACCTTTTGCTTTTTAGCACGTGTTATTGATTCAGACGTAACCATTACTCAATTATTTGGTTCATTATACTCCAGCCAGCTCAGTAGACAAAAGGGAAAAAAATAAGTCCAGACATTATCATGAGCATCTTCCACAATGTAATAATTTTATATGCTTGATCGAGAAATTAAGATCTCTTGCTCACTTATGCAGCGGCCCATTCTGTTGGTTTTTCTCATTGTGGCAAATTTTCCAACCGGATCTACAACTTCAGCCCTAAAAATCCAATAGACCCAACCCTTAACAAGCAATATGCAGCCCAATTACAAGGGATGTGTCCAAGGAATGTTGACCCAAGAATAGCCATTGACATGGATCCCAAAA</genome_strand>
        <mrna_strand>TCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAG.........................................................................................................................................................................GGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTG........................................................................................................TCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCCCATTCTGTTGGTTTTTCTCATTGTGGCAAATTTTCCAACCGGATCTACAACTTCAGCCCTAAAAATCCAATAGACCCAACCCTTAACAAGCAATATGCAGCCCAATTACAAGGGATGTGTCCAAGGAATGTTGACCCAAGAATAGCCATTGACATGGATCCCAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E395881" ref_strand="+" ref_description="SGN-E395881 [TUS-18-B1]">
      <seq>ttagtattgtgttgatgcctaacttggcatctgcacaattaaagaccaattattacgccaatatttgtcctaatgttgaatccattgttagaaatgttgttaaccagaaattcaaacaaacttttgtcactgtccctgctgttctccgtctcttcttccatgattgctttgttgagggatgtgatgcttcagtgattgtatcatcaacaccagggaacacagctgagaaggatcattcagataatctatcattggcaggagatggatttgatactgtaattaaagccaaagccgctgttgattcaaactcacgttgtaaaaataaagtctcttgtgctgacattctcgctttagccaccagagatgtcattcagctgtctgggggaccatggtacccagtggaattaggaaggcttgatgggttcacatcaaaagcatcgaatgtggaagggaagctaccaaaaccaacattcaatctcaatcaactcaattctatgtttgcctctcatggtctaactcaggctgacatgatcgccctttctgcggcccattctgttggtttttctcattgtggcaaattttccaaccggatctacaacttcagccctaaaaatccaatagacccaacccttaacaagcaatatgcagcccaattacaaaggatgtgtccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54531" stop="52141"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54231" g_stop="54056" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53686" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="377" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53581" g_stop="53416" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="543" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53415" i_stop="52570" i_length="846">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52569" g_stop="52441" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="672" r_length="129" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E395881" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395881" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54231" e_stop="54056"/>
          <exon e_start="53886" e_stop="53686"/>
          <exon e_start="53581" e_stop="53416"/>
          <exon e_start="52569" e_stop="52441"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTGGTAATTCTGATGTTAATTACTTTCTTTATATAACTATTAATTAATTGTTAATTGTTATATTTAGTAGTTGATCTAGCTAGCTGTTTTGAAAATTCTGCTTTCAATATCTGAAGCAAGCAAGCAGATTTTAAAACAAATATAATATATAAAAAGGTTTATTTCGCTAAAGAAAATAAAATGCTCTATATAGATAGTAATATATTACTCAGTTTCTTTTTTAGTAAGTAGAAGAGAACTAGATTATAAATTTCAAAAGTTTATTTTTTTAAAAAAAAATTATGTACTAAGTCAAACTAACTTATACTCCTTCGATTCACAAATAGTTATACTAAAAAGGATGTTCAAGATTAATTGTCAATTTAAACGTTCAAGAAATAATTAGTTTTTTTTCTTAATTCTACCCTTAATAATTACTTCATTTTAATCAATTGAAAAACTATGTAGACTTTTGATATTCTTGCTATTATAAAATTATATTAGTCAAATTATACTTTGCATTAAATTTTTCTTGTCGAAAGTACATGATTTTACTCAGATAAATAATTGTGGACGGAGAAAATATGAAATAGGATTATGAGAGTATTAAATATTATTCAAACACTCGAATCATGGTCTTAAATTCCTTTTAATAAGTCTCTTATCATTTTTCATTTGACCTTTTGCTTTTTAGCACGTGTTATTGATTCAGACGTAACCATTACTCAATTATTTGGTTCATTATACTCCAGCCAGCTCAGTAGACAAAAGGGAAAAAAATAAGTCCAGACATTATCATGAGCATCTTCCACAATGTAATAATTTTATATGCTTGATCGAGAAATTAAGATCTCTTGCTCACTTATGCAGCGGCCCATTCTGTTGGTTTTTCTCATTGTGGCAAATTTTCCAACCGGATCTACAACTTCAGCCCTAAAAATCCAATAGACCCAACCCTTAACAAGCAATATGCAGCCCAATTACAAGGGATGTGTCCAA</genome_strand>
        <mrna_strand>TTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAG.........................................................................................................................................................................GGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTG........................................................................................................TCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCCCATTCTGTTGGTTTTTCTCATTGTGGCAAATTTTCCAACCGGATCTACAACTTCAGCCCTAAAAATCCAATAGACCCAACCCTTAACAAGCAATATGCAGCCCAATTACAAAGGATGTGTCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E573689" ref_strand="+" ref_description="SGN-E573689 [33039]">
      <seq>gagaaattaaatgggtcgtctaaatcttcttatgtcagtattattatcaattttttcagttagtattgtgttgatgcctaacttggcgtctgcacaattgaagacgaattattacgcaaatatttgtcctaatgttgaatccattgttagaaatgttgttaaccagaaattcaaacaaacttttgtcactgtccctgctgttctccgtctcttcttccatgattgctttgttgagggatgtgatgcttcagtgattgtatcatcaacaccagggaacacagctgagaaggatcattcagataatctatcattggcaggagatggatttgatactgtgattaaagccaaagccgctgttgattcaaattcgcgttgtaaaaataaagtctcttgtgccgacattctcgctttagctaccagagacgtcattcagctgtctgggggaccatggtacccagtggaattaggaagacttgatgggttcacatcaaaagcatcgaatgtggaaggaaagctgccaaaaccaacattcaatctcaatcaactcaattcgatgtttgcttcacatggtctaactcaggctgacatgatcgccctttctgcggcccattctgttggattttctcattgtggcaagttttccaaccggatctacaacttcagccctcaaaatccaatagacccacaccttaacaagcaatatgcagcccaattacaagggatgtgtcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54590" stop="52143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54290" g_stop="54056" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53686" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="436" r_length="201" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53581" g_stop="53416" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="602" r_length="166" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53415" i_stop="52570" i_length="846">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.927" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52569" g_stop="52443" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="729" r_length="127" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E573689" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E573689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54290" e_stop="54056"/>
          <exon e_start="53886" e_stop="53686"/>
          <exon e_start="53581" e_stop="53416"/>
          <exon e_start="52569" e_stop="52443"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTGGTAATTCTGATGTTAATTACTTTCTTTATATAACTATTAATTAATTGTTAATTGTTATATTTAGTAGTTGATCTAGCTAGCTGTTTTGAAAATTCTGCTTTCAATATCTGAAGCAAGCAAGCAGATTTTAAAACAAATATAATATATAAAAAGGTTTATTTCGCTAAAGAAAATAAAATGCTCTATATAGATAGTAATATATTACTCAGTTTCTTTTTTAGTAAGTAGAAGAGAACTAGATTATAAATTTCAAAAGTTTATTTTTTTAAAAAAAAATTATGTACTAAGTCAAACTAACTTATACTCCTTCGATTCACAAATAGTTATACTAAAAAGGATGTTCAAGATTAATTGTCAATTTAAACGTTCAAGAAATAATTAGTTTTTTTTCTTAATTCTACCCTTAATAATTACTTCATTTTAATCAATTGAAAAACTATGTAGACTTTTGATATTCTTGCTATTATAAAATTATATTAGTCAAATTATACTTTGCATTAAATTTTTCTTGTCGAAAGTACATGATTTTACTCAGATAAATAATTGTGGACGGAGAAAATATGAAATAGGATTATGAGAGTATTAAATATTATTCAAACACTCGAATCATGGTCTTAAATTCCTTTTAATAAGTCTCTTATCATTTTTCATTTGACCTTTTGCTTTTTAGCACGTGTTATTGATTCAGACGTAACCATTACTCAATTATTTGGTTCATTATACTCCAGCCAGCTCAGTAGACAAAAGGGAAAAAAATAAGTCCAGACATTATCATGAGCATCTTCCACAATGTAATAATTTTATATGCTTGATCGAGAAATTAAGATCTCTTGCTCACTTATGCAGCGGCCCATTCTGTTGGTTTTTCTCATTGTGGCAAATTTTCCAACCGGATCTACAACTTCAGCCCTAAAAATCCAATAGACCCAACCCTTAACAAGCAATATGCAGCCCAATTACAAGGGATGTGTCC</genome_strand>
        <mrna_strand>GAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTTTCAGTTAGTATTGTGTTGATGCCTAACTTGGCGTCTGCACAATTGAAGACGAATTATTACGCAAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAG.........................................................................................................................................................................GGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTGATTAAAGCCAAAGCCGCTGTTGATTCAAATTCGCGTTGTAAAAATAAAGTCTCTTGTGCCGACATTCTCGCTTTAGCTACCAGAGACGTCATTCAGCTG........................................................................................................TCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGACTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGAAAGCTGCCAAAACCAACATTCAATCTCAATCAACTCAATTCGATGTTTGCTTCACATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCCCATTCTGTTGGATTTTCTCATTGTGGCAAGTTTTCCAACCGGATCTACAACTTCAGCCCTCAAAATCCAATAGACCCACACCTTAACAAGCAATATGCAGCCCAATTACAAGGGATGTGTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E211380" ref_strand="+" ref_description="SGN-E211380 [cLEC-67-G11]">
      <seq>tctccgtctcttcttccatgattgctttgttgagggatgtgatgcttcagtgattgtatcatcaacaccagggaacacagctgagaaggatcattcagataatctatcattggcaggagatggatttgatactgtaattaaagccaaagccgctgttgattcaaactcacgttgtaaaaataaagtctcttgtgctgacattctcgctttagccaccagagatgtcattcagctgtctgggggaccatggtacccagtggaattaggaaggcttgatgggttcacatcaaaagcatcgaatgtggaagggaagctaccaaaaccaacattcaatctcaatcaactcaattctatgtttgcctctcatggtctaactcaggctgacatgatcgccctttctgcggcccattctgttggtttttctcattgtggcaaattttccaaccggatctacaacttcagccctaaaaatccaatagacccaacccttaacaagcaatatgcagcccaattacaagggatgtgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54389" stop="52144"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54089" g_stop="54056" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53686" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="235" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53581" g_stop="53416" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="401" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53415" i_stop="52570" i_length="846">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52569" g_stop="52444" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="527" r_length="126" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E211380" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211380" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54089" e_stop="54056"/>
          <exon e_start="53886" e_stop="53686"/>
          <exon e_start="53581" e_stop="53416"/>
          <exon e_start="52569" e_stop="52444"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTGGTAATTCTGATGTTAATTACTTTCTTTATATAACTATTAATTAATTGTTAATTGTTATATTTAGTAGTTGATCTAGCTAGCTGTTTTGAAAATTCTGCTTTCAATATCTGAAGCAAGCAAGCAGATTTTAAAACAAATATAATATATAAAAAGGTTTATTTCGCTAAAGAAAATAAAATGCTCTATATAGATAGTAATATATTACTCAGTTTCTTTTTTAGTAAGTAGAAGAGAACTAGATTATAAATTTCAAAAGTTTATTTTTTTAAAAAAAAATTATGTACTAAGTCAAACTAACTTATACTCCTTCGATTCACAAATAGTTATACTAAAAAGGATGTTCAAGATTAATTGTCAATTTAAACGTTCAAGAAATAATTAGTTTTTTTTCTTAATTCTACCCTTAATAATTACTTCATTTTAATCAATTGAAAAACTATGTAGACTTTTGATATTCTTGCTATTATAAAATTATATTAGTCAAATTATACTTTGCATTAAATTTTTCTTGTCGAAAGTACATGATTTTACTCAGATAAATAATTGTGGACGGAGAAAATATGAAATAGGATTATGAGAGTATTAAATATTATTCAAACACTCGAATCATGGTCTTAAATTCCTTTTAATAAGTCTCTTATCATTTTTCATTTGACCTTTTGCTTTTTAGCACGTGTTATTGATTCAGACGTAACCATTACTCAATTATTTGGTTCATTATACTCCAGCCAGCTCAGTAGACAAAAGGGAAAAAAATAAGTCCAGACATTATCATGAGCATCTTCCACAATGTAATAATTTTATATGCTTGATCGAGAAATTAAGATCTCTTGCTCACTTATGCAGCGGCCCATTCTGTTGGTTTTTCTCATTGTGGCAAATTTTCCAACCGGATCTACAACTTCAGCCCTAAAAATCCAATAGACCCAACCCTTAACAAGCAATATGCAGCCCAATTACAAGGGATGTGTC</genome_strand>
        <mrna_strand>TCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAG.........................................................................................................................................................................GGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTG........................................................................................................TCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCCCATTCTGTTGGTTTTTCTCATTGTGGCAAATTTTCCAACCGGATCTACAACTTCAGCCCTAAAAATCCAATAGACCCAACCCTTAACAAGCAATATGCAGCCCAATTACAAGGGATGTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E213797" ref_strand="+" ref_description="SGN-E213797 [cLEC-76-A18]">
      <seq>aattttatagccagagaaattaaatgggtcgtctaaatcttcttatgtcagtattattatcaattttatcagttagtattgtgttgatgcctaacttggcatctgcacaattaaagaccaattattacgccaatatttgtcctaatgttgaatccattgttagaaatgttgttaaccagaaattcaaacaaacttttgtcactgtccctgctgttctccgtctcttcttccatgattgctttgttgagggatgtgatgcttcagtgattgtatcatcaacaccagggaacacagctgagaaggatcattcagataatctatcattggcaggagatggatttgatactgtaattaaagccaaagccgctgttgattcaaactcacgttgtaaaaataaagtctcttgtgctgacattctcgctttagccaccagagatgtcattcagctgtctgggggaccatggtacccagtggaattaggaaggcttgatgggttcacatcaaaagcatcgaatgtggaagggaagctaccaaaaccaacattcaatctcaatcaactcaattctatgtttgcctctcatggtctaactcaggctgacatgatcgccctttctgcggcccattctgttggtttttctcattgtggcaaattttccaaccggatctacaacttcagccctaaaaatccaatagacccaacccttaacaagcaatatgcagcccaattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54603" stop="52156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54303" g_stop="54056" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53686" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="449" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53581" g_stop="53416" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="615" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53415" i_stop="52570" i_length="846">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52569" g_stop="52456" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="616" r_stop="729" r_length="114" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E213797" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54303" e_stop="54056"/>
          <exon e_start="53886" e_stop="53686"/>
          <exon e_start="53581" e_stop="53416"/>
          <exon e_start="52569" e_stop="52456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTATAGCCAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTGGTAATTCTGATGTTAATTACTTTCTTTATATAACTATTAATTAATTGTTAATTGTTATATTTAGTAGTTGATCTAGCTAGCTGTTTTGAAAATTCTGCTTTCAATATCTGAAGCAAGCAAGCAGATTTTAAAACAAATATAATATATAAAAAGGTTTATTTCGCTAAAGAAAATAAAATGCTCTATATAGATAGTAATATATTACTCAGTTTCTTTTTTAGTAAGTAGAAGAGAACTAGATTATAAATTTCAAAAGTTTATTTTTTTAAAAAAAAATTATGTACTAAGTCAAACTAACTTATACTCCTTCGATTCACAAATAGTTATACTAAAAAGGATGTTCAAGATTAATTGTCAATTTAAACGTTCAAGAAATAATTAGTTTTTTTTCTTAATTCTACCCTTAATAATTACTTCATTTTAATCAATTGAAAAACTATGTAGACTTTTGATATTCTTGCTATTATAAAATTATATTAGTCAAATTATACTTTGCATTAAATTTTTCTTGTCGAAAGTACATGATTTTACTCAGATAAATAATTGTGGACGGAGAAAATATGAAATAGGATTATGAGAGTATTAAATATTATTCAAACACTCGAATCATGGTCTTAAATTCCTTTTAATAAGTCTCTTATCATTTTTCATTTGACCTTTTGCTTTTTAGCACGTGTTATTGATTCAGACGTAACCATTACTCAATTATTTGGTTCATTATACTCCAGCCAGCTCAGTAGACAAAAGGGAAAAAAATAAGTCCAGACATTATCATGAGCATCTTCCACAATGTAATAATTTTATATGCTTGATCGAGAAATTAAGATCTCTTGCTCACTTATGCAGCGGCCCATTCTGTTGGTTTTTCTCATTGTGGCAAATTTTCCAACCGGATCTACAACTTCAGCCCTAAAAATCCAATAGACCCAACCCTTAACAAGCAATATGCAGCCCAATTAC</genome_strand>
        <mrna_strand>AATTTTATAGCCAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAG.........................................................................................................................................................................GGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTG........................................................................................................TCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCCCATTCTGTTGGTTTTTCTCATTGTGGCAAATTTTCCAACCGGATCTACAACTTCAGCCCTAAAAATCCAATAGACCCAACCCTTAACAAGCAATATGCAGCCCAATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E212984" ref_strand="+" ref_description="SGN-E212984 [cLEC-72-A8]">
      <seq>gccagagaaattaaatgggtcgtctaaatcttcttatgtcagtattattatcaattttatcagttagtattgtgttgatgcctaacttggcatctgcacaattaaagaccaattattacgccaatatttgtcctaatgttgaatccattgttagaaatgttgttaaccagaaattcaaacaaacttttgtcactgtccctgctgttctccgtctcttcttccatgattgctttgttgagggatgtgatgcttcagtgattgtatcatcaacaccagggaacacagctgagaaggatcattcagataatctatcattggcaggagatggatttgatactgtaattaaagccaaagccgctgttgattcaaactcacgttgtaaaaataaagtctcttgtgctgacattctcgctttagccaccagagatgtcattcagctgtctgggggaccatggtacccagtggaattaggaaggcttgatgggttcacatcaaaagcatcgaatgtggaagggaagctaccaaaaccaacattcaatctcaatcaactcaattctatgtttgcctctcatggtctaactcaggctgacatgatcgccctttctgcggcccattctgttggtttttctcattgtggcaaattttccaaccggatctacaacttcagccctaaaaatccaatagacccaacccttacaagcaatatgcagcccaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54594" stop="52159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54294" g_stop="54056" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53686" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="440" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53581" g_stop="53416" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="606" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53415" i_stop="52570" i_length="846">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52569" g_stop="52459" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="716" r_length="110" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E212984" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212984" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54294" e_stop="54056"/>
          <exon e_start="53886" e_stop="53686"/>
          <exon e_start="53581" e_stop="53416"/>
          <exon e_start="52569" e_stop="52459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTGGTAATTCTGATGTTAATTACTTTCTTTATATAACTATTAATTAATTGTTAATTGTTATATTTAGTAGTTGATCTAGCTAGCTGTTTTGAAAATTCTGCTTTCAATATCTGAAGCAAGCAAGCAGATTTTAAAACAAATATAATATATAAAAAGGTTTATTTCGCTAAAGAAAATAAAATGCTCTATATAGATAGTAATATATTACTCAGTTTCTTTTTTAGTAAGTAGAAGAGAACTAGATTATAAATTTCAAAAGTTTATTTTTTTAAAAAAAAATTATGTACTAAGTCAAACTAACTTATACTCCTTCGATTCACAAATAGTTATACTAAAAAGGATGTTCAAGATTAATTGTCAATTTAAACGTTCAAGAAATAATTAGTTTTTTTTCTTAATTCTACCCTTAATAATTACTTCATTTTAATCAATTGAAAAACTATGTAGACTTTTGATATTCTTGCTATTATAAAATTATATTAGTCAAATTATACTTTGCATTAAATTTTTCTTGTCGAAAGTACATGATTTTACTCAGATAAATAATTGTGGACGGAGAAAATATGAAATAGGATTATGAGAGTATTAAATATTATTCAAACACTCGAATCATGGTCTTAAATTCCTTTTAATAAGTCTCTTATCATTTTTCATTTGACCTTTTGCTTTTTAGCACGTGTTATTGATTCAGACGTAACCATTACTCAATTATTTGGTTCATTATACTCCAGCCAGCTCAGTAGACAAAAGGGAAAAAAATAAGTCCAGACATTATCATGAGCATCTTCCACAATGTAATAATTTTATATGCTTGATCGAGAAATTAAGATCTCTTGCTCACTTATGCAGCGGCCCATTCTGTTGGTTTTTCTCATTGTGGCAAATTTTCCAACCGGATCTACAACTTCAGCCCTAAAAATCCAATAGACCCAACCCTTAACAAGCAATATGCAGCCCAAT</genome_strand>
        <mrna_strand>GCCAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAG.........................................................................................................................................................................GGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTG........................................................................................................TCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCCCATTCTGTTGGTTTTTCTCATTGTGGCAAATTTTCCAACCGGATCTACAACTTCAGCCCTAAAAATCCAATAGACCCAACCCTT-ACAAGCAATATGCAGCCCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E213071" ref_strand="+" ref_description="SGN-E213071 [cLEC-72-B12]">
      <seq>agagaaattaaatgggtcgtctaaatcttcttatgtcagtattattatcaattttatcagttagtattgtgttgatgcctaacttggcatctgcacaattaaagaccaattattacgccaatatttgtcctaatgttgaatccattgttagaaatgttgttaaccagaaattcaaacaaacttttgtcactgtccctgctgttctccgtctcttcttccatgattgctttgttgagggatgtgatgcttcagtgattgtatcatcaacaccagggaacacagctgagaaggatcattcagataatctatcattggcaggagatggatttgatactgtaattaaagccaaagccgctgttgattcaaactcacgttgtaaaaataaagtctcttgtgctgacattctcgctttagccaccagagatgtcattcagctgtctgggggaccatggtacccagtggaattaggaaggcttgatgggttcacatcaaaagcatcgaatgtggaagggaagctaccaaaaccaacattcaatctcaatcaactcaattctatgtttgcctctcatggtctaactcaggctgacatgatcgccctttctgcggcccattctgttggtttttctcattgtggcaaattttccaaccggatctancacttcagccctaaaaatccaatagacccaacccttaacaagcaatatgcagcccaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54591" stop="52159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54291" g_stop="54056" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53686" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="437" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53581" g_stop="53416" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="603" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53415" i_stop="52570" i_length="846">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52569" g_stop="52459" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="714" r_length="111" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E213071" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213071" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54291" e_stop="54056"/>
          <exon e_start="53886" e_stop="53686"/>
          <exon e_start="53581" e_stop="53416"/>
          <exon e_start="52569" e_stop="52459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTGGTAATTCTGATGTTAATTACTTTCTTTATATAACTATTAATTAATTGTTAATTGTTATATTTAGTAGTTGATCTAGCTAGCTGTTTTGAAAATTCTGCTTTCAATATCTGAAGCAAGCAAGCAGATTTTAAAACAAATATAATATATAAAAAGGTTTATTTCGCTAAAGAAAATAAAATGCTCTATATAGATAGTAATATATTACTCAGTTTCTTTTTTAGTAAGTAGAAGAGAACTAGATTATAAATTTCAAAAGTTTATTTTTTTAAAAAAAAATTATGTACTAAGTCAAACTAACTTATACTCCTTCGATTCACAAATAGTTATACTAAAAAGGATGTTCAAGATTAATTGTCAATTTAAACGTTCAAGAAATAATTAGTTTTTTTTCTTAATTCTACCCTTAATAATTACTTCATTTTAATCAATTGAAAAACTATGTAGACTTTTGATATTCTTGCTATTATAAAATTATATTAGTCAAATTATACTTTGCATTAAATTTTTCTTGTCGAAAGTACATGATTTTACTCAGATAAATAATTGTGGACGGAGAAAATATGAAATAGGATTATGAGAGTATTAAATATTATTCAAACACTCGAATCATGGTCTTAAATTCCTTTTAATAAGTCTCTTATCATTTTTCATTTGACCTTTTGCTTTTTAGCACGTGTTATTGATTCAGACGTAACCATTACTCAATTATTTGGTTCATTATACTCCAGCCAGCTCAGTAGACAAAAGGGAAAAAAATAAGTCCAGACATTATCATGAGCATCTTCCACAATGTAATAATTTTATATGCTTGATCGAGAAATTAAGATCTCTTGCTCACTTATGCAGCGGCCCATTCTGTTGGTTTTTCTCATTGTGGCAAATTTTCCAACCGGATCTACAACTTCAGCCCTAAAAATCCAATAGACCCAACCCTTAACAAGCAATATGCAGCCCAAT</genome_strand>
        <mrna_strand>AGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAG.........................................................................................................................................................................GGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTG........................................................................................................TCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCCCATTCTGTTGGTTTTTCTCATTGTGGCAAATTTTCCAACCGGATCTANCACTTCAGCCCTAAAAATCCAATAGACCCAACCCTTAACAAGCAATATGCAGCCCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E210740" ref_strand="+" ref_description="SGN-E210740 [cLEC-68-G11]">
      <seq>cgctgttgattcaaactcacgttgtaaaaataaagtctcttgtgctgacattctcgctttagccaccagagatgtcattcagctgtctgggggaccatggtacccagtggaattaggaaggcttgatgggttcaacatcaaaagcatcgaatgtggaagggaagctaccaaaaccaacattcaatctcaatcaactcaattctatgtttgcctctcatggtctaactcaggctgacatgatcgccctttctgcggcccattctgttggtttttctcattgtggcaaattttccaaccggatctacaacttcaacccctaaaatccaatagacccaacccttaacaagcaatatgcagcccaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54070" stop="52159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53770" g_stop="53686" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53581" g_stop="53416" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="252" r_length="167" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53415" i_stop="52570" i_length="846">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52569" g_stop="52459" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="363" r_length="111" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E210740" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>362</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53770" e_stop="53686"/>
          <exon e_start="53581" e_stop="53416"/>
          <exon e_start="52569" e_stop="52459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTC-ACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTGGTAATTCTGATGTTAATTACTTTCTTTATATAACTATTAATTAATTGTTAATTGTTATATTTAGTAGTTGATCTAGCTAGCTGTTTTGAAAATTCTGCTTTCAATATCTGAAGCAAGCAAGCAGATTTTAAAACAAATATAATATATAAAAAGGTTTATTTCGCTAAAGAAAATAAAATGCTCTATATAGATAGTAATATATTACTCAGTTTCTTTTTTAGTAAGTAGAAGAGAACTAGATTATAAATTTCAAAAGTTTATTTTTTTAAAAAAAAATTATGTACTAAGTCAAACTAACTTATACTCCTTCGATTCACAAATAGTTATACTAAAAAGGATGTTCAAGATTAATTGTCAATTTAAACGTTCAAGAAATAATTAGTTTTTTTTCTTAATTCTACCCTTAATAATTACTTCATTTTAATCAATTGAAAAACTATGTAGACTTTTGATATTCTTGCTATTATAAAATTATATTAGTCAAATTATACTTTGCATTAAATTTTTCTTGTCGAAAGTACATGATTTTACTCAGATAAATAATTGTGGACGGAGAAAATATGAAATAGGATTATGAGAGTATTAAATATTATTCAAACACTCGAATCATGGTCTTAAATTCCTTTTAATAAGTCTCTTATCATTTTTCATTTGACCTTTTGCTTTTTAGCACGTGTTATTGATTCAGACGTAACCATTACTCAATTATTTGGTTCATTATACTCCAGCCAGCTCAGTAGACAAAAGGGAAAAAAATAAGTCCAGACATTATCATGAGCATCTTCCACAATGTAATAATTTTATATGCTTGATCGAGAAATTAAGATCTCTTGCTCACTTATGCAGCGGCCCATTCTGTTGGTTTTTCTCATTGTGGCAAATTTTCCAACCGGATCTACAACTTCAGCCCTAAAAATCCAATAGACCCAACCCTTAACAAGCAATATGCAGCCCAAT</genome_strand>
        <mrna_strand>CGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTG........................................................................................................TCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCAACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCCCATTCTGTTGGTTTTTCTCATTGTGGCAAATTTTCCAACCGGATCTACAACTTCAACCCCTAAAATCCAATAGACCCAACCCTTAACAAGCAATATGCAGCCCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E213915" ref_strand="+" ref_description="SGN-E213915 [cLEC-80-A1]">
      <seq>cttaattttatagccagagaaattaaatgggtcgtctaaatcttcttatgtcagtattattatcaattttatcagttagtattgtgttgatgcctaacttggcatctgcacaattaaagaccaattattacgccaatatttgtcctaatgttgaatccattgttagaaatgttgttaaccagaaattcaaacaaacttttgtcactgtccctgctgttctccgtctcttcttccatgattgctttgttgagggatgtgatgcttcagtgattgtatcatcaacaccagggaacacagctgagaaggatcattcagataatctatcattggcaggagatggatttgatactgtaattaaagccaaagccgctgttgattcaaactcacgttgtaaaaataaagtctcttgtgctgacattctcgctttagccaccagagatgtcattcagctgtctgggggaccatggtacccagtggaattaggaaggcttgatgggttcacatcaaaagcatcgaatgtggaagggaagctaccaaaaccaacattcaatctcaatcaactcaattctatgtttgcctctcatggtctaactcaggctgacatgatcgccctttctgcggcccattctgttggtttttctcattgtggcaaatttttcaaccggatctacaacttcagccctaaaaatccaatagacccaacccttaaaacagcatatgcagcccaatttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54606" stop="52156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54306" g_stop="54056" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="251" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53686" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="452" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53581" g_stop="53416" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="618" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53415" i_stop="52570" i_length="846">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52569" g_stop="52460" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="728" r_length="110" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E213915" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213915" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54306" e_stop="54056"/>
          <exon e_start="53886" e_stop="53686"/>
          <exon e_start="53581" e_stop="53416"/>
          <exon e_start="52569" e_stop="52460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAATTTTATAGCCAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTGGTAATTCTGATGTTAATTACTTTCTTTATATAACTATTAATTAATTGTTAATTGTTATATTTAGTAGTTGATCTAGCTAGCTGTTTTGAAAATTCTGCTTTCAATATCTGAAGCAAGCAAGCAGATTTTAAAACAAATATAATATATAAAAAGGTTTATTTCGCTAAAGAAAATAAAATGCTCTATATAGATAGTAATATATTACTCAGTTTCTTTTTTAGTAAGTAGAAGAGAACTAGATTATAAATTTCAAAAGTTTATTTTTTTAAAAAAAAATTATGTACTAAGTCAAACTAACTTATACTCCTTCGATTCACAAATAGTTATACTAAAAAGGATGTTCAAGATTAATTGTCAATTTAAACGTTCAAGAAATAATTAGTTTTTTTTCTTAATTCTACCCTTAATAATTACTTCATTTTAATCAATTGAAAAACTATGTAGACTTTTGATATTCTTGCTATTATAAAATTATATTAGTCAAATTATACTTTGCATTAAATTTTTCTTGTCGAAAGTACATGATTTTACTCAGATAAATAATTGTGGACGGAGAAAATATGAAATAGGATTATGAGAGTATTAAATATTATTCAAACACTCGAATCATGGTCTTAAATTCCTTTTAATAAGTCTCTTATCATTTTTCATTTGACCTTTTGCTTTTTAGCACGTGTTATTGATTCAGACGTAACCATTACTCAATTATTTGGTTCATTATACTCCAGCCAGCTCAGTAGACAAAAGGGAAAAAAATAAGTCCAGACATTATCATGAGCATCTTCCACAATGTAATAATTTTATATGCTTGATCGAGAAATTAAGATCTCTTGCTCACTTATGCAGCGGCCCATTCTGTTGGTTTTTCTCATTGTGGCAAATTTTCCAACCGGATCTACAACTTCAGCCCTAAAAATCCAATAGACCCAACCCTTAACAAGCAATATGCAGCCCAA</genome_strand>
        <mrna_strand>CTTAATTTTATAGCCAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAG.........................................................................................................................................................................GGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTG........................................................................................................TCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCCCATTCTGTTGGTTTTTCTCATTGTGGCAAATTTTTCAACCGGATCTACAACTTCAGCCCTAAAAATCCAATAGACCCAACCCTTAAAACAGCATATGCAGCCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E212799" ref_strand="+" ref_description="SGN-E212799 [cLEC-73-E19]">
      <seq>tagccagagaaattaaatgggtcgtctaaatcttcttatgtcagtattattatcaattttatcagttagtattgtgttgatgcctaacttggcatctgcacaattaaagaccaattattacgccaatatttgtcctaatgttgaatccattgttagaaatgttgttaaccagaaattcaaacaaacttttgtcactgtccctgctgttctccgtctcttcttccatgattgctttgttgagggatgtgatgcttcagtgattgtatcatcaacaccagggaacacagctgagaaggatcattcagataatctatcattggcaggagatggatttgatactgtaattaaagccaaagccgcggttgattcaaactcacgttgtaaaaataaagtctcttgtgctgacattctcgctttagccaccagagatgtcattcagctgtctgggggaccatggtacccagtggaattaggaaggcttgatgggttcacatcaaaagcatcgaatgtggaagggaagctaccaaaaccaacattcaatctcaatcaactcaattctatgtttgcctctcatggtctaactcaggctgacatgatcgccctttctgcggcccattctgttggtttttctcattgtggcaattttccaaccggatctacaacttcagccctaaaaatccatagacccacccttacaagcatatgcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54596" stop="52165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54296" g_stop="54056" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53686" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="442" r_length="201" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53581" g_stop="53416" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="608" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53415" i_stop="52570" i_length="846">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52569" g_stop="52465" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="708" r_length="100" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E212799" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54296" e_stop="54056"/>
          <exon e_start="53886" e_stop="53686"/>
          <exon e_start="53581" e_stop="53416"/>
          <exon e_start="52569" e_stop="52465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCCAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTGGTAATTCTGATGTTAATTACTTTCTTTATATAACTATTAATTAATTGTTAATTGTTATATTTAGTAGTTGATCTAGCTAGCTGTTTTGAAAATTCTGCTTTCAATATCTGAAGCAAGCAAGCAGATTTTAAAACAAATATAATATATAAAAAGGTTTATTTCGCTAAAGAAAATAAAATGCTCTATATAGATAGTAATATATTACTCAGTTTCTTTTTTAGTAAGTAGAAGAGAACTAGATTATAAATTTCAAAAGTTTATTTTTTTAAAAAAAAATTATGTACTAAGTCAAACTAACTTATACTCCTTCGATTCACAAATAGTTATACTAAAAAGGATGTTCAAGATTAATTGTCAATTTAAACGTTCAAGAAATAATTAGTTTTTTTTCTTAATTCTACCCTTAATAATTACTTCATTTTAATCAATTGAAAAACTATGTAGACTTTTGATATTCTTGCTATTATAAAATTATATTAGTCAAATTATACTTTGCATTAAATTTTTCTTGTCGAAAGTACATGATTTTACTCAGATAAATAATTGTGGACGGAGAAAATATGAAATAGGATTATGAGAGTATTAAATATTATTCAAACACTCGAATCATGGTCTTAAATTCCTTTTAATAAGTCTCTTATCATTTTTCATTTGACCTTTTGCTTTTTAGCACGTGTTATTGATTCAGACGTAACCATTACTCAATTATTTGGTTCATTATACTCCAGCCAGCTCAGTAGACAAAAGGGAAAAAAATAAGTCCAGACATTATCATGAGCATCTTCCACAATGTAATAATTTTATATGCTTGATCGAGAAATTAAGATCTCTTGCTCACTTATGCAGCGGCCCATTCTGTTGGTTTTTCTCATTGTGGCAAATTTTCCAACCGGATCTACAACTTCAGCCCTAAAAATCCAATAGACCCAACCCTTAACAAGCAATATGCAG</genome_strand>
        <mrna_strand>TAGCCAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAG.........................................................................................................................................................................GGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCGGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTG........................................................................................................TCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCCCATTCTGTTGGTTTTTCTCATTGTGGC-AATTTTCCAACCGGATCTACAACTTCAGCCCTAAAAATCC-ATAGACCC-ACCCTT-ACAAGC-ATATGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E579296" ref_strand="+" ref_description="SGN-E579296 [86423]">
      <seq>atttatagccagagaaattaaatgggtcgtctaaatcttcttatgtcagtattattatcaattttttcagttagtattgtgttgatgcctaacttggcatctgcacaattgaagacgaattattacgcaaatatttgtcctaatgttgaatccattgttagaaatgttgttaaccagaaattcaaacaaacttttgtcactgtccctgctgttctccgtctcttcttccatgattgctttgttgagggatgtgatgcttcagtgattgtatcatcaacaccagggaacacagctgagaaggatcattcagataatctatcattggcaggagatggatttgatactgtgattaaagccaaagccgctgttgattcaaattcgcgttgtaaaaataaagtctcttgtgccgacattctcgctttagctaccagagacgtcattcagctgtctgggggaccatggtacccagtggaattaggaagacttgatgggttcacatcaaaagcatcgaatgtggaaggaaagctgccaaaaccaacattcaatctcaatcaactcaattcgatgtttgcttcacatggtctaactcaggctgacatgatcgccctttctgcggcccattctgttggattttctcattgtggcaagttttcaaccggatctacaacttcagccctcanaatccaatagaccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54600" stop="52187"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54301" g_stop="54056" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53686" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="447" r_length="201" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53581" g_stop="53416" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="613" r_length="166" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53415" i_stop="52570" i_length="846">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.927" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52569" g_stop="52487" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="695" r_length="82" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E579296" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E579296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54301" e_stop="54056"/>
          <exon e_start="53886" e_stop="53686"/>
          <exon e_start="53581" e_stop="53416"/>
          <exon e_start="52569" e_stop="52487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATAGCCAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTGGTAATTCTGATGTTAATTACTTTCTTTATATAACTATTAATTAATTGTTAATTGTTATATTTAGTAGTTGATCTAGCTAGCTGTTTTGAAAATTCTGCTTTCAATATCTGAAGCAAGCAAGCAGATTTTAAAACAAATATAATATATAAAAAGGTTTATTTCGCTAAAGAAAATAAAATGCTCTATATAGATAGTAATATATTACTCAGTTTCTTTTTTAGTAAGTAGAAGAGAACTAGATTATAAATTTCAAAAGTTTATTTTTTTAAAAAAAAATTATGTACTAAGTCAAACTAACTTATACTCCTTCGATTCACAAATAGTTATACTAAAAAGGATGTTCAAGATTAATTGTCAATTTAAACGTTCAAGAAATAATTAGTTTTTTTTCTTAATTCTACCCTTAATAATTACTTCATTTTAATCAATTGAAAAACTATGTAGACTTTTGATATTCTTGCTATTATAAAATTATATTAGTCAAATTATACTTTGCATTAAATTTTTCTTGTCGAAAGTACATGATTTTACTCAGATAAATAATTGTGGACGGAGAAAATATGAAATAGGATTATGAGAGTATTAAATATTATTCAAACACTCGAATCATGGTCTTAAATTCCTTTTAATAAGTCTCTTATCATTTTTCATTTGACCTTTTGCTTTTTAGCACGTGTTATTGATTCAGACGTAACCATTACTCAATTATTTGGTTCATTATACTCCAGCCAGCTCAGTAGACAAAAGGGAAAAAAATAAGTCCAGACATTATCATGAGCATCTTCCACAATGTAATAATTTTATATGCTTGATCGAGAAATTAAGATCTCTTGCTCACTTATGCAGCGGCCCATTCTGTTGGTTTTTCTCATTGTGGCAAATTTTCCAACCGGATCTACAACTTCAGCCCTAAAAATCCAATAGACCCA</genome_strand>
        <mrna_strand>ATTTATAGCCAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTTTCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTGAAGACGAATTATTACGCAAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAG.........................................................................................................................................................................GGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTGATTAAAGCCAAAGCCGCTGTTGATTCAAATTCGCGTTGTAAAAATAAAGTCTCTTGTGCCGACATTCTCGCTTTAGCTACCAGAGACGTCATTCAGCTG........................................................................................................TCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGACTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGAAAGCTGCCAAAACCAACATTCAATCTCAATCAACTCAATTCGATGTTTGCTTCACATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCCCATTCTGTTGGATTTTCTCATTGTGGCAAGTTTT-CAACCGGATCTACAACTTCAGCCCTCANAATCCAATAGACCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E213557" ref_strand="+" ref_description="SGN-E213557 [cLEC-71-N11]">
      <seq>ttttatagccagagaaattaaatgggtcgtctaaatcttcttatgtcagtattattatcaattttatcagttagtattgtgttgatgcctaacttggcatctgcacaattaaagaccaattattacgccaatatttgtcctaatgttgaatccattgttagaaatgttgttaaccagaaattcaaacaaacttttgtcactgtccctgctgttctccgtctcttcttccatgattgctttgttgagggatgtgatgcttcagtgattgtatcatcaacaccagggaacacagctgagaaggatcattcagataatctatcattggcaggagatggatttgatactgtaattaaagccaaagccgctgttgattcaaactcacgttgtaaaaataaagtctcttgtgctgacattctcgctttagccaccagagatgtcattcagctgtctgggggaccatggtacccagtggaattaggaaggcttgatgggttcacatcaaaagcatcgaatgtggaagggaagctaccaaaaccaacattcaatctcaatcaactcaattctatgtttgcctctcatggtctaactcaggctgacatgatcgccctttctgcggcccattctgttggtttttctcattgtggcaaattttccaaccggatctacnacttcagccctaaaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54601" stop="52198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54301" g_stop="54056" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53686" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="447" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53581" g_stop="53416" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="613" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53415" i_stop="52570" i_length="846">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52569" g_stop="52498" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="685" r_length="72" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E213557" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213557" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54301" e_stop="54056"/>
          <exon e_start="53886" e_stop="53686"/>
          <exon e_start="53581" e_stop="53416"/>
          <exon e_start="52569" e_stop="52498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATAGCCAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTGGTAATTCTGATGTTAATTACTTTCTTTATATAACTATTAATTAATTGTTAATTGTTATATTTAGTAGTTGATCTAGCTAGCTGTTTTGAAAATTCTGCTTTCAATATCTGAAGCAAGCAAGCAGATTTTAAAACAAATATAATATATAAAAAGGTTTATTTCGCTAAAGAAAATAAAATGCTCTATATAGATAGTAATATATTACTCAGTTTCTTTTTTAGTAAGTAGAAGAGAACTAGATTATAAATTTCAAAAGTTTATTTTTTTAAAAAAAAATTATGTACTAAGTCAAACTAACTTATACTCCTTCGATTCACAAATAGTTATACTAAAAAGGATGTTCAAGATTAATTGTCAATTTAAACGTTCAAGAAATAATTAGTTTTTTTTCTTAATTCTACCCTTAATAATTACTTCATTTTAATCAATTGAAAAACTATGTAGACTTTTGATATTCTTGCTATTATAAAATTATATTAGTCAAATTATACTTTGCATTAAATTTTTCTTGTCGAAAGTACATGATTTTACTCAGATAAATAATTGTGGACGGAGAAAATATGAAATAGGATTATGAGAGTATTAAATATTATTCAAACACTCGAATCATGGTCTTAAATTCCTTTTAATAAGTCTCTTATCATTTTTCATTTGACCTTTTGCTTTTTAGCACGTGTTATTGATTCAGACGTAACCATTACTCAATTATTTGGTTCATTATACTCCAGCCAGCTCAGTAGACAAAAGGGAAAAAAATAAGTCCAGACATTATCATGAGCATCTTCCACAATGTAATAATTTTATATGCTTGATCGAGAAATTAAGATCTCTTGCTCACTTATGCAGCGGCCCATTCTGTTGGTTTTTCTCATTGTGGCAAATTTTCCAACCGGATCTACAACTTCAGCCCTAAAAATC</genome_strand>
        <mrna_strand>TTTTATAGCCAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAG.........................................................................................................................................................................GGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTG........................................................................................................TCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCCCATTCTGTTGGTTTTTCTCATTGTGGCAAATTTTCCAACCGGATCTACNACTTCAGCCCTAAAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E460494" ref_strand="+" ref_description="SGN-E460494 [cPRO-31-O18]">
      <seq>attttatagccagagaaattaaatgggtcgtctaaatcttcttatgtcagtattattatcaattttttcagttagtattgtgttgatgcctaacttggcgtctgcacaattgaagacgaattattacgcaaatatttgtcctaatgttgaatccattgttagaaatgttgttaaccagaaattcaaacaaacttttgtcactgtccctgctgttctccgtctcttcttccatgattgctttgttgagggatgtgatgcttcagtgattgtatcatcaacaccagggaacacagctgagaaggatcattcagataatctatcattggcaggagatggatttgatactgtgattaaagccaaagccgctgttgattcaaattcgcgttgtaaaaataaagtctcttgtgccgacattctcgctttagctaccagagacgtcattcagctgtctgggggaccatggtacccagtggaattaggaagacttgatgggttcacatcaaaagcatcgaatgtggaaggaaagctgccaaaaccaacattcaatctcaatcaactcaattcgatgtttgcttcacatggtctaactcaggctgacatgatcgccctttctgcggcccattctgttgggatttctcattgtgggcagttttccaccggatctacaacttcagccctcaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54602" stop="52199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54302" g_stop="54056" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53686" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="448" r_length="201" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53581" g_stop="53416" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="614" r_length="166" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53415" i_stop="52570" i_length="846">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.927" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52569" g_stop="52499" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="684" r_length="70" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E460494" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E460494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54302" e_stop="54056"/>
          <exon e_start="53886" e_stop="53686"/>
          <exon e_start="53581" e_stop="53416"/>
          <exon e_start="52569" e_stop="52499"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTATAGCCAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTGGTAATTCTGATGTTAATTACTTTCTTTATATAACTATTAATTAATTGTTAATTGTTATATTTAGTAGTTGATCTAGCTAGCTGTTTTGAAAATTCTGCTTTCAATATCTGAAGCAAGCAAGCAGATTTTAAAACAAATATAATATATAAAAAGGTTTATTTCGCTAAAGAAAATAAAATGCTCTATATAGATAGTAATATATTACTCAGTTTCTTTTTTAGTAAGTAGAAGAGAACTAGATTATAAATTTCAAAAGTTTATTTTTTTAAAAAAAAATTATGTACTAAGTCAAACTAACTTATACTCCTTCGATTCACAAATAGTTATACTAAAAAGGATGTTCAAGATTAATTGTCAATTTAAACGTTCAAGAAATAATTAGTTTTTTTTCTTAATTCTACCCTTAATAATTACTTCATTTTAATCAATTGAAAAACTATGTAGACTTTTGATATTCTTGCTATTATAAAATTATATTAGTCAAATTATACTTTGCATTAAATTTTTCTTGTCGAAAGTACATGATTTTACTCAGATAAATAATTGTGGACGGAGAAAATATGAAATAGGATTATGAGAGTATTAAATATTATTCAAACACTCGAATCATGGTCTTAAATTCCTTTTAATAAGTCTCTTATCATTTTTCATTTGACCTTTTGCTTTTTAGCACGTGTTATTGATTCAGACGTAACCATTACTCAATTATTTGGTTCATTATACTCCAGCCAGCTCAGTAGACAAAAGGGAAAAAAATAAGTCCAGACATTATCATGAGCATCTTCCACAATGTAATAATTTTATATGCTTGATCGAGAAATTAAGATCTCTTGCTCACTTATGCAGCGGCCCATTCTGTTGGTTTTTCTCATTGTGGCAAATTTTCCAACCGGATCTACAACTTCAGCCCTAAAAAT</genome_strand>
        <mrna_strand>ATTTTATAGCCAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTTTCAGTTAGTATTGTGTTGATGCCTAACTTGGCGTCTGCACAATTGAAGACGAATTATTACGCAAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAG.........................................................................................................................................................................GGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTGATTAAAGCCAAAGCCGCTGTTGATTCAAATTCGCGTTGTAAAAATAAAGTCTCTTGTGCCGACATTCTCGCTTTAGCTACCAGAGACGTCATTCAGCTG........................................................................................................TCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGACTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGAAAGCTGCCAAAACCAACATTCAATCTCAATCAACTCAATTCGATGTTTGCTTCACATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCCCATTCTGTTGGGATTTCTCATTGTGGGCAGTTTTCC-ACCGGATCTACAACTTCAGCCCTCAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E208746" ref_strand="+" ref_description="SGN-E208746 [cLEC-51-K7]">
      <seq>aatcttcttatgtcagtattattatcaattttatcagttagtattgtgttgatgcctaacttggcatctgcacaattaaagaccaattattacgccaatatttgtcctaatgttgaatccattgttagaaatgttgttaaccagaaattcaaacaaacttttgtcactgtccctgctgttctccgtctcttcttccatgattgctttgttgagggatgtgatgcttcagtgattgtatcatcaacaccagggaacacagctgagaaggatcattcagataatctatcattggcaggagatggatttgatactgtaattaaagccaaagccgctgttgattcaaactcacgttgtaaaaataaagtctcttgtgctgacattctcgctttagccaccagagatgtcattcagctgtctgggggaccatggtacccagtggaattaggaaggcttgatgggttcacatcaaaagcatcgaatgtggaagggaagctaccaaaaccaacattcaatctcaatcaactcaattctatgtttgcctctcatggtctaactcaggctgacatgatcgccctttctgcggcccattctgttggtttttctcattgcggcaaatttttcaaccggatctacaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54568" stop="52213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54268" g_stop="54056" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53686" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="414" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53581" g_stop="53416" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="580" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53415" i_stop="52570" i_length="846">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52569" g_stop="52513" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="637" r_length="57" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E208746" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208746" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54268" e_stop="54056"/>
          <exon e_start="53886" e_stop="53686"/>
          <exon e_start="53581" e_stop="53416"/>
          <exon e_start="52569" e_stop="52513"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTGGTAATTCTGATGTTAATTACTTTCTTTATATAACTATTAATTAATTGTTAATTGTTATATTTAGTAGTTGATCTAGCTAGCTGTTTTGAAAATTCTGCTTTCAATATCTGAAGCAAGCAAGCAGATTTTAAAACAAATATAATATATAAAAAGGTTTATTTCGCTAAAGAAAATAAAATGCTCTATATAGATAGTAATATATTACTCAGTTTCTTTTTTAGTAAGTAGAAGAGAACTAGATTATAAATTTCAAAAGTTTATTTTTTTAAAAAAAAATTATGTACTAAGTCAAACTAACTTATACTCCTTCGATTCACAAATAGTTATACTAAAAAGGATGTTCAAGATTAATTGTCAATTTAAACGTTCAAGAAATAATTAGTTTTTTTTCTTAATTCTACCCTTAATAATTACTTCATTTTAATCAATTGAAAAACTATGTAGACTTTTGATATTCTTGCTATTATAAAATTATATTAGTCAAATTATACTTTGCATTAAATTTTTCTTGTCGAAAGTACATGATTTTACTCAGATAAATAATTGTGGACGGAGAAAATATGAAATAGGATTATGAGAGTATTAAATATTATTCAAACACTCGAATCATGGTCTTAAATTCCTTTTAATAAGTCTCTTATCATTTTTCATTTGACCTTTTGCTTTTTAGCACGTGTTATTGATTCAGACGTAACCATTACTCAATTATTTGGTTCATTATACTCCAGCCAGCTCAGTAGACAAAAGGGAAAAAAATAAGTCCAGACATTATCATGAGCATCTTCCACAATGTAATAATTTTATATGCTTGATCGAGAAATTAAGATCTCTTGCTCACTTATGCAGCGGCCCATTCTGTTGGTTTTTCTCATTGTGGCAAATTTTCCAACCGGATCTACAACT</genome_strand>
        <mrna_strand>AATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAG.........................................................................................................................................................................GGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTG........................................................................................................TCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCCCATTCTGTTGGTTTTTCTCATTGCGGCAAATTTTTCAACCGGATCTACAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E211484" ref_strand="+" ref_description="SGN-E211484 [cLEC-67-L3]">
      <seq>attttatagccagagaaattaaatgggtcgtctaaatcttcttatgtcagtattattatcaattttatcagttagtattgtgttgatgcctaacttggcatctgcacaattaaagaccaattattacgccaatatttgtcctaatgttgaatccattgttagaaatgttgttaaccagaaattcaaacaaacttttgtcactgtccctgctgttctccgtctcttcttccatgattgctttgttgagggatgtgatgcttcagtgattgtatcatcaacaccagggaacacagctgagaaggatcattcagataatctatcattggcaggagatggatttgatactgtaattaaagccaaagccgctgttgattcaaactcacgttgtaaaaataaagtctcttgtgctgacattctcgctttagccaccagagatgtcattcagctgtctgggggaccatggtacccagtggaattaggaaggcttgatgggttcacatcaaaagcatcgaatgtggaagggaagctaccaaaaccaacattcaatctcaatcaactcaattctatgtttgcctctcatggtctaactcaggctgacatgatcgccctttctgcngcccattctgntggnttttctcattgtggcaaattttccaaccggatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54602" stop="52219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54302" g_stop="54056" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53686" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="448" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53581" g_stop="53416" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="614" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53415" i_stop="52570" i_length="846">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52569" g_stop="52519" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="665" r_length="51" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E211484" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211484" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54302" e_stop="54056"/>
          <exon e_start="53886" e_stop="53686"/>
          <exon e_start="53581" e_stop="53416"/>
          <exon e_start="52569" e_stop="52519"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTATAGCCAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTGGTAATTCTGATGTTAATTACTTTCTTTATATAACTATTAATTAATTGTTAATTGTTATATTTAGTAGTTGATCTAGCTAGCTGTTTTGAAAATTCTGCTTTCAATATCTGAAGCAAGCAAGCAGATTTTAAAACAAATATAATATATAAAAAGGTTTATTTCGCTAAAGAAAATAAAATGCTCTATATAGATAGTAATATATTACTCAGTTTCTTTTTTAGTAAGTAGAAGAGAACTAGATTATAAATTTCAAAAGTTTATTTTTTTAAAAAAAAATTATGTACTAAGTCAAACTAACTTATACTCCTTCGATTCACAAATAGTTATACTAAAAAGGATGTTCAAGATTAATTGTCAATTTAAACGTTCAAGAAATAATTAGTTTTTTTTCTTAATTCTACCCTTAATAATTACTTCATTTTAATCAATTGAAAAACTATGTAGACTTTTGATATTCTTGCTATTATAAAATTATATTAGTCAAATTATACTTTGCATTAAATTTTTCTTGTCGAAAGTACATGATTTTACTCAGATAAATAATTGTGGACGGAGAAAATATGAAATAGGATTATGAGAGTATTAAATATTATTCAAACACTCGAATCATGGTCTTAAATTCCTTTTAATAAGTCTCTTATCATTTTTCATTTGACCTTTTGCTTTTTAGCACGTGTTATTGATTCAGACGTAACCATTACTCAATTATTTGGTTCATTATACTCCAGCCAGCTCAGTAGACAAAAGGGAAAAAAATAAGTCCAGACATTATCATGAGCATCTTCCACAATGTAATAATTTTATATGCTTGATCGAGAAATTAAGATCTCTTGCTCACTTATGCAGCGGCCCATTCTGTTGGTTTTTCTCATTGTGGCAAATTTTCCAACCGGATCT</genome_strand>
        <mrna_strand>ATTTTATAGCCAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAG.........................................................................................................................................................................GGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTG........................................................................................................TCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CNGCCCATTCTGNTGGNTTTTCTCATTGTGGCAAATTTTCCAACCGGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E212191" ref_strand="+" ref_description="SGN-E212191 [cLEC-75-C15]">
      <seq>gaaattaaatgggtcgtctaaatcttcttatgtcagtattattatcaattttatcagttagtattgtgttgatgcctaacttggcatctgcacaattaaagaccaattattacgccaatatttgtcctaatgttgaatccattgttagaaatgttgttaaccagaaattcaaacaaacttttgtcactgtccctgctgttctccgtctcttcttccatgattgctttgttgagggatgtgatgcttcagtgattgtatcatcaacaccagggaacacagctgagaaggatcattcagataatctatcattggcaggagatggatttgatactgtaattaaagccaaagccgctgttgattcaaactcacgttgtaaaaataaagtctcttgtgctgacattctcgctttagccaccagagatgtcattcagctgtctgggggaccatggtacccagtggaattaggaaggcttgatgggttcacatcaaaagcatcgaatgtggaagggaagctaccaaaaccaacattcaatctcaatcaactcaattctatgtttgcctctcatggtctaactcaggctgacatgatcgccctttctgcggcccattctggtgggttttctcattgtggcaaattttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54588" stop="52230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54288" g_stop="54056" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53686" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="434" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53581" g_stop="53416" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="600" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53415" i_stop="52570" i_length="846">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52569" g_stop="52530" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="640" r_length="40" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E212191" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54288" e_stop="54056"/>
          <exon e_start="53886" e_stop="53686"/>
          <exon e_start="53581" e_stop="53416"/>
          <exon e_start="52569" e_stop="52530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTGGTAATTCTGATGTTAATTACTTTCTTTATATAACTATTAATTAATTGTTAATTGTTATATTTAGTAGTTGATCTAGCTAGCTGTTTTGAAAATTCTGCTTTCAATATCTGAAGCAAGCAAGCAGATTTTAAAACAAATATAATATATAAAAAGGTTTATTTCGCTAAAGAAAATAAAATGCTCTATATAGATAGTAATATATTACTCAGTTTCTTTTTTAGTAAGTAGAAGAGAACTAGATTATAAATTTCAAAAGTTTATTTTTTTAAAAAAAAATTATGTACTAAGTCAAACTAACTTATACTCCTTCGATTCACAAATAGTTATACTAAAAAGGATGTTCAAGATTAATTGTCAATTTAAACGTTCAAGAAATAATTAGTTTTTTTTCTTAATTCTACCCTTAATAATTACTTCATTTTAATCAATTGAAAAACTATGTAGACTTTTGATATTCTTGCTATTATAAAATTATATTAGTCAAATTATACTTTGCATTAAATTTTTCTTGTCGAAAGTACATGATTTTACTCAGATAAATAATTGTGGACGGAGAAAATATGAAATAGGATTATGAGAGTATTAAATATTATTCAAACACTCGAATCATGGTCTTAAATTCCTTTTAATAAGTCTCTTATCATTTTTCATTTGACCTTTTGCTTTTTAGCACGTGTTATTGATTCAGACGTAACCATTACTCAATTATTTGGTTCATTATACTCCAGCCAGCTCAGTAGACAAAAGGGAAAAAAATAAGTCCAGACATTATCATGAGCATCTTCCACAATGTAATAATTTTATATGCTTGATCGAGAAATTAAGATCTCTTGCTCACTTATGCAGCGGCCCATTCTGTTGGTTTTTCTCATTGTGGCAAATTTTC</genome_strand>
        <mrna_strand>GAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAG.........................................................................................................................................................................GGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTG........................................................................................................TCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCCCATTCTGGTGGGTTTTCTCATTGTGGCAAATTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E211557" ref_strand="+" ref_description="SGN-E211557 [cLEC-67-G5]">
      <seq>aattttatagccagagaaattaaatgggtcgtctaaatcttcttatgtcagtattattatcaattttatcagttagtattgtgttgatgcctaacttggcatctgcacaattaaagaccaattattacgccaatatttgtcctaatgttgaatccattgttagaaatgttgttaaccagaaattcaaacaaacttttgtcactgtccctgctgttctccgtctcttcttccatgattgctttgttgagggatgtgatgcttcagtgattgtatcatcaacaccagggaacacagctgagaaggatcattcagataatctatcattggcaggagatggatttgatactgtaattaaagccaaagccgctgttgattcaaactcacgttgtaaaaataaagtctcttgtgctgacattctcgctttagccaccagagatgtcattcagctgtctgggggaccatggtacccagtggaattangaaggcttgatgggttcacatcaaaagcatcgaatgtggaagggaagctaccaaaaccaacattcaatctcaatcaactcaattctatgtttgcctctcatggtctaactcaggctgacatgatcgccctttctgcggcccattctgttggtttttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54603" stop="52247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54303" g_stop="54056" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53686" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="449" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53581" g_stop="53416" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="615" r_length="166" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53415" i_stop="52570" i_length="846">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52569" g_stop="52547" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="616" r_stop="638" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E211557" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211557" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54303" e_stop="54056"/>
          <exon e_start="53886" e_stop="53686"/>
          <exon e_start="53581" e_stop="53416"/>
          <exon e_start="52569" e_stop="52547"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTATAGCCAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTGGTAATTCTGATGTTAATTACTTTCTTTATATAACTATTAATTAATTGTTAATTGTTATATTTAGTAGTTGATCTAGCTAGCTGTTTTGAAAATTCTGCTTTCAATATCTGAAGCAAGCAAGCAGATTTTAAAACAAATATAATATATAAAAAGGTTTATTTCGCTAAAGAAAATAAAATGCTCTATATAGATAGTAATATATTACTCAGTTTCTTTTTTAGTAAGTAGAAGAGAACTAGATTATAAATTTCAAAAGTTTATTTTTTTAAAAAAAAATTATGTACTAAGTCAAACTAACTTATACTCCTTCGATTCACAAATAGTTATACTAAAAAGGATGTTCAAGATTAATTGTCAATTTAAACGTTCAAGAAATAATTAGTTTTTTTTCTTAATTCTACCCTTAATAATTACTTCATTTTAATCAATTGAAAAACTATGTAGACTTTTGATATTCTTGCTATTATAAAATTATATTAGTCAAATTATACTTTGCATTAAATTTTTCTTGTCGAAAGTACATGATTTTACTCAGATAAATAATTGTGGACGGAGAAAATATGAAATAGGATTATGAGAGTATTAAATATTATTCAAACACTCGAATCATGGTCTTAAATTCCTTTTAATAAGTCTCTTATCATTTTTCATTTGACCTTTTGCTTTTTAGCACGTGTTATTGATTCAGACGTAACCATTACTCAATTATTTGGTTCATTATACTCCAGCCAGCTCAGTAGACAAAAGGGAAAAAAATAAGTCCAGACATTATCATGAGCATCTTCCACAATGTAATAATTTTATATGCTTGATCGAGAAATTAAGATCTCTTGCTCACTTATGCAGCGGCCCATTCTGTTGGTTTTTCT</genome_strand>
        <mrna_strand>AATTTTATAGCCAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAG.........................................................................................................................................................................GGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTG........................................................................................................TCTGGGGGACCATGGTACCCAGTGGAATTANGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCCCATTCTGTTGGTTTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E213302" ref_strand="+" ref_description="SGN-E213302 [cLEC-71-O16]">
      <seq>attttatagccagagaaattaaatgggtcgtctaaatcttcttatgtcagtattattatcaattttatcagttagtattgtgttgatgcctaacttggcatctgcacaattaaagaccaattattacgccaatatttgtcctaatgttgaatccattgttagaaatgttgttaaccagaaattcaaacaaacttttgtcactgtccctgctgttctccgtctcttcttccatgattgctttgttgagggatgtgatgcttcagtgattgtatcatcaacaccagggaacacagctgagaaggatcattcagataatctatcattggcaggagatggatttgatactgtaattaaagccaaagccgctgttgattcaaactcacgttgtaaaaataaagtctcttgtgctgacattctcgctttagccaccagagatgtcattcagctgtctgggggaccatggtacccagtggaattaggaaggcttgatgggttcacatcaaaagcatcgaatgtggaagggaagctaccaaaaccaacattcaatctcaatcaactcaattctatgtttgcctctcatggtctaactcaggctgacatgatcgccctttctgcggcccattctgttggtttttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54602" stop="52247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54302" g_stop="54056" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53686" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="448" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53581" g_stop="53416" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="614" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53415" i_stop="52570" i_length="846">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52569" g_stop="52547" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="637" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E213302" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213302" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54302" e_stop="54056"/>
          <exon e_start="53886" e_stop="53686"/>
          <exon e_start="53581" e_stop="53416"/>
          <exon e_start="52569" e_stop="52547"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTATAGCCAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTGGTAATTCTGATGTTAATTACTTTCTTTATATAACTATTAATTAATTGTTAATTGTTATATTTAGTAGTTGATCTAGCTAGCTGTTTTGAAAATTCTGCTTTCAATATCTGAAGCAAGCAAGCAGATTTTAAAACAAATATAATATATAAAAAGGTTTATTTCGCTAAAGAAAATAAAATGCTCTATATAGATAGTAATATATTACTCAGTTTCTTTTTTAGTAAGTAGAAGAGAACTAGATTATAAATTTCAAAAGTTTATTTTTTTAAAAAAAAATTATGTACTAAGTCAAACTAACTTATACTCCTTCGATTCACAAATAGTTATACTAAAAAGGATGTTCAAGATTAATTGTCAATTTAAACGTTCAAGAAATAATTAGTTTTTTTTCTTAATTCTACCCTTAATAATTACTTCATTTTAATCAATTGAAAAACTATGTAGACTTTTGATATTCTTGCTATTATAAAATTATATTAGTCAAATTATACTTTGCATTAAATTTTTCTTGTCGAAAGTACATGATTTTACTCAGATAAATAATTGTGGACGGAGAAAATATGAAATAGGATTATGAGAGTATTAAATATTATTCAAACACTCGAATCATGGTCTTAAATTCCTTTTAATAAGTCTCTTATCATTTTTCATTTGACCTTTTGCTTTTTAGCACGTGTTATTGATTCAGACGTAACCATTACTCAATTATTTGGTTCATTATACTCCAGCCAGCTCAGTAGACAAAAGGGAAAAAAATAAGTCCAGACATTATCATGAGCATCTTCCACAATGTAATAATTTTATATGCTTGATCGAGAAATTAAGATCTCTTGCTCACTTATGCAGCGGCCCATTCTGTTGGTTTTTCT</genome_strand>
        <mrna_strand>ATTTTATAGCCAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAG.........................................................................................................................................................................GGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTG........................................................................................................TCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCCCATTCTGTTGGTTTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E567036" ref_strand="+" ref_description="SGN-E567036 [11097]">
      <seq>ggctgcaggaatcggcacgaggatgggtcgtctaaatcttcttatgtcagtattattatcaattttttcagttagtattgtgttgatgcctaacttggcatctgcacaattgaagacgaattattacgcaaatatttgtcctaatgttgaatccattgttagaaatgttgttaaccagaaattcaaacaaacttttgtcactgtccctgctgttctccgtctcttcttccatgattgctttgttgagggatgtgatgcttcagtgattgtatcatcaacaccagggnaacacagctgagaaggatcattcagataatctatcattggcaggagatggatttgatactgtgattaaagccaaagccgctgttgattcaaattcgcgttgtaaaaataaagtctcttgtgccgacattctcgctttagctaccagagacgtcattcagctgtctgggggaccatggtacccagtggaattaggaagacttgatgggttcacatcaaaagcatcgaatgtggaaggaaagctgcaaaacaacattcaatctcaatcaactcaattcgatgtttgcttccacatggtctaactcaggctgacatgatcgcctttctgcggcccattctgttggattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54580" stop="52251"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54280" g_stop="54056" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="247" r_length="225" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53686" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="449" r_length="202" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53581" g_stop="53416" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="613" r_length="164" r_score="0.934"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53415" i_stop="52570" i_length="846">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.927" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52569" g_stop="52550" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="633" r_length="20" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E567036" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E567036" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54280" e_stop="54056"/>
          <exon e_start="53886" e_stop="53686"/>
          <exon e_start="53581" e_stop="53416"/>
          <exon e_start="52569" e_stop="52550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGG-AACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCT-CTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTGGTAATTCTGATGTTAATTACTTTCTTTATATAACTATTAATTAATTGTTAATTGTTATATTTAGTAGTTGATCTAGCTAGCTGTTTTGAAAATTCTGCTTTCAATATCTGAAGCAAGCAAGCAGATTTTAAAACAAATATAATATATAAAAAGGTTTATTTCGCTAAAGAAAATAAAATGCTCTATATAGATAGTAATATATTACTCAGTTTCTTTTTTAGTAAGTAGAAGAGAACTAGATTATAAATTTCAAAAGTTTATTTTTTTAAAAAAAAATTATGTACTAAGTCAAACTAACTTATACTCCTTCGATTCACAAATAGTTATACTAAAAAGGATGTTCAAGATTAATTGTCAATTTAAACGTTCAAGAAATAATTAGTTTTTTTTCTTAATTCTACCCTTAATAATTACTTCATTTTAATCAATTGAAAAACTATGTAGACTTTTGATATTCTTGCTATTATAAAATTATATTAGTCAAATTATACTTTGCATTAAATTTTTCTTGTCGAAAGTACATGATTTTACTCAGATAAATAATTGTGGACGGAGAAAATATGAAATAGGATTATGAGAGTATTAAATATTATTCAAACACTCGAATCATGGTCTTAAATTCCTTTTAATAAGTCTCTTATCATTTTTCATTTGACCTTTTGCTTTTTAGCACGTGTTATTGATTCAGACGTAACCATTACTCAATTATTTGGTTCATTATACTCCAGCCAGCTCAGTAGACAAAAGGGAAAAAAATAAGTCCAGACATTATCATGAGCATCTTCCACAATGTAATAATTTTATATGCTTGATCGAGAAATTAAGATCTCTTGCTCACTTATGCAGCGGCCCATTCTGTTGGTTTT</genome_strand>
        <mrna_strand>ATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTTTCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTGAAGACGAATTATTACGCAAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAG.........................................................................................................................................................................GGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGNAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTGATTAAAGCCAAAGCCGCTGTTGATTCAAATTCGCGTTGTAAAAATAAAGTCTCTTGTGCCGACATTCTCGCTTTAGCTACCAGAGACGTCATTCAGCTG........................................................................................................TCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGACTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGAAAGCT-GCAAAA-CAACATTCAATCTCAATCAACTCAATTCGATGTTTGCTTCCACATGGTCTAACTCAGGCTGACATGATCG-CCTTTCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCCCATTCTGTTGGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E214217" ref_strand="+" ref_description="SGN-E214217 [cLEC-77-E18]">
      <seq>aatcttcttatgtcagtattattatcaattttatcagttagtattgtgttgatgcctaacttggcatctgcacaattaaagaccaattattacgccaatatttgtcctaatgttgaatccattgttagaaatgttgttaaccagaaattcaaacaaacttttgtcactgtccctgctgttctccgtctcttcttccatgattgctttgttgagggatgtgatgcttcagtgattgtatcatcaacaccagggaacacagctgagaaggatcattcagataatctatcattggcaggagatggatttgatactgtaattaaagccaaagccgctgttgattcaaactcacgttgtaaaaataaagtctcttgtgctgacattctcgctttagccaccagagatgtcattcagctgtctgggggaccatggtacccagtggaattaggaaggcttgatgggttcacatcaaaagcatcgaatgtggaagggaagctaccaaaaccaacattcaatctcaatcaactcaattctatgtttgcctctcatggtctaactcaggctgacatgatcgccctttctgcggcccattctgttggtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54568" stop="52250"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54268" g_stop="54056" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53686" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="414" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53581" g_stop="53416" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="580" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53415" i_stop="52570" i_length="846">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52569" g_stop="52550" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="600" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E214217" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214217" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54268" e_stop="54056"/>
          <exon e_start="53886" e_stop="53686"/>
          <exon e_start="53581" e_stop="53416"/>
          <exon e_start="52569" e_stop="52550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTGGTAATTCTGATGTTAATTACTTTCTTTATATAACTATTAATTAATTGTTAATTGTTATATTTAGTAGTTGATCTAGCTAGCTGTTTTGAAAATTCTGCTTTCAATATCTGAAGCAAGCAAGCAGATTTTAAAACAAATATAATATATAAAAAGGTTTATTTCGCTAAAGAAAATAAAATGCTCTATATAGATAGTAATATATTACTCAGTTTCTTTTTTAGTAAGTAGAAGAGAACTAGATTATAAATTTCAAAAGTTTATTTTTTTAAAAAAAAATTATGTACTAAGTCAAACTAACTTATACTCCTTCGATTCACAAATAGTTATACTAAAAAGGATGTTCAAGATTAATTGTCAATTTAAACGTTCAAGAAATAATTAGTTTTTTTTCTTAATTCTACCCTTAATAATTACTTCATTTTAATCAATTGAAAAACTATGTAGACTTTTGATATTCTTGCTATTATAAAATTATATTAGTCAAATTATACTTTGCATTAAATTTTTCTTGTCGAAAGTACATGATTTTACTCAGATAAATAATTGTGGACGGAGAAAATATGAAATAGGATTATGAGAGTATTAAATATTATTCAAACACTCGAATCATGGTCTTAAATTCCTTTTAATAAGTCTCTTATCATTTTTCATTTGACCTTTTGCTTTTTAGCACGTGTTATTGATTCAGACGTAACCATTACTCAATTATTTGGTTCATTATACTCCAGCCAGCTCAGTAGACAAAAGGGAAAAAAATAAGTCCAGACATTATCATGAGCATCTTCCACAATGTAATAATTTTATATGCTTGATCGAGAAATTAAGATCTCTTGCTCACTTATGCAGCGGCCCATTCTGTTGGTTTT</genome_strand>
        <mrna_strand>AATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAG.........................................................................................................................................................................GGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTG........................................................................................................TCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCCCATTCTGTTGGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E214783" ref_strand="+" ref_description="SGN-E214783 [cLEC-79-K10]">
      <seq>aattttatagccagagaaattaaatgggtcgtctaaatcttcttatgtcagtattattatcaattttatcagttagtattgtgttgatgcctaacttggcatctgcacaattaaagaccaattattacgccaatatttgtcctaatgttgaatccattgttagaaatgttgttaaccagaaattcaaacaaacttttgtcactgtccctgctgttctccgtctcttcttccatgattgctttgttgagggatgtgatgcttcagtgattgtatcatcaacaccagggaacacagctgagaaggatcattcagataatctatcattggcaggagatggatttgatactgtaattaaagccaaagccgctgttgattcaaactcacgttgtaaaaataaagtctcttgtgctgacattctcgctttagccaccagagatgtcattcagctgtctgggggaccatggtacccagtggaattaggaaggcttgatgggttcacatcaaaagcatcgaatgtggaagggaagctaccaaaaccaacattcaatctcaatcaactcaattctatgtttgcctctcatggtctaactcaggctgacatngatcgcctttctgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54603" stop="53116"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54303" g_stop="54056" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53686" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="449" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53581" g_stop="53416" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="615" r_length="166" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E214783" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214783" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54303" e_stop="54056"/>
          <exon e_start="53886" e_stop="53686"/>
          <exon e_start="53581" e_stop="53416"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTATAGCCAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACAT-GATCGCCCTTTCTG</genome_strand>
        <mrna_strand>AATTTTATAGCCAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAG.........................................................................................................................................................................GGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTG........................................................................................................TCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATNGATCG-CCTTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E214959" ref_strand="+" ref_description="SGN-E214959 [cLEC-78-B14]">
      <seq>agccagagaaattaaatgggtcgtctaaatcttcttatgtcagtattattatcaattttatcagttagtattgtgttgatgcctaacttggcatctgcacaattaaagaccaattattacgccaatatttgtcctaatgttgaatccattgttagaaatgttgttaaccagaaattcaaacaaacttttgtcactgtccctgctgttctccgtctcttcttccatgattgctttgttgagggatgtgatgcttcagtgattgtatcatcaacaccagggaacacagctgagaaggatcattcagataatctatcattggcaggagatggatttgatactgtaattaaagccaaagccgctgttgattcaaactcacgttgtaaaaataaagtctcttgtgctgacattctcgctttagccaccagagatgtcattcagctgtctgggggaccatggtacccagtggaattaggaaggcttgatgggttcacatcaaaagcatcgaatgtggaagggaagctaccaaaaccaacattcaatctcaatcaactcaattctatgtttgcctctcatggtctaactcaggctgacatgatcgcccttttctgcggccattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54595" stop="53116"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54295" g_stop="54056" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53686" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="441" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53581" g_stop="53416" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="608" r_length="167" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E214959" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54295" e_stop="54056"/>
          <exon e_start="53886" e_stop="53686"/>
          <exon e_start="53581" e_stop="53416"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCC-TTTCTG</genome_strand>
        <mrna_strand>AGCCAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAG.........................................................................................................................................................................GGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTG........................................................................................................TCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E551298" ref_strand="+" ref_description="SGN-E551298 [TUS-50-L15]">
      <seq>attaaatgggtcgtctaaatcttcttatgtcagtattattatcaattttatcagttagtattgtgttgatgcctaacttggcatctgcacaattaaagaccaattattacgccaatatttgtcctaatgttgaatccattgttagaaatgttgttaaccagaaattcaaacaaacttttgtcactgtccctgctgttctccgtctcttcttccatgattgctttgttgagggatgtgatgcttcagtgattgtatcatcaacaccagggaacacagctgagaaggatcattcagataatctatcattggcaggagatggatttgatactgtaattaaagccaaagccgctgttgattcaaactcacgttgtaaaaataaagtctcttgtgctgacattctcgctttagccaccagagatgtcattcagctgtctgggggaccatggtacccagtggaattaggaaggcttgatgggttcacatcaaaagcatcgaatgtggaagggaagctaccaaaaccaacattcaatctcaatcaactcaattctatgtttgcctctcatggtctaactcaggctgacatgatcgccctttctgcggcccattctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54585" stop="53116"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54285" g_stop="54056" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53686" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="431" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53581" g_stop="53416" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="597" r_length="166" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E551298" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551298" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54285" e_stop="54056"/>
          <exon e_start="53886" e_stop="53686"/>
          <exon e_start="53581" e_stop="53416"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTG</genome_strand>
        <mrna_strand>ATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAG.........................................................................................................................................................................GGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTG........................................................................................................TCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E688500" ref_strand="+" ref_description="SGN-E688500 [t3_tus_50_l15]">
      <seq>attaaatgggtcgtctaaatcttcttatgtcagtattattatcaattttatcagttagtattgtgttgatgcctaacttggcatctgcacaattaaagaccaattattacgccaatatttgtcctaatgttgaatccattgttagaaatgttgttaaccagaaattcaaacaaacttttgtcactgtccctgctgttctccgtctcttcttccatgattgctttgttgagggatgtgatgcttcagtgattgtatcatcaacaccagggaacacagctgagaaggatcattcagataatctatcattggcaggagatggatttgatactgtaattaaagccaaagccgctgttgattcaaactcacgttgtaaaaataaagtctcttgtgctgacattctcgctttagccaccagagatgtcattcagctgtctgggggaccatggtacccagtggaattaggaaggcttgatgggttcacatcaaaagcatcgaatgtggaagggaagctaccaaaaccaacattcaatctcaatcaactcaattctatgtttgcctctcatggtctaactcaggctgacatgatcgccctttctgcggcccattctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54585" stop="53116"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54285" g_stop="54056" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53686" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="431" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53581" g_stop="53416" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="597" r_length="166" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E688500" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688500" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54285" e_stop="54056"/>
          <exon e_start="53886" e_stop="53686"/>
          <exon e_start="53581" e_stop="53416"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTG</genome_strand>
        <mrna_strand>ATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAG.........................................................................................................................................................................GGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTG........................................................................................................TCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E211528" ref_strand="+" ref_description="SGN-E211528 [cLEC-67-L18]">
      <seq>tcgtctaaatcttcttatgtcagtattattatcaattttatcagttagtattgtgttgatgcctaacttggcatctgcacaattaaagaccaattattacgccaatatttgtcctaatgttgaatccattgttagaaatgttgttaaccagaaattcaaacaaacttttgtcactgtccctgctgttctccgtctcttcttccatgattgctttgttgagggatgtgatgcttcagtgattgtatcatcaacaccagggaacacagctgagaaggatcattcagataatctatcattggcaggagatggatttgatactgtaattaaagccaaagccgctgttgattcaaactcacgttgtaaaaataaagtctcttgtgctgacattctcgctttagccaccagagatgtcattcagctgtctgggggaccatggtacccagtggaattaggaaggcttgatgggttcacatcaaaagcatcgaatgtggaagggaagctaccaaaaccaacattcaatctcaatcaactcaattctatgtttgcctctcatggtctaactcaggctgacatgatcgccctttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54575" stop="53116"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54275" g_stop="54056" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53686" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="421" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53581" g_stop="53416" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="587" r_length="166" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E211528" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211528" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54275" e_stop="54056"/>
          <exon e_start="53886" e_stop="53686"/>
          <exon e_start="53581" e_stop="53416"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTG</genome_strand>
        <mrna_strand>TCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAG.........................................................................................................................................................................GGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTG........................................................................................................TCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E599437" ref_strand="+" ref_description="SGN-E599437 [52425]">
      <seq>cgtctaaatcttcttatgtcagtattattatcaattttttcagttagtattgtgttgatgcctaacttggcatctgcacaattgaagacgaattattacgcaaatatttgtcctaatgttgaatccattgttagaaatgttgttaaccagaaattcaaacaaacttttgtcactgtccctgctgttctccgtctcttcttccatgattgctttgttgagggatgtgatgcttcagtgattgtatcatcaacaccagggaacacagctgagaaggatcattcagataatctatcattggcaggagatggatttgatactgtgattaaagccaaagccgctgttgattcaaattcgcgttgtaaaaataaagtctcttgtgccgacattctcgctttagctaccagagacgtcattcagctgtctgggggaccatggtacccagtggaattaggaagacttgatgggttcacatcaaaagcatcgaatgtggaaggaaagctgccaaaaccaacattcaatctcaatcaactcaattcgatgtttgcttcacatggtctaactcaggctgacatgatcgccctttctgcgggccattctgttggattttctcattgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54574" stop="53116"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54274" g_stop="54056" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53686" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="420" r_length="201" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53581" g_stop="53416" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="586" r_length="166" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E599437" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E599437" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54274" e_stop="54056"/>
          <exon e_start="53886" e_stop="53686"/>
          <exon e_start="53581" e_stop="53416"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTG</genome_strand>
        <mrna_strand>CGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTTTCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTGAAGACGAATTATTACGCAAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAG.........................................................................................................................................................................GGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTGATTAAAGCCAAAGCCGCTGTTGATTCAAATTCGCGTTGTAAAAATAAAGTCTCTTGTGCCGACATTCTCGCTTTAGCTACCAGAGACGTCATTCAGCTG........................................................................................................TCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGACTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGAAAGCTGCCAAAACCAACATTCAATCTCAATCAACTCAATTCGATGTTTGCTTCACATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E210603" ref_strand="+" ref_description="SGN-E210603 [cLEC-68-I9]">
      <seq>ctaaatcttcttatgtcaatataattatcaattttatcagttaatattgtgttgatgcctaacttggcatctgcacaattaaagaccaattattacgccaatatttgtcctaatgttgaatccattgttagaaatgttgttaaccagaaattcaaacaaacttttgtcactgaccctgctgttctccgtctcttcttccatgattgctttgttgagggatgtgatgcttctgtgattgtatcatcaacaccagggaacacagctgagaaggatcattcagataatctatcattggcaggagatggatttgatactgtaattaaagccaaagccgctgttgattcaaactcacgttgtaaaaataaagtctcttgtgctgacattctcactttagccaccaaaaatgtcattcagctgtctgggggaccatggtacccagtggaattaggaaggcttgatgggttcacatcaaaagcatcgaatgtggaagggaagctaccaaaaccaacattcgatctcaatcaactcaattctatgtttgcctctcatggtctaactccaggctgacatgatcgccctttctgcgggccattctgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54571" stop="53116"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54271" g_stop="54056" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53686" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="417" r_length="201" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53581" g_stop="53416" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="584" r_length="167" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E210603" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210603" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54271" e_stop="54056"/>
          <exon e_start="53886" e_stop="53686"/>
          <exon e_start="53581" e_stop="53416"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACT-CAGGCTGACATGATCGCCCTTTCTG</genome_strand>
        <mrna_strand>CTAAATCTTCTTATGTCAATATAATTATCAATTTTATCAGTTAATATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGACCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAG.........................................................................................................................................................................GGATGTGATGCTTCTGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCACTTTAGCCACCAAAAATGTCATTCAGCTG........................................................................................................TCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCGATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCCAGGCTGACATGATCGCCCTTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E211962" ref_strand="+" ref_description="SGN-E211962 [cLEC-66-O22]">
      <seq>cttcttatgtcagtattattatcaattttatcagttagtattgtgttgatgcctaacttggcatctgcacaattaaagaccaattattacgccaatatttgtcctaatgttgaatccattgttagaaatgttgttaaccagaaattcaaacaaacttttgtcactgtccctgctgttctccgtctcttcttccatgattgctttgttgagggatgtgatgcttcagtgattgtatcatcaacaccagggaacacagctgagaaggatcattcagataatctatcattggcaggagatggatttgatactgtaattaaagccaaagccgctgttgattcaaactcacgttgtaaaaataaagtctcttgtgctgacattctcgctttagccaccagagatgtcattcagctgtctgggggaccatggtacccagtggaattaggaaggcttgatgggttcacatcaaaagcatcgaatgtggaanggaagctaccaaaaccaacattcaatctcaatcaactcaattctatgtttgcctctcatggtctaactcaggctgacatgatcgccctttctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54565" stop="53116"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54265" g_stop="54056" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53686" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="411" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53581" g_stop="53416" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="577" r_length="166" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E211962" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211962" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54265" e_stop="54056"/>
          <exon e_start="53886" e_stop="53686"/>
          <exon e_start="53581" e_stop="53416"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTG</genome_strand>
        <mrna_strand>CTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAG.........................................................................................................................................................................GGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTG........................................................................................................TCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAANGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E484264" ref_strand="+" ref_description="SGN-E484264 [cSTE-12-P11]">
      <seq>ttttttcagttagtcttgtgttgactgccctaaccttggcgtctgcaccaattgaagaacgatattcttaccgccaaatacttgtcccaatgttgaatccattgttagaaatgttgttaaccagaaattcaaacaaaccttttgtcactgtccctgctgttctccgtctcttcttccatgaattgctttgttgagggatgtgatgccttcagtgattgtatcatcaacaccagggaacacagctgagaaggatcattcagataatctatcattggcaggagatggatttgatactgtgattaaagccaaagccgctgttgattcaaattcgcgttgtaaaaataaagtctcttgtgccgacattctcgctttagctaccagagacgtcattcagctgtctgggggaccatggtacccagtggaattaggaagacttgatgggttcacatcaaaagcatcgaatgtggaaggaaagctgccaaaaccaacattcaatctcaatcaactcatttcgatgtttgcttcacatggtctaactcangctgacatgatcgccctttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54540" stop="53116"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54240" g_stop="54056" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="0.849"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53686" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="397" r_length="202" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53581" g_stop="53416" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="563" r_length="166" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E484264" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E484264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54240" e_stop="54056"/>
          <exon e_start="53886" e_stop="53686"/>
          <exon e_start="53581" e_stop="53416"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATCAGTTAGTATTGTGTTGA-TG-CCTAA-CTTGGCATCTGCA-CAATTAAAG-ACCA-ATTATTA-CGCCA-ATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAA-CTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATG-ATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATG-CTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTG</genome_strand>
        <mrna_strand>TTTTTTCAGTTAGTCTTGTGTTGACTGCCCTAACCTTGGCGTCTGCACCAATTGAAGAACGATATTCTTACCGCCAAATACTTGTCCCAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACCTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGAATTGCTTTGTTGAG.........................................................................................................................................................................GGATGTGATGCCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTGATTAAAGCCAAAGCCGCTGTTGATTCAAATTCGCGTTGTAAAAATAAAGTCTCTTGTGCCGACATTCTCGCTTTAGCTACCAGAGACGTCATTCAGCTG........................................................................................................TCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGACTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGAAAGCTGCCAAAACCAACATTCAATCTCAATCAACTCATTTCGATGTTTGCTTCACATGGTCTAACTCANGCTGACATGATCGCCCTTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E209863" ref_strand="+" ref_description="SGN-E209863 [cLEC-52-C14]">
      <seq>aatgggtcgtctaaatcttcttatgtcagtattattatcaattttatcagttagtattgtgttgatgcctaacttggcatctgcacaattaaagaccaattattacgccaatatttgtcctaatgttgaatccattgttagaaatgttgttaaccagaaattcaaacaaacttttgtcactgtccctgctgttctccgtctcttcttccatgattgctttgttgagggatgtgatgcttcagtgattgtatcatcaacaccagggaacacagctgagaaggatcattcagataatctatcattggcaggagatggatttgatactgtaattaaagccaaagccgctgttgattcaaactcacgttgtaaaaataaagtctcttgtgctgacattctcgctttagccaccagagatgtcattcagctgtctgggggaccatggtacccagtggaattaggaaggcttgatgggttcacatcaaaagcatcgaatgtggaagggaagctaccaaaaccaacattcaatctcaatcaactcaattctatgtttgcctctcatggtctaactcaagctgacatgatcgcccctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54581" stop="53118"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54281" g_stop="54056" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53686" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="427" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53581" g_stop="53418" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="592" r_length="165" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E209863" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54281" e_stop="54056"/>
          <exon e_start="53886" e_stop="53686"/>
          <exon e_start="53581" e_stop="53418"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCG-CCCTTTC</genome_strand>
        <mrna_strand>AATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAG.........................................................................................................................................................................GGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTG........................................................................................................TCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAAGCTGACATGATCGCCCCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E310875" ref_strand="+" ref_description="SGN-E310875 [cLEZ-15-P13]">
      <seq>tcgtctaaatcttcttatgtcagtattattatcaattttatcagttagtattgtgttgatgcctaacttggcatctgcacaattaaagaccaattattacgccaatatttgtcctaatgttgaatccattgttagaaatgttgttaaccagaaattcaaacaaacttttgtcactgtccctgctgttctccgtctcttcttccatgattgctttgttgagggatgtgatgcttcagtgattgtatcatcaacaccagggaacacagctgagaaggatcattcacataatctatcattggcaggagatggatttgatactgtaattaaagccaaagccgctgttgattcaaactcacgttgtaaaaataaagtctcttgtgctgacattctcgctttagccaccagagatgtcattcagctgtctgggggaccatggtacccactggaattaggaaggcttgatgggttcacatcaaaagcatcgaatgtggaagggaagctaccaaaaccaacattcaatctcaatcaactcaattctatgtttgcctctcatggtctaactcaagctgacatgatcgccctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54575" stop="53120"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54275" g_stop="54056" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53686" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="421" r_length="201" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53581" g_stop="53420" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="583" r_length="162" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E310875" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310875" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54275" e_stop="54056"/>
          <exon e_start="53886" e_stop="53686"/>
          <exon e_start="53581" e_stop="53420"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTT</genome_strand>
        <mrna_strand>TCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAG.........................................................................................................................................................................GGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCACATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTG........................................................................................................TCTGGGGGACCATGGTACCCACTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAAGCTGACATGATCGCCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E273455" ref_strand="+" ref_description="SGN-E273455 [cLEN-3-J5]">
      <seq>taaattttcttatgtcagtattattatcaattttggcagttagtattgtgttgatgcctaactaggcatctgcacaattaaagaccaattattacgccaatatttgtcctaatgttgaatccattgttagaaatgttgttaaccagaaattcaaacaaacttttgtcactgtccctgctgttctccgtctcttcttccatgattgctttgttgagggatgtgatgcttcagtgattgtatcatcaacaccagggaacacagctgagaaggatcattcagataatctatcattggcaggagatggatttgatactgtaattaaagccaaagccgctgttgattcaaactcacgttgtaaaaataaagtctcttgtgctgacattctcgctttagccaccagagatgtcattcagctgtctgggggaccatggtacccagtggaattaggaaggcttgatgggttcacatcaaaagcatcgaatgtggaagggaagctaccaaaaccaacattcaatctcaatcaactcaattctatgtttgcctctcatggtctaactcaggctgacatgatcgccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54570" stop="53122"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54270" g_stop="54056" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53686" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="416" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53581" g_stop="53422" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="576" r_length="160" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E273455" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273455" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54270" e_stop="54056"/>
          <exon e_start="53886" e_stop="53686"/>
          <exon e_start="53581" e_stop="53422"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCC</genome_strand>
        <mrna_strand>TAAATTTTCTTATGTCAGTATTATTATCAATTTTGGCAGTTAGTATTGTGTTGATGCCTAACTAGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAG.........................................................................................................................................................................GGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTG........................................................................................................TCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E214258" ref_strand="+" ref_description="SGN-E214258 [cLEC-77-H15]">
      <seq>ttttatagccagagaaattaaatgggtcgtctaaatcttcttatgtcagtattattatcaattttatcagttagtattgtgttgatgcctaacttggcatctgcacaattaaagaccaattattacgccaatatttgtcctaatgttgaatccattgttagaaatgttgttaaccagaaattcaaacaaacttttgtcactgtccctgctgttctccgtctcttcttccatgattgctttgttgagggatgtgatgcttcagtgattgtatcatcaacaccagggaacacagctgagaaggatcattcagataatctatcattggcaggagatggatttgatactgtaattaaagccaaagccgctgttgattcaaactcacgttgtaaaaataaagtctcttgtgctgacattctcgctttagccaccagagatgtcattcagctgtctgggggaccatggtacccagtggaattaggaaggcttgatgggttcacatcaaaagcatcgaatgtggaagggaagctaccaaaaccaacattcaatctcaatcaactcaattctatgtttgcctctcatggtctaactcaggctgacatgatcgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54601" stop="53123"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54301" g_stop="54056" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53686" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="447" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53581" g_stop="53423" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="606" r_length="159" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E214258" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214258" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54301" e_stop="54056"/>
          <exon e_start="53886" e_stop="53686"/>
          <exon e_start="53581" e_stop="53423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATAGCCAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCC</genome_strand>
        <mrna_strand>TTTTATAGCCAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAG.........................................................................................................................................................................GGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTG........................................................................................................TCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E210356" ref_strand="+" ref_description="SGN-E210356 [cLEC-35-L19]">
      <seq>gccagagaaattaaatgggtcgtctaaatcttcttatgtcagtattattatcaattttatcagttagtattgtgttgatgcctaacttggcatctgcacaattaaagaccaattattacgccaatatttgtcctaatgttgaatccattgttagaaatgttgttaaccagaaattcaaacaaacttttgtcactgtccctgctgttctccgtctcttcttccatgattgctttgttgagggatgtgatgcttcagtgattgtatcatcaacaccagggaacacagctgagaaggatcattcagataatctatcattggcaggagatggatttgatactgtaattaaagccaaagccgctgttgattcaaactcacgttgtaaaaataaagtctcttgtgctgacattctcgctttagccaccagagatgtcattcagctgtctgggggaccatggtacccagtggaattaggaaagcttgatgggttcacatcaaaagcatcgaatgtggaagggaagctaccaaaaccaacattcaatctcaatcaactcaattctatgtttgcctctcatggtctaactcangctgacatgatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54594" stop="53125"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54294" g_stop="54056" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53686" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="440" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53581" g_stop="53425" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="597" r_length="157" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E210356" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54294" e_stop="54056"/>
          <exon e_start="53886" e_stop="53686"/>
          <exon e_start="53581" e_stop="53425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCG</genome_strand>
        <mrna_strand>GCCAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAG.........................................................................................................................................................................GGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTG........................................................................................................TCTGGGGGACCATGGTACCCAGTGGAATTAGGAAAGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCANGCTGACATGATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E267887" ref_strand="+" ref_description="SGN-E267887 [cLEI-12-H13]">
      <seq>tatagccagagaaattaaatgggtcgtctaaatcttcttatgtcagtattattatcaattttatcagttagtattgtgttgatgcctaacttggcatctgcacaattaaagaccaattattacgccaatatttgtcctaatgttgaatccattgttagaaatgttgttaaccacaaattcaaacaaacttttgtcactgtccctgctgttctccgtctcttcttccatgattgctttgttgagggatgtgatgcttcagtgattgtatcatcaacaccagggaacacagctgagaaggatcattcagataatctatcattggcaggagatggatttgatactgtaattaaagccaaagccgctgttgattcaaactcacgttgtaaaaataaagtctcttgtgctgacattctcgctttagccaccagagatgtcattcagctgtctgggggaccatggtacccagtggaattaggaaggcttgatgggttcacatcaaaagcatcgaatgtggaagggaagctaccaaaaccaacattcaatctcaatcaactcaattctatgtttgcctctcatggtctaactcaagctgacatgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54598" stop="53126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54298" g_stop="54056" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53686" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="444" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53581" g_stop="53426" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="600" r_length="156" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E267887" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54298" e_stop="54056"/>
          <exon e_start="53886" e_stop="53686"/>
          <exon e_start="53581" e_stop="53426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAGCCAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATC</genome_strand>
        <mrna_strand>TATAGCCAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCACAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAG.........................................................................................................................................................................GGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTG........................................................................................................TCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAAGCTGACATGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E201353" ref_strand="+" ref_description="SGN-E201353 [cLEC-4-I8]">
      <seq>ctaacttggcatctgcacaattaaagaccaattattacgccaatatttgtcctaatgttgaatccattgttagaaatgttgttaaccagaaattcaaacaaacttttgtcactgtccctgctgttctccgtctcttcttccatgattgctttgttgagggatgtgatgcttcagtgattgtatcatcaacaccagggaacacagctgagaaggatcattcagataatctatcattggcaggagatggatttgatactgtaattaaagccaaagccgctgttgattcaaactcacgttgtaaaaataaagtctcttgtgctgacattctcgctttagccaccagagatgtcattcagctgtctgggggaccatggtacccagtggaattaggaaggcttgatgggttcacatcaaaagcatcgaatgtggaagggaagctaccaaaaccaacattcaatctcaatcaactcaattctatgtttgcctctcatggtctaactcaggctgacatgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54513" stop="53126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54213" g_stop="54056" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53686" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="359" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53581" g_stop="53426" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="515" r_length="156" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E201353" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201353" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54213" e_stop="54056"/>
          <exon e_start="53886" e_stop="53686"/>
          <exon e_start="53581" e_stop="53426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATC</genome_strand>
        <mrna_strand>CTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAG.........................................................................................................................................................................GGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTG........................................................................................................TCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E208038" ref_strand="+" ref_description="SGN-E208038 [cLEC-34-E16]">
      <seq>taattttatagccagagaaattaaatgggtcgtctaaatcttgttatgtcagtattattatcaattttatcagttagtattgtgttgatgcctaacttggcatctgcacaattaaagaccaattattacgccaatatttgtcctaatgttgaatccattgttagaaatgttgttaaccagaaattcaaacaaacttttgtcactgtccctgctgttctccgtctcttcttccatgattgctttgttgagggatgtgatgcttcagtgattgtatcatcaacaccagggaacacagctgagaaggatcattcagataatctatcattggcaggagatggatttgatactgtaattaaagccaaagccgctgttgattcaaactcacgttgtaaaaataaagtctcttgtgctgacattctcgctttagccaccagagatgtcattcatctgtctgggggaccatggtacccagtggaattaggaaggcttgatgggttcacatcaaaagcatcgaatgtggaaaggaagctaccaaaaccaacattcaatctcaatcaactcaattctatgtttgcctctcatggtctaactcaagctgacatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54604" stop="53128"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54304" g_stop="54056" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="249" r_length="249" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53686" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="450" r_length="201" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53581" g_stop="53428" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="604" r_length="154" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E208038" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54304" e_stop="54056"/>
          <exon e_start="53886" e_stop="53686"/>
          <exon e_start="53581" e_stop="53428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTTTATAGCCAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGA</genome_strand>
        <mrna_strand>TAATTTTATAGCCAGAGAAATTAAATGGGTCGTCTAAATCTTGTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAG.........................................................................................................................................................................GGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCATCTG........................................................................................................TCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAAGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAAGCTGACATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E449314" ref_strand="+" ref_description="SGN-E449314 [cSTS-6-G19]">
      <seq>cccttatataatcttttgctctcaattaaacatttccataacccattgtacttaattttatagccagagaaattaaatgggtcgtctaaatcttcttatgtcagtattattatcaattttttcagttagtattgtgttgatgcctaacttggcgtctgcacaattgaagacgaattattacgcaaatatttgtcctaatgttgaatccattgttagaaatgttgttaaccagaaattcaaacaaacttttgtcactgtccctgctgttctccgtctcttcttccatgattgctttgttgagggatgtgatgcttcagtgattgtatcatcaacaccagggaacacagctgagaaggatcattcagataatctatcattggcaggagatggatttgatactgtgattaaagccaaagccgctgttgattcaaattcgcgttgtaaaaataaagtctcttgtgccgacattctcgctttagctaccagagacgtcattcagctgtctgggggaccatggtacccagtggaattaggaagacttgatgggttcacatcaaaagcatcgaatgtggaaggaaagctgccaaaaccaacattcaatctcaatcaactcaattcgatgtttgcttcacatggtctaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54651" stop="53140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54355" g_stop="54056" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53686" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="502" r_length="201" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53581" g_stop="53440" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="644" r_length="142" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E449314" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E449314" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54355" e_stop="54056"/>
          <exon e_start="53886" e_stop="53686"/>
          <exon e_start="53581" e_stop="53440"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCTATATAATCCTTT-CTCTCAATTAAACATTTGCATAACCCATTGTACTTAATTTTATAGCCAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTC</genome_strand>
        <mrna_strand>CCCTTATATAATCTTTTGCTCTCAATTAAACATTTCCATAACCCATTGTACTTAATTTTATAGCCAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTTTCAGTTAGTATTGTGTTGATGCCTAACTTGGCGTCTGCACAATTGAAGACGAATTATTACGCAAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAG.........................................................................................................................................................................GGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTGATTAAAGCCAAAGCCGCTGTTGATTCAAATTCGCGTTGTAAAAATAAAGTCTCTTGTGCCGACATTCTCGCTTTAGCTACCAGAGACGTCATTCAGCTG........................................................................................................TCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGACTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGAAAGCTGCCAAAACCAACATTCAATCTCAATCAACTCAATTCGATGTTTGCTTCACATGGTCTAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E406759" ref_strand="+" ref_description="SGN-E406759 [PPI-4-L2]">
      <seq>ccttactttcaagcccgagaaattaaacgggtcgtctaaatcttcttctgtcagtattcttctcaattttttcagttagtattgtgttgttgcccaacttggcatctgcacaattaaagaccaaattattacgcgaatagttgtcctaatgttgaatccattgttagaaatgttgttaaccagaaattcaaacaaacttttgtcactgtccctgctgttctccgtctcttcttccattgattgctttgttgagggatgtgatgcttcagtgattgtatcatcaacaccagggaacacagctgagaaggatcattcagataatctatcattggcaggagaatggatttgatactgtgattaaagccaaagccgctgttgattcaaattcgcgttgtaaaaataaagtctcttgtgctgacattcttgctttagctaccagagacgtcattcagctgtctgggggaccatggtacccagtggaattaggaaggcttgatgggttcacatcanaagcatcgaatgntgaangaaagctgccaaaaccaacattcaatctcaatcaactcaattctatgtttgcctctcatggtctaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54606" stop="53140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54307" g_stop="54056" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53686" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="455" r_length="202" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53581" g_stop="53440" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="597" r_length="142" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E406759" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E406759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54307" e_stop="54056"/>
          <exon e_start="53886" e_stop="53686"/>
          <exon e_start="53581" e_stop="53440"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTAATTTTATAGCCAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACC-AATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCA-TGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAG-ATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTC</genome_strand>
        <mrna_strand>CCTTACTTTCA-AGCCCGAGAAATTAAACGGGTCGTCTAAATCTTCTTCTGTCAGTATTCTTCTCAATTTTTTCAGTTAGTATTGTGTTGTTGCCCAACTTGGCATCTGCACAATTAAAGACCAAATTATTACGCGAATAGTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATTGATTGCTTTGTTGAG.........................................................................................................................................................................GGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGAATGGATTTGATACTGTGATTAAAGCCAAAGCCGCTGTTGATTCAAATTCGCGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTTGCTTTAGCTACCAGAGACGTCATTCAGCTG........................................................................................................TCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCANAAGCATCGAATGNTGAANGAAAGCTGCCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E214977" ref_strand="+" ref_description="SGN-E214977 [cLEC-78-J12]">
      <seq>atagccagagaaattaaatgggtcgtctaaatcttcttatgtcagtattattatcaattttatcagttagtattgtgttgatgcctaacttggcatctgcacaattaaagaccaattattacgccaatatttgtcctaatgttgaatccattgttagaaatgttgttaaccagaaattcaaacaaacttttgtcactgtccctgctgttctccgtctcttcttccatgattgctttgttgagggatgtgatgcttcagtgattgtatcatcaacaccagggaacacagctgagaaggatcattcagataatctatcattggcaggagatggatttgatactgtaattaaagccaaagccgctgttgattcaaactcacgttgtaaaaataaagtctcttgtgctgacattctcgctttagccaccagagatgtcattcagctgtctgggggaccatggtacccagtggaattangaaggcttgatgggttcacatcaaaagcatcgaatgtggaaaggaagctaccaaaaccaacattcaatctcaatcaactcaattctatgtttgcctctcatggtctaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54597" stop="53142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54297" g_stop="54056" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53686" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="443" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53581" g_stop="53442" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="583" r_length="140" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E214977" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54297" e_stop="54056"/>
          <exon e_start="53886" e_stop="53686"/>
          <exon e_start="53581" e_stop="53442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGCCAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAAC</genome_strand>
        <mrna_strand>ATAGCCAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAG.........................................................................................................................................................................GGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTG........................................................................................................TCTGGGGGACCATGGTACCCAGTGGAATTANGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAAGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E211997" ref_strand="+" ref_description="SGN-E211997 [cLEC-66-L5]">
      <seq>tagccagagaaattaaatgggtcgtctaaatcttcttatgtcagtattattatcaattttatcagttagtattgtgttgatgcctaacttggcatctgcacaattaaagaccaattattacgccaatatttgtcctaatgttgaatccattgttagaaatgttgttaaccagaaattcaaacaaacttttgtcactgtccctgctgttctccgtctcttcttccatgattgctttgttgagggatgtgatgcttcagtgattgtatcatcaacaccagggaacacagctgagaaggatcattcagataatctatcattggcaggagatggatttgatactgtaattaaagccaaagccgctgttgattcaaactcacgttgtaaaaataaagtctcttgtgctgacattctcgctttagccaccagagatgtcattcagctgtctgggggaacatggntaccagtggaattangaaggcttgatgggttcacatcaaaagcatcgaatgtggaagggaagctaccnaaacaacattnncatctcatcaactcaattctatgtttgcctctcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54596" stop="53149"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54296" g_stop="54056" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53686" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="442" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53581" g_stop="53449" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="574" r_length="132" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E211997" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211997" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54296" e_stop="54056"/>
          <exon e_start="53886" e_stop="53686"/>
          <exon e_start="53581" e_stop="53449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCCAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCA-ATCTCAATCAACTCAATTCTATGTTTGCCTCTCATG</genome_strand>
        <mrna_strand>TAGCCAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAG.........................................................................................................................................................................GGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTG........................................................................................................TCTGGGGGAACATGGNTACCAGTGGAATTANGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCNAAA-CAACATTNNCATCTC-ATCAACTCAATTCTATGTTTGCCTCTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E212881" ref_strand="+" ref_description="SGN-E212881 [cLEC-73-H3]">
      <seq>gccagagaaattaaatgggtcgtctaaatcttcttatgtcagtattattatcaattttatcagttagtattgtgttgatgcctaacttggcatctgcacaattaaagaccaattattacgccaatatttgtcctaatgttgaatccattgttagaaatgttgttaaccagaaattcaaacaaacttttgtcactgtccctgctgttctccgtctcttcttccatgattgctttgttgagggatgtgatgcttcagtgattgtatcatcaacaccagggaacacagctgagaaggatcattcagataatctatcattggcaggagatggatttgatactgtaattaaagccaaagccgctgttgattcaaactcacgttgtaaaaataaagtctcttgtgctgacattctcgctttagccaccagagatgtcattcagctgtctgggggaccatggtacccagtggaattatgaaggcttgatgggttcacatccaaagcatcgaatgtggaagggaagctaccaaaaccaacattcaatctcaatcaactcaattctatgtttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54594" stop="53157"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54294" g_stop="54056" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53686" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="440" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53581" g_stop="53457" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="565" r_length="125" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E212881" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212881" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54294" e_stop="54056"/>
          <exon e_start="53886" e_stop="53686"/>
          <exon e_start="53581" e_stop="53457"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGC</genome_strand>
        <mrna_strand>GCCAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAG.........................................................................................................................................................................GGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTG........................................................................................................TCTGGGGGACCATGGTACCCAGTGGAATTATGAAGGCTTGATGGGTTCACATCCAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E273473" ref_strand="+" ref_description="SGN-E273473 [cLEN-3-P5]">
      <seq>aataaaatgggtcgtctaaatcttcttatgtcagtattattatcaattttatcagttagtattgtgttgatgcctaacttggcatctgcacaattaaagaccaattattacgccaatatttgtcctaatgttgaatccattgttagaaatgttgttaaccagaaattcaaacaaacttttgtcactgtccctgctgttctacgtctcttcttccatgattgctttgttgagggatgtgatgcttcactgattgtatcatcaacaccagggaacacaggtgagaaggatcattcagataatctatcattggcaggagatggatttgatactgtaattaaagccaaagccggtgttgattcaaactcacgttgtaaaaataaagtctcttgggctgacattctcgctttagccaccagagatgtcattcagctgtctgggggaccatggtacccagtggaattaggaaggcttgatggggtcacatcaaaagcatcgaatgtggaagggaagctaccaaaaccaacattcaatctcaatcaactcaattctatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54586" stop="53161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54286" g_stop="54056" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53686" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="432" r_length="201" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53581" g_stop="53461" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="553" r_length="121" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E273473" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273473" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54286" e_stop="54056"/>
          <exon e_start="53886" e_stop="53686"/>
          <exon e_start="53581" e_stop="53461"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGT</genome_strand>
        <mrna_strand>AATAAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTACGTCTCTTCTTCCATGATTGCTTTGTTGAG.........................................................................................................................................................................GGATGTGATGCTTCACTGATTGTATCATCAACACCAGGGAACACAGGTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGGTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGGGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTG........................................................................................................TCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGGTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E202401" ref_strand="+" ref_description="SGN-E202401 [cLEC-6-N24]">
      <seq>tgaatccattgttagaaatgttgttaaccagaaattcaaacaaacttttgtcactgtccctgctgttctccgtctcttcttccatgattgctttgttgagggatgtgatgcttcagtgattgtatcatcaacaccagggaacacagctgagaaggatcattcagataatctatcattggcaggagatggatttgatactgtaattaaagccaaagccgctgttgattcaaactcacgttgtaaaaataaagtctcttgtgctgacattctcgctttagccaccagagatgtcattcagctgtctgggggaccatggtacccagtggaattaggaaggcttgatgggttcacatcaaaagcatcgaatgtggaagggaagctaccaaaaccaacattcaatctcaatcaactcaattctatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54455" stop="53161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54155" g_stop="54056" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53686" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="301" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53581" g_stop="53461" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="422" r_length="121" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E202401" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54155" e_stop="54056"/>
          <exon e_start="53886" e_stop="53686"/>
          <exon e_start="53581" e_stop="53461"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGT</genome_strand>
        <mrna_strand>TGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAG.........................................................................................................................................................................GGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTG........................................................................................................TCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E266147" ref_strand="+" ref_description="SGN-E266147 [cLEI-6-F14]">
      <seq>agaaattaaatgggtcgtctaaatcttcttatgtcagtattattatcaattttatcagttagtattgtgttgatgcctaacttggcatctgcacaattaaagaccaattattacgccaatatttgtcctaatgttgaatccattgttagaaatgttgttaaccagaaattcaaacaaacttttgtcactgtccctgctgttctccgtctcttcttccatgattgctttgttgagggatgtgatgcttcagtgattgtatcatcaacaccagggaacacagctgagaaggatcattcagataatctatcattggcaggagatggatttgatactgtaattaaagccaaagccgctgttgattcaaactcacgttgtaaaaataaagtctcttgtgctgacattctcgctttagccaccagagatgtcattcagctgtctgggggaccatggtacccagtggaattaggaaggcttgatgggttcacatcaaaagcatcgaatgtggaagggaagctaccaaaaccaacattcaatctcaatcaactcaattctatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54589" stop="53162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54289" g_stop="54056" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53686" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="435" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53581" g_stop="53462" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="555" r_length="120" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E266147" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266147" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54289" e_stop="54056"/>
          <exon e_start="53886" e_stop="53686"/>
          <exon e_start="53581" e_stop="53462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATG</genome_strand>
        <mrna_strand>AGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAG.........................................................................................................................................................................GGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTG........................................................................................................TCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E202654" ref_strand="+" ref_description="SGN-E202654 [cLEC-19-F7]">
      <seq>atagccagagaaattaaatgggtcgtctaaatcttcttatgtcagtattattatcaattttatcagttagtattgtgttgatgcctaacttggcatctgcacaattaaagaccaattattacgccaatatttgtcctaatgttgaatccattgttagaaatgttgttaaccagaaattcaaacaaacttttgtcactgtccctgctgttctccgtctcttcttccatgattgctttgttgagggatgtgatgcttcagtgattgtatcatcaacaccagggaacacagctgagaaggatcattcagataatctatcattggcaggagatggatttgatactgtaattaaagccaaagccgctgttgattcaaactcacgttgtaaaaataaagtctcttgtgctgacattctcgctttagccaccagagatgtcattcagctgtctgggggaccatggtacccagtggaattaggaaggcttgatgggttcacatcaaaagcatcgaatgtggaagggaagctaccaaaaccaacattcaatctcaatcaactcaattctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54597" stop="53163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54297" g_stop="54056" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53686" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="443" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53581" g_stop="53463" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="562" r_length="119" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E202654" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54297" e_stop="54056"/>
          <exon e_start="53886" e_stop="53686"/>
          <exon e_start="53581" e_stop="53463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGCCAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTAT</genome_strand>
        <mrna_strand>ATAGCCAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAG.........................................................................................................................................................................GGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTG........................................................................................................TCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E204045" ref_strand="+" ref_description="SGN-E204045 [cLEC-22-I20]">
      <seq>ttaaatgggtcgtctaaatcttcttatgtcagtattattatcaattttatcagttagtattgtgttgatgcctaacttggcatctgcacaattaaagaccaattattacgccaatatttgtcctaatgttgaatccattgttagaaatgttgttaaccagaaattcaaacaaacttttgtcactgtccctgctgttctccgtctcttcttccatgattgctttgttgagggatgtgatgcttcagtgattgtatcatcaacaccagggaacacagctgagaaggatcattcagataatctatcattggcaggagatggatttgatactgtaattaaagccaaagccgctgttgattcaaactcacgttgtaaaaataaagtctcttgtgctgacattctcgctttagccaccagagatgtcattcagctgtctgggggaccatggtacccagtggaattaggaaggcttgatgggttcacatcaaaagcatcgaatgtggaagggaagctaccaaaaccaacattcaatctcaatcaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54584" stop="53171"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54284" g_stop="54056" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53686" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="430" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53581" g_stop="53471" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="541" r_length="111" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E204045" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204045" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54284" e_stop="54056"/>
          <exon e_start="53886" e_stop="53686"/>
          <exon e_start="53581" e_stop="53471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTC</genome_strand>
        <mrna_strand>TTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAG.........................................................................................................................................................................GGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTG........................................................................................................TCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E201993" ref_strand="+" ref_description="SGN-E201993 [cLEC-7-M4]">
      <seq>gatgcctaacttggcatctgcacaattaaagaccaattattacgccaatatttgtcctaatgttgaatccattgttagaaatgttgttaaccagaaattcaaacaaacttttgtcactgtccctgctgttctccgtctcttcttccatgattgctttgttgagggatgtgatgcttcagtgattgtatcatcaacaccagggaacacagctgagaaggatcattcagataatctatcattggcaggagatggatttgatactgtaattaaagccaaagccgctgttgattcaaactcacgttgtaaaaataaagtctcttgtgctgacattctcgctttagccaccagagatgtcattcagctgtctgggggaccatggtacccagtggaattaggaaggcttgatgggttcacatcaaaagcatcgaatgtggaagggaagctaccaaaaccaacattcaatctcaatcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54518" stop="53173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54218" g_stop="54056" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53686" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="364" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53581" g_stop="53473" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="473" r_length="109" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E201993" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201993" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54218" e_stop="54056"/>
          <exon e_start="53886" e_stop="53686"/>
          <exon e_start="53581" e_stop="53473"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAAC</genome_strand>
        <mrna_strand>GATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAG.........................................................................................................................................................................GGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTG........................................................................................................TCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E207438" ref_strand="+" ref_description="SGN-E207438 [cLEC-36-A3]">
      <seq>ttaattttatagccagagaaattaaatgggtcgtctaaatcttcttatgtcagtattattatcaattttatcagttagtattgtgttgatgcctaacttggcatctgcacaattaaagaccaattattacgccaatatttgtcctaatgttgaatccattgttagaaatgttgttaaccagaaattcaaacaaacttttgtcactgtccctgctgttctccgtctcttcttccatgattgctttgttgagggatgtgatgcttcagtgattgtatcatcaacaccagggaacacagctgagaaggatcattcagataatctatcattggcaggagatggatttgatactgtaattaaagccaaagccgctgttgattcaaactcacgttgtaaaaataaagtctcttgtgctgacattctcgctttagccaccagagatgtcattcagctgtctgggggaccatggtacccagtggaattaggaaggcttgatgggttcacatcaaaagcatcgaatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54605" stop="53213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54305" g_stop="54056" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53686" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="451" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53581" g_stop="53513" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="520" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E207438" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207438" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54305" e_stop="54056"/>
          <exon e_start="53886" e_stop="53686"/>
          <exon e_start="53581" e_stop="53513"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATTTTATAGCCAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTG</genome_strand>
        <mrna_strand>TTAATTTTATAGCCAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAG.........................................................................................................................................................................GGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTG........................................................................................................TCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E404602" ref_strand="+" ref_description="SGN-E404602 [PPC-14-H15]">
      <seq>ttatagccagagaaattaaatgggtcgtctaaatcttcttatgtcagtattattatcaattttttcagttagtattgtgttgatgcctaacttggcgtctgcacaattgaagacgaattattacgcaaatatttgtcctaatgttgaatccattgttagaaatgttgttaaccagaaattcaaacaaacttttgtcactgtccctgctgttctccgtctcttcttccatgattgctttgttgagggatgtgatgcttcagtgattgtatcatcaacaccagggaacacagctgagaaggatcattcagataatctatcattggcaagagatggatttgatactgtgattaaagccaaagccgctgttgnattcaattcgcgttgtaaaaataaagtctcttgtgccgacattctcgctttagctaccagagacgtcattcagctgtctggggggacatgggtaccagtggaattaggaagacttgatgggttcacatcaaaagcatcgaatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54599" stop="53213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54299" g_stop="54056" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53686" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="445" r_length="201" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53581" g_stop="53513" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="514" r_length="69" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E404602" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E404602" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54299" e_stop="54056"/>
          <exon e_start="53886" e_stop="53686"/>
          <exon e_start="53581" e_stop="53513"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATAGCCAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTG-ATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTG</genome_strand>
        <mrna_strand>TTATAGCCAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTTTCAGTTAGTATTGTGTTGATGCCTAACTTGGCGTCTGCACAATTGAAGACGAATTATTACGCAAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAG.........................................................................................................................................................................GGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAAGAGATGGATTTGATACTGTGATTAAAGCCAAAGCCGCTGTTGNATTC-AATTCGCGTTGTAAAAATAAAGTCTCTTGTGCCGACATTCTCGCTTTAGCTACCAGAGACGTCATTCAGCTG........................................................................................................TCTGGGGGGACATGGGTACCAGTGGAATTAGGAAGACTTGATGGGTTCACATCAAAAGCATCGAATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E211900" ref_strand="+" ref_description="SGN-E211900 [cLEC-66-K11]">
      <seq>ttggcatctgcacaattaaagaccaattattacgccaatatttgtcctaatgttgaatccattgttagaaatgttgttaaccagaaattcaaacaaacttttgtcactgtccctgctgttctccgtctcttcttccatgattgctttgttgagggatgtgatgcttcagtgattgtatcatcaacaccagggaacacagctgagaaggatcattcagataatctatcattggcaggagatggatttgatactgtaattaaagccaaagccgctgttgattcaaactcacgttgtaaaaataaagtctcttgtgctgacattctcgctttagccaccagagatgtcattcagctgtctgggggaccatggtacccagtggaattangaaagcttgatgggttcacatcaaaagcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54508" stop="53221"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54208" g_stop="54056" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53686" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="354" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53581" g_stop="53521" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="415" r_length="61" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E211900" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211900" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54208" e_stop="54056"/>
          <exon e_start="53886" e_stop="53686"/>
          <exon e_start="53581" e_stop="53521"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCAT</genome_strand>
        <mrna_strand>TTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAG.........................................................................................................................................................................GGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTG........................................................................................................TCTGGGGGACCATGGTACCCAGTGGAATTANGAAAGCTTGATGGGTTCACATCAAAAGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E447142" ref_strand="+" ref_description="SGN-E447142 [cSTA-24-P19]">
      <seq>cgaggattaaatgggtcgtctaaatcttcttatgtcagtattattatcaattttttcagttagtattgtgttgatgcctaaccttggcatctgcacaattgaagacgaattattaccgcaaatatttgtcctaatgttgaatccattgttagaaatgttgttaaccagaaattcaaacaaacttttgtcactgtccgtgctgttctccgtctcttcttccatgattgctttgttgagggatgtgatgcttcagtgattgtatcatcaacaccagggaacacagctgagaaggatcattcagataatctatcattggcaggagatggatttgatactgtgattaaagccaaagccgctgttgattcaaattcgcgttgtaaaaataaagtctcttgtgccgacattctcgctttagctaccagagacgtcattcagctgtctgggggaccatggtacccagtggaattaggaagacttgatgggttcacatcaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54585" stop="53224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54291" g_stop="54056" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53686" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="438" r_length="201" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53581" g_stop="53524" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="496" r_length="58" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E447142" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E447142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54291" e_stop="54056"/>
          <exon e_start="53886" e_stop="53686"/>
          <exon e_start="53581" e_stop="53524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAAC-TTGGCATCTGCACAATTAAAGACCAATTATTA-CGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAG</genome_strand>
        <mrna_strand>CGAGGA-TTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTTTCAGTTAGTATTGTGTTGATGCCTAACCTTGGCATCTGCACAATTGAAGACGAATTATTACCGCAAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCGTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAG.........................................................................................................................................................................GGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTGATTAAAGCCAAAGCCGCTGTTGATTCAAATTCGCGTTGTAAAAATAAAGTCTCTTGTGCCGACATTCTCGCTTTAGCTACCAGAGACGTCATTCAGCTG........................................................................................................TCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGACTTGATGGGTTCACATCAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E204024" ref_strand="+" ref_description="SGN-E204024 [cLEC-22-C4]">
      <seq>taattttatagccagagaaattaaatgggtcgtctaaatcttcttatgtcagtattattatcaattttatcagttagtattgtgttgatgcctaacttggcatctgcacaattaaagaccaattattacgccaatatttgtcctaatgttgaatccattgttagaaatgttgttaaccagaaattcaaacaaacttttgtcactgtccctgctgttctccgtctcttcttccatgattgctttgttgagggatgtgatgcttcagtgattgtatcatcaacaccagggaacacagctgagaaggatcattcagataatctatcattggcaggagatggatttgatactgtaattaaagccaaagccgctgttgattcaaactcacgttgtaaaaataaagtctcttgtgctgacattctcgctttagccaccagagatgtcattcagctgtctgggggaccatggtacccagtggaattaggaaggcttgatgggttcacatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54604" stop="53228"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54304" g_stop="54056" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="249" r_length="249" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53686" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="450" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53581" g_stop="53528" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="504" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E204024" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204024" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54304" e_stop="54056"/>
          <exon e_start="53886" e_stop="53686"/>
          <exon e_start="53581" e_stop="53528"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTTTATAGCCAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCA</genome_strand>
        <mrna_strand>TAATTTTATAGCCAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAG.........................................................................................................................................................................GGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTG........................................................................................................TCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E208716" ref_strand="+" ref_description="SGN-E208716 [cLEC-39-L10]">
      <seq>gaaattaaatgggtcgtctaaatcttcttatgtcagtattattatcaattttatcagttagtattgtgttgatgcctaacttggcatctgcacaattaaagaccaattattacgccaatatttgtcctaatgttgaatccattgttagaaatgttgttaaccagaaattcaaacaaacttttgtcactgtccctgctgttctccgtctcttcttccatgattgctttgttgagggatgtgatgcttcagtgattgtatcatcaacaccagggaacacagctgagaaggatcattcagataatctatcattggcaggagatggatttgatactgtaattaaagccaaagccgctgttgattcaaactcacgttgtaaaaataaagtctcttgtgctgacattctcgctttagccaccagagatgtcattcagctgtctgggggaccatggtacccagtggaattaggaaggcttgatgggttcacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54588" stop="53229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54288" g_stop="54056" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53686" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="434" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53581" g_stop="53529" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="487" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E208716" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54288" e_stop="54056"/>
          <exon e_start="53886" e_stop="53686"/>
          <exon e_start="53581" e_stop="53529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATC</genome_strand>
        <mrna_strand>GAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAG.........................................................................................................................................................................GGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTG........................................................................................................TCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E305447" ref_strand="+" ref_description="SGN-E305447 [cLEX-15-D11]">
      <seq>ttaaatgggtcgtctaaatcttcttatgtcagtattattatcaattttatcagttagtattgtgttgatgcctaacttggcatctgcacaattaaagaccaattattacgccaatatttgtcctaatgttgaatccattgttagaaatgttgttaaccagaaattcaaacaaacttttgtcactgtccctgctgttctccgtctcttcttccatgattgctttgttgagggatgtgatgcttcagtgattgtatcatcaacaccagggaacacagctgagaaggatcattcagataatctatcattggcaggagatggatttgatactgtaattaaagccaaagccgctgttgattcaaactcacgttgtaaaaataaagtctcttgtgctgacattctcgctttagccaccagagatgtcattcagctgtctgggggaccatggtacccagtggaattaggaaggcttgatgggttcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54584" stop="53231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54284" g_stop="54056" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53686" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="430" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53581" g_stop="53531" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="481" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E305447" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305447" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54284" e_stop="54056"/>
          <exon e_start="53886" e_stop="53686"/>
          <exon e_start="53581" e_stop="53531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACA</genome_strand>
        <mrna_strand>TTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAG.........................................................................................................................................................................GGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTG........................................................................................................TCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E201561" ref_strand="+" ref_description="SGN-E201561 [cLEC-4-N16]">
      <seq>aattttatagccagagaaattaaatgggtcgtctaaatcttcttatgtcagtattattatcaattttatcagttagtattgtgttgatgcctaacttggcatctgcacaattaaagaccaattattacgccaatatttgtcctaatgttgaatccattgttagaaatgttgttaaccagaaattcaaacaaacttttgtcactgtccctgctgttctccgtctcttcttccatgattgctttgttgagggatgtgatgcttcagtgattgtatcatcaacaccagggaacacagctgagaaggatcattcagataatctatcattggcaggagatggatttgatactgtaattaaagccaaagccgctgttgattcaaactcacgttgtaaaaataaagtctcttgtgctgacattctcgctttagccaccagagatgtcattcagctgtctgggggaccatggtacccagtgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54603" stop="53256"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54303" g_stop="54056" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53686" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="449" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53581" g_stop="53556" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="475" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E201561" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201561" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54303" e_stop="54056"/>
          <exon e_start="53886" e_stop="53686"/>
          <exon e_start="53581" e_stop="53556"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTATAGCCAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGGACCATGGTACCCAGTGGA</genome_strand>
        <mrna_strand>AATTTTATAGCCAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAG.........................................................................................................................................................................GGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTG........................................................................................................TCTGGGGGACCATGGTACCCAGTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E201103" ref_strand="+" ref_description="SGN-E201103 [cLEC-10-C8]">
      <seq>ttttatagccagagaaattaaatgggtcgtctaaatcttcttatgtcagtattattatcaattttatcagttagtattgtgttgatgcctaacttggcatctgcacaattaaagaccaattattacgccaatatttgtcctaatgttgaatccattgttagaaatgttgttaaccagaaattcaaacaaacttttgtcactgtccctgctgttctccgtctcttcttccatgattgctttgttgagggatgtgatgcttcagtgattgtatcatcaacaccagggaacacagctgagaaggatcattcagataatctatcattggcaggagatggatttgatactgtaattaaagccaaagccgctgttgattcaaactcacgttgtaaaaataaagtctcttgtgctgacattctcgctttagccaccagagatgtcattcagctgtctgggggaccatggtaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54601" stop="53262"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54301" g_stop="54056" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53686" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="447" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53581" g_stop="53562" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="467" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E201103" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54301" e_stop="54056"/>
          <exon e_start="53886" e_stop="53686"/>
          <exon e_start="53581" e_stop="53562"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATAGCCAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGGACCATGGTACCC</genome_strand>
        <mrna_strand>TTTTATAGCCAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAG.........................................................................................................................................................................GGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTG........................................................................................................TCTGGGGGACCATGGTACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E208818" ref_strand="+" ref_description="SGN-E208818 [cLEC-51-L22]">
      <seq>tgatgccttacttggcatctgcacaattaaagaccaattattacgccaatatttgtcctaatgttgaatccattgttagaaatgttgttaaccagaaattcaaacaaacttttgtcactgtccctgctgttctccgtctcttcttccatgattgctttgttgagggatgtgatgcttcagtgattgtatcatcaacaccagggaacacagctgagaaggatcattcatataatctatcattggcaggagatggatttgatactgtaattaaagccaaagccgctgttgattcaaactcacgttgtaaaaattaagactcttgtgctgacattcttgctttagccaccatagatgtcattcaactgtctgggggaccatggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54519" stop="53381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54219" g_stop="54056" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53686" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="365" r_length="201" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53581" g_stop="53565" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="382" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E208818" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54219" e_stop="54056"/>
          <exon e_start="53886" e_stop="53686"/>
          <exon e_start="53581" e_stop="53565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGGACCATGGTA</genome_strand>
        <mrna_strand>TGATGCCTTACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAG.........................................................................................................................................................................GGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCATATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATTAAGACTCTTGTGCTGACATTCTTGCTTTAGCCACCATAGATGTCATTCAACTG........................................................................................................TCTGGGGGACCATGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E209177" ref_strand="+" ref_description="SGN-E209177 [cLEC-38-N15]">
      <seq>ttttatagccagagaaattaaatgggtcgtctaaatcttcttatgtcagtattattatcaattttatcagttagtattgtgttgatgcctaacttggcatctgcacaattaaagaccaattattacgccaatatttgtcctaatgttgaatccattgttagaaatgttgttaaccagaaattcaaacaaacttttgtcactgtccctgctgttctccgtctcttcttccatgattgctttgttgagggatgtgatgcttcagtgattgtatcatcaacaccagggaacacagctgagaaggatcattcagataatctatcattggcaggagatggatttgatactgtaattaaagccaaagccgctgttgattcaaactcacgttgtaaaaataaagtctcttgtgctgacattctcgctttagccaccagagatgtcattcagctgtctggggggaccatggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54601" stop="53381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54301" g_stop="54056" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53686" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="447" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53581" g_stop="53566" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="464" r_length="17" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E209177" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209177" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54301" e_stop="54056"/>
          <exon e_start="53886" e_stop="53686"/>
          <exon e_start="53581" e_stop="53566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATAGCCAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCT-GGGGGACCATGGT</genome_strand>
        <mrna_strand>TTTTATAGCCAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAG.........................................................................................................................................................................GGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTG........................................................................................................TCTGGGGGGACCATGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E213601" ref_strand="+" ref_description="SGN-E213601 [cLEC-76-G15]">
      <seq>aattttatagccagagaaattaaatgggtcgtctaaatcttcttatgtcagtattattatcaattttatcagttagtattgtgttgatgcctaacttggcatctgcacaattaaagaccaattattacgccaatatttgtcctaatgttgaatccattgttagaaatgttgttaaccagaaattcaaacaaacttttgtcactgtccctgctgttctccgtctcttcttccatgattgctttgttgagggatgtgatgcttcagtgattgtatcatcaacaccagggaacacagctgagaaggatcattcagataatctatcattggcaggagatggatttgatactgtaattaaagccaaagccgctgttgattcaaactcacgttgtaaaaataaagtctcttgtgctgacattctcgctttagccaccagagatgtcattcagctgtctggggggacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54603" stop="53381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54303" g_stop="54056" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53686" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="449" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53581" g_stop="53568" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="463" r_length="14" r_score="0.857"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E213601" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213601" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54303" e_stop="54056"/>
          <exon e_start="53886" e_stop="53686"/>
          <exon e_start="53581" e_stop="53568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTATAGCCAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGGACCATG</genome_strand>
        <mrna_strand>AATTTTATAGCCAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAG.........................................................................................................................................................................GGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTG........................................................................................................TCTGGGGGGACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E202518" ref_strand="+" ref_description="SGN-E202518 [cLEC-6-J7]">
      <seq>agaaatgttgttcaccagaaattcaaacaaacttctgtcactgtccctgctgttctccgtctcttcttccatgattgctttgctgagggatgtgatgcttcagtgattggatcatcaacaccatggaacacagctgagaaggatcattcagatcatctatcattggcaggagatggattggatactgcaattaaagccaaagccgctgttgattcaaactcacgttgtgaaaatacactctcttgagctgacattctcgctttagccaccagagatgtcattcatctgtctgggggaccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54442" stop="53381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54142" g_stop="54056" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53686" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="288" r_length="201" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53581" g_stop="53569" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="301" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E202518" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>301</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54142" e_stop="54056"/>
          <exon e_start="53886" e_stop="53686"/>
          <exon e_start="53581" e_stop="53569"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGGACCAT</genome_strand>
        <mrna_strand>AGAAATGTTGTTCACCAGAAATTCAAACAAACTTCTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGCTGAG.........................................................................................................................................................................GGATGTGATGCTTCAGTGATTGGATCATCAACACCATGGAACACAGCTGAGAAGGATCATTCAGATCATCTATCATTGGCAGGAGATGGATTGGATACTGCAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTGAAAATACACTCTCTTGAGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCATCTG........................................................................................................TCTGGGGGACCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E205082" ref_strand="+" ref_description="SGN-E205082 [cLEC-16-A5]">
      <seq>agtattattatcaattttatcagttagtattgtgttgatgcctaacttggcatttgctcaattaaagaccaattattacgcccatatttgtcctaatgttgaatccattgttagaaatgttgttaaccagaaattcaaacaaacttttgtcactgtccctgctgttgtccgcctgttcttccatgattgctttgttgagggatgtgatgcttcagtgattgaatcatcaacaccagggaacacagctgagaaggatcattcagataatctatcattggcaggagatggatttgatactgtaattaaagccaaagccgctgttgattcaaactcacgttgtaaaaataaagtctcttgtgctgacattctcgctttatccaccagagatgtcattcagctgtctggggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54554" stop="53381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54254" g_stop="54056" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53686" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="400" r_length="201" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53581" g_stop="53573" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="409" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E205082" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205082" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54254" e_stop="54056"/>
          <exon e_start="53886" e_stop="53686"/>
          <exon e_start="53581" e_stop="53573"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGGA</genome_strand>
        <mrna_strand>AGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATTTGCTCAATTAAAGACCAATTATTACGCCCATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTGTCCGCCTGTTCTTCCATGATTGCTTTGTTGAG.........................................................................................................................................................................GGATGTGATGCTTCAGTGATTGAATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTATCCACCAGAGATGTCATTCAGCTG........................................................................................................TCTGGGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E212049" ref_strand="+" ref_description="SGN-E212049 [cLEC-66-N18]">
      <seq>atagccagagaaattaaatgggtcgtctaaatcttcttatgtcagtattattatcaattttatcagttagtattgtgttgatgcctaacttggcatctgcacaattaaagaccaattattacgccaatatttgtcctaatgttgaatccattgttagaaatgttgttaaccagaaattcaaacaaacttttgtcactgtccctgctgttctccgtctcttcttccatgattgctttgttgagggatgtgatgcttcagtgattgtatcatcaacaccagggaacacagctgagaaggatcattcagataatctatcattggcaggagatggatttgatactgtaattaaagccaaagccgctgttgattcaaactcacgttgtaaaaataaagtctcttgtgctgacattctcgctttagccaccagagatgtcattcagctgtctggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54597" stop="53381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54297" g_stop="54056" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53686" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="443" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53581" g_stop="53574" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="451" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E212049" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212049" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54297" e_stop="54056"/>
          <exon e_start="53886" e_stop="53686"/>
          <exon e_start="53581" e_stop="53574"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGCCAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGGGG</genome_strand>
        <mrna_strand>ATAGCCAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAG.........................................................................................................................................................................GGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTG........................................................................................................TCTGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E571151" ref_strand="+" ref_description="SGN-E571151 [11045]">
      <seq>cgaggattttatagccagagaaattaaatgggtcgtctaaatcttcttatgtcagtattattatcaattttttcagttagtattgtgttgatgcctaacttggcgtctgcacaattgaagacgaattattacgcaaatatttgtcctaatgttgaatccattgttcagaaatgttgttaaccagaaattcaaacaaacttttgtcactgtccctggctgttctccgtctcttcttccatgattgctttgttgagggatgtgatgcttcagtgattgtatcatcaacaccaggggaacacagctgcaaaggatcattcagataatctatcattggcagcgagatggatttgatactgtgattcaaagccaaagccgctgttgattcaacattcgcgttgtacaacataaagtctcttggtgccgagcattcctcgctttagctaccagagacgtcattcagctgtctggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54602" stop="53381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54307" g_stop="54056" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53686" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="463" r_length="209" r_score="0.876"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104">
            <donor d_prob="0.998" d_score="0.81"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53581" g_stop="53576" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="469" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E571151" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E571151" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54307" e_stop="54056"/>
          <exon e_start="53886" e_stop="53686"/>
          <exon e_start="53581" e_stop="53576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTAATTTTATAGCCAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTT-AGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCT-GCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCA-GGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAG-GAGATGGATTTGATACTGTAATT-AAAGCCAAAGCCGCTGTTGATTCAA-ACTCACGTTGTA-AAAATAAAGTCTCTT-GTGCTGA-CATT-CTCGCTTTAGCCACCAGAGATGTCATTCAGCTGGTTAGTATAAATAATTTATTTACATTCTTAGGTGACATGATCAAGTTAATGTTGTCACTATCACTATATATAGAAATTAAACTCATCTTGTAACATGCGTGTAGTCTGGG</genome_strand>
        <mrna_strand>CGAGGATTTTATAGCCAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTTTCAGTTAGTATTGTGTTGATGCCTAACTTGGCGTCTGCACAATTGAAGACGAATTATTACGCAAATATTTGTCCTAATGTTGAATCCATTGTTCAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAG.........................................................................................................................................................................GGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGGAACACAGCTGCAAAGGATCATTCAGATAATCTATCATTGGCAGCGAGATGGATTTGATACTGTGATTCAAAGCCAAAGCCGCTGTTGATTCAACATTCGCGTTGTACAACATAAAGTCTCTTGGTGCCGAGCATTCCTCGCTTTAGCTACCAGAGACGTCATTCAGCTG........................................................................................................TCTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E203955" ref_strand="+" ref_description="SGN-E203955 [cLEC-22-O9]">
      <seq>ttaaatgggtcgtctaaattttcgtatgtcagtattattatcagggttatcagatagtattgggttgatgcctaacttggcatctgcacaattaaagaccaattattacgccaatatttgtcctaatgttgaatccattgttagaaatgttgttaaccagaaattcaaacaaacttttgtcactgtccctgctgttctccgtctcttcttccatgattgctttgttgagggatgtgatgcttcagtgattgtatcatcaacaccagggaacacagctgagaaggatcattcanataatctatcattggcaggagatggatttgatactgtaattaaagccaaagccgctgttgattcaaactcacgttgtaaaaataaagtctcttgtgctgacattctcgcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54584" stop="53411"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54284" g_stop="54056" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53711" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="405" r_length="176" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E203955" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203955" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54284" e_stop="54056"/>
          <exon e_start="53886" e_stop="53711"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTT</genome_strand>
        <mrna_strand>TTAAATGGGTCGTCTAAATTTTCGTATGTCAGTATTATTATCAGGGTTATCAGATAGTATTGGGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAG.........................................................................................................................................................................GGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCANATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E210627" ref_strand="+" ref_description="SGN-E210627 [cLEC-68-E10]">
      <seq>tctaaatcttcttatgtcagtattattatcaattttatcagttagtattgtgttgatgcctaacttggcatctgcacaattaaagaccaattattacgccaatatttgtcctaatgttgaatccattgttagaaatgttgttaaccagaaattcaaacaaacttttgtcactgtccctgatgttctgcgtctcttcttccatgattgctttgttgagggatgtgatgcttcagtgattgtatcatctacaccatggaacacagctgagaaggatcattcagataatctatcattggcaggagatggatttgatactgtaattaaagccaaagccgctgatgattcgaactcacgttgtaaaaataaagtctcttgtgctgacattctcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54572" stop="53414"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54272" g_stop="54056" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53714" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="390" r_length="173" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E210627" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210627" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54272" e_stop="54056"/>
          <exon e_start="53886" e_stop="53714"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGC</genome_strand>
        <mrna_strand>TCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGATGTTCTGCGTCTCTTCTTCCATGATTGCTTTGTTGAG.........................................................................................................................................................................GGATGTGATGCTTCAGTGATTGTATCATCTACACCATGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGATGATTCGAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E213957" ref_strand="+" ref_description="SGN-E213957 [cLEC-80-C10]">
      <seq>ttttatagccagagaaattaaatgggtcgtctaaatcttcttatgtcagtattattatcaattttatcagttagtattgtgttgatgcctaacttggcatctgcacaattaaagaccaattattacgccaatatttgtcctaatgttgaatccattgttagaaatgttgttaaccagaaattcaaacaaacttttgtcactgtccctgctggtctccgtctcttcttccatgattgctttgttgaaggatgtgatgcttcagtgattgtatcatcaacaccagggaacacagctgagaaagatcattcagataatctatcattggcaggagatggatttgatactggaattaaagcccaagccgctggtgattcaaactcacgttgtaaaaataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54601" stop="53438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54301" g_stop="54056" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53738" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="395" r_length="149" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E213957" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213957" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54301" e_stop="54056"/>
          <exon e_start="53886" e_stop="53738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATAGCCAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAA</genome_strand>
        <mrna_strand>TTTTATAGCCAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGGTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAA.........................................................................................................................................................................GGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAAGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGGAATTAAAGCCCAAGCCGCTGGTGATTCAAACTCACGTTGTAAAAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E205215" ref_strand="+" ref_description="SGN-E205215 [cLEC-16-J4]">
      <seq>ttatagccagagaaattaaatgggtcgtctaaatcttcttatgtcagtattattatcaattttatcagttagtattgtgttgatgcctaacttggcatctgcacaattaaagaccaattattacgccaatatttgtcctaatgttgaatccattgttagaaatgttgttaaccagaaattcaaacaaacttttgtcactgtccctgctgttctccgtctcttcttccatgattgctttgttgagggatgtgatgcttcagtgattgtatcatcaacaccagggaacacagctgagaaggatcattcagataatctatcattggcaggagatggatttgatactgtaattaaagccaaagccgctgttgattcaaactcacgttgtaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54599" stop="53440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54299" g_stop="54056" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53740" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="391" r_length="147" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E205215" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54299" e_stop="54056"/>
          <exon e_start="53886" e_stop="53740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATAGCCAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAAT</genome_strand>
        <mrna_strand>TTATAGCCAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAG.........................................................................................................................................................................GGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E201979" ref_strand="+" ref_description="SGN-E201979 [cLEC-7-I2]">
      <seq>gatgcctaacttggcatctgcacaattaaagaccaattattacgccaatatttgtcctaatgttgaatccattgttagaaatgttgttaaccagaaattcaaacaaacttttgtcactgtccctgctgttctccgtctcttcttccatgattgctttgttgagggatgtgatgcttcagtgattgtatcatcaacaccagggaacacagctgagaaggatcattcagataatctatcattggcaggagatggatttgatactgtaattaaagccaaagccgctgttgattcaaactcacgttgtaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54518" stop="53442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54218" g_stop="54056" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53742" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="308" r_length="145" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E201979" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>308</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201979" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54218" e_stop="54056"/>
          <exon e_start="53886" e_stop="53742"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAA</genome_strand>
        <mrna_strand>GATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAG.........................................................................................................................................................................GGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E204475" ref_strand="+" ref_description="SGN-E204475 [cLEC-24-I1]">
      <seq>attttatagccagagaaattaaatgggtcgtctaaatcttcttatgtcagtattattatcaattttatcagttagtattgtgttgatgcctaacttggcatctgcacaattaaagaccaattattacgccaatatttgtcctaatgttgaatccattgttagaaatgttgttaaccagaaattcaaacaaacttttgtcactgtccctgctgttctccgtctcttcttccatgattgctttgttgagggatgtgatgcttcagtgattgtatcatcaacaccagggaacacagctgagaaggatcattcagataatctatcattggcaggagatggatttgatactgtaattaaagccaaagccgctgttgattcaaactcacgttgtaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54602" stop="53443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54302" g_stop="54056" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53743" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="391" r_length="144" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E204475" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204475" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54302" e_stop="54056"/>
          <exon e_start="53886" e_stop="53743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTATAGCCAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAA</genome_strand>
        <mrna_strand>ATTTTATAGCCAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAG.........................................................................................................................................................................GGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E201080" ref_strand="+" ref_description="SGN-E201080 [cLEC-10-I19]">
      <seq>ttaattttatagccagagaaattaaatgggtcgtctaaatcttcttatgtcagtattattatcaattttatcagttagtattgtgttgatgcctaacttggcatctgcacaattaaagaccaattattacgccaatatttgtcctaatgttgaatccattgttagaaatgttgttaaccagaaattcaaacaaacttttgtcactgtccctgctgttctccgtctcttcttccatgattgctttgttgagggatgtgatgcttcagtgattgtatcatcaacaccagggaacacagctgagaaggatcattcagataatctatcattggcaggagatggatttgatactgtaattaaagccaaagccgctgttgattcaaactcacgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54605" stop="53448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54305" g_stop="54056" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53748" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="389" r_length="139" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E201080" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201080" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54305" e_stop="54056"/>
          <exon e_start="53886" e_stop="53748"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATTTTATAGCCAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTT</genome_strand>
        <mrna_strand>TTAATTTTATAGCCAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAG.........................................................................................................................................................................GGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E201148" ref_strand="+" ref_description="SGN-E201148 [cLEC-10-D9]">
      <seq>ttttatagccagagaaattaaatgggtcgtctaaatcttcttatgtcagtattattatcaattttatcagttagtattgtgttgatgcctaacttggcatctgcacaattaaagaccaattattacgccaatatttgtcctaatgttgaatccattgttagaaatgttgttaaccagaaattcaaacaaacttttgtcactgtccctgctgttctccgtctcttcttccatgattgctttgttgagggatgtgatgcttcagtgattgtatcatcaacaccagggaacacagctgagaaggatcattcagataatctatcattggcaggagatggatttgatactgtaattaaagccaaagccgctgttgattncaaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54601" stop="53453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54301" g_stop="54056" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53753" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="381" r_length="135" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E201148" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54301" e_stop="54056"/>
          <exon e_start="53886" e_stop="53753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATAGCCAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATT-CAAACTC</genome_strand>
        <mrna_strand>TTTTATAGCCAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAG.........................................................................................................................................................................GGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTNCAAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E203545" ref_strand="+" ref_description="SGN-E203545 [cLEC-15-H21]">
      <seq>aattttatagccagagaaattaaatgggtcgtctaaatcttcttatgtcagtattattatcaattttatcagttagtattgtgttgatgcctaacttggcatctgcacaattaaagaccaattattacgccaatatttgtcctaatgttgaatccattgttagaaatgttgttaaccagaaattcaaacaaacttttgtcactgtccctgctgttctccgtctcttcttccatgattgctttgttgagggatgtgatgcttcagtgattgtatcatcaacaccagggaacacagctgagaaggatcattcagataatctatcattggcaggagatggatttgatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54603" stop="53488"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54303" g_stop="54056" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53788" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="347" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E203545" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>347</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54303" e_stop="54056"/>
          <exon e_start="53886" e_stop="53788"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTATAGCCAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACT</genome_strand>
        <mrna_strand>AATTTTATAGCCAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAG.........................................................................................................................................................................GGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E289798" ref_strand="+" ref_description="SGN-E289798 [cLET-9-O12]">
      <seq>tcgtctaaatcttcttatgtcagtattattatcaattttatcagttagtattgtgttgatgcctaacttggcatctgcacaattaaagaccaattattacgccaatatttgtcctaatgttgaatccattgttagaaatgttgttaaccagaaattcaaacaaacttttgtcactgtccctgctgttctccgtctcttcttccatgattgctttgttgagggatgtgatgcttcagtgattgtatcatcaacaccagggaacacagctgagaaggatcattcacataatctatcattggcaggagatggatttgatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54575" stop="53489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54275" g_stop="54056" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53886" g_stop="53789" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="318" r_length="98" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E289798" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>318</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54275" e_stop="54056"/>
          <exon e_start="53886" e_stop="53789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGTACGTTTATTAACTACTCTGTTCCATTAATTTCTAATCATGATACTGTTGAGAGTCTTACACGCGATACGTGTGAATTTGAGTTTCGTTCTACAATATTAATCCCTTTCCCCCAATGGTTCAAGCATTTAGAAAAGAGACTTACGTTTATTTTTGTAATTGGAACTAGGGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATAC</genome_strand>
        <mrna_strand>TCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAG.........................................................................................................................................................................GGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCACATAATCTATCATTGGCAGGAGATGGATTTGATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E200928" ref_strand="+" ref_description="SGN-E200928 [cLEC-5-F18]">
      <seq>gaaattaaatgggtcgtctaaatcttcttatgtcagtattattatcaattttatcagttagtattgtgttgatgcctaacttggcatctgcacaattaaagaccaattattacgccaatatttgtcctaatgttgaatccattgttagaaatgttgtaaccagaaattcaaacaaacttttgtcactgccctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54588" stop="53792"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54288" g_stop="54092" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E200928" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>197</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200928" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54288" e_stop="54092"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCT</genome_strand>
        <mrna_strand>GAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTG-TAACCAGAAATTCAAACAAACTTTTGTCACTG-CCCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E300011" ref_strand="+" ref_description="SGN-E300011 [cLEW-11-J19]">
      <seq>gccagagaaattaaatgggtcgtctaaatcttcttatgtcagtattattatcaattttatcagttagtattgtgttgatgcctaacttggcatctgcacaattaaagaccaattattacgccaatatttgtcctaatgttgaatccattgttagaaatgttgttaaccagaaattcaaacaaacttttgtcactgtccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54594" stop="53795"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54294" g_stop="54095" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E300011" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>200</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54294" e_stop="54095"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCT</genome_strand>
        <mrna_strand>GCCAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E214993" ref_strand="+" ref_description="SGN-E214993 [cLEC-78-A1]">
      <seq>aattttatagccagagaaattaaatgggtcgtctaaatcttcttatgtcagtattattatcaattttatcagttagtattgtgttgatgcctaacttggcatctgcacaattaaagaccaattattacgccaatatttgntcctaatggttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="54603" stop="53853"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54303" g_stop="54157" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E214993" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>147</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214993" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54303" e_stop="54157"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTATAGCCAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTG-TCCTAATG</genome_strand>
        <mrna_strand>AATTTTATAGCCAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGNTCCTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E546423" ref_strand="+" ref_description="SGN-E546423 [TUS-69-M12]">
      <seq>aaagtaaaaaaaaatatgttatcgtgattagaaaatgtttaaatattatgtgcactgctggacttgtctgggggcatctctttcacaaaactcaaaccacattggctaaggggactggatttgtttggcatgcttcctccctagtcccccccctacatacctatttcaccttctttttttttctatcaaaactccaaaaatactacaacatttgctttgatttctgtgtgataaatgagaatcttaaattcttccttatcagtcctaataatgatattttattctttcctcttttaacttttatacatatatatatatatctttgggggtgctcactttggcagtatatactagaggcaaaattaaaagtgggatgttaataaactctctcaaacaaagaaaaagcctaaaagtctccaagttttggtttttaaactcctcaaagttcttcatttcgatcaataaagtacgacgttacaggtactaatatacattcccaattccggagatatatcgagtcaaatcgaagaaacatcgttctcttcctcttctttctgtctatttttatttttaaaatggagaagcttatcaatccttacgataaggaatacatgaagatggcaatgttaaagcatgaagagatcttcaaagaacaggtgtacgaactgcatcgtctatatcaaacacagaaattgctgatgaggaacatgtncagtagtactaataatcggcctcaacaagtcatgaaagatcatcatcaagtagtggtaaaccatttagattcaaacaaaagataactgctcgtcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="68223" stop="70491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68517" g_stop="69000" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="480" r_length="480" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69001" i_stop="69790" i_length="790">
            <donor d_prob="0.994" d_score="0.81"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69791" g_stop="69965" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="656" r_length="176" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69966" i_stop="70047" i_length="82">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70048" g_stop="70132" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="657" r_stop="741" r_length="85" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E546423" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E546423" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68517" e_stop="69000"/>
          <exon e_start="69791" e_stop="69965"/>
          <exon e_start="70048" e_stop="70132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTA-AAAAAATATGTTATCGTGATTAGAAAATGTTTAAATATTATGTGCACTGCTGGACTTGTCTGGGGGCATCTCTTTCACAAAACTCAAACCACATTGGCTAAGGGGACTGGATTTGTTTGGCATGCTTCCTCCCTAGT-CCCCCCCTACATACCTATTTCACCCTCTTTTTTTTCCTATC-AAACTCCAAAAATACAACAACATTTGCTTTGATTTCCGTGTGCTAAATGAGAATCTTAAATTCTTCCTTATCAGTCCTAATAATGATATTTTATTCTTTCCTCTTTTAATTTTATATATATAATATATATATATATATATATCTTTGGGGGTGCTCACTTTGGCAGTATATACTAGAGGCAAAATTAAAAGTGGGATGTTAATAAACTCTCTCAAACAAAGAAAAAGCCTAAAAGTCTCCAAGTTTTGGTTTTTAAACTCCTCAAAGTTCTTCTATTCGATCAATAAAGT---ACGTTGCAGGTAAGGACGCTGAATTCAATCATAAAAAAATATGTATTTTTTCTTGCTCTTTCTTTCTTTCTTTGGTACTCTATAATTTAAGTTCATTTTTATAATTTACATGAACATTATTGTTGCATGCTTAGCGTCGATCAACGACAAAAATAATCAAAAATATCCATCTGATCATCAATTAATAGCTAGCAAATTTCTTTGATACACGGAATGGAATTATATGTTTTCTAATTACCTATCTAATGAAAACTAAAAATATCGAAAACGTATTAACAAAAAAAAAGAAGTGAGAAAAGCATGTGGCATGCCGTAAACTGGTAACAGAGAATAGTTTAATTTGTCGAAAAATATCTGTATTTTTTTTAGGATATATGAATTAACTTGATTTTACAAGAATATTACTACTGTTGTTATGATGGTGATATATATATATATATGTTGATCATGTCTTGCTTTATAATAGGACATATATAGATGATTTATGTATATAATGCTGTTGTTATTATTATTGGTGTGGCCCAAATTGACAGTAATTTGTATGGAAAAGAACGAACAATAAAAACAAACAAAATCACACATGCCAAAATAGGGGTACTGCGTTAATCTCCTTCAGTCATAAAAAAGTTGTGCAATAAATTGGGAAGCTTGATATTTTCTTAGATCATAGCCTTTAACGTCTATCAACTTCTTTTCTATTATTATTATTATTATTACAACAATTAAATAGCTACTATTTCTTTATTCATTTTTCAATTTTTTTTTAAAAAAAAACTTACTTGATTTCTGCTTCTTTTAGGTACTAATATACATTCCCAATTCCGGAGATACATTGAGTCAAATCGAAGAAACATCGTTCTCTTCCTCTTCTTTCTGTCT-TTTTTATTTTAAAAATGGAGAAGCTTATCAATCCTTACGATAAGGAATACATGAAGATGGCGATGTTAAAGCATGAAGAGATCTTCAGAGAACAGGTAAATTTATATTATGTTTCGTTCTGAATCAACTGACTCTAGATTTTATTTATTAATTGCTTAACGACATGTGTTTTGTCAGGTGTACGAACTGCATCGTCTATATCAAACACAGAAATTGCTGATGAGAAACATGTCAAGTAGTACTAATAATCGGCCTCAACAAG</genome_strand>
        <mrna_strand>AAAGTAAAAAAAAATATGTTATCGTGATTAGAAAATGTTTAAATATTATGTGCACTGCTGGACTTGTCTGGGGGCATCTCTTTCACAAAACTCAAACCACATTGGCTAAGGGGACTGGATTTGTTTGGCATGCTTCCTCCCTAGTCCCCCCCCTACATACCTATTTCACCTTCTTTTTTTTTCTATCAAAACTCCAAAAATACTACAACATTTGCTTTGATTTCTGTGTGATAAATGAGAATCTTAAATTCTTCCTTATCAGTCCTAATAATGATATTTTATTCTTTCCTCTTTT-A----A-CT-T-T--TATACATATATATATATATCTTTGGGGGTGCTCACTTTGGCAGTATATACTAGAGGCAAAATTAAAAGTGGGATGTTAATAAACTCTCTCAAACAAAGAAAAAGCCTAAAAGTCTCCAAGTTTTGGTTTTTAAACTCCTCAAAGTTCTTCATTTCGATCAATAAAGTACGACGTTACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTAATATACATTCCCAATTCCGGAGATATATCGAGTCAAATCGAAGAAACATCGTTCTCTTCCTCTTCTTTCTGTCTATTTTTATTTTTAAAATGGAGAAGCTTATCAATCCTTACGATAAGGAATACATGAAGATGGCAATGTTAAAGCATGAAGAGATCTTCAAAGAACAG..................................................................................GTGTACGAACTGCATCGTCTATATCAAACACAGAAATTGCTGATGAGGAACATGTNCAGTAGTACTAATAATCGGCCTCAACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E358842" ref_strand="+" ref_description="SGN-E358842 [cLHT-24-J2]">
      <seq>aagtaaaaaaaaatatgttatcgtgattagaaaatgtttaaatattatgtgcactgctggacttgtctgggggcatctctttcacaaaactcaaaccacattggctaaggggactggatttgtttggcatgcttcctccctagtcccccccctacatacctatttcaccttctttttttttctatcaaaactccaaaaatactacaacatttgctttgatttctgtgtgataaatgagaatcttaaattcttccttatcagtcctaataatgatattttattctttcctcttttaacttttatacatatatatatatatctttgggggtgctcactttggcagtatatactagaggcaaaattaaaagtgggatgttaataaactctctcaaacaaagaaaaagcctaaaagtctccaagttttggtttttaaactcctcaaagttcttcatttcgatcaataaagtacgacgttacaggtactaatatacattcccaattccggagatatatcgagtcaaatcgaagaaacatcgntctcttcctcttctttctggctatttttatttttaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="68223" stop="70186"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68518" g_stop="69000" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="479" r_length="479" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69001" i_stop="69790" i_length="790">
            <donor d_prob="0.994" d_score="0.81"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69791" g_stop="69886" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="576" r_length="97" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E358842" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68518" e_stop="69000"/>
          <exon e_start="69791" e_stop="69886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTAA-AAAAATATGTTATCGTGATTAGAAAATGTTTAAATATTATGTGCACTGCTGGACTTGTCTGGGGGCATCTCTTTCACAAAACTCAAACCACATTGGCTAAGGGGACTGGATTTGTTTGGCATGCTTCCTCCCTAGT-CCCCCCCTACATACCTATTTCACCCTCTTTTTTTTCCTATC-AAACTCCAAAAATACAACAACATTTGCTTTGATTTCCGTGTGCTAAATGAGAATCTTAAATTCTTCCTTATCAGTCCTAATAATGATATTTTATTCTTTCCTCTTTTAATTTTATATATATAATATATATATATATATATATCTTTGGGGGTGCTCACTTTGGCAGTATATACTAGAGGCAAAATTAAAAGTGGGATGTTAATAAACTCTCTCAAACAAAGAAAAAGCCTAAAAGTCTCCAAGTTTTGGTTTTTAAACTCCTCAAAGTTCTTCTATTCGATCAATAAAGT---ACGTTGCAGGTAAGGACGCTGAATTCAATCATAAAAAAATATGTATTTTTTCTTGCTCTTTCTTTCTTTCTTTGGTACTCTATAATTTAAGTTCATTTTTATAATTTACATGAACATTATTGTTGCATGCTTAGCGTCGATCAACGACAAAAATAATCAAAAATATCCATCTGATCATCAATTAATAGCTAGCAAATTTCTTTGATACACGGAATGGAATTATATGTTTTCTAATTACCTATCTAATGAAAACTAAAAATATCGAAAACGTATTAACAAAAAAAAAGAAGTGAGAAAAGCATGTGGCATGCCGTAAACTGGTAACAGAGAATAGTTTAATTTGTCGAAAAATATCTGTATTTTTTTTAGGATATATGAATTAACTTGATTTTACAAGAATATTACTACTGTTGTTATGATGGTGATATATATATATATATGTTGATCATGTCTTGCTTTATAATAGGACATATATAGATGATTTATGTATATAATGCTGTTGTTATTATTATTGGTGTGGCCCAAATTGACAGTAATTTGTATGGAAAAGAACGAACAATAAAAACAAACAAAATCACACATGCCAAAATAGGGGTACTGCGTTAATCTCCTTCAGTCATAAAAAAGTTGTGCAATAAATTGGGAAGCTTGATATTTTCTTAGATCATAGCCTTTAACGTCTATCAACTTCTTTTCTATTATTATTATTATTATTACAACAATTAAATAGCTACTATTTCTTTATTCATTTTTCAATTTTTTTTTAAAAAAAAACTTACTTGATTTCTGCTTCTTTTAGGTACTAATATACATTCCCAATTCCGGAGATACATTGAGTCAAATCGAAGAAACATCGTTCTCTTCCTCTTCTTTCTGTCT-TTTTTATTTTAAAAAT</genome_strand>
        <mrna_strand>AAGTAAAAAAAAATATGTTATCGTGATTAGAAAATGTTTAAATATTATGTGCACTGCTGGACTTGTCTGGGGGCATCTCTTTCACAAAACTCAAACCACATTGGCTAAGGGGACTGGATTTGTTTGGCATGCTTCCTCCCTAGTCCCCCCCCTACATACCTATTTCACCTTCTTTTTTTTTCTATCAAAACTCCAAAAATACTACAACATTTGCTTTGATTTCTGTGTGATAAATGAGAATCTTAAATTCTTCCTTATCAGTCCTAATAATGATATTTTATTCTTTCCTCTTTT-A----A-CT-T-T--TATACATATATATATATATCTTTGGGGGTGCTCACTTTGGCAGTATATACTAGAGGCAAAATTAAAAGTGGGATGTTAATAAACTCTCTCAAACAAAGAAAAAGCCTAAAAGTCTCCAAGTTTTGGTTTTTAAACTCCTCAAAGTTCTTCATTTCGATCAATAAAGTACGACGTTACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTAATATACATTCCCAATTCCGGAGATATATCGAGTCAAATCGAAGAAACATCGNTCTCTTCCTCTTCTTTCTGGCTATTTTTATTTTTAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E313683" ref_strand="+" ref_description="SGN-E313683 [cTOA-12-N2]">
      <seq>tggacttgtctgggggcatctctttcacaaaactcaaaccacattggctaaggggactggatttgtttggcatgcttcctccctagtccccccctacatacctatttcaccctcttttttttcctatcaaactccaaaaatacaacaacatttgctttgatttccgtgtgctaaatgagaatcttaaattcttccttatcagtcctaataatgatattttattctttcctcttttaattttatatatataatatatatatatatatatatctttgggggtgctcactttggcagtatatactagaggcaaaattaaaagtgggatgttaataaactctctcaaacaaagaaaaagcctaaaagtctccaagttttggtttttaaactcctcaaagttcttctattcgatcaataaagtactaatatacattcccaattccggagatacattgagtcaaatcgaagaaacatcgttctcttcctcttctttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="68274" stop="70166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68574" g_stop="68989" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68990" i_stop="69790" i_length="801">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69791" g_stop="69866" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="492" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E313683" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68574" e_stop="68989"/>
          <exon e_start="69791" e_stop="69866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACTTGTCTGGGGGCATCTCTTTCACAAAACTCAAACCACATTGGCTAAGGGGACTGGATTTGTTTGGCATGCTTCCTCCCTAGTCCCCCCCTACATACCTATTTCACCCTCTTTTTTTTCCTATCAAACTCCAAAAATACAACAACATTTGCTTTGATTTCCGTGTGCTAAATGAGAATCTTAAATTCTTCCTTATCAGTCCTAATAATGATATTTTATTCTTTCCTCTTTTAATTTTATATATATAATATATATATATATATATATCTTTGGGGGTGCTCACTTTGGCAGTATATACTAGAGGCAAAATTAAAAGTGGGATGTTAATAAACTCTCTCAAACAAAGAAAAAGCCTAAAAGTCTCCAAGTTTTGGTTTTTAAACTCCTCAAAGTTCTTCTATTCGATCAATAAAGTACGTTGCAGGTAAGGACGCTGAATTCAATCATAAAAAAATATGTATTTTTTCTTGCTCTTTCTTTCTTTCTTTGGTACTCTATAATTTAAGTTCATTTTTATAATTTACATGAACATTATTGTTGCATGCTTAGCGTCGATCAACGACAAAAATAATCAAAAATATCCATCTGATCATCAATTAATAGCTAGCAAATTTCTTTGATACACGGAATGGAATTATATGTTTTCTAATTACCTATCTAATGAAAACTAAAAATATCGAAAACGTATTAACAAAAAAAAAGAAGTGAGAAAAGCATGTGGCATGCCGTAAACTGGTAACAGAGAATAGTTTAATTTGTCGAAAAATATCTGTATTTTTTTTAGGATATATGAATTAACTTGATTTTACAAGAATATTACTACTGTTGTTATGATGGTGATATATATATATATATGTTGATCATGTCTTGCTTTATAATAGGACATATATAGATGATTTATGTATATAATGCTGTTGTTATTATTATTGGTGTGGCCCAAATTGACAGTAATTTGTATGGAAAAGAACGAACAATAAAAACAAACAAAATCACACATGCCAAAATAGGGGTACTGCGTTAATCTCCTTCAGTCATAAAAAAGTTGTGCAATAAATTGGGAAGCTTGATATTTTCTTAGATCATAGCCTTTAACGTCTATCAACTTCTTTTCTATTATTATTATTATTATTACAACAATTAAATAGCTACTATTTCTTTATTCATTTTTCAATTTTTTTTTAAAAAAAAACTTACTTGATTTCTGCTTCTTTTAGGTACTAATATACATTCCCAATTCCGGAGATACATTGAGTCAAATCGAAGAAACATCGTTCTCTTCCTCTTCTTTCT</genome_strand>
        <mrna_strand>TGGACTTGTCTGGGGGCATCTCTTTCACAAAACTCAAACCACATTGGCTAAGGGGACTGGATTTGTTTGGCATGCTTCCTCCCTAGTCCCCCCCTACATACCTATTTCACCCTCTTTTTTTTCCTATCAAACTCCAAAAATACAACAACATTTGCTTTGATTTCCGTGTGCTAAATGAGAATCTTAAATTCTTCCTTATCAGTCCTAATAATGATATTTTATTCTTTCCTCTTTTAATTTTATATATATAATATATATATATATATATATCTTTGGGGGTGCTCACTTTGGCAGTATATACTAGAGGCAAAATTAAAAGTGGGATGTTAATAAACTCTCTCAAACAAAGAAAAAGCCTAAAAGTCTCCAAGTTTTGGTTTTTAAACTCCTCAAAGTTCTTCTATTCGATCAATAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTAATATACATTCCCAATTCCGGAGATACATTGAGTCAAATCGAAGAAACATCGTTCTCTTCCTCTTCTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E303542" ref_strand="+" ref_description="SGN-E303542 [cLEX-2-F22]">
      <seq>ttgctttgatttccgtgtgctaaatgagaatcttaaattcttccttatcagtcctaataatgatattttattctttcctcttttaattttatatatataatatatatatatatatatatctttgggggtgctcactttggcagtatatactagaggcaaaattaaaagtgggatgttaataaactctctcaaacaaagaaaaagcctaaaagtctccaagttttggtttttaaactcctcaaagttcttctattcgatcaataaagtacgttgcaggtactaatatacattcccaattccggagatacattgagtcaaatcgaagaaacatcgttctcttcctcttctttctgtcttttttattttaaaaatggagaagcttatcaatccttacgataaggaatacatgaagatggcgatgttaaagcatgaagagatcttcagagaacaggtgtacgaactgcatcgtctatatcaaacacagaaattgctgatgagaaacatgtcaagtagtactaataatcggcctcaacaagatcatcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="68425" stop="70441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68725" g_stop="69000" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="276" r_length="276" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69001" i_stop="69790" i_length="790">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69791" g_stop="69965" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="451" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69966" i_stop="70047" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70048" g_stop="70141" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="545" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E303542" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303542" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68725" e_stop="69000"/>
          <exon e_start="69791" e_stop="69965"/>
          <exon e_start="70048" e_stop="70141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTTTGATTTCCGTGTGCTAAATGAGAATCTTAAATTCTTCCTTATCAGTCCTAATAATGATATTTTATTCTTTCCTCTTTTAATTTTATATATATAATATATATATATATATATATCTTTGGGGGTGCTCACTTTGGCAGTATATACTAGAGGCAAAATTAAAAGTGGGATGTTAATAAACTCTCTCAAACAAAGAAAAAGCCTAAAAGTCTCCAAGTTTTGGTTTTTAAACTCCTCAAAGTTCTTCTATTCGATCAATAAAGTACGTTGCAGGTAAGGACGCTGAATTCAATCATAAAAAAATATGTATTTTTTCTTGCTCTTTCTTTCTTTCTTTGGTACTCTATAATTTAAGTTCATTTTTATAATTTACATGAACATTATTGTTGCATGCTTAGCGTCGATCAACGACAAAAATAATCAAAAATATCCATCTGATCATCAATTAATAGCTAGCAAATTTCTTTGATACACGGAATGGAATTATATGTTTTCTAATTACCTATCTAATGAAAACTAAAAATATCGAAAACGTATTAACAAAAAAAAAGAAGTGAGAAAAGCATGTGGCATGCCGTAAACTGGTAACAGAGAATAGTTTAATTTGTCGAAAAATATCTGTATTTTTTTTAGGATATATGAATTAACTTGATTTTACAAGAATATTACTACTGTTGTTATGATGGTGATATATATATATATATGTTGATCATGTCTTGCTTTATAATAGGACATATATAGATGATTTATGTATATAATGCTGTTGTTATTATTATTGGTGTGGCCCAAATTGACAGTAATTTGTATGGAAAAGAACGAACAATAAAAACAAACAAAATCACACATGCCAAAATAGGGGTACTGCGTTAATCTCCTTCAGTCATAAAAAAGTTGTGCAATAAATTGGGAAGCTTGATATTTTCTTAGATCATAGCCTTTAACGTCTATCAACTTCTTTTCTATTATTATTATTATTATTACAACAATTAAATAGCTACTATTTCTTTATTCATTTTTCAATTTTTTTTTAAAAAAAAACTTACTTGATTTCTGCTTCTTTTAGGTACTAATATACATTCCCAATTCCGGAGATACATTGAGTCAAATCGAAGAAACATCGTTCTCTTCCTCTTCTTTCTGTCTTTTTTATTTTAAAAATGGAGAAGCTTATCAATCCTTACGATAAGGAATACATGAAGATGGCGATGTTAAAGCATGAAGAGATCTTCAGAGAACAGGTAAATTTATATTATGTTTCGTTCTGAATCAACTGACTCTAGATTTTATTTATTAATTGCTTAACGACATGTGTTTTGTCAGGTGTACGAACTGCATCGTCTATATCAAACACAGAAATTGCTGATGAGAAACATGTCAAGTAGTACTAATAATCGGCCTCAACAAGATCATCATC</genome_strand>
        <mrna_strand>TTGCTTTGATTTCCGTGTGCTAAATGAGAATCTTAAATTCTTCCTTATCAGTCCTAATAATGATATTTTATTCTTTCCTCTTTTAATTTTATATATATAATATATATATATATATATATCTTTGGGGGTGCTCACTTTGGCAGTATATACTAGAGGCAAAATTAAAAGTGGGATGTTAATAAACTCTCTCAAACAAAGAAAAAGCCTAAAAGTCTCCAAGTTTTGGTTTTTAAACTCCTCAAAGTTCTTCTATTCGATCAATAAAGTACGTTGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTAATATACATTCCCAATTCCGGAGATACATTGAGTCAAATCGAAGAAACATCGTTCTCTTCCTCTTCTTTCTGTCTTTTTTATTTTAAAAATGGAGAAGCTTATCAATCCTTACGATAAGGAATACATGAAGATGGCGATGTTAAAGCATGAAGAGATCTTCAGAGAACAG..................................................................................GTGTACGAACTGCATCGTCTATATCAAACACAGAAATTGCTGATGAGAAACATGTCAAGTAGTACTAATAATCGGCCTCAACAAGATCATCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E392761" ref_strand="+" ref_description="SGN-E392761 [TUS-36-D24]">
      <seq>caaaattaaaagtgggatgttaataaactctctcaaacaaagaaaaagcctaaaagtctccaagttttggtttttaaactcctcaaagttcttctattcgatcaataaagtacgttgcaggtactaatatacattcccaattccggagatacattgagtcaaatcgaagaaacatcgttctcttcctcttctttctgtcttttttattttaaaaatggagaagcttatcaatccttacgataaggaatacatgaagatggcgatgttaaagcatgaagagatcttcagagaacaggtgtacgaactgcatcgtctatatcaaacacagaaattgctgatgagaaacatgtcaagtagtactaataatcggcctcaacaagatcatcatcaagtagtggtaaaccaattagactcgaacaaaaagataactgctcgtcaatgtattgacttggaaataaggccaaatacagacgaagaacacattgcagaatcaggtggtgaagatgatactcatgaattggaattaacattagggctatcaagttacaacgttcgtcgaaggagaaaaacagctcattttgattcttcttcaccaagtttttcttcatctaattcaacaggatctgcttctagccaaataaagaacactacgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="68581" stop="70706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68881" g_stop="69000" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69001" i_stop="69790" i_length="790">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69791" g_stop="69965" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="295" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69966" i_stop="70047" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70048" g_stop="70406" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="654" r_length="359" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E392761" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68881" e_stop="69000"/>
          <exon e_start="69791" e_stop="69965"/>
          <exon e_start="70048" e_stop="70406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATTAAAAGTGGGATGTTAATAAACTCTCTCAAACAAAGAAAAAGCCTAAAAGTCTCCAAGTTTTGGTTTTTAAACTCCTCAAAGTTCTTCTATTCGATCAATAAAGTACGTTGCAGGTAAGGACGCTGAATTCAATCATAAAAAAATATGTATTTTTTCTTGCTCTTTCTTTCTTTCTTTGGTACTCTATAATTTAAGTTCATTTTTATAATTTACATGAACATTATTGTTGCATGCTTAGCGTCGATCAACGACAAAAATAATCAAAAATATCCATCTGATCATCAATTAATAGCTAGCAAATTTCTTTGATACACGGAATGGAATTATATGTTTTCTAATTACCTATCTAATGAAAACTAAAAATATCGAAAACGTATTAACAAAAAAAAAGAAGTGAGAAAAGCATGTGGCATGCCGTAAACTGGTAACAGAGAATAGTTTAATTTGTCGAAAAATATCTGTATTTTTTTTAGGATATATGAATTAACTTGATTTTACAAGAATATTACTACTGTTGTTATGATGGTGATATATATATATATATGTTGATCATGTCTTGCTTTATAATAGGACATATATAGATGATTTATGTATATAATGCTGTTGTTATTATTATTGGTGTGGCCCAAATTGACAGTAATTTGTATGGAAAAGAACGAACAATAAAAACAAACAAAATCACACATGCCAAAATAGGGGTACTGCGTTAATCTCCTTCAGTCATAAAAAAGTTGTGCAATAAATTGGGAAGCTTGATATTTTCTTAGATCATAGCCTTTAACGTCTATCAACTTCTTTTCTATTATTATTATTATTATTACAACAATTAAATAGCTACTATTTCTTTATTCATTTTTCAATTTTTTTTTAAAAAAAAACTTACTTGATTTCTGCTTCTTTTAGGTACTAATATACATTCCCAATTCCGGAGATACATTGAGTCAAATCGAAGAAACATCGTTCTCTTCCTCTTCTTTCTGTCTTTTTTATTTTAAAAATGGAGAAGCTTATCAATCCTTACGATAAGGAATACATGAAGATGGCGATGTTAAAGCATGAAGAGATCTTCAGAGAACAGGTAAATTTATATTATGTTTCGTTCTGAATCAACTGACTCTAGATTTTATTTATTAATTGCTTAACGACATGTGTTTTGTCAGGTGTACGAACTGCATCGTCTATATCAAACACAGAAATTGCTGATGAGAAACATGTCAAGTAGTACTAATAATCGGCCTCAACAAGATCATCATCAAGTAGTGGTAAACCAATTAGACTCGAACAAAAAGATAACTGCTCGTCAATGTATTGACTTGGAAATAAGGCCAAATACAGACGAAGAACACATTGCAGAATCAGGTGGTGAAGATGATACTCATGAATTGGAATTAACATTAGGGCTATCAAGTTACAACGTTCGTCGAAGGAGAAAAACAGCTCATTTTGATTCTTCTTCACCAAGTTTTTCTTCATCTAATTCAACAGGATCTGCTTCTAGCCAAATAAAGAACACTACGAC</genome_strand>
        <mrna_strand>CAAAATTAAAAGTGGGATGTTAATAAACTCTCTCAAACAAAGAAAAAGCCTAAAAGTCTCCAAGTTTTGGTTTTTAAACTCCTCAAAGTTCTTCTATTCGATCAATAAAGTACGTTGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTAATATACATTCCCAATTCCGGAGATACATTGAGTCAAATCGAAGAAACATCGTTCTCTTCCTCTTCTTTCTGTCTTTTTTATTTTAAAAATGGAGAAGCTTATCAATCCTTACGATAAGGAATACATGAAGATGGCGATGTTAAAGCATGAAGAGATCTTCAGAGAACAG..................................................................................GTGTACGAACTGCATCGTCTATATCAAACACAGAAATTGCTGATGAGAAACATGTCAAGTAGTACTAATAATCGGCCTCAACAAGATCATCATCAAGTAGTGGTAAACCAATTAGACTCGAACAAAAAGATAACTGCTCGTCAATGTATTGACTTGGAAATAAGGCCAAATACAGACGAAGAACACATTGCAGAATCAGGTGGTGAAGATGATACTCATGAATTGGAATTAACATTAGGGCTATCAAGTTACAACGTTCGTCGAAGGAGAAAAACAGCTCATTTTGATTCTTCTTCACCAAGTTTTTCTTCATCTAATTCAACAGGATCTGCTTCTAGCCAAATAAAGAACACTACGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E389817" ref_strand="+" ref_description="SGN-E389817 [TUS-4-G19]">
      <seq>caaatcaaaagtgggatgttaataaactctctcaacaaagaaaaagcctaaaagtctccaagttttggtttttaaactcctcaaagttcttctattcgatcaataaagtacgttgcaggtactaatatacattcccaattccggagatacattgagtcaaatcgaagaaacatcgttctcttcctcttctttctgtcttttttattttaaaaatggagaagcttatcaatccttacgataaggaatacatgaagatggcgatgttaaagcatgaagagatcttcagagaacaggtgtacgaactgcatcgtctatatcaaacacagaaattgctgatgagaaacatgtcaagtagtactaataatcggcctcaacaagatcatcatcaagtagtggtaaaccaattagactcgaacaaaaagataactgctcgtcaatgtattgacttggaaataaggccaaatacagacgaagaacacattgcagaatcaggtggtgaagatgatactcatgaattggaattaacattagggctatcaagttacaacgttcgtcgaaggagaaaaacagctcattttgattcttcttcaccaagtttttcttcatctaaattcacaggatctgcttctagccaaataaagaacactacgacnaatttagtgagaaattcgaggaatattgaaggtagtaaatggggacttgaagaagaattgccagtttcgaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="68583" stop="70780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68882" g_stop="69000" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69001" i_stop="69790" i_length="790">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69791" g_stop="69965" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="293" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69966" i_stop="70047" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70048" g_stop="70480" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="726" r_length="433" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E389817" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68882" e_stop="69000"/>
          <exon e_start="69791" e_stop="69965"/>
          <exon e_start="70048" e_stop="70480"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTAAAAGTGGGATGTTAATAAACTCTCTCAAACAAAGAAAAAGCCTAAAAGTCTCCAAGTTTTGGTTTTTAAACTCCTCAAAGTTCTTCTATTCGATCAATAAAGTACGTTGCAGGTAAGGACGCTGAATTCAATCATAAAAAAATATGTATTTTTTCTTGCTCTTTCTTTCTTTCTTTGGTACTCTATAATTTAAGTTCATTTTTATAATTTACATGAACATTATTGTTGCATGCTTAGCGTCGATCAACGACAAAAATAATCAAAAATATCCATCTGATCATCAATTAATAGCTAGCAAATTTCTTTGATACACGGAATGGAATTATATGTTTTCTAATTACCTATCTAATGAAAACTAAAAATATCGAAAACGTATTAACAAAAAAAAAGAAGTGAGAAAAGCATGTGGCATGCCGTAAACTGGTAACAGAGAATAGTTTAATTTGTCGAAAAATATCTGTATTTTTTTTAGGATATATGAATTAACTTGATTTTACAAGAATATTACTACTGTTGTTATGATGGTGATATATATATATATATGTTGATCATGTCTTGCTTTATAATAGGACATATATAGATGATTTATGTATATAATGCTGTTGTTATTATTATTGGTGTGGCCCAAATTGACAGTAATTTGTATGGAAAAGAACGAACAATAAAAACAAACAAAATCACACATGCCAAAATAGGGGTACTGCGTTAATCTCCTTCAGTCATAAAAAAGTTGTGCAATAAATTGGGAAGCTTGATATTTTCTTAGATCATAGCCTTTAACGTCTATCAACTTCTTTTCTATTATTATTATTATTATTACAACAATTAAATAGCTACTATTTCTTTATTCATTTTTCAATTTTTTTTTAAAAAAAAACTTACTTGATTTCTGCTTCTTTTAGGTACTAATATACATTCCCAATTCCGGAGATACATTGAGTCAAATCGAAGAAACATCGTTCTCTTCCTCTTCTTTCTGTCTTTTTTATTTTAAAAATGGAGAAGCTTATCAATCCTTACGATAAGGAATACATGAAGATGGCGATGTTAAAGCATGAAGAGATCTTCAGAGAACAGGTAAATTTATATTATGTTTCGTTCTGAATCAACTGACTCTAGATTTTATTTATTAATTGCTTAACGACATGTGTTTTGTCAGGTGTACGAACTGCATCGTCTATATCAAACACAGAAATTGCTGATGAGAAACATGTCAAGTAGTACTAATAATCGGCCTCAACAAGATCATCATCAAGTAGTGGTAAACCAATTAGACTCGAACAAAAAGATAACTGCTCGTCAATGTATTGACTTGGAAATAAGGCCAAATACAGACGAAGAACACATTGCAGAATCAGGTGGTGAAGATGATACTCATGAATTGGAATTAACATTAGGGCTATCAAGTTACAACGTTCGTCGAAGGAGAAAAACAGCTCATTTTGATTCTTCTTCACCAAGTTTTTCTTCATCTAATTCAACAGGATCTGCTTCTAGCCAAATAAAGAACACTACGACAAATTTAGTGAGAAATTCGAGGAATATTGAAGGTAGTAAATGGGGACTTGAAGAGAAATTGCCAGTTTCGAATA</genome_strand>
        <mrna_strand>CAAATCAAAAGTGGGATGTTAATAAACTCTCTC-AACAAAGAAAAAGCCTAAAAGTCTCCAAGTTTTGGTTTTTAAACTCCTCAAAGTTCTTCTATTCGATCAATAAAGTACGTTGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTAATATACATTCCCAATTCCGGAGATACATTGAGTCAAATCGAAGAAACATCGTTCTCTTCCTCTTCTTTCTGTCTTTTTTATTTTAAAAATGGAGAAGCTTATCAATCCTTACGATAAGGAATACATGAAGATGGCGATGTTAAAGCATGAAGAGATCTTCAGAGAACAG..................................................................................GTGTACGAACTGCATCGTCTATATCAAACACAGAAATTGCTGATGAGAAACATGTCAAGTAGTACTAATAATCGGCCTCAACAAGATCATCATCAAGTAGTGGTAAACCAATTAGACTCGAACAAAAAGATAACTGCTCGTCAATGTATTGACTTGGAAATAAGGCCAAATACAGACGAAGAACACATTGCAGAATCAGGTGGTGAAGATGATACTCATGAATTGGAATTAACATTAGGGCTATCAAGTTACAACGTTCGTCGAAGGAGAAAAACAGCTCATTTTGATTCTTCTTCACCAAGTTTTTCTTCATCTAAATTCACAGGATCTGCTTCTAGCCAAATAAAGAACACTACGACNAATTTAGTGAGAAATTCGAGGAATATTGAAGGTAGTAAATGGGGACTTGAAGAAGAATTGCCAGTTTCGAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E377556" ref_strand="+" ref_description="SGN-E377556 [TUS-20-H9]">
      <seq>aaaattaaaagtgggatgttaataaactctctcaaacaaagaaaaagcctaaaagtctccaagttttggtttttaaactcctcaaagttcttctattcgatcaataaagtacgttgcaggtactaatatacattcccaattccggagatacattgagtcaaatcgaagaaacatcgttctcttcctcttctttctgtcttttttattttaaaaatggagaagcttatcaatccttacgataaggaatacatgaagatggcgatgttaaagcatgaagagatcttcagagaacaggtgtacgaactgcatcgtctatatcaaacacagaaattgctgatgagaaacatgtcaagtagtactaataatcggcctcaacaagatcatcatcaagtagtggtaaaccaattagactcgaacaaaaagataactgctcgtcaatgtattgacttggaaataaggccaaatacagacgaagaacacattgcagaatcaggtggtgaagatgatactcatgaattggaattaacattagggctatcaagttacaacgttcgtcgaaggagaaaaacagctcattttgattcttcttcaccaagtttttcttcatctaattcaacaggatctgcttctagccaaataaagaacactacgacaaatttagtgagaaattcgaggaatattgaaggtagtaaatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="68582" stop="70750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68882" g_stop="69000" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69001" i_stop="69790" i_length="790">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69791" g_stop="69965" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="294" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69966" i_stop="70047" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70048" g_stop="70450" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="697" r_length="403" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E377556" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377556" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68882" e_stop="69000"/>
          <exon e_start="69791" e_stop="69965"/>
          <exon e_start="70048" e_stop="70450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTAAAAGTGGGATGTTAATAAACTCTCTCAAACAAAGAAAAAGCCTAAAAGTCTCCAAGTTTTGGTTTTTAAACTCCTCAAAGTTCTTCTATTCGATCAATAAAGTACGTTGCAGGTAAGGACGCTGAATTCAATCATAAAAAAATATGTATTTTTTCTTGCTCTTTCTTTCTTTCTTTGGTACTCTATAATTTAAGTTCATTTTTATAATTTACATGAACATTATTGTTGCATGCTTAGCGTCGATCAACGACAAAAATAATCAAAAATATCCATCTGATCATCAATTAATAGCTAGCAAATTTCTTTGATACACGGAATGGAATTATATGTTTTCTAATTACCTATCTAATGAAAACTAAAAATATCGAAAACGTATTAACAAAAAAAAAGAAGTGAGAAAAGCATGTGGCATGCCGTAAACTGGTAACAGAGAATAGTTTAATTTGTCGAAAAATATCTGTATTTTTTTTAGGATATATGAATTAACTTGATTTTACAAGAATATTACTACTGTTGTTATGATGGTGATATATATATATATATGTTGATCATGTCTTGCTTTATAATAGGACATATATAGATGATTTATGTATATAATGCTGTTGTTATTATTATTGGTGTGGCCCAAATTGACAGTAATTTGTATGGAAAAGAACGAACAATAAAAACAAACAAAATCACACATGCCAAAATAGGGGTACTGCGTTAATCTCCTTCAGTCATAAAAAAGTTGTGCAATAAATTGGGAAGCTTGATATTTTCTTAGATCATAGCCTTTAACGTCTATCAACTTCTTTTCTATTATTATTATTATTATTACAACAATTAAATAGCTACTATTTCTTTATTCATTTTTCAATTTTTTTTTAAAAAAAAACTTACTTGATTTCTGCTTCTTTTAGGTACTAATATACATTCCCAATTCCGGAGATACATTGAGTCAAATCGAAGAAACATCGTTCTCTTCCTCTTCTTTCTGTCTTTTTTATTTTAAAAATGGAGAAGCTTATCAATCCTTACGATAAGGAATACATGAAGATGGCGATGTTAAAGCATGAAGAGATCTTCAGAGAACAGGTAAATTTATATTATGTTTCGTTCTGAATCAACTGACTCTAGATTTTATTTATTAATTGCTTAACGACATGTGTTTTGTCAGGTGTACGAACTGCATCGTCTATATCAAACACAGAAATTGCTGATGAGAAACATGTCAAGTAGTACTAATAATCGGCCTCAACAAGATCATCATCAAGTAGTGGTAAACCAATTAGACTCGAACAAAAAGATAACTGCTCGTCAATGTATTGACTTGGAAATAAGGCCAAATACAGACGAAGAACACATTGCAGAATCAGGTGGTGAAGATGATACTCATGAATTGGAATTAACATTAGGGCTATCAAGTTACAACGTTCGTCGAAGGAGAAAAACAGCTCATTTTGATTCTTCTTCACCAAGTTTTTCTTCATCTAATTCAACAGGATCTGCTTCTAGCCAAATAAAGAACACTACGACAAATTTAGTGAGAAATTCGAGGAATATTGAAGGTAGTAAATGGG</genome_strand>
        <mrna_strand>AAAATTAAAAGTGGGATGTTAATAAACTCTCTCAAACAAAGAAAAAGCCTAAAAGTCTCCAAGTTTTGGTTTTTAAACTCCTCAAAGTTCTTCTATTCGATCAATAAAGTACGTTGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTAATATACATTCCCAATTCCGGAGATACATTGAGTCAAATCGAAGAAACATCGTTCTCTTCCTCTTCTTTCTGTCTTTTTTATTTTAAAAATGGAGAAGCTTATCAATCCTTACGATAAGGAATACATGAAGATGGCGATGTTAAAGCATGAAGAGATCTTCAGAGAACAG..................................................................................GTGTACGAACTGCATCGTCTATATCAAACACAGAAATTGCTGATGAGAAACATGTCAAGTAGTACTAATAATCGGCCTCAACAAGATCATCATCAAGTAGTGGTAAACCAATTAGACTCGAACAAAAAGATAACTGCTCGTCAATGTATTGACTTGGAAATAAGGCCAAATACAGACGAAGAACACATTGCAGAATCAGGTGGTGAAGATGATACTCATGAATTGGAATTAACATTAGGGCTATCAAGTTACAACGTTCGTCGAAGGAGAAAAACAGCTCATTTTGATTCTTCTTCACCAAGTTTTTCTTCATCTAATTCAACAGGATCTGCTTCTAGCCAAATAAAGAACACTACGACAAATTTAGTGAGAAATTCGAGGAATATTGAAGGTAGTAAATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E550129" ref_strand="+" ref_description="SGN-E550129 [TUS-5-G31]">
      <seq>caatttcaaagtgggatgttaataaactctctcaaacaaagaaaaagcctaaaagtctccaagtcctggtttttaaactcctcaaagttcttctattcgatcaataaagtacgttgcaggtactaatatacattcccaattccggagatacattgagtcaaatcgaagaaacatcgttctcttcctcttctttctgtcttttttattttaaaaatggagaagcttatcaatccttacgataaggaatacatgaagatggcgatgttaaagcatgaagagatcttcagagaacaggtgtacgaactgcatcgtctatatcaaacacagaaattgctgatgagaaacatgtcaagtagtactaataatcggcctcaacaagatcatcatcaagtagtggtaaaccaattagactcgaacaaaaagataactgctcgtcaatgtattgacttggaaataaggccaaatacagacgaagaacacattgcagaatcaggtggtgaagatgatactcatgaattggaattaacattagggctatcaagttacaacgttcgtcgaaggagaaaacagctcattttgattcttcttcaccnagtttttcttcatctaattcaacaggatctgcttctgagccaataaagaacactnacgacaatttagtgagaaattcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="68583" stop="70725"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68882" g_stop="69000" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69001" i_stop="69790" i_length="790">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69791" g_stop="69965" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="294" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69966" i_stop="70047" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70048" g_stop="70425" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="671" r_length="377" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E550129" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550129" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68882" e_stop="69000"/>
          <exon e_start="69791" e_stop="69965"/>
          <exon e_start="70048" e_stop="70425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTAAAAGTGGGATGTTAATAAACTCTCTCAAACAAAGAAAAAGCCTAAAAGTCTCCAAGTTTTGGTTTTTAAACTCCTCAAAGTTCTTCTATTCGATCAATAAAGTACGTTGCAGGTAAGGACGCTGAATTCAATCATAAAAAAATATGTATTTTTTCTTGCTCTTTCTTTCTTTCTTTGGTACTCTATAATTTAAGTTCATTTTTATAATTTACATGAACATTATTGTTGCATGCTTAGCGTCGATCAACGACAAAAATAATCAAAAATATCCATCTGATCATCAATTAATAGCTAGCAAATTTCTTTGATACACGGAATGGAATTATATGTTTTCTAATTACCTATCTAATGAAAACTAAAAATATCGAAAACGTATTAACAAAAAAAAAGAAGTGAGAAAAGCATGTGGCATGCCGTAAACTGGTAACAGAGAATAGTTTAATTTGTCGAAAAATATCTGTATTTTTTTTAGGATATATGAATTAACTTGATTTTACAAGAATATTACTACTGTTGTTATGATGGTGATATATATATATATATGTTGATCATGTCTTGCTTTATAATAGGACATATATAGATGATTTATGTATATAATGCTGTTGTTATTATTATTGGTGTGGCCCAAATTGACAGTAATTTGTATGGAAAAGAACGAACAATAAAAACAAACAAAATCACACATGCCAAAATAGGGGTACTGCGTTAATCTCCTTCAGTCATAAAAAAGTTGTGCAATAAATTGGGAAGCTTGATATTTTCTTAGATCATAGCCTTTAACGTCTATCAACTTCTTTTCTATTATTATTATTATTATTACAACAATTAAATAGCTACTATTTCTTTATTCATTTTTCAATTTTTTTTTAAAAAAAAACTTACTTGATTTCTGCTTCTTTTAGGTACTAATATACATTCCCAATTCCGGAGATACATTGAGTCAAATCGAAGAAACATCGTTCTCTTCCTCTTCTTTCTGTCTTTTTTATTTTAAAAATGGAGAAGCTTATCAATCCTTACGATAAGGAATACATGAAGATGGCGATGTTAAAGCATGAAGAGATCTTCAGAGAACAGGTAAATTTATATTATGTTTCGTTCTGAATCAACTGACTCTAGATTTTATTTATTAATTGCTTAACGACATGTGTTTTGTCAGGTGTACGAACTGCATCGTCTATATCAAACACAGAAATTGCTGATGAGAAACATGTCAAGTAGTACTAATAATCGGCCTCAACAAGATCATCATCAAGTAGTGGTAAACCAATTAGACTCGAACAAAAAGATAACTGCTCGTCAATGTATTGACTTGGAAATAAGGCCAAATACAGACGAAGAACACATTGCAGAATCAGGTGGTGAAGATGATACTCATGAATTGGAATTAACATTAGGGCTATCAAGTTACAACGTTCGTCGAAGGAGAAAAACAGCTCATTTTGATTCTTCTTCACCAAGTTTTTCTTCATCTAATTCAACAGGATCTGCTTCTAGCCAAATAAAGAACACT-ACGACAAATTTAGTGAGAAATTCG</genome_strand>
        <mrna_strand>CAATTTCAAAGTGGGATGTTAATAAACTCTCTCAAACAAAGAAAAAGCCTAAAAGTCTCCAAGTCCTGGTTTTTAAACTCCTCAAAGTTCTTCTATTCGATCAATAAAGTACGTTGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTAATATACATTCCCAATTCCGGAGATACATTGAGTCAAATCGAAGAAACATCGTTCTCTTCCTCTTCTTTCTGTCTTTTTTATTTTAAAAATGGAGAAGCTTATCAATCCTTACGATAAGGAATACATGAAGATGGCGATGTTAAAGCATGAAGAGATCTTCAGAGAACAG..................................................................................GTGTACGAACTGCATCGTCTATATCAAACACAGAAATTGCTGATGAGAAACATGTCAAGTAGTACTAATAATCGGCCTCAACAAGATCATCATCAAGTAGTGGTAAACCAATTAGACTCGAACAAAAAGATAACTGCTCGTCAATGTATTGACTTGGAAATAAGGCCAAATACAGACGAAGAACACATTGCAGAATCAGGTGGTGAAGATGATACTCATGAATTGGAATTAACATTAGGGCTATCAAGTTACAACGTTCGTCGAAGGAG-AAAACAGCTCATTTTGATTCTTCTTCACCNAGTTTTTCTTCATCTAATTCAACAGGATCTGCTTCTGAGCCAATAAAGAACACTNACGAC-AATTTAGTGAGAAATTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E232976" ref_strand="+" ref_description="SGN-E232976 [cLED-6-M20]">
      <seq>aaaattaaaagtgggatgttaataaactctctcaaacaaagaaaaagcctaaaagtctccaagttttggtttttaaactcctcaaagttcttctattcgatcaataaagtacgttgcaggtactaatatacattcccaattccggagatacattgagtcaaatcgaagaaacatcgttctcttcctcttctttctgtcttttttattttaaaaatggagaagcttatcaatccttacgataaggaatacatgaagatggcgatgttaaagcatgaagagatcttcagagaacaggtgtacgaactgcatcgtctatatcaaacacagaaattgctgatgagaaacatgtcaagtagtactaataatcggcctcaacaagatcatcatcaagtagtggtaaaccaattagactcgaacaaaaagataactgctcgtcaatgtattgacttggaaataaggccaaatacagacgaagaacacattgcagaatcaggtggtgaagatgatactcatgaattggaattaacattagggctatcaagttacaacgttcgtcgaaggagaaaaacagctcattttgattcttcttcaccaagtttttcttcatctaattcaacaggatctgcttctagccaaataaagaacactacgacaaatttagtgagaaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="68582" stop="70724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68882" g_stop="69000" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69001" i_stop="69790" i_length="790">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69791" g_stop="69965" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="294" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69966" i_stop="70047" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70048" g_stop="70424" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="671" r_length="377" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E232976" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232976" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68882" e_stop="69000"/>
          <exon e_start="69791" e_stop="69965"/>
          <exon e_start="70048" e_stop="70424"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTAAAAGTGGGATGTTAATAAACTCTCTCAAACAAAGAAAAAGCCTAAAAGTCTCCAAGTTTTGGTTTTTAAACTCCTCAAAGTTCTTCTATTCGATCAATAAAGTACGTTGCAGGTAAGGACGCTGAATTCAATCATAAAAAAATATGTATTTTTTCTTGCTCTTTCTTTCTTTCTTTGGTACTCTATAATTTAAGTTCATTTTTATAATTTACATGAACATTATTGTTGCATGCTTAGCGTCGATCAACGACAAAAATAATCAAAAATATCCATCTGATCATCAATTAATAGCTAGCAAATTTCTTTGATACACGGAATGGAATTATATGTTTTCTAATTACCTATCTAATGAAAACTAAAAATATCGAAAACGTATTAACAAAAAAAAAGAAGTGAGAAAAGCATGTGGCATGCCGTAAACTGGTAACAGAGAATAGTTTAATTTGTCGAAAAATATCTGTATTTTTTTTAGGATATATGAATTAACTTGATTTTACAAGAATATTACTACTGTTGTTATGATGGTGATATATATATATATATGTTGATCATGTCTTGCTTTATAATAGGACATATATAGATGATTTATGTATATAATGCTGTTGTTATTATTATTGGTGTGGCCCAAATTGACAGTAATTTGTATGGAAAAGAACGAACAATAAAAACAAACAAAATCACACATGCCAAAATAGGGGTACTGCGTTAATCTCCTTCAGTCATAAAAAAGTTGTGCAATAAATTGGGAAGCTTGATATTTTCTTAGATCATAGCCTTTAACGTCTATCAACTTCTTTTCTATTATTATTATTATTATTACAACAATTAAATAGCTACTATTTCTTTATTCATTTTTCAATTTTTTTTTAAAAAAAAACTTACTTGATTTCTGCTTCTTTTAGGTACTAATATACATTCCCAATTCCGGAGATACATTGAGTCAAATCGAAGAAACATCGTTCTCTTCCTCTTCTTTCTGTCTTTTTTATTTTAAAAATGGAGAAGCTTATCAATCCTTACGATAAGGAATACATGAAGATGGCGATGTTAAAGCATGAAGAGATCTTCAGAGAACAGGTAAATTTATATTATGTTTCGTTCTGAATCAACTGACTCTAGATTTTATTTATTAATTGCTTAACGACATGTGTTTTGTCAGGTGTACGAACTGCATCGTCTATATCAAACACAGAAATTGCTGATGAGAAACATGTCAAGTAGTACTAATAATCGGCCTCAACAAGATCATCATCAAGTAGTGGTAAACCAATTAGACTCGAACAAAAAGATAACTGCTCGTCAATGTATTGACTTGGAAATAAGGCCAAATACAGACGAAGAACACATTGCAGAATCAGGTGGTGAAGATGATACTCATGAATTGGAATTAACATTAGGGCTATCAAGTTACAACGTTCGTCGAAGGAGAAAAACAGCTCATTTTGATTCTTCTTCACCAAGTTTTTCTTCATCTAATTCAACAGGATCTGCTTCTAGCCAAATAAAGAACACTACGACAAATTTAGTGAGAAATTC</genome_strand>
        <mrna_strand>AAAATTAAAAGTGGGATGTTAATAAACTCTCTCAAACAAAGAAAAAGCCTAAAAGTCTCCAAGTTTTGGTTTTTAAACTCCTCAAAGTTCTTCTATTCGATCAATAAAGTACGTTGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTAATATACATTCCCAATTCCGGAGATACATTGAGTCAAATCGAAGAAACATCGTTCTCTTCCTCTTCTTTCTGTCTTTTTTATTTTAAAAATGGAGAAGCTTATCAATCCTTACGATAAGGAATACATGAAGATGGCGATGTTAAAGCATGAAGAGATCTTCAGAGAACAG..................................................................................GTGTACGAACTGCATCGTCTATATCAAACACAGAAATTGCTGATGAGAAACATGTCAAGTAGTACTAATAATCGGCCTCAACAAGATCATCATCAAGTAGTGGTAAACCAATTAGACTCGAACAAAAAGATAACTGCTCGTCAATGTATTGACTTGGAAATAAGGCCAAATACAGACGAAGAACACATTGCAGAATCAGGTGGTGAAGATGATACTCATGAATTGGAATTAACATTAGGGCTATCAAGTTACAACGTTCGTCGAAGGAGAAAAACAGCTCATTTTGATTCTTCTTCACCAAGTTTTTCTTCATCTAATTCAACAGGATCTGCTTCTAGCCAAATAAAGAACACTACGACAAATTTAGTGAGAAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E242762" ref_strand="+" ref_description="SGN-E242762 [cLED-31-K6]">
      <seq>aaaattaaaagtgggatgttaataaactctctcattcaaagaaaaagcctaaaagtctccaagtgtgtggtttttaaactcctcaaagttcttctattcgatcaataaagtacgttgcaggtactaatatacattcccaattccggagatacattgagtcaaatcgaagaaacatcgttctcttcctcttctttctgtcttttttattttaaaaatggagaagcttatcaatccttacgataaggaatacatgaagatggcgatgttaaagcatgaagagatcttcagagaacaggtgtacgaactgcatcgtctatatcaaacacagaaattgctgatgagaaacatgtcaagtagtactaataatcggcctcaacaagatcatcatcaagtagtggtaaaccaattagactcgaacaaaaagataactgctcgtcaatgtattgacttggaaataaggccaaatacagacgaagaacacattgcagaatcaggtggcgaagatgatacttatgaattggaattaacattagggcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="68582" stop="70590"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68882" g_stop="69000" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69001" i_stop="69790" i_length="790">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69791" g_stop="69965" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="295" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69966" i_stop="70047" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70048" g_stop="70290" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="538" r_length="243" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E242762" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68882" e_stop="69000"/>
          <exon e_start="69791" e_stop="69965"/>
          <exon e_start="70048" e_stop="70290"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTAAAAGTGGGATGTTAATAAACTCTCTCAAACAAAGAAAAAGCCTAAAAGTCTCCAAGT-TTTGGTTTTTAAACTCCTCAAAGTTCTTCTATTCGATCAATAAAGTACGTTGCAGGTAAGGACGCTGAATTCAATCATAAAAAAATATGTATTTTTTCTTGCTCTTTCTTTCTTTCTTTGGTACTCTATAATTTAAGTTCATTTTTATAATTTACATGAACATTATTGTTGCATGCTTAGCGTCGATCAACGACAAAAATAATCAAAAATATCCATCTGATCATCAATTAATAGCTAGCAAATTTCTTTGATACACGGAATGGAATTATATGTTTTCTAATTACCTATCTAATGAAAACTAAAAATATCGAAAACGTATTAACAAAAAAAAAGAAGTGAGAAAAGCATGTGGCATGCCGTAAACTGGTAACAGAGAATAGTTTAATTTGTCGAAAAATATCTGTATTTTTTTTAGGATATATGAATTAACTTGATTTTACAAGAATATTACTACTGTTGTTATGATGGTGATATATATATATATATGTTGATCATGTCTTGCTTTATAATAGGACATATATAGATGATTTATGTATATAATGCTGTTGTTATTATTATTGGTGTGGCCCAAATTGACAGTAATTTGTATGGAAAAGAACGAACAATAAAAACAAACAAAATCACACATGCCAAAATAGGGGTACTGCGTTAATCTCCTTCAGTCATAAAAAAGTTGTGCAATAAATTGGGAAGCTTGATATTTTCTTAGATCATAGCCTTTAACGTCTATCAACTTCTTTTCTATTATTATTATTATTATTACAACAATTAAATAGCTACTATTTCTTTATTCATTTTTCAATTTTTTTTTAAAAAAAAACTTACTTGATTTCTGCTTCTTTTAGGTACTAATATACATTCCCAATTCCGGAGATACATTGAGTCAAATCGAAGAAACATCGTTCTCTTCCTCTTCTTTCTGTCTTTTTTATTTTAAAAATGGAGAAGCTTATCAATCCTTACGATAAGGAATACATGAAGATGGCGATGTTAAAGCATGAAGAGATCTTCAGAGAACAGGTAAATTTATATTATGTTTCGTTCTGAATCAACTGACTCTAGATTTTATTTATTAATTGCTTAACGACATGTGTTTTGTCAGGTGTACGAACTGCATCGTCTATATCAAACACAGAAATTGCTGATGAGAAACATGTCAAGTAGTACTAATAATCGGCCTCAACAAGATCATCATCAAGTAGTGGTAAACCAATTAGACTCGAACAAAAAGATAACTGCTCGTCAATGTATTGACTTGGAAATAAGGCCAAATACAGACGAAGAACACATTGCAGAATCAGGTGGTGAAGATGATACTCATGAATTGGAATTAACATTAGGGCTA</genome_strand>
        <mrna_strand>AAAATTAAAAGTGGGATGTTAATAAACTCTCTCATTCAAAGAAAAAGCCTAAAAGTCTCCAAGTGTGTGGTTTTTAAACTCCTCAAAGTTCTTCTATTCGATCAATAAAGTACGTTGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTAATATACATTCCCAATTCCGGAGATACATTGAGTCAAATCGAAGAAACATCGTTCTCTTCCTCTTCTTTCTGTCTTTTTTATTTTAAAAATGGAGAAGCTTATCAATCCTTACGATAAGGAATACATGAAGATGGCGATGTTAAAGCATGAAGAGATCTTCAGAGAACAG..................................................................................GTGTACGAACTGCATCGTCTATATCAAACACAGAAATTGCTGATGAGAAACATGTCAAGTAGTACTAATAATCGGCCTCAACAAGATCATCATCAAGTAGTGGTAAACCAATTAGACTCGAACAAAAAGATAACTGCTCGTCAATGTATTGACTTGGAAATAAGGCCAAATACAGACGAAGAACACATTGCAGAATCAGGTGGCGAAGATGATACTTATGAATTGGAATTAACATTAGGGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E227050" ref_strand="+" ref_description="SGN-E227050 [cLED-1-N6]">
      <seq>aaaattaaaagtgggatgttaataaactctctcaaacaaagaaaaagcctaaaagtctccaagttttggtttttaaactcctcaaagttcttttattcgatcaataaagtacgttgcaggtactaatatacattcccaattccggagatacattgagtcaaatcgaagaaacatcgttctcttcctcttctttctgtcttttttattttaaaaatggagaagcttatcaatccttacgataaggaatacatgaagatggcgatgttaaagcatgaagagatcttcagagaacaggtgtacgaactgcatcgtctatatcaaacacagaaattgctgatgagaaacatgtcaagtagtactaataatcggcctcaacaagatcatcatcaagtagtggtaaaccaattagactcgaacaaaaagataactgctcgtcaatgtattgacttggaaataaggccaaatacagacgaagaacacattgcagaatcaggtggtgaagatgatactcatgaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="68582" stop="70571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68882" g_stop="69000" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69001" i_stop="69790" i_length="790">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69791" g_stop="69965" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="294" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69966" i_stop="70047" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70048" g_stop="70271" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="518" r_length="224" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E227050" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E227050" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68882" e_stop="69000"/>
          <exon e_start="69791" e_stop="69965"/>
          <exon e_start="70048" e_stop="70271"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTAAAAGTGGGATGTTAATAAACTCTCTCAAACAAAGAAAAAGCCTAAAAGTCTCCAAGTTTTGGTTTTTAAACTCCTCAAAGTTCTTCTATTCGATCAATAAAGTACGTTGCAGGTAAGGACGCTGAATTCAATCATAAAAAAATATGTATTTTTTCTTGCTCTTTCTTTCTTTCTTTGGTACTCTATAATTTAAGTTCATTTTTATAATTTACATGAACATTATTGTTGCATGCTTAGCGTCGATCAACGACAAAAATAATCAAAAATATCCATCTGATCATCAATTAATAGCTAGCAAATTTCTTTGATACACGGAATGGAATTATATGTTTTCTAATTACCTATCTAATGAAAACTAAAAATATCGAAAACGTATTAACAAAAAAAAAGAAGTGAGAAAAGCATGTGGCATGCCGTAAACTGGTAACAGAGAATAGTTTAATTTGTCGAAAAATATCTGTATTTTTTTTAGGATATATGAATTAACTTGATTTTACAAGAATATTACTACTGTTGTTATGATGGTGATATATATATATATATGTTGATCATGTCTTGCTTTATAATAGGACATATATAGATGATTTATGTATATAATGCTGTTGTTATTATTATTGGTGTGGCCCAAATTGACAGTAATTTGTATGGAAAAGAACGAACAATAAAAACAAACAAAATCACACATGCCAAAATAGGGGTACTGCGTTAATCTCCTTCAGTCATAAAAAAGTTGTGCAATAAATTGGGAAGCTTGATATTTTCTTAGATCATAGCCTTTAACGTCTATCAACTTCTTTTCTATTATTATTATTATTATTACAACAATTAAATAGCTACTATTTCTTTATTCATTTTTCAATTTTTTTTTAAAAAAAAACTTACTTGATTTCTGCTTCTTTTAGGTACTAATATACATTCCCAATTCCGGAGATACATTGAGTCAAATCGAAGAAACATCGTTCTCTTCCTCTTCTTTCTGTCTTTTTTATTTTAAAAATGGAGAAGCTTATCAATCCTTACGATAAGGAATACATGAAGATGGCGATGTTAAAGCATGAAGAGATCTTCAGAGAACAGGTAAATTTATATTATGTTTCGTTCTGAATCAACTGACTCTAGATTTTATTTATTAATTGCTTAACGACATGTGTTTTGTCAGGTGTACGAACTGCATCGTCTATATCAAACACAGAAATTGCTGATGAGAAACATGTCAAGTAGTACTAATAATCGGCCTCAACAAGATCATCATCAAGTAGTGGTAAACCAATTAGACTCGAACAAAAAGATAACTGCTCGTCAATGTATTGACTTGGAAATAAGGCCAAATACAGACGAAGAACACATTGCAGAATCAGGTGGTGAAGATGATACTCATGAATT</genome_strand>
        <mrna_strand>AAAATTAAAAGTGGGATGTTAATAAACTCTCTCAAACAAAGAAAAAGCCTAAAAGTCTCCAAGTTTTGGTTTTTAAACTCCTCAAAGTTCTTTTATTCGATCAATAAAGTACGTTGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTAATATACATTCCCAATTCCGGAGATACATTGAGTCAAATCGAAGAAACATCGTTCTCTTCCTCTTCTTTCTGTCTTTTTTATTTTAAAAATGGAGAAGCTTATCAATCCTTACGATAAGGAATACATGAAGATGGCGATGTTAAAGCATGAAGAGATCTTCAGAGAACAG..................................................................................GTGTACGAACTGCATCGTCTATATCAAACACAGAAATTGCTGATGAGAAACATGTCAAGTAGTACTAATAATCGGCCTCAACAAGATCATCATCAAGTAGTGGTAAACCAATTAGACTCGAACAAAAAGATAACTGCTCGTCAATGTATTGACTTGGAAATAAGGCCAAATACAGACGAAGAACACATTGCAGAATCAGGTGGTGAAGATGATACTCATGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E231321" ref_strand="+" ref_description="SGN-E231321 [cLED-10-F19]">
      <seq>aaaattaaaagtgggatgttaataaactctctcaaacaaagaaaaagcctaaaagtctccaagttttggtttttaaactcctcaaagttcttctattcgatcaataaagtacgttgcaggtactaatatacattcccaattccggagatacattgagtcaaatcgaagaaacatcggtctcttcctcttctttctgtcttttttattttaaaaatggagaagcttatcaatccttacgataaggaatacatgaagatggcgatgttaaagcatgaagagatcttcagagaacaggtgtacgaactgcatcgtctatatcaaacacagaaattgctgatgagaaacatgtcaagtagtactaataatcggcctcaacaagatcatcatcaagtagtggtaaaccaattagactcgaacaaaaagataactgctcgtcaatgtattgacttggaaataaggccaaatacagacgaagaacacattgcagaatcaggtggggaagatgatactcatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="68582" stop="70569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68882" g_stop="69000" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69001" i_stop="69790" i_length="790">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69791" g_stop="69965" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="294" r_length="175" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69966" i_stop="70047" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70048" g_stop="70269" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="516" r_length="222" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E231321" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68882" e_stop="69000"/>
          <exon e_start="69791" e_stop="69965"/>
          <exon e_start="70048" e_stop="70269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTAAAAGTGGGATGTTAATAAACTCTCTCAAACAAAGAAAAAGCCTAAAAGTCTCCAAGTTTTGGTTTTTAAACTCCTCAAAGTTCTTCTATTCGATCAATAAAGTACGTTGCAGGTAAGGACGCTGAATTCAATCATAAAAAAATATGTATTTTTTCTTGCTCTTTCTTTCTTTCTTTGGTACTCTATAATTTAAGTTCATTTTTATAATTTACATGAACATTATTGTTGCATGCTTAGCGTCGATCAACGACAAAAATAATCAAAAATATCCATCTGATCATCAATTAATAGCTAGCAAATTTCTTTGATACACGGAATGGAATTATATGTTTTCTAATTACCTATCTAATGAAAACTAAAAATATCGAAAACGTATTAACAAAAAAAAAGAAGTGAGAAAAGCATGTGGCATGCCGTAAACTGGTAACAGAGAATAGTTTAATTTGTCGAAAAATATCTGTATTTTTTTTAGGATATATGAATTAACTTGATTTTACAAGAATATTACTACTGTTGTTATGATGGTGATATATATATATATATGTTGATCATGTCTTGCTTTATAATAGGACATATATAGATGATTTATGTATATAATGCTGTTGTTATTATTATTGGTGTGGCCCAAATTGACAGTAATTTGTATGGAAAAGAACGAACAATAAAAACAAACAAAATCACACATGCCAAAATAGGGGTACTGCGTTAATCTCCTTCAGTCATAAAAAAGTTGTGCAATAAATTGGGAAGCTTGATATTTTCTTAGATCATAGCCTTTAACGTCTATCAACTTCTTTTCTATTATTATTATTATTATTACAACAATTAAATAGCTACTATTTCTTTATTCATTTTTCAATTTTTTTTTAAAAAAAAACTTACTTGATTTCTGCTTCTTTTAGGTACTAATATACATTCCCAATTCCGGAGATACATTGAGTCAAATCGAAGAAACATCGTTCTCTTCCTCTTCTTTCTGTCTTTTTTATTTTAAAAATGGAGAAGCTTATCAATCCTTACGATAAGGAATACATGAAGATGGCGATGTTAAAGCATGAAGAGATCTTCAGAGAACAGGTAAATTTATATTATGTTTCGTTCTGAATCAACTGACTCTAGATTTTATTTATTAATTGCTTAACGACATGTGTTTTGTCAGGTGTACGAACTGCATCGTCTATATCAAACACAGAAATTGCTGATGAGAAACATGTCAAGTAGTACTAATAATCGGCCTCAACAAGATCATCATCAAGTAGTGGTAAACCAATTAGACTCGAACAAAAAGATAACTGCTCGTCAATGTATTGACTTGGAAATAAGGCCAAATACAGACGAAGAACACATTGCAGAATCAGGTGGTGAAGATGATACTCATGAA</genome_strand>
        <mrna_strand>AAAATTAAAAGTGGGATGTTAATAAACTCTCTCAAACAAAGAAAAAGCCTAAAAGTCTCCAAGTTTTGGTTTTTAAACTCCTCAAAGTTCTTCTATTCGATCAATAAAGTACGTTGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTAATATACATTCCCAATTCCGGAGATACATTGAGTCAAATCGAAGAAACATCGGTCTCTTCCTCTTCTTTCTGTCTTTTTTATTTTAAAAATGGAGAAGCTTATCAATCCTTACGATAAGGAATACATGAAGATGGCGATGTTAAAGCATGAAGAGATCTTCAGAGAACAG..................................................................................GTGTACGAACTGCATCGTCTATATCAAACACAGAAATTGCTGATGAGAAACATGTCAAGTAGTACTAATAATCGGCCTCAACAAGATCATCATCAAGTAGTGGTAAACCAATTAGACTCGAACAAAAAGATAACTGCTCGTCAATGTATTGACTTGGAAATAAGGCCAAATACAGACGAAGAACACATTGCAGAATCAGGTGGGGAAGATGATACTCATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E242833" ref_strand="+" ref_description="SGN-E242833 [cLED-31-F16]">
      <seq>aaaattaaaagtgggatgttaataaactctctcaaacaaagaaaaagcctaaaagtctccaagttttggtttttaaactcctcaaagttcttctattcgatcaataaagtacgttgcangtactaatatacattcccaattccggagatacattgagtcaaatcgaagaaacatcgttctcttcctcttctttctgtcttttttattttaaaaatggagaagcttatcaatccttacgataaggaatacatgaagatggcgatgttaaagcatgaagagatcttcagagaacaggtgtacgaactgcatcgtctatatcaaacacagaaattgctgatgagaaacatgtcaagtagtactaataatcggcctcaacaagatcatcatcaagtagtggtaaaccaattagactcgaacaaaaagataactgctcgtcaatgtattgacttggaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="68582" stop="70509"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68882" g_stop="69000" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69001" i_stop="69790" i_length="790">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69791" g_stop="69965" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="294" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69966" i_stop="70047" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70048" g_stop="70209" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="456" r_length="162" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E242833" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242833" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68882" e_stop="69000"/>
          <exon e_start="69791" e_stop="69965"/>
          <exon e_start="70048" e_stop="70209"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTAAAAGTGGGATGTTAATAAACTCTCTCAAACAAAGAAAAAGCCTAAAAGTCTCCAAGTTTTGGTTTTTAAACTCCTCAAAGTTCTTCTATTCGATCAATAAAGTACGTTGCAGGTAAGGACGCTGAATTCAATCATAAAAAAATATGTATTTTTTCTTGCTCTTTCTTTCTTTCTTTGGTACTCTATAATTTAAGTTCATTTTTATAATTTACATGAACATTATTGTTGCATGCTTAGCGTCGATCAACGACAAAAATAATCAAAAATATCCATCTGATCATCAATTAATAGCTAGCAAATTTCTTTGATACACGGAATGGAATTATATGTTTTCTAATTACCTATCTAATGAAAACTAAAAATATCGAAAACGTATTAACAAAAAAAAAGAAGTGAGAAAAGCATGTGGCATGCCGTAAACTGGTAACAGAGAATAGTTTAATTTGTCGAAAAATATCTGTATTTTTTTTAGGATATATGAATTAACTTGATTTTACAAGAATATTACTACTGTTGTTATGATGGTGATATATATATATATATGTTGATCATGTCTTGCTTTATAATAGGACATATATAGATGATTTATGTATATAATGCTGTTGTTATTATTATTGGTGTGGCCCAAATTGACAGTAATTTGTATGGAAAAGAACGAACAATAAAAACAAACAAAATCACACATGCCAAAATAGGGGTACTGCGTTAATCTCCTTCAGTCATAAAAAAGTTGTGCAATAAATTGGGAAGCTTGATATTTTCTTAGATCATAGCCTTTAACGTCTATCAACTTCTTTTCTATTATTATTATTATTATTACAACAATTAAATAGCTACTATTTCTTTATTCATTTTTCAATTTTTTTTTAAAAAAAAACTTACTTGATTTCTGCTTCTTTTAGGTACTAATATACATTCCCAATTCCGGAGATACATTGAGTCAAATCGAAGAAACATCGTTCTCTTCCTCTTCTTTCTGTCTTTTTTATTTTAAAAATGGAGAAGCTTATCAATCCTTACGATAAGGAATACATGAAGATGGCGATGTTAAAGCATGAAGAGATCTTCAGAGAACAGGTAAATTTATATTATGTTTCGTTCTGAATCAACTGACTCTAGATTTTATTTATTAATTGCTTAACGACATGTGTTTTGTCAGGTGTACGAACTGCATCGTCTATATCAAACACAGAAATTGCTGATGAGAAACATGTCAAGTAGTACTAATAATCGGCCTCAACAAGATCATCATCAAGTAGTGGTAAACCAATTAGACTCGAACAAAAAGATAACTGCTCGTCAATGTATTGACTTGGAAATA</genome_strand>
        <mrna_strand>AAAATTAAAAGTGGGATGTTAATAAACTCTCTCAAACAAAGAAAAAGCCTAAAAGTCTCCAAGTTTTGGTTTTTAAACTCCTCAAAGTTCTTCTATTCGATCAATAAAGTACGTTGCAN......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTAATATACATTCCCAATTCCGGAGATACATTGAGTCAAATCGAAGAAACATCGTTCTCTTCCTCTTCTTTCTGTCTTTTTTATTTTAAAAATGGAGAAGCTTATCAATCCTTACGATAAGGAATACATGAAGATGGCGATGTTAAAGCATGAAGAGATCTTCAGAGAACAG..................................................................................GTGTACGAACTGCATCGTCTATATCAAACACAGAAATTGCTGATGAGAAACATGTCAAGTAGTACTAATAATCGGCCTCAACAAGATCATCATCAAGTAGTGGTAAACCAATTAGACTCGAACAAAAAGATAACTGCTCGTCAATGTATTGACTTGGAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E238077" ref_strand="+" ref_description="SGN-E238077 [cLED-22-O11]">
      <seq>aaaattaaaagtgggatgttaataaactctctcaaacaaagaaaaagcctaaaagtctccaagttttggtttttaaactcctcaaagttcttctattcgatcaataaagtacgttgcaggtactaatatacattcccaattccggagatacattgagtcaaatcgaagaaacatcgttctcttcctcttctttctgtcttttttattttaaaaatggagaagcttatcaatccttacgataaggaatacatgaagatggcgatgttaaagcatgaagagatcttcagagaacaggtgttcgaactgcatcgtctataatcaaacacagaaattgctgatgagaaacatgtcaagtagtgctaataatcggcctcaacaagatcatcatgaagtagtggtaaaccaatttgactcgaacaaaaagataactgctcgtcaatgtattgacttggaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="68582" stop="70508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68882" g_stop="69000" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69001" i_stop="69790" i_length="790">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69791" g_stop="69965" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="294" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69966" i_stop="70047" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70048" g_stop="70208" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="456" r_length="162" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E238077" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238077" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68882" e_stop="69000"/>
          <exon e_start="69791" e_stop="69965"/>
          <exon e_start="70048" e_stop="70208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTAAAAGTGGGATGTTAATAAACTCTCTCAAACAAAGAAAAAGCCTAAAAGTCTCCAAGTTTTGGTTTTTAAACTCCTCAAAGTTCTTCTATTCGATCAATAAAGTACGTTGCAGGTAAGGACGCTGAATTCAATCATAAAAAAATATGTATTTTTTCTTGCTCTTTCTTTCTTTCTTTGGTACTCTATAATTTAAGTTCATTTTTATAATTTACATGAACATTATTGTTGCATGCTTAGCGTCGATCAACGACAAAAATAATCAAAAATATCCATCTGATCATCAATTAATAGCTAGCAAATTTCTTTGATACACGGAATGGAATTATATGTTTTCTAATTACCTATCTAATGAAAACTAAAAATATCGAAAACGTATTAACAAAAAAAAAGAAGTGAGAAAAGCATGTGGCATGCCGTAAACTGGTAACAGAGAATAGTTTAATTTGTCGAAAAATATCTGTATTTTTTTTAGGATATATGAATTAACTTGATTTTACAAGAATATTACTACTGTTGTTATGATGGTGATATATATATATATATGTTGATCATGTCTTGCTTTATAATAGGACATATATAGATGATTTATGTATATAATGCTGTTGTTATTATTATTGGTGTGGCCCAAATTGACAGTAATTTGTATGGAAAAGAACGAACAATAAAAACAAACAAAATCACACATGCCAAAATAGGGGTACTGCGTTAATCTCCTTCAGTCATAAAAAAGTTGTGCAATAAATTGGGAAGCTTGATATTTTCTTAGATCATAGCCTTTAACGTCTATCAACTTCTTTTCTATTATTATTATTATTATTACAACAATTAAATAGCTACTATTTCTTTATTCATTTTTCAATTTTTTTTTAAAAAAAAACTTACTTGATTTCTGCTTCTTTTAGGTACTAATATACATTCCCAATTCCGGAGATACATTGAGTCAAATCGAAGAAACATCGTTCTCTTCCTCTTCTTTCTGTCTTTTTTATTTTAAAAATGGAGAAGCTTATCAATCCTTACGATAAGGAATACATGAAGATGGCGATGTTAAAGCATGAAGAGATCTTCAGAGAACAGGTAAATTTATATTATGTTTCGTTCTGAATCAACTGACTCTAGATTTTATTTATTAATTGCTTAACGACATGTGTTTTGTCAGGTGTACGAACTGCATCGTCTAT-ATCAAACACAGAAATTGCTGATGAGAAACATGTCAAGTAGTACTAATAATCGGCCTCAACAAGATCATCATCAAGTAGTGGTAAACCAATTAGACTCGAACAAAAAGATAACTGCTCGTCAATGTATTGACTTGGAAAT</genome_strand>
        <mrna_strand>AAAATTAAAAGTGGGATGTTAATAAACTCTCTCAAACAAAGAAAAAGCCTAAAAGTCTCCAAGTTTTGGTTTTTAAACTCCTCAAAGTTCTTCTATTCGATCAATAAAGTACGTTGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTAATATACATTCCCAATTCCGGAGATACATTGAGTCAAATCGAAGAAACATCGTTCTCTTCCTCTTCTTTCTGTCTTTTTTATTTTAAAAATGGAGAAGCTTATCAATCCTTACGATAAGGAATACATGAAGATGGCGATGTTAAAGCATGAAGAGATCTTCAGAGAACAG..................................................................................GTGTTCGAACTGCATCGTCTATAATCAAACACAGAAATTGCTGATGAGAAACATGTCAAGTAGTGCTAATAATCGGCCTCAACAAGATCATCATGAAGTAGTGGTAAACCAATTTGACTCGAACAAAAAGATAACTGCTCGTCAATGTATTGACTTGGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E233477" ref_strand="+" ref_description="SGN-E233477 [cLED-9-N6]">
      <seq>aaaattaaaagtgggatgttaataaactctctcaaacaaagaaaaagcctaaaagtctccaagttttggtttttaaactcctcaaagttcttctattcgatcaataaagtacgttgcaggtactaatatacattcccaattccggagatacattgagtcaaatcgaagaaacatcgttctcttcctcttctttctgtcttttttattttaaaaatggagaagcttatcaatccttacgataaggaatacatgaagatggcgatgttaaagcatgaagagatcttcagagaacaggtgtacgaactgcatcgtctatatcaaacacagaaattgctgatgagaaacatgtcaagtagtactaataatcggcctcaacaagatcatcatcaagtagtggtaaaccaattagactcgaacaaaaagataactgctcgtcaatgtattgacttggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="68582" stop="70507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68882" g_stop="69000" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69001" i_stop="69790" i_length="790">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69791" g_stop="69965" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="294" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69966" i_stop="70047" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70048" g_stop="70207" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="454" r_length="160" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E233477" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233477" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68882" e_stop="69000"/>
          <exon e_start="69791" e_stop="69965"/>
          <exon e_start="70048" e_stop="70207"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTAAAAGTGGGATGTTAATAAACTCTCTCAAACAAAGAAAAAGCCTAAAAGTCTCCAAGTTTTGGTTTTTAAACTCCTCAAAGTTCTTCTATTCGATCAATAAAGTACGTTGCAGGTAAGGACGCTGAATTCAATCATAAAAAAATATGTATTTTTTCTTGCTCTTTCTTTCTTTCTTTGGTACTCTATAATTTAAGTTCATTTTTATAATTTACATGAACATTATTGTTGCATGCTTAGCGTCGATCAACGACAAAAATAATCAAAAATATCCATCTGATCATCAATTAATAGCTAGCAAATTTCTTTGATACACGGAATGGAATTATATGTTTTCTAATTACCTATCTAATGAAAACTAAAAATATCGAAAACGTATTAACAAAAAAAAAGAAGTGAGAAAAGCATGTGGCATGCCGTAAACTGGTAACAGAGAATAGTTTAATTTGTCGAAAAATATCTGTATTTTTTTTAGGATATATGAATTAACTTGATTTTACAAGAATATTACTACTGTTGTTATGATGGTGATATATATATATATATGTTGATCATGTCTTGCTTTATAATAGGACATATATAGATGATTTATGTATATAATGCTGTTGTTATTATTATTGGTGTGGCCCAAATTGACAGTAATTTGTATGGAAAAGAACGAACAATAAAAACAAACAAAATCACACATGCCAAAATAGGGGTACTGCGTTAATCTCCTTCAGTCATAAAAAAGTTGTGCAATAAATTGGGAAGCTTGATATTTTCTTAGATCATAGCCTTTAACGTCTATCAACTTCTTTTCTATTATTATTATTATTATTACAACAATTAAATAGCTACTATTTCTTTATTCATTTTTCAATTTTTTTTTAAAAAAAAACTTACTTGATTTCTGCTTCTTTTAGGTACTAATATACATTCCCAATTCCGGAGATACATTGAGTCAAATCGAAGAAACATCGTTCTCTTCCTCTTCTTTCTGTCTTTTTTATTTTAAAAATGGAGAAGCTTATCAATCCTTACGATAAGGAATACATGAAGATGGCGATGTTAAAGCATGAAGAGATCTTCAGAGAACAGGTAAATTTATATTATGTTTCGTTCTGAATCAACTGACTCTAGATTTTATTTATTAATTGCTTAACGACATGTGTTTTGTCAGGTGTACGAACTGCATCGTCTATATCAAACACAGAAATTGCTGATGAGAAACATGTCAAGTAGTACTAATAATCGGCCTCAACAAGATCATCATCAAGTAGTGGTAAACCAATTAGACTCGAACAAAAAGATAACTGCTCGTCAATGTATTGACTTGGAAA</genome_strand>
        <mrna_strand>AAAATTAAAAGTGGGATGTTAATAAACTCTCTCAAACAAAGAAAAAGCCTAAAAGTCTCCAAGTTTTGGTTTTTAAACTCCTCAAAGTTCTTCTATTCGATCAATAAAGTACGTTGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTAATATACATTCCCAATTCCGGAGATACATTGAGTCAAATCGAAGAAACATCGTTCTCTTCCTCTTCTTTCTGTCTTTTTTATTTTAAAAATGGAGAAGCTTATCAATCCTTACGATAAGGAATACATGAAGATGGCGATGTTAAAGCATGAAGAGATCTTCAGAGAACAG..................................................................................GTGTACGAACTGCATCGTCTATATCAAACACAGAAATTGCTGATGAGAAACATGTCAAGTAGTACTAATAATCGGCCTCAACAAGATCATCATCAAGTAGTGGTAAACCAATTAGACTCGAACAAAAAGATAACTGCTCGTCAATGTATTGACTTGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E242175" ref_strand="+" ref_description="SGN-E242175 [cLED-37-E5]">
      <seq>aaaattaaaagtgggatgttaataaactctctcaaacaaagaaaaagcctaaaagtctccaagttttggtttttaaactcctcaaagttcttctattcgatcaataaagtacgttgcaggtactaatatacattcccaattccggagatacattgagtcaaatcgaagaaacatcgntctcttcctcttctttctgtcttttttattttaaaaatggagaagcttatcaatccttacgataaggaatacatgaagatggcgatgttaaagcatgaagagatcttcagagaacaggtgtacgaactgcatcgtctatatcaaacacagaaattgctgatgagaaacatgtcaagtagtactaataatcggcctcaacaagatcatcatcaagtagtggtaaaccaattagactcgaacaaaaagataactgctcgtcaatgtattgacttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="68582" stop="70505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68882" g_stop="69000" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69001" i_stop="69790" i_length="790">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69791" g_stop="69965" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="294" r_length="175" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69966" i_stop="70047" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70048" g_stop="70205" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="452" r_length="158" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E242175" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242175" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68882" e_stop="69000"/>
          <exon e_start="69791" e_stop="69965"/>
          <exon e_start="70048" e_stop="70205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTAAAAGTGGGATGTTAATAAACTCTCTCAAACAAAGAAAAAGCCTAAAAGTCTCCAAGTTTTGGTTTTTAAACTCCTCAAAGTTCTTCTATTCGATCAATAAAGTACGTTGCAGGTAAGGACGCTGAATTCAATCATAAAAAAATATGTATTTTTTCTTGCTCTTTCTTTCTTTCTTTGGTACTCTATAATTTAAGTTCATTTTTATAATTTACATGAACATTATTGTTGCATGCTTAGCGTCGATCAACGACAAAAATAATCAAAAATATCCATCTGATCATCAATTAATAGCTAGCAAATTTCTTTGATACACGGAATGGAATTATATGTTTTCTAATTACCTATCTAATGAAAACTAAAAATATCGAAAACGTATTAACAAAAAAAAAGAAGTGAGAAAAGCATGTGGCATGCCGTAAACTGGTAACAGAGAATAGTTTAATTTGTCGAAAAATATCTGTATTTTTTTTAGGATATATGAATTAACTTGATTTTACAAGAATATTACTACTGTTGTTATGATGGTGATATATATATATATATGTTGATCATGTCTTGCTTTATAATAGGACATATATAGATGATTTATGTATATAATGCTGTTGTTATTATTATTGGTGTGGCCCAAATTGACAGTAATTTGTATGGAAAAGAACGAACAATAAAAACAAACAAAATCACACATGCCAAAATAGGGGTACTGCGTTAATCTCCTTCAGTCATAAAAAAGTTGTGCAATAAATTGGGAAGCTTGATATTTTCTTAGATCATAGCCTTTAACGTCTATCAACTTCTTTTCTATTATTATTATTATTATTACAACAATTAAATAGCTACTATTTCTTTATTCATTTTTCAATTTTTTTTTAAAAAAAAACTTACTTGATTTCTGCTTCTTTTAGGTACTAATATACATTCCCAATTCCGGAGATACATTGAGTCAAATCGAAGAAACATCGTTCTCTTCCTCTTCTTTCTGTCTTTTTTATTTTAAAAATGGAGAAGCTTATCAATCCTTACGATAAGGAATACATGAAGATGGCGATGTTAAAGCATGAAGAGATCTTCAGAGAACAGGTAAATTTATATTATGTTTCGTTCTGAATCAACTGACTCTAGATTTTATTTATTAATTGCTTAACGACATGTGTTTTGTCAGGTGTACGAACTGCATCGTCTATATCAAACACAGAAATTGCTGATGAGAAACATGTCAAGTAGTACTAATAATCGGCCTCAACAAGATCATCATCAAGTAGTGGTAAACCAATTAGACTCGAACAAAAAGATAACTGCTCGTCAATGTATTGACTTGGA</genome_strand>
        <mrna_strand>AAAATTAAAAGTGGGATGTTAATAAACTCTCTCAAACAAAGAAAAAGCCTAAAAGTCTCCAAGTTTTGGTTTTTAAACTCCTCAAAGTTCTTCTATTCGATCAATAAAGTACGTTGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTAATATACATTCCCAATTCCGGAGATACATTGAGTCAAATCGAAGAAACATCGNTCTCTTCCTCTTCTTTCTGTCTTTTTTATTTTAAAAATGGAGAAGCTTATCAATCCTTACGATAAGGAATACATGAAGATGGCGATGTTAAAGCATGAAGAGATCTTCAGAGAACAG..................................................................................GTGTACGAACTGCATCGTCTATATCAAACACAGAAATTGCTGATGAGAAACATGTCAAGTAGTACTAATAATCGGCCTCAACAAGATCATCATCAAGTAGTGGTAAACCAATTAGACTCGAACAAAAAGATAACTGCTCGTCAATGTATTGACTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E232917" ref_strand="+" ref_description="SGN-E232917 [cLED-8-J8]">
      <seq>aaaattaaaagtgggatgttaataaactctctcaaacaaagaaaaagcctaaaagtctccaagttttggtttttaaactcctcaaagttcttctattcgatcaataaagtacgttgcaggtactaatatacattcccaattccggagatacattgagtcaaatcgaagaaacatcgttctcttcctcttctttctgtcttttttattttaaaaatggagaagcttatcaatccttacgataaggaatacatgaagatggcgatgttaaagcatgaagagatcttcagagaacaggtgtacgaactgcatcgtctatatcaaacacagaaattgctgatgagaaacatgtcaagtagtactaataatcggcctcaacaagatcatcatcaagtagtggtaaaccaattagactcgaacaaaaagataactgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="68582" stop="70486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68882" g_stop="69000" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69001" i_stop="69790" i_length="790">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69791" g_stop="69965" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="294" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69966" i_stop="70047" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70048" g_stop="70186" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="433" r_length="139" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E232917" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232917" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68882" e_stop="69000"/>
          <exon e_start="69791" e_stop="69965"/>
          <exon e_start="70048" e_stop="70186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTAAAAGTGGGATGTTAATAAACTCTCTCAAACAAAGAAAAAGCCTAAAAGTCTCCAAGTTTTGGTTTTTAAACTCCTCAAAGTTCTTCTATTCGATCAATAAAGTACGTTGCAGGTAAGGACGCTGAATTCAATCATAAAAAAATATGTATTTTTTCTTGCTCTTTCTTTCTTTCTTTGGTACTCTATAATTTAAGTTCATTTTTATAATTTACATGAACATTATTGTTGCATGCTTAGCGTCGATCAACGACAAAAATAATCAAAAATATCCATCTGATCATCAATTAATAGCTAGCAAATTTCTTTGATACACGGAATGGAATTATATGTTTTCTAATTACCTATCTAATGAAAACTAAAAATATCGAAAACGTATTAACAAAAAAAAAGAAGTGAGAAAAGCATGTGGCATGCCGTAAACTGGTAACAGAGAATAGTTTAATTTGTCGAAAAATATCTGTATTTTTTTTAGGATATATGAATTAACTTGATTTTACAAGAATATTACTACTGTTGTTATGATGGTGATATATATATATATATGTTGATCATGTCTTGCTTTATAATAGGACATATATAGATGATTTATGTATATAATGCTGTTGTTATTATTATTGGTGTGGCCCAAATTGACAGTAATTTGTATGGAAAAGAACGAACAATAAAAACAAACAAAATCACACATGCCAAAATAGGGGTACTGCGTTAATCTCCTTCAGTCATAAAAAAGTTGTGCAATAAATTGGGAAGCTTGATATTTTCTTAGATCATAGCCTTTAACGTCTATCAACTTCTTTTCTATTATTATTATTATTATTACAACAATTAAATAGCTACTATTTCTTTATTCATTTTTCAATTTTTTTTTAAAAAAAAACTTACTTGATTTCTGCTTCTTTTAGGTACTAATATACATTCCCAATTCCGGAGATACATTGAGTCAAATCGAAGAAACATCGTTCTCTTCCTCTTCTTTCTGTCTTTTTTATTTTAAAAATGGAGAAGCTTATCAATCCTTACGATAAGGAATACATGAAGATGGCGATGTTAAAGCATGAAGAGATCTTCAGAGAACAGGTAAATTTATATTATGTTTCGTTCTGAATCAACTGACTCTAGATTTTATTTATTAATTGCTTAACGACATGTGTTTTGTCAGGTGTACGAACTGCATCGTCTATATCAAACACAGAAATTGCTGATGAGAAACATGTCAAGTAGTACTAATAATCGGCCTCAACAAGATCATCATCAAGTAGTGGTAAACCAATTAGACTCGAACAAAAAGATAACTGCTC</genome_strand>
        <mrna_strand>AAAATTAAAAGTGGGATGTTAATAAACTCTCTCAAACAAAGAAAAAGCCTAAAAGTCTCCAAGTTTTGGTTTTTAAACTCCTCAAAGTTCTTCTATTCGATCAATAAAGTACGTTGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTAATATACATTCCCAATTCCGGAGATACATTGAGTCAAATCGAAGAAACATCGTTCTCTTCCTCTTCTTTCTGTCTTTTTTATTTTAAAAATGGAGAAGCTTATCAATCCTTACGATAAGGAATACATGAAGATGGCGATGTTAAAGCATGAAGAGATCTTCAGAGAACAG..................................................................................GTGTACGAACTGCATCGTCTATATCAAACACAGAAATTGCTGATGAGAAACATGTCAAGTAGTACTAATAATCGGCCTCAACAAGATCATCATCAAGTAGTGGTAAACCAATTAGACTCGAACAAAAAGATAACTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E238170" ref_strand="+" ref_description="SGN-E238170 [cLED-22-E1]">
      <seq>aaaattaaaagtgggatgttaataaactctctcaaacaaagaaaaagcctaaaagtctccaagttttggtttttaaactcctcaaagttcttctattcgatcaataaagtacgttgcaggtactaatatacattcccaattccggagatacattgagtcaaatcgaagaaacatcgntctcttcctcttctttctgtcttttttattttaaaaatggagaagcttatcaatccttacgataaggaatacatgaagatggcgatgttaaagcatgaagagatcttcagagaacaggtgtacgaactgcatcgtctatatcaaacacagaaattgctgatgagaaacatgtcaagtagtactaataatcggcctcaacaagatcatcatcaagtagtggtaaaccaattagactcgaacaaaaagataact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="68582" stop="70482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68882" g_stop="69000" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69001" i_stop="69790" i_length="790">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69791" g_stop="69965" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="294" r_length="175" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69966" i_stop="70047" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70048" g_stop="70182" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="429" r_length="135" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E238170" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238170" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68882" e_stop="69000"/>
          <exon e_start="69791" e_stop="69965"/>
          <exon e_start="70048" e_stop="70182"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTAAAAGTGGGATGTTAATAAACTCTCTCAAACAAAGAAAAAGCCTAAAAGTCTCCAAGTTTTGGTTTTTAAACTCCTCAAAGTTCTTCTATTCGATCAATAAAGTACGTTGCAGGTAAGGACGCTGAATTCAATCATAAAAAAATATGTATTTTTTCTTGCTCTTTCTTTCTTTCTTTGGTACTCTATAATTTAAGTTCATTTTTATAATTTACATGAACATTATTGTTGCATGCTTAGCGTCGATCAACGACAAAAATAATCAAAAATATCCATCTGATCATCAATTAATAGCTAGCAAATTTCTTTGATACACGGAATGGAATTATATGTTTTCTAATTACCTATCTAATGAAAACTAAAAATATCGAAAACGTATTAACAAAAAAAAAGAAGTGAGAAAAGCATGTGGCATGCCGTAAACTGGTAACAGAGAATAGTTTAATTTGTCGAAAAATATCTGTATTTTTTTTAGGATATATGAATTAACTTGATTTTACAAGAATATTACTACTGTTGTTATGATGGTGATATATATATATATATGTTGATCATGTCTTGCTTTATAATAGGACATATATAGATGATTTATGTATATAATGCTGTTGTTATTATTATTGGTGTGGCCCAAATTGACAGTAATTTGTATGGAAAAGAACGAACAATAAAAACAAACAAAATCACACATGCCAAAATAGGGGTACTGCGTTAATCTCCTTCAGTCATAAAAAAGTTGTGCAATAAATTGGGAAGCTTGATATTTTCTTAGATCATAGCCTTTAACGTCTATCAACTTCTTTTCTATTATTATTATTATTATTACAACAATTAAATAGCTACTATTTCTTTATTCATTTTTCAATTTTTTTTTAAAAAAAAACTTACTTGATTTCTGCTTCTTTTAGGTACTAATATACATTCCCAATTCCGGAGATACATTGAGTCAAATCGAAGAAACATCGTTCTCTTCCTCTTCTTTCTGTCTTTTTTATTTTAAAAATGGAGAAGCTTATCAATCCTTACGATAAGGAATACATGAAGATGGCGATGTTAAAGCATGAAGAGATCTTCAGAGAACAGGTAAATTTATATTATGTTTCGTTCTGAATCAACTGACTCTAGATTTTATTTATTAATTGCTTAACGACATGTGTTTTGTCAGGTGTACGAACTGCATCGTCTATATCAAACACAGAAATTGCTGATGAGAAACATGTCAAGTAGTACTAATAATCGGCCTCAACAAGATCATCATCAAGTAGTGGTAAACCAATTAGACTCGAACAAAAAGATAACT</genome_strand>
        <mrna_strand>AAAATTAAAAGTGGGATGTTAATAAACTCTCTCAAACAAAGAAAAAGCCTAAAAGTCTCCAAGTTTTGGTTTTTAAACTCCTCAAAGTTCTTCTATTCGATCAATAAAGTACGTTGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTAATATACATTCCCAATTCCGGAGATACATTGAGTCAAATCGAAGAAACATCGNTCTCTTCCTCTTCTTTCTGTCTTTTTTATTTTAAAAATGGAGAAGCTTATCAATCCTTACGATAAGGAATACATGAAGATGGCGATGTTAAAGCATGAAGAGATCTTCAGAGAACAG..................................................................................GTGTACGAACTGCATCGTCTATATCAAACACAGAAATTGCTGATGAGAAACATGTCAAGTAGTACTAATAATCGGCCTCAACAAGATCATCATCAAGTAGTGGTAAACCAATTAGACTCGAACAAAAAGATAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E242518" ref_strand="+" ref_description="SGN-E242518 [cLED-30-I4]">
      <seq>aaaattaaaagtgggatgttaataaactctctcaaacaaagaaaaagcctaaaagtctccaagttttggttttgaaactcctcaaagatcttctattcgatcaataaagtacgttgcaggtactaatatacattcccaattccggagatacattgagtcaaatcgaagaaacatcgttctcttcctcttctttctgtcttttttattttaaaaatggagaagcttatcaatccttacgataaggaatacatgaagatggcgatgttaaagcatgaagagatcttcagagaacaggggtacgaactgcatcgtctatattaaacacagaaattgctgatgagaaacatgtcaagtagtactaataatcggcctcaacaagatcatcatcaagtagtggtaaaccaattagactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="68582" stop="70466"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68882" g_stop="69000" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69001" i_stop="69790" i_length="790">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69791" g_stop="69965" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="294" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69966" i_stop="70047" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70048" g_stop="70167" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="414" r_length="120" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E242518" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68882" e_stop="69000"/>
          <exon e_start="69791" e_stop="69965"/>
          <exon e_start="70048" e_stop="70167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTAAAAGTGGGATGTTAATAAACTCTCTCAAACAAAGAAAAAGCCTAAAAGTCTCCAAGTTTTGGTTTTTAAACTCCTCAAAGTTCTTCTATTCGATCAATAAAGTACGTTGCAGGTAAGGACGCTGAATTCAATCATAAAAAAATATGTATTTTTTCTTGCTCTTTCTTTCTTTCTTTGGTACTCTATAATTTAAGTTCATTTTTATAATTTACATGAACATTATTGTTGCATGCTTAGCGTCGATCAACGACAAAAATAATCAAAAATATCCATCTGATCATCAATTAATAGCTAGCAAATTTCTTTGATACACGGAATGGAATTATATGTTTTCTAATTACCTATCTAATGAAAACTAAAAATATCGAAAACGTATTAACAAAAAAAAAGAAGTGAGAAAAGCATGTGGCATGCCGTAAACTGGTAACAGAGAATAGTTTAATTTGTCGAAAAATATCTGTATTTTTTTTAGGATATATGAATTAACTTGATTTTACAAGAATATTACTACTGTTGTTATGATGGTGATATATATATATATATGTTGATCATGTCTTGCTTTATAATAGGACATATATAGATGATTTATGTATATAATGCTGTTGTTATTATTATTGGTGTGGCCCAAATTGACAGTAATTTGTATGGAAAAGAACGAACAATAAAAACAAACAAAATCACACATGCCAAAATAGGGGTACTGCGTTAATCTCCTTCAGTCATAAAAAAGTTGTGCAATAAATTGGGAAGCTTGATATTTTCTTAGATCATAGCCTTTAACGTCTATCAACTTCTTTTCTATTATTATTATTATTATTACAACAATTAAATAGCTACTATTTCTTTATTCATTTTTCAATTTTTTTTTAAAAAAAAACTTACTTGATTTCTGCTTCTTTTAGGTACTAATATACATTCCCAATTCCGGAGATACATTGAGTCAAATCGAAGAAACATCGTTCTCTTCCTCTTCTTTCTGTCTTTTTTATTTTAAAAATGGAGAAGCTTATCAATCCTTACGATAAGGAATACATGAAGATGGCGATGTTAAAGCATGAAGAGATCTTCAGAGAACAGGTAAATTTATATTATGTTTCGTTCTGAATCAACTGACTCTAGATTTTATTTATTAATTGCTTAACGACATGTGTTTTGTCAGGTGTACGAACTGCATCGTCTATATCAAACACAGAAATTGCTGATGAGAAACATGTCAAGTAGTACTAATAATCGGCCTCAACAAGATCATCATCAAGTAGTGGTAAACCAATTAGACTCG</genome_strand>
        <mrna_strand>AAAATTAAAAGTGGGATGTTAATAAACTCTCTCAAACAAAGAAAAAGCCTAAAAGTCTCCAAGTTTTGGTTTTGAAACTCCTCAAAGATCTTCTATTCGATCAATAAAGTACGTTGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTAATATACATTCCCAATTCCGGAGATACATTGAGTCAAATCGAAGAAACATCGTTCTCTTCCTCTTCTTTCTGTCTTTTTTATTTTAAAAATGGAGAAGCTTATCAATCCTTACGATAAGGAATACATGAAGATGGCGATGTTAAAGCATGAAGAGATCTTCAGAGAACAG..................................................................................GGGTACGAACTGCATCGTCTATATTAAACACAGAAATTGCTGATGAGAAACATGTCAAGTAGTACTAATAATCGGCCTCAACAAGATCATCATCAAGTAGTGGTAAACCAATTAGACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E206658" ref_strand="+" ref_description="SGN-E206658 [cLEC-31-F14]">
      <seq>aaaagtgggatgttaataaactctctcaaacaaagaaaaagcctaaaagtctccaagttttggtttttaaactcctcaaagttcttctattcgatcaataaagtacgttgcaggtactaatatacattcccaattccggagatacattgagtcaaatcgaagaaacatcgttctcttcctcttctttctgtcttttttattttaaaaatggagaagcttatcaatccttacgataaggaatacatgaagatggcgatgttaaagcatgaagagatcttcagagaacaggtgtacgaactgcatcgtctatatcaaacacagaaattgctgatgagaaacatgtcaagtagtactaataatcggcctcaacaagatcatcatcaagtagtggtaaaccaattagactcgaacaaaaagataactgctcgtcaatgtattgacttggaaataaggccaaatacagacgaagaacacattgcagaatcaggtggtgaagatgatactcatgaattggaattaacattagggctatcaagttacaacgttcgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="68588" stop="70609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68888" g_stop="69000" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69001" i_stop="69790" i_length="790">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69791" g_stop="69965" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="288" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69966" i_stop="70047" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70048" g_stop="70309" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="550" r_length="262" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E206658" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206658" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68888" e_stop="69000"/>
          <exon e_start="69791" e_stop="69965"/>
          <exon e_start="70048" e_stop="70309"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTGGGATGTTAATAAACTCTCTCAAACAAAGAAAAAGCCTAAAAGTCTCCAAGTTTTGGTTTTTAAACTCCTCAAAGTTCTTCTATTCGATCAATAAAGTACGTTGCAGGTAAGGACGCTGAATTCAATCATAAAAAAATATGTATTTTTTCTTGCTCTTTCTTTCTTTCTTTGGTACTCTATAATTTAAGTTCATTTTTATAATTTACATGAACATTATTGTTGCATGCTTAGCGTCGATCAACGACAAAAATAATCAAAAATATCCATCTGATCATCAATTAATAGCTAGCAAATTTCTTTGATACACGGAATGGAATTATATGTTTTCTAATTACCTATCTAATGAAAACTAAAAATATCGAAAACGTATTAACAAAAAAAAAGAAGTGAGAAAAGCATGTGGCATGCCGTAAACTGGTAACAGAGAATAGTTTAATTTGTCGAAAAATATCTGTATTTTTTTTAGGATATATGAATTAACTTGATTTTACAAGAATATTACTACTGTTGTTATGATGGTGATATATATATATATATGTTGATCATGTCTTGCTTTATAATAGGACATATATAGATGATTTATGTATATAATGCTGTTGTTATTATTATTGGTGTGGCCCAAATTGACAGTAATTTGTATGGAAAAGAACGAACAATAAAAACAAACAAAATCACACATGCCAAAATAGGGGTACTGCGTTAATCTCCTTCAGTCATAAAAAAGTTGTGCAATAAATTGGGAAGCTTGATATTTTCTTAGATCATAGCCTTTAACGTCTATCAACTTCTTTTCTATTATTATTATTATTATTACAACAATTAAATAGCTACTATTTCTTTATTCATTTTTCAATTTTTTTTTAAAAAAAAACTTACTTGATTTCTGCTTCTTTTAGGTACTAATATACATTCCCAATTCCGGAGATACATTGAGTCAAATCGAAGAAACATCGTTCTCTTCCTCTTCTTTCTGTCTTTTTTATTTTAAAAATGGAGAAGCTTATCAATCCTTACGATAAGGAATACATGAAGATGGCGATGTTAAAGCATGAAGAGATCTTCAGAGAACAGGTAAATTTATATTATGTTTCGTTCTGAATCAACTGACTCTAGATTTTATTTATTAATTGCTTAACGACATGTGTTTTGTCAGGTGTACGAACTGCATCGTCTATATCAAACACAGAAATTGCTGATGAGAAACATGTCAAGTAGTACTAATAATCGGCCTCAACAAGATCATCATCAAGTAGTGGTAAACCAATTAGACTCGAACAAAAAGATAACTGCTCGTCAATGTATTGACTTGGAAATAAGGCCAAATACAGACGAAGAACACATTGCAGAATCAGGTGGTGAAGATGATACTCATGAATTGGAATTAACATTAGGGCTATCAAGTTACAACGTTCGTC</genome_strand>
        <mrna_strand>AAAAGTGGGATGTTAATAAACTCTCTCAAACAAAGAAAAAGCCTAAAAGTCTCCAAGTTTTGGTTTTTAAACTCCTCAAAGTTCTTCTATTCGATCAATAAAGTACGTTGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTAATATACATTCCCAATTCCGGAGATACATTGAGTCAAATCGAAGAAACATCGTTCTCTTCCTCTTCTTTCTGTCTTTTTTATTTTAAAAATGGAGAAGCTTATCAATCCTTACGATAAGGAATACATGAAGATGGCGATGTTAAAGCATGAAGAGATCTTCAGAGAACAG..................................................................................GTGTACGAACTGCATCGTCTATATCAAACACAGAAATTGCTGATGAGAAACATGTCAAGTAGTACTAATAATCGGCCTCAACAAGATCATCATCAAGTAGTGGTAAACCAATTAGACTCGAACAAAAAGATAACTGCTCGTCAATGTATTGACTTGGAAATAAGGCCAAATACAGACGAAGAACACATTGCAGAATCAGGTGGTGAAGATGATACTCATGAATTGGAATTAACATTAGGGCTATCAAGTTACAACGTTCGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E205030" ref_strand="+" ref_description="SGN-E205030 [cLEC-16-L3]">
      <seq>aaaagcctaaaagtctccaagttttggtttttaaactcctcaaagttcttctattcgatcaataaagtacgttgcaggtactaatatacattcccaattccggagatacattgagtcaaatcgaagaaacatcgttctcttcctcttctttctgtcttttttattttaaaaatggagaagcttatcaatccttacgataaggaatacatgaagatggcgatgttaaagcatgaagagatcttcagagaacaggtgtacgaactgcatcgtctatatcaaacacagaaattgctgatgagaaacatgtcaagtagtactaataatcggcctcaacaagatcatcatcaagtagtggtaaaccaattagactcgaacaaaaagataactgctcgtcaatgtattgacttggaaataaggccaaatacagacgaagaacacattgcagaatcaggtggtgaagatgatactcatgaattggaattaacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="68624" stop="70583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68924" g_stop="69000" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69001" i_stop="69790" i_length="790">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69791" g_stop="69965" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="252" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69966" i_stop="70047" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70048" g_stop="70283" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="488" r_length="236" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E205030" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205030" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68924" e_stop="69000"/>
          <exon e_start="69791" e_stop="69965"/>
          <exon e_start="70048" e_stop="70283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGCCTAAAAGTCTCCAAGTTTTGGTTTTTAAACTCCTCAAAGTTCTTCTATTCGATCAATAAAGTACGTTGCAGGTAAGGACGCTGAATTCAATCATAAAAAAATATGTATTTTTTCTTGCTCTTTCTTTCTTTCTTTGGTACTCTATAATTTAAGTTCATTTTTATAATTTACATGAACATTATTGTTGCATGCTTAGCGTCGATCAACGACAAAAATAATCAAAAATATCCATCTGATCATCAATTAATAGCTAGCAAATTTCTTTGATACACGGAATGGAATTATATGTTTTCTAATTACCTATCTAATGAAAACTAAAAATATCGAAAACGTATTAACAAAAAAAAAGAAGTGAGAAAAGCATGTGGCATGCCGTAAACTGGTAACAGAGAATAGTTTAATTTGTCGAAAAATATCTGTATTTTTTTTAGGATATATGAATTAACTTGATTTTACAAGAATATTACTACTGTTGTTATGATGGTGATATATATATATATATGTTGATCATGTCTTGCTTTATAATAGGACATATATAGATGATTTATGTATATAATGCTGTTGTTATTATTATTGGTGTGGCCCAAATTGACAGTAATTTGTATGGAAAAGAACGAACAATAAAAACAAACAAAATCACACATGCCAAAATAGGGGTACTGCGTTAATCTCCTTCAGTCATAAAAAAGTTGTGCAATAAATTGGGAAGCTTGATATTTTCTTAGATCATAGCCTTTAACGTCTATCAACTTCTTTTCTATTATTATTATTATTATTACAACAATTAAATAGCTACTATTTCTTTATTCATTTTTCAATTTTTTTTTAAAAAAAAACTTACTTGATTTCTGCTTCTTTTAGGTACTAATATACATTCCCAATTCCGGAGATACATTGAGTCAAATCGAAGAAACATCGTTCTCTTCCTCTTCTTTCTGTCTTTTTTATTTTAAAAATGGAGAAGCTTATCAATCCTTACGATAAGGAATACATGAAGATGGCGATGTTAAAGCATGAAGAGATCTTCAGAGAACAGGTAAATTTATATTATGTTTCGTTCTGAATCAACTGACTCTAGATTTTATTTATTAATTGCTTAACGACATGTGTTTTGTCAGGTGTACGAACTGCATCGTCTATATCAAACACAGAAATTGCTGATGAGAAACATGTCAAGTAGTACTAATAATCGGCCTCAACAAGATCATCATCAAGTAGTGGTAAACCAATTAGACTCGAACAAAAAGATAACTGCTCGTCAATGTATTGACTTGGAAATAAGGCCAAATACAGACGAAGAACACATTGCAGAATCAGGTGGTGAAGATGATACTCATGAATTGGAATTAACATT</genome_strand>
        <mrna_strand>AAAAGCCTAAAAGTCTCCAAGTTTTGGTTTTTAAACTCCTCAAAGTTCTTCTATTCGATCAATAAAGTACGTTGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTAATATACATTCCCAATTCCGGAGATACATTGAGTCAAATCGAAGAAACATCGTTCTCTTCCTCTTCTTTCTGTCTTTTTTATTTTAAAAATGGAGAAGCTTATCAATCCTTACGATAAGGAATACATGAAGATGGCGATGTTAAAGCATGAAGAGATCTTCAGAGAACAG..................................................................................GTGTACGAACTGCATCGTCTATATCAAACACAGAAATTGCTGATGAGAAACATGTCAAGTAGTACTAATAATCGGCCTCAACAAGATCATCATCAAGTAGTGGTAAACCAATTAGACTCGAACAAAAAGATAACTGCTCGTCAATGTATTGACTTGGAAATAAGGCCAAATACAGACGAAGAACACATTGCAGAATCAGGTGGTGAAGATGATACTCATGAATTGGAATTAACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E368725" ref_strand="+" ref_description="SGN-E368725 [TUS-22-H10]">
      <seq>taaaagtctccaagttttggtttttaaactcctcaaagttcttctattcgatcaataaagtacgttgcaggtactaatatacattcccaattccggagatacattgagtcaaatcgaagaaacatcgttctcttcctcttctttctgtcttttttattttaaaaatggagaagcttatcaatccttacgataaggaatacatgaagatggcgatgttaaagcatgaagagatcttcagagaacaggtgtacgaactgcatcgtctatatcaaacacagaaattgctgatgagaaacatgtcaagtagtactaataatcggcctcaacaagatcatcatcaagtagtggtaaaccaattagactcgaacaaaaagataactgctcgtcaatgtattgacttggaaataaggccaaatacagacgaagaacacattgcagaatcaggtggtgaagatgatactcatgaattggaattaacattagggctatcaagttacaacgttcgtcgaaggagaaaaacagctcattttgattcttcttcaccaagtttttcttcatctaattcaacaggatctgcttctagccaaataaagaacactacgacaaattttagtgagaaattcgaggaatattgaaggtagtaaatggggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="68631" stop="70754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68931" g_stop="69000" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69001" i_stop="69790" i_length="790">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69791" g_stop="69965" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="245" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69966" i_stop="70047" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70048" g_stop="70454" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="653" r_length="408" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E368725" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368725" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68931" e_stop="69000"/>
          <exon e_start="69791" e_stop="69965"/>
          <exon e_start="70048" e_stop="70454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAGTCTCCAAGTTTTGGTTTTTAAACTCCTCAAAGTTCTTCTATTCGATCAATAAAGTACGTTGCAGGTAAGGACGCTGAATTCAATCATAAAAAAATATGTATTTTTTCTTGCTCTTTCTTTCTTTCTTTGGTACTCTATAATTTAAGTTCATTTTTATAATTTACATGAACATTATTGTTGCATGCTTAGCGTCGATCAACGACAAAAATAATCAAAAATATCCATCTGATCATCAATTAATAGCTAGCAAATTTCTTTGATACACGGAATGGAATTATATGTTTTCTAATTACCTATCTAATGAAAACTAAAAATATCGAAAACGTATTAACAAAAAAAAAGAAGTGAGAAAAGCATGTGGCATGCCGTAAACTGGTAACAGAGAATAGTTTAATTTGTCGAAAAATATCTGTATTTTTTTTAGGATATATGAATTAACTTGATTTTACAAGAATATTACTACTGTTGTTATGATGGTGATATATATATATATATGTTGATCATGTCTTGCTTTATAATAGGACATATATAGATGATTTATGTATATAATGCTGTTGTTATTATTATTGGTGTGGCCCAAATTGACAGTAATTTGTATGGAAAAGAACGAACAATAAAAACAAACAAAATCACACATGCCAAAATAGGGGTACTGCGTTAATCTCCTTCAGTCATAAAAAAGTTGTGCAATAAATTGGGAAGCTTGATATTTTCTTAGATCATAGCCTTTAACGTCTATCAACTTCTTTTCTATTATTATTATTATTATTACAACAATTAAATAGCTACTATTTCTTTATTCATTTTTCAATTTTTTTTTAAAAAAAAACTTACTTGATTTCTGCTTCTTTTAGGTACTAATATACATTCCCAATTCCGGAGATACATTGAGTCAAATCGAAGAAACATCGTTCTCTTCCTCTTCTTTCTGTCTTTTTTATTTTAAAAATGGAGAAGCTTATCAATCCTTACGATAAGGAATACATGAAGATGGCGATGTTAAAGCATGAAGAGATCTTCAGAGAACAGGTAAATTTATATTATGTTTCGTTCTGAATCAACTGACTCTAGATTTTATTTATTAATTGCTTAACGACATGTGTTTTGTCAGGTGTACGAACTGCATCGTCTATATCAAACACAGAAATTGCTGATGAGAAACATGTCAAGTAGTACTAATAATCGGCCTCAACAAGATCATCATCAAGTAGTGGTAAACCAATTAGACTCGAACAAAAAGATAACTGCTCGTCAATGTATTGACTTGGAAATAAGGCCAAATACAGACGAAGAACACATTGCAGAATCAGGTGGTGAAGATGATACTCATGAATTGGAATTAACATTAGGGCTATCAAGTTACAACGTTCGTCGAAGGAGAAAAACAGCTCATTTTGATTCTTCTTCACCAAGTTTTTCTTCATCTAATTCAACAGGATCTGCTTCTAGCCAAATAAAGAACACTACGACAAA-TTTAGTGAGAAATTCGAGGAATATTGAAGGTAGTAAATGGGGACT</genome_strand>
        <mrna_strand>TAAAAGTCTCCAAGTTTTGGTTTTTAAACTCCTCAAAGTTCTTCTATTCGATCAATAAAGTACGTTGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTAATATACATTCCCAATTCCGGAGATACATTGAGTCAAATCGAAGAAACATCGTTCTCTTCCTCTTCTTTCTGTCTTTTTTATTTTAAAAATGGAGAAGCTTATCAATCCTTACGATAAGGAATACATGAAGATGGCGATGTTAAAGCATGAAGAGATCTTCAGAGAACAG..................................................................................GTGTACGAACTGCATCGTCTATATCAAACACAGAAATTGCTGATGAGAAACATGTCAAGTAGTACTAATAATCGGCCTCAACAAGATCATCATCAAGTAGTGGTAAACCAATTAGACTCGAACAAAAAGATAACTGCTCGTCAATGTATTGACTTGGAAATAAGGCCAAATACAGACGAAGAACACATTGCAGAATCAGGTGGTGAAGATGATACTCATGAATTGGAATTAACATTAGGGCTATCAAGTTACAACGTTCGTCGAAGGAGAAAAACAGCTCATTTTGATTCTTCTTCACCAAGTTTTTCTTCATCTAATTCAACAGGATCTGCTTCTAGCCAAATAAAGAACACTACGACAAATTTTAGTGAGAAATTCGAGGAATATTGAAGGTAGTAAATGGGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E235666" ref_strand="+" ref_description="SGN-E235666 [cLED-15-B21]">
      <seq>taaaagtctccaagttttggtttttaaactcctcaaagttcttctattcgatcaataaagtacgttgcaggtactaatatacattcccaattccggagatacattgagtcaaatcgaagaaacatcgttctcttcctcttctttctgtcttttttattttaaaaatggagaagcttatcaatccttacgataaggaatacatgaagatggcgatgttaaagcatgaagagatcttcagagaacaggtgtacgaactgcatcgtctatatcaaacacagaaattgctgatgagaaacatgtcaagtagtactaataatcggcctcaacaagatcatcatcaagtagtggtaaaccaattagactcgaacaaaaagataactgctcgtcaatgtattgacttggaaataaggccaaatacagacgaagaacacattgcagaatcaggtggtgaagatgatactcatgaattggaattaacattagggctatcaagttacaacgttcgtcgaaggagaaaaacagctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="68631" stop="70627"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68931" g_stop="69000" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69001" i_stop="69790" i_length="790">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69791" g_stop="69965" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="245" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69966" i_stop="70047" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70048" g_stop="70327" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="525" r_length="280" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E235666" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235666" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68931" e_stop="69000"/>
          <exon e_start="69791" e_stop="69965"/>
          <exon e_start="70048" e_stop="70327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAGTCTCCAAGTTTTGGTTTTTAAACTCCTCAAAGTTCTTCTATTCGATCAATAAAGTACGTTGCAGGTAAGGACGCTGAATTCAATCATAAAAAAATATGTATTTTTTCTTGCTCTTTCTTTCTTTCTTTGGTACTCTATAATTTAAGTTCATTTTTATAATTTACATGAACATTATTGTTGCATGCTTAGCGTCGATCAACGACAAAAATAATCAAAAATATCCATCTGATCATCAATTAATAGCTAGCAAATTTCTTTGATACACGGAATGGAATTATATGTTTTCTAATTACCTATCTAATGAAAACTAAAAATATCGAAAACGTATTAACAAAAAAAAAGAAGTGAGAAAAGCATGTGGCATGCCGTAAACTGGTAACAGAGAATAGTTTAATTTGTCGAAAAATATCTGTATTTTTTTTAGGATATATGAATTAACTTGATTTTACAAGAATATTACTACTGTTGTTATGATGGTGATATATATATATATATGTTGATCATGTCTTGCTTTATAATAGGACATATATAGATGATTTATGTATATAATGCTGTTGTTATTATTATTGGTGTGGCCCAAATTGACAGTAATTTGTATGGAAAAGAACGAACAATAAAAACAAACAAAATCACACATGCCAAAATAGGGGTACTGCGTTAATCTCCTTCAGTCATAAAAAAGTTGTGCAATAAATTGGGAAGCTTGATATTTTCTTAGATCATAGCCTTTAACGTCTATCAACTTCTTTTCTATTATTATTATTATTATTACAACAATTAAATAGCTACTATTTCTTTATTCATTTTTCAATTTTTTTTTAAAAAAAAACTTACTTGATTTCTGCTTCTTTTAGGTACTAATATACATTCCCAATTCCGGAGATACATTGAGTCAAATCGAAGAAACATCGTTCTCTTCCTCTTCTTTCTGTCTTTTTTATTTTAAAAATGGAGAAGCTTATCAATCCTTACGATAAGGAATACATGAAGATGGCGATGTTAAAGCATGAAGAGATCTTCAGAGAACAGGTAAATTTATATTATGTTTCGTTCTGAATCAACTGACTCTAGATTTTATTTATTAATTGCTTAACGACATGTGTTTTGTCAGGTGTACGAACTGCATCGTCTATATCAAACACAGAAATTGCTGATGAGAAACATGTCAAGTAGTACTAATAATCGGCCTCAACAAGATCATCATCAAGTAGTGGTAAACCAATTAGACTCGAACAAAAAGATAACTGCTCGTCAATGTATTGACTTGGAAATAAGGCCAAATACAGACGAAGAACACATTGCAGAATCAGGTGGTGAAGATGATACTCATGAATTGGAATTAACATTAGGGCTATCAAGTTACAACGTTCGTCGAAGGAGAAAAACAGCTC</genome_strand>
        <mrna_strand>TAAAAGTCTCCAAGTTTTGGTTTTTAAACTCCTCAAAGTTCTTCTATTCGATCAATAAAGTACGTTGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTAATATACATTCCCAATTCCGGAGATACATTGAGTCAAATCGAAGAAACATCGTTCTCTTCCTCTTCTTTCTGTCTTTTTTATTTTAAAAATGGAGAAGCTTATCAATCCTTACGATAAGGAATACATGAAGATGGCGATGTTAAAGCATGAAGAGATCTTCAGAGAACAG..................................................................................GTGTACGAACTGCATCGTCTATATCAAACACAGAAATTGCTGATGAGAAACATGTCAAGTAGTACTAATAATCGGCCTCAACAAGATCATCATCAAGTAGTGGTAAACCAATTAGACTCGAACAAAAAGATAACTGCTCGTCAATGTATTGACTTGGAAATAAGGCCAAATACAGACGAAGAACACATTGCAGAATCAGGTGGTGAAGATGATACTCATGAATTGGAATTAACATTAGGGCTATCAAGTTACAACGTTCGTCGAAGGAGAAAAACAGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E302968" ref_strand="+" ref_description="SGN-E302968 [cLEW-26-B24]">
      <seq>tcgatcaacgacaaaaataatcaaaaatatccatctgatcatcaattaatagctagcaaatttctttgatacacggaatggaattatatgttttctaattacctatctaatgaaaactaaaaatatcgaaaacgtattaacaaaaaaaaagaagtgagaaaagcatgtggcatgccgtaaactggtactaatatacattcccaattccggagatacattgagtcaaatcgaagaaacatcgttctcttcctcttctttctgtcttttttattttaaaaatggagaagcttatcaatccttacgataaggaatacatgaagatggcgatgttaaagcatgaagagatcttcagagaacaggtgtacgaactgcatcgtctatatcaaacacagaaattgctgatgagaaacatgtcaagtagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="68828" stop="70411"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69128" g_stop="69311" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69312" i_stop="69790" i_length="479">
            <donor d_prob="0.538" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69791" g_stop="69965" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="359" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69966" i_stop="70047" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70048" g_stop="70111" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="423" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E302968" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302968" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69128" e_stop="69311"/>
          <exon e_start="69791" e_stop="69965"/>
          <exon e_start="70048" e_stop="70111"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATCAACGACAAAAATAATCAAAAATATCCATCTGATCATCAATTAATAGCTAGCAAATTTCTTTGATACACGGAATGGAATTATATGTTTTCTAATTACCTATCTAATGAAAACTAAAAATATCGAAAACGTATTAACAAAAAAAAAGAAGTGAGAAAAGCATGTGGCATGCCGTAAACTGGTAACAGAGAATAGTTTAATTTGTCGAAAAATATCTGTATTTTTTTTAGGATATATGAATTAACTTGATTTTACAAGAATATTACTACTGTTGTTATGATGGTGATATATATATATATATGTTGATCATGTCTTGCTTTATAATAGGACATATATAGATGATTTATGTATATAATGCTGTTGTTATTATTATTGGTGTGGCCCAAATTGACAGTAATTTGTATGGAAAAGAACGAACAATAAAAACAAACAAAATCACACATGCCAAAATAGGGGTACTGCGTTAATCTCCTTCAGTCATAAAAAAGTTGTGCAATAAATTGGGAAGCTTGATATTTTCTTAGATCATAGCCTTTAACGTCTATCAACTTCTTTTCTATTATTATTATTATTATTACAACAATTAAATAGCTACTATTTCTTTATTCATTTTTCAATTTTTTTTTAAAAAAAAACTTACTTGATTTCTGCTTCTTTTAGGTACTAATATACATTCCCAATTCCGGAGATACATTGAGTCAAATCGAAGAAACATCGTTCTCTTCCTCTTCTTTCTGTCTTTTTTATTTTAAAAATGGAGAAGCTTATCAATCCTTACGATAAGGAATACATGAAGATGGCGATGTTAAAGCATGAAGAGATCTTCAGAGAACAGGTAAATTTATATTATGTTTCGTTCTGAATCAACTGACTCTAGATTTTATTTATTAATTGCTTAACGACATGTGTTTTGTCAGGTGTACGAACTGCATCGTCTATATCAAACACAGAAATTGCTGATGAGAAACATGTCAAGTAGTA</genome_strand>
        <mrna_strand>TCGATCAACGACAAAAATAATCAAAAATATCCATCTGATCATCAATTAATAGCTAGCAAATTTCTTTGATACACGGAATGGAATTATATGTTTTCTAATTACCTATCTAATGAAAACTAAAAATATCGAAAACGTATTAACAAAAAAAAAGAAGTGAGAAAAGCATGTGGCATGCCGTAAACTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTAATATACATTCCCAATTCCGGAGATACATTGAGTCAAATCGAAGAAACATCGTTCTCTTCCTCTTCTTTCTGTCTTTTTTATTTTAAAAATGGAGAAGCTTATCAATCCTTACGATAAGGAATACATGAAGATGGCGATGTTAAAGCATGAAGAGATCTTCAGAGAACAG..................................................................................GTGTACGAACTGCATCGTCTATATCAAACACAGAAATTGCTGATGAGAAACATGTCAAGTAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E389557" ref_strand="+" ref_description="SGN-E389557 [TUS-4-G19](-)">
      <seq>caaacacagaaattgctgatgagaaacatgtcaagtagtactaataatcggcctcaacaagatcatcatcaagtagtggtaaaccaattagactcgaacaaaaagataactgctcgtcaatgtattgacttggaaataaggccaaatacagacgaagaacacattgcagaatcaggtggtgaagatgatactcatgaattggaattaacattagggctatcaagttacaacgttcgtcgaaggagaaaaacagctcattttgattcttcttcaccaagtttttcttcatctaattcaacaggatctgcttctagccaaataaagaacactacgacaaatttagtgagaaattcgaggaatattgaaggtagtaaatggggacttgaagagaaattgccagtttcgaataattttcagattggtgcaagaagttcacaaagtaatcaaaatgttgatcaagagcaatatagatcacaagattcgttgaataatcctccttggctttttcaagttttgagtttgaatatgacgtaaaaaaaaaaagtactattatttaattatgatgctgatcgatgattaattagtcgatcggatgtgataagattttagactttcatcctaccgatcgactagatatgtaatttaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="69772" stop="71019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70072" g_stop="70719" g_length="648"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E389557" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389557" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70072" e_stop="70719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACACAGAAATTGCTGATGAGAAACATGTCAAGTAGTACTAATAATCGGCCTCAACAAGATCATCATCAAGTAGTGGTAAACCAATTAGACTCGAACAAAAAGATAACTGCTCGTCAATGTATTGACTTGGAAATAAGGCCAAATACAGACGAAGAACACATTGCAGAATCAGGTGGTGAAGATGATACTCATGAATTGGAATTAACATTAGGGCTATCAAGTTACAACGTTCGTCGAAGGAGAAAAACAGCTCATTTTGATTCTTCTTCACCAAGTTTTTCTTCATCTAATTCAACAGGATCTGCTTCTAGCCAAATAAAGAACACTACGACAAATTTAGTGAGAAATTCGAGGAATATTGAAGGTAGTAAATGGGGACTTGAAGAGAAATTGCCAGTTTCGAATAATTTTCAGATTGGTGCAAGAAGTTCACAAAGTAATCAAAATGTTGATCAAGAGCAATATAGATCACAAGATTCGTTGAATAATCCTCCTTGGCTTTTTCAAGTTTTGAGTTTGAATATGACGT-AAAAAAAAAACTACTATTATTTAATTATGATGCTGATCGATGATTAATTAGTCGATCGGATGTGATAAGATTTTAGACTTTCATCCTACCGATCGACTACTTATGTAATTTAATTT</genome_strand>
        <mrna_strand>CAAACACAGAAATTGCTGATGAGAAACATGTCAAGTAGTACTAATAATCGGCCTCAACAAGATCATCATCAAGTAGTGGTAAACCAATTAGACTCGAACAAAAAGATAACTGCTCGTCAATGTATTGACTTGGAAATAAGGCCAAATACAGACGAAGAACACATTGCAGAATCAGGTGGTGAAGATGATACTCATGAATTGGAATTAACATTAGGGCTATCAAGTTACAACGTTCGTCGAAGGAGAAAAACAGCTCATTTTGATTCTTCTTCACCAAGTTTTTCTTCATCTAATTCAACAGGATCTGCTTCTAGCCAAATAAAGAACACTACGACAAATTTAGTGAGAAATTCGAGGAATATTGAAGGTAGTAAATGGGGACTTGAAGAGAAATTGCCAGTTTCGAATAATTTTCAGATTGGTGCAAGAAGTTCACAAAGTAATCAAAATGTTGATCAAGAGCAATATAGATCACAAGATTCGTTGAATAATCCTCCTTGGCTTTTTCAAGTTTTGAGTTTGAATATGACGTAAAAAAAAAAAGTACTATTATTTAATTATGATGCTGATCGATGATTAATTAGTCGATCGGATGTGATAAGATTTTAGACTTTCATCCTACCGATCGACTAGATATGTAATTTAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E368724" ref_strand="+" ref_description="SGN-E368724 [TUS-22-H10](-)">
      <seq>aagatcatcatcaagtagtggtaaaccaattagactcgaacaaaaaagataactgctcgtcaatgtattgacttggaaataaggccaaatacagacgaagaacacattgcagaatcaggtggtgaaaatgatactcatgaattggaattaacattagggctatcaagttacaacgttcgtcgaaggagaaaaacagctcattttgattcttcttcaccaagtttttcttcatctaattcaacaggatctgcttctagccaaataaagaacactacgacaaatttagtgagaaattcgaggaatattgaaggtagtaaatggggacttgaagagaaattgccagtttcgaataattttcagattggtgcaaaaagttcacaaagtaatcaaaatgttgatcaagagcaatatagatcacaagattcgttgaataatcctccttggctttttcaagttttgagtttgaatatgacgtaaaaaaaaaactactattatttaattatgatgctgatcgatgattaattagtcgatcggatgtgataagattttagactttcatcctaccgatcgactacttatgtaatttaattttgtgtgaaattttagtatcatcttttgtttaattctaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="69830" stop="71057"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70130" g_stop="70756" g_length="627"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="628" r_length="628" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="629" polyA_stop="653"/>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E368724" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368724" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70130" e_stop="70756"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATCATCATCAAGTAGTGGTAAACCAATTAGACTCGAAC-AAAAAGATAACTGCTCGTCAATGTATTGACTTGGAAATAAGGCCAAATACAGACGAAGAACACATTGCAGAATCAGGTGGTGAAGATGATACTCATGAATTGGAATTAACATTAGGGCTATCAAGTTACAACGTTCGTCGAAGGAGAAAAACAGCTCATTTTGATTCTTCTTCACCAAGTTTTTCTTCATCTAATTCAACAGGATCTGCTTCTAGCCAAATAAAGAACACTACGACAAATTTAGTGAGAAATTCGAGGAATATTGAAGGTAGTAAATGGGGACTTGAAGAGAAATTGCCAGTTTCGAATAATTTTCAGATTGGTGCAAGAAGTTCACAAAGTAATCAAAATGTTGATCAAGAGCAATATAGATCACAAGATTCGTTGAATAATCCTCCTTGGCTTTTTCAAGTTTTGAGTTTGAATATGACGTAAAAAAAAAACTACTATTATTTAATTATGATGCTGATCGATGATTAATTAGTCGATCGGATGTGATAAGATTTTAGACTTTCATCCTACCGATCGACTACTTATGTAATTTAATTTTGTGTGAAATTTTAGTATCATCTTTTGTTTAATTCTA</genome_strand>
        <mrna_strand>AAGATCATCATCAAGTAGTGGTAAACCAATTAGACTCGAACAAAAAAGATAACTGCTCGTCAATGTATTGACTTGGAAATAAGGCCAAATACAGACGAAGAACACATTGCAGAATCAGGTGGTGAAAATGATACTCATGAATTGGAATTAACATTAGGGCTATCAAGTTACAACGTTCGTCGAAGGAGAAAAACAGCTCATTTTGATTCTTCTTCACCAAGTTTTTCTTCATCTAATTCAACAGGATCTGCTTCTAGCCAAATAAAGAACACTACGACAAATTTAGTGAGAAATTCGAGGAATATTGAAGGTAGTAAATGGGGACTTGAAGAGAAATTGCCAGTTTCGAATAATTTTCAGATTGGTGCAAAAAGTTCACAAAGTAATCAAAATGTTGATCAAGAGCAATATAGATCACAAGATTCGTTGAATAATCCTCCTTGGCTTTTTCAAGTTTTGAGTTTGAATATGACGTAAAAAAAAAACTACTATTATTTAATTATGATGCTGATCGATGATTAATTAGTCGATCGGATGTGATAAGATTTTAGACTTTCATCCTACCGATCGACTACTTATGTAATTTAATTTTGTGTGAAATTTTAGTATCATCTTTTGTTTAATTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E546422" ref_strand="+" ref_description="SGN-E546422 [TUS-69-M12](-)">
      <seq>gtaacccatttagattcaaacaaaaagataactgctcgtcaatgtattgacttggaaataaggccaaatacagacgaagagcacattgcagaatcaggtggtgaagatgatactcatgaattggaattaccattagggctatcaagttacaacgttcgtcgaaggagaaaaacagctcattttgattcttcttcaccaagtttttcttcatctaattcaacaggatctgcttctagccaaataaagaatactccaacaaatttagtgagaaattccaggattattgaaggtagtaaatggggatttgaagagaaattgccagtttcgaataattttcagattggtgcaagaagttcccagagtaatcaaaatgttgatcaagagcaatatagatcccaagattcgttgaataatcctccttggctttttcaagttttgagtttgaatatgacgtgaaaaactactattatttaattatgatgctgatcgatgattaattagtcgatcggatgtgataagattttagactttcatcctcccgatcgactacttatgtaatttaatttgtgtgaaattttagtaggatcttttgtttaattctgatctctttgttttaatttgctaacggtattttcgggattcaacagcccaaatatagttgatttggataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="69850" stop="71122"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70150" g_stop="70821" g_length="672"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="669" r_length="669" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="670" polyA_stop="703"/>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E546422" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E546422" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70150" e_stop="70821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAACCAATTAGACTCGAACAAAAAGATAACTGCTCGTCAATGTATTGACTTGGAAATAAGGCCAAATACAGACGAAGAACACATTGCAGAATCAGGTGGTGAAGATGATACTCATGAATTGGAATTAACATTAGGGCTATCAAGTTACAACGTTCGTCGAAGGAGAAAAACAGCTCATTTTGATTCTTCTTCACCAAGTTTTTCTTCATCTAATTCAACAGGATCTGCTTCTAGCCAAATAAAGAACACTACGACAAATTTAGTGAGAAATTCGAGGAATATTGAAGGTAGTAAATGGGGACTTGAAGAGAAATTGCCAGTTTCGAATAATTTTCAGATTGGTGCAAGAAGTTCACAAAGTAATCAAAATGTTGATCAAGAGCAATATAGATCACAAGATTCGTTGAATAATCCTCCTTGGCTTTTTCAAGTTTTGAGTTTGAATATGACGTAAAAAAAAAACTACTATTATTTAATTATGATGCTGATCGATGATTAATTAGTCGATCGGATGTGATAAGATTTTAGACTTTCATCCTACCGATCGACTACTTATGTAATTTAATTTTGTGTGAAATTTTAGTATCATCTTTTGTTTAATTCTAATCTCTTTG-TTTAATTTGCTAACGGTATTTTCGGGATTCAACAG-CCAAATATAGTTGATTTGGAT</genome_strand>
        <mrna_strand>GTAACCCATTTAGATTCAAACAAAAAGATAACTGCTCGTCAATGTATTGACTTGGAAATAAGGCCAAATACAGACGAAGAGCACATTGCAGAATCAGGTGGTGAAGATGATACTCATGAATTGGAATTACCATTAGGGCTATCAAGTTACAACGTTCGTCGAAGGAGAAAAACAGCTCATTTTGATTCTTCTTCACCAAGTTTTTCTTCATCTAATTCAACAGGATCTGCTTCTAGCCAAATAAAGAATACTCCAACAAATTTAGTGAGAAATTCCAGGATTATTGAAGGTAGTAAATGGGGATTTGAAGAGAAATTGCCAGTTTCGAATAATTTTCAGATTGGTGCAAGAAGTTCCCAGAGTAATCAAAATGTTGATCAAGAGCAATATAGATCCCAAGATTCGTTGAATAATCCTCCTTGGCTTTTTCAAGTTTTGAGTTTGAATATGACGT----GAAAAACTACTATTATTTAATTATGATGCTGATCGATGATTAATTAGTCGATCGGATGTGATAAGATTTTAGACTTTCATCCTCCCGATCGACTACTTATGTAATTTAA-TTTGTGTGAAATTTTAGTAGGATCTTTTGTTTAATTCTGATCTCTTTGTTTTAATTTGCTAACGGTATTTTCGGGATTCAACAGCCCAAATATAGTTGATTTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E392863" ref_strand="+" ref_description="SGN-E392863 [TUS-36-D24](-)">
      <seq>aacaaaaagataactgctcgtcaaagtattgacttggaaataaggccaaataccgaggaagaaccccttgcagaatcagggggggaagatgatactcctgaattggaattaaccttaggggtatcaagttacaacgtttgtcgaaggggaaaaacagctcattttgattttttttccccaagttttttttcttttaattcaaccggatttgttttttgccaaataaagaacccttcgacaaattttgtgggaaattcggggaattttgaaggtagtaaatggggacttgaagggaaattgcccgttttgaataattttcagattggggcaagaagttcccaaagtaatcaaaatgttgatcaagggcaatatagatccccagattcgttgaataatcccccttggctttttcaagttttgggtttgaatatgacgtaaaaaaaaaaaatacttttatttaattttgatggtgatcgaggattaattagtcgatcggatgggataagattttagactttcctcctcccgatcgactacttatgtaatttaattttgtgggaaattttagtatcattttttgttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="69868" stop="71051"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70168" g_stop="70750" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="584" r_length="584" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="585" polyA_stop="631"/>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E392863" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70168" e_stop="70750"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAAAAGATAACTGCTCGTCAATGTATTGACTTGGAAATAAGGCCAAATACAGACGAAGAACACATTGCAGAATCAGGTGGTGAAGATGATACTCATGAATTGGAATTAACATTAGGGCTATCAAGTTACAACGTTCGTCGAAGGAGAAAAACAGCTCATTTTGATTCTTCTTCACCAAGTTTTTCTTCATCTAATTCAACAGGATCTGCTTCTAGCCAAATAAAGAACACTACGACAAATTTAGTGAGAAATTCGAGGAATATTGAAGGTAGTAAATGGGGACTTGAAGAGAAATTGCCAGTTTCGAATAATTTTCAGATTGGTGCAAGAAGTTCACAAAGTAATCAAAATGTTGATCAAGAGCAATATAGATCACAAGATTCGTTGAATAATCCTCCTTGGCTTTTTCAAGTTTTGAGTTTGAATATGACGT-AAAAAAAAAACTACTATTATTTAATTATGATGCTGATCGATGATTAATTAGTCGATCGGATGTGATAAGATTTTAGACTTTCATCCTACCGATCGACTACTTATGTAATTTAATTTTGTGTGAAATTTTAGTATCATCTTTTGTTTA</genome_strand>
        <mrna_strand>AACAAAAAGATAACTGCTCGTCAAAGTATTGACTTGGAAATAAGGCCAAATACCGAGGAAGAACCCCTTGCAGAATCAGGGGGGGAAGATGATACTCCTGAATTGGAATTAACCTTAGGGGTATCAAGTTACAACGTTTGTCGAAGGGGAAAAACAGCTCATTTTGATTTTTTTTCCCCAAGTTTTTTTTCTTTTAATTCAACCGGATTTGTTTTTTGCCAAATAAAGAACCCTTCGACAAATTTTGTGGGAAATTCGGGGAATTTTGAAGGTAGTAAATGGGGACTTGAAGGGAAATTGCCCGTTTTGAATAATTTTCAGATTGGGGCAAGAAGTTCCCAAAGTAATCAAAATGTTGATCAAGGGCAATATAGATCCCCAGATTCGTTGAATAATCCCCCTTGGCTTTTTCAAGTTTTGGGTTTGAATATGACGTAAAAAAAAAAAATACTTTTATTTAATTTTGATGGTGATCGAGGATTAATTAGTCGATCGGATGGGATAAGATTTTAGACTTTCCTCCTCCCGATCGACTACTTATGTAATTTAATTTTGTGGGAAATTTTAGTATCATTTTTTGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E377555" ref_strand="+" ref_description="SGN-E377555 [TUS-20-H9](-)">
      <seq>tggaaataaggccaaatacagaagaaaaacccattgcaaaatcaggtggggaaaatgatactcctgaattggaattaacattagggctatcaagttacaacgttcgtcgaaaaagaaaaacagctcattttgattttttttccccaaattttttttcatttaattcaacaggatttgcttttagccaaataaaaaaccctacgccaaatttagtgagaaattcgaggaaaatttaaggtagtaaatggggacttaaaaaaaaattgccagttttgaataattttcaaattggggcaaaaagttcccaaagtaatcaaaatgttgatcaaaaacaaaataaatcccaaaattcgttgaataatcccccctgggtttttcaagttttgagtttgaatatgacgtaaaaaaaaaaaccactattatttaattatgatgctgatcgatgattaattagtcgatcggatgtgataaaattttaaactttcatccccccgatcgactacttatgtaatttaattttgtgtgaaattttaggatcattttttgtttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="69902" stop="71049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70202" g_stop="70750" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="550" r_length="550" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="552" polyA_stop="597"/>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E377555" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377555" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70202" e_stop="70750"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAATAAGGCCAAATACAGACGAAGAACACATTGCAGAATCAGGTGGTGAAGATGATACTCATGAATTGGAATTAACATTAGGGCTATCAAGTTACAACGTTCGTCGAAGGAGAAAAACAGCTCATTTTGATTCTTCTTCACCAAGTTTTTCTTCATCTAATTCAACAGGATCTGCTTCTAGCCAAATAAAGAACACTACGACAAATTTAGTGAGAAATTCGAGGAATATTGAAGGTAGTAAATGGGGACTTGAAGAGAAATTGCCAGTTTCGAATAATTTTCAGATTGGTGCAAGAAGTTCACAAAGTAATCAAAATGTTGATCAAGAGCAATATAGATCACAAGATTCGTTGAATAATCCTCCTTGGCTTTTTCAAGTTTTGAGTTTGAATATGACGT-AAAAAAAAAACTACTATTATTTAATTATGATGCTGATCGATGATTAATTAGTCGATCGGATGTGATAAGATTTTAGACTTTCATCCTACCGATCGACTACTTATGTAATTTAATTTTGTGTGAAATTTTAGTATCATCTTTTGTTTA</genome_strand>
        <mrna_strand>TGGAAATAAGGCCAAATACAGAAGAAAAACCCATTGCAAAATCAGGTGGGGAAAATGATACTCCTGAATTGGAATTAACATTAGGGCTATCAAGTTACAACGTTCGTCGAAAAAGAAAAACAGCTCATTTTGATTTTTTTTCCCCAAATTTTTTTTCATTTAATTCAACAGGATTTGCTTTTAGCCAAATAAAAAACCCTACGCCAAATTTAGTGAGAAATTCGAGGAAAATTTAAGGTAGTAAATGGGGACTTAAAAAAAAATTGCCAGTTTTGAATAATTTTCAAATTGGGGCAAAAAGTTCCCAAAGTAATCAAAATGTTGATCAAAAACAAAATAAATCCCAAAATTCGTTGAATAATCCCCCCTGGGTTTTTCAAGTTTTGAGTTTGAATATGACGTAAAAAAAAAAACCACTATTATTTAATTATGATGCTGATCGATGATTAATTAGTCGATCGGATGTGATAAAATTTTAAACTTTCATCCCCCCGATCGACTACTTATGTAATTTAATTTTGTGTGAAATTTTAGGATCATTTTTTGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E406019" ref_strand="-" ref_description="SGN-E406019 [PPI-2-M16]">
      <seq>ttatcttgctgaagtcattccagagcaagaaagaatcactgaagatgggatgtacagggccattgacatttatttaaggcacatccagctctaagcgacatggaaaggaaaaaggtttgcggtgttatggactgtcaaaagctctctcgagaagcttgtgctcatgctgctcagaatgataggctccctgttcagacagttgtgcaagtactttactatgagcagcaacgtcttcgcaatgtcatggacgggagccatcttgtagcaaccaaacctcctgttcttgtcccttccaaaatgaatcatcagttctctactgacccaatttcagacgaggtctcgagtctaaaactagaaaatcaggagctgaaatttgagctgttgaaaatgaagacgaggttgatggaaattgaaaaaccgaattcaaacagataagttacaagcagccctttggtcatcactcatccatctgctggtaaacctcctttgccaagaaaatctaacttcatgagctcagtctcgaaaaagctcgaagatttattcgagctgattgactcacgcaaggcaaaactcgaaataaaccaagtagagatagacgtcatttcatatcatgatttgagctagctatatttgtattattgtctaaatatggtacgtactggattcaaaatttagttttaaatttaatcgtgcaagtttatatggtaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="75656" stop="73085"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75355" g_stop="75277" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75276" i_stop="73973" i_length="1304">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73972" g_stop="73386" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="673" r_length="595" r_score="0.898"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="707" polyA_stop="731"/>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E406019" ref_strand="-">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="0.911" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E406019" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="75355" e_stop="75277"/>
          <exon e_start="73972" e_stop="73386"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCTTGCTGAAGTCATTCCAGAGCAAGAAAGGATCACTGAAGATGGGATGTACAGTGCCATTGACATTTATTTTAAGGTATGTACAATGAAATTACCTGATTAATTCTAAGTTTATATGTGCATATTTACCCATACAAGCCGCATTTTCATTGATTTAGAATTTTAAGCCATGTTTAGTAATGGAAAAAAACTTCCTGACTGCTACATGGTAATTGCTATGCTAAATTTAATTATCTTGATCAGATAATTTCCTTAGCAGTGCACCTTCTGGTGCTAGCATGATAGTATCCCTTTATTAGGGAAATGCATCTGGACCTCTGAAGCTTTTGATGTTCTAGTAGACTATGTAAAGGGATATTTATACCCTTCTGTGTTTTCTTATCACTGGAGTTATGGGCCTAATTTAGACTGGTAAACTTTTTGGGAATAAACAAAATCAGACAATATGTCATCAACGAAAAACCGGTCATCTTTACAATCTTAAACTCTCCAAAGACACAATTTGCAGGCATTTCTCGACCAGCCTTATCCTACTTCATCCTTAACAATCTTAGCTCCCCAAAGATCATGGGTCATTTCTTCTGCCTGCAGAGGATCATCTCTACAGTATGGCGGCGGCTTGTTTTGTCCTGTATGTTGCAGGCTTTGTTATGCGTGTATTTATACTTGAGGTCTTTTTCTATCATTTCAAATCAGAATGTTAACTAGGGAGAAATAACTTCCAAAAGAATTGGCATGCCTATACTTGTTTAGTTATGTTCTATGCACCAGCAAATAAAAACTAATCTTTGTATAAGCATGGTATATAAGAATTGGCATGCCTATATATTGAGTATAAAAACTAGTCTTAGTTCTATGCACTGAGTTCAACTGACGGATGTTATGAAACTAAAATCCATACATGTATTTCATATATGGTATCTCACCCTAAAGAGACTCTTGTATATGTGCTCATAGATGTGCAACCTGCACCTCCCCTGTTACTCTATCTAAAGATAAGGGTGGACTCAATACGTTTTTCAGTGCAGAAGCTCCAAATCTTCTTCCTGCTGAGTTACATAATAACAAGATACAAACCATATACCGTATTTGACGACCTTCACACATCATGTTGTCAGTACAACAAATATATTCTTAAGTAATGAGTTGAACCTGATCAGAAGGTTTAAGCTTTTTAAGATACAGAACAAAAAGCGCAGAACTCTTAAACCAAGCTAACATGATTTTCTAATTGTTGAATTGTGTGACCGTCTTAATTCTTAAGTAAAAATTTGAACTACTAGAGAGTACATGAGCACTCTTTTATTTGCTTAATTATGTCTTTAATACATCAATTGATCTAGGGAGACGTGTTAAATATGTTTTTGTTGGAATTTGAAGGCACATCCAGATCTAAGCGACATGGAAAGAAAAAAGGTTTGCGGTGTTATAGACTGTCAAAAGCTTTCTCGAGAAGCTTGTGCTCATGCTGCTCAAAATGATAGGCTTCCTGTTCAGACAGTTGTGCAAGTACTTTACTACGAGCAACAATGTCTTCATAATGCCATGGATGGGAGCCAGCTTGTAGCAACCAAACCTCCTGCCCTTGTCTCTTCCAAGATGAATCATCAGTTCTCTGCTGACCC----T-----GAGGACTCGAGTCTAAAACGAGAAAATCAGGAGCTGAAATTTGAGCTTCTGAAAATGAAGATGAGGTTGATGGAAATTGAAAAACCGAATTCAAACAGATCAGTTACAAGCAGCCCTTTGGTCATCACTCATCCATCTGCTGGTAAACCACCTTTGCCAAGTAACTCTAACTTCATGAGCTCAGTCTCGAAAAAGCTCAGAATA-TTAGTCGAGCTGATGGACTCACGCAAGGCAAAACTCGAAATAAACCAAAGTAAAGATAGACGTCATTCCATATCGTGATTTGAGCTAGCTATATTTGTATTATTGTCTAAATATGGTACGGACTTGATTCCAAATCT</genome_strand>
        <mrna_strand>TTATCTTGCTGAAGTCATTCCAGAGCAAGAAAGAATCACTGAAGATGGGATGTACAGGGCCATTGACATTTA-TTTAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACATCCAGCTCTAAGCGACATGGAAAGGAAAAAGGTTTGCGGTGTTATGGACTGTCAAAAGCTCTCTCGAGAAGCTTGTGCTCATGCTGCTCAGAATGATAGGCTCCCTGTTCAGACAGTTGTGCAAGTACTTTACTATGAGCAGCAACGTCTTCGCAATGTCATGGACGGGAGCCATCTTGTAGCAACCAAACCTCCTGTTCTTGTCCCTTCCAAAATGAATCATCAGTTCTCTACTGACCCAATTTCAGACGAGGTCTCGAGTCTAAAACTAGAAAATCAGGAGCTGAAATTTGAGCTGTTGAAAATGAAGACGAGGTTGATGGAAATTGAAAAACCGAATTCAAACAGATAAGTTACAAGCAGCCCTTTGGTCATCACTCATCCATCTGCTGGTAAACCTCCTTTGCCAAGAAAATCTAACTTCATGAGCTCAGTCTCGAAAAAGCTC-GAAGATTTATTCGAGCTGATTGACTCACGCAAGGCAAAACTCGAAATAAACC-AAGTAGAGATAGACGTCATTTCATATCATGATTTGAGCTAGCTATATTTGTATTATTGTCTAAATATGGTACGTACTGGATTCAAAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E428986" ref_strand="-" ref_description="SGN-E428986 [STM-51-A18]">
      <seq>tcattaatctgctgaaagtcattccagagcaagaaagaatcactgaagatgggatgtacagggccattgacatttattttaaggcacatccagctctaagcgacatggaaaggaaaaaggtttgcggtgttatggactgtcaaaagctctctcgagaagcttgtgctcatgcggctcagaatgataggctccctgttcagacagttgtgcaagtactttactatgagcagcaacgtcttcgcaatgtcatggatgggagccatcttgtagcaaccaaacctcctgctcttgtcccttccaaaatgaatcatcagttctctactgaccccatttcagacgaggtctcgagtctaaaacgagaaaatcaggagctgaaatttgagctgttgaaaatgaagacgaggttgatggaaattgaaaaaccgaattcaaacagatcagttacaagcagccctttggtcatcactcatccatctgctggtaaacctcctttgccaagaaaatctaacttcatgagctcagtctcgaaaaagctcggaagatttattcgagctgatggactcacgcaggcaaaactcgaaataaaccaagcaaagatagacgtcattccatatcatgatttgagctagctatatttgtattattgtctaaatatggtacggtactgcattcaaaatttaattttaaatttaatgatgcaagtttatatggtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="75659" stop="73085"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75359" g_stop="75277" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75276" i_stop="73973" i_length="1304">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73972" g_stop="73402" g_length="571"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="662" r_length="579" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="713" polyA_stop="724"/>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E428986" ref_strand="-">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="0.903" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E428986" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="75359" e_stop="75277"/>
          <exon e_start="73972" e_stop="73402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTAATCTTGCTG-AAGTCATTCCAGAGCAAGAAAGGATCACTGAAGATGGGATGTACAGTGCCATTGACATTTATTTTAAGGTATGTACAATGAAATTACCTGATTAATTCTAAGTTTATATGTGCATATTTACCCATACAAGCCGCATTTTCATTGATTTAGAATTTTAAGCCATGTTTAGTAATGGAAAAAAACTTCCTGACTGCTACATGGTAATTGCTATGCTAAATTTAATTATCTTGATCAGATAATTTCCTTAGCAGTGCACCTTCTGGTGCTAGCATGATAGTATCCCTTTATTAGGGAAATGCATCTGGACCTCTGAAGCTTTTGATGTTCTAGTAGACTATGTAAAGGGATATTTATACCCTTCTGTGTTTTCTTATCACTGGAGTTATGGGCCTAATTTAGACTGGTAAACTTTTTGGGAATAAACAAAATCAGACAATATGTCATCAACGAAAAACCGGTCATCTTTACAATCTTAAACTCTCCAAAGACACAATTTGCAGGCATTTCTCGACCAGCCTTATCCTACTTCATCCTTAACAATCTTAGCTCCCCAAAGATCATGGGTCATTTCTTCTGCCTGCAGAGGATCATCTCTACAGTATGGCGGCGGCTTGTTTTGTCCTGTATGTTGCAGGCTTTGTTATGCGTGTATTTATACTTGAGGTCTTTTTCTATCATTTCAAATCAGAATGTTAACTAGGGAGAAATAACTTCCAAAAGAATTGGCATGCCTATACTTGTTTAGTTATGTTCTATGCACCAGCAAATAAAAACTAATCTTTGTATAAGCATGGTATATAAGAATTGGCATGCCTATATATTGAGTATAAAAACTAGTCTTAGTTCTATGCACTGAGTTCAACTGACGGATGTTATGAAACTAAAATCCATACATGTATTTCATATATGGTATCTCACCCTAAAGAGACTCTTGTATATGTGCTCATAGATGTGCAACCTGCACCTCCCCTGTTACTCTATCTAAAGATAAGGGTGGACTCAATACGTTTTTCAGTGCAGAAGCTCCAAATCTTCTTCCTGCTGAGTTACATAATAACAAGATACAAACCATATACCGTATTTGACGACCTTCACACATCATGTTGTCAGTACAACAAATATATTCTTAAGTAATGAGTTGAACCTGATCAGAAGGTTTAAGCTTTTTAAGATACAGAACAAAAAGCGCAGAACTCTTAAACCAAGCTAACATGATTTTCTAATTGTTGAATTGTGTGACCGTCTTAATTCTTAAGTAAAAATTTGAACTACTAGAGAGTACATGAGCACTCTTTTATTTGCTTAATTATGTCTTTAATACATCAATTGATCTAGGGAGACGTGTTAAATATGTTTTTGTTGGAATTTGAAGGCACATCCAGATCTAAGCGACATGGAAAGAAAAAAGGTTTGCGGTGTTATAGACTGTCAAAAGCTTTCTCGAGAAGCTTGTGCTCATGCTGCTCAAAATGATAGGCTTCCTGTTCAGACAGTTGTGCAAGTACTTTACTACGAGCAACAATGTCTTCATAATGCCATGGATGGGAGCCAGCTTGTAGCAACCAAACCTCCTGCCCTTGTCTCTTCCAAGATGAATCATCAGTTCTCTGCTGA-CCC---T-----GAGGACTCGAGTCTAAAACGAGAAAATCAGGAGCTGAAATTTGAGCTTCTGAAAATGAAGATGAGGTTGATGGAAATTGAAAAACCGAATTCAAACAGATCAGTTACAAGCAGCCCTTTGGTCATCACTCATCCATCTGCTGGTAAACCACCTTTGCCAAGTAACTCTAACTTCATGAGCTCAGTCTCGAAAAAGCTCAGAATA-TTAGTCGAGCTGATGGACTCACGCAAGGCAAAACTCGAAATAAACCAAAGTAAAGATAGACGTCATTCCATATCGTGATTTGAGCTAGCTATATTTGTATTATTGTCTAAATATGGTACGG</genome_strand>
        <mrna_strand>TCATTAATC-TGCTGAAAGTCATTCCAGAGCAAGAAAGAATCACTGAAGATGGGATGTACAGGGCCATTGACATTTATTTTAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACATCCAGCTCTAAGCGACATGGAAAGGAAAAAGGTTTGCGGTGTTATGGACTGTCAAAAGCTCTCTCGAGAAGCTTGTGCTCATGCGGCTCAGAATGATAGGCTCCCTGTTCAGACAGTTGTGCAAGTACTTTACTATGAGCAGCAACGTCTTCGCAATGTCATGGATGGGAGCCATCTTGTAGCAACCAAACCTCCTGCTCTTGTCCCTTCCAAAATGAATCATCAGTTCTCTACTGACCCCATTTCAGACGAGGTCTCGAGTCTAAAACGAGAAAATCAGGAGCTGAAATTTGAGCTGTTGAAAATGAAGACGAGGTTGATGGAAATTGAAAAACCGAATTCAAACAGATCAGTTACAAGCAGCCCTTTGGTCATCACTCATCCATCTGCTGGTAAACCTCCTTTGCCAAGAAAATCTAACTTCATGAGCTCAGTCTCGAAAAAGCTCGGAAGATTTATTCGAGCTGATGGACTCACGC-AGGCAAAACTCGAAATAAACC-AAGCAAAGATAGACGTCATTCCATATCATGATTTGAGCTAGCTATATTTGTATTATTGTCTAAATATGGTACGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E478194" ref_strand="+" ref_description="SGN-E478194 [cSTD-3-H5]">
      <seq>gttaattccttcatattccttccaggggacactttgtttgatgttgaaaccatgcagcgtattatgatgaatttccttgaccctgatatggaggaaaatcgattgggagatgaagaatataatgagtctcattcattaagagacatggagcaggttgggaaacttatggaaaattaccttgctgaaatagcttctgaccgtaatctatccatcacaagcttcattaatcttgctgaagtcattccagagcaagaaagaatcactgaagatgggatgtacagggccattgacatttattttaaggcacatccagctctaagcgacatggaaaggaaaaaggtttgcggtgttatggactgtcaaaagctctctcgagaagcttgtgctcatgcggctcagaatgataggctccctgttcagacagttgtgcaagtactttactatgagcagcaacgtcttcgcaatgtcatggatgggagccatcttgtagcaaccaaacctcctgctcttgtcccttccaaaatgaatcatcagttctctactgaccccatttcagacgaggtctcgagtctaaaacgagaaaatcaggagctgaaatttgagctgttgaaaatgaagacgaggttgatggaaattgaaaaaccgaattcaacagatcagttacaagcagccctttggtcatcactcatccatctgctggtaaacctnctttgccaagaaaatctaacttcatgagctcagtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="75855" stop="73240"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75579" g_stop="75277" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75276" i_stop="73973" i_length="1304">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73972" g_stop="73540" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="744" r_length="441" r_score="0.896"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E478194" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E478194" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75579" e_stop="75277"/>
          <exon e_start="73972" e_stop="73540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAATTCCTTCATATTCCTTCAGAGGGGACACTTTGTTTGATGTTGAAATCATGCAGCTTATTGTGATGAATTTCCTTGCCTATGATATGGAGGAAAATC-ATTGGGAGATGAAGAGTATAATGAGTCTCATTCATTAAGAGACATGGAGCGAGTTGGGGAACTTATGGAAAATTACCTTGCTAAAATAGCTTCTGACCGTAATCTATCCATCACAAGCTTCATTAATCTTGCTGAAGTCATTCCAGAGCAAGAAAGGATCACTGAAGATGGGATGTACAGTGCCATTGACATTTATTTTAAGGTATGTACAATGAAATTACCTGATTAATTCTAAGTTTATATGTGCATATTTACCCATACAAGCCGCATTTTCATTGATTTAGAATTTTAAGCCATGTTTAGTAATGGAAAAAAACTTCCTGACTGCTACATGGTAATTGCTATGCTAAATTTAATTATCTTGATCAGATAATTTCCTTAGCAGTGCACCTTCTGGTGCTAGCATGATAGTATCCCTTTATTAGGGAAATGCATCTGGACCTCTGAAGCTTTTGATGTTCTAGTAGACTATGTAAAGGGATATTTATACCCTTCTGTGTTTTCTTATCACTGGAGTTATGGGCCTAATTTAGACTGGTAAACTTTTTGGGAATAAACAAAATCAGACAATATGTCATCAACGAAAAACCGGTCATCTTTACAATCTTAAACTCTCCAAAGACACAATTTGCAGGCATTTCTCGACCAGCCTTATCCTACTTCATCCTTAACAATCTTAGCTCCCCAAAGATCATGGGTCATTTCTTCTGCCTGCAGAGGATCATCTCTACAGTATGGCGGCGGCTTGTTTTGTCCTGTATGTTGCAGGCTTTGTTATGCGTGTATTTATACTTGAGGTCTTTTTCTATCATTTCAAATCAGAATGTTAACTAGGGAGAAATAACTTCCAAAAGAATTGGCATGCCTATACTTGTTTAGTTATGTTCTATGCACCAGCAAATAAAAACTAATCTTTGTATAAGCATGGTATATAAGAATTGGCATGCCTATATATTGAGTATAAAAACTAGTCTTAGTTCTATGCACTGAGTTCAACTGACGGATGTTATGAAACTAAAATCCATACATGTATTTCATATATGGTATCTCACCCTAAAGAGACTCTTGTATATGTGCTCATAGATGTGCAACCTGCACCTCCCCTGTTACTCTATCTAAAGATAAGGGTGGACTCAATACGTTTTTCAGTGCAGAAGCTCCAAATCTTCTTCCTGCTGAGTTACATAATAACAAGATACAAACCATATACCGTATTTGACGACCTTCACACATCATGTTGTCAGTACAACAAATATATTCTTAAGTAATGAGTTGAACCTGATCAGAAGGTTTAAGCTTTTTAAGATACAGAACAAAAAGCGCAGAACTCTTAAACCAAGCTAACATGATTTTCTAATTGTTGAATTGTGTGACCGTCTTAATTCTTAAGTAAAAATTTGAACTACTAGAGAGTACATGAGCACTCTTTTATTTGCTTAATTATGTCTTTAATACATCAATTGATCTAGGGAGACGTGTTAAATATGTTTTTGTTGGAATTTGAAGGCACATCCAGATCTAAGCGACATGGAAAGAAAAAAGGTTTGCGGTGTTATAGACTGTCAAAAGCTTTCTCGAGAAGCTTGTGCTCATGCTGCTCAAAATGATAGGCTTCCTGTTCAGACAGTTGTGCAAGTACTTTACTACGAGCAACAATGTCTTCATAATGCCATGGATGGGAGCCAGCTTGTAGCAACCAAACCTCCTGCCCTTGTCTCTTCCAAGATGAATCATCAGTTCTCTGCTGA-CCC---T-----GAGGACTCGAGTCTAAAACGAGAAAATCAGGAGCTGAAATTTGAGCTTCTGAAAATGAAGATGAGGTTGATGGAAATTGAAAAACCGAATTCAAACAGATCAGTTACAAGCAGCCCTTTGGTCATCACTCATCCATCTGCTGGTAAACCACCTTTGCCAAGTAACTCTAACTTCATGAGCTCAGTCT</genome_strand>
        <mrna_strand>GTTAATTCCTTCATATTCCTTC-CAGGGGACACTTTGTTTGATGTTGAAACCATGCAGCGTATTATGATGAATTTCCTTGACCCTGATATGGAGGAAAATCGATTGGGAGATGAAGAATATAATGAGTCTCATTCATTAAGAGACATGGAGCAGGTTGGGAAACTTATGGAAAATTACCTTGCTGAAATAGCTTCTGACCGTAATCTATCCATCACAAGCTTCATTAATCTTGCTGAAGTCATTCCAGAGCAAGAAAGAATCACTGAAGATGGGATGTACAGGGCCATTGACATTTATTTTAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACATCCAGCTCTAAGCGACATGGAAAGGAAAAAGGTTTGCGGTGTTATGGACTGTCAAAAGCTCTCTCGAGAAGCTTGTGCTCATGCGGCTCAGAATGATAGGCTCCCTGTTCAGACAGTTGTGCAAGTACTTTACTATGAGCAGCAACGTCTTCGCAATGTCATGGATGGGAGCCATCTTGTAGCAACCAAACCTCCTGCTCTTGTCCCTTCCAAAATGAATCATCAGTTCTCTACTGACCCCATTTCAGACGAGGTCTCGAGTCTAAAACGAGAAAATCAGGAGCTGAAATTTGAGCTGTTGAAAATGAAGACGAGGTTGATGGAAATTGAAAAACCGAATTC-AACAGATCAGTTACAAGCAGCCCTTTGGTCATCACTCATCCATCTGCTGGTAAACCTNCTTTGCCAAGAAAATCTAACTTCATGAGCTCAGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E275552" ref_strand="+" ref_description="SGN-E275552 [cLEN-10-B21]">
      <seq>aggatttaaccgtccttagaattgattttttccaaagggttctgattgcaatgatgggaaggggattcaagcagtatgcacttggaccaatattaatgctctatgcacagaagtctcttcgttgtttggaaatatttggaaagggaaggaaaaagattgaaccaaaacaagaacatgaaaaaagggttgttgtataaaccatcgttggtcttctgccaagggagaaaaatgcattatccgttagcttttgtcaatgcttctccgagctgcaatatatctgcagaccacgatggctggcaggctcgacttggagaagaggatggattgcagcttggacaggctgtattggatgtatctgataattccttcatattccttcagaggggacactttgtttgatgttgaaatcatgcagcttattgcgatgaatttccttgcctatgatatggaggaaaatcattgggagatgaagagtataatgagtctcattcattaagagacatggagcgagttggggaacttatggaaaattaccttgctaaaatagcttctgaccgtaatctatccatcacaagcttcattaatcttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="76317" stop="75045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76017" g_stop="75890" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75889" i_stop="75809" i_length="81">
            <donor d_prob="0.753" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75808" g_stop="75345" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="592" r_length="464" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E275552" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275552" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76017" e_stop="75890"/>
          <exon e_start="75808" e_stop="75345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGATTTAACCGTCCTTAGAATTGATTTTTTCCAAAGGGTTCTGATTGCAATGATGGGAAGGGGATTCAAGCAGTATGCACTTGGACCAATATTAATGCTCTATGCACAGAAGTCTCTTCGTTGTTTGGTGAGGCCTTGTACTATAAAATCTTGATGAATTGGTTAAATTGAAATCTTTGTGCATATAGTAACTTTTTGTTTATAACAGGAAATATTTGGAAAGGGAAGGAAAAAGATTGAACCAAAACAAGAACATGAAAAAAGGGTTGTTGTAGAAACCATCGTTGGTCTTCTGCCAAGGGAGAAAAATGCATTATCCGTTAGCTTTTGTCAATGCTTCTCCGAGCTGCAATATATCTGCAGACCACGATGGCTGGCAGGCTCGACTTGGAGAAGAGGATGGATTGCAGCTTGGACAGGCTGTATTGGATGTATCTGTTAATTCCTTCATATTCCTTCAGAGGGGACACTTTGTTTGATGTTGAAATCATGCAGCTTATTGTGATGAATTTCCTTGCCTATGATATGGAGGAAAATCATTGGGAGATGAAGAGTATAATGAGTCTCATTCATTAAGAGACATGGAGCGAGTTGGGGAACTTATGGAAAATTACCTTGCTAAAATAGCTTCTGACCGTAATCTATCCATCACAAGCTTCATTAATCTTGCTG</genome_strand>
        <mrna_strand>AGGATTTAACCGTCCTTAGAATTGATTTTTTCCAAAGGGTTCTGATTGCAATGATGGGAAGGGGATTCAAGCAGTATGCACTTGGACCAATATTAATGCTCTATGCACAGAAGTCTCTTCGTTGTTTG.................................................................................GAAATATTTGGAAAGGGAAGGAAAAAGATTGAACCAAAACAAGAACATGAAAAAAGGGTTGTTGTATAAACCATCGTTGGTCTTCTGCCAAGGGAGAAAAATGCATTATCCGTTAGCTTTTGTCAATGCTTCTCCGAGCTGCAATATATCTGCAGACCACGATGGCTGGCAGGCTCGACTTGGAGAAGAGGATGGATTGCAGCTTGGACAGGCTGTATTGGATGTATCTGATAATTCCTTCATATTCCTTCAGAGGGGACACTTTGTTTGATGTTGAAATCATGCAGCTTATTGCGATGAATTTCCTTGCCTATGATATGGAGGAAAATCATTGGGAGATGAAGAGTATAATGAGTCTCATTCATTAAGAGACATGGAGCGAGTTGGGGAACTTATGGAAAATTACCTTGCTAAAATAGCTTCTGACCGTAATCTATCCATCACAAGCTTCATTAATCTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E322441" ref_strand="+" ref_description="SGN-E322441 [cTOB-26-G19]">
      <seq>acaattgcatatatagcctgtaaggataaccaattctccacatcaggttgagcagaagctggtatctatggattgacttcctccatgttttcgaacccgaagtctatagttaactggtggtcggaggatttaaccgtccttagaattgattttttccaaagggttctgattgcaatgatgggaaggggattcaagcagtatgcacttggaccaatattaatgctctatgcacagaagtctcttcgttgtttggaaatatttggaaagggaaggaaaaagattgaaccaaaacaagaacatgaaaaaagggttgttgtagaaaccatcgttggtcttctgccaagggagaaaaatgcattatccgttagcttttgtcaatgcttctccgagctgcaatatatctgcagaccacgatggctggcaggctcgacttggagaagaggatggattgcagcttggacaggctgtattggatgtatctgttaattccttcatattccttcagaggggacactttgtttgatgttgaaatcatgcagcttattgtgatgaatttccttgcctatgatatggacgaaaatcattgggagatgaagagtataatgagtctcattcattcagagacatgcagcgagttggggaacttatggaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="76441" stop="75107"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76141" g_stop="75890" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75889" i_stop="75809" i_length="81">
            <donor d_prob="0.753" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75808" g_stop="75407" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="654" r_length="402" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E322441" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322441" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76141" e_stop="75890"/>
          <exon e_start="75808" e_stop="75407"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATTGCATATATAGCCTGTAAGGATAACCAATTCTCCACATCAGGTTGAGCAGAAGCTGGTATCTATGGATTGACTTCCTCCATGTTTTCGAACCCGAAGTCTATAGTTAACTGGTGGTCGGAGGATTTAACCGTCCTTAGAATTGATTTTTTCCAAAGGGTTCTGATTGCAATGATGGGAAGGGGATTCAAGCAGTATGCACTTGGACCAATATTAATGCTCTATGCACAGAAGTCTCTTCGTTGTTTGGTGAGGCCTTGTACTATAAAATCTTGATGAATTGGTTAAATTGAAATCTTTGTGCATATAGTAACTTTTTGTTTATAACAGGAAATATTTGGAAAGGGAAGGAAAAAGATTGAACCAAAACAAGAACATGAAAAAAGGGTTGTTGTAGAAACCATCGTTGGTCTTCTGCCAAGGGAGAAAAATGCATTATCCGTTAGCTTTTGTCAATGCTTCTCCGAGCTGCAATATATCTGCAGACCACGATGGCTGGCAGGCTCGACTTGGAGAAGAGGATGGATTGCAGCTTGGACAGGCTGTATTGGATGTATCTGTTAATTCCTTCATATTCCTTCAGAGGGGACACTTTGTTTGATGTTGAAATCATGCAGCTTATTGTGATGAATTTCCTTGCCTATGATATGGAGGAAAATCATTGGGAGATGAAGAGTATAATGAGTCTCATTCATTAAGAGACATGGAGCGAGTTGGGGAACTTATGGAAAA</genome_strand>
        <mrna_strand>ACAATTGCATATATAGCCTGTAAGGATAACCAATTCTCCACATCAGGTTGAGCAGAAGCTGGTATCTATGGATTGACTTCCTCCATGTTTTCGAACCCGAAGTCTATAGTTAACTGGTGGTCGGAGGATTTAACCGTCCTTAGAATTGATTTTTTCCAAAGGGTTCTGATTGCAATGATGGGAAGGGGATTCAAGCAGTATGCACTTGGACCAATATTAATGCTCTATGCACAGAAGTCTCTTCGTTGTTTG.................................................................................GAAATATTTGGAAAGGGAAGGAAAAAGATTGAACCAAAACAAGAACATGAAAAAAGGGTTGTTGTAGAAACCATCGTTGGTCTTCTGCCAAGGGAGAAAAATGCATTATCCGTTAGCTTTTGTCAATGCTTCTCCGAGCTGCAATATATCTGCAGACCACGATGGCTGGCAGGCTCGACTTGGAGAAGAGGATGGATTGCAGCTTGGACAGGCTGTATTGGATGTATCTGTTAATTCCTTCATATTCCTTCAGAGGGGACACTTTGTTTGATGTTGAAATCATGCAGCTTATTGTGATGAATTTCCTTGCCTATGATATGGACGAAAATCATTGGGAGATGAAGAGTATAATGAGTCTCATTCATTCAGAGACATGCAGCGAGTTGGGGAACTTATGGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E322652" ref_strand="+" ref_description="SGN-E322652 [cTOB-26-G16]">
      <seq>acaattgcatatatagcctgtaaggataaccaattctccacatcaggttgagcagaagctggtatctatggattgacttcctccatgttttcgaacccgaagtctatagttaactggtggtcggaggatttaaccgtccttagaattgattttttccaaagggttctgattgcaatgatgggaaggggattcaagcagtatgcacttggaccaatattaatgctctatgcacagaagtctcttcgttgtttggaaatatttggaaagggaaggaaaaagattgaaccaaaacaagaacatgaaaaaagggttgttgtagaaaccatcgttggtcttctgccaagggagaaaaatgcattatccgttagcttttgtcaatgcttctccgagctgcaatatatctgcagaccacgatggctggcaggctcgacttggagaagaggatggattgcagcttggacaggctgtattggatgtatctgttaattccttcatattccttcagaggggacactttngttgatgtttgaatcatgcagcttattgtgatgaatttcctttgctatgatatggaggaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="76441" stop="75182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76141" g_stop="75890" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75889" i_stop="75809" i_length="81">
            <donor d_prob="0.753" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75808" g_stop="75481" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="580" r_length="328" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E322652" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76141" e_stop="75890"/>
          <exon e_start="75808" e_stop="75481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATTGCATATATAGCCTGTAAGGATAACCAATTCTCCACATCAGGTTGAGCAGAAGCTGGTATCTATGGATTGACTTCCTCCATGTTTTCGAACCCGAAGTCTATAGTTAACTGGTGGTCGGAGGATTTAACCGTCCTTAGAATTGATTTTTTCCAAAGGGTTCTGATTGCAATGATGGGAAGGGGATTCAAGCAGTATGCACTTGGACCAATATTAATGCTCTATGCACAGAAGTCTCTTCGTTGTTTGGTGAGGCCTTGTACTATAAAATCTTGATGAATTGGTTAAATTGAAATCTTTGTGCATATAGTAACTTTTTGTTTATAACAGGAAATATTTGGAAAGGGAAGGAAAAAGATTGAACCAAAACAAGAACATGAAAAAAGGGTTGTTGTAGAAACCATCGTTGGTCTTCTGCCAAGGGAGAAAAATGCATTATCCGTTAGCTTTTGTCAATGCTTCTCCGAGCTGCAATATATCTGCAGACCACGATGGCTGGCAGGCTCGACTTGGAGAAGAGGATGGATTGCAGCTTGGACAGGCTGTATTGGATGTATCTGTTAATTCCTTCATATTCCTTCAGAGGGGACACTTTGTTTGATGTTGAAATCATGCAGCTTATTGTGATGAATTTCCTTGCCTATGATATGGAGGAAAA</genome_strand>
        <mrna_strand>ACAATTGCATATATAGCCTGTAAGGATAACCAATTCTCCACATCAGGTTGAGCAGAAGCTGGTATCTATGGATTGACTTCCTCCATGTTTTCGAACCCGAAGTCTATAGTTAACTGGTGGTCGGAGGATTTAACCGTCCTTAGAATTGATTTTTTCCAAAGGGTTCTGATTGCAATGATGGGAAGGGGATTCAAGCAGTATGCACTTGGACCAATATTAATGCTCTATGCACAGAAGTCTCTTCGTTGTTTG.................................................................................GAAATATTTGGAAAGGGAAGGAAAAAGATTGAACCAAAACAAGAACATGAAAAAAGGGTTGTTGTAGAAACCATCGTTGGTCTTCTGCCAAGGGAGAAAAATGCATTATCCGTTAGCTTTTGTCAATGCTTCTCCGAGCTGCAATATATCTGCAGACCACGATGGCTGGCAGGCTCGACTTGGAGAAGAGGATGGATTGCAGCTTGGACAGGCTGTATTGGATGTATCTGTTAATTCCTTCATATTCCTTCAGAGGGGACACTTTNGTTGATGTTTGAATCATGCAGCTTATTGTGATGAATTTCCTTTGCTATGATATGGAGGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E204978" ref_strand="+" ref_description="SGN-E204978 [cLEC-16-I20]">
      <seq>aacattgccttgctgagatgtgcagcagaatatcttgagatgacagaagactatgcagttgcaaatttggtgggaagaactgaggactactttagtgaagtaggaattgagagccttcatagtgctgttacaattttgcattcatcagaaaatcttattcccatttcagagaaagtgaaattggtgagccgctgcattgacacaattgcatatatagcctgtaaggataaccaattctccacatcaggttgagcagaagctggtatctatggattgacttcctccatgttttcgaacccgaagtctatagttaactggtggtcggaggatttaaccgtccttagaattgattttttccaaagggttctgattgcaatgatgggaaggggattcaagcagtatgcacttggaccaatattaatgctctatgcacagaagtctcttcgttgtttggaaatatttggaaagggaaggaaaaagattgaaccaaaacaagaacatgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="76642" stop="75456"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76342" g_stop="75890" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="453" r_length="453" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75889" i_stop="75809" i_length="81">
            <donor d_prob="0.753" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75808" g_stop="75756" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="506" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E204978" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76342" e_stop="75890"/>
          <exon e_start="75808" e_stop="75756"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATTGCCTTGCTGAGATGTGCAGCAGAATATCTTGAGATGACAGAAGACTATGCAGTTGCAAATTTGGTGGGAAGAACTGAGGACTACTTTAGTGAAGTAGGAATTGAGAGCCTTCATAGTGCTGTTACAATTTTGCATTCATCAGAAAATCTTATTCCCATTTCAGAGAAAGTGAAATTGGTGAGCCGCTGCATTGACACAATTGCATATATAGCCTGTAAGGATAACCAATTCTCCACATCAGGTTGAGCAGAAGCTGGTATCTATGGATTGACTTCCTCCATGTTTTCGAACCCGAAGTCTATAGTTAACTGGTGGTCGGAGGATTTAACCGTCCTTAGAATTGATTTTTTCCAAAGGGTTCTGATTGCAATGATGGGAAGGGGATTCAAGCAGTATGCACTTGGACCAATATTAATGCTCTATGCACAGAAGTCTCTTCGTTGTTTGGTGAGGCCTTGTACTATAAAATCTTGATGAATTGGTTAAATTGAAATCTTTGTGCATATAGTAACTTTTTGTTTATAACAGGAAATATTTGGAAAGGGAAGGAAAAAGATTGAACCAAAACAAGAACATGAAAA</genome_strand>
        <mrna_strand>AACATTGCCTTGCTGAGATGTGCAGCAGAATATCTTGAGATGACAGAAGACTATGCAGTTGCAAATTTGGTGGGAAGAACTGAGGACTACTTTAGTGAAGTAGGAATTGAGAGCCTTCATAGTGCTGTTACAATTTTGCATTCATCAGAAAATCTTATTCCCATTTCAGAGAAAGTGAAATTGGTGAGCCGCTGCATTGACACAATTGCATATATAGCCTGTAAGGATAACCAATTCTCCACATCAGGTTGAGCAGAAGCTGGTATCTATGGATTGACTTCCTCCATGTTTTCGAACCCGAAGTCTATAGTTAACTGGTGGTCGGAGGATTTAACCGTCCTTAGAATTGATTTTTTCCAAAGGGTTCTGATTGCAATGATGGGAAGGGGATTCAAGCAGTATGCACTTGGACCAATATTAATGCTCTATGCACAGAAGTCTCTTCGTTGTTTG.................................................................................GAAATATTTGGAAAGGGAAGGAAAAAGATTGAACCAAAACAAGAACATGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E276458" ref_strand="+" ref_description="SGN-E276458 [cLEN-17-B12]">
      <seq>caggaatctcctttacactacacaagttcccattagtttcaaagagtggataccataaggaagttggtctcggaatccaatgatgctgacgtttctacgatcgaaatccctgatatacctggtggaggagaggcatttgaatttgcagcaaagttttgttatggaataaattttgagataagcacaagaaacattgccttgctgagatgtgcagcagaatatcttgagatgacagaagactatgcagttgcaaatttggtgggaagaactgaggactactttagtgaagtaggaattgagagccttcatagtgctgttacaattttgcattcatcagaaaatcttattcccatttcagagaaagtgaaattggtgagccgctgcattgacacaattgcatatatagcctgtaaggataaccaattctccacatcaggttgagcagaagctggtatctatggattgacttcctccatgttttcgaacccgaagtctatagttaactggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="77209" stop="75724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76909" g_stop="76884" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76883" i_stop="76505" i_length="379">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.965" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76504" g_stop="76024" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="508" r_length="482" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E276458" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76909" e_stop="76884"/>
          <exon e_start="76504" e_stop="76024"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGAATCTCCTTTACACTACACAAGGTGCGTTATTTTTCTCTGCTTTCGTCATTAAGTCAACTGAACTTGGTGCACAATCCGAACTGTTGTTGGTTTTAGTTAAATTCCTAATTGGATTAGAATTATCGTCCCTTGGTCACATCTTACAACAGCAATAACAAAGTCAGTGTAATCCCAATATATATAGTGGGGTCTTGGGAGGGTGCGCAGCCTTACCCCTAACTTTATGGGATAGAGATGTTGTTTACGATTGACCACGGGCAACCTCCTCCTTTATCCGATGTTGGGACTGACAATGTGAACGAGCTCACACAGGCGGAGTTAGGCCTTGTTCACGCCTTGATTTTCATCTTTGATGATTGAATCAGTAGGTTTAATAGTGTATTAACTCTGCTGCTTGCAGTTCCCATTAGTTTCAAAGAGTGGATA-CATAAGGAAGTTGGTCTCGGAATCCAATGATGCTGACGTTTCTACGATCGAAATCCCTGATATACCTGGTGGAGGAGAGGCATTTGAATTTGCAGCAAAGTTTTGTTATGGAATAAATTTTGAGATAAGCACAAGAAACATTGCCTTGCTGAGATGTGCAGCAGAATATCTTGAGATGACAGAAGACTATGCAGTTGCAAATTTGGTGGGAAGAACTGAGGACTACTTTAGTGAAGTAGGAATTGAGAGCCTTCATAGTGCTGTTACAATTTTGCATTCATCAGAAAATCTTATTCCCATTTCAGAGAAAGTGAAATTGGTGAGCCGCTGCATTGACACAATTGCATATATAGCCTGTAAGGATAACCAATTCTCCACATCAGGTTGAGCAGAAGCTGGTATCTATGGATTGACTTCCTCCATGTTTTCGAACCCGAAGTCTATAGTTAACTGGT</genome_strand>
        <mrna_strand>CAGGAATCTCCTTTACACTACACAAG...........................................................................................................................................................................................................................................................................................................................................................................................TTCCCATTAGTTTCAAAGAGTGGATACCATAAGGAAGTTGGTCTCGGAATCCAATGATGCTGACGTTTCTACGATCGAAATCCCTGATATACCTGGTGGAGGAGAGGCATTTGAATTTGCAGCAAAGTTTTGTTATGGAATAAATTTTGAGATAAGCACAAGAAACATTGCCTTGCTGAGATGTGCAGCAGAATATCTTGAGATGACAGAAGACTATGCAGTTGCAAATTTGGTGGGAAGAACTGAGGACTACTTTAGTGAAGTAGGAATTGAGAGCCTTCATAGTGCTGTTACAATTTTGCATTCATCAGAAAATCTTATTCCCATTTCAGAGAAAGTGAAATTGGTGAGCCGCTGCATTGACACAATTGCATATATAGCCTGTAAGGATAACCAATTCTCCACATCAGGTTGAGCAGAAGCTGGTATCTATGGATTGACTTCCTCCATGTTTTCGAACCCGAAGTCTATAGTTAACTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E208806" ref_strand="+" ref_description="SGN-E208806 [cLEC-51-H20]">
      <seq>gaacttacagaagcaaagaaaatggcaacaaacatgtctttctattgtttgcttcattaggaaatagtttaagggaaaacgaatgaacatggttaaggcccgtaaaagactcgatcacccatggtggatgacatgttgatcttgataatgaacaaccttctactctaaacagtatgtccactaaaaaggagcttcttttctctgctacaaagaggacctctcaatggattttctcccaggagatcccaagtgatgtgactgtaaatgccgcaggaatctcctttacactacacaagttcccattagtttcaaagagtggatacataaggaagttggtctcggaatccaatgatgctgacgtttctacgatcgaaatccctgatatacctggtggaggagaggcatttgaatttgcagcaaagttttgttatggaataaattttgagataagcacaagaaacattgccttgctgagatgtgcagcagaatatcttgagatgacagaagactatgcagttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="77598" stop="75981"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77298" g_stop="77073" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77072" i_stop="76954" i_length="119">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76953" g_stop="76884" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="296" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76883" i_stop="76505" i_length="379">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76504" g_stop="76281" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="520" r_length="224" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E208806" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77298" e_stop="77073"/>
          <exon e_start="76953" e_stop="76884"/>
          <exon e_start="76504" e_stop="76281"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTTACAGAAGCAAAGAAAATGGCAACAAACATGTCTTTCTATTGTTTGCTTCATTAGGAAATAGTTTAAGGGAAAACGAATGAACATGGTTAAGGCCCGTAAAAGACTCGATCACCCATGGTGGATGACATGTTGATCTTGATAATGAACAACCTTCTACTCTAAACAGTATGTCCACTAAAAAGGAGCTTCTTTTCTCTGCTACAAAGAGGACCTCTCAATGGTATGTGCTATTTTTGACTTCTTTATTTTCTACTTTCAAAAAGTAGCCTCTTCCATATATTATAGAATCATTACTCTGTTTTTCAAATTATTCGCCTAAATAATAATCTATCTTAACAGGATTTTCTCCCAGGAGATCCCAAGTGATGTGACTGTAAATGCCGCAGGAATCTCCTTTACACTACACAAGGTGCGTTATTTTTCTCTGCTTTCGTCATTAAGTCAACTGAACTTGGTGCACAATCCGAACTGTTGTTGGTTTTAGTTAAATTCCTAATTGGATTAGAATTATCGTCCCTTGGTCACATCTTACAACAGCAATAACAAAGTCAGTGTAATCCCAATATATATAGTGGGGTCTTGGGAGGGTGCGCAGCCTTACCCCTAACTTTATGGGATAGAGATGTTGTTTACGATTGACCACGGGCAACCTCCTCCTTTATCCGATGTTGGGACTGACAATGTGAACGAGCTCACACAGGCGGAGTTAGGCCTTGTTCACGCCTTGATTTTCATCTTTGATGATTGAATCAGTAGGTTTAATAGTGTATTAACTCTGCTGCTTGCAGTTCCCATTAGTTTCAAAGAGTGGATACATAAGGAAGTTGGTCTCGGAATCCAATGATGCTGACGTTTCTACGATCGAAATCCCTGATATACCTGGTGGAGGAGAGGCATTTGAATTTGCAGCAAAGTTTTGTTATGGAATAAATTTTGAGATAAGCACAAGAAACATTGCCTTGCTGAGATGTGCAGCAGAATATCTTGAGATGACAGAAGACTATGCAGTTGC</genome_strand>
        <mrna_strand>GAACTTACAGAAGCAAAGAAAATGGCAACAAACATGTCTTTCTATTGTTTGCTTCATTAGGAAATAGTTTAAGGGAAAACGAATGAACATGGTTAAGGCCCGTAAAAGACTCGATCACCCATGGTGGATGACATGTTGATCTTGATAATGAACAACCTTCTACTCTAAACAGTATGTCCACTAAAAAGGAGCTTCTTTTCTCTGCTACAAAGAGGACCTCTCAATG.......................................................................................................................GATTTTCTCCCAGGAGATCCCAAGTGATGTGACTGTAAATGCCGCAGGAATCTCCTTTACACTACACAAG...........................................................................................................................................................................................................................................................................................................................................................................................TTCCCATTAGTTTCAAAGAGTGGATACATAAGGAAGTTGGTCTCGGAATCCAATGATGCTGACGTTTCTACGATCGAAATCCCTGATATACCTGGTGGAGGAGAGGCATTTGAATTTGCAGCAAAGTTTTGTTATGGAATAAATTTTGAGATAAGCACAAGAAACATTGCCTTGCTGAGATGTGCAGCAGAATATCTTGAGATGACAGAAGACTATGCAGTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E314538" ref_strand="+" ref_description="SGN-E314538 [cTOA-20-E7]">
      <seq>ataggttttgctaattcaaccaagaaaatagtttaattatgtaggaaagatcttaatatgatgtgaaaatgacattcctggaggagcctattgacgtcctacaccagctattcattattgacaattgccgtagctatcatttgtcagacaaatttcagtggatatgctttcagtctgagactattacctagccaggtctagggtccaattaatccgtactagctttgaactaacattgcaaaacttgtcttcacccttctactggtggatttgggttatagggcaggtgcgatcacacctactttggatacaattgggaacaataacaattaaagtatcaagaaacgaaattcgatatcagctggtttgatatgtaccccgatggttttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="78440" stop="77449"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78140" g_stop="77749" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="392" r_length="392" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E314538" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78140" e_stop="77749"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGGTTTTGCTAATTCAACCAAGAAAATAGTTTAATTATGTAGGAAAGATCTTAATATGATGTGAAAATGACATTCCTGGAGGAGCCTATTGACGTCCTACACCAGCTATTCATTATTGACAATTGCCGTAGCTATCATTTGTCAGACAAATTTCAGTGGATATGCTTTCAGTCTGAGACTATTACCTAGCCAGGTCTAGGGTCCAATTAATCCGTACTAGCTTTGAACTAACATTGCAAAACTTGTCTTCACCCTTCTACTGGTGGATTTGGGTTATAGGGCAGGTGCGATCACACCTACTTTGGATACAATTGGGAACAATAACAATTAAAGTATCAAGAAACGAAATTCGATATCAGCTGGTTTGATATGTACCCCGATGGTTTTTTG</genome_strand>
        <mrna_strand>ATAGGTTTTGCTAATTCAACCAAGAAAATAGTTTAATTATGTAGGAAAGATCTTAATATGATGTGAAAATGACATTCCTGGAGGAGCCTATTGACGTCCTACACCAGCTATTCATTATTGACAATTGCCGTAGCTATCATTTGTCAGACAAATTTCAGTGGATATGCTTTCAGTCTGAGACTATTACCTAGCCAGGTCTAGGGTCCAATTAATCCGTACTAGCTTTGAACTAACATTGCAAAACTTGTCTTCACCCTTCTACTGGTGGATTTGGGTTATAGGGCAGGTGCGATCACACCTACTTTGGATACAATTGGGAACAATAACAATTAAAGTATCAAGAAACGAAATTCGATATCAGCTGGTTTGATATGTACCCCGATGGTTTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E746958" ref_strand="+" ref_description="SGN-E746958 [GI|47104324]">
      <seq>cctgtggagagtgaaaagggtcccaatagcagcatacaagagagagcaaaaagctttcccaatctatggctttttcctaaaaatggtgtgtgagtaaagtagtgttattgctctggcggttgcatcaaacagaagcggggcccaattccttcgttgcatctacccagcctgcgtcttctttgttgtcccttttccgaaatccgatacctttatcaataactcttcagtctctgatttccggataaaccatgtccaaagctcgagtatacaccgatatcaatgtgcttcgtcctagggaatattgggattacgaatcgctaactgttcaatggggtgatcaggatgactatgaggttgttcgaaaagttggaagaggaaaatacagtgaagtttttgaaggtataaatgttaacagcagggagaagtgcataatcaagatcctgaaacctgttaagaagaaaaagatcaaaagagagataaagatattgcaaaatctctgtggtggaccaaatattgtcaaactccttgatatcgtcagagatcagcattcaaaaactccaagcttgatttttgagtacgtgaacagcacagatttcaaggttttgtacccaacgctaacagactatgacatacggtactacatatatgagcttctcaaggcactagattattgccattcacagggaataatgcacagggatgtcaaacctcataacgttatgatagaccatgaactgcggaagcttcgcttgatagattggggtcttgccgaattttaccacccagggaaggaatataatgttcgtgtggcttcaagatacttcaagggccctgaacttctagttgacttgcaagactatgactattctttggacatgtggagccttggctgcatgtttgcaggaatgattttccgcaaggaacctttcttttatggccatgataatcaggatcagctcgtcaaaattgcaaaggtacttgggacagatgagttgaatgcgtacttgcacaagtatcaactagagcttgatcctcagctagaggctatggttgggagacacagtaggaagccgtggtccaaatttattaatgcagacaatcagcatctagtgtcaccggaggctatagattatcttgacaagcttctccgttacgatcatcagactagacttacggcaaaagaagcaatggcccatccatatttcgggcaagtgagggctgctgaaactagcagaatgaggacacagtagctttcttgtcttgctgttaatgggaagaaaaaactgtgtaatgtaccttgtgtatccatttaagtgacattcgtgagaactatgtggatttgaacttgagcagacatctgaattcaggaattacagatcttcatcattgaacatttcaagagaaatagtgttttttagatttcctgatcgtgaccttgattgcaaatggaagtgacttgctgggcgtcaaaagtcaccccacccccccttccccaaagatactatctccctagatgtgaacaaaagcagatttttgaaaattagttcactttgtatattaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="84766" stop="92151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85066" g_stop="85399" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85400" i_stop="86575" i_length="1176">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86576" g_stop="86705" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="464" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86706" i_stop="87264" i_length="559">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.273" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87265" g_stop="87459" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="659" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87460" i_stop="88939" i_length="1480">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88940" g_stop="89097" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="660" r_stop="817" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89098" i_stop="89943" i_length="846">
            <donor d_prob="0.568" d_score="1.00"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89944" g_stop="90034" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="818" r_stop="908" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90035" i_stop="90220" i_length="186">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="90221" g_stop="90286" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="909" r_stop="974" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="90287" i_stop="90476" i_length="190">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="90477" g_stop="90559" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="975" r_stop="1057" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="90560" i_stop="90747" i_length="188">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="90748" g_stop="90811" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1058" r_stop="1121" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="90812" i_stop="90946" i_length="135">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="90947" g_stop="91015" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1122" r_stop="1190" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="91016" i_stop="91479" i_length="464">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="91480" g_stop="91851" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1191" r_stop="1560" r_length="370" r_score="0.995"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="91852" i_stop="91928" i_length="77">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.625" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="91929" g_stop="91942" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1561" r_stop="1574" r_length="14" r_score="0.643"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E746958" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1576</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746958" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85066" e_stop="85399"/>
          <exon e_start="86576" e_stop="86705"/>
          <exon e_start="87265" e_stop="87459"/>
          <exon e_start="88940" e_stop="89097"/>
          <exon e_start="89944" e_stop="90034"/>
          <exon e_start="90221" e_stop="90286"/>
          <exon e_start="90477" e_stop="90559"/>
          <exon e_start="90748" e_stop="90811"/>
          <exon e_start="90947" e_stop="91015"/>
          <exon e_start="91480" e_stop="91851"/>
          <exon e_start="91929" e_stop="91942"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGTGGAGAGTGAAAAGGGTCCCAATAGCAGCATACAAGAGAGAGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGGGTAAATATTTTCCCTTATTTAACCCTAATCGCTTTTGATTTTGTTTTTAGTTTTGGGGGTTTGTATACTGGATAATAGATTGAAATTCTTGAATTAGATGCTGTTTATTACCTTTTTTTAAAAAGATTGTTTGGTAAAATAATAACATCCACTTCTAGCATCCAAGAAAATAGTTTTTGCTTATGTTTCCTTGTTTTTTCCGTCTGAAGTAAAAAGTGGGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGGTATGTTTCCTTGTTTTTTTCGTCTGAAAGAAAAGTGGGTGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGTTATGTTTCCTTTTTTAAAGATAAGTGGAGGTTACATAGCATTGTAACATCCACTCCAGGGGTGGGTGAAACCTGAAAACAAATGTTGGGTTTCTTATTCCTATTTTTTGTCTAATAGATAATTGTGTGATCAGTGTTAGATGCTATTTTGGCGAATTCCTGCTATCTTGAATGGAATGACTTTCACATTGGAAAATACCTATTGGGTTAATGCAAAACTCCTGTCTAGTCTTGTTGAACTGAGTCTGTATTTTGTGGCTCCAGATTAGGTTGGGCTTCAAGTCTTTATATGTTTGTTACTTCTATATTAGCTTCCACATGATACAATGGAAGCTAAATAACAAATATAATATACCAATTAGTTGAGTTATATACCAATTTGTTGAGTTTAAGGATTGGTCCTGCTGGTGCACATTTGGACTGAAGTAAATGTTTGTGTAAGTCTTGTAATAAGAGTGAGATTTACAACCCGTTGTGTTAAAAGTTGAATTATTGAATACTTGAATGGAACAGCCCCGAAGTGGAGTGGATAATTATAGAGGCTTCATTTAGTTGACACCAGTTAGTTTATTTTTGTTATTGTATAGTTCTGCTGCATTTATCAAGATGAGAGCATTTTGTGTAACAAGAACTATATAAATGTCTTGCTAAAGTGGGAGAATATAGTTTGTTAATCTTGGTTCTAGAGTACCTTGACCCTTGGCTCAACGATTAGTTTTATCTTACACAAGTATTGGTTTCAGATATGATTCTATTTGACTTACTCAACTTTAATGCACCAGCTACATTGTATTATCCTCACTAGTGCATGTCATATTTATTATTGTAGTGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAGGTATGACGTTTTTTGGCTGAATTAAGATTTCATTTTTCTGCTTCAAAAGGAAAAAAAATGAAGAAGTTTGCAGGAAGAGTTCTTCTGTAATGCAATACTTATTTTTTGTCTGACTTAATATCTATGGATAATCTTCAACATTAATGGAAGAATCTGTATCTAACTCATATAAAGGGGCTTAGTATCTATTGAGAATCATCAACATCGACAGGCTTAATGGAAAAATCTGTATTTAACTCATGAAAAAGACTACTCTCAATTATCTATCCATGTGGTTGATAGGGTGTCAAAGAAATAAGTGAAGTTTCTTTTTTGGAACTTTGGAAAAAATTCAGTTATGTTGTACGAAATGCATAATGCCTAGGTTCATCTCTTGATGACATTTTTTGATCGTTTTGGTAGTGTTATGCATCCACTGTTCATACACCTTTTGTCCTCCTATCCTTTCTTTAACTTAATTTTTAAATTAACACTGTTTTAGTTTGTAATATTGTGCTTTATACGGAAAAAAAGAAAAGAATATACATGCTTTTGACTTGACATTAGCGGTATCGTGTAGATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAGGTAAGATGATAAACACATCAGATGGCAGTCAATATGGCTTTTATGTATTCATGCTCCCTCTCCCCTGATTCTTTTTTTTTTTTTTAAGGAAGGTAACAGTTATATACTTCCTGTCCTCTTGGTCCTCCTTTTCTGTATCTTCTTTCTTCTCTCAGAACCAAGAATAGAGTTGTACTGATGTCTTAACTTACTATCTGGTCAAAACTTTGTTTGTCTCCAACATTTCCTTCTATTGCAGCTTTTCAAGGTTTGTATGAGTATGAGAATTTTGGGAGTCCCCAGTTTTCTTATGCTCAGCAACTATTTCTGAATTGAGTGGATATATTCTCATATACTATGATCAAATTATGAGATCAAACTATCAAAGTTATAACTCCTAGGCTCATCTCAAGTGGAAATTTTGGAATCCAAGATTCTGGTGCCATAAAACTGCACTAATTTGGATTCATCTTATATCTATATTTAGATAATTGGGAGTCTGTCGAATGTGTCTCGTGATCTTGGGTTAGTGGGAATGACTAAGACTGTAAACTCATATTTGTTCACCTTATCCTGCCTGCCAATACATGGATTTCAAATCCATCATCAAAAATGTAGATTTTTCTTATTGATATTGTCAGCTCATTCACTGTCTTGGTCATTCCAATTGATTACCTTTCCTCTGCAATTCGGTCTAAGTATAGCTTCTGAATGTGTTTTTTACAAGGTAAATGACCTCATAGTGAGGTGCTTACCATGTCTCTTGTTATCAGATGATATGAATTAGATTCACTGCATGCCTATTGGAAGTTGATTTTATATCTAGATTAATGGCTATGCTCGTTGTTACTCTTAACAATGTGACATTTTTTTTCTGACTTTGGATTTCTTAAGTAACTCTCTTGTATTCTTCTGATCTTATAATTGGTTAAGGAAAAAAAATTCACCAATGCCATGGATATTCTCTCCTCTGTTTGCTAATTGCTATTTAAATTTCATTTTCCTTTTTCACGAGTAATATTATATTCCCTTTTTGTCTGATTTGCGTGAGAGTAACTATTTGGAAATGGGGATGCTAATTATTGGATCCTGTTGATTTCTATCTCGAAGTTAGTTCTTCCTTTTTGCTACATGCCTACATCACCAGCCTACCTGATCATATGTCTAGGTTTCCTTTCTTTTGCCTCCTCCTGCGAAAAAAAGAAAAGAAATTTAACTTCTCAAGCTTTCTCATTGTGTATCAGCATAATTGTTTGTCAAATGCTAGATCTGTTCCTGCATACTTACTTTCCATTCGCTTAATTTACTCTATTAATTTCCCCTTCTTTTTTGAAAGAAAAGAAAGAATCACGTTTTTGGCATGACTGCTGAATTTGCTGAGGCCTTCATTTCTTGTGACAGTTGTTTAATAGACTCTTTGGGACCTATTCTTTGTGTACATTTCTTGACATGCTTACCAATTTATGGAGGTCGAAAACTGAAACTTCTTATCAACCTGCAGGCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCCGAATTTTACCACCCAGGGAAGGAATATAATGTTCGTGTGGCTTCAAGGTGAGATAATCTGCCGACAGTATGGCTGGACCGGCATAGTTGCTTTGCCAGCAACAACTTCCTACATATAGCATTGCTATTTGTAGATCCATGCTCTACTTGCAAATTATTCTCTGGACAAGTCATGAGTTTTTAATCAGAAAGCAAGTGACATTGTTATATATTTTTTAAGTCAGAAATAATAAAAGGAACATCATTCACTTACATATACAACAACTACCCGTCAGTTCCAAACTAGTCGGGGTCGTTATATGATTTTTGCTGTCCATGTTACTCCATTTAATCCCATATCTTGCGGACTTGTAAAGTTTAGAATCTCTATATTTTCTTAACTGACAAACTTCTGAAAAGCTAAAACACTCCTAGAAAGTATAGGACCTACAGGAAAATTCTAATATATTAATATATTCTCGACTAATATGTAGCATATATATAGAATTTTTTCTTCCATTGTGCCTTTCGTAAGTTCACATGGATCCTTAAAATTATAGGTCCTTAAAGACAACTTCCTTCCATGTGATTTTAGGTCTACTTCGTTTTTTAACAGCTCCACTCACCATAGTTTCACACTCAGGAGTCAGTGCATCAGGAGGGGTTAATGCAAGACATAATCAAATCATCTCAAGGAACAGCTGAGTTCTTAAAGAATACTTAAAACAATACCCATTAAAGAATACTTAAAACAATCAATGGGATTATAGGAAAAGGTTAGGAATTGTTTATGTAAAACTAATTCTGTATCAGCATAGCTGCATATGGGAAATTGGTTTTGTACCGTAAGTTAGTGGTTCATAAACTATCAATGCTATTGAAGCAAGTCTGAGTTCTTCTTTTCTTGCACTTCAGATACTTCAAGGGCCCTGAACTTCTAGTTGACTTGCAAGACTATGACTATTCTTTGGACATGTGGAGCCTTGGCTGCATGTTTGCAGGAATGGTGAGAAATTCTATGATTCATAATATAAGCTGTCAGTTGGTTTATAGTTTTATGCTATCAGTTGTGGGCCTGGGAAACTACAAACATCCGAAAGGACTTGTTAGAAGTTTGTATTTTGCTTATTTGAAATCAATTTTCCTTTTCCTCCTGTTTTCTTTGTGTCTGACCATACCTTTTCCTTGGTAGATTTTCCGCAAGGAACCTTTCTTTTATGGCCATGATAATCAGGATCAGCTCGTCAAAATTGCAAAGGTAATGCGTAGTAACTGACCAGTGACCAATGGGTTTATATACCTTAATTTTGTTGTTTGAGTGAGAGGGGGGAAGTTGATCATCTGAAAACAACCAAAGAAGTTGTTACTTCAGTTGCAAGTGAACACTCAATTTATAGAAGTAAAGCATAACTGCTTGACATGGAGTTGATAGATTATTGTTGTTATAGGTACTTGGGACAGATGAGTTGAATGCGTACTTGCACAAGTATCAACTAGAGCTTGATCCTCAGCTAGAGGCTATGGTTGGGAGGTATGCTTCTTGCTTTATCGCCAAGATAAAACTACGCTAAGGCAATTTGCAAAATAACTTAGAGCTGTGACTAAATAGGGTTACCAAGTTGATCTTAGCAACTAGCTTTAGCAGATGTGTGTCCTCTCTCATTAATTGCCAAAATTCTTAGCTATTGAAGGTGAATACAATCTGTCTTTCCCCTGCAGACACAGTAGGAAGCCGTGGTCCAAATTTATTAATGCAGACAATCAGCATCTAGTGTCACCGGAGGTACTCTTCTCTCTCTATTTATGTATCTATGGTATTTCTGAATAAGACGAAACCAGCAATGGTGACAAGTACATCTCAACCAATTGGCTGTTCTTCACTACCCACTTGATAATTGATTTTGGCTTCTCATTGCAGGCTATAGATTATCTTGACAAGCTTCTCCGTTACGATCATCAGACTAGACTTACGGCAAAAGAAGCAATGGTAATCCTCTTTATCCACTATTAATGAGCTTTAAACTCTGAGCCTCATCATTTTCTTCTCAGCTTCTGTCTTATATTGGTTTACTATTGCTTATTAAAGAAAATGGTTTCGTGACATTTTAAAACACATACTTTACCAAAACCAAAATGTAAGGTTATAAATAAATGAGATCAGTGAGGATGAGTGGGTGAAGAGACGCAACTTGACTAGTTTTTTGTTTTGAAATTCTGTTAGAAACAAGCTGGTGATTGTGAAGTGTCAGTGCTTTCTGTTTCTGCTCTTGGCTATGTTTTTTTCCTTTGTCATGATGTTGCATCTGCATCTTTCCTGGAATCAATCCACTCTCCCTTCTCAATTATTTCTTTTAACAACACTATACATGTATTTGTTTTGTTTTGCACAACTAGAGTATTGAACAGTGTGTTGGGAAACCTACTAACTGCTTTCTCTGCCCTGTTTCTTAGGCCCATCCATATTTCGGGCAAGTGAGGGCTGCTGAAACTAGCAGAATGAGGACACAGTAGCTTTCTTGTCTTGCTGTTAATGGGAAGAAAAAAAACTGTGTAATGTACCTTGTGTATCCATTTAAGTGACATTCGTGAGAACTATGTGGATTTGAACTTGAGCAGACATCTGAATTCAGGAATTACAGATCTTCATCATTGAACATTTCAAGAGAAATAGTGTTTTTTAGATTTCCTGATCGTGACCTTGATTGCAAATGGAAGTGACTTGCTGGGCGTCAAAAGTCACCCCACCCCCCCTTCCCCAAAGATACTATCTCCCTAGATGTGAACAAAAGCAGATTTTTGAAAATTAGTTCACTTTGTATATTAGTGCACTGGATTTTTCTGCATTCAGCTTTGGTGGTTTGTCTTTTGTGTAAGTTCATTGATATGGTGTAGGGCTATAGAAGAATGAAGAGAA</genome_strand>
        <mrna_strand>CCTGTGGAGAGTGAAAAGGGTCCCAATAGCAGCATACAAGAGAGAGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCCGAATTTTACCACCCAGGGAAGGAATATAATGTTCGTGTGGCTTCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTCAAGGGCCCTGAACTTCTAGTTGACTTGCAAGACTATGACTATTCTTTGGACATGTGGAGCCTTGGCTGCATGTTTGCAGGAATG..........................................................................................................................................................................................ATTTTCCGCAAGGAACCTTTCTTTTATGGCCATGATAATCAGGATCAGCTCGTCAAAATTGCAAAG..............................................................................................................................................................................................GTACTTGGGACAGATGAGTTGAATGCGTACTTGCACAAGTATCAACTAGAGCTTGATCCTCAGCTAGAGGCTATGGTTGGGAG............................................................................................................................................................................................ACACAGTAGGAAGCCGTGGTCCAAATTTATTAATGCAGACAATCAGCATCTAGTGTCACCGGAG.......................................................................................................................................GCTATAGATTATCTTGACAAGCTTCTCCGTTACGATCATCAGACTAGACTTACGGCAAAAGAAGCAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCATCCATATTTCGGGCAAGTGAGGGCTGCTGAAACTAGCAGAATGAGGACACAGTAGCTTTCTTGTCTTGCTGTTAATGGGAAG--AAAAAACTGTGTAATGTACCTTGTGTATCCATTTAAGTGACATTCGTGAGAACTATGTGGATTTGAACTTGAGCAGACATCTGAATTCAGGAATTACAGATCTTCATCATTGAACATTTCAAGAGAAATAGTGTTTTTTAGATTTCCTGATCGTGACCTTGATTGCAAATGGAAGTGACTTGCTGGGCGTCAAAAGTCACCCCACCCCCCCTTCCCCAAAGATACTATCTCCCTAGATGTGAACAAAAGCAGATTTTTGAAAATTAGTTCACTTTGTATATTA.............................................................................AAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E299917" ref_strand="+" ref_description="SGN-E299917 [cLEW-1-P12]">
      <seq>ctgtggagagtgaaaagggtcccaatagcagcatacaagagagagcaaaaagctttcccaatctatggctttttcctaaaaatggtgtgtgagtaaagtagtgttattgctctggcggttgcatcaaacagaagcggggcccaattccttcgttgcatctacccagcctgcgtcttctttgttgtcccttttccgaaatccgatacctttatcaataactcttcagtctctgatttccggataaaccatgtccaaagctcgagtatacaccgatatcaatgtgcttcgtcctagggaatattgggattacgaatcgctaactgttcaatggggtgatcaggatgactatgaggttgttcgaaaagttggaagaggaaaatacagtgaagtttttgaaggtataaatgttaacagcagggagaagtgcataatcaagatcctgaaacctgttaagaagaaaaagatcaaaagagagataaagatattgcaaaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="84767" stop="87596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85067" g_stop="85399" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="333" r_length="333" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85400" i_stop="86575" i_length="1176">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86576" g_stop="86705" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="463" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86706" i_stop="87264" i_length="559">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.273" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87265" g_stop="87296" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="495" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E299917" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299917" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85067" e_stop="85399"/>
          <exon e_start="86576" e_stop="86705"/>
          <exon e_start="87265" e_stop="87296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTGGAGAGTGAAAAGGGTCCCAATAGCAGCATACAAGAGAGAGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGGGTAAATATTTTCCCTTATTTAACCCTAATCGCTTTTGATTTTGTTTTTAGTTTTGGGGGTTTGTATACTGGATAATAGATTGAAATTCTTGAATTAGATGCTGTTTATTACCTTTTTTTAAAAAGATTGTTTGGTAAAATAATAACATCCACTTCTAGCATCCAAGAAAATAGTTTTTGCTTATGTTTCCTTGTTTTTTCCGTCTGAAGTAAAAAGTGGGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGGTATGTTTCCTTGTTTTTTTCGTCTGAAAGAAAAGTGGGTGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGTTATGTTTCCTTTTTTAAAGATAAGTGGAGGTTACATAGCATTGTAACATCCACTCCAGGGGTGGGTGAAACCTGAAAACAAATGTTGGGTTTCTTATTCCTATTTTTTGTCTAATAGATAATTGTGTGATCAGTGTTAGATGCTATTTTGGCGAATTCCTGCTATCTTGAATGGAATGACTTTCACATTGGAAAATACCTATTGGGTTAATGCAAAACTCCTGTCTAGTCTTGTTGAACTGAGTCTGTATTTTGTGGCTCCAGATTAGGTTGGGCTTCAAGTCTTTATATGTTTGTTACTTCTATATTAGCTTCCACATGATACAATGGAAGCTAAATAACAAATATAATATACCAATTAGTTGAGTTATATACCAATTTGTTGAGTTTAAGGATTGGTCCTGCTGGTGCACATTTGGACTGAAGTAAATGTTTGTGTAAGTCTTGTAATAAGAGTGAGATTTACAACCCGTTGTGTTAAAAGTTGAATTATTGAATACTTGAATGGAACAGCCCCGAAGTGGAGTGGATAATTATAGAGGCTTCATTTAGTTGACACCAGTTAGTTTATTTTTGTTATTGTATAGTTCTGCTGCATTTATCAAGATGAGAGCATTTTGTGTAACAAGAACTATATAAATGTCTTGCTAAAGTGGGAGAATATAGTTTGTTAATCTTGGTTCTAGAGTACCTTGACCCTTGGCTCAACGATTAGTTTTATCTTACACAAGTATTGGTTTCAGATATGATTCTATTTGACTTACTCAACTTTAATGCACCAGCTACATTGTATTATCCTCACTAGTGCATGTCATATTTATTATTGTAGTGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAGGTATGACGTTTTTTGGCTGAATTAAGATTTCATTTTTCTGCTTCAAAAGGAAAAAAAATGAAGAAGTTTGCAGGAAGAGTTCTTCTGTAATGCAATACTTATTTTTTGTCTGACTTAATATCTATGGATAATCTTCAACATTAATGGAAGAATCTGTATCTAACTCATATAAAGGGGCTTAGTATCTATTGAGAATCATCAACATCGACAGGCTTAATGGAAAAATCTGTATTTAACTCATGAAAAAGACTACTCTCAATTATCTATCCATGTGGTTGATAGGGTGTCAAAGAAATAAGTGAAGTTTCTTTTTTGGAACTTTGGAAAAAATTCAGTTATGTTGTACGAAATGCATAATGCCTAGGTTCATCTCTTGATGACATTTTTTGATCGTTTTGGTAGTGTTATGCATCCACTGTTCATACACCTTTTGTCCTCCTATCCTTTCTTTAACTTAATTTTTAAATTAACACTGTTTTAGTTTGTAATATTGTGCTTTATACGGAAAAAAAGAAAAGAATATACATGCTTTTGACTTGACATTAGCGGTATCGTGTAGATCAAAAGAGAGATAAAGATATTGCAAAATCT</genome_strand>
        <mrna_strand>CTGTGGAGAGTGAAAAGGGTCCCAATAGCAGCATACAAGAGAGAGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAAGAGAGATAAAGATATTGCAAAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E711070" ref_strand="+" ref_description="SGN-E711070 [FA57DF11]">
      <seq>agtgaaaagggtcccaatagcagcatacaagagagagcaaaaagctttcccaatctatggctttttcctaaaaatggtgtgtgagtaaagtagtgttattgctctggcggttgcatcaaacagaagcggggcccaattccttcgttgcatctacccagcctgcgtcttctttgttgtcccttttccgaaatccgatacctttatcaataactcttcagcctctgatttccggataaaccatgtccaaagctcgagtatacaccgatatcaatgtgcttcgtcctagggaatattgggattacgaatcgctaactgttcaatggggtgatcacgatgactatgacgctgttccaaaagctggaagaggaaaatacagcgaagtttttgaaggtataaatgttaacagcagggagaagtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="84775" stop="86969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85075" g_stop="85399" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85400" i_stop="86575" i_length="1176">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86576" g_stop="86669" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="419" r_length="94" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E711070" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711070" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85075" e_stop="85399"/>
          <exon e_start="86576" e_stop="86669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGAAAAGGGTCCCAATAGCAGCATACAAGAGAGAGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGGGTAAATATTTTCCCTTATTTAACCCTAATCGCTTTTGATTTTGTTTTTAGTTTTGGGGGTTTGTATACTGGATAATAGATTGAAATTCTTGAATTAGATGCTGTTTATTACCTTTTTTTAAAAAGATTGTTTGGTAAAATAATAACATCCACTTCTAGCATCCAAGAAAATAGTTTTTGCTTATGTTTCCTTGTTTTTTCCGTCTGAAGTAAAAAGTGGGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGGTATGTTTCCTTGTTTTTTTCGTCTGAAAGAAAAGTGGGTGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGTTATGTTTCCTTTTTTAAAGATAAGTGGAGGTTACATAGCATTGTAACATCCACTCCAGGGGTGGGTGAAACCTGAAAACAAATGTTGGGTTTCTTATTCCTATTTTTTGTCTAATAGATAATTGTGTGATCAGTGTTAGATGCTATTTTGGCGAATTCCTGCTATCTTGAATGGAATGACTTTCACATTGGAAAATACCTATTGGGTTAATGCAAAACTCCTGTCTAGTCTTGTTGAACTGAGTCTGTATTTTGTGGCTCCAGATTAGGTTGGGCTTCAAGTCTTTATATGTTTGTTACTTCTATATTAGCTTCCACATGATACAATGGAAGCTAAATAACAAATATAATATACCAATTAGTTGAGTTATATACCAATTTGTTGAGTTTAAGGATTGGTCCTGCTGGTGCACATTTGGACTGAAGTAAATGTTTGTGTAAGTCTTGTAATAAGAGTGAGATTTACAACCCGTTGTGTTAAAAGTTGAATTATTGAATACTTGAATGGAACAGCCCCGAAGTGGAGTGGATAATTATAGAGGCTTCATTTAGTTGACACCAGTTAGTTTATTTTTGTTATTGTATAGTTCTGCTGCATTTATCAAGATGAGAGCATTTTGTGTAACAAGAACTATATAAATGTCTTGCTAAAGTGGGAGAATATAGTTTGTTAATCTTGGTTCTAGAGTACCTTGACCCTTGGCTCAACGATTAGTTTTATCTTACACAAGTATTGGTTTCAGATATGATTCTATTTGACTTACTCAACTTTAATGCACCAGCTACATTGTATTATCCTCACTAGTGCATGTCATATTTATTATTGTAGTGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGC</genome_strand>
        <mrna_strand>AGTGAAAAGGGTCCCAATAGCAGCATACAAGAGAGAGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGCCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCACGATGACTATGACGCTGTTCCAAAAGCTGGAAGAGGAAAATACAGCGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E257497" ref_strand="+" ref_description="SGN-E257497 [cLEG-45-A9]">
      <seq>tgaaaagggtcccaatagcagcatacaagagagagcaaaaagctttcccaatctatggctttttcctaaaaatggtgtgtgagtaaagtagtgttattgctctggcggttgcatcaaacagaagcggggcccaattccttcgttgcatctacccagcctgcgtcttctttgttgtcccttttccgaaatccgatacctttatcaataactcttcagtctctgatttccggataaaccatgtccaaagctcgagtatacaccgatatcaatgtgcttcgtcctagggaatattgggattacgaatcgctaactgttcaatggggtgatcaggatgactatgaggttgttcgaaaagttggaagaggaaaatacagtgaagtttttgaaggtataaatgttaacagcagggagaagtgcataatcaagatcctgaaacctgttaagaagaaaaagatcnaaagagagataaagatattgcaaaatctctgtggtggaccaaatattgtcaaactccttgatatcgtcagagatcagcattcaaaaactccaagcttgatttttgagtacgtgaacagcacagatttcaaggttttgtacccaacgctaacagactatgacatacggtactacatatatgagcttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="84777" stop="87755"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85077" g_stop="85399" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="323" r_length="323" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85400" i_stop="86575" i_length="1176">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86576" g_stop="86705" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="453" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86706" i_stop="87264" i_length="559">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.273" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87265" g_stop="87455" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="644" r_length="191" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E257497" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85077" e_stop="85399"/>
          <exon e_start="86576" e_stop="86705"/>
          <exon e_start="87265" e_stop="87455"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAAGGGTCCCAATAGCAGCATACAAGAGAGAGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGGGTAAATATTTTCCCTTATTTAACCCTAATCGCTTTTGATTTTGTTTTTAGTTTTGGGGGTTTGTATACTGGATAATAGATTGAAATTCTTGAATTAGATGCTGTTTATTACCTTTTTTTAAAAAGATTGTTTGGTAAAATAATAACATCCACTTCTAGCATCCAAGAAAATAGTTTTTGCTTATGTTTCCTTGTTTTTTCCGTCTGAAGTAAAAAGTGGGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGGTATGTTTCCTTGTTTTTTTCGTCTGAAAGAAAAGTGGGTGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGTTATGTTTCCTTTTTTAAAGATAAGTGGAGGTTACATAGCATTGTAACATCCACTCCAGGGGTGGGTGAAACCTGAAAACAAATGTTGGGTTTCTTATTCCTATTTTTTGTCTAATAGATAATTGTGTGATCAGTGTTAGATGCTATTTTGGCGAATTCCTGCTATCTTGAATGGAATGACTTTCACATTGGAAAATACCTATTGGGTTAATGCAAAACTCCTGTCTAGTCTTGTTGAACTGAGTCTGTATTTTGTGGCTCCAGATTAGGTTGGGCTTCAAGTCTTTATATGTTTGTTACTTCTATATTAGCTTCCACATGATACAATGGAAGCTAAATAACAAATATAATATACCAATTAGTTGAGTTATATACCAATTTGTTGAGTTTAAGGATTGGTCCTGCTGGTGCACATTTGGACTGAAGTAAATGTTTGTGTAAGTCTTGTAATAAGAGTGAGATTTACAACCCGTTGTGTTAAAAGTTGAATTATTGAATACTTGAATGGAACAGCCCCGAAGTGGAGTGGATAATTATAGAGGCTTCATTTAGTTGACACCAGTTAGTTTATTTTTGTTATTGTATAGTTCTGCTGCATTTATCAAGATGAGAGCATTTTGTGTAACAAGAACTATATAAATGTCTTGCTAAAGTGGGAGAATATAGTTTGTTAATCTTGGTTCTAGAGTACCTTGACCCTTGGCTCAACGATTAGTTTTATCTTACACAAGTATTGGTTTCAGATATGATTCTATTTGACTTACTCAACTTTAATGCACCAGCTACATTGTATTATCCTCACTAGTGCATGTCATATTTATTATTGTAGTGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAGGTATGACGTTTTTTGGCTGAATTAAGATTTCATTTTTCTGCTTCAAAAGGAAAAAAAATGAAGAAGTTTGCAGGAAGAGTTCTTCTGTAATGCAATACTTATTTTTTGTCTGACTTAATATCTATGGATAATCTTCAACATTAATGGAAGAATCTGTATCTAACTCATATAAAGGGGCTTAGTATCTATTGAGAATCATCAACATCGACAGGCTTAATGGAAAAATCTGTATTTAACTCATGAAAAAGACTACTCTCAATTATCTATCCATGTGGTTGATAGGGTGTCAAAGAAATAAGTGAAGTTTCTTTTTTGGAACTTTGGAAAAAATTCAGTTATGTTGTACGAAATGCATAATGCCTAGGTTCATCTCTTGATGACATTTTTTGATCGTTTTGGTAGTGTTATGCATCCACTGTTCATACACCTTTTGTCCTCCTATCCTTTCTTTAACTTAATTTTTAAATTAACACTGTTTTAGTTTGTAATATTGTGCTTTATACGGAAAAAAAGAAAAGAATATACATGCTTTTGACTTGACATTAGCGGTATCGTGTAGATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCT</genome_strand>
        <mrna_strand>TGAAAAGGGTCCCAATAGCAGCATACAAGAGAGAGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCNAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E232914" ref_strand="+" ref_description="SGN-E232914 [cLED-8-J2]">
      <seq>tcccaatagcagcatacaagagagagcaaaaagctttcccaatctatggctttttcctaaaaatggtgtgtgagtaaagtagtgttattgctctggcggttgcatcaaacagaagcggggcccaattccttcgttgcatctacccagcctgcgtcttctttgttgtcccttttccgaaatccgatacctttatcaataactcttcagtctctgatttccggataaaccatgtccaaagctcgagtatacaccgatatcaatgtgcttcgtcctagggaatattgggattacgaatcgctaactgttcaatggggtgatcaggatgactatgaggttgttcgaaaagttggaagaggaaaatacagngaagtttttgaaggtataaatgttaacagcagggagaagtgcataatcaagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="84786" stop="86980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85086" g_stop="85399" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85400" i_stop="86575" i_length="1176">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86576" g_stop="86680" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="419" r_length="105" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E232914" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85086" e_stop="85399"/>
          <exon e_start="86576" e_stop="86680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCAATAGCAGCATACAAGAGAGAGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGGGTAAATATTTTCCCTTATTTAACCCTAATCGCTTTTGATTTTGTTTTTAGTTTTGGGGGTTTGTATACTGGATAATAGATTGAAATTCTTGAATTAGATGCTGTTTATTACCTTTTTTTAAAAAGATTGTTTGGTAAAATAATAACATCCACTTCTAGCATCCAAGAAAATAGTTTTTGCTTATGTTTCCTTGTTTTTTCCGTCTGAAGTAAAAAGTGGGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGGTATGTTTCCTTGTTTTTTTCGTCTGAAAGAAAAGTGGGTGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGTTATGTTTCCTTTTTTAAAGATAAGTGGAGGTTACATAGCATTGTAACATCCACTCCAGGGGTGGGTGAAACCTGAAAACAAATGTTGGGTTTCTTATTCCTATTTTTTGTCTAATAGATAATTGTGTGATCAGTGTTAGATGCTATTTTGGCGAATTCCTGCTATCTTGAATGGAATGACTTTCACATTGGAAAATACCTATTGGGTTAATGCAAAACTCCTGTCTAGTCTTGTTGAACTGAGTCTGTATTTTGTGGCTCCAGATTAGGTTGGGCTTCAAGTCTTTATATGTTTGTTACTTCTATATTAGCTTCCACATGATACAATGGAAGCTAAATAACAAATATAATATACCAATTAGTTGAGTTATATACCAATTTGTTGAGTTTAAGGATTGGTCCTGCTGGTGCACATTTGGACTGAAGTAAATGTTTGTGTAAGTCTTGTAATAAGAGTGAGATTTACAACCCGTTGTGTTAAAAGTTGAATTATTGAATACTTGAATGGAACAGCCCCGAAGTGGAGTGGATAATTATAGAGGCTTCATTTAGTTGACACCAGTTAGTTTATTTTTGTTATTGTATAGTTCTGCTGCATTTATCAAGATGAGAGCATTTTGTGTAACAAGAACTATATAAATGTCTTGCTAAAGTGGGAGAATATAGTTTGTTAATCTTGGTTCTAGAGTACCTTGACCCTTGGCTCAACGATTAGTTTTATCTTACACAAGTATTGGTTTCAGATATGATTCTATTTGACTTACTCAACTTTAATGCACCAGCTACATTGTATTATCCTCACTAGTGCATGTCATATTTATTATTGTAGTGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGAT</genome_strand>
        <mrna_strand>TCCCAATAGCAGCATACAAGAGAGAGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGNGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E243453" ref_strand="+" ref_description="SGN-E243453 [cLED-34-M10]">
      <seq>tcccaatagcagcatacaagagagagcaaaaagctttcccaatctatggctttttcctaaaaatggtgtgtgagtaaagtagtgttattgctctggcggttgcatcaaacagaagcggggcccaattccttcgttgcatctacccagcctgcgtcttctttgttgtcccttttccgaaatccgatacctttatcaataactcttcagtctctgatttccggataaaccatgtccaaagctcgagtatacaccgatatcaatgtgcttcgtcctagggaatattgggattacgaatcgctaactgttcaatggggtgatcaggatgacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="84786" stop="85707"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85086" g_stop="85399" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E243453" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>314</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243453" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85086" e_stop="85399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCAATAGCAGCATACAAGAGAGAGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGG</genome_strand>
        <mrna_strand>TCCCAATAGCAGCATACAAGAGAGAGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E334421" ref_strand="+" ref_description="SGN-E334421 [cTOD-23-A23]">
      <seq>aatagcagcatacaagagagagcaaaaagctttcccaatctatggctttttcctaaaaatggtgtgtgagtaaagtagtgttattgctctggcggttgcatcaaacagaagcggggcccaattccttcgttgcatctacccagcctgcgtcttctttgttgtcccttttccgaaatccgatacctttatcaataactcttcagtctctgatttccggataaaccatgtccaaagctcgagtatacaccgatatcaatgtgcttcgtcctagggaatattgggattacgaatcgctaactgttcaatgggggatgactatgaggttgttcgaaaagttggaagaggaaaatacagtgaagtttttgaaggtataaatgttaacagcagggagaagtgcataatcaagatcctgaaacctgttaagaagaaaaagcggtatcgtgtagatcaaaagagagataaagatattgcaaaatctctgtggtggaccaaatattgtcaaactccttgatatcgtcagagatcagcattcaaaaactccaagcttgatttttgagtacgtgaacagcacagatttcaaggttttgtacccaacgctaacagactatgacatacggtactacatatatgagcttctcaaggtaagatgataaacacatcagatggcagtcaatatggcttttatgtattcatgctccctctcccctgattcttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="84790" stop="87843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85090" g_stop="85399" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85400" i_stop="86582" i_length="1183">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86583" g_stop="86705" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="433" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86706" i_stop="87251" i_length="546">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.361" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87252" g_stop="87543" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="725" r_length="292" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E334421" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334421" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85090" e_stop="85399"/>
          <exon e_start="86583" e_stop="86705"/>
          <exon e_start="87252" e_stop="87543"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAGCAGCATACAAGAGAGAGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGGGTAAATATTTTCCCTTATTTAACCCTAATCGCTTTTGATTTTGTTTTTAGTTTTGGGGGTTTGTATACTGGATAATAGATTGAAATTCTTGAATTAGATGCTGTTTATTACCTTTTTTTAAAAAGATTGTTTGGTAAAATAATAACATCCACTTCTAGCATCCAAGAAAATAGTTTTTGCTTATGTTTCCTTGTTTTTTCCGTCTGAAGTAAAAAGTGGGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGGTATGTTTCCTTGTTTTTTTCGTCTGAAAGAAAAGTGGGTGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGTTATGTTTCCTTTTTTAAAGATAAGTGGAGGTTACATAGCATTGTAACATCCACTCCAGGGGTGGGTGAAACCTGAAAACAAATGTTGGGTTTCTTATTCCTATTTTTTGTCTAATAGATAATTGTGTGATCAGTGTTAGATGCTATTTTGGCGAATTCCTGCTATCTTGAATGGAATGACTTTCACATTGGAAAATACCTATTGGGTTAATGCAAAACTCCTGTCTAGTCTTGTTGAACTGAGTCTGTATTTTGTGGCTCCAGATTAGGTTGGGCTTCAAGTCTTTATATGTTTGTTACTTCTATATTAGCTTCCACATGATACAATGGAAGCTAAATAACAAATATAATATACCAATTAGTTGAGTTATATACCAATTTGTTGAGTTTAAGGATTGGTCCTGCTGGTGCACATTTGGACTGAAGTAAATGTTTGTGTAAGTCTTGTAATAAGAGTGAGATTTACAACCCGTTGTGTTAAAAGTTGAATTATTGAATACTTGAATGGAACAGCCCCGAAGTGGAGTGGATAATTATAGAGGCTTCATTTAGTTGACACCAGTTAGTTTATTTTTGTTATTGTATAGTTCTGCTGCATTTATCAAGATGAGAGCATTTTGTGTAACAAGAACTATATAAATGTCTTGCTAAAGTGGGAGAATATAGTTTGTTAATCTTGGTTCTAGAGTACCTTGACCCTTGGCTCAACGATTAGTTTTATCTTACACAAGTATTGGTTTCAGATATGATTCTATTTGACTTACTCAACTTTAATGCACCAGCTACATTGTATTATCCTCACTAGTGCATGTCATATTTATTATTGTAGTGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAGGTATGACGTTTTTTGGCTGAATTAAGATTTCATTTTTCTGCTTCAAAAGGAAAAAAAATGAAGAAGTTTGCAGGAAGAGTTCTTCTGTAATGCAATACTTATTTTTTGTCTGACTTAATATCTATGGATAATCTTCAACATTAATGGAAGAATCTGTATCTAACTCATATAAAGGGGCTTAGTATCTATTGAGAATCATCAACATCGACAGGCTTAATGGAAAAATCTGTATTTAACTCATGAAAAAGACTACTCTCAATTATCTATCCATGTGGTTGATAGGGTGTCAAAGAAATAAGTGAAGTTTCTTTTTTGGAACTTTGGAAAAAATTCAGTTATGTTGTACGAAATGCATAATGCCTAGGTTCATCTCTTGATGACATTTTTTGATCGTTTTGGTAGTGTTATGCATCCACTGTTCATACACCTTTTGTCCTCCTATCCTTTCTTTAACTTAATTTTTAAATTAACACTGTTTTAGTTTGTAATATTGTGCTTTATACGGAAAAAAAGAAAAGAATATACATGCTTTTGACTTGACATTAGCGGTATCGTGTAGATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAGGTAAGATGATAAACACATCAGATGGCAGTCAATATGGCTTTTATGTATTCATGCTCCCTCTCCCCTGATTCTTTTTTTTTTTTT</genome_strand>
        <mrna_strand>AATAGCAGCATACAAGAGAGAGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTATCGTGTAGATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAGGTAAGATGATAAACACATCAGATGGCAGTCAATATGGCTTTTATGTATTCATGCTCCCTCTCCCCTGATTCTTTTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E699179" ref_strand="+" ref_description="SGN-E699179 [FA08DH09]">
      <seq>ccttaagagagagcaaaaagctttcccaatctatggctttttcctaaaaatggtgtgtgagtaaagtagtgttattgctctggcggttgcatcaaacagaagcggggcccaattccttcgttgcatctacccagcctgcgtcttctttgttgtcccttttccgaaatccgatacctttatcaataactcttcagtctctgatttccggataaaccatgtccaaagctcgagtatacaccgatatcaatgtgcttcgtcctagggaatattgggattacgaatcgctaactgttcaatggggtgatcaggatgactatgaggttgttcgaaaagttggaagaggaaaatacagtgaagtttttgaaggtataaatgttaacagcagggagaagtgcataatcaagatcctgaaacctgttaagaagaaaaagatcaaaagagagataaagatattgcaaaatctctgtggtggaccaaatattgtcaaactccttgatatcgtcagagatcagcattcaaaaactccaagcttgatttttgagtacgtgaacagcacagatttcaaggttttgtacccaacgctaacagactatgacatacggtactacatatatgagcttctcaaggcactagattattgccattcacagggaataatgcacagggatgtcaaacctcataacgttatgatagaccatgaactgcggaagcttcgcttgatagattggggtcttgccgaattttaccacccagggaaggaatataatgttcgtgtggcttcaagatactttcaggggccctgaacttctagttgacttgcaagactatgactattctttggacatgtggagccttggctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="84803" stop="90318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85098" g_stop="85399" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85400" i_stop="86575" i_length="1176">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86576" g_stop="86705" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="431" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86706" i_stop="87264" i_length="559">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.273" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87265" g_stop="87459" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="626" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87460" i_stop="88939" i_length="1480">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88940" g_stop="89097" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="784" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89098" i_stop="89943" i_length="846">
            <donor d_prob="0.568" d_score="1.00"/>
            <acceptor a_prob="0.911" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89944" g_stop="90018" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="785" r_stop="860" r_length="76" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E699179" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>860</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699179" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85098" e_stop="85399"/>
          <exon e_start="86576" e_stop="86705"/>
          <exon e_start="87265" e_stop="87459"/>
          <exon e_start="88940" e_stop="89097"/>
          <exon e_start="89944" e_stop="90018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATACAAGAGAGAGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGGGTAAATATTTTCCCTTATTTAACCCTAATCGCTTTTGATTTTGTTTTTAGTTTTGGGGGTTTGTATACTGGATAATAGATTGAAATTCTTGAATTAGATGCTGTTTATTACCTTTTTTTAAAAAGATTGTTTGGTAAAATAATAACATCCACTTCTAGCATCCAAGAAAATAGTTTTTGCTTATGTTTCCTTGTTTTTTCCGTCTGAAGTAAAAAGTGGGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGGTATGTTTCCTTGTTTTTTTCGTCTGAAAGAAAAGTGGGTGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGTTATGTTTCCTTTTTTAAAGATAAGTGGAGGTTACATAGCATTGTAACATCCACTCCAGGGGTGGGTGAAACCTGAAAACAAATGTTGGGTTTCTTATTCCTATTTTTTGTCTAATAGATAATTGTGTGATCAGTGTTAGATGCTATTTTGGCGAATTCCTGCTATCTTGAATGGAATGACTTTCACATTGGAAAATACCTATTGGGTTAATGCAAAACTCCTGTCTAGTCTTGTTGAACTGAGTCTGTATTTTGTGGCTCCAGATTAGGTTGGGCTTCAAGTCTTTATATGTTTGTTACTTCTATATTAGCTTCCACATGATACAATGGAAGCTAAATAACAAATATAATATACCAATTAGTTGAGTTATATACCAATTTGTTGAGTTTAAGGATTGGTCCTGCTGGTGCACATTTGGACTGAAGTAAATGTTTGTGTAAGTCTTGTAATAAGAGTGAGATTTACAACCCGTTGTGTTAAAAGTTGAATTATTGAATACTTGAATGGAACAGCCCCGAAGTGGAGTGGATAATTATAGAGGCTTCATTTAGTTGACACCAGTTAGTTTATTTTTGTTATTGTATAGTTCTGCTGCATTTATCAAGATGAGAGCATTTTGTGTAACAAGAACTATATAAATGTCTTGCTAAAGTGGGAGAATATAGTTTGTTAATCTTGGTTCTAGAGTACCTTGACCCTTGGCTCAACGATTAGTTTTATCTTACACAAGTATTGGTTTCAGATATGATTCTATTTGACTTACTCAACTTTAATGCACCAGCTACATTGTATTATCCTCACTAGTGCATGTCATATTTATTATTGTAGTGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAGGTATGACGTTTTTTGGCTGAATTAAGATTTCATTTTTCTGCTTCAAAAGGAAAAAAAATGAAGAAGTTTGCAGGAAGAGTTCTTCTGTAATGCAATACTTATTTTTTGTCTGACTTAATATCTATGGATAATCTTCAACATTAATGGAAGAATCTGTATCTAACTCATATAAAGGGGCTTAGTATCTATTGAGAATCATCAACATCGACAGGCTTAATGGAAAAATCTGTATTTAACTCATGAAAAAGACTACTCTCAATTATCTATCCATGTGGTTGATAGGGTGTCAAAGAAATAAGTGAAGTTTCTTTTTTGGAACTTTGGAAAAAATTCAGTTATGTTGTACGAAATGCATAATGCCTAGGTTCATCTCTTGATGACATTTTTTGATCGTTTTGGTAGTGTTATGCATCCACTGTTCATACACCTTTTGTCCTCCTATCCTTTCTTTAACTTAATTTTTAAATTAACACTGTTTTAGTTTGTAATATTGTGCTTTATACGGAAAAAAAGAAAAGAATATACATGCTTTTGACTTGACATTAGCGGTATCGTGTAGATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAGGTAAGATGATAAACACATCAGATGGCAGTCAATATGGCTTTTATGTATTCATGCTCCCTCTCCCCTGATTCTTTTTTTTTTTTTTAAGGAAGGTAACAGTTATATACTTCCTGTCCTCTTGGTCCTCCTTTTCTGTATCTTCTTTCTTCTCTCAGAACCAAGAATAGAGTTGTACTGATGTCTTAACTTACTATCTGGTCAAAACTTTGTTTGTCTCCAACATTTCCTTCTATTGCAGCTTTTCAAGGTTTGTATGAGTATGAGAATTTTGGGAGTCCCCAGTTTTCTTATGCTCAGCAACTATTTCTGAATTGAGTGGATATATTCTCATATACTATGATCAAATTATGAGATCAAACTATCAAAGTTATAACTCCTAGGCTCATCTCAAGTGGAAATTTTGGAATCCAAGATTCTGGTGCCATAAAACTGCACTAATTTGGATTCATCTTATATCTATATTTAGATAATTGGGAGTCTGTCGAATGTGTCTCGTGATCTTGGGTTAGTGGGAATGACTAAGACTGTAAACTCATATTTGTTCACCTTATCCTGCCTGCCAATACATGGATTTCAAATCCATCATCAAAAATGTAGATTTTTCTTATTGATATTGTCAGCTCATTCACTGTCTTGGTCATTCCAATTGATTACCTTTCCTCTGCAATTCGGTCTAAGTATAGCTTCTGAATGTGTTTTTTACAAGGTAAATGACCTCATAGTGAGGTGCTTACCATGTCTCTTGTTATCAGATGATATGAATTAGATTCACTGCATGCCTATTGGAAGTTGATTTTATATCTAGATTAATGGCTATGCTCGTTGTTACTCTTAACAATGTGACATTTTTTTTCTGACTTTGGATTTCTTAAGTAACTCTCTTGTATTCTTCTGATCTTATAATTGGTTAAGGAAAAAAAATTCACCAATGCCATGGATATTCTCTCCTCTGTTTGCTAATTGCTATTTAAATTTCATTTTCCTTTTTCACGAGTAATATTATATTCCCTTTTTGTCTGATTTGCGTGAGAGTAACTATTTGGAAATGGGGATGCTAATTATTGGATCCTGTTGATTTCTATCTCGAAGTTAGTTCTTCCTTTTTGCTACATGCCTACATCACCAGCCTACCTGATCATATGTCTAGGTTTCCTTTCTTTTGCCTCCTCCTGCGAAAAAAAGAAAAGAAATTTAACTTCTCAAGCTTTCTCATTGTGTATCAGCATAATTGTTTGTCAAATGCTAGATCTGTTCCTGCATACTTACTTTCCATTCGCTTAATTTACTCTATTAATTTCCCCTTCTTTTTTGAAAGAAAAGAAAGAATCACGTTTTTGGCATGACTGCTGAATTTGCTGAGGCCTTCATTTCTTGTGACAGTTGTTTAATAGACTCTTTGGGACCTATTCTTTGTGTACATTTCTTGACATGCTTACCAATTTATGGAGGTCGAAAACTGAAACTTCTTATCAACCTGCAGGCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCCGAATTTTACCACCCAGGGAAGGAATATAATGTTCGTGTGGCTTCAAGGTGAGATAATCTGCCGACAGTATGGCTGGACCGGCATAGTTGCTTTGCCAGCAACAACTTCCTACATATAGCATTGCTATTTGTAGATCCATGCTCTACTTGCAAATTATTCTCTGGACAAGTCATGAGTTTTTAATCAGAAAGCAAGTGACATTGTTATATATTTTTTAAGTCAGAAATAATAAAAGGAACATCATTCACTTACATATACAACAACTACCCGTCAGTTCCAAACTAGTCGGGGTCGTTATATGATTTTTGCTGTCCATGTTACTCCATTTAATCCCATATCTTGCGGACTTGTAAAGTTTAGAATCTCTATATTTTCTTAACTGACAAACTTCTGAAAAGCTAAAACACTCCTAGAAAGTATAGGACCTACAGGAAAATTCTAATATATTAATATATTCTCGACTAATATGTAGCATATATATAGAATTTTTTCTTCCATTGTGCCTTTCGTAAGTTCACATGGATCCTTAAAATTATAGGTCCTTAAAGACAACTTCCTTCCATGTGATTTTAGGTCTACTTCGTTTTTTAACAGCTCCACTCACCATAGTTTCACACTCAGGAGTCAGTGCATCAGGAGGGGTTAATGCAAGACATAATCAAATCATCTCAAGGAACAGCTGAGTTCTTAAAGAATACTTAAAACAATACCCATTAAAGAATACTTAAAACAATCAATGGGATTATAGGAAAAGGTTAGGAATTGTTTATGTAAAACTAATTCTGTATCAGCATAGCTGCATATGGGAAATTGGTTTTGTACCGTAAGTTAGTGGTTCATAAACTATCAATGCTATTGAAGCAAGTCTGAGTTCTTCTTTTCTTGCACTTCAGATAC-TTCAAGGGCCCTGAACTTCTAGTTGACTTGCAAGACTATGACTATTCTTTGGACATGTGGAGCCTTGGCTG</genome_strand>
        <mrna_strand>CCTT-AAGAGAGAGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCCGAATTTTACCACCCAGGGAAGGAATATAATGTTCGTGTGGCTTCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTTCAGGGGCCCTGAACTTCTAGTTGACTTGCAAGACTATGACTATTCTTTGGACATGTGGAGCCTTGGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E709296" ref_strand="+" ref_description="SGN-E709296 [FA51BB11]">
      <seq>cgctaaagagaccaaaaagctttcccaatctatggctttttccttaaaatggtgtgtgagtaaagtagtgttattgctctggcggttgcatcaaacagaagcggggcccaattccttcgttgcatctacccagcctgcgtcttctttgttgtcccttttccgaaatccgatacctttatcaataactcttcagtctctgatttccggataaaccatgtccaaagctcgagtatacaccgatatcaatgtgcttcgtcctagggaatattgggattacgaatcgctaactgttcaatggggtgatcaggatgactatgaggttgttcgaaaagttggaagaggaaaatacagtgaagtttttgaaggtataaatgttaacagcagggagaagtgcataatcaagatcctgaaacctgttaagaagaaaaagatcaaaagagagataaagatattgcaaaatctctgtggtggaccaaatattgtcaaactccttgatatcgtcagagatcagcattcaaaaactccaagcttgatttttgagtacgtgaacagcacagatttcaaggttttgtacccaacgctaacagactatgacatacggtactacatatatgagcttctcaaggcactagattattgccattcacagggaataatgcacagggatgtcaaacctcataacgttatgatagaccatgaactgcggaagcttcgcttgatagattggggtcttgccgaattttaccacccagggaaggaatataatgttcgtgtggcttcaagatacttcaggggcccctgaacttctagttgacttgcaagactatgactattcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="84803" stop="90297"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85100" g_stop="85399" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85400" i_stop="86575" i_length="1176">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86576" g_stop="86705" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="430" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86706" i_stop="87264" i_length="559">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.273" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87265" g_stop="87459" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="625" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87460" i_stop="88939" i_length="1480">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88940" g_stop="89097" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="783" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89098" i_stop="89943" i_length="846">
            <donor d_prob="0.568" d_score="1.00"/>
            <acceptor a_prob="0.911" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89944" g_stop="89997" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="784" r_stop="838" r_length="55" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E709296" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>837</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85100" e_stop="85399"/>
          <exon e_start="86576" e_stop="86705"/>
          <exon e_start="87265" e_stop="87459"/>
          <exon e_start="88940" e_stop="89097"/>
          <exon e_start="89944" e_stop="89997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAAGAGAGAGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGGGTAAATATTTTCCCTTATTTAACCCTAATCGCTTTTGATTTTGTTTTTAGTTTTGGGGGTTTGTATACTGGATAATAGATTGAAATTCTTGAATTAGATGCTGTTTATTACCTTTTTTTAAAAAGATTGTTTGGTAAAATAATAACATCCACTTCTAGCATCCAAGAAAATAGTTTTTGCTTATGTTTCCTTGTTTTTTCCGTCTGAAGTAAAAAGTGGGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGGTATGTTTCCTTGTTTTTTTCGTCTGAAAGAAAAGTGGGTGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGTTATGTTTCCTTTTTTAAAGATAAGTGGAGGTTACATAGCATTGTAACATCCACTCCAGGGGTGGGTGAAACCTGAAAACAAATGTTGGGTTTCTTATTCCTATTTTTTGTCTAATAGATAATTGTGTGATCAGTGTTAGATGCTATTTTGGCGAATTCCTGCTATCTTGAATGGAATGACTTTCACATTGGAAAATACCTATTGGGTTAATGCAAAACTCCTGTCTAGTCTTGTTGAACTGAGTCTGTATTTTGTGGCTCCAGATTAGGTTGGGCTTCAAGTCTTTATATGTTTGTTACTTCTATATTAGCTTCCACATGATACAATGGAAGCTAAATAACAAATATAATATACCAATTAGTTGAGTTATATACCAATTTGTTGAGTTTAAGGATTGGTCCTGCTGGTGCACATTTGGACTGAAGTAAATGTTTGTGTAAGTCTTGTAATAAGAGTGAGATTTACAACCCGTTGTGTTAAAAGTTGAATTATTGAATACTTGAATGGAACAGCCCCGAAGTGGAGTGGATAATTATAGAGGCTTCATTTAGTTGACACCAGTTAGTTTATTTTTGTTATTGTATAGTTCTGCTGCATTTATCAAGATGAGAGCATTTTGTGTAACAAGAACTATATAAATGTCTTGCTAAAGTGGGAGAATATAGTTTGTTAATCTTGGTTCTAGAGTACCTTGACCCTTGGCTCAACGATTAGTTTTATCTTACACAAGTATTGGTTTCAGATATGATTCTATTTGACTTACTCAACTTTAATGCACCAGCTACATTGTATTATCCTCACTAGTGCATGTCATATTTATTATTGTAGTGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAGGTATGACGTTTTTTGGCTGAATTAAGATTTCATTTTTCTGCTTCAAAAGGAAAAAAAATGAAGAAGTTTGCAGGAAGAGTTCTTCTGTAATGCAATACTTATTTTTTGTCTGACTTAATATCTATGGATAATCTTCAACATTAATGGAAGAATCTGTATCTAACTCATATAAAGGGGCTTAGTATCTATTGAGAATCATCAACATCGACAGGCTTAATGGAAAAATCTGTATTTAACTCATGAAAAAGACTACTCTCAATTATCTATCCATGTGGTTGATAGGGTGTCAAAGAAATAAGTGAAGTTTCTTTTTTGGAACTTTGGAAAAAATTCAGTTATGTTGTACGAAATGCATAATGCCTAGGTTCATCTCTTGATGACATTTTTTGATCGTTTTGGTAGTGTTATGCATCCACTGTTCATACACCTTTTGTCCTCCTATCCTTTCTTTAACTTAATTTTTAAATTAACACTGTTTTAGTTTGTAATATTGTGCTTTATACGGAAAAAAAGAAAAGAATATACATGCTTTTGACTTGACATTAGCGGTATCGTGTAGATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAGGTAAGATGATAAACACATCAGATGGCAGTCAATATGGCTTTTATGTATTCATGCTCCCTCTCCCCTGATTCTTTTTTTTTTTTTTAAGGAAGGTAACAGTTATATACTTCCTGTCCTCTTGGTCCTCCTTTTCTGTATCTTCTTTCTTCTCTCAGAACCAAGAATAGAGTTGTACTGATGTCTTAACTTACTATCTGGTCAAAACTTTGTTTGTCTCCAACATTTCCTTCTATTGCAGCTTTTCAAGGTTTGTATGAGTATGAGAATTTTGGGAGTCCCCAGTTTTCTTATGCTCAGCAACTATTTCTGAATTGAGTGGATATATTCTCATATACTATGATCAAATTATGAGATCAAACTATCAAAGTTATAACTCCTAGGCTCATCTCAAGTGGAAATTTTGGAATCCAAGATTCTGGTGCCATAAAACTGCACTAATTTGGATTCATCTTATATCTATATTTAGATAATTGGGAGTCTGTCGAATGTGTCTCGTGATCTTGGGTTAGTGGGAATGACTAAGACTGTAAACTCATATTTGTTCACCTTATCCTGCCTGCCAATACATGGATTTCAAATCCATCATCAAAAATGTAGATTTTTCTTATTGATATTGTCAGCTCATTCACTGTCTTGGTCATTCCAATTGATTACCTTTCCTCTGCAATTCGGTCTAAGTATAGCTTCTGAATGTGTTTTTTACAAGGTAAATGACCTCATAGTGAGGTGCTTACCATGTCTCTTGTTATCAGATGATATGAATTAGATTCACTGCATGCCTATTGGAAGTTGATTTTATATCTAGATTAATGGCTATGCTCGTTGTTACTCTTAACAATGTGACATTTTTTTTCTGACTTTGGATTTCTTAAGTAACTCTCTTGTATTCTTCTGATCTTATAATTGGTTAAGGAAAAAAAATTCACCAATGCCATGGATATTCTCTCCTCTGTTTGCTAATTGCTATTTAAATTTCATTTTCCTTTTTCACGAGTAATATTATATTCCCTTTTTGTCTGATTTGCGTGAGAGTAACTATTTGGAAATGGGGATGCTAATTATTGGATCCTGTTGATTTCTATCTCGAAGTTAGTTCTTCCTTTTTGCTACATGCCTACATCACCAGCCTACCTGATCATATGTCTAGGTTTCCTTTCTTTTGCCTCCTCCTGCGAAAAAAAGAAAAGAAATTTAACTTCTCAAGCTTTCTCATTGTGTATCAGCATAATTGTTTGTCAAATGCTAGATCTGTTCCTGCATACTTACTTTCCATTCGCTTAATTTACTCTATTAATTTCCCCTTCTTTTTTGAAAGAAAAGAAAGAATCACGTTTTTGGCATGACTGCTGAATTTGCTGAGGCCTTCATTTCTTGTGACAGTTGTTTAATAGACTCTTTGGGACCTATTCTTTGTGTACATTTCTTGACATGCTTACCAATTTATGGAGGTCGAAAACTGAAACTTCTTATCAACCTGCAGGCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCCGAATTTTACCACCCAGGGAAGGAATATAATGTTCGTGTGGCTTCAAGGTGAGATAATCTGCCGACAGTATGGCTGGACCGGCATAGTTGCTTTGCCAGCAACAACTTCCTACATATAGCATTGCTATTTGTAGATCCATGCTCTACTTGCAAATTATTCTCTGGACAAGTCATGAGTTTTTAATCAGAAAGCAAGTGACATTGTTATATATTTTTTAAGTCAGAAATAATAAAAGGAACATCATTCACTTACATATACAACAACTACCCGTCAGTTCCAAACTAGTCGGGGTCGTTATATGATTTTTGCTGTCCATGTTACTCCATTTAATCCCATATCTTGCGGACTTGTAAAGTTTAGAATCTCTATATTTTCTTAACTGACAAACTTCTGAAAAGCTAAAACACTCCTAGAAAGTATAGGACCTACAGGAAAATTCTAATATATTAATATATTCTCGACTAATATGTAGCATATATATAGAATTTTTTCTTCCATTGTGCCTTTCGTAAGTTCACATGGATCCTTAAAATTATAGGTCCTTAAAGACAACTTCCTTCCATGTGATTTTAGGTCTACTTCGTTTTTTAACAGCTCCACTCACCATAGTTTCACACTCAGGAGTCAGTGCATCAGGAGGGGTTAATGCAAGACATAATCAAATCATCTCAAGGAACAGCTGAGTTCTTAAAGAATACTTAAAACAATACCCATTAAAGAATACTTAAAACAATCAATGGGATTATAGGAAAAGGTTAGGAATTGTTTATGTAAAACTAATTCTGTATCAGCATAGCTGCATATGGGAAATTGGTTTTGTACCGTAAGTTAGTGGTTCATAAACTATCAATGCTATTGAAGCAAGTCTGAGTTCTTCTTTTCTTGCACTTCAGATACTTCAAGGG-CCCTGAACTTCTAGTTGACTTGCAAGACTATGACTATTCTTT</genome_strand>
        <mrna_strand>CGCTAAAGAGACCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTTAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCCGAATTTTACCACCCAGGGAAGGAATATAATGTTCGTGTGGCTTCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTCAGGGGCCCCTGAACTTCTAGTTGACTTGCAAGACTATGACTATTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E306626" ref_strand="+" ref_description="SGN-E306626 [cLEY-19-A14]">
      <seq>tacaagagatagcaaaaagctttgccaatctatggctttttcctaaaaatggtgtgtgagtaaagtagtgttattgctctggcggttgcatcaaacagaagcggggcccaattccttcgttgcatctacccagcctgcgtcttctttgttgtcccttttccgaaatccgatacctttatcaataactcttcagtctctgatttccggataaaccatgtccaaagctcgagtatacaccgatatcaatgtgcttcgtcctagggaatattgggattacgaatcgctaactgttcaatggggtgatcaggatgactatgaggttgttcgaaaagttggaagaggaaaatacagtgaagtttttgaaggtataaatgttaacagcagggagaagtgcataatcaagatcctgaaacctgttaagaagaaaaagatcaaaagagagataaagatattgcaaaatctctgtggtggaccaaatattgtcaaactccttgatatcgtcagagatcagcattcaaaaactccaagcttgatttttgagtacgtgaacagcacagatttcaaggttttgtacccaacgctaacagactatgacatacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="84800" stop="87734"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85100" g_stop="85399" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85400" i_stop="86575" i_length="1176">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86576" g_stop="86705" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="430" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86706" i_stop="87264" i_length="559">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.273" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87265" g_stop="87434" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="600" r_length="170" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E306626" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85100" e_stop="85399"/>
          <exon e_start="86576" e_stop="86705"/>
          <exon e_start="87265" e_stop="87434"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAAGAGAGAGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGGGTAAATATTTTCCCTTATTTAACCCTAATCGCTTTTGATTTTGTTTTTAGTTTTGGGGGTTTGTATACTGGATAATAGATTGAAATTCTTGAATTAGATGCTGTTTATTACCTTTTTTTAAAAAGATTGTTTGGTAAAATAATAACATCCACTTCTAGCATCCAAGAAAATAGTTTTTGCTTATGTTTCCTTGTTTTTTCCGTCTGAAGTAAAAAGTGGGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGGTATGTTTCCTTGTTTTTTTCGTCTGAAAGAAAAGTGGGTGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGTTATGTTTCCTTTTTTAAAGATAAGTGGAGGTTACATAGCATTGTAACATCCACTCCAGGGGTGGGTGAAACCTGAAAACAAATGTTGGGTTTCTTATTCCTATTTTTTGTCTAATAGATAATTGTGTGATCAGTGTTAGATGCTATTTTGGCGAATTCCTGCTATCTTGAATGGAATGACTTTCACATTGGAAAATACCTATTGGGTTAATGCAAAACTCCTGTCTAGTCTTGTTGAACTGAGTCTGTATTTTGTGGCTCCAGATTAGGTTGGGCTTCAAGTCTTTATATGTTTGTTACTTCTATATTAGCTTCCACATGATACAATGGAAGCTAAATAACAAATATAATATACCAATTAGTTGAGTTATATACCAATTTGTTGAGTTTAAGGATTGGTCCTGCTGGTGCACATTTGGACTGAAGTAAATGTTTGTGTAAGTCTTGTAATAAGAGTGAGATTTACAACCCGTTGTGTTAAAAGTTGAATTATTGAATACTTGAATGGAACAGCCCCGAAGTGGAGTGGATAATTATAGAGGCTTCATTTAGTTGACACCAGTTAGTTTATTTTTGTTATTGTATAGTTCTGCTGCATTTATCAAGATGAGAGCATTTTGTGTAACAAGAACTATATAAATGTCTTGCTAAAGTGGGAGAATATAGTTTGTTAATCTTGGTTCTAGAGTACCTTGACCCTTGGCTCAACGATTAGTTTTATCTTACACAAGTATTGGTTTCAGATATGATTCTATTTGACTTACTCAACTTTAATGCACCAGCTACATTGTATTATCCTCACTAGTGCATGTCATATTTATTATTGTAGTGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAGGTATGACGTTTTTTGGCTGAATTAAGATTTCATTTTTCTGCTTCAAAAGGAAAAAAAATGAAGAAGTTTGCAGGAAGAGTTCTTCTGTAATGCAATACTTATTTTTTGTCTGACTTAATATCTATGGATAATCTTCAACATTAATGGAAGAATCTGTATCTAACTCATATAAAGGGGCTTAGTATCTATTGAGAATCATCAACATCGACAGGCTTAATGGAAAAATCTGTATTTAACTCATGAAAAAGACTACTCTCAATTATCTATCCATGTGGTTGATAGGGTGTCAAAGAAATAAGTGAAGTTTCTTTTTTGGAACTTTGGAAAAAATTCAGTTATGTTGTACGAAATGCATAATGCCTAGGTTCATCTCTTGATGACATTTTTTGATCGTTTTGGTAGTGTTATGCATCCACTGTTCATACACCTTTTGTCCTCCTATCCTTTCTTTAACTTAATTTTTAAATTAACACTGTTTTAGTTTGTAATATTGTGCTTTATACGGAAAAAAAGAAAAGAATATACATGCTTTTGACTTGACATTAGCGGTATCGTGTAGATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACG</genome_strand>
        <mrna_strand>TACAAGAGATAGCAAAAAGCTTTGCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E555395" ref_strand="+" ref_description="SGN-E555395 [cTSC-2-M1]">
      <seq>caagagagagcaaaaagctttcccaatctatggctttttcctaaaaatggtgtgtgagtaaagtagtgttattgctctggcggttgcatcaaacagaagcggggcccaattccttcgttgcatctacccagcctgcgtcttctttgttgtcccttttccgaaatccgatacctttatcaataactcttcagtctctgatttccggataaaccatgtccaaagctcgagtatacaccgatatcaatgtgcttcgtcctagggaatattgggattacgaatcgctaactgttcaatggggtgatcaggatgactatgaggttgttcgaaaagttggaagaggaaaatacagtgaagtttttgaaggtataaatgttaacagcagggagaagtgcataatcaagatcctgaaacctgttaagaagaaaaagatcaaaagagagataaagatattgcaaaatctctgtggtggaccaaatattgtcaaactccttgatatcgtcagagatcagcattcaaaaactccaagcttgatttttgagtacgtgaacagcacagatttcaaggttttgtacccaacgctaacagactatgacatacggtactacatatatgagcttctcaaggcactagattattgccattcacagggaataatgcacagggatgtcaaacctcataacgttatgatagaccatgaactgcggaagcttcgcttgatagattgnggtcttgccgaattttaccacccaaggaaggaatataatgttcgtgtggcttcaagatacttcaagggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="84802" stop="90258"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85102" g_stop="85399" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85400" i_stop="86575" i_length="1176">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86576" g_stop="86705" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="428" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86706" i_stop="87264" i_length="559">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.273" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87265" g_stop="87459" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="623" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87460" i_stop="88939" i_length="1480">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88940" g_stop="89097" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="781" r_length="158" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89098" i_stop="89943" i_length="846">
            <donor d_prob="0.568" d_score="0.98"/>
            <acceptor a_prob="0.911" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89944" g_stop="89958" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="782" r_stop="796" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E555395" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E555395" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85102" e_stop="85399"/>
          <exon e_start="86576" e_stop="86705"/>
          <exon e_start="87265" e_stop="87459"/>
          <exon e_start="88940" e_stop="89097"/>
          <exon e_start="89944" e_stop="89958"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAGAGAGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGGGTAAATATTTTCCCTTATTTAACCCTAATCGCTTTTGATTTTGTTTTTAGTTTTGGGGGTTTGTATACTGGATAATAGATTGAAATTCTTGAATTAGATGCTGTTTATTACCTTTTTTTAAAAAGATTGTTTGGTAAAATAATAACATCCACTTCTAGCATCCAAGAAAATAGTTTTTGCTTATGTTTCCTTGTTTTTTCCGTCTGAAGTAAAAAGTGGGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGGTATGTTTCCTTGTTTTTTTCGTCTGAAAGAAAAGTGGGTGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGTTATGTTTCCTTTTTTAAAGATAAGTGGAGGTTACATAGCATTGTAACATCCACTCCAGGGGTGGGTGAAACCTGAAAACAAATGTTGGGTTTCTTATTCCTATTTTTTGTCTAATAGATAATTGTGTGATCAGTGTTAGATGCTATTTTGGCGAATTCCTGCTATCTTGAATGGAATGACTTTCACATTGGAAAATACCTATTGGGTTAATGCAAAACTCCTGTCTAGTCTTGTTGAACTGAGTCTGTATTTTGTGGCTCCAGATTAGGTTGGGCTTCAAGTCTTTATATGTTTGTTACTTCTATATTAGCTTCCACATGATACAATGGAAGCTAAATAACAAATATAATATACCAATTAGTTGAGTTATATACCAATTTGTTGAGTTTAAGGATTGGTCCTGCTGGTGCACATTTGGACTGAAGTAAATGTTTGTGTAAGTCTTGTAATAAGAGTGAGATTTACAACCCGTTGTGTTAAAAGTTGAATTATTGAATACTTGAATGGAACAGCCCCGAAGTGGAGTGGATAATTATAGAGGCTTCATTTAGTTGACACCAGTTAGTTTATTTTTGTTATTGTATAGTTCTGCTGCATTTATCAAGATGAGAGCATTTTGTGTAACAAGAACTATATAAATGTCTTGCTAAAGTGGGAGAATATAGTTTGTTAATCTTGGTTCTAGAGTACCTTGACCCTTGGCTCAACGATTAGTTTTATCTTACACAAGTATTGGTTTCAGATATGATTCTATTTGACTTACTCAACTTTAATGCACCAGCTACATTGTATTATCCTCACTAGTGCATGTCATATTTATTATTGTAGTGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAGGTATGACGTTTTTTGGCTGAATTAAGATTTCATTTTTCTGCTTCAAAAGGAAAAAAAATGAAGAAGTTTGCAGGAAGAGTTCTTCTGTAATGCAATACTTATTTTTTGTCTGACTTAATATCTATGGATAATCTTCAACATTAATGGAAGAATCTGTATCTAACTCATATAAAGGGGCTTAGTATCTATTGAGAATCATCAACATCGACAGGCTTAATGGAAAAATCTGTATTTAACTCATGAAAAAGACTACTCTCAATTATCTATCCATGTGGTTGATAGGGTGTCAAAGAAATAAGTGAAGTTTCTTTTTTGGAACTTTGGAAAAAATTCAGTTATGTTGTACGAAATGCATAATGCCTAGGTTCATCTCTTGATGACATTTTTTGATCGTTTTGGTAGTGTTATGCATCCACTGTTCATACACCTTTTGTCCTCCTATCCTTTCTTTAACTTAATTTTTAAATTAACACTGTTTTAGTTTGTAATATTGTGCTTTATACGGAAAAAAAGAAAAGAATATACATGCTTTTGACTTGACATTAGCGGTATCGTGTAGATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAGGTAAGATGATAAACACATCAGATGGCAGTCAATATGGCTTTTATGTATTCATGCTCCCTCTCCCCTGATTCTTTTTTTTTTTTTTAAGGAAGGTAACAGTTATATACTTCCTGTCCTCTTGGTCCTCCTTTTCTGTATCTTCTTTCTTCTCTCAGAACCAAGAATAGAGTTGTACTGATGTCTTAACTTACTATCTGGTCAAAACTTTGTTTGTCTCCAACATTTCCTTCTATTGCAGCTTTTCAAGGTTTGTATGAGTATGAGAATTTTGGGAGTCCCCAGTTTTCTTATGCTCAGCAACTATTTCTGAATTGAGTGGATATATTCTCATATACTATGATCAAATTATGAGATCAAACTATCAAAGTTATAACTCCTAGGCTCATCTCAAGTGGAAATTTTGGAATCCAAGATTCTGGTGCCATAAAACTGCACTAATTTGGATTCATCTTATATCTATATTTAGATAATTGGGAGTCTGTCGAATGTGTCTCGTGATCTTGGGTTAGTGGGAATGACTAAGACTGTAAACTCATATTTGTTCACCTTATCCTGCCTGCCAATACATGGATTTCAAATCCATCATCAAAAATGTAGATTTTTCTTATTGATATTGTCAGCTCATTCACTGTCTTGGTCATTCCAATTGATTACCTTTCCTCTGCAATTCGGTCTAAGTATAGCTTCTGAATGTGTTTTTTACAAGGTAAATGACCTCATAGTGAGGTGCTTACCATGTCTCTTGTTATCAGATGATATGAATTAGATTCACTGCATGCCTATTGGAAGTTGATTTTATATCTAGATTAATGGCTATGCTCGTTGTTACTCTTAACAATGTGACATTTTTTTTCTGACTTTGGATTTCTTAAGTAACTCTCTTGTATTCTTCTGATCTTATAATTGGTTAAGGAAAAAAAATTCACCAATGCCATGGATATTCTCTCCTCTGTTTGCTAATTGCTATTTAAATTTCATTTTCCTTTTTCACGAGTAATATTATATTCCCTTTTTGTCTGATTTGCGTGAGAGTAACTATTTGGAAATGGGGATGCTAATTATTGGATCCTGTTGATTTCTATCTCGAAGTTAGTTCTTCCTTTTTGCTACATGCCTACATCACCAGCCTACCTGATCATATGTCTAGGTTTCCTTTCTTTTGCCTCCTCCTGCGAAAAAAAGAAAAGAAATTTAACTTCTCAAGCTTTCTCATTGTGTATCAGCATAATTGTTTGTCAAATGCTAGATCTGTTCCTGCATACTTACTTTCCATTCGCTTAATTTACTCTATTAATTTCCCCTTCTTTTTTGAAAGAAAAGAAAGAATCACGTTTTTGGCATGACTGCTGAATTTGCTGAGGCCTTCATTTCTTGTGACAGTTGTTTAATAGACTCTTTGGGACCTATTCTTTGTGTACATTTCTTGACATGCTTACCAATTTATGGAGGTCGAAAACTGAAACTTCTTATCAACCTGCAGGCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCCGAATTTTACCACCCAGGGAAGGAATATAATGTTCGTGTGGCTTCAAGGTGAGATAATCTGCCGACAGTATGGCTGGACCGGCATAGTTGCTTTGCCAGCAACAACTTCCTACATATAGCATTGCTATTTGTAGATCCATGCTCTACTTGCAAATTATTCTCTGGACAAGTCATGAGTTTTTAATCAGAAAGCAAGTGACATTGTTATATATTTTTTAAGTCAGAAATAATAAAAGGAACATCATTCACTTACATATACAACAACTACCCGTCAGTTCCAAACTAGTCGGGGTCGTTATATGATTTTTGCTGTCCATGTTACTCCATTTAATCCCATATCTTGCGGACTTGTAAAGTTTAGAATCTCTATATTTTCTTAACTGACAAACTTCTGAAAAGCTAAAACACTCCTAGAAAGTATAGGACCTACAGGAAAATTCTAATATATTAATATATTCTCGACTAATATGTAGCATATATATAGAATTTTTTCTTCCATTGTGCCTTTCGTAAGTTCACATGGATCCTTAAAATTATAGGTCCTTAAAGACAACTTCCTTCCATGTGATTTTAGGTCTACTTCGTTTTTTAACAGCTCCACTCACCATAGTTTCACACTCAGGAGTCAGTGCATCAGGAGGGGTTAATGCAAGACATAATCAAATCATCTCAAGGAACAGCTGAGTTCTTAAAGAATACTTAAAACAATACCCATTAAAGAATACTTAAAACAATCAATGGGATTATAGGAAAAGGTTAGGAATTGTTTATGTAAAACTAATTCTGTATCAGCATAGCTGCATATGGGAAATTGGTTTTGTACCGTAAGTTAGTGGTTCATAAACTATCAATGCTATTGAAGCAAGTCTGAGTTCTTCTTTTCTTGCACTTCAGATACTTCAAGGGCCC</genome_strand>
        <mrna_strand>CAAGAGAGAGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTGCGGAAGCTTCGCTTGATAGATTGNGGTCTTGCCGAATTTTACCACCCAAGGAAGGAATATAATGTTCGTGTGGCTTCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTCAAGGGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E315527" ref_strand="+" ref_description="SGN-E315527 [cTOA-22-C11]">
      <seq>aagagagagcaaaaagctttcccaatctatggctttttcctaaaaatggtgtgtgagtaaagtagtgttattgctctggcggttgcatcaaacagaagcggggcccaattccttcgttgcatctacccagcctgcgtcttctttgttgtcccttttccgaaatccgatacctttatcaataactcttcagtctctgatttccggataaaccatgtccaaagctcgagtatacaccgatatcaatgtgcttcgtcctagggaatattgggattacgaatcgctaactgttcaatggggtgatcaggatgactatgaggttgttcgaaaagttggaagaggaaaatacagtgaagtttttgaaggtataaatgttaacagcagggagaagtgcataatcaagatcctgaaacctgttaagaagaaaaagatcaaaagagagataaagatattgcaaaatctctgtggtggaccaaatattgtcaaactccttgatatcgtcagagatcagcattcaaaaactccaagcttgatttttgagtacgtgaacagcacagatttcaaggttttgtacccaacgctaacagactatgacatacggtactacatatatgagcttctcaaggcactagattattgccattcacagggaataatgcacagggatgtcaaacctcataacgttatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="84803" stop="89304"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85103" g_stop="85399" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85400" i_stop="86575" i_length="1176">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86576" g_stop="86705" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="427" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86706" i_stop="87264" i_length="559">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.273" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87265" g_stop="87459" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="622" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87460" i_stop="88939" i_length="1480">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88940" g_stop="89004" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="623" r_stop="687" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E315527" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315527" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85103" e_stop="85399"/>
          <exon e_start="86576" e_stop="86705"/>
          <exon e_start="87265" e_stop="87459"/>
          <exon e_start="88940" e_stop="89004"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGAGAGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGGGTAAATATTTTCCCTTATTTAACCCTAATCGCTTTTGATTTTGTTTTTAGTTTTGGGGGTTTGTATACTGGATAATAGATTGAAATTCTTGAATTAGATGCTGTTTATTACCTTTTTTTAAAAAGATTGTTTGGTAAAATAATAACATCCACTTCTAGCATCCAAGAAAATAGTTTTTGCTTATGTTTCCTTGTTTTTTCCGTCTGAAGTAAAAAGTGGGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGGTATGTTTCCTTGTTTTTTTCGTCTGAAAGAAAAGTGGGTGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGTTATGTTTCCTTTTTTAAAGATAAGTGGAGGTTACATAGCATTGTAACATCCACTCCAGGGGTGGGTGAAACCTGAAAACAAATGTTGGGTTTCTTATTCCTATTTTTTGTCTAATAGATAATTGTGTGATCAGTGTTAGATGCTATTTTGGCGAATTCCTGCTATCTTGAATGGAATGACTTTCACATTGGAAAATACCTATTGGGTTAATGCAAAACTCCTGTCTAGTCTTGTTGAACTGAGTCTGTATTTTGTGGCTCCAGATTAGGTTGGGCTTCAAGTCTTTATATGTTTGTTACTTCTATATTAGCTTCCACATGATACAATGGAAGCTAAATAACAAATATAATATACCAATTAGTTGAGTTATATACCAATTTGTTGAGTTTAAGGATTGGTCCTGCTGGTGCACATTTGGACTGAAGTAAATGTTTGTGTAAGTCTTGTAATAAGAGTGAGATTTACAACCCGTTGTGTTAAAAGTTGAATTATTGAATACTTGAATGGAACAGCCCCGAAGTGGAGTGGATAATTATAGAGGCTTCATTTAGTTGACACCAGTTAGTTTATTTTTGTTATTGTATAGTTCTGCTGCATTTATCAAGATGAGAGCATTTTGTGTAACAAGAACTATATAAATGTCTTGCTAAAGTGGGAGAATATAGTTTGTTAATCTTGGTTCTAGAGTACCTTGACCCTTGGCTCAACGATTAGTTTTATCTTACACAAGTATTGGTTTCAGATATGATTCTATTTGACTTACTCAACTTTAATGCACCAGCTACATTGTATTATCCTCACTAGTGCATGTCATATTTATTATTGTAGTGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAGGTATGACGTTTTTTGGCTGAATTAAGATTTCATTTTTCTGCTTCAAAAGGAAAAAAAATGAAGAAGTTTGCAGGAAGAGTTCTTCTGTAATGCAATACTTATTTTTTGTCTGACTTAATATCTATGGATAATCTTCAACATTAATGGAAGAATCTGTATCTAACTCATATAAAGGGGCTTAGTATCTATTGAGAATCATCAACATCGACAGGCTTAATGGAAAAATCTGTATTTAACTCATGAAAAAGACTACTCTCAATTATCTATCCATGTGGTTGATAGGGTGTCAAAGAAATAAGTGAAGTTTCTTTTTTGGAACTTTGGAAAAAATTCAGTTATGTTGTACGAAATGCATAATGCCTAGGTTCATCTCTTGATGACATTTTTTGATCGTTTTGGTAGTGTTATGCATCCACTGTTCATACACCTTTTGTCCTCCTATCCTTTCTTTAACTTAATTTTTAAATTAACACTGTTTTAGTTTGTAATATTGTGCTTTATACGGAAAAAAAGAAAAGAATATACATGCTTTTGACTTGACATTAGCGGTATCGTGTAGATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAGGTAAGATGATAAACACATCAGATGGCAGTCAATATGGCTTTTATGTATTCATGCTCCCTCTCCCCTGATTCTTTTTTTTTTTTTTAAGGAAGGTAACAGTTATATACTTCCTGTCCTCTTGGTCCTCCTTTTCTGTATCTTCTTTCTTCTCTCAGAACCAAGAATAGAGTTGTACTGATGTCTTAACTTACTATCTGGTCAAAACTTTGTTTGTCTCCAACATTTCCTTCTATTGCAGCTTTTCAAGGTTTGTATGAGTATGAGAATTTTGGGAGTCCCCAGTTTTCTTATGCTCAGCAACTATTTCTGAATTGAGTGGATATATTCTCATATACTATGATCAAATTATGAGATCAAACTATCAAAGTTATAACTCCTAGGCTCATCTCAAGTGGAAATTTTGGAATCCAAGATTCTGGTGCCATAAAACTGCACTAATTTGGATTCATCTTATATCTATATTTAGATAATTGGGAGTCTGTCGAATGTGTCTCGTGATCTTGGGTTAGTGGGAATGACTAAGACTGTAAACTCATATTTGTTCACCTTATCCTGCCTGCCAATACATGGATTTCAAATCCATCATCAAAAATGTAGATTTTTCTTATTGATATTGTCAGCTCATTCACTGTCTTGGTCATTCCAATTGATTACCTTTCCTCTGCAATTCGGTCTAAGTATAGCTTCTGAATGTGTTTTTTACAAGGTAAATGACCTCATAGTGAGGTGCTTACCATGTCTCTTGTTATCAGATGATATGAATTAGATTCACTGCATGCCTATTGGAAGTTGATTTTATATCTAGATTAATGGCTATGCTCGTTGTTACTCTTAACAATGTGACATTTTTTTTCTGACTTTGGATTTCTTAAGTAACTCTCTTGTATTCTTCTGATCTTATAATTGGTTAAGGAAAAAAAATTCACCAATGCCATGGATATTCTCTCCTCTGTTTGCTAATTGCTATTTAAATTTCATTTTCCTTTTTCACGAGTAATATTATATTCCCTTTTTGTCTGATTTGCGTGAGAGTAACTATTTGGAAATGGGGATGCTAATTATTGGATCCTGTTGATTTCTATCTCGAAGTTAGTTCTTCCTTTTTGCTACATGCCTACATCACCAGCCTACCTGATCATATGTCTAGGTTTCCTTTCTTTTGCCTCCTCCTGCGAAAAAAAGAAAAGAAATTTAACTTCTCAAGCTTTCTCATTGTGTATCAGCATAATTGTTTGTCAAATGCTAGATCTGTTCCTGCATACTTACTTTCCATTCGCTTAATTTACTCTATTAATTTCCCCTTCTTTTTTGAAAGAAAAGAAAGAATCACGTTTTTGGCATGACTGCTGAATTTGCTGAGGCCTTCATTTCTTGTGACAGTTGTTTAATAGACTCTTTGGGACCTATTCTTTGTGTACATTTCTTGACATGCTTACCAATTTATGGAGGTCGAAAACTGAAACTTCTTATCAACCTGCAGGCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGAT</genome_strand>
        <mrna_strand>AAGAGAGAGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E702342" ref_strand="+" ref_description="SGN-E702342 [FA18BH01]">
      <seq>aggagagcaaaaagctttcccaatctatggctttttcctaaaaatggtgtgtgagtaaagtagtgttattgctctggcggttgcatcaaacagaagcggggcccaattccttcgttgcatctacccagcctgcgtcttctttgttgtcccttttccgaaatccgatacctttatcaataactcttcagtctctgatttccggataaaccatgtccaaagctcgagtatacaccgatatcaatgtgcttcgtcctagggaatattgggattacgaatcgctaactgttcaatggggtgatcaggatgactatgaggttgttcgaaaagttggaagaggaaaatacagtgaagtttttgaaggtataaatgttaacagcagggagaagtgcataatcaagatcctgaaacctgttaagaagaaaaagatcaaaagagagataaagatattgcaaaatctctgtggtggaccaaatattgtcaaactccttgatatcgtcagagatcagcattcaaaaactccaagcttgatttttgagtacgtgaacagcacagatttcaaggttttgtacccaacgctaacagactatgacatacggtactacatatatgagcttctcaaggcactagattattgccattcacagggaataatgcacagggatgtcaaacctcataacgttatgatagaccatgaactgcggaagcttcgcttgatagattggggtcttgccgaattttaccacccagggaaggaatataatgttcgtgtggcttcaagatacttncagggccctgaacttctagttgacttgcaagactatgactattctttggacatgtggagccttggctgcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="84805" stop="90322"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85104" g_stop="85399" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="295" r_length="295" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85400" i_stop="86575" i_length="1176">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86576" g_stop="86705" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="425" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86706" i_stop="87264" i_length="559">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.273" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87265" g_stop="87459" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="620" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87460" i_stop="88939" i_length="1480">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88940" g_stop="89097" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="778" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89098" i_stop="89943" i_length="846">
            <donor d_prob="0.568" d_score="1.00"/>
            <acceptor a_prob="0.911" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89944" g_stop="90022" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="779" r_stop="857" r_length="79" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E702342" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>858</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85104" e_stop="85399"/>
          <exon e_start="86576" e_stop="86705"/>
          <exon e_start="87265" e_stop="87459"/>
          <exon e_start="88940" e_stop="89097"/>
          <exon e_start="89944" e_stop="90022"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGAGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGGGTAAATATTTTCCCTTATTTAACCCTAATCGCTTTTGATTTTGTTTTTAGTTTTGGGGGTTTGTATACTGGATAATAGATTGAAATTCTTGAATTAGATGCTGTTTATTACCTTTTTTTAAAAAGATTGTTTGGTAAAATAATAACATCCACTTCTAGCATCCAAGAAAATAGTTTTTGCTTATGTTTCCTTGTTTTTTCCGTCTGAAGTAAAAAGTGGGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGGTATGTTTCCTTGTTTTTTTCGTCTGAAAGAAAAGTGGGTGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGTTATGTTTCCTTTTTTAAAGATAAGTGGAGGTTACATAGCATTGTAACATCCACTCCAGGGGTGGGTGAAACCTGAAAACAAATGTTGGGTTTCTTATTCCTATTTTTTGTCTAATAGATAATTGTGTGATCAGTGTTAGATGCTATTTTGGCGAATTCCTGCTATCTTGAATGGAATGACTTTCACATTGGAAAATACCTATTGGGTTAATGCAAAACTCCTGTCTAGTCTTGTTGAACTGAGTCTGTATTTTGTGGCTCCAGATTAGGTTGGGCTTCAAGTCTTTATATGTTTGTTACTTCTATATTAGCTTCCACATGATACAATGGAAGCTAAATAACAAATATAATATACCAATTAGTTGAGTTATATACCAATTTGTTGAGTTTAAGGATTGGTCCTGCTGGTGCACATTTGGACTGAAGTAAATGTTTGTGTAAGTCTTGTAATAAGAGTGAGATTTACAACCCGTTGTGTTAAAAGTTGAATTATTGAATACTTGAATGGAACAGCCCCGAAGTGGAGTGGATAATTATAGAGGCTTCATTTAGTTGACACCAGTTAGTTTATTTTTGTTATTGTATAGTTCTGCTGCATTTATCAAGATGAGAGCATTTTGTGTAACAAGAACTATATAAATGTCTTGCTAAAGTGGGAGAATATAGTTTGTTAATCTTGGTTCTAGAGTACCTTGACCCTTGGCTCAACGATTAGTTTTATCTTACACAAGTATTGGTTTCAGATATGATTCTATTTGACTTACTCAACTTTAATGCACCAGCTACATTGTATTATCCTCACTAGTGCATGTCATATTTATTATTGTAGTGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAGGTATGACGTTTTTTGGCTGAATTAAGATTTCATTTTTCTGCTTCAAAAGGAAAAAAAATGAAGAAGTTTGCAGGAAGAGTTCTTCTGTAATGCAATACTTATTTTTTGTCTGACTTAATATCTATGGATAATCTTCAACATTAATGGAAGAATCTGTATCTAACTCATATAAAGGGGCTTAGTATCTATTGAGAATCATCAACATCGACAGGCTTAATGGAAAAATCTGTATTTAACTCATGAAAAAGACTACTCTCAATTATCTATCCATGTGGTTGATAGGGTGTCAAAGAAATAAGTGAAGTTTCTTTTTTGGAACTTTGGAAAAAATTCAGTTATGTTGTACGAAATGCATAATGCCTAGGTTCATCTCTTGATGACATTTTTTGATCGTTTTGGTAGTGTTATGCATCCACTGTTCATACACCTTTTGTCCTCCTATCCTTTCTTTAACTTAATTTTTAAATTAACACTGTTTTAGTTTGTAATATTGTGCTTTATACGGAAAAAAAGAAAAGAATATACATGCTTTTGACTTGACATTAGCGGTATCGTGTAGATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAGGTAAGATGATAAACACATCAGATGGCAGTCAATATGGCTTTTATGTATTCATGCTCCCTCTCCCCTGATTCTTTTTTTTTTTTTTAAGGAAGGTAACAGTTATATACTTCCTGTCCTCTTGGTCCTCCTTTTCTGTATCTTCTTTCTTCTCTCAGAACCAAGAATAGAGTTGTACTGATGTCTTAACTTACTATCTGGTCAAAACTTTGTTTGTCTCCAACATTTCCTTCTATTGCAGCTTTTCAAGGTTTGTATGAGTATGAGAATTTTGGGAGTCCCCAGTTTTCTTATGCTCAGCAACTATTTCTGAATTGAGTGGATATATTCTCATATACTATGATCAAATTATGAGATCAAACTATCAAAGTTATAACTCCTAGGCTCATCTCAAGTGGAAATTTTGGAATCCAAGATTCTGGTGCCATAAAACTGCACTAATTTGGATTCATCTTATATCTATATTTAGATAATTGGGAGTCTGTCGAATGTGTCTCGTGATCTTGGGTTAGTGGGAATGACTAAGACTGTAAACTCATATTTGTTCACCTTATCCTGCCTGCCAATACATGGATTTCAAATCCATCATCAAAAATGTAGATTTTTCTTATTGATATTGTCAGCTCATTCACTGTCTTGGTCATTCCAATTGATTACCTTTCCTCTGCAATTCGGTCTAAGTATAGCTTCTGAATGTGTTTTTTACAAGGTAAATGACCTCATAGTGAGGTGCTTACCATGTCTCTTGTTATCAGATGATATGAATTAGATTCACTGCATGCCTATTGGAAGTTGATTTTATATCTAGATTAATGGCTATGCTCGTTGTTACTCTTAACAATGTGACATTTTTTTTCTGACTTTGGATTTCTTAAGTAACTCTCTTGTATTCTTCTGATCTTATAATTGGTTAAGGAAAAAAAATTCACCAATGCCATGGATATTCTCTCCTCTGTTTGCTAATTGCTATTTAAATTTCATTTTCCTTTTTCACGAGTAATATTATATTCCCTTTTTGTCTGATTTGCGTGAGAGTAACTATTTGGAAATGGGGATGCTAATTATTGGATCCTGTTGATTTCTATCTCGAAGTTAGTTCTTCCTTTTTGCTACATGCCTACATCACCAGCCTACCTGATCATATGTCTAGGTTTCCTTTCTTTTGCCTCCTCCTGCGAAAAAAAGAAAAGAAATTTAACTTCTCAAGCTTTCTCATTGTGTATCAGCATAATTGTTTGTCAAATGCTAGATCTGTTCCTGCATACTTACTTTCCATTCGCTTAATTTACTCTATTAATTTCCCCTTCTTTTTTGAAAGAAAAGAAAGAATCACGTTTTTGGCATGACTGCTGAATTTGCTGAGGCCTTCATTTCTTGTGACAGTTGTTTAATAGACTCTTTGGGACCTATTCTTTGTGTACATTTCTTGACATGCTTACCAATTTATGGAGGTCGAAAACTGAAACTTCTTATCAACCTGCAGGCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCCGAATTTTACCACCCAGGGAAGGAATATAATGTTCGTGTGGCTTCAAGGTGAGATAATCTGCCGACAGTATGGCTGGACCGGCATAGTTGCTTTGCCAGCAACAACTTCCTACATATAGCATTGCTATTTGTAGATCCATGCTCTACTTGCAAATTATTCTCTGGACAAGTCATGAGTTTTTAATCAGAAAGCAAGTGACATTGTTATATATTTTTTAAGTCAGAAATAATAAAAGGAACATCATTCACTTACATATACAACAACTACCCGTCAGTTCCAAACTAGTCGGGGTCGTTATATGATTTTTGCTGTCCATGTTACTCCATTTAATCCCATATCTTGCGGACTTGTAAAGTTTAGAATCTCTATATTTTCTTAACTGACAAACTTCTGAAAAGCTAAAACACTCCTAGAAAGTATAGGACCTACAGGAAAATTCTAATATATTAATATATTCTCGACTAATATGTAGCATATATATAGAATTTTTTCTTCCATTGTGCCTTTCGTAAGTTCACATGGATCCTTAAAATTATAGGTCCTTAAAGACAACTTCCTTCCATGTGATTTTAGGTCTACTTCGTTTTTTAACAGCTCCACTCACCATAGTTTCACACTCAGGAGTCAGTGCATCAGGAGGGGTTAATGCAAGACATAATCAAATCATCTCAAGGAACAGCTGAGTTCTTAAAGAATACTTAAAACAATACCCATTAAAGAATACTTAAAACAATCAATGGGATTATAGGAAAAGGTTAGGAATTGTTTATGTAAAACTAATTCTGTATCAGCATAGCTGCATATGGGAAATTGGTTTTGTACCGTAAGTTAGTGGTTCATAAACTATCAATGCTATTGAAGCAAGTCTGAGTTCTTCTTTTCTTGCACTTCAGATACTTCAAGGGCCCTGAACTTCTAGTTGACTTGCAAGACTATGACTATTCTTTGGACATGTGGAGCCTTGGCTGCATG</genome_strand>
        <mrna_strand>AG-GAGAGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCCGAATTTTACCACCCAGGGAAGGAATATAATGTTCGTGTGGCTTCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTNCAGGGCCCTGAACTTCTAGTTGACTTGCAAGACTATGACTATTCTTTGGACATGTGGAGCCTTGGCTGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E707551" ref_strand="+" ref_description="SGN-E707551 [FA33BD01]">
      <seq>cgatagagcaaaaagctttcccaatctatggctttttcctaaaaatggtgtgtgagtaaagtagtgttattgctctggcggttgcatcaaacagaagcggggcccaattccttcgttgcatctacccagcctgcgtcttctttgttgtcccttttccgaaatccgatacctttatcaataactcttcagtctctgatttccggataaaccatgtccaaagctcgagtatacaccgatatcaatgtgcttcgtcctagggaatattgggattacgaatcgctaactgttcaatggggtgatcaggatgactatgaggttgttcgaaaagttggaagaggaaaatacagtgaagtttttgaaggtataaatgttaacagcagggagaagtgcataatcaagatcctgaaacctgttaagaagaaaaagatcaaaagagagataaagatattgcaaaatctctgtggtggaccaaatattgtcaaactccttgatatcgtcagagatcagcattcaaaaactccaagcttgatttttgagtacgtgaacagcacagatttcaaggttttgtacccaacgctaacagactatgacatacggtactacatatatgagcttctcaaggcactagattattgccattcacagggaataatgcacagggatgtcaaacctcataacgttatgatagaccatgaactgcggaagcttcgcttgatagattggggtcttgccgaattttaccacccagggaaggaatataatgttcgtgtggcttcaagatacttcaagggccctgaacttctagttgacttgcaagactatgactattctttggacatgtggagccttggctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="84805" stop="90318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85104" g_stop="85399" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85400" i_stop="86575" i_length="1176">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86576" g_stop="86705" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="426" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86706" i_stop="87264" i_length="559">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.273" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87265" g_stop="87459" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="621" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87460" i_stop="88939" i_length="1480">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88940" g_stop="89097" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="622" r_stop="779" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89098" i_stop="89943" i_length="846">
            <donor d_prob="0.568" d_score="1.00"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89944" g_stop="90018" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="780" r_stop="854" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E707551" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>854</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85104" e_stop="85399"/>
          <exon e_start="86576" e_stop="86705"/>
          <exon e_start="87265" e_stop="87459"/>
          <exon e_start="88940" e_stop="89097"/>
          <exon e_start="89944" e_stop="90018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGAGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGGGTAAATATTTTCCCTTATTTAACCCTAATCGCTTTTGATTTTGTTTTTAGTTTTGGGGGTTTGTATACTGGATAATAGATTGAAATTCTTGAATTAGATGCTGTTTATTACCTTTTTTTAAAAAGATTGTTTGGTAAAATAATAACATCCACTTCTAGCATCCAAGAAAATAGTTTTTGCTTATGTTTCCTTGTTTTTTCCGTCTGAAGTAAAAAGTGGGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGGTATGTTTCCTTGTTTTTTTCGTCTGAAAGAAAAGTGGGTGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGTTATGTTTCCTTTTTTAAAGATAAGTGGAGGTTACATAGCATTGTAACATCCACTCCAGGGGTGGGTGAAACCTGAAAACAAATGTTGGGTTTCTTATTCCTATTTTTTGTCTAATAGATAATTGTGTGATCAGTGTTAGATGCTATTTTGGCGAATTCCTGCTATCTTGAATGGAATGACTTTCACATTGGAAAATACCTATTGGGTTAATGCAAAACTCCTGTCTAGTCTTGTTGAACTGAGTCTGTATTTTGTGGCTCCAGATTAGGTTGGGCTTCAAGTCTTTATATGTTTGTTACTTCTATATTAGCTTCCACATGATACAATGGAAGCTAAATAACAAATATAATATACCAATTAGTTGAGTTATATACCAATTTGTTGAGTTTAAGGATTGGTCCTGCTGGTGCACATTTGGACTGAAGTAAATGTTTGTGTAAGTCTTGTAATAAGAGTGAGATTTACAACCCGTTGTGTTAAAAGTTGAATTATTGAATACTTGAATGGAACAGCCCCGAAGTGGAGTGGATAATTATAGAGGCTTCATTTAGTTGACACCAGTTAGTTTATTTTTGTTATTGTATAGTTCTGCTGCATTTATCAAGATGAGAGCATTTTGTGTAACAAGAACTATATAAATGTCTTGCTAAAGTGGGAGAATATAGTTTGTTAATCTTGGTTCTAGAGTACCTTGACCCTTGGCTCAACGATTAGTTTTATCTTACACAAGTATTGGTTTCAGATATGATTCTATTTGACTTACTCAACTTTAATGCACCAGCTACATTGTATTATCCTCACTAGTGCATGTCATATTTATTATTGTAGTGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAGGTATGACGTTTTTTGGCTGAATTAAGATTTCATTTTTCTGCTTCAAAAGGAAAAAAAATGAAGAAGTTTGCAGGAAGAGTTCTTCTGTAATGCAATACTTATTTTTTGTCTGACTTAATATCTATGGATAATCTTCAACATTAATGGAAGAATCTGTATCTAACTCATATAAAGGGGCTTAGTATCTATTGAGAATCATCAACATCGACAGGCTTAATGGAAAAATCTGTATTTAACTCATGAAAAAGACTACTCTCAATTATCTATCCATGTGGTTGATAGGGTGTCAAAGAAATAAGTGAAGTTTCTTTTTTGGAACTTTGGAAAAAATTCAGTTATGTTGTACGAAATGCATAATGCCTAGGTTCATCTCTTGATGACATTTTTTGATCGTTTTGGTAGTGTTATGCATCCACTGTTCATACACCTTTTGTCCTCCTATCCTTTCTTTAACTTAATTTTTAAATTAACACTGTTTTAGTTTGTAATATTGTGCTTTATACGGAAAAAAAGAAAAGAATATACATGCTTTTGACTTGACATTAGCGGTATCGTGTAGATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAGGTAAGATGATAAACACATCAGATGGCAGTCAATATGGCTTTTATGTATTCATGCTCCCTCTCCCCTGATTCTTTTTTTTTTTTTTAAGGAAGGTAACAGTTATATACTTCCTGTCCTCTTGGTCCTCCTTTTCTGTATCTTCTTTCTTCTCTCAGAACCAAGAATAGAGTTGTACTGATGTCTTAACTTACTATCTGGTCAAAACTTTGTTTGTCTCCAACATTTCCTTCTATTGCAGCTTTTCAAGGTTTGTATGAGTATGAGAATTTTGGGAGTCCCCAGTTTTCTTATGCTCAGCAACTATTTCTGAATTGAGTGGATATATTCTCATATACTATGATCAAATTATGAGATCAAACTATCAAAGTTATAACTCCTAGGCTCATCTCAAGTGGAAATTTTGGAATCCAAGATTCTGGTGCCATAAAACTGCACTAATTTGGATTCATCTTATATCTATATTTAGATAATTGGGAGTCTGTCGAATGTGTCTCGTGATCTTGGGTTAGTGGGAATGACTAAGACTGTAAACTCATATTTGTTCACCTTATCCTGCCTGCCAATACATGGATTTCAAATCCATCATCAAAAATGTAGATTTTTCTTATTGATATTGTCAGCTCATTCACTGTCTTGGTCATTCCAATTGATTACCTTTCCTCTGCAATTCGGTCTAAGTATAGCTTCTGAATGTGTTTTTTACAAGGTAAATGACCTCATAGTGAGGTGCTTACCATGTCTCTTGTTATCAGATGATATGAATTAGATTCACTGCATGCCTATTGGAAGTTGATTTTATATCTAGATTAATGGCTATGCTCGTTGTTACTCTTAACAATGTGACATTTTTTTTCTGACTTTGGATTTCTTAAGTAACTCTCTTGTATTCTTCTGATCTTATAATTGGTTAAGGAAAAAAAATTCACCAATGCCATGGATATTCTCTCCTCTGTTTGCTAATTGCTATTTAAATTTCATTTTCCTTTTTCACGAGTAATATTATATTCCCTTTTTGTCTGATTTGCGTGAGAGTAACTATTTGGAAATGGGGATGCTAATTATTGGATCCTGTTGATTTCTATCTCGAAGTTAGTTCTTCCTTTTTGCTACATGCCTACATCACCAGCCTACCTGATCATATGTCTAGGTTTCCTTTCTTTTGCCTCCTCCTGCGAAAAAAAGAAAAGAAATTTAACTTCTCAAGCTTTCTCATTGTGTATCAGCATAATTGTTTGTCAAATGCTAGATCTGTTCCTGCATACTTACTTTCCATTCGCTTAATTTACTCTATTAATTTCCCCTTCTTTTTTGAAAGAAAAGAAAGAATCACGTTTTTGGCATGACTGCTGAATTTGCTGAGGCCTTCATTTCTTGTGACAGTTGTTTAATAGACTCTTTGGGACCTATTCTTTGTGTACATTTCTTGACATGCTTACCAATTTATGGAGGTCGAAAACTGAAACTTCTTATCAACCTGCAGGCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCCGAATTTTACCACCCAGGGAAGGAATATAATGTTCGTGTGGCTTCAAGGTGAGATAATCTGCCGACAGTATGGCTGGACCGGCATAGTTGCTTTGCCAGCAACAACTTCCTACATATAGCATTGCTATTTGTAGATCCATGCTCTACTTGCAAATTATTCTCTGGACAAGTCATGAGTTTTTAATCAGAAAGCAAGTGACATTGTTATATATTTTTTAAGTCAGAAATAATAAAAGGAACATCATTCACTTACATATACAACAACTACCCGTCAGTTCCAAACTAGTCGGGGTCGTTATATGATTTTTGCTGTCCATGTTACTCCATTTAATCCCATATCTTGCGGACTTGTAAAGTTTAGAATCTCTATATTTTCTTAACTGACAAACTTCTGAAAAGCTAAAACACTCCTAGAAAGTATAGGACCTACAGGAAAATTCTAATATATTAATATATTCTCGACTAATATGTAGCATATATATAGAATTTTTTCTTCCATTGTGCCTTTCGTAAGTTCACATGGATCCTTAAAATTATAGGTCCTTAAAGACAACTTCCTTCCATGTGATTTTAGGTCTACTTCGTTTTTTAACAGCTCCACTCACCATAGTTTCACACTCAGGAGTCAGTGCATCAGGAGGGGTTAATGCAAGACATAATCAAATCATCTCAAGGAACAGCTGAGTTCTTAAAGAATACTTAAAACAATACCCATTAAAGAATACTTAAAACAATCAATGGGATTATAGGAAAAGGTTAGGAATTGTTTATGTAAAACTAATTCTGTATCAGCATAGCTGCATATGGGAAATTGGTTTTGTACCGTAAGTTAGTGGTTCATAAACTATCAATGCTATTGAAGCAAGTCTGAGTTCTTCTTTTCTTGCACTTCAGATACTTCAAGGGCCCTGAACTTCTAGTTGACTTGCAAGACTATGACTATTCTTTGGACATGTGGAGCCTTGGCTG</genome_strand>
        <mrna_strand>CGATAGAGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCCGAATTTTACCACCCAGGGAAGGAATATAATGTTCGTGTGGCTTCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTCAAGGGCCCTGAACTTCTAGTTGACTTGCAAGACTATGACTATTCTTTGGACATGTGGAGCCTTGGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E279335" ref_strand="-" ref_description="SGN-E279335 [cLEL-4-D22](-)">
      <seq>gcacgagaaaaagctttcccaatctatggctttttcctaaaaatggtgtgtgagtaaagtagtgttattgctctggcggttgcatcaaacagaagcggggcccaattccttcgttgcatctacccagcctgcgtcttctttgttgtcccttttccgaaatccgatacctttatcaataactcttcagtctctgatttccggataaaccatgtccaaagctcgagtatacaccgatatcaatgtgcttcgtcctagggaatattgggattacgaatcgctaactgttcaatggggtgatcaggatgactatgaggttgttcgaaaagttggaagaggaaaatacatggaagtttttgaaggtataaaatgttaacagcaggaanaaagtgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="84809" stop="86971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85105" g_stop="85399" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="294" r_length="294" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85400" i_stop="86575" i_length="1176">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86576" g_stop="86671" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="392" r_length="98" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E279335" ref_strand="-">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279335" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="85105" e_stop="85399"/>
          <exon e_start="86576" e_stop="86671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGAGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGGGTAAATATTTTCCCTTATTTAACCCTAATCGCTTTTGATTTTGTTTTTAGTTTTGGGGGTTTGTATACTGGATAATAGATTGAAATTCTTGAATTAGATGCTGTTTATTACCTTTTTTTAAAAAGATTGTTTGGTAAAATAATAACATCCACTTCTAGCATCCAAGAAAATAGTTTTTGCTTATGTTTCCTTGTTTTTTCCGTCTGAAGTAAAAAGTGGGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGGTATGTTTCCTTGTTTTTTTCGTCTGAAAGAAAAGTGGGTGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGTTATGTTTCCTTTTTTAAAGATAAGTGGAGGTTACATAGCATTGTAACATCCACTCCAGGGGTGGGTGAAACCTGAAAACAAATGTTGGGTTTCTTATTCCTATTTTTTGTCTAATAGATAATTGTGTGATCAGTGTTAGATGCTATTTTGGCGAATTCCTGCTATCTTGAATGGAATGACTTTCACATTGGAAAATACCTATTGGGTTAATGCAAAACTCCTGTCTAGTCTTGTTGAACTGAGTCTGTATTTTGTGGCTCCAGATTAGGTTGGGCTTCAAGTCTTTATATGTTTGTTACTTCTATATTAGCTTCCACATGATACAATGGAAGCTAAATAACAAATATAATATACCAATTAGTTGAGTTATATACCAATTTGTTGAGTTTAAGGATTGGTCCTGCTGGTGCACATTTGGACTGAAGTAAATGTTTGTGTAAGTCTTGTAATAAGAGTGAGATTTACAACCCGTTGTGTTAAAAGTTGAATTATTGAATACTTGAATGGAACAGCCCCGAAGTGGAGTGGATAATTATAGAGGCTTCATTTAGTTGACACCAGTTAGTTTATTTTTGTTATTGTATAGTTCTGCTGCATTTATCAAGATGAGAGCATTTTGTGTAACAAGAACTATATAAATGTCTTGCTAAAGTGGGAGAATATAGTTTGTTAATCTTGGTTCTAGAGTACCTTGACCCTTGGCTCAACGATTAGTTTTATCTTACACAAGTATTGGTTTCAGATATGATTCTATTTGACTTACTCAACTTTAATGCACCAGCTACATTGTATTATCCTCACTAGTGCATGTCATATTTATTATTGTAGTGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTAT-AAATGTTAACAGCAGGGAG-AAGTGCAT</genome_strand>
        <mrna_strand>GCACGAG-AAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACATGGAAGTTTTTGAAGGTATAAAATGTTAACAGCAGGAANAAAGTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E300790" ref_strand="+" ref_description="SGN-E300790 [cLEW-8-A2]">
      <seq>agagagcaaaaagctttcccaatctatggctttttcctaaaaatggtgtgtgagtaaagtagtgttattgctctggcggttgcatcaaacagaagcggggcccaattccttcgttgcatctacccaacctgcgtcttctttgttgtcccttttccgaaatccgatacctttatcaataactcttcagtctctgatttccggataaaccatgtccaaagctcgagtatacaccgatatcaatgtgcttcgtcctagggaatattgggattacgaatcgctaactgttcaatggggtgatcaggatgactatgaggttgttcgaaaagttggaagaggaaaatacagtgaagtttttgaaggtataaatgttaacagcagggagaagtgcataatcaagatcctgaaacctgtttagaagaaaaagatcaaaagagagataaagatgttgcaaaatctctgtggtggaccaaatattgtcaaactccttgatatcgtcagagatcatcattcaaaaactccaagcttgatttttgagtacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="84806" stop="87679"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85106" g_stop="85399" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="294" r_length="294" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85400" i_stop="86575" i_length="1176">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86576" g_stop="86705" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="424" r_length="130" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86706" i_stop="87264" i_length="559">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.273" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87265" g_stop="87379" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="539" r_length="115" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E300790" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300790" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85106" e_stop="85399"/>
          <exon e_start="86576" e_stop="86705"/>
          <exon e_start="87265" e_stop="87379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGGGTAAATATTTTCCCTTATTTAACCCTAATCGCTTTTGATTTTGTTTTTAGTTTTGGGGGTTTGTATACTGGATAATAGATTGAAATTCTTGAATTAGATGCTGTTTATTACCTTTTTTTAAAAAGATTGTTTGGTAAAATAATAACATCCACTTCTAGCATCCAAGAAAATAGTTTTTGCTTATGTTTCCTTGTTTTTTCCGTCTGAAGTAAAAAGTGGGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGGTATGTTTCCTTGTTTTTTTCGTCTGAAAGAAAAGTGGGTGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGTTATGTTTCCTTTTTTAAAGATAAGTGGAGGTTACATAGCATTGTAACATCCACTCCAGGGGTGGGTGAAACCTGAAAACAAATGTTGGGTTTCTTATTCCTATTTTTTGTCTAATAGATAATTGTGTGATCAGTGTTAGATGCTATTTTGGCGAATTCCTGCTATCTTGAATGGAATGACTTTCACATTGGAAAATACCTATTGGGTTAATGCAAAACTCCTGTCTAGTCTTGTTGAACTGAGTCTGTATTTTGTGGCTCCAGATTAGGTTGGGCTTCAAGTCTTTATATGTTTGTTACTTCTATATTAGCTTCCACATGATACAATGGAAGCTAAATAACAAATATAATATACCAATTAGTTGAGTTATATACCAATTTGTTGAGTTTAAGGATTGGTCCTGCTGGTGCACATTTGGACTGAAGTAAATGTTTGTGTAAGTCTTGTAATAAGAGTGAGATTTACAACCCGTTGTGTTAAAAGTTGAATTATTGAATACTTGAATGGAACAGCCCCGAAGTGGAGTGGATAATTATAGAGGCTTCATTTAGTTGACACCAGTTAGTTTATTTTTGTTATTGTATAGTTCTGCTGCATTTATCAAGATGAGAGCATTTTGTGTAACAAGAACTATATAAATGTCTTGCTAAAGTGGGAGAATATAGTTTGTTAATCTTGGTTCTAGAGTACCTTGACCCTTGGCTCAACGATTAGTTTTATCTTACACAAGTATTGGTTTCAGATATGATTCTATTTGACTTACTCAACTTTAATGCACCAGCTACATTGTATTATCCTCACTAGTGCATGTCATATTTATTATTGTAGTGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAGGTATGACGTTTTTTGGCTGAATTAAGATTTCATTTTTCTGCTTCAAAAGGAAAAAAAATGAAGAAGTTTGCAGGAAGAGTTCTTCTGTAATGCAATACTTATTTTTTGTCTGACTTAATATCTATGGATAATCTTCAACATTAATGGAAGAATCTGTATCTAACTCATATAAAGGGGCTTAGTATCTATTGAGAATCATCAACATCGACAGGCTTAATGGAAAAATCTGTATTTAACTCATGAAAAAGACTACTCTCAATTATCTATCCATGTGGTTGATAGGGTGTCAAAGAAATAAGTGAAGTTTCTTTTTTGGAACTTTGGAAAAAATTCAGTTATGTTGTACGAAATGCATAATGCCTAGGTTCATCTCTTGATGACATTTTTTGATCGTTTTGGTAGTGTTATGCATCCACTGTTCATACACCTTTTGTCCTCCTATCCTTTCTTTAACTTAATTTTTAAATTAACACTGTTTTAGTTTGTAATATTGTGCTTTATACGGAAAAAAAGAAAAGAATATACATGCTTTTGACTTGACATTAGCGGTATCGTGTAGATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACG</genome_strand>
        <mrna_strand>AGAGAGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAACCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTTAGAAGAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAAGAGAGATAAAGATGTTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCATCATTCAAAAACTCCAAGCTTGATTTTTGAGTACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E346286" ref_strand="+" ref_description="SGN-E346286 [cTOF-23-L13]">
      <seq>gagagcaaaaagctttcccaatctatggctttttcctaaaaatggtgtgtgagtaaagtagtgttattgctctggcggttgcatcaaacagaagcggggcccaattccttcgttgcatctacccagcctgcgtcttctttgttgtcccttttccgaaatccgatacctttatcaataactcttcagtctctgatttccggataaaccatgtccaaagctcgagtatacaccgatatcaatgtgcttcgtcctagggaatattgggattacgaatcgctaactgttcaatggggtgatcaggatgactatgaggttgttcgaaaagttggaagaggaaaatacagtgaagtttttgaaggtataaatgttaacagcagggagaagtgcataatcaagatcctgaaacctgttaagaagaaaaagatcaaaagagagataaagatattgcaaaatctctgtggtggaccaaatattgtcaaactccttgatatcgtcagagatcagcattcaaaaactccaagcttgatttttgagtacgtgaacagcacagatttcaaggttttgtacccaacgctaacagactatgacatacggtactacatatatgagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="84807" stop="87752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85107" g_stop="85399" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="293" r_length="293" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85400" i_stop="86575" i_length="1176">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86576" g_stop="86705" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="423" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86706" i_stop="87264" i_length="559">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.273" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87265" g_stop="87452" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="611" r_length="188" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E346286" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346286" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85107" e_stop="85399"/>
          <exon e_start="86576" e_stop="86705"/>
          <exon e_start="87265" e_stop="87452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGGGTAAATATTTTCCCTTATTTAACCCTAATCGCTTTTGATTTTGTTTTTAGTTTTGGGGGTTTGTATACTGGATAATAGATTGAAATTCTTGAATTAGATGCTGTTTATTACCTTTTTTTAAAAAGATTGTTTGGTAAAATAATAACATCCACTTCTAGCATCCAAGAAAATAGTTTTTGCTTATGTTTCCTTGTTTTTTCCGTCTGAAGTAAAAAGTGGGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGGTATGTTTCCTTGTTTTTTTCGTCTGAAAGAAAAGTGGGTGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGTTATGTTTCCTTTTTTAAAGATAAGTGGAGGTTACATAGCATTGTAACATCCACTCCAGGGGTGGGTGAAACCTGAAAACAAATGTTGGGTTTCTTATTCCTATTTTTTGTCTAATAGATAATTGTGTGATCAGTGTTAGATGCTATTTTGGCGAATTCCTGCTATCTTGAATGGAATGACTTTCACATTGGAAAATACCTATTGGGTTAATGCAAAACTCCTGTCTAGTCTTGTTGAACTGAGTCTGTATTTTGTGGCTCCAGATTAGGTTGGGCTTCAAGTCTTTATATGTTTGTTACTTCTATATTAGCTTCCACATGATACAATGGAAGCTAAATAACAAATATAATATACCAATTAGTTGAGTTATATACCAATTTGTTGAGTTTAAGGATTGGTCCTGCTGGTGCACATTTGGACTGAAGTAAATGTTTGTGTAAGTCTTGTAATAAGAGTGAGATTTACAACCCGTTGTGTTAAAAGTTGAATTATTGAATACTTGAATGGAACAGCCCCGAAGTGGAGTGGATAATTATAGAGGCTTCATTTAGTTGACACCAGTTAGTTTATTTTTGTTATTGTATAGTTCTGCTGCATTTATCAAGATGAGAGCATTTTGTGTAACAAGAACTATATAAATGTCTTGCTAAAGTGGGAGAATATAGTTTGTTAATCTTGGTTCTAGAGTACCTTGACCCTTGGCTCAACGATTAGTTTTATCTTACACAAGTATTGGTTTCAGATATGATTCTATTTGACTTACTCAACTTTAATGCACCAGCTACATTGTATTATCCTCACTAGTGCATGTCATATTTATTATTGTAGTGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAGGTATGACGTTTTTTGGCTGAATTAAGATTTCATTTTTCTGCTTCAAAAGGAAAAAAAATGAAGAAGTTTGCAGGAAGAGTTCTTCTGTAATGCAATACTTATTTTTTGTCTGACTTAATATCTATGGATAATCTTCAACATTAATGGAAGAATCTGTATCTAACTCATATAAAGGGGCTTAGTATCTATTGAGAATCATCAACATCGACAGGCTTAATGGAAAAATCTGTATTTAACTCATGAAAAAGACTACTCTCAATTATCTATCCATGTGGTTGATAGGGTGTCAAAGAAATAAGTGAAGTTTCTTTTTTGGAACTTTGGAAAAAATTCAGTTATGTTGTACGAAATGCATAATGCCTAGGTTCATCTCTTGATGACATTTTTTGATCGTTTTGGTAGTGTTATGCATCCACTGTTCATACACCTTTTGTCCTCCTATCCTTTCTTTAACTTAATTTTTAAATTAACACTGTTTTAGTTTGTAATATTGTGCTTTATACGGAAAAAAAGAAAAGAATATACATGCTTTTGACTTGACATTAGCGGTATCGTGTAGATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCT</genome_strand>
        <mrna_strand>GAGAGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E307875" ref_strand="+" ref_description="SGN-E307875 [cLEY-20-C2]">
      <seq>gagcaaaaagctttcccaatctatggctttttcctaaaaatggtgtgtgagtaaagtagtgttattgctctggcggttgcatcaaacagaagcggggcccaattccttcgttgcatctacccagcctgcgtcttctttgttgtcccttttccgaaatccgatacctttatcaataactcttcagtctctgatttccggataaaccatgtccaaagctcgagtatacaccgatatcaatgtgcttcgtcctagggaatattgggattacgaatcgctaactgttcaatggggtgatcaggatgactatgaggttgttcgaaaagttggaagaggaaaatacagtgaagtttttgaaggtataaatgttaacagcagggagaagtgcataatcaagatcctgaaacctgttaagaagaaaaagatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="84809" stop="87007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85109" g_stop="85399" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85400" i_stop="86575" i_length="1176">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86576" g_stop="86705" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="421" r_length="130" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E307875" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307875" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85109" e_stop="85399"/>
          <exon e_start="86576" e_stop="86705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGGGTAAATATTTTCCCTTATTTAACCCTAATCGCTTTTGATTTTGTTTTTAGTTTTGGGGGTTTGTATACTGGATAATAGATTGAAATTCTTGAATTAGATGCTGTTTATTACCTTTTTTTAAAAAGATTGTTTGGTAAAATAATAACATCCACTTCTAGCATCCAAGAAAATAGTTTTTGCTTATGTTTCCTTGTTTTTTCCGTCTGAAGTAAAAAGTGGGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGGTATGTTTCCTTGTTTTTTTCGTCTGAAAGAAAAGTGGGTGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGTTATGTTTCCTTTTTTAAAGATAAGTGGAGGTTACATAGCATTGTAACATCCACTCCAGGGGTGGGTGAAACCTGAAAACAAATGTTGGGTTTCTTATTCCTATTTTTTGTCTAATAGATAATTGTGTGATCAGTGTTAGATGCTATTTTGGCGAATTCCTGCTATCTTGAATGGAATGACTTTCACATTGGAAAATACCTATTGGGTTAATGCAAAACTCCTGTCTAGTCTTGTTGAACTGAGTCTGTATTTTGTGGCTCCAGATTAGGTTGGGCTTCAAGTCTTTATATGTTTGTTACTTCTATATTAGCTTCCACATGATACAATGGAAGCTAAATAACAAATATAATATACCAATTAGTTGAGTTATATACCAATTTGTTGAGTTTAAGGATTGGTCCTGCTGGTGCACATTTGGACTGAAGTAAATGTTTGTGTAAGTCTTGTAATAAGAGTGAGATTTACAACCCGTTGTGTTAAAAGTTGAATTATTGAATACTTGAATGGAACAGCCCCGAAGTGGAGTGGATAATTATAGAGGCTTCATTTAGTTGACACCAGTTAGTTTATTTTTGTTATTGTATAGTTCTGCTGCATTTATCAAGATGAGAGCATTTTGTGTAACAAGAACTATATAAATGTCTTGCTAAAGTGGGAGAATATAGTTTGTTAATCTTGGTTCTAGAGTACCTTGACCCTTGGCTCAACGATTAGTTTTATCTTACACAAGTATTGGTTTCAGATATGATTCTATTTGACTTACTCAACTTTAATGCACCAGCTACATTGTATTATCCTCACTAGTGCATGTCATATTTATTATTGTAGTGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAG</genome_strand>
        <mrna_strand>GAGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E266393" ref_strand="+" ref_description="SGN-E266393 [cLEI-3-K16]">
      <seq>agcaaaaagctttcccaatctatggctttttcctaaaaatggtgtgtgagtaaagtagtgttattgctctggcggttgcatcaaacagaagcggggcccaattccttcgttgcatctacccagcctgcgtcttctttgttgtcccttttccgaaatccgatacctttatcaataactcttcagtctctgatttccggataaaccatgtccaaagctcgagtatacaccgatatcaatgtgcttcgtcctagggaatattgggattacgaatcgctaactgttcaatggggtgatcaggatgactatgaggttgttcgaaaagttggaagaggaaaatacagtgaagtttttgaaggtataaatgttaacagcagggagaagtgcataatcaagatcctgaaacctgttaagaagaaaaagatcaaaagagagataaagatattgcaaaatctctgtggtggaccaaatattgtcaaactccttgatatcgtcagagatcagcattcaaaaactccaagcttgatttttgagtacgtgaacagcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="84810" stop="87689"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85110" g_stop="85399" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85400" i_stop="86575" i_length="1176">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86576" g_stop="86705" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="420" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86706" i_stop="87264" i_length="559">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.273" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87265" g_stop="87389" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="545" r_length="125" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E266393" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85110" e_stop="85399"/>
          <exon e_start="86576" e_stop="86705"/>
          <exon e_start="87265" e_stop="87389"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGGGTAAATATTTTCCCTTATTTAACCCTAATCGCTTTTGATTTTGTTTTTAGTTTTGGGGGTTTGTATACTGGATAATAGATTGAAATTCTTGAATTAGATGCTGTTTATTACCTTTTTTTAAAAAGATTGTTTGGTAAAATAATAACATCCACTTCTAGCATCCAAGAAAATAGTTTTTGCTTATGTTTCCTTGTTTTTTCCGTCTGAAGTAAAAAGTGGGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGGTATGTTTCCTTGTTTTTTTCGTCTGAAAGAAAAGTGGGTGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGTTATGTTTCCTTTTTTAAAGATAAGTGGAGGTTACATAGCATTGTAACATCCACTCCAGGGGTGGGTGAAACCTGAAAACAAATGTTGGGTTTCTTATTCCTATTTTTTGTCTAATAGATAATTGTGTGATCAGTGTTAGATGCTATTTTGGCGAATTCCTGCTATCTTGAATGGAATGACTTTCACATTGGAAAATACCTATTGGGTTAATGCAAAACTCCTGTCTAGTCTTGTTGAACTGAGTCTGTATTTTGTGGCTCCAGATTAGGTTGGGCTTCAAGTCTTTATATGTTTGTTACTTCTATATTAGCTTCCACATGATACAATGGAAGCTAAATAACAAATATAATATACCAATTAGTTGAGTTATATACCAATTTGTTGAGTTTAAGGATTGGTCCTGCTGGTGCACATTTGGACTGAAGTAAATGTTTGTGTAAGTCTTGTAATAAGAGTGAGATTTACAACCCGTTGTGTTAAAAGTTGAATTATTGAATACTTGAATGGAACAGCCCCGAAGTGGAGTGGATAATTATAGAGGCTTCATTTAGTTGACACCAGTTAGTTTATTTTTGTTATTGTATAGTTCTGCTGCATTTATCAAGATGAGAGCATTTTGTGTAACAAGAACTATATAAATGTCTTGCTAAAGTGGGAGAATATAGTTTGTTAATCTTGGTTCTAGAGTACCTTGACCCTTGGCTCAACGATTAGTTTTATCTTACACAAGTATTGGTTTCAGATATGATTCTATTTGACTTACTCAACTTTAATGCACCAGCTACATTGTATTATCCTCACTAGTGCATGTCATATTTATTATTGTAGTGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAGGTATGACGTTTTTTGGCTGAATTAAGATTTCATTTTTCTGCTTCAAAAGGAAAAAAAATGAAGAAGTTTGCAGGAAGAGTTCTTCTGTAATGCAATACTTATTTTTTGTCTGACTTAATATCTATGGATAATCTTCAACATTAATGGAAGAATCTGTATCTAACTCATATAAAGGGGCTTAGTATCTATTGAGAATCATCAACATCGACAGGCTTAATGGAAAAATCTGTATTTAACTCATGAAAAAGACTACTCTCAATTATCTATCCATGTGGTTGATAGGGTGTCAAAGAAATAAGTGAAGTTTCTTTTTTGGAACTTTGGAAAAAATTCAGTTATGTTGTACGAAATGCATAATGCCTAGGTTCATCTCTTGATGACATTTTTTGATCGTTTTGGTAGTGTTATGCATCCACTGTTCATACACCTTTTGTCCTCCTATCCTTTCTTTAACTTAATTTTTAAATTAACACTGTTTTAGTTTGTAATATTGTGCTTTATACGGAAAAAAAGAAAAGAATATACATGCTTTTGACTTGACATTAGCGGTATCGTGTAGATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCAC</genome_strand>
        <mrna_strand>AGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E321071" ref_strand="+" ref_description="SGN-E321071 [cTOB-13-E3]">
      <seq>aaaaagctttcccaatctatggctttttcctaaaaatggtgtgtgagtaaagtagtgttattgctctggcggttgcatcaaacagaagcggggcccaattccttcgttgcatctacccagcctgcgtcttctttgttgtcccttttccgaaatccgatacctttatcaataactcttcagtctctgatttccggataaaccatgtccaaagctcgagtatacaccgatatcaatgtgcttcgtcctagggaatattgggattacgaatcgctaactgttcaatggggtgatcaggatgactatgaggttgttcgaaaagttggaagaggaaaatacagtgaagtttttgaaggtataaatgttaacagcagggagaagtgcataatcaagatcctgaaacctgttaagaagaaaaagatcaaaagagagataaagatattgcaaaatctctgtggtggaccaaatattgtcaaactccttgatatcgtcagagatcagcattcaaaaactccaagcttgatttttgagtacgtgaacagcacagatttcaaggttttgtacccaacgctaacagactatgacatacggtactacatatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="84813" stop="87747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85113" g_stop="85399" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85400" i_stop="86575" i_length="1176">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86576" g_stop="86705" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="417" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86706" i_stop="87264" i_length="559">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.273" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87265" g_stop="87447" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="600" r_length="183" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E321071" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321071" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85113" e_stop="85399"/>
          <exon e_start="86576" e_stop="86705"/>
          <exon e_start="87265" e_stop="87447"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGGGTAAATATTTTCCCTTATTTAACCCTAATCGCTTTTGATTTTGTTTTTAGTTTTGGGGGTTTGTATACTGGATAATAGATTGAAATTCTTGAATTAGATGCTGTTTATTACCTTTTTTTAAAAAGATTGTTTGGTAAAATAATAACATCCACTTCTAGCATCCAAGAAAATAGTTTTTGCTTATGTTTCCTTGTTTTTTCCGTCTGAAGTAAAAAGTGGGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGGTATGTTTCCTTGTTTTTTTCGTCTGAAAGAAAAGTGGGTGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGTTATGTTTCCTTTTTTAAAGATAAGTGGAGGTTACATAGCATTGTAACATCCACTCCAGGGGTGGGTGAAACCTGAAAACAAATGTTGGGTTTCTTATTCCTATTTTTTGTCTAATAGATAATTGTGTGATCAGTGTTAGATGCTATTTTGGCGAATTCCTGCTATCTTGAATGGAATGACTTTCACATTGGAAAATACCTATTGGGTTAATGCAAAACTCCTGTCTAGTCTTGTTGAACTGAGTCTGTATTTTGTGGCTCCAGATTAGGTTGGGCTTCAAGTCTTTATATGTTTGTTACTTCTATATTAGCTTCCACATGATACAATGGAAGCTAAATAACAAATATAATATACCAATTAGTTGAGTTATATACCAATTTGTTGAGTTTAAGGATTGGTCCTGCTGGTGCACATTTGGACTGAAGTAAATGTTTGTGTAAGTCTTGTAATAAGAGTGAGATTTACAACCCGTTGTGTTAAAAGTTGAATTATTGAATACTTGAATGGAACAGCCCCGAAGTGGAGTGGATAATTATAGAGGCTTCATTTAGTTGACACCAGTTAGTTTATTTTTGTTATTGTATAGTTCTGCTGCATTTATCAAGATGAGAGCATTTTGTGTAACAAGAACTATATAAATGTCTTGCTAAAGTGGGAGAATATAGTTTGTTAATCTTGGTTCTAGAGTACCTTGACCCTTGGCTCAACGATTAGTTTTATCTTACACAAGTATTGGTTTCAGATATGATTCTATTTGACTTACTCAACTTTAATGCACCAGCTACATTGTATTATCCTCACTAGTGCATGTCATATTTATTATTGTAGTGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAGGTATGACGTTTTTTGGCTGAATTAAGATTTCATTTTTCTGCTTCAAAAGGAAAAAAAATGAAGAAGTTTGCAGGAAGAGTTCTTCTGTAATGCAATACTTATTTTTTGTCTGACTTAATATCTATGGATAATCTTCAACATTAATGGAAGAATCTGTATCTAACTCATATAAAGGGGCTTAGTATCTATTGAGAATCATCAACATCGACAGGCTTAATGGAAAAATCTGTATTTAACTCATGAAAAAGACTACTCTCAATTATCTATCCATGTGGTTGATAGGGTGTCAAAGAAATAAGTGAAGTTTCTTTTTTGGAACTTTGGAAAAAATTCAGTTATGTTGTACGAAATGCATAATGCCTAGGTTCATCTCTTGATGACATTTTTTGATCGTTTTGGTAGTGTTATGCATCCACTGTTCATACACCTTTTGTCCTCCTATCCTTTCTTTAACTTAATTTTTAAATTAACACTGTTTTAGTTTGTAATATTGTGCTTTATACGGAAAAAAAGAAAAGAATATACATGCTTTTGACTTGACATTAGCGGTATCGTGTAGATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATAT</genome_strand>
        <mrna_strand>AAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E359227" ref_strand="+" ref_description="SGN-E359227 [cLHT-11-D16]">
      <seq>aaaaagctttcccaatatatggctttttcctaaaaatggtgtgtgagtaaagtagtgttattgctctggcggttgcgtcaaacagaagcggggcccaattcctcctccgcatctacccagcctgcgtctcctttgttgccccttttccgaaatccgataccttaatcaacaactcttcagtctctgatttccggataaaccatgtctaaagctcgagtatacaccgacatcaatgtgcttcgtcctagggaatattgggattacgaatcgctaactgttcaatggggtgatcaggatgactatgaggttgttcggaaagttggaagaggaaaatacagtgaagtttttgaaggtataaatgttaacagcagggagaagtgcataatcaagatcctgaaacctgttaagaagaaaaagatcaaaagagagataaagatattgcaaaatctctgtggtggaccaaatattgtcaaactccttgatatcgtcagagatcagcattcaaaaactccaagcttgatttttgagtacgtgaatagcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="84813" stop="87690"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85113" g_stop="85399" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85400" i_stop="86575" i_length="1176">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86576" g_stop="86705" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="417" r_length="130" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86706" i_stop="87264" i_length="559">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.273" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87265" g_stop="87390" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="543" r_length="126" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E359227" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85113" e_stop="85399"/>
          <exon e_start="86576" e_stop="86705"/>
          <exon e_start="87265" e_stop="87390"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGGGTAAATATTTTCCCTTATTTAACCCTAATCGCTTTTGATTTTGTTTTTAGTTTTGGGGGTTTGTATACTGGATAATAGATTGAAATTCTTGAATTAGATGCTGTTTATTACCTTTTTTTAAAAAGATTGTTTGGTAAAATAATAACATCCACTTCTAGCATCCAAGAAAATAGTTTTTGCTTATGTTTCCTTGTTTTTTCCGTCTGAAGTAAAAAGTGGGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGGTATGTTTCCTTGTTTTTTTCGTCTGAAAGAAAAGTGGGTGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGTTATGTTTCCTTTTTTAAAGATAAGTGGAGGTTACATAGCATTGTAACATCCACTCCAGGGGTGGGTGAAACCTGAAAACAAATGTTGGGTTTCTTATTCCTATTTTTTGTCTAATAGATAATTGTGTGATCAGTGTTAGATGCTATTTTGGCGAATTCCTGCTATCTTGAATGGAATGACTTTCACATTGGAAAATACCTATTGGGTTAATGCAAAACTCCTGTCTAGTCTTGTTGAACTGAGTCTGTATTTTGTGGCTCCAGATTAGGTTGGGCTTCAAGTCTTTATATGTTTGTTACTTCTATATTAGCTTCCACATGATACAATGGAAGCTAAATAACAAATATAATATACCAATTAGTTGAGTTATATACCAATTTGTTGAGTTTAAGGATTGGTCCTGCTGGTGCACATTTGGACTGAAGTAAATGTTTGTGTAAGTCTTGTAATAAGAGTGAGATTTACAACCCGTTGTGTTAAAAGTTGAATTATTGAATACTTGAATGGAACAGCCCCGAAGTGGAGTGGATAATTATAGAGGCTTCATTTAGTTGACACCAGTTAGTTTATTTTTGTTATTGTATAGTTCTGCTGCATTTATCAAGATGAGAGCATTTTGTGTAACAAGAACTATATAAATGTCTTGCTAAAGTGGGAGAATATAGTTTGTTAATCTTGGTTCTAGAGTACCTTGACCCTTGGCTCAACGATTAGTTTTATCTTACACAAGTATTGGTTTCAGATATGATTCTATTTGACTTACTCAACTTTAATGCACCAGCTACATTGTATTATCCTCACTAGTGCATGTCATATTTATTATTGTAGTGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAGGTATGACGTTTTTTGGCTGAATTAAGATTTCATTTTTCTGCTTCAAAAGGAAAAAAAATGAAGAAGTTTGCAGGAAGAGTTCTTCTGTAATGCAATACTTATTTTTTGTCTGACTTAATATCTATGGATAATCTTCAACATTAATGGAAGAATCTGTATCTAACTCATATAAAGGGGCTTAGTATCTATTGAGAATCATCAACATCGACAGGCTTAATGGAAAAATCTGTATTTAACTCATGAAAAAGACTACTCTCAATTATCTATCCATGTGGTTGATAGGGTGTCAAAGAAATAAGTGAAGTTTCTTTTTTGGAACTTTGGAAAAAATTCAGTTATGTTGTACGAAATGCATAATGCCTAGGTTCATCTCTTGATGACATTTTTTGATCGTTTTGGTAGTGTTATGCATCCACTGTTCATACACCTTTTGTCCTCCTATCCTTTCTTTAACTTAATTTTTAAATTAACACTGTTTTAGTTTGTAATATTGTGCTTTATACGGAAAAAAAGAAAAGAATATACATGCTTTTGACTTGACATTAGCGGTATCGTGTAGATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACA</genome_strand>
        <mrna_strand>AAAAAGCTTTCCCAATATATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCGTCAAACAGAAGCGGGGCCCAATTCCTCCTCCGCATCTACCCAGCCTGCGTCTCCTTTGTTGCCCCTTTTCCGAAATCCGATACCTTAATCAACAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCTAAAGCTCGAGTATACACCGACATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAATAGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E330170" ref_strand="+" ref_description="SGN-E330170 [cTOD-5-J10]">
      <seq>aaaaagctttcccaatctatggctttttcctaaaaatggtgtgtgagtaaagtagtgttattgctctggcggttgcatcaaacagaagcggggcccaattccttcgttgcatctacccagcctgcgtcttctttgttgtcccttttccgaaatccgatacctttatcaataactcttcagtctctgatttccggataaaccatgtccaaagctcgagtatacaccgatatcaatgtgcttcgtcctaaggaatattgggattacgaatcgctaactgttcaatggggtgatcaggatgactatgaggttgttcgaaaagttggaagaggaaaatacagtgaagtttttgaaggtataaatgttaacagcagggagaagtgcataatcaagatcctgaaacctgttaagaagaaaaagatcaaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="84813" stop="87007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85113" g_stop="85399" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85400" i_stop="86575" i_length="1176">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86576" g_stop="86705" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="417" r_length="130" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E330170" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330170" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85113" e_stop="85399"/>
          <exon e_start="86576" e_stop="86705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGGGTAAATATTTTCCCTTATTTAACCCTAATCGCTTTTGATTTTGTTTTTAGTTTTGGGGGTTTGTATACTGGATAATAGATTGAAATTCTTGAATTAGATGCTGTTTATTACCTTTTTTTAAAAAGATTGTTTGGTAAAATAATAACATCCACTTCTAGCATCCAAGAAAATAGTTTTTGCTTATGTTTCCTTGTTTTTTCCGTCTGAAGTAAAAAGTGGGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGGTATGTTTCCTTGTTTTTTTCGTCTGAAAGAAAAGTGGGTGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGTTATGTTTCCTTTTTTAAAGATAAGTGGAGGTTACATAGCATTGTAACATCCACTCCAGGGGTGGGTGAAACCTGAAAACAAATGTTGGGTTTCTTATTCCTATTTTTTGTCTAATAGATAATTGTGTGATCAGTGTTAGATGCTATTTTGGCGAATTCCTGCTATCTTGAATGGAATGACTTTCACATTGGAAAATACCTATTGGGTTAATGCAAAACTCCTGTCTAGTCTTGTTGAACTGAGTCTGTATTTTGTGGCTCCAGATTAGGTTGGGCTTCAAGTCTTTATATGTTTGTTACTTCTATATTAGCTTCCACATGATACAATGGAAGCTAAATAACAAATATAATATACCAATTAGTTGAGTTATATACCAATTTGTTGAGTTTAAGGATTGGTCCTGCTGGTGCACATTTGGACTGAAGTAAATGTTTGTGTAAGTCTTGTAATAAGAGTGAGATTTACAACCCGTTGTGTTAAAAGTTGAATTATTGAATACTTGAATGGAACAGCCCCGAAGTGGAGTGGATAATTATAGAGGCTTCATTTAGTTGACACCAGTTAGTTTATTTTTGTTATTGTATAGTTCTGCTGCATTTATCAAGATGAGAGCATTTTGTGTAACAAGAACTATATAAATGTCTTGCTAAAGTGGGAGAATATAGTTTGTTAATCTTGGTTCTAGAGTACCTTGACCCTTGGCTCAACGATTAGTTTTATCTTACACAAGTATTGGTTTCAGATATGATTCTATTTGACTTACTCAACTTTAATGCACCAGCTACATTGTATTATCCTCACTAGTGCATGTCATATTTATTATTGTAGTGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAG</genome_strand>
        <mrna_strand>AAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAAGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E300806" ref_strand="+" ref_description="SGN-E300806 [cLEW-8-E20]">
      <seq>aaaagctttcccaatctatggctttttcctaaaaatggtgtgtgagtaaagtcgtgttattgctctggcggatgcatcaaacagaagcggggcccaattccttcgttgcatctacccagcctgcgtcttctttgttgtcccttttccgaaatccgatacctttatcaataactcttcagtctctgatttccggataaaccatgtccaaagctcgagtatacaccgatatcaatgtgcttcgtcctagggaatattgggattacgaatcgctaactgttcaatggggtgatcaggatgactatgaggttgttcgaaaagttggaagaggaaaatacagtgaagtttttgaaggtataaatgttaacagcagggagaagtgcataatcaagatcctgaaacctgtttagaagaataagatcaaacgagagataaagatattgcaaaatctctgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="84814" stop="87601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85114" g_stop="85399" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85400" i_stop="86575" i_length="1176">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86576" g_stop="86705" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="416" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86706" i_stop="87264" i_length="559">
            <donor d_prob="0.975" d_score="0.96"/>
            <acceptor a_prob="0.273" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87265" g_stop="87301" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="453" r_length="37" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E300806" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85114" e_stop="85399"/>
          <exon e_start="86576" e_stop="86705"/>
          <exon e_start="87265" e_stop="87301"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGGGTAAATATTTTCCCTTATTTAACCCTAATCGCTTTTGATTTTGTTTTTAGTTTTGGGGGTTTGTATACTGGATAATAGATTGAAATTCTTGAATTAGATGCTGTTTATTACCTTTTTTTAAAAAGATTGTTTGGTAAAATAATAACATCCACTTCTAGCATCCAAGAAAATAGTTTTTGCTTATGTTTCCTTGTTTTTTCCGTCTGAAGTAAAAAGTGGGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGGTATGTTTCCTTGTTTTTTTCGTCTGAAAGAAAAGTGGGTGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGTTATGTTTCCTTTTTTAAAGATAAGTGGAGGTTACATAGCATTGTAACATCCACTCCAGGGGTGGGTGAAACCTGAAAACAAATGTTGGGTTTCTTATTCCTATTTTTTGTCTAATAGATAATTGTGTGATCAGTGTTAGATGCTATTTTGGCGAATTCCTGCTATCTTGAATGGAATGACTTTCACATTGGAAAATACCTATTGGGTTAATGCAAAACTCCTGTCTAGTCTTGTTGAACTGAGTCTGTATTTTGTGGCTCCAGATTAGGTTGGGCTTCAAGTCTTTATATGTTTGTTACTTCTATATTAGCTTCCACATGATACAATGGAAGCTAAATAACAAATATAATATACCAATTAGTTGAGTTATATACCAATTTGTTGAGTTTAAGGATTGGTCCTGCTGGTGCACATTTGGACTGAAGTAAATGTTTGTGTAAGTCTTGTAATAAGAGTGAGATTTACAACCCGTTGTGTTAAAAGTTGAATTATTGAATACTTGAATGGAACAGCCCCGAAGTGGAGTGGATAATTATAGAGGCTTCATTTAGTTGACACCAGTTAGTTTATTTTTGTTATTGTATAGTTCTGCTGCATTTATCAAGATGAGAGCATTTTGTGTAACAAGAACTATATAAATGTCTTGCTAAAGTGGGAGAATATAGTTTGTTAATCTTGGTTCTAGAGTACCTTGACCCTTGGCTCAACGATTAGTTTTATCTTACACAAGTATTGGTTTCAGATATGATTCTATTTGACTTACTCAACTTTAATGCACCAGCTACATTGTATTATCCTCACTAGTGCATGTCATATTTATTATTGTAGTGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAGGTATGACGTTTTTTGGCTGAATTAAGATTTCATTTTTCTGCTTCAAAAGGAAAAAAAATGAAGAAGTTTGCAGGAAGAGTTCTTCTGTAATGCAATACTTATTTTTTGTCTGACTTAATATCTATGGATAATCTTCAACATTAATGGAAGAATCTGTATCTAACTCATATAAAGGGGCTTAGTATCTATTGAGAATCATCAACATCGACAGGCTTAATGGAAAAATCTGTATTTAACTCATGAAAAAGACTACTCTCAATTATCTATCCATGTGGTTGATAGGGTGTCAAAGAAATAAGTGAAGTTTCTTTTTTGGAACTTTGGAAAAAATTCAGTTATGTTGTACGAAATGCATAATGCCTAGGTTCATCTCTTGATGACATTTTTTGATCGTTTTGGTAGTGTTATGCATCCACTGTTCATACACCTTTTGTCCTCCTATCCTTTCTTTAACTTAATTTTTAAATTAACACTGTTTTAGTTTGTAATATTGTGCTTTATACGGAAAAAAAGAAAAGAATATACATGCTTTTGACTTGACATTAGCGGTATCGTGTAGATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTG</genome_strand>
        <mrna_strand>AAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTCGTGTTATTGCTCTGGCGGATGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTTAGAAGAATAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAACGAGAGATAAAGATATTGCAAAATCTCTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E692762" ref_strand="+" ref_description="SGN-E692762 [LH_Ea09I24]">
      <seq>cgtttttcccaatatatggctttttcctaaaaatggtgtgtgagtaaagtagcgttattgctctggcggttgcgccaaacagaagcggggcccaattcctcctccggatctacccagcctgggtctcctttgttgccccttttccgaaatccgataccttaatcaacaactcttcagcctctgatgtccggataaaccatgtctaaagctcgagtatacaccgacatcaatgtgcttcgtcctagggaatattgggattacgaatcgctaactgttcaatggggtgatcaggatgactatgaggttgttcggaaagttggaagaggaaaatacagggaagtttttgaaggtataaatgttaacagcagggagaagtgcataatcaagatcctgaaacctgttaagaataaaaatatcgaaagagagataaagatattgcaaaatctctgtggtggaccagatattggcaaactccttgatatcgtcagagatcagcattcaaaaactccaagcttgatttttgagttcgtgaacagcacagatttcaaggatttgtatccaacgctaacagactatgacatacggtactacatatatgagcttctcaaggcactacattattgccattcacatggaataatgcatagggatgtccagcctcataacgttgtgatagaccatgaactgcggaagcttcgcttgatagattggggtcttgctgaattttaccacccagggaaggaatataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="84820" stop="89380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85116" g_stop="85399" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85400" i_stop="86575" i_length="1176">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86576" g_stop="86705" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="414" r_length="130" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86706" i_stop="87264" i_length="559">
            <donor d_prob="0.975" d_score="0.96"/>
            <acceptor a_prob="0.273" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87265" g_stop="87459" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="609" r_length="195" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87460" i_stop="88939" i_length="1480">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88940" g_stop="89080" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="750" r_length="141" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E692762" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>750</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E692762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85116" e_stop="85399"/>
          <exon e_start="86576" e_stop="86705"/>
          <exon e_start="87265" e_stop="87459"/>
          <exon e_start="88940" e_stop="89080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGGGTAAATATTTTCCCTTATTTAACCCTAATCGCTTTTGATTTTGTTTTTAGTTTTGGGGGTTTGTATACTGGATAATAGATTGAAATTCTTGAATTAGATGCTGTTTATTACCTTTTTTTAAAAAGATTGTTTGGTAAAATAATAACATCCACTTCTAGCATCCAAGAAAATAGTTTTTGCTTATGTTTCCTTGTTTTTTCCGTCTGAAGTAAAAAGTGGGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGGTATGTTTCCTTGTTTTTTTCGTCTGAAAGAAAAGTGGGTGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGTTATGTTTCCTTTTTTAAAGATAAGTGGAGGTTACATAGCATTGTAACATCCACTCCAGGGGTGGGTGAAACCTGAAAACAAATGTTGGGTTTCTTATTCCTATTTTTTGTCTAATAGATAATTGTGTGATCAGTGTTAGATGCTATTTTGGCGAATTCCTGCTATCTTGAATGGAATGACTTTCACATTGGAAAATACCTATTGGGTTAATGCAAAACTCCTGTCTAGTCTTGTTGAACTGAGTCTGTATTTTGTGGCTCCAGATTAGGTTGGGCTTCAAGTCTTTATATGTTTGTTACTTCTATATTAGCTTCCACATGATACAATGGAAGCTAAATAACAAATATAATATACCAATTAGTTGAGTTATATACCAATTTGTTGAGTTTAAGGATTGGTCCTGCTGGTGCACATTTGGACTGAAGTAAATGTTTGTGTAAGTCTTGTAATAAGAGTGAGATTTACAACCCGTTGTGTTAAAAGTTGAATTATTGAATACTTGAATGGAACAGCCCCGAAGTGGAGTGGATAATTATAGAGGCTTCATTTAGTTGACACCAGTTAGTTTATTTTTGTTATTGTATAGTTCTGCTGCATTTATCAAGATGAGAGCATTTTGTGTAACAAGAACTATATAAATGTCTTGCTAAAGTGGGAGAATATAGTTTGTTAATCTTGGTTCTAGAGTACCTTGACCCTTGGCTCAACGATTAGTTTTATCTTACACAAGTATTGGTTTCAGATATGATTCTATTTGACTTACTCAACTTTAATGCACCAGCTACATTGTATTATCCTCACTAGTGCATGTCATATTTATTATTGTAGTGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAGGTATGACGTTTTTTGGCTGAATTAAGATTTCATTTTTCTGCTTCAAAAGGAAAAAAAATGAAGAAGTTTGCAGGAAGAGTTCTTCTGTAATGCAATACTTATTTTTTGTCTGACTTAATATCTATGGATAATCTTCAACATTAATGGAAGAATCTGTATCTAACTCATATAAAGGGGCTTAGTATCTATTGAGAATCATCAACATCGACAGGCTTAATGGAAAAATCTGTATTTAACTCATGAAAAAGACTACTCTCAATTATCTATCCATGTGGTTGATAGGGTGTCAAAGAAATAAGTGAAGTTTCTTTTTTGGAACTTTGGAAAAAATTCAGTTATGTTGTACGAAATGCATAATGCCTAGGTTCATCTCTTGATGACATTTTTTGATCGTTTTGGTAGTGTTATGCATCCACTGTTCATACACCTTTTGTCCTCCTATCCTTTCTTTAACTTAATTTTTAAATTAACACTGTTTTAGTTTGTAATATTGTGCTTTATACGGAAAAAAAGAAAAGAATATACATGCTTTTGACTTGACATTAGCGGTATCGTGTAGATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAGGTAAGATGATAAACACATCAGATGGCAGTCAATATGGCTTTTATGTATTCATGCTCCCTCTCCCCTGATTCTTTTTTTTTTTTTTAAGGAAGGTAACAGTTATATACTTCCTGTCCTCTTGGTCCTCCTTTTCTGTATCTTCTTTCTTCTCTCAGAACCAAGAATAGAGTTGTACTGATGTCTTAACTTACTATCTGGTCAAAACTTTGTTTGTCTCCAACATTTCCTTCTATTGCAGCTTTTCAAGGTTTGTATGAGTATGAGAATTTTGGGAGTCCCCAGTTTTCTTATGCTCAGCAACTATTTCTGAATTGAGTGGATATATTCTCATATACTATGATCAAATTATGAGATCAAACTATCAAAGTTATAACTCCTAGGCTCATCTCAAGTGGAAATTTTGGAATCCAAGATTCTGGTGCCATAAAACTGCACTAATTTGGATTCATCTTATATCTATATTTAGATAATTGGGAGTCTGTCGAATGTGTCTCGTGATCTTGGGTTAGTGGGAATGACTAAGACTGTAAACTCATATTTGTTCACCTTATCCTGCCTGCCAATACATGGATTTCAAATCCATCATCAAAAATGTAGATTTTTCTTATTGATATTGTCAGCTCATTCACTGTCTTGGTCATTCCAATTGATTACCTTTCCTCTGCAATTCGGTCTAAGTATAGCTTCTGAATGTGTTTTTTACAAGGTAAATGACCTCATAGTGAGGTGCTTACCATGTCTCTTGTTATCAGATGATATGAATTAGATTCACTGCATGCCTATTGGAAGTTGATTTTATATCTAGATTAATGGCTATGCTCGTTGTTACTCTTAACAATGTGACATTTTTTTTCTGACTTTGGATTTCTTAAGTAACTCTCTTGTATTCTTCTGATCTTATAATTGGTTAAGGAAAAAAAATTCACCAATGCCATGGATATTCTCTCCTCTGTTTGCTAATTGCTATTTAAATTTCATTTTCCTTTTTCACGAGTAATATTATATTCCCTTTTTGTCTGATTTGCGTGAGAGTAACTATTTGGAAATGGGGATGCTAATTATTGGATCCTGTTGATTTCTATCTCGAAGTTAGTTCTTCCTTTTTGCTACATGCCTACATCACCAGCCTACCTGATCATATGTCTAGGTTTCCTTTCTTTTGCCTCCTCCTGCGAAAAAAAGAAAAGAAATTTAACTTCTCAAGCTTTCTCATTGTGTATCAGCATAATTGTTTGTCAAATGCTAGATCTGTTCCTGCATACTTACTTTCCATTCGCTTAATTTACTCTATTAATTTCCCCTTCTTTTTTGAAAGAAAAGAAAGAATCACGTTTTTGGCATGACTGCTGAATTTGCTGAGGCCTTCATTTCTTGTGACAGTTGTTTAATAGACTCTTTGGGACCTATTCTTTGTGTACATTTCTTGACATGCTTACCAATTTATGGAGGTCGAAAACTGAAACTTCTTATCAACCTGCAGGCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCCGAATTTTACCACCCAGGGAAGGAATATAAT</genome_strand>
        <mrna_strand>CGTTTTTCCCAATATATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGCGTTATTGCTCTGGCGGTTGCGCCAAACAGAAGCGGGGCCCAATTCCTCCTCCGGATCTACCCAGCCTGGGTCTCCTTTGTTGCCCCTTTTCCGAAATCCGATACCTTAATCAACAACTCTTCAGCCTCTGATGTCCGGATAAACCATGTCTAAAGCTCGAGTATACACCGACATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGAGGAAAATACAGGGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAATAAAAAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAGATATTGGCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTTCGTGAACAGCACAGATTTCAAGGATTTGTATCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTACATTATTGCCATTCACATGGAATAATGCATAGGGATGTCCAGCCTCATAACGTTGTGATAGACCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCTGAATTTTACCACCCAGGGAAGGAATATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E480408" ref_strand="+" ref_description="SGN-E480408 [cSTD-13-F16]">
      <seq>gtaaagtagtgttactgctctggcggttgcgtcaaacagaagctgggcccaattactcctccgcatctacccagcctgcgtcttctttgtgtccccttttccgaaatccgataccttaatcaacaactcttcagtctctgatttccgataaaaccatgtctaaagctcgagtatacaccgatatcaatgtgcttcgtcctagggaatattgggattacgaatcgctaactgttcaatggggtgatcaggatgactatgaggttgttcgaaaagttggaagaggaaaatacagtgaagtttttgaaggtataaatgttaacagcaacgagaagtgcataatcaagatcctgaaacctgttaagaagaaaaagatcaaaagagagataaagatattgcaaaacctctgtggtggaccaaacattgtcaaactccttgatatcgtcagagatcagcattcaaaaactccaagcttgatttttgagtacgtgaacagcacagatttcaaggttttgtacccaacgctaacagattacgacatacggtactacatatatgagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="84921" stop="87752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85159" g_stop="85399" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85400" i_stop="86575" i_length="1176">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86576" g_stop="86705" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="371" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86706" i_stop="87264" i_length="559">
            <donor d_prob="0.975" d_score="0.96"/>
            <acceptor a_prob="0.273" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87265" g_stop="87452" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="559" r_length="188" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E480408" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E480408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85159" e_stop="85399"/>
          <exon e_start="86576" e_stop="86705"/>
          <exon e_start="87265" e_stop="87452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGGGTAAATATTTTCCCTTATTTAACCCTAATCGCTTTTGATTTTGTTTTTAGTTTTGGGGGTTTGTATACTGGATAATAGATTGAAATTCTTGAATTAGATGCTGTTTATTACCTTTTTTTAAAAAGATTGTTTGGTAAAATAATAACATCCACTTCTAGCATCCAAGAAAATAGTTTTTGCTTATGTTTCCTTGTTTTTTCCGTCTGAAGTAAAAAGTGGGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGGTATGTTTCCTTGTTTTTTTCGTCTGAAAGAAAAGTGGGTGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGTTATGTTTCCTTTTTTAAAGATAAGTGGAGGTTACATAGCATTGTAACATCCACTCCAGGGGTGGGTGAAACCTGAAAACAAATGTTGGGTTTCTTATTCCTATTTTTTGTCTAATAGATAATTGTGTGATCAGTGTTAGATGCTATTTTGGCGAATTCCTGCTATCTTGAATGGAATGACTTTCACATTGGAAAATACCTATTGGGTTAATGCAAAACTCCTGTCTAGTCTTGTTGAACTGAGTCTGTATTTTGTGGCTCCAGATTAGGTTGGGCTTCAAGTCTTTATATGTTTGTTACTTCTATATTAGCTTCCACATGATACAATGGAAGCTAAATAACAAATATAATATACCAATTAGTTGAGTTATATACCAATTTGTTGAGTTTAAGGATTGGTCCTGCTGGTGCACATTTGGACTGAAGTAAATGTTTGTGTAAGTCTTGTAATAAGAGTGAGATTTACAACCCGTTGTGTTAAAAGTTGAATTATTGAATACTTGAATGGAACAGCCCCGAAGTGGAGTGGATAATTATAGAGGCTTCATTTAGTTGACACCAGTTAGTTTATTTTTGTTATTGTATAGTTCTGCTGCATTTATCAAGATGAGAGCATTTTGTGTAACAAGAACTATATAAATGTCTTGCTAAAGTGGGAGAATATAGTTTGTTAATCTTGGTTCTAGAGTACCTTGACCCTTGGCTCAACGATTAGTTTTATCTTACACAAGTATTGGTTTCAGATATGATTCTATTTGACTTACTCAACTTTAATGCACCAGCTACATTGTATTATCCTCACTAGTGCATGTCATATTTATTATTGTAGTGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAGGTATGACGTTTTTTGGCTGAATTAAGATTTCATTTTTCTGCTTCAAAAGGAAAAAAAATGAAGAAGTTTGCAGGAAGAGTTCTTCTGTAATGCAATACTTATTTTTTGTCTGACTTAATATCTATGGATAATCTTCAACATTAATGGAAGAATCTGTATCTAACTCATATAAAGGGGCTTAGTATCTATTGAGAATCATCAACATCGACAGGCTTAATGGAAAAATCTGTATTTAACTCATGAAAAAGACTACTCTCAATTATCTATCCATGTGGTTGATAGGGTGTCAAAGAAATAAGTGAAGTTTCTTTTTTGGAACTTTGGAAAAAATTCAGTTATGTTGTACGAAATGCATAATGCCTAGGTTCATCTCTTGATGACATTTTTTGATCGTTTTGGTAGTGTTATGCATCCACTGTTCATACACCTTTTGTCCTCCTATCCTTTCTTTAACTTAATTTTTAAATTAACACTGTTTTAGTTTGTAATATTGTGCTTTATACGGAAAAAAAGAAAAGAATATACATGCTTTTGACTTGACATTAGCGGTATCGTGTAGATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCT</genome_strand>
        <mrna_strand>GTAAAGTAGTGTTACTGCTCTGGCGGTTGCGTCAAACAGAAGCTGGGCCCAATTACTCCTCCGCATCTACCCAGCCTGCGTCTTCTTTGTGTCCCCTTTTCCGAAATCCGATACCTTAATCAACAACTCTTCAGTCTCTGATTTCCGATAAAACCATGTCTAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAACGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAAGAGAGATAAAGATATTGCAAAACCTCTGTGGTGGACCAAACATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGATTACGACATACGGTACTACATATATGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E480193" ref_strand="+" ref_description="SGN-E480193 [cSTD-13-G21]">
      <seq>gtaaagtagtgttactgctctggcggttgcgtcaaacagaagctgggcccaattactcctccgcatctacccagcctgcgtcttctttgtgtccccttttccgaaatccgataccttaatcaacaactcttcagtctctgatttccgataaaaccatgtctaaagctcgagtatacaccgatatcaatgtgcttcgtcctagggaatattgggattacgaatcgctaactgttcaatggggtgatcaggatgactatgaggttgttcgaaaagttggaagaggaaaatacagtgaagtttttgaaggtataaatgttaacagcaacgagaagtgcataatcaagatcctgaaacctgttaagaagaaaaagatcaaaagagaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="84921" stop="87007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85159" g_stop="85399" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85400" i_stop="86575" i_length="1176">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86576" g_stop="86705" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="371" r_length="130" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E480193" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E480193" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85159" e_stop="85399"/>
          <exon e_start="86576" e_stop="86705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGGGTAAATATTTTCCCTTATTTAACCCTAATCGCTTTTGATTTTGTTTTTAGTTTTGGGGGTTTGTATACTGGATAATAGATTGAAATTCTTGAATTAGATGCTGTTTATTACCTTTTTTTAAAAAGATTGTTTGGTAAAATAATAACATCCACTTCTAGCATCCAAGAAAATAGTTTTTGCTTATGTTTCCTTGTTTTTTCCGTCTGAAGTAAAAAGTGGGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGGTATGTTTCCTTGTTTTTTTCGTCTGAAAGAAAAGTGGGTGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGTTATGTTTCCTTTTTTAAAGATAAGTGGAGGTTACATAGCATTGTAACATCCACTCCAGGGGTGGGTGAAACCTGAAAACAAATGTTGGGTTTCTTATTCCTATTTTTTGTCTAATAGATAATTGTGTGATCAGTGTTAGATGCTATTTTGGCGAATTCCTGCTATCTTGAATGGAATGACTTTCACATTGGAAAATACCTATTGGGTTAATGCAAAACTCCTGTCTAGTCTTGTTGAACTGAGTCTGTATTTTGTGGCTCCAGATTAGGTTGGGCTTCAAGTCTTTATATGTTTGTTACTTCTATATTAGCTTCCACATGATACAATGGAAGCTAAATAACAAATATAATATACCAATTAGTTGAGTTATATACCAATTTGTTGAGTTTAAGGATTGGTCCTGCTGGTGCACATTTGGACTGAAGTAAATGTTTGTGTAAGTCTTGTAATAAGAGTGAGATTTACAACCCGTTGTGTTAAAAGTTGAATTATTGAATACTTGAATGGAACAGCCCCGAAGTGGAGTGGATAATTATAGAGGCTTCATTTAGTTGACACCAGTTAGTTTATTTTTGTTATTGTATAGTTCTGCTGCATTTATCAAGATGAGAGCATTTTGTGTAACAAGAACTATATAAATGTCTTGCTAAAGTGGGAGAATATAGTTTGTTAATCTTGGTTCTAGAGTACCTTGACCCTTGGCTCAACGATTAGTTTTATCTTACACAAGTATTGGTTTCAGATATGATTCTATTTGACTTACTCAACTTTAATGCACCAGCTACATTGTATTATCCTCACTAGTGCATGTCATATTTATTATTGTAGTGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAG</genome_strand>
        <mrna_strand>GTAAAGTAGTGTTACTGCTCTGGCGGTTGCGTCAAACAGAAGCTGGGCCCAATTACTCCTCCGCATCTACCCAGCCTGCGTCTTCTTTGTGTCCCCTTTTCCGAAATCCGATACCTTAATCAACAACTCTTCAGTCTCTGATTTCCGATAAAACCATGTCTAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAACGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E459725" ref_strand="+" ref_description="SGN-E459725 [cPRO-28-B14]">
      <seq>ccaatccatggctttttcctaaaagtgttgtgcgcgttctgtaagtaaagtagtgttactgctctggcggttgcgtcaaacagaagctgggcccaattactcctccgcatctacccagcctgcgtcttctttgtttccccttttccgaaatccgataccttaatcaacaactcttcagtctctgatttccgataaaaccatgtctaaagctcgagtatacaccgatatcaatgtgcttcgtcctagggaatattgggattacgaatcgctaactgttcaatggggtgatcaggatgactatgaggttgttcgaaaagttggaagaggaaaatacagtgaagtttttgaaggtataaatattaacagcaacgagaagtgcataatcaagatcctgaaacctgttaagaagaaaaagatcaaaagagagataaagatattgcaaaacctctgtggtggaccaaacattgtcaaactccttgatatcgtcagagatcagcattcaaaaactccaagcttgatttttgagtacgtgaacagcacagatttcaaggtttttgtacccaacactaacagattacgacatacggtactacatatatgagcttctncaggcactagattattgccattcacagggaaatatgcatagggatgtcaagcctcataacgntatgatagatcatgaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="84824" stop="89317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85160" g_stop="85399" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="285" r_length="240" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85400" i_stop="86575" i_length="1176">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86576" g_stop="86705" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="415" r_length="130" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86706" i_stop="87264" i_length="559">
            <donor d_prob="0.975" d_score="0.96"/>
            <acceptor a_prob="0.273" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87265" g_stop="87459" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="611" r_length="196" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87460" i_stop="88939" i_length="1480">
            <donor d_prob="0.989" d_score="0.90"/>
            <acceptor a_prob="0.992" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88940" g_stop="89017" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="689" r_length="78" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E459725" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E459725" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85160" e_stop="85399"/>
          <exon e_start="86576" e_stop="86705"/>
          <exon e_start="87265" e_stop="87459"/>
          <exon e_start="88940" e_stop="89017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGGGTAAATATTTTCCCTTATTTAACCCTAATCGCTTTTGATTTTGTTTTTAGTTTTGGGGGTTTGTATACTGGATAATAGATTGAAATTCTTGAATTAGATGCTGTTTATTACCTTTTTTTAAAAAGATTGTTTGGTAAAATAATAACATCCACTTCTAGCATCCAAGAAAATAGTTTTTGCTTATGTTTCCTTGTTTTTTCCGTCTGAAGTAAAAAGTGGGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGGTATGTTTCCTTGTTTTTTTCGTCTGAAAGAAAAGTGGGTGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGTTATGTTTCCTTTTTTAAAGATAAGTGGAGGTTACATAGCATTGTAACATCCACTCCAGGGGTGGGTGAAACCTGAAAACAAATGTTGGGTTTCTTATTCCTATTTTTTGTCTAATAGATAATTGTGTGATCAGTGTTAGATGCTATTTTGGCGAATTCCTGCTATCTTGAATGGAATGACTTTCACATTGGAAAATACCTATTGGGTTAATGCAAAACTCCTGTCTAGTCTTGTTGAACTGAGTCTGTATTTTGTGGCTCCAGATTAGGTTGGGCTTCAAGTCTTTATATGTTTGTTACTTCTATATTAGCTTCCACATGATACAATGGAAGCTAAATAACAAATATAATATACCAATTAGTTGAGTTATATACCAATTTGTTGAGTTTAAGGATTGGTCCTGCTGGTGCACATTTGGACTGAAGTAAATGTTTGTGTAAGTCTTGTAATAAGAGTGAGATTTACAACCCGTTGTGTTAAAAGTTGAATTATTGAATACTTGAATGGAACAGCCCCGAAGTGGAGTGGATAATTATAGAGGCTTCATTTAGTTGACACCAGTTAGTTTATTTTTGTTATTGTATAGTTCTGCTGCATTTATCAAGATGAGAGCATTTTGTGTAACAAGAACTATATAAATGTCTTGCTAAAGTGGGAGAATATAGTTTGTTAATCTTGGTTCTAGAGTACCTTGACCCTTGGCTCAACGATTAGTTTTATCTTACACAAGTATTGGTTTCAGATATGATTCTATTTGACTTACTCAACTTTAATGCACCAGCTACATTGTATTATCCTCACTAGTGCATGTCATATTTATTATTGTAGTGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAGGTATGACGTTTTTTGGCTGAATTAAGATTTCATTTTTCTGCTTCAAAAGGAAAAAAAATGAAGAAGTTTGCAGGAAGAGTTCTTCTGTAATGCAATACTTATTTTTTGTCTGACTTAATATCTATGGATAATCTTCAACATTAATGGAAGAATCTGTATCTAACTCATATAAAGGGGCTTAGTATCTATTGAGAATCATCAACATCGACAGGCTTAATGGAAAAATCTGTATTTAACTCATGAAAAAGACTACTCTCAATTATCTATCCATGTGGTTGATAGGGTGTCAAAGAAATAAGTGAAGTTTCTTTTTTGGAACTTTGGAAAAAATTCAGTTATGTTGTACGAAATGCATAATGCCTAGGTTCATCTCTTGATGACATTTTTTGATCGTTTTGGTAGTGTTATGCATCCACTGTTCATACACCTTTTGTCCTCCTATCCTTTCTTTAACTTAATTTTTAAATTAACACTGTTTTAGTTTGTAATATTGTGCTTTATACGGAAAAAAAGAAAAGAATATACATGCTTTTGACTTGACATTAGCGGTATCGTGTAGATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGG-TTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAGGTAAGATGATAAACACATCAGATGGCAGTCAATATGGCTTTTATGTATTCATGCTCCCTCTCCCCTGATTCTTTTTTTTTTTTTTAAGGAAGGTAACAGTTATATACTTCCTGTCCTCTTGGTCCTCCTTTTCTGTATCTTCTTTCTTCTCTCAGAACCAAGAATAGAGTTGTACTGATGTCTTAACTTACTATCTGGTCAAAACTTTGTTTGTCTCCAACATTTCCTTCTATTGCAGCTTTTCAAGGTTTGTATGAGTATGAGAATTTTGGGAGTCCCCAGTTTTCTTATGCTCAGCAACTATTTCTGAATTGAGTGGATATATTCTCATATACTATGATCAAATTATGAGATCAAACTATCAAAGTTATAACTCCTAGGCTCATCTCAAGTGGAAATTTTGGAATCCAAGATTCTGGTGCCATAAAACTGCACTAATTTGGATTCATCTTATATCTATATTTAGATAATTGGGAGTCTGTCGAATGTGTCTCGTGATCTTGGGTTAGTGGGAATGACTAAGACTGTAAACTCATATTTGTTCACCTTATCCTGCCTGCCAATACATGGATTTCAAATCCATCATCAAAAATGTAGATTTTTCTTATTGATATTGTCAGCTCATTCACTGTCTTGGTCATTCCAATTGATTACCTTTCCTCTGCAATTCGGTCTAAGTATAGCTTCTGAATGTGTTTTTTACAAGGTAAATGACCTCATAGTGAGGTGCTTACCATGTCTCTTGTTATCAGATGATATGAATTAGATTCACTGCATGCCTATTGGAAGTTGATTTTATATCTAGATTAATGGCTATGCTCGTTGTTACTCTTAACAATGTGACATTTTTTTTCTGACTTTGGATTTCTTAAGTAACTCTCTTGTATTCTTCTGATCTTATAATTGGTTAAGGAAAAAAAATTCACCAATGCCATGGATATTCTCTCCTCTGTTTGCTAATTGCTATTTAAATTTCATTTTCCTTTTTCACGAGTAATATTATATTCCCTTTTTGTCTGATTTGCGTGAGAGTAACTATTTGGAAATGGGGATGCTAATTATTGGATCCTGTTGATTTCTATCTCGAAGTTAGTTCTTCCTTTTTGCTACATGCCTACATCACCAGCCTACCTGATCATATGTCTAGGTTTCCTTTCTTTTGCCTCCTCCTGCGAAAAAAAGAAAAGAAATTTAACTTCTCAAGCTTTCTCATTGTGTATCAGCATAATTGTTTGTCAAATGCTAGATCTGTTCCTGCATACTTACTTTCCATTCGCTTAATTTACTCTATTAATTTCCCCTTCTTTTTTGAAAGAAAAGAAAGAATCACGTTTTTGGCATGACTGCTGAATTTGCTGAGGCCTTCATTTCTTGTGACAGTTGTTTAATAGACTCTTTGGGACCTATTCTTTGTGTACATTTCTTGACATGCTTACCAATTTATGGAGGTCGAAAACTGAAACTTCTTATCAACCTGCAGGCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTG</genome_strand>
        <mrna_strand>TAAAGTAGTGTTACTGCTCTGGCGGTTGCGTCAAACAGAAGCTGGGCCCAATTACTCCTCCGCATCTACCCAGCCTGCGTCTTCTTTGTTTCCCCTTTTCCGAAATCCGATACCTTAATCAACAACTCTTCAGTCTCTGATTTCCGATAAAACCATGTCTAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATATTAACAGCAACGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAAGAGAGATAAAGATATTGCAAAACCTCTGTGGTGGACCAAACATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTTGTACCCAACACTAACAGATTACGACATACGGTACTACATATATGAGCTTCTNCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTAGATTATTGCCATTCACAGGGAAATATGCATAGGGATGTCAAGCCTCATAACGNTATGATAGATCATGAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E485126" ref_strand="+" ref_description="SGN-E485126 [cSTE-16-L19]">
      <seq>gagagcaaaaagctttcccaatccatggctttttcctaaaagtgttgtgcgcgttctgtaagtaaagtagtgttactgctctggcggttgcgtcaaacagaagctgggcccaattactcctccgcatctacccagcctgcgtcttctttgtttccccttttccgaaatccgataccttaatcaacaactcttcagtctctgatttccgataaaaccatgtctaaagctcgagtatacaccgatatcaatgtgcttcgtcctagggaatattgggattacgaatcgctaactgttcaatggggtgatcaggatgactatgaggttgttcgaaaagttggaagaggaaaatacagtgaagtttttgaaggtataaatattaacagcaacgagaagtgcataatcaagatcctgaaacctgttaagaagaaaaagatcaaaagagagataaagatattgcaaaacctctgtggtggaccaaacattgtcaaactccttgatatcgtcagagatcagcattcaaaaactccaagcttgatttttgagtacgtgaacagcacagatttcaaggttttgtacccaacactaacagattacgacatacggtactacatatatgagcttctcaaggcactagattattgccattcacagggaataatgcatanggatgtcaagcctcataacgttatgatagatcatgaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="84807" stop="89317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85160" g_stop="85399" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="302" r_length="240" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85400" i_stop="86575" i_length="1176">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86576" g_stop="86705" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="432" r_length="130" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86706" i_stop="87264" i_length="559">
            <donor d_prob="0.975" d_score="0.96"/>
            <acceptor a_prob="0.273" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87265" g_stop="87459" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="627" r_length="195" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87460" i_stop="88939" i_length="1480">
            <donor d_prob="0.989" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88940" g_stop="89017" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="705" r_length="78" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E485126" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E485126" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85160" e_stop="85399"/>
          <exon e_start="86576" e_stop="86705"/>
          <exon e_start="87265" e_stop="87459"/>
          <exon e_start="88940" e_stop="89017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGGGTAAATATTTTCCCTTATTTAACCCTAATCGCTTTTGATTTTGTTTTTAGTTTTGGGGGTTTGTATACTGGATAATAGATTGAAATTCTTGAATTAGATGCTGTTTATTACCTTTTTTTAAAAAGATTGTTTGGTAAAATAATAACATCCACTTCTAGCATCCAAGAAAATAGTTTTTGCTTATGTTTCCTTGTTTTTTCCGTCTGAAGTAAAAAGTGGGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGGTATGTTTCCTTGTTTTTTTCGTCTGAAAGAAAAGTGGGTGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGTTATGTTTCCTTTTTTAAAGATAAGTGGAGGTTACATAGCATTGTAACATCCACTCCAGGGGTGGGTGAAACCTGAAAACAAATGTTGGGTTTCTTATTCCTATTTTTTGTCTAATAGATAATTGTGTGATCAGTGTTAGATGCTATTTTGGCGAATTCCTGCTATCTTGAATGGAATGACTTTCACATTGGAAAATACCTATTGGGTTAATGCAAAACTCCTGTCTAGTCTTGTTGAACTGAGTCTGTATTTTGTGGCTCCAGATTAGGTTGGGCTTCAAGTCTTTATATGTTTGTTACTTCTATATTAGCTTCCACATGATACAATGGAAGCTAAATAACAAATATAATATACCAATTAGTTGAGTTATATACCAATTTGTTGAGTTTAAGGATTGGTCCTGCTGGTGCACATTTGGACTGAAGTAAATGTTTGTGTAAGTCTTGTAATAAGAGTGAGATTTACAACCCGTTGTGTTAAAAGTTGAATTATTGAATACTTGAATGGAACAGCCCCGAAGTGGAGTGGATAATTATAGAGGCTTCATTTAGTTGACACCAGTTAGTTTATTTTTGTTATTGTATAGTTCTGCTGCATTTATCAAGATGAGAGCATTTTGTGTAACAAGAACTATATAAATGTCTTGCTAAAGTGGGAGAATATAGTTTGTTAATCTTGGTTCTAGAGTACCTTGACCCTTGGCTCAACGATTAGTTTTATCTTACACAAGTATTGGTTTCAGATATGATTCTATTTGACTTACTCAACTTTAATGCACCAGCTACATTGTATTATCCTCACTAGTGCATGTCATATTTATTATTGTAGTGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAGGTATGACGTTTTTTGGCTGAATTAAGATTTCATTTTTCTGCTTCAAAAGGAAAAAAAATGAAGAAGTTTGCAGGAAGAGTTCTTCTGTAATGCAATACTTATTTTTTGTCTGACTTAATATCTATGGATAATCTTCAACATTAATGGAAGAATCTGTATCTAACTCATATAAAGGGGCTTAGTATCTATTGAGAATCATCAACATCGACAGGCTTAATGGAAAAATCTGTATTTAACTCATGAAAAAGACTACTCTCAATTATCTATCCATGTGGTTGATAGGGTGTCAAAGAAATAAGTGAAGTTTCTTTTTTGGAACTTTGGAAAAAATTCAGTTATGTTGTACGAAATGCATAATGCCTAGGTTCATCTCTTGATGACATTTTTTGATCGTTTTGGTAGTGTTATGCATCCACTGTTCATACACCTTTTGTCCTCCTATCCTTTCTTTAACTTAATTTTTAAATTAACACTGTTTTAGTTTGTAATATTGTGCTTTATACGGAAAAAAAGAAAAGAATATACATGCTTTTGACTTGACATTAGCGGTATCGTGTAGATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAGGTAAGATGATAAACACATCAGATGGCAGTCAATATGGCTTTTATGTATTCATGCTCCCTCTCCCCTGATTCTTTTTTTTTTTTTTAAGGAAGGTAACAGTTATATACTTCCTGTCCTCTTGGTCCTCCTTTTCTGTATCTTCTTTCTTCTCTCAGAACCAAGAATAGAGTTGTACTGATGTCTTAACTTACTATCTGGTCAAAACTTTGTTTGTCTCCAACATTTCCTTCTATTGCAGCTTTTCAAGGTTTGTATGAGTATGAGAATTTTGGGAGTCCCCAGTTTTCTTATGCTCAGCAACTATTTCTGAATTGAGTGGATATATTCTCATATACTATGATCAAATTATGAGATCAAACTATCAAAGTTATAACTCCTAGGCTCATCTCAAGTGGAAATTTTGGAATCCAAGATTCTGGTGCCATAAAACTGCACTAATTTGGATTCATCTTATATCTATATTTAGATAATTGGGAGTCTGTCGAATGTGTCTCGTGATCTTGGGTTAGTGGGAATGACTAAGACTGTAAACTCATATTTGTTCACCTTATCCTGCCTGCCAATACATGGATTTCAAATCCATCATCAAAAATGTAGATTTTTCTTATTGATATTGTCAGCTCATTCACTGTCTTGGTCATTCCAATTGATTACCTTTCCTCTGCAATTCGGTCTAAGTATAGCTTCTGAATGTGTTTTTTACAAGGTAAATGACCTCATAGTGAGGTGCTTACCATGTCTCTTGTTATCAGATGATATGAATTAGATTCACTGCATGCCTATTGGAAGTTGATTTTATATCTAGATTAATGGCTATGCTCGTTGTTACTCTTAACAATGTGACATTTTTTTTCTGACTTTGGATTTCTTAAGTAACTCTCTTGTATTCTTCTGATCTTATAATTGGTTAAGGAAAAAAAATTCACCAATGCCATGGATATTCTCTCCTCTGTTTGCTAATTGCTATTTAAATTTCATTTTCCTTTTTCACGAGTAATATTATATTCCCTTTTTGTCTGATTTGCGTGAGAGTAACTATTTGGAAATGGGGATGCTAATTATTGGATCCTGTTGATTTCTATCTCGAAGTTAGTTCTTCCTTTTTGCTACATGCCTACATCACCAGCCTACCTGATCATATGTCTAGGTTTCCTTTCTTTTGCCTCCTCCTGCGAAAAAAAGAAAAGAAATTTAACTTCTCAAGCTTTCTCATTGTGTATCAGCATAATTGTTTGTCAAATGCTAGATCTGTTCCTGCATACTTACTTTCCATTCGCTTAATTTACTCTATTAATTTCCCCTTCTTTTTTGAAAGAAAAGAAAGAATCACGTTTTTGGCATGACTGCTGAATTTGCTGAGGCCTTCATTTCTTGTGACAGTTGTTTAATAGACTCTTTGGGACCTATTCTTTGTGTACATTTCTTGACATGCTTACCAATTTATGGAGGTCGAAAACTGAAACTTCTTATCAACCTGCAGGCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTG</genome_strand>
        <mrna_strand>TAAAGTAGTGTTACTGCTCTGGCGGTTGCGTCAAACAGAAGCTGGGCCCAATTACTCCTCCGCATCTACCCAGCCTGCGTCTTCTTTGTTTCCCCTTTTCCGAAATCCGATACCTTAATCAACAACTCTTCAGTCTCTGATTTCCGATAAAACCATGTCTAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATATTAACAGCAACGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAAGAGAGATAAAGATATTGCAAAACCTCTGTGGTGGACCAAACATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACACTAACAGATTACGACATACGGTACTACATATATGAGCTTCTCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTAGATTATTGCCATTCACAGGGAATAATGCATANGGATGTCAAGCCTCATAACGTTATGATAGATCATGAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E452419" ref_strand="+" ref_description="SGN-E452419 [cSTS-16-B22]">
      <seq>gtcaaacagaagctgggcccaattactcctccgcatctacccagcctgcgtcttctttgtgtccccttttccgaaatccgataccttaatcaacaactcttcagtctctgatttccgataaaaccatgtctaaagctcgagtatacaccgatatcaatgtgcttcgtcctagggaatattgggattacgaatcgctaactgttcaatggggtgatcaggatgactatgaggttgttcgaaaagttggaagaggaaaatacagtgaagtttttgaaggtataaatgttaacagcaacgagaagtgcataatcaagatcctgaaacctgttaagaagaaaaagatcaaaagagagataaagatattgcaaaacctctgtggtggaccaaacattgtcaaactccttgatatcgtcagagatcagcattcaaaaactccaagcttgatttttgagtacgtgaacagcacagatttcaaggttttgtacccaacgctaacagattacgacatacggtactacatatatgagcttctcaaggcactagattattgccattcacagggaataatgcatagggatgtcaagcctcataacgttatgatagatcatgaactgcggaagcttcgcttgatagattggggtcttgctgaattttaccacccagggaaggaatataatgttcgtgtggcttcaagatatttcaagggccctgaacttctagttgacttgcaagactacgactattctttggacatgtggagccttggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="84921" stop="90317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85189" g_stop="85399" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85400" i_stop="86575" i_length="1176">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86576" g_stop="86705" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="341" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86706" i_stop="87264" i_length="559">
            <donor d_prob="0.975" d_score="0.96"/>
            <acceptor a_prob="0.273" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87265" g_stop="87459" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="536" r_length="195" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87460" i_stop="88939" i_length="1480">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88940" g_stop="89097" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="694" r_length="158" r_score="0.975"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89098" i_stop="89943" i_length="846">
            <donor d_prob="0.568" d_score="0.98"/>
            <acceptor a_prob="0.911" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89944" g_stop="90017" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="695" r_stop="768" r_length="74" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E452419" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E452419" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85189" e_stop="85399"/>
          <exon e_start="86576" e_stop="86705"/>
          <exon e_start="87265" e_stop="87459"/>
          <exon e_start="88940" e_stop="89097"/>
          <exon e_start="89944" e_stop="90017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGGGTAAATATTTTCCCTTATTTAACCCTAATCGCTTTTGATTTTGTTTTTAGTTTTGGGGGTTTGTATACTGGATAATAGATTGAAATTCTTGAATTAGATGCTGTTTATTACCTTTTTTTAAAAAGATTGTTTGGTAAAATAATAACATCCACTTCTAGCATCCAAGAAAATAGTTTTTGCTTATGTTTCCTTGTTTTTTCCGTCTGAAGTAAAAAGTGGGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGGTATGTTTCCTTGTTTTTTTCGTCTGAAAGAAAAGTGGGTGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGTTATGTTTCCTTTTTTAAAGATAAGTGGAGGTTACATAGCATTGTAACATCCACTCCAGGGGTGGGTGAAACCTGAAAACAAATGTTGGGTTTCTTATTCCTATTTTTTGTCTAATAGATAATTGTGTGATCAGTGTTAGATGCTATTTTGGCGAATTCCTGCTATCTTGAATGGAATGACTTTCACATTGGAAAATACCTATTGGGTTAATGCAAAACTCCTGTCTAGTCTTGTTGAACTGAGTCTGTATTTTGTGGCTCCAGATTAGGTTGGGCTTCAAGTCTTTATATGTTTGTTACTTCTATATTAGCTTCCACATGATACAATGGAAGCTAAATAACAAATATAATATACCAATTAGTTGAGTTATATACCAATTTGTTGAGTTTAAGGATTGGTCCTGCTGGTGCACATTTGGACTGAAGTAAATGTTTGTGTAAGTCTTGTAATAAGAGTGAGATTTACAACCCGTTGTGTTAAAAGTTGAATTATTGAATACTTGAATGGAACAGCCCCGAAGTGGAGTGGATAATTATAGAGGCTTCATTTAGTTGACACCAGTTAGTTTATTTTTGTTATTGTATAGTTCTGCTGCATTTATCAAGATGAGAGCATTTTGTGTAACAAGAACTATATAAATGTCTTGCTAAAGTGGGAGAATATAGTTTGTTAATCTTGGTTCTAGAGTACCTTGACCCTTGGCTCAACGATTAGTTTTATCTTACACAAGTATTGGTTTCAGATATGATTCTATTTGACTTACTCAACTTTAATGCACCAGCTACATTGTATTATCCTCACTAGTGCATGTCATATTTATTATTGTAGTGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAGGTATGACGTTTTTTGGCTGAATTAAGATTTCATTTTTCTGCTTCAAAAGGAAAAAAAATGAAGAAGTTTGCAGGAAGAGTTCTTCTGTAATGCAATACTTATTTTTTGTCTGACTTAATATCTATGGATAATCTTCAACATTAATGGAAGAATCTGTATCTAACTCATATAAAGGGGCTTAGTATCTATTGAGAATCATCAACATCGACAGGCTTAATGGAAAAATCTGTATTTAACTCATGAAAAAGACTACTCTCAATTATCTATCCATGTGGTTGATAGGGTGTCAAAGAAATAAGTGAAGTTTCTTTTTTGGAACTTTGGAAAAAATTCAGTTATGTTGTACGAAATGCATAATGCCTAGGTTCATCTCTTGATGACATTTTTTGATCGTTTTGGTAGTGTTATGCATCCACTGTTCATACACCTTTTGTCCTCCTATCCTTTCTTTAACTTAATTTTTAAATTAACACTGTTTTAGTTTGTAATATTGTGCTTTATACGGAAAAAAAGAAAAGAATATACATGCTTTTGACTTGACATTAGCGGTATCGTGTAGATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAGGTAAGATGATAAACACATCAGATGGCAGTCAATATGGCTTTTATGTATTCATGCTCCCTCTCCCCTGATTCTTTTTTTTTTTTTTAAGGAAGGTAACAGTTATATACTTCCTGTCCTCTTGGTCCTCCTTTTCTGTATCTTCTTTCTTCTCTCAGAACCAAGAATAGAGTTGTACTGATGTCTTAACTTACTATCTGGTCAAAACTTTGTTTGTCTCCAACATTTCCTTCTATTGCAGCTTTTCAAGGTTTGTATGAGTATGAGAATTTTGGGAGTCCCCAGTTTTCTTATGCTCAGCAACTATTTCTGAATTGAGTGGATATATTCTCATATACTATGATCAAATTATGAGATCAAACTATCAAAGTTATAACTCCTAGGCTCATCTCAAGTGGAAATTTTGGAATCCAAGATTCTGGTGCCATAAAACTGCACTAATTTGGATTCATCTTATATCTATATTTAGATAATTGGGAGTCTGTCGAATGTGTCTCGTGATCTTGGGTTAGTGGGAATGACTAAGACTGTAAACTCATATTTGTTCACCTTATCCTGCCTGCCAATACATGGATTTCAAATCCATCATCAAAAATGTAGATTTTTCTTATTGATATTGTCAGCTCATTCACTGTCTTGGTCATTCCAATTGATTACCTTTCCTCTGCAATTCGGTCTAAGTATAGCTTCTGAATGTGTTTTTTACAAGGTAAATGACCTCATAGTGAGGTGCTTACCATGTCTCTTGTTATCAGATGATATGAATTAGATTCACTGCATGCCTATTGGAAGTTGATTTTATATCTAGATTAATGGCTATGCTCGTTGTTACTCTTAACAATGTGACATTTTTTTTCTGACTTTGGATTTCTTAAGTAACTCTCTTGTATTCTTCTGATCTTATAATTGGTTAAGGAAAAAAAATTCACCAATGCCATGGATATTCTCTCCTCTGTTTGCTAATTGCTATTTAAATTTCATTTTCCTTTTTCACGAGTAATATTATATTCCCTTTTTGTCTGATTTGCGTGAGAGTAACTATTTGGAAATGGGGATGCTAATTATTGGATCCTGTTGATTTCTATCTCGAAGTTAGTTCTTCCTTTTTGCTACATGCCTACATCACCAGCCTACCTGATCATATGTCTAGGTTTCCTTTCTTTTGCCTCCTCCTGCGAAAAAAAGAAAAGAAATTTAACTTCTCAAGCTTTCTCATTGTGTATCAGCATAATTGTTTGTCAAATGCTAGATCTGTTCCTGCATACTTACTTTCCATTCGCTTAATTTACTCTATTAATTTCCCCTTCTTTTTTGAAAGAAAAGAAAGAATCACGTTTTTGGCATGACTGCTGAATTTGCTGAGGCCTTCATTTCTTGTGACAGTTGTTTAATAGACTCTTTGGGACCTATTCTTTGTGTACATTTCTTGACATGCTTACCAATTTATGGAGGTCGAAAACTGAAACTTCTTATCAACCTGCAGGCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCCGAATTTTACCACCCAGGGAAGGAATATAATGTTCGTGTGGCTTCAAGGTGAGATAATCTGCCGACAGTATGGCTGGACCGGCATAGTTGCTTTGCCAGCAACAACTTCCTACATATAGCATTGCTATTTGTAGATCCATGCTCTACTTGCAAATTATTCTCTGGACAAGTCATGAGTTTTTAATCAGAAAGCAAGTGACATTGTTATATATTTTTTAAGTCAGAAATAATAAAAGGAACATCATTCACTTACATATACAACAACTACCCGTCAGTTCCAAACTAGTCGGGGTCGTTATATGATTTTTGCTGTCCATGTTACTCCATTTAATCCCATATCTTGCGGACTTGTAAAGTTTAGAATCTCTATATTTTCTTAACTGACAAACTTCTGAAAAGCTAAAACACTCCTAGAAAGTATAGGACCTACAGGAAAATTCTAATATATTAATATATTCTCGACTAATATGTAGCATATATATAGAATTTTTTCTTCCATTGTGCCTTTCGTAAGTTCACATGGATCCTTAAAATTATAGGTCCTTAAAGACAACTTCCTTCCATGTGATTTTAGGTCTACTTCGTTTTTTAACAGCTCCACTCACCATAGTTTCACACTCAGGAGTCAGTGCATCAGGAGGGGTTAATGCAAGACATAATCAAATCATCTCAAGGAACAGCTGAGTTCTTAAAGAATACTTAAAACAATACCCATTAAAGAATACTTAAAACAATCAATGGGATTATAGGAAAAGGTTAGGAATTGTTTATGTAAAACTAATTCTGTATCAGCATAGCTGCATATGGGAAATTGGTTTTGTACCGTAAGTTAGTGGTTCATAAACTATCAATGCTATTGAAGCAAGTCTGAGTTCTTCTTTTCTTGCACTTCAGATACTTCAAGGGCCCTGAACTTCTAGTTGACTTGCAAGACTATGACTATTCTTTGGACATGTGGAGCCTTGGCT</genome_strand>
        <mrna_strand>GTCAAACAGAAGCTGGGCCCAATTACTCCTCCGCATCTACCCAGCCTGCGTCTTCTTTGTGTCCCCTTTTCCGAAATCCGATACCTTAATCAACAACTCTTCAGTCTCTGATTTCCGATAAAACCATGTCTAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAACGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAAGAGAGATAAAGATATTGCAAAACCTCTGTGGTGGACCAAACATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGATTACGACATACGGTACTACATATATGAGCTTCTCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTAGATTATTGCCATTCACAGGGAATAATGCATAGGGATGTCAAGCCTCATAACGTTATGATAGATCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCTGAATTTTACCACCCAGGGAAGGAATATAATGTTCGTGTGGCTTCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTTCAAGGGCCCTGAACTTCTAGTTGACTTGCAAGACTACGACTATTCTTTGGACATGTGGAGCCTTGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E342660" ref_strand="+" ref_description="SGN-E342660 [cTOF-7-L21]">
      <seq>atcaaacagaagcggggcccaattccttcgttgcatctacccagcctgcgtcttctttgttgtcccttttccgaaatccgatacctttatcaataactcttcagtctctgatttccggataaaccatgtccaaagctcgagtatacaccgatatcaatgtgcttcgtcctagggaatattgggattacgaatcgctaactgttcaatggggtgatcaggatgactatgaggttgttcgaaaagttggaagaggaaaatacagtgaagtttttgaaggtataaatgttaacagcagggagaagtgcataatcaagatcctgaaacctgttaagaagaaaaagatcaaaagagagataaagatattgcaaaatctctgtggtggaccaaatattgtcaaactccttgatatcgtcagagatcagcattcaaaaactccaagcttgatttttgagtacgtgaacagcacagatttcaaggttttgtacccaacgctaacagactatgacatacggtactacatatatgagcttctcaaggcactagattattgccattcacagggaataatgcacagggatgtcaaacctcataacgttatgatagaccatgaactgcggaagcttcgcttgatagattggggtcttgccgaattttaccacccagggaagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="84889" stop="89373"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85189" g_stop="85399" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85400" i_stop="86575" i_length="1176">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86576" g_stop="86705" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="341" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86706" i_stop="87264" i_length="559">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.273" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87265" g_stop="87459" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="536" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87460" i_stop="88939" i_length="1480">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88940" g_stop="89073" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="670" r_length="134" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E342660" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342660" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85189" e_stop="85399"/>
          <exon e_start="86576" e_stop="86705"/>
          <exon e_start="87265" e_stop="87459"/>
          <exon e_start="88940" e_stop="89073"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGGGTAAATATTTTCCCTTATTTAACCCTAATCGCTTTTGATTTTGTTTTTAGTTTTGGGGGTTTGTATACTGGATAATAGATTGAAATTCTTGAATTAGATGCTGTTTATTACCTTTTTTTAAAAAGATTGTTTGGTAAAATAATAACATCCACTTCTAGCATCCAAGAAAATAGTTTTTGCTTATGTTTCCTTGTTTTTTCCGTCTGAAGTAAAAAGTGGGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGGTATGTTTCCTTGTTTTTTTCGTCTGAAAGAAAAGTGGGTGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGTTATGTTTCCTTTTTTAAAGATAAGTGGAGGTTACATAGCATTGTAACATCCACTCCAGGGGTGGGTGAAACCTGAAAACAAATGTTGGGTTTCTTATTCCTATTTTTTGTCTAATAGATAATTGTGTGATCAGTGTTAGATGCTATTTTGGCGAATTCCTGCTATCTTGAATGGAATGACTTTCACATTGGAAAATACCTATTGGGTTAATGCAAAACTCCTGTCTAGTCTTGTTGAACTGAGTCTGTATTTTGTGGCTCCAGATTAGGTTGGGCTTCAAGTCTTTATATGTTTGTTACTTCTATATTAGCTTCCACATGATACAATGGAAGCTAAATAACAAATATAATATACCAATTAGTTGAGTTATATACCAATTTGTTGAGTTTAAGGATTGGTCCTGCTGGTGCACATTTGGACTGAAGTAAATGTTTGTGTAAGTCTTGTAATAAGAGTGAGATTTACAACCCGTTGTGTTAAAAGTTGAATTATTGAATACTTGAATGGAACAGCCCCGAAGTGGAGTGGATAATTATAGAGGCTTCATTTAGTTGACACCAGTTAGTTTATTTTTGTTATTGTATAGTTCTGCTGCATTTATCAAGATGAGAGCATTTTGTGTAACAAGAACTATATAAATGTCTTGCTAAAGTGGGAGAATATAGTTTGTTAATCTTGGTTCTAGAGTACCTTGACCCTTGGCTCAACGATTAGTTTTATCTTACACAAGTATTGGTTTCAGATATGATTCTATTTGACTTACTCAACTTTAATGCACCAGCTACATTGTATTATCCTCACTAGTGCATGTCATATTTATTATTGTAGTGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAGGTATGACGTTTTTTGGCTGAATTAAGATTTCATTTTTCTGCTTCAAAAGGAAAAAAAATGAAGAAGTTTGCAGGAAGAGTTCTTCTGTAATGCAATACTTATTTTTTGTCTGACTTAATATCTATGGATAATCTTCAACATTAATGGAAGAATCTGTATCTAACTCATATAAAGGGGCTTAGTATCTATTGAGAATCATCAACATCGACAGGCTTAATGGAAAAATCTGTATTTAACTCATGAAAAAGACTACTCTCAATTATCTATCCATGTGGTTGATAGGGTGTCAAAGAAATAAGTGAAGTTTCTTTTTTGGAACTTTGGAAAAAATTCAGTTATGTTGTACGAAATGCATAATGCCTAGGTTCATCTCTTGATGACATTTTTTGATCGTTTTGGTAGTGTTATGCATCCACTGTTCATACACCTTTTGTCCTCCTATCCTTTCTTTAACTTAATTTTTAAATTAACACTGTTTTAGTTTGTAATATTGTGCTTTATACGGAAAAAAAGAAAAGAATATACATGCTTTTGACTTGACATTAGCGGTATCGTGTAGATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAGGTAAGATGATAAACACATCAGATGGCAGTCAATATGGCTTTTATGTATTCATGCTCCCTCTCCCCTGATTCTTTTTTTTTTTTTTAAGGAAGGTAACAGTTATATACTTCCTGTCCTCTTGGTCCTCCTTTTCTGTATCTTCTTTCTTCTCTCAGAACCAAGAATAGAGTTGTACTGATGTCTTAACTTACTATCTGGTCAAAACTTTGTTTGTCTCCAACATTTCCTTCTATTGCAGCTTTTCAAGGTTTGTATGAGTATGAGAATTTTGGGAGTCCCCAGTTTTCTTATGCTCAGCAACTATTTCTGAATTGAGTGGATATATTCTCATATACTATGATCAAATTATGAGATCAAACTATCAAAGTTATAACTCCTAGGCTCATCTCAAGTGGAAATTTTGGAATCCAAGATTCTGGTGCCATAAAACTGCACTAATTTGGATTCATCTTATATCTATATTTAGATAATTGGGAGTCTGTCGAATGTGTCTCGTGATCTTGGGTTAGTGGGAATGACTAAGACTGTAAACTCATATTTGTTCACCTTATCCTGCCTGCCAATACATGGATTTCAAATCCATCATCAAAAATGTAGATTTTTCTTATTGATATTGTCAGCTCATTCACTGTCTTGGTCATTCCAATTGATTACCTTTCCTCTGCAATTCGGTCTAAGTATAGCTTCTGAATGTGTTTTTTACAAGGTAAATGACCTCATAGTGAGGTGCTTACCATGTCTCTTGTTATCAGATGATATGAATTAGATTCACTGCATGCCTATTGGAAGTTGATTTTATATCTAGATTAATGGCTATGCTCGTTGTTACTCTTAACAATGTGACATTTTTTTTCTGACTTTGGATTTCTTAAGTAACTCTCTTGTATTCTTCTGATCTTATAATTGGTTAAGGAAAAAAAATTCACCAATGCCATGGATATTCTCTCCTCTGTTTGCTAATTGCTATTTAAATTTCATTTTCCTTTTTCACGAGTAATATTATATTCCCTTTTTGTCTGATTTGCGTGAGAGTAACTATTTGGAAATGGGGATGCTAATTATTGGATCCTGTTGATTTCTATCTCGAAGTTAGTTCTTCCTTTTTGCTACATGCCTACATCACCAGCCTACCTGATCATATGTCTAGGTTTCCTTTCTTTTGCCTCCTCCTGCGAAAAAAAGAAAAGAAATTTAACTTCTCAAGCTTTCTCATTGTGTATCAGCATAATTGTTTGTCAAATGCTAGATCTGTTCCTGCATACTTACTTTCCATTCGCTTAATTTACTCTATTAATTTCCCCTTCTTTTTTGAAAGAAAAGAAAGAATCACGTTTTTGGCATGACTGCTGAATTTGCTGAGGCCTTCATTTCTTGTGACAGTTGTTTAATAGACTCTTTGGGACCTATTCTTTGTGTACATTTCTTGACATGCTTACCAATTTATGGAGGTCGAAAACTGAAACTTCTTATCAACCTGCAGGCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCCGAATTTTACCACCCAGGGAAGGA</genome_strand>
        <mrna_strand>ATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCCGAATTTTACCACCCAGGGAAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E452500" ref_strand="+" ref_description="SGN-E452500 [cSTS-17-E3]">
      <seq>gtcaaacagaagctgggcccaattactcctccgcatctacccagcctgcgtcttctttgtgtccccttttccgaaatccgataccttaatcaacaactcttcagtctctgatttccgataaaaccatgtctaaagctcgagtatacaccgatatcaatgtgcttcgtcctagggaatattgggattacgaatcgctaactgttcaatggggtgatcaggatgactatgaggttgttcgaaaagttggaagaggaaaatacagtgaagtttttgaaggtataaatgttaacagcaacgagaagtgcataatcaagatcctgaaacctgttaagaagaaaaagatcaaaagagagataaagatattgcaaaacctctgtggtggaccaaacattgtcaaactccttgatatcgtcagagatcagcattcaaaaactccaagcttgatttttgagtacgtgaacagcacagatttcaaggttttgtacccaacgctaacagattacgacatacggtactacatatatgagcttctcaaggcactagattattgccattcacagggaataatgcataggggatgtcaagcctcataacgttatgatagatcatgaactgcngaaagctcgcttgatagattggggtcttgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="84921" stop="89352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85189" g_stop="85399" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85400" i_stop="86575" i_length="1176">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86576" g_stop="86705" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="341" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86706" i_stop="87264" i_length="559">
            <donor d_prob="0.975" d_score="0.96"/>
            <acceptor a_prob="0.273" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87265" g_stop="87459" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="536" r_length="195" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87460" i_stop="88939" i_length="1480">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88940" g_stop="89052" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="650" r_length="114" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E452500" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E452500" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85189" e_stop="85399"/>
          <exon e_start="86576" e_stop="86705"/>
          <exon e_start="87265" e_stop="87459"/>
          <exon e_start="88940" e_stop="89052"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGGGTAAATATTTTCCCTTATTTAACCCTAATCGCTTTTGATTTTGTTTTTAGTTTTGGGGGTTTGTATACTGGATAATAGATTGAAATTCTTGAATTAGATGCTGTTTATTACCTTTTTTTAAAAAGATTGTTTGGTAAAATAATAACATCCACTTCTAGCATCCAAGAAAATAGTTTTTGCTTATGTTTCCTTGTTTTTTCCGTCTGAAGTAAAAAGTGGGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGGTATGTTTCCTTGTTTTTTTCGTCTGAAAGAAAAGTGGGTGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGTTATGTTTCCTTTTTTAAAGATAAGTGGAGGTTACATAGCATTGTAACATCCACTCCAGGGGTGGGTGAAACCTGAAAACAAATGTTGGGTTTCTTATTCCTATTTTTTGTCTAATAGATAATTGTGTGATCAGTGTTAGATGCTATTTTGGCGAATTCCTGCTATCTTGAATGGAATGACTTTCACATTGGAAAATACCTATTGGGTTAATGCAAAACTCCTGTCTAGTCTTGTTGAACTGAGTCTGTATTTTGTGGCTCCAGATTAGGTTGGGCTTCAAGTCTTTATATGTTTGTTACTTCTATATTAGCTTCCACATGATACAATGGAAGCTAAATAACAAATATAATATACCAATTAGTTGAGTTATATACCAATTTGTTGAGTTTAAGGATTGGTCCTGCTGGTGCACATTTGGACTGAAGTAAATGTTTGTGTAAGTCTTGTAATAAGAGTGAGATTTACAACCCGTTGTGTTAAAAGTTGAATTATTGAATACTTGAATGGAACAGCCCCGAAGTGGAGTGGATAATTATAGAGGCTTCATTTAGTTGACACCAGTTAGTTTATTTTTGTTATTGTATAGTTCTGCTGCATTTATCAAGATGAGAGCATTTTGTGTAACAAGAACTATATAAATGTCTTGCTAAAGTGGGAGAATATAGTTTGTTAATCTTGGTTCTAGAGTACCTTGACCCTTGGCTCAACGATTAGTTTTATCTTACACAAGTATTGGTTTCAGATATGATTCTATTTGACTTACTCAACTTTAATGCACCAGCTACATTGTATTATCCTCACTAGTGCATGTCATATTTATTATTGTAGTGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAGGTATGACGTTTTTTGGCTGAATTAAGATTTCATTTTTCTGCTTCAAAAGGAAAAAAAATGAAGAAGTTTGCAGGAAGAGTTCTTCTGTAATGCAATACTTATTTTTTGTCTGACTTAATATCTATGGATAATCTTCAACATTAATGGAAGAATCTGTATCTAACTCATATAAAGGGGCTTAGTATCTATTGAGAATCATCAACATCGACAGGCTTAATGGAAAAATCTGTATTTAACTCATGAAAAAGACTACTCTCAATTATCTATCCATGTGGTTGATAGGGTGTCAAAGAAATAAGTGAAGTTTCTTTTTTGGAACTTTGGAAAAAATTCAGTTATGTTGTACGAAATGCATAATGCCTAGGTTCATCTCTTGATGACATTTTTTGATCGTTTTGGTAGTGTTATGCATCCACTGTTCATACACCTTTTGTCCTCCTATCCTTTCTTTAACTTAATTTTTAAATTAACACTGTTTTAGTTTGTAATATTGTGCTTTATACGGAAAAAAAGAAAAGAATATACATGCTTTTGACTTGACATTAGCGGTATCGTGTAGATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAGGTAAGATGATAAACACATCAGATGGCAGTCAATATGGCTTTTATGTATTCATGCTCCCTCTCCCCTGATTCTTTTTTTTTTTTTTAAGGAAGGTAACAGTTATATACTTCCTGTCCTCTTGGTCCTCCTTTTCTGTATCTTCTTTCTTCTCTCAGAACCAAGAATAGAGTTGTACTGATGTCTTAACTTACTATCTGGTCAAAACTTTGTTTGTCTCCAACATTTCCTTCTATTGCAGCTTTTCAAGGTTTGTATGAGTATGAGAATTTTGGGAGTCCCCAGTTTTCTTATGCTCAGCAACTATTTCTGAATTGAGTGGATATATTCTCATATACTATGATCAAATTATGAGATCAAACTATCAAAGTTATAACTCCTAGGCTCATCTCAAGTGGAAATTTTGGAATCCAAGATTCTGGTGCCATAAAACTGCACTAATTTGGATTCATCTTATATCTATATTTAGATAATTGGGAGTCTGTCGAATGTGTCTCGTGATCTTGGGTTAGTGGGAATGACTAAGACTGTAAACTCATATTTGTTCACCTTATCCTGCCTGCCAATACATGGATTTCAAATCCATCATCAAAAATGTAGATTTTTCTTATTGATATTGTCAGCTCATTCACTGTCTTGGTCATTCCAATTGATTACCTTTCCTCTGCAATTCGGTCTAAGTATAGCTTCTGAATGTGTTTTTTACAAGGTAAATGACCTCATAGTGAGGTGCTTACCATGTCTCTTGTTATCAGATGATATGAATTAGATTCACTGCATGCCTATTGGAAGTTGATTTTATATCTAGATTAATGGCTATGCTCGTTGTTACTCTTAACAATGTGACATTTTTTTTCTGACTTTGGATTTCTTAAGTAACTCTCTTGTATTCTTCTGATCTTATAATTGGTTAAGGAAAAAAAATTCACCAATGCCATGGATATTCTCTCCTCTGTTTGCTAATTGCTATTTAAATTTCATTTTCCTTTTTCACGAGTAATATTATATTCCCTTTTTGTCTGATTTGCGTGAGAGTAACTATTTGGAAATGGGGATGCTAATTATTGGATCCTGTTGATTTCTATCTCGAAGTTAGTTCTTCCTTTTTGCTACATGCCTACATCACCAGCCTACCTGATCATATGTCTAGGTTTCCTTTCTTTTGCCTCCTCCTGCGAAAAAAAGAAAAGAAATTTAACTTCTCAAGCTTTCTCATTGTGTATCAGCATAATTGTTTGTCAAATGCTAGATCTGTTCCTGCATACTTACTTTCCATTCGCTTAATTTACTCTATTAATTTCCCCTTCTTTTTTGAAAGAAAAGAAAGAATCACGTTTTTGGCATGACTGCTGAATTTGCTGAGGCCTTCATTTCTTGTGACAGTTGTTTAATAGACTCTTTGGGACCTATTCTTTGTGTACATTTCTTGACATGCTTACCAATTTATGGAGGTCGAAAACTGAAACTTCTTATCAACCTGCAGGCACTAGATTATTGCCATTCACAGGGAATAATGCACA-GGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCCGA</genome_strand>
        <mrna_strand>GTCAAACAGAAGCTGGGCCCAATTACTCCTCCGCATCTACCCAGCCTGCGTCTTCTTTGTGTCCCCTTTTCCGAAATCCGATACCTTAATCAACAACTCTTCAGTCTCTGATTTCCGATAAAACCATGTCTAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAACGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAAGAGAGATAAAGATATTGCAAAACCTCTGTGGTGGACCAAACATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGATTACGACATACGGTACTACATATATGAGCTTCTCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTAGATTATTGCCATTCACAGGGAATAATGCATAGGGGATGTCAAGCCTCATAACGTTATGATAGATCATGAACTGCNGAAAGCTCGCTTGATAGATTGGGGTCTTGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E462815" ref_strand="+" ref_description="SGN-E462815 [cPRO-12-F2]">
      <seq>attactcctccgcatctacccagcctgcgtcttctttgtgtccccttttccgaaatccgataccttaatcaacaactcttcagtctctgatttccgataaaaccatgtctaaagctcgagtatacaccgatatcaatgtgcttcgtcctagggaatattgggattacgaatcgctaactgttcaatggggtgatcaggatgactatgaggttgttcgaaaagttggaagaggaaaatacagtgaagtttttgaaggtataaatgttaacagcaacgagaagtgcataatcaagatcctgaaacctgttaagaagaaaaagatcaaaagagagataaagatattgcaaaacctctgtggtggaccaaacattgtcaaactccttgatatcgtcagagatcagcattcaaaaactccaagcttgatttttgagtacgtgaacagcacagatttcaaggttttgtacccaacgctaacagattacgacatacggtactacatatatgagcttctcaaggcactagattattgccattcacagggaataatgcatanggatgtcaagcctcataacgttatgatagatcatgaactgcggaagcttcgcttgatagattggggtcttgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="84921" stop="89352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85210" g_stop="85399" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85400" i_stop="86575" i_length="1176">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86576" g_stop="86705" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="320" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86706" i_stop="87264" i_length="559">
            <donor d_prob="0.975" d_score="0.96"/>
            <acceptor a_prob="0.273" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87265" g_stop="87459" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="515" r_length="195" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87460" i_stop="88939" i_length="1480">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88940" g_stop="89052" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="628" r_length="113" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E462815" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E462815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85210" e_stop="85399"/>
          <exon e_start="86576" e_stop="86705"/>
          <exon e_start="87265" e_stop="87459"/>
          <exon e_start="88940" e_stop="89052"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGGGTAAATATTTTCCCTTATTTAACCCTAATCGCTTTTGATTTTGTTTTTAGTTTTGGGGGTTTGTATACTGGATAATAGATTGAAATTCTTGAATTAGATGCTGTTTATTACCTTTTTTTAAAAAGATTGTTTGGTAAAATAATAACATCCACTTCTAGCATCCAAGAAAATAGTTTTTGCTTATGTTTCCTTGTTTTTTCCGTCTGAAGTAAAAAGTGGGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGGTATGTTTCCTTGTTTTTTTCGTCTGAAAGAAAAGTGGGTGTGTTGTAACATCCTCTTACAGCATCCAAGAACATAATTCTTGGTTATGTTTCCTTTTTTAAAGATAAGTGGAGGTTACATAGCATTGTAACATCCACTCCAGGGGTGGGTGAAACCTGAAAACAAATGTTGGGTTTCTTATTCCTATTTTTTGTCTAATAGATAATTGTGTGATCAGTGTTAGATGCTATTTTGGCGAATTCCTGCTATCTTGAATGGAATGACTTTCACATTGGAAAATACCTATTGGGTTAATGCAAAACTCCTGTCTAGTCTTGTTGAACTGAGTCTGTATTTTGTGGCTCCAGATTAGGTTGGGCTTCAAGTCTTTATATGTTTGTTACTTCTATATTAGCTTCCACATGATACAATGGAAGCTAAATAACAAATATAATATACCAATTAGTTGAGTTATATACCAATTTGTTGAGTTTAAGGATTGGTCCTGCTGGTGCACATTTGGACTGAAGTAAATGTTTGTGTAAGTCTTGTAATAAGAGTGAGATTTACAACCCGTTGTGTTAAAAGTTGAATTATTGAATACTTGAATGGAACAGCCCCGAAGTGGAGTGGATAATTATAGAGGCTTCATTTAGTTGACACCAGTTAGTTTATTTTTGTTATTGTATAGTTCTGCTGCATTTATCAAGATGAGAGCATTTTGTGTAACAAGAACTATATAAATGTCTTGCTAAAGTGGGAGAATATAGTTTGTTAATCTTGGTTCTAGAGTACCTTGACCCTTGGCTCAACGATTAGTTTTATCTTACACAAGTATTGGTTTCAGATATGATTCTATTTGACTTACTCAACTTTAATGCACCAGCTACATTGTATTATCCTCACTAGTGCATGTCATATTTATTATTGTAGTGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAGGTATGACGTTTTTTGGCTGAATTAAGATTTCATTTTTCTGCTTCAAAAGGAAAAAAAATGAAGAAGTTTGCAGGAAGAGTTCTTCTGTAATGCAATACTTATTTTTTGTCTGACTTAATATCTATGGATAATCTTCAACATTAATGGAAGAATCTGTATCTAACTCATATAAAGGGGCTTAGTATCTATTGAGAATCATCAACATCGACAGGCTTAATGGAAAAATCTGTATTTAACTCATGAAAAAGACTACTCTCAATTATCTATCCATGTGGTTGATAGGGTGTCAAAGAAATAAGTGAAGTTTCTTTTTTGGAACTTTGGAAAAAATTCAGTTATGTTGTACGAAATGCATAATGCCTAGGTTCATCTCTTGATGACATTTTTTGATCGTTTTGGTAGTGTTATGCATCCACTGTTCATACACCTTTTGTCCTCCTATCCTTTCTTTAACTTAATTTTTAAATTAACACTGTTTTAGTTTGTAATATTGTGCTTTATACGGAAAAAAAGAAAAGAATATACATGCTTTTGACTTGACATTAGCGGTATCGTGTAGATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAGGTAAGATGATAAACACATCAGATGGCAGTCAATATGGCTTTTATGTATTCATGCTCCCTCTCCCCTGATTCTTTTTTTTTTTTTTAAGGAAGGTAACAGTTATATACTTCCTGTCCTCTTGGTCCTCCTTTTCTGTATCTTCTTTCTTCTCTCAGAACCAAGAATAGAGTTGTACTGATGTCTTAACTTACTATCTGGTCAAAACTTTGTTTGTCTCCAACATTTCCTTCTATTGCAGCTTTTCAAGGTTTGTATGAGTATGAGAATTTTGGGAGTCCCCAGTTTTCTTATGCTCAGCAACTATTTCTGAATTGAGTGGATATATTCTCATATACTATGATCAAATTATGAGATCAAACTATCAAAGTTATAACTCCTAGGCTCATCTCAAGTGGAAATTTTGGAATCCAAGATTCTGGTGCCATAAAACTGCACTAATTTGGATTCATCTTATATCTATATTTAGATAATTGGGAGTCTGTCGAATGTGTCTCGTGATCTTGGGTTAGTGGGAATGACTAAGACTGTAAACTCATATTTGTTCACCTTATCCTGCCTGCCAATACATGGATTTCAAATCCATCATCAAAAATGTAGATTTTTCTTATTGATATTGTCAGCTCATTCACTGTCTTGGTCATTCCAATTGATTACCTTTCCTCTGCAATTCGGTCTAAGTATAGCTTCTGAATGTGTTTTTTACAAGGTAAATGACCTCATAGTGAGGTGCTTACCATGTCTCTTGTTATCAGATGATATGAATTAGATTCACTGCATGCCTATTGGAAGTTGATTTTATATCTAGATTAATGGCTATGCTCGTTGTTACTCTTAACAATGTGACATTTTTTTTCTGACTTTGGATTTCTTAAGTAACTCTCTTGTATTCTTCTGATCTTATAATTGGTTAAGGAAAAAAAATTCACCAATGCCATGGATATTCTCTCCTCTGTTTGCTAATTGCTATTTAAATTTCATTTTCCTTTTTCACGAGTAATATTATATTCCCTTTTTGTCTGATTTGCGTGAGAGTAACTATTTGGAAATGGGGATGCTAATTATTGGATCCTGTTGATTTCTATCTCGAAGTTAGTTCTTCCTTTTTGCTACATGCCTACATCACCAGCCTACCTGATCATATGTCTAGGTTTCCTTTCTTTTGCCTCCTCCTGCGAAAAAAAGAAAAGAAATTTAACTTCTCAAGCTTTCTCATTGTGTATCAGCATAATTGTTTGTCAAATGCTAGATCTGTTCCTGCATACTTACTTTCCATTCGCTTAATTTACTCTATTAATTTCCCCTTCTTTTTTGAAAGAAAAGAAAGAATCACGTTTTTGGCATGACTGCTGAATTTGCTGAGGCCTTCATTTCTTGTGACAGTTGTTTAATAGACTCTTTGGGACCTATTCTTTGTGTACATTTCTTGACATGCTTACCAATTTATGGAGGTCGAAAACTGAAACTTCTTATCAACCTGCAGGCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCCGA</genome_strand>
        <mrna_strand>ATTACTCCTCCGCATCTACCCAGCCTGCGTCTTCTTTGTGTCCCCTTTTCCGAAATCCGATACCTTAATCAACAACTCTTCAGTCTCTGATTTCCGATAAAACCATGTCTAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAACGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAAGAGAGATAAAGATATTGCAAAACCTCTGTGGTGGACCAAACATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGATTACGACATACGGTACTACATATATGAGCTTCTCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTAGATTATTGCCATTCACAGGGAATAATGCATANGGATGTCAAGCCTCATAACGTTATGATAGATCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E572566" ref_strand="+" ref_description="SGN-E572566 [31740]">
      <seq>atcaggatgactatgaggttgttcggaaagttggaagaggaaaatatagtgaagtttttgaaggtataaatgttcacagcaacgagaagtgcataatcaagatcctgaaacctgttaagaagaaaaagatcaagagagagatcaaaatcttgcagaacctctgtggcggaccaaatgttgtcaaactccttgatattgtcagagaccagcactcaaaaacaccaagcttaatttttgagtatgtgaacagtacagatttcaaagtactgtacccaacattaacggattatgacatacgctactacatatatgagcttctcaaggcactagactattgtcattctcagggaataatgcacagagatgtcaagccacataatgttatgatagaccatgagttgcggaagcttcgcttgatagactggggtcttgctgaattttaccatccaggaaaggaatataatgtccgtgtggcttcaagatacttcaagggccctgaacttctagttgacttgcaagattatgactattctttggacatgtggagccttggatgcatgtttgcaggaatgatcttccgcaaggaacctttcttctatggccatgataaccaggatcagcttgtcaaaattgctaaggtacttggaactgatgagttgaatgcatatttgcacaagtatcaactggagcttgatcctcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="86278" stop="90839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86578" g_stop="86705" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86706" i_stop="87264" i_length="559">
            <donor d_prob="0.975" d_score="0.96"/>
            <acceptor a_prob="0.273" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87265" g_stop="87459" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="323" r_length="195" r_score="0.882"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87460" i_stop="88939" i_length="1480">
            <donor d_prob="0.989" d_score="0.90"/>
            <acceptor a_prob="0.992" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88940" g_stop="89097" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="481" r_length="158" r_score="0.911"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89098" i_stop="89943" i_length="846">
            <donor d_prob="0.568" d_score="0.92"/>
            <acceptor a_prob="0.911" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89944" g_stop="90034" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="572" r_length="91" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90035" i_stop="90220" i_length="186">
            <donor d_prob="0.930" d_score="0.98"/>
            <acceptor a_prob="0.941" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90221" g_stop="90286" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="638" r_length="66" r_score="0.924"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90287" i_stop="90476" i_length="190">
            <donor d_prob="0.987" d_score="0.92"/>
            <acceptor a_prob="0.992" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="90477" g_stop="90539" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="701" r_length="63" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E572566" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E572566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86578" e_stop="86705"/>
          <exon e_start="87265" e_stop="87459"/>
          <exon e_start="88940" e_stop="89097"/>
          <exon e_start="89944" e_stop="90034"/>
          <exon e_start="90221" e_stop="90286"/>
          <exon e_start="90477" e_stop="90539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAGGTATGACGTTTTTTGGCTGAATTAAGATTTCATTTTTCTGCTTCAAAAGGAAAAAAAATGAAGAAGTTTGCAGGAAGAGTTCTTCTGTAATGCAATACTTATTTTTTGTCTGACTTAATATCTATGGATAATCTTCAACATTAATGGAAGAATCTGTATCTAACTCATATAAAGGGGCTTAGTATCTATTGAGAATCATCAACATCGACAGGCTTAATGGAAAAATCTGTATTTAACTCATGAAAAAGACTACTCTCAATTATCTATCCATGTGGTTGATAGGGTGTCAAAGAAATAAGTGAAGTTTCTTTTTTGGAACTTTGGAAAAAATTCAGTTATGTTGTACGAAATGCATAATGCCTAGGTTCATCTCTTGATGACATTTTTTGATCGTTTTGGTAGTGTTATGCATCCACTGTTCATACACCTTTTGTCCTCCTATCCTTTCTTTAACTTAATTTTTAAATTAACACTGTTTTAGTTTGTAATATTGTGCTTTATACGGAAAAAAAGAAAAGAATATACATGCTTTTGACTTGACATTAGCGGTATCGTGTAGATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAGGTAAGATGATAAACACATCAGATGGCAGTCAATATGGCTTTTATGTATTCATGCTCCCTCTCCCCTGATTCTTTTTTTTTTTTTTAAGGAAGGTAACAGTTATATACTTCCTGTCCTCTTGGTCCTCCTTTTCTGTATCTTCTTTCTTCTCTCAGAACCAAGAATAGAGTTGTACTGATGTCTTAACTTACTATCTGGTCAAAACTTTGTTTGTCTCCAACATTTCCTTCTATTGCAGCTTTTCAAGGTTTGTATGAGTATGAGAATTTTGGGAGTCCCCAGTTTTCTTATGCTCAGCAACTATTTCTGAATTGAGTGGATATATTCTCATATACTATGATCAAATTATGAGATCAAACTATCAAAGTTATAACTCCTAGGCTCATCTCAAGTGGAAATTTTGGAATCCAAGATTCTGGTGCCATAAAACTGCACTAATTTGGATTCATCTTATATCTATATTTAGATAATTGGGAGTCTGTCGAATGTGTCTCGTGATCTTGGGTTAGTGGGAATGACTAAGACTGTAAACTCATATTTGTTCACCTTATCCTGCCTGCCAATACATGGATTTCAAATCCATCATCAAAAATGTAGATTTTTCTTATTGATATTGTCAGCTCATTCACTGTCTTGGTCATTCCAATTGATTACCTTTCCTCTGCAATTCGGTCTAAGTATAGCTTCTGAATGTGTTTTTTACAAGGTAAATGACCTCATAGTGAGGTGCTTACCATGTCTCTTGTTATCAGATGATATGAATTAGATTCACTGCATGCCTATTGGAAGTTGATTTTATATCTAGATTAATGGCTATGCTCGTTGTTACTCTTAACAATGTGACATTTTTTTTCTGACTTTGGATTTCTTAAGTAACTCTCTTGTATTCTTCTGATCTTATAATTGGTTAAGGAAAAAAAATTCACCAATGCCATGGATATTCTCTCCTCTGTTTGCTAATTGCTATTTAAATTTCATTTTCCTTTTTCACGAGTAATATTATATTCCCTTTTTGTCTGATTTGCGTGAGAGTAACTATTTGGAAATGGGGATGCTAATTATTGGATCCTGTTGATTTCTATCTCGAAGTTAGTTCTTCCTTTTTGCTACATGCCTACATCACCAGCCTACCTGATCATATGTCTAGGTTTCCTTTCTTTTGCCTCCTCCTGCGAAAAAAAGAAAAGAAATTTAACTTCTCAAGCTTTCTCATTGTGTATCAGCATAATTGTTTGTCAAATGCTAGATCTGTTCCTGCATACTTACTTTCCATTCGCTTAATTTACTCTATTAATTTCCCCTTCTTTTTTGAAAGAAAAGAAAGAATCACGTTTTTGGCATGACTGCTGAATTTGCTGAGGCCTTCATTTCTTGTGACAGTTGTTTAATAGACTCTTTGGGACCTATTCTTTGTGTACATTTCTTGACATGCTTACCAATTTATGGAGGTCGAAAACTGAAACTTCTTATCAACCTGCAGGCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCCGAATTTTACCACCCAGGGAAGGAATATAATGTTCGTGTGGCTTCAAGGTGAGATAATCTGCCGACAGTATGGCTGGACCGGCATAGTTGCTTTGCCAGCAACAACTTCCTACATATAGCATTGCTATTTGTAGATCCATGCTCTACTTGCAAATTATTCTCTGGACAAGTCATGAGTTTTTAATCAGAAAGCAAGTGACATTGTTATATATTTTTTAAGTCAGAAATAATAAAAGGAACATCATTCACTTACATATACAACAACTACCCGTCAGTTCCAAACTAGTCGGGGTCGTTATATGATTTTTGCTGTCCATGTTACTCCATTTAATCCCATATCTTGCGGACTTGTAAAGTTTAGAATCTCTATATTTTCTTAACTGACAAACTTCTGAAAAGCTAAAACACTCCTAGAAAGTATAGGACCTACAGGAAAATTCTAATATATTAATATATTCTCGACTAATATGTAGCATATATATAGAATTTTTTCTTCCATTGTGCCTTTCGTAAGTTCACATGGATCCTTAAAATTATAGGTCCTTAAAGACAACTTCCTTCCATGTGATTTTAGGTCTACTTCGTTTTTTAACAGCTCCACTCACCATAGTTTCACACTCAGGAGTCAGTGCATCAGGAGGGGTTAATGCAAGACATAATCAAATCATCTCAAGGAACAGCTGAGTTCTTAAAGAATACTTAAAACAATACCCATTAAAGAATACTTAAAACAATCAATGGGATTATAGGAAAAGGTTAGGAATTGTTTATGTAAAACTAATTCTGTATCAGCATAGCTGCATATGGGAAATTGGTTTTGTACCGTAAGTTAGTGGTTCATAAACTATCAATGCTATTGAAGCAAGTCTGAGTTCTTCTTTTCTTGCACTTCAGATACTTCAAGGGCCCTGAACTTCTAGTTGACTTGCAAGACTATGACTATTCTTTGGACATGTGGAGCCTTGGCTGCATGTTTGCAGGAATGGTGAGAAATTCTATGATTCATAATATAAGCTGTCAGTTGGTTTATAGTTTTATGCTATCAGTTGTGGGCCTGGGAAACTACAAACATCCGAAAGGACTTGTTAGAAGTTTGTATTTTGCTTATTTGAAATCAATTTTCCTTTTCCTCCTGTTTTCTTTGTGTCTGACCATACCTTTTCCTTGGTAGATTTTCCGCAAGGAACCTTTCTTTTATGGCCATGATAATCAGGATCAGCTCGTCAAAATTGCAAAGGTAATGCGTAGTAACTGACCAGTGACCAATGGGTTTATATACCTTAATTTTGTTGTTTGAGTGAGAGGGGGGAAGTTGATCATCTGAAAACAACCAAAGAAGTTGTTACTTCAGTTGCAAGTGAACACTCAATTTATAGAAGTAAAGCATAACTGCTTGACATGGAGTTGATAGATTATTGTTGTTATAGGTACTTGGGACAGATGAGTTGAATGCGTACTTGCACAAGTATCAACTAGAGCTTGATCCTCAG</genome_strand>
        <mrna_strand>ATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGAGGAAAATATAGTGAAGTTTTTGAAGGTATAAATGTTCACAGCAACGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGAGAGAGATCAAAATCTTGCAGAACCTCTGTGGCGGACCAAATGTTGTCAAACTCCTTGATATTGTCAGAGACCAGCACTCAAAAACACCAAGCTTAATTTTTGAGTATGTGAACAGTACAGATTTCAAAGTACTGTACCCAACATTAACGGATTATGACATACGCTACTACATATATGAGCTTCTCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTAGACTATTGTCATTCTCAGGGAATAATGCACAGAGATGTCAAGCCACATAATGTTATGATAGACCATGAGTTGCGGAAGCTTCGCTTGATAGACTGGGGTCTTGCTGAATTTTACCATCCAGGAAAGGAATATAATGTCCGTGTGGCTTCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTCAAGGGCCCTGAACTTCTAGTTGACTTGCAAGATTATGACTATTCTTTGGACATGTGGAGCCTTGGATGCATGTTTGCAGGAATG..........................................................................................................................................................................................ATCTTCCGCAAGGAACCTTTCTTCTATGGCCATGATAACCAGGATCAGCTTGTCAAAATTGCTAAG..............................................................................................................................................................................................GTACTTGGAACTGATGAGTTGAATGCATATTTGCACAAGTATCAACTGGAGCTTGATCCTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E467784" ref_strand="+" ref_description="SGN-E467784 [cSTB-1-N23]">
      <seq>cctcgtgccgaattcggcacgaggggaaagttggaagaggaaaatatagtgaagtttttgaaggtataaatgttcacagcaacgagaagtgcataatcaagatcctgaaacctgttaagaagaaaaagatcaagagagagatcaaaatcttgcagaacctctgtggcggaccaaatgttgtcaaactccttgatattgtcagagaccagcactcaaaaacaccaagcttaatttttgagtatgtgaacagtacagatttcaaagtactgtacccaactttaacggattatgacatacgctactacatatatgagcttctcaaggcactagactattgtcattctcagggaataatgcacagagatgtcaagccacataatgttatgatagaccatgagttgcggaagcttcgcttgatagactggggtcttgctgaattttaccatccaggaaaggaatataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="86302" stop="89380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86608" g_stop="86705" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="128" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86706" i_stop="87264" i_length="559">
            <donor d_prob="0.975" d_score="0.96"/>
            <acceptor a_prob="0.273" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87265" g_stop="87459" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="323" r_length="195" r_score="0.882"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87460" i_stop="88939" i_length="1480">
            <donor d_prob="0.989" d_score="0.90"/>
            <acceptor a_prob="0.992" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88940" g_stop="89080" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="464" r_length="141" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E467784" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E467784" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86608" e_stop="86705"/>
          <exon e_start="87265" e_stop="87459"/>
          <exon e_start="88940" e_stop="89080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAGGTATGACGTTTTTTGGCTGAATTAAGATTTCATTTTTCTGCTTCAAAAGGAAAAAAAATGAAGAAGTTTGCAGGAAGAGTTCTTCTGTAATGCAATACTTATTTTTTGTCTGACTTAATATCTATGGATAATCTTCAACATTAATGGAAGAATCTGTATCTAACTCATATAAAGGGGCTTAGTATCTATTGAGAATCATCAACATCGACAGGCTTAATGGAAAAATCTGTATTTAACTCATGAAAAAGACTACTCTCAATTATCTATCCATGTGGTTGATAGGGTGTCAAAGAAATAAGTGAAGTTTCTTTTTTGGAACTTTGGAAAAAATTCAGTTATGTTGTACGAAATGCATAATGCCTAGGTTCATCTCTTGATGACATTTTTTGATCGTTTTGGTAGTGTTATGCATCCACTGTTCATACACCTTTTGTCCTCCTATCCTTTCTTTAACTTAATTTTTAAATTAACACTGTTTTAGTTTGTAATATTGTGCTTTATACGGAAAAAAAGAAAAGAATATACATGCTTTTGACTTGACATTAGCGGTATCGTGTAGATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAGGTAAGATGATAAACACATCAGATGGCAGTCAATATGGCTTTTATGTATTCATGCTCCCTCTCCCCTGATTCTTTTTTTTTTTTTTAAGGAAGGTAACAGTTATATACTTCCTGTCCTCTTGGTCCTCCTTTTCTGTATCTTCTTTCTTCTCTCAGAACCAAGAATAGAGTTGTACTGATGTCTTAACTTACTATCTGGTCAAAACTTTGTTTGTCTCCAACATTTCCTTCTATTGCAGCTTTTCAAGGTTTGTATGAGTATGAGAATTTTGGGAGTCCCCAGTTTTCTTATGCTCAGCAACTATTTCTGAATTGAGTGGATATATTCTCATATACTATGATCAAATTATGAGATCAAACTATCAAAGTTATAACTCCTAGGCTCATCTCAAGTGGAAATTTTGGAATCCAAGATTCTGGTGCCATAAAACTGCACTAATTTGGATTCATCTTATATCTATATTTAGATAATTGGGAGTCTGTCGAATGTGTCTCGTGATCTTGGGTTAGTGGGAATGACTAAGACTGTAAACTCATATTTGTTCACCTTATCCTGCCTGCCAATACATGGATTTCAAATCCATCATCAAAAATGTAGATTTTTCTTATTGATATTGTCAGCTCATTCACTGTCTTGGTCATTCCAATTGATTACCTTTCCTCTGCAATTCGGTCTAAGTATAGCTTCTGAATGTGTTTTTTACAAGGTAAATGACCTCATAGTGAGGTGCTTACCATGTCTCTTGTTATCAGATGATATGAATTAGATTCACTGCATGCCTATTGGAAGTTGATTTTATATCTAGATTAATGGCTATGCTCGTTGTTACTCTTAACAATGTGACATTTTTTTTCTGACTTTGGATTTCTTAAGTAACTCTCTTGTATTCTTCTGATCTTATAATTGGTTAAGGAAAAAAAATTCACCAATGCCATGGATATTCTCTCCTCTGTTTGCTAATTGCTATTTAAATTTCATTTTCCTTTTTCACGAGTAATATTATATTCCCTTTTTGTCTGATTTGCGTGAGAGTAACTATTTGGAAATGGGGATGCTAATTATTGGATCCTGTTGATTTCTATCTCGAAGTTAGTTCTTCCTTTTTGCTACATGCCTACATCACCAGCCTACCTGATCATATGTCTAGGTTTCCTTTCTTTTGCCTCCTCCTGCGAAAAAAAGAAAAGAAATTTAACTTCTCAAGCTTTCTCATTGTGTATCAGCATAATTGTTTGTCAAATGCTAGATCTGTTCCTGCATACTTACTTTCCATTCGCTTAATTTACTCTATTAATTTCCCCTTCTTTTTTGAAAGAAAAGAAAGAATCACGTTTTTGGCATGACTGCTGAATTTGCTGAGGCCTTCATTTCTTGTGACAGTTGTTTAATAGACTCTTTGGGACCTATTCTTTGTGTACATTTCTTGACATGCTTACCAATTTATGGAGGTCGAAAACTGAAACTTCTTATCAACCTGCAGGCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCCGAATTTTACCACCCAGGGAAGGAATATAAT</genome_strand>
        <mrna_strand>TTGGAAGAGGAAAATATAGTGAAGTTTTTGAAGGTATAAATGTTCACAGCAACGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGAGAGAGATCAAAATCTTGCAGAACCTCTGTGGCGGACCAAATGTTGTCAAACTCCTTGATATTGTCAGAGACCAGCACTCAAAAACACCAAGCTTAATTTTTGAGTATGTGAACAGTACAGATTTCAAAGTACTGTACCCAACTTTAACGGATTATGACATACGCTACTACATATATGAGCTTCTCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTAGACTATTGTCATTCTCAGGGAATAATGCACAGAGATGTCAAGCCACATAATGTTATGATAGACCATGAGTTGCGGAAGCTTCGCTTGATAGACTGGGGTCTTGCTGAATTTTACCATCCAGGAAAGGAATATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E275442" ref_strand="+" ref_description="SGN-E275442 [cLEN-10-F24]">
      <seq>tggaagaggaaaatacagagaagtttttgaaggtataaatgttaacagcagggagaagtgcgtaatcaagatcctgaaacctgttaagaagaaaaagatcaaaagagagataaagatattgcaaaatctctgtggtggaccaaatattgtcaaactccttgatatcgccagagatcagcattcaaaaactccaggcttgatttttgagtacgtgaacagcacagatttcaagggtttgtacccaacgctaacagactatgacataccgtactacatatatgagcttctcaaggcactagattattgccattcacagggaataatgcacagggatgtcaaacctcataacgttatgatagaccatgaactgcggaagcttcggttgatagattggggtcttgccgaattttaccacccagggaaggaatataatgttcgtgtggcttcaagatacttcaagggccctgaacttctagttgacttgcaagactatgactattctttggacatgtggagccttggctgcatgtttgcaggaatgattttacgcacggaacctttcttttatggccatgataatcaggatcagctcggtaaaattgcaaaggtacttgggacagatgagttgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="86309" stop="90800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86609" g_stop="86705" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86706" i_stop="87264" i_length="559">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.273" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87265" g_stop="87459" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="292" r_length="195" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87460" i_stop="88939" i_length="1480">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88940" g_stop="89097" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="450" r_length="158" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89098" i_stop="89943" i_length="846">
            <donor d_prob="0.568" d_score="1.00"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89944" g_stop="90034" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="541" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90035" i_stop="90220" i_length="186">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90221" g_stop="90286" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="607" r_length="66" r_score="0.939"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90287" i_stop="90476" i_length="190">
            <donor d_prob="0.987" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="90477" g_stop="90500" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="631" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E275442" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275442" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86609" e_stop="86705"/>
          <exon e_start="87265" e_stop="87459"/>
          <exon e_start="88940" e_stop="89097"/>
          <exon e_start="89944" e_stop="90034"/>
          <exon e_start="90221" e_stop="90286"/>
          <exon e_start="90477" e_stop="90500"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAGGTATGACGTTTTTTGGCTGAATTAAGATTTCATTTTTCTGCTTCAAAAGGAAAAAAAATGAAGAAGTTTGCAGGAAGAGTTCTTCTGTAATGCAATACTTATTTTTTGTCTGACTTAATATCTATGGATAATCTTCAACATTAATGGAAGAATCTGTATCTAACTCATATAAAGGGGCTTAGTATCTATTGAGAATCATCAACATCGACAGGCTTAATGGAAAAATCTGTATTTAACTCATGAAAAAGACTACTCTCAATTATCTATCCATGTGGTTGATAGGGTGTCAAAGAAATAAGTGAAGTTTCTTTTTTGGAACTTTGGAAAAAATTCAGTTATGTTGTACGAAATGCATAATGCCTAGGTTCATCTCTTGATGACATTTTTTGATCGTTTTGGTAGTGTTATGCATCCACTGTTCATACACCTTTTGTCCTCCTATCCTTTCTTTAACTTAATTTTTAAATTAACACTGTTTTAGTTTGTAATATTGTGCTTTATACGGAAAAAAAGAAAAGAATATACATGCTTTTGACTTGACATTAGCGGTATCGTGTAGATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAGGTAAGATGATAAACACATCAGATGGCAGTCAATATGGCTTTTATGTATTCATGCTCCCTCTCCCCTGATTCTTTTTTTTTTTTTTAAGGAAGGTAACAGTTATATACTTCCTGTCCTCTTGGTCCTCCTTTTCTGTATCTTCTTTCTTCTCTCAGAACCAAGAATAGAGTTGTACTGATGTCTTAACTTACTATCTGGTCAAAACTTTGTTTGTCTCCAACATTTCCTTCTATTGCAGCTTTTCAAGGTTTGTATGAGTATGAGAATTTTGGGAGTCCCCAGTTTTCTTATGCTCAGCAACTATTTCTGAATTGAGTGGATATATTCTCATATACTATGATCAAATTATGAGATCAAACTATCAAAGTTATAACTCCTAGGCTCATCTCAAGTGGAAATTTTGGAATCCAAGATTCTGGTGCCATAAAACTGCACTAATTTGGATTCATCTTATATCTATATTTAGATAATTGGGAGTCTGTCGAATGTGTCTCGTGATCTTGGGTTAGTGGGAATGACTAAGACTGTAAACTCATATTTGTTCACCTTATCCTGCCTGCCAATACATGGATTTCAAATCCATCATCAAAAATGTAGATTTTTCTTATTGATATTGTCAGCTCATTCACTGTCTTGGTCATTCCAATTGATTACCTTTCCTCTGCAATTCGGTCTAAGTATAGCTTCTGAATGTGTTTTTTACAAGGTAAATGACCTCATAGTGAGGTGCTTACCATGTCTCTTGTTATCAGATGATATGAATTAGATTCACTGCATGCCTATTGGAAGTTGATTTTATATCTAGATTAATGGCTATGCTCGTTGTTACTCTTAACAATGTGACATTTTTTTTCTGACTTTGGATTTCTTAAGTAACTCTCTTGTATTCTTCTGATCTTATAATTGGTTAAGGAAAAAAAATTCACCAATGCCATGGATATTCTCTCCTCTGTTTGCTAATTGCTATTTAAATTTCATTTTCCTTTTTCACGAGTAATATTATATTCCCTTTTTGTCTGATTTGCGTGAGAGTAACTATTTGGAAATGGGGATGCTAATTATTGGATCCTGTTGATTTCTATCTCGAAGTTAGTTCTTCCTTTTTGCTACATGCCTACATCACCAGCCTACCTGATCATATGTCTAGGTTTCCTTTCTTTTGCCTCCTCCTGCGAAAAAAAGAAAAGAAATTTAACTTCTCAAGCTTTCTCATTGTGTATCAGCATAATTGTTTGTCAAATGCTAGATCTGTTCCTGCATACTTACTTTCCATTCGCTTAATTTACTCTATTAATTTCCCCTTCTTTTTTGAAAGAAAAGAAAGAATCACGTTTTTGGCATGACTGCTGAATTTGCTGAGGCCTTCATTTCTTGTGACAGTTGTTTAATAGACTCTTTGGGACCTATTCTTTGTGTACATTTCTTGACATGCTTACCAATTTATGGAGGTCGAAAACTGAAACTTCTTATCAACCTGCAGGCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCCGAATTTTACCACCCAGGGAAGGAATATAATGTTCGTGTGGCTTCAAGGTGAGATAATCTGCCGACAGTATGGCTGGACCGGCATAGTTGCTTTGCCAGCAACAACTTCCTACATATAGCATTGCTATTTGTAGATCCATGCTCTACTTGCAAATTATTCTCTGGACAAGTCATGAGTTTTTAATCAGAAAGCAAGTGACATTGTTATATATTTTTTAAGTCAGAAATAATAAAAGGAACATCATTCACTTACATATACAACAACTACCCGTCAGTTCCAAACTAGTCGGGGTCGTTATATGATTTTTGCTGTCCATGTTACTCCATTTAATCCCATATCTTGCGGACTTGTAAAGTTTAGAATCTCTATATTTTCTTAACTGACAAACTTCTGAAAAGCTAAAACACTCCTAGAAAGTATAGGACCTACAGGAAAATTCTAATATATTAATATATTCTCGACTAATATGTAGCATATATATAGAATTTTTTCTTCCATTGTGCCTTTCGTAAGTTCACATGGATCCTTAAAATTATAGGTCCTTAAAGACAACTTCCTTCCATGTGATTTTAGGTCTACTTCGTTTTTTAACAGCTCCACTCACCATAGTTTCACACTCAGGAGTCAGTGCATCAGGAGGGGTTAATGCAAGACATAATCAAATCATCTCAAGGAACAGCTGAGTTCTTAAAGAATACTTAAAACAATACCCATTAAAGAATACTTAAAACAATCAATGGGATTATAGGAAAAGGTTAGGAATTGTTTATGTAAAACTAATTCTGTATCAGCATAGCTGCATATGGGAAATTGGTTTTGTACCGTAAGTTAGTGGTTCATAAACTATCAATGCTATTGAAGCAAGTCTGAGTTCTTCTTTTCTTGCACTTCAGATACTTCAAGGGCCCTGAACTTCTAGTTGACTTGCAAGACTATGACTATTCTTTGGACATGTGGAGCCTTGGCTGCATGTTTGCAGGAATGGTGAGAAATTCTATGATTCATAATATAAGCTGTCAGTTGGTTTATAGTTTTATGCTATCAGTTGTGGGCCTGGGAAACTACAAACATCCGAAAGGACTTGTTAGAAGTTTGTATTTTGCTTATTTGAAATCAATTTTCCTTTTCCTCCTGTTTTCTTTGTGTCTGACCATACCTTTTCCTTGGTAGATTTTCCGCAAGGAACCTTTCTTTTATGGCCATGATAATCAGGATCAGCTCGTCAAAATTGCAAAGGTAATGCGTAGTAACTGACCAGTGACCAATGGGTTTATATACCTTAATTTTGTTGTTTGAGTGAGAGGGGGGAAGTTGATCATCTGAAAACAACCAAAGAAGTTGTTACTTCAGTTGCAAGTGAACACTCAATTTATAGAAGTAAAGCATAACTGCTTGACATGGAGTTGATAGATTATTGTTGTTATAGGTACTTGGGACAGATGAGTTGAAT</genome_strand>
        <mrna_strand>TGGAAGAGGAAAATACAGAGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCGTAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGCCAGAGATCAGCATTCAAAAACTCCAGGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGGTTTGTACCCAACGCTAACAGACTATGACATACCGTACTACATATATGAGCTTCTCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTGCGGAAGCTTCGGTTGATAGATTGGGGTCTTGCCGAATTTTACCACCCAGGGAAGGAATATAATGTTCGTGTGGCTTCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTCAAGGGCCCTGAACTTCTAGTTGACTTGCAAGACTATGACTATTCTTTGGACATGTGGAGCCTTGGCTGCATGTTTGCAGGAATG..........................................................................................................................................................................................ATTTTACGCACGGAACCTTTCTTTTATGGCCATGATAATCAGGATCAGCTCGGTAAAATTGCAAAG..............................................................................................................................................................................................GTACTTGGGACAGATGAGTTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E397675" ref_strand="+" ref_description="SGN-E397675 [TUS-46-I14]">
      <seq>gtttttgaaggtataagagtctaactgccgggagaagtgcatagtcgagatcctgaaacctgttaagaagaaaaagatcaaaagagagataaagatattgcaaaatctctgtggtggaccaaatattgtcaaactccttgatatcgtcagagatcagcattcaaaaactccaagcttgatttttgagtacgtgaacagcacagatttcaaggttttgtacccaacgctaacagactatgacatacggtactacatatatgagcttctcaaggcactagattattgccattcacagggaataatgcacagggatgtcaaacctcataacgttatgatagaccatgaactgcggaagcttcgcttgatagattggggtcttgccgaattttaccacccagggaaggaatataatgttcgtgtggcttcaagaatacttcaagggccctgaacttctagttgacttgcaagactatgacaattctttggacatgtggagccttggctgcatgtttgccagaatgatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="86331" stop="90336"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86631" g_stop="86705" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.893"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86706" i_stop="87264" i_length="559">
            <donor d_prob="0.975" d_score="0.94"/>
            <acceptor a_prob="0.273" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87265" g_stop="87459" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="271" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87460" i_stop="88939" i_length="1480">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88940" g_stop="89097" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="429" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89098" i_stop="89943" i_length="846">
            <donor d_prob="0.568" d_score="1.00"/>
            <acceptor a_prob="0.911" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89944" g_stop="90034" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="521" r_length="92" r_score="0.945"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90035" i_stop="90220" i_length="186">
            <donor d_prob="0.930" d_score="0.94"/>
            <acceptor a_prob="0.941" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90221" g_stop="90225" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="526" r_length="5" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E397675" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397675" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86631" e_stop="86705"/>
          <exon e_start="87265" e_stop="87459"/>
          <exon e_start="88940" e_stop="89097"/>
          <exon e_start="89944" e_stop="90034"/>
          <exon e_start="90221" e_stop="90225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTGAAGGTATAAATGT-TAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAGGTATGACGTTTTTTGGCTGAATTAAGATTTCATTTTTCTGCTTCAAAAGGAAAAAAAATGAAGAAGTTTGCAGGAAGAGTTCTTCTGTAATGCAATACTTATTTTTTGTCTGACTTAATATCTATGGATAATCTTCAACATTAATGGAAGAATCTGTATCTAACTCATATAAAGGGGCTTAGTATCTATTGAGAATCATCAACATCGACAGGCTTAATGGAAAAATCTGTATTTAACTCATGAAAAAGACTACTCTCAATTATCTATCCATGTGGTTGATAGGGTGTCAAAGAAATAAGTGAAGTTTCTTTTTTGGAACTTTGGAAAAAATTCAGTTATGTTGTACGAAATGCATAATGCCTAGGTTCATCTCTTGATGACATTTTTTGATCGTTTTGGTAGTGTTATGCATCCACTGTTCATACACCTTTTGTCCTCCTATCCTTTCTTTAACTTAATTTTTAAATTAACACTGTTTTAGTTTGTAATATTGTGCTTTATACGGAAAAAAAGAAAAGAATATACATGCTTTTGACTTGACATTAGCGGTATCGTGTAGATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAGGTAAGATGATAAACACATCAGATGGCAGTCAATATGGCTTTTATGTATTCATGCTCCCTCTCCCCTGATTCTTTTTTTTTTTTTTAAGGAAGGTAACAGTTATATACTTCCTGTCCTCTTGGTCCTCCTTTTCTGTATCTTCTTTCTTCTCTCAGAACCAAGAATAGAGTTGTACTGATGTCTTAACTTACTATCTGGTCAAAACTTTGTTTGTCTCCAACATTTCCTTCTATTGCAGCTTTTCAAGGTTTGTATGAGTATGAGAATTTTGGGAGTCCCCAGTTTTCTTATGCTCAGCAACTATTTCTGAATTGAGTGGATATATTCTCATATACTATGATCAAATTATGAGATCAAACTATCAAAGTTATAACTCCTAGGCTCATCTCAAGTGGAAATTTTGGAATCCAAGATTCTGGTGCCATAAAACTGCACTAATTTGGATTCATCTTATATCTATATTTAGATAATTGGGAGTCTGTCGAATGTGTCTCGTGATCTTGGGTTAGTGGGAATGACTAAGACTGTAAACTCATATTTGTTCACCTTATCCTGCCTGCCAATACATGGATTTCAAATCCATCATCAAAAATGTAGATTTTTCTTATTGATATTGTCAGCTCATTCACTGTCTTGGTCATTCCAATTGATTACCTTTCCTCTGCAATTCGGTCTAAGTATAGCTTCTGAATGTGTTTTTTACAAGGTAAATGACCTCATAGTGAGGTGCTTACCATGTCTCTTGTTATCAGATGATATGAATTAGATTCACTGCATGCCTATTGGAAGTTGATTTTATATCTAGATTAATGGCTATGCTCGTTGTTACTCTTAACAATGTGACATTTTTTTTCTGACTTTGGATTTCTTAAGTAACTCTCTTGTATTCTTCTGATCTTATAATTGGTTAAGGAAAAAAAATTCACCAATGCCATGGATATTCTCTCCTCTGTTTGCTAATTGCTATTTAAATTTCATTTTCCTTTTTCACGAGTAATATTATATTCCCTTTTTGTCTGATTTGCGTGAGAGTAACTATTTGGAAATGGGGATGCTAATTATTGGATCCTGTTGATTTCTATCTCGAAGTTAGTTCTTCCTTTTTGCTACATGCCTACATCACCAGCCTACCTGATCATATGTCTAGGTTTCCTTTCTTTTGCCTCCTCCTGCGAAAAAAAGAAAAGAAATTTAACTTCTCAAGCTTTCTCATTGTGTATCAGCATAATTGTTTGTCAAATGCTAGATCTGTTCCTGCATACTTACTTTCCATTCGCTTAATTTACTCTATTAATTTCCCCTTCTTTTTTGAAAGAAAAGAAAGAATCACGTTTTTGGCATGACTGCTGAATTTGCTGAGGCCTTCATTTCTTGTGACAGTTGTTTAATAGACTCTTTGGGACCTATTCTTTGTGTACATTTCTTGACATGCTTACCAATTTATGGAGGTCGAAAACTGAAACTTCTTATCAACCTGCAGGCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCCGAATTTTACCACCCAGGGAAGGAATATAATGTTCGTGTGGCTTCAAGGTGAGATAATCTGCCGACAGTATGGCTGGACCGGCATAGTTGCTTTGCCAGCAACAACTTCCTACATATAGCATTGCTATTTGTAGATCCATGCTCTACTTGCAAATTATTCTCTGGACAAGTCATGAGTTTTTAATCAGAAAGCAAGTGACATTGTTATATATTTTTTAAGTCAGAAATAATAAAAGGAACATCATTCACTTACATATACAACAACTACCCGTCAGTTCCAAACTAGTCGGGGTCGTTATATGATTTTTGCTGTCCATGTTACTCCATTTAATCCCATATCTTGCGGACTTGTAAAGTTTAGAATCTCTATATTTTCTTAACTGACAAACTTCTGAAAAGCTAAAACACTCCTAGAAAGTATAGGACCTACAGGAAAATTCTAATATATTAATATATTCTCGACTAATATGTAGCATATATATAGAATTTTTTCTTCCATTGTGCCTTTCGTAAGTTCACATGGATCCTTAAAATTATAGGTCCTTAAAGACAACTTCCTTCCATGTGATTTTAGGTCTACTTCGTTTTTTAACAGCTCCACTCACCATAGTTTCACACTCAGGAGTCAGTGCATCAGGAGGGGTTAATGCAAGACATAATCAAATCATCTCAAGGAACAGCTGAGTTCTTAAAGAATACTTAAAACAATACCCATTAAAGAATACTTAAAACAATCAATGGGATTATAGGAAAAGGTTAGGAATTGTTTATGTAAAACTAATTCTGTATCAGCATAGCTGCATATGGGAAATTGGTTTTGTACCGTAAGTTAGTGGTTCATAAACTATCAATGCTATTGAAGCAAGTCTGAGTTCTTCTTTTCTTGCACTTCAG-ATACTTCAAGGGCCCTGAACTTCTAGTTGACTTGCAAGACTATGACTATTCTTTGGACATGTGGAGCCTTGGCTGCATGTTTGCAGGAATGGTGAGAAATTCTATGATTCATAATATAAGCTGTCAGTTGGTTTATAGTTTTATGCTATCAGTTGTGGGCCTGGGAAACTACAAACATCCGAAAGGACTTGTTAGAAGTTTGTATTTTGCTTATTTGAAATCAATTTTCCTTTTCCTCCTGTTTTCTTTGTGTCTGACCATACCTTTTCCTTGGTAGATTTT</genome_strand>
        <mrna_strand>GTTTTTGAAGGTATAAGAGTCTAACTGCCGGGAGAAGTGCATAGTCGAGATCCTGAAACCTGTTAAGAAGAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCCGAATTTTACCACCCAGGGAAGGAATATAATGTTCGTGTGGCTTCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATACTTCAAGGGCCCTGAACTTCTAGTTGACTTGCAAGACTATGACAATTCTTTGGACATGTGGAGCCTTGGCTGCATGTTTGCCAGAATG..........................................................................................................................................................................................ATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E252366" ref_strand="+" ref_description="SGN-E252366 [cLEG-12-K23]">
      <seq>gtttttgaaagtataaatgttaacagcaaggagaagtgcataatcaagatcctgaaacctgttaagaagaaaaagatcaaaagagagataaagatattgcaaaatctctgtggtggaccaaatattgtcaaactccttgatatcgtcagagatcagcattcaaaaactccaagcttgatttttgagtacgtgaacagcacagatttcaaggttttgtacccaacgctaacagactatgacatacggtactacatatatgagcttctcaaggcactagattattgccattcacagggaataatgcacagggatgtcaaacctcataacgttatgatagaccatgaactgcggaagcttcgcttgatagattggggtcttgccgaattttaccacccagggaaggaatataatgttcgtgtggcttcaagatacttcaagggccctgaacttctagttgacttgcaagactatgactattctttggacatgtggagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="86331" stop="90311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86631" g_stop="86705" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86706" i_stop="87264" i_length="559">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.273" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87265" g_stop="87459" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="270" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87460" i_stop="88939" i_length="1480">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88940" g_stop="89097" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="428" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89098" i_stop="89943" i_length="846">
            <donor d_prob="0.568" d_score="1.00"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89944" g_stop="90011" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="496" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E252366" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252366" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86631" e_stop="86705"/>
          <exon e_start="87265" e_stop="87459"/>
          <exon e_start="88940" e_stop="89097"/>
          <exon e_start="89944" e_stop="90011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAGGTATGACGTTTTTTGGCTGAATTAAGATTTCATTTTTCTGCTTCAAAAGGAAAAAAAATGAAGAAGTTTGCAGGAAGAGTTCTTCTGTAATGCAATACTTATTTTTTGTCTGACTTAATATCTATGGATAATCTTCAACATTAATGGAAGAATCTGTATCTAACTCATATAAAGGGGCTTAGTATCTATTGAGAATCATCAACATCGACAGGCTTAATGGAAAAATCTGTATTTAACTCATGAAAAAGACTACTCTCAATTATCTATCCATGTGGTTGATAGGGTGTCAAAGAAATAAGTGAAGTTTCTTTTTTGGAACTTTGGAAAAAATTCAGTTATGTTGTACGAAATGCATAATGCCTAGGTTCATCTCTTGATGACATTTTTTGATCGTTTTGGTAGTGTTATGCATCCACTGTTCATACACCTTTTGTCCTCCTATCCTTTCTTTAACTTAATTTTTAAATTAACACTGTTTTAGTTTGTAATATTGTGCTTTATACGGAAAAAAAGAAAAGAATATACATGCTTTTGACTTGACATTAGCGGTATCGTGTAGATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAGGTAAGATGATAAACACATCAGATGGCAGTCAATATGGCTTTTATGTATTCATGCTCCCTCTCCCCTGATTCTTTTTTTTTTTTTTAAGGAAGGTAACAGTTATATACTTCCTGTCCTCTTGGTCCTCCTTTTCTGTATCTTCTTTCTTCTCTCAGAACCAAGAATAGAGTTGTACTGATGTCTTAACTTACTATCTGGTCAAAACTTTGTTTGTCTCCAACATTTCCTTCTATTGCAGCTTTTCAAGGTTTGTATGAGTATGAGAATTTTGGGAGTCCCCAGTTTTCTTATGCTCAGCAACTATTTCTGAATTGAGTGGATATATTCTCATATACTATGATCAAATTATGAGATCAAACTATCAAAGTTATAACTCCTAGGCTCATCTCAAGTGGAAATTTTGGAATCCAAGATTCTGGTGCCATAAAACTGCACTAATTTGGATTCATCTTATATCTATATTTAGATAATTGGGAGTCTGTCGAATGTGTCTCGTGATCTTGGGTTAGTGGGAATGACTAAGACTGTAAACTCATATTTGTTCACCTTATCCTGCCTGCCAATACATGGATTTCAAATCCATCATCAAAAATGTAGATTTTTCTTATTGATATTGTCAGCTCATTCACTGTCTTGGTCATTCCAATTGATTACCTTTCCTCTGCAATTCGGTCTAAGTATAGCTTCTGAATGTGTTTTTTACAAGGTAAATGACCTCATAGTGAGGTGCTTACCATGTCTCTTGTTATCAGATGATATGAATTAGATTCACTGCATGCCTATTGGAAGTTGATTTTATATCTAGATTAATGGCTATGCTCGTTGTTACTCTTAACAATGTGACATTTTTTTTCTGACTTTGGATTTCTTAAGTAACTCTCTTGTATTCTTCTGATCTTATAATTGGTTAAGGAAAAAAAATTCACCAATGCCATGGATATTCTCTCCTCTGTTTGCTAATTGCTATTTAAATTTCATTTTCCTTTTTCACGAGTAATATTATATTCCCTTTTTGTCTGATTTGCGTGAGAGTAACTATTTGGAAATGGGGATGCTAATTATTGGATCCTGTTGATTTCTATCTCGAAGTTAGTTCTTCCTTTTTGCTACATGCCTACATCACCAGCCTACCTGATCATATGTCTAGGTTTCCTTTCTTTTGCCTCCTCCTGCGAAAAAAAGAAAAGAAATTTAACTTCTCAAGCTTTCTCATTGTGTATCAGCATAATTGTTTGTCAAATGCTAGATCTGTTCCTGCATACTTACTTTCCATTCGCTTAATTTACTCTATTAATTTCCCCTTCTTTTTTGAAAGAAAAGAAAGAATCACGTTTTTGGCATGACTGCTGAATTTGCTGAGGCCTTCATTTCTTGTGACAGTTGTTTAATAGACTCTTTGGGACCTATTCTTTGTGTACATTTCTTGACATGCTTACCAATTTATGGAGGTCGAAAACTGAAACTTCTTATCAACCTGCAGGCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCCGAATTTTACCACCCAGGGAAGGAATATAATGTTCGTGTGGCTTCAAGGTGAGATAATCTGCCGACAGTATGGCTGGACCGGCATAGTTGCTTTGCCAGCAACAACTTCCTACATATAGCATTGCTATTTGTAGATCCATGCTCTACTTGCAAATTATTCTCTGGACAAGTCATGAGTTTTTAATCAGAAAGCAAGTGACATTGTTATATATTTTTTAAGTCAGAAATAATAAAAGGAACATCATTCACTTACATATACAACAACTACCCGTCAGTTCCAAACTAGTCGGGGTCGTTATATGATTTTTGCTGTCCATGTTACTCCATTTAATCCCATATCTTGCGGACTTGTAAAGTTTAGAATCTCTATATTTTCTTAACTGACAAACTTCTGAAAAGCTAAAACACTCCTAGAAAGTATAGGACCTACAGGAAAATTCTAATATATTAATATATTCTCGACTAATATGTAGCATATATATAGAATTTTTTCTTCCATTGTGCCTTTCGTAAGTTCACATGGATCCTTAAAATTATAGGTCCTTAAAGACAACTTCCTTCCATGTGATTTTAGGTCTACTTCGTTTTTTAACAGCTCCACTCACCATAGTTTCACACTCAGGAGTCAGTGCATCAGGAGGGGTTAATGCAAGACATAATCAAATCATCTCAAGGAACAGCTGAGTTCTTAAAGAATACTTAAAACAATACCCATTAAAGAATACTTAAAACAATCAATGGGATTATAGGAAAAGGTTAGGAATTGTTTATGTAAAACTAATTCTGTATCAGCATAGCTGCATATGGGAAATTGGTTTTGTACCGTAAGTTAGTGGTTCATAAACTATCAATGCTATTGAAGCAAGTCTGAGTTCTTCTTTTCTTGCACTTCAGATACTTCAAGGGCCCTGAACTTCTAGTTGACTTGCAAGACTATGACTATTCTTTGGACATGTGGAGCC</genome_strand>
        <mrna_strand>GTTTTTGAAAGTATAAATGTTAACAGCAAGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCCGAATTTTACCACCCAGGGAAGGAATATAATGTTCGTGTGGCTTCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTCAAGGGCCCTGAACTTCTAGTTGACTTGCAAGACTATGACTATTCTTTGGACATGTGGAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E395258" ref_strand="+" ref_description="SGN-E395258 [TUS-46-G12]">
      <seq>gtttttgaaggtataaatgttaacagcagggagaagtgcataatcaagatcctgaaacctgttaagaagaaaaagatcaaaagagagataaagatattgcaaaatctctgtggtggaccaaatattgtcaaactccttgatatcgtcagagatcagcattcaaaaactccaagcttgatttttgagtacgtgaacagcacagatttcaaggttttgtacccaacgctaacagactatgacatacggtactacatatatgagcttctcaaggcactagattattgccattcacagggaataatgcacagggatgtcaaacctcataacgttatgatagaccatgaactgcggaagcttcgcttgatagattggggtcttgccgaattttaccacccagggaaggaatataatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="86331" stop="89381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86631" g_stop="86705" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86706" i_stop="87264" i_length="559">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.273" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87265" g_stop="87459" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="270" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87460" i_stop="88939" i_length="1480">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88940" g_stop="89081" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="412" r_length="142" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E395258" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395258" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86631" e_stop="86705"/>
          <exon e_start="87265" e_stop="87459"/>
          <exon e_start="88940" e_stop="89081"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAGGTATGACGTTTTTTGGCTGAATTAAGATTTCATTTTTCTGCTTCAAAAGGAAAAAAAATGAAGAAGTTTGCAGGAAGAGTTCTTCTGTAATGCAATACTTATTTTTTGTCTGACTTAATATCTATGGATAATCTTCAACATTAATGGAAGAATCTGTATCTAACTCATATAAAGGGGCTTAGTATCTATTGAGAATCATCAACATCGACAGGCTTAATGGAAAAATCTGTATTTAACTCATGAAAAAGACTACTCTCAATTATCTATCCATGTGGTTGATAGGGTGTCAAAGAAATAAGTGAAGTTTCTTTTTTGGAACTTTGGAAAAAATTCAGTTATGTTGTACGAAATGCATAATGCCTAGGTTCATCTCTTGATGACATTTTTTGATCGTTTTGGTAGTGTTATGCATCCACTGTTCATACACCTTTTGTCCTCCTATCCTTTCTTTAACTTAATTTTTAAATTAACACTGTTTTAGTTTGTAATATTGTGCTTTATACGGAAAAAAAGAAAAGAATATACATGCTTTTGACTTGACATTAGCGGTATCGTGTAGATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAGGTAAGATGATAAACACATCAGATGGCAGTCAATATGGCTTTTATGTATTCATGCTCCCTCTCCCCTGATTCTTTTTTTTTTTTTTAAGGAAGGTAACAGTTATATACTTCCTGTCCTCTTGGTCCTCCTTTTCTGTATCTTCTTTCTTCTCTCAGAACCAAGAATAGAGTTGTACTGATGTCTTAACTTACTATCTGGTCAAAACTTTGTTTGTCTCCAACATTTCCTTCTATTGCAGCTTTTCAAGGTTTGTATGAGTATGAGAATTTTGGGAGTCCCCAGTTTTCTTATGCTCAGCAACTATTTCTGAATTGAGTGGATATATTCTCATATACTATGATCAAATTATGAGATCAAACTATCAAAGTTATAACTCCTAGGCTCATCTCAAGTGGAAATTTTGGAATCCAAGATTCTGGTGCCATAAAACTGCACTAATTTGGATTCATCTTATATCTATATTTAGATAATTGGGAGTCTGTCGAATGTGTCTCGTGATCTTGGGTTAGTGGGAATGACTAAGACTGTAAACTCATATTTGTTCACCTTATCCTGCCTGCCAATACATGGATTTCAAATCCATCATCAAAAATGTAGATTTTTCTTATTGATATTGTCAGCTCATTCACTGTCTTGGTCATTCCAATTGATTACCTTTCCTCTGCAATTCGGTCTAAGTATAGCTTCTGAATGTGTTTTTTACAAGGTAAATGACCTCATAGTGAGGTGCTTACCATGTCTCTTGTTATCAGATGATATGAATTAGATTCACTGCATGCCTATTGGAAGTTGATTTTATATCTAGATTAATGGCTATGCTCGTTGTTACTCTTAACAATGTGACATTTTTTTTCTGACTTTGGATTTCTTAAGTAACTCTCTTGTATTCTTCTGATCTTATAATTGGTTAAGGAAAAAAAATTCACCAATGCCATGGATATTCTCTCCTCTGTTTGCTAATTGCTATTTAAATTTCATTTTCCTTTTTCACGAGTAATATTATATTCCCTTTTTGTCTGATTTGCGTGAGAGTAACTATTTGGAAATGGGGATGCTAATTATTGGATCCTGTTGATTTCTATCTCGAAGTTAGTTCTTCCTTTTTGCTACATGCCTACATCACCAGCCTACCTGATCATATGTCTAGGTTTCCTTTCTTTTGCCTCCTCCTGCGAAAAAAAGAAAAGAAATTTAACTTCTCAAGCTTTCTCATTGTGTATCAGCATAATTGTTTGTCAAATGCTAGATCTGTTCCTGCATACTTACTTTCCATTCGCTTAATTTACTCTATTAATTTCCCCTTCTTTTTTGAAAGAAAAGAAAGAATCACGTTTTTGGCATGACTGCTGAATTTGCTGAGGCCTTCATTTCTTGTGACAGTTGTTTAATAGACTCTTTGGGACCTATTCTTTGTGTACATTTCTTGACATGCTTACCAATTTATGGAGGTCGAAAACTGAAACTTCTTATCAACCTGCAGGCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCCGAATTTTACCACCCAGGGAAGGAATATAATG</genome_strand>
        <mrna_strand>GTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCCGAATTTTACCACCCAGGGAAGGAATATAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E397676" ref_strand="+" ref_description="SGN-E397676 [TUS-46-I16]">
      <seq>gtttttgaaggtataaatgttaacagcagggagaagtgcataatcaagatcctgaaacctgttaagaagaaaaagatcaaaagagagataaagatattgcaaaatctctgtggtggaccaaatattgtcaaactccttgatatcgtcagagatcagcattcaaaaactccaagcttgatttttgagtacgtgaacagcacagatttcaaggttttgtacccaacgctaacaaactatgacatacggtactacatatatgagcttctcaaggcactagattattgccattcgcagggaataatgcacagggatgtcaaacctcagatcgttatgatagaccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="86331" stop="89312"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86631" g_stop="86705" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86706" i_stop="87264" i_length="559">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.273" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87265" g_stop="87459" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="270" r_length="195" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87460" i_stop="88939" i_length="1480">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88940" g_stop="89012" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="343" r_length="73" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E397676" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>343</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86631" e_stop="86705"/>
          <exon e_start="87265" e_stop="87459"/>
          <exon e_start="88940" e_stop="89012"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAGGTATGACGTTTTTTGGCTGAATTAAGATTTCATTTTTCTGCTTCAAAAGGAAAAAAAATGAAGAAGTTTGCAGGAAGAGTTCTTCTGTAATGCAATACTTATTTTTTGTCTGACTTAATATCTATGGATAATCTTCAACATTAATGGAAGAATCTGTATCTAACTCATATAAAGGGGCTTAGTATCTATTGAGAATCATCAACATCGACAGGCTTAATGGAAAAATCTGTATTTAACTCATGAAAAAGACTACTCTCAATTATCTATCCATGTGGTTGATAGGGTGTCAAAGAAATAAGTGAAGTTTCTTTTTTGGAACTTTGGAAAAAATTCAGTTATGTTGTACGAAATGCATAATGCCTAGGTTCATCTCTTGATGACATTTTTTGATCGTTTTGGTAGTGTTATGCATCCACTGTTCATACACCTTTTGTCCTCCTATCCTTTCTTTAACTTAATTTTTAAATTAACACTGTTTTAGTTTGTAATATTGTGCTTTATACGGAAAAAAAGAAAAGAATATACATGCTTTTGACTTGACATTAGCGGTATCGTGTAGATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAGGTAAGATGATAAACACATCAGATGGCAGTCAATATGGCTTTTATGTATTCATGCTCCCTCTCCCCTGATTCTTTTTTTTTTTTTTAAGGAAGGTAACAGTTATATACTTCCTGTCCTCTTGGTCCTCCTTTTCTGTATCTTCTTTCTTCTCTCAGAACCAAGAATAGAGTTGTACTGATGTCTTAACTTACTATCTGGTCAAAACTTTGTTTGTCTCCAACATTTCCTTCTATTGCAGCTTTTCAAGGTTTGTATGAGTATGAGAATTTTGGGAGTCCCCAGTTTTCTTATGCTCAGCAACTATTTCTGAATTGAGTGGATATATTCTCATATACTATGATCAAATTATGAGATCAAACTATCAAAGTTATAACTCCTAGGCTCATCTCAAGTGGAAATTTTGGAATCCAAGATTCTGGTGCCATAAAACTGCACTAATTTGGATTCATCTTATATCTATATTTAGATAATTGGGAGTCTGTCGAATGTGTCTCGTGATCTTGGGTTAGTGGGAATGACTAAGACTGTAAACTCATATTTGTTCACCTTATCCTGCCTGCCAATACATGGATTTCAAATCCATCATCAAAAATGTAGATTTTTCTTATTGATATTGTCAGCTCATTCACTGTCTTGGTCATTCCAATTGATTACCTTTCCTCTGCAATTCGGTCTAAGTATAGCTTCTGAATGTGTTTTTTACAAGGTAAATGACCTCATAGTGAGGTGCTTACCATGTCTCTTGTTATCAGATGATATGAATTAGATTCACTGCATGCCTATTGGAAGTTGATTTTATATCTAGATTAATGGCTATGCTCGTTGTTACTCTTAACAATGTGACATTTTTTTTCTGACTTTGGATTTCTTAAGTAACTCTCTTGTATTCTTCTGATCTTATAATTGGTTAAGGAAAAAAAATTCACCAATGCCATGGATATTCTCTCCTCTGTTTGCTAATTGCTATTTAAATTTCATTTTCCTTTTTCACGAGTAATATTATATTCCCTTTTTGTCTGATTTGCGTGAGAGTAACTATTTGGAAATGGGGATGCTAATTATTGGATCCTGTTGATTTCTATCTCGAAGTTAGTTCTTCCTTTTTGCTACATGCCTACATCACCAGCCTACCTGATCATATGTCTAGGTTTCCTTTCTTTTGCCTCCTCCTGCGAAAAAAAGAAAAGAAATTTAACTTCTCAAGCTTTCTCATTGTGTATCAGCATAATTGTTTGTCAAATGCTAGATCTGTTCCTGCATACTTACTTTCCATTCGCTTAATTTACTCTATTAATTTCCCCTTCTTTTTTGAAAGAAAAGAAAGAATCACGTTTTTGGCATGACTGCTGAATTTGCTGAGGCCTTCATTTCTTGTGACAGTTGTTTAATAGACTCTTTGGGACCTATTCTTTGTGTACATTTCTTGACATGCTTACCAATTTATGGAGGTCGAAAACTGAAACTTCTTATCAACCTGCAGGCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATG</genome_strand>
        <mrna_strand>GTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAAACTATGACATACGGTACTACATATATGAGCTTCTCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTAGATTATTGCCATTCGCAGGGAATAATGCACAGGGATGTCAAACCTCAGATCGTTATGATAGACCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E445665" ref_strand="+" ref_description="SGN-E445665 [cSTA-18-I21]">
      <seq>gaagtgcataatcaagatcctgaaacctgttaagaagaaaaagatcaagagagagatcaaaatcttgcagaacctctgtggcggaccaaatgttgtcaaactccttgatattgtcagagaccagcactcaaaaacaccaagcttaatttttgagtatgtgaacagtacagatttcaaagtactgtacccaactttaacggattatgacatacgctactacatatatgagcttctcaaggcactagactattgtcattctcagggaataatgcacagagatgtcaagccacataatgttatgatagaccatgagttgcggaagcttcgcttgatagactggggtcttgctgaattttaccatccaggaaaggaatataatgtccgtgtggcttcaagatacttcaagggccctgaacttctagttgacttgcaagattatgactattctttggacatgtggagccttggatgcatgtttgcaggaatgatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="86363" stop="90336"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86663" g_stop="86705" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86706" i_stop="87264" i_length="559">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.273" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87265" g_stop="87459" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="238" r_length="195" r_score="0.882"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87460" i_stop="88939" i_length="1480">
            <donor d_prob="0.989" d_score="0.90"/>
            <acceptor a_prob="0.992" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88940" g_stop="89097" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="396" r_length="158" r_score="0.911"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89098" i_stop="89943" i_length="846">
            <donor d_prob="0.568" d_score="0.92"/>
            <acceptor a_prob="0.911" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89944" g_stop="90034" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="487" r_length="91" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E445665" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E445665" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86663" e_stop="86705"/>
          <exon e_start="87265" e_stop="87459"/>
          <exon e_start="88940" e_stop="89097"/>
          <exon e_start="89944" e_stop="90034"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAGGTATGACGTTTTTTGGCTGAATTAAGATTTCATTTTTCTGCTTCAAAAGGAAAAAAAATGAAGAAGTTTGCAGGAAGAGTTCTTCTGTAATGCAATACTTATTTTTTGTCTGACTTAATATCTATGGATAATCTTCAACATTAATGGAAGAATCTGTATCTAACTCATATAAAGGGGCTTAGTATCTATTGAGAATCATCAACATCGACAGGCTTAATGGAAAAATCTGTATTTAACTCATGAAAAAGACTACTCTCAATTATCTATCCATGTGGTTGATAGGGTGTCAAAGAAATAAGTGAAGTTTCTTTTTTGGAACTTTGGAAAAAATTCAGTTATGTTGTACGAAATGCATAATGCCTAGGTTCATCTCTTGATGACATTTTTTGATCGTTTTGGTAGTGTTATGCATCCACTGTTCATACACCTTTTGTCCTCCTATCCTTTCTTTAACTTAATTTTTAAATTAACACTGTTTTAGTTTGTAATATTGTGCTTTATACGGAAAAAAAGAAAAGAATATACATGCTTTTGACTTGACATTAGCGGTATCGTGTAGATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAGGTAAGATGATAAACACATCAGATGGCAGTCAATATGGCTTTTATGTATTCATGCTCCCTCTCCCCTGATTCTTTTTTTTTTTTTTAAGGAAGGTAACAGTTATATACTTCCTGTCCTCTTGGTCCTCCTTTTCTGTATCTTCTTTCTTCTCTCAGAACCAAGAATAGAGTTGTACTGATGTCTTAACTTACTATCTGGTCAAAACTTTGTTTGTCTCCAACATTTCCTTCTATTGCAGCTTTTCAAGGTTTGTATGAGTATGAGAATTTTGGGAGTCCCCAGTTTTCTTATGCTCAGCAACTATTTCTGAATTGAGTGGATATATTCTCATATACTATGATCAAATTATGAGATCAAACTATCAAAGTTATAACTCCTAGGCTCATCTCAAGTGGAAATTTTGGAATCCAAGATTCTGGTGCCATAAAACTGCACTAATTTGGATTCATCTTATATCTATATTTAGATAATTGGGAGTCTGTCGAATGTGTCTCGTGATCTTGGGTTAGTGGGAATGACTAAGACTGTAAACTCATATTTGTTCACCTTATCCTGCCTGCCAATACATGGATTTCAAATCCATCATCAAAAATGTAGATTTTTCTTATTGATATTGTCAGCTCATTCACTGTCTTGGTCATTCCAATTGATTACCTTTCCTCTGCAATTCGGTCTAAGTATAGCTTCTGAATGTGTTTTTTACAAGGTAAATGACCTCATAGTGAGGTGCTTACCATGTCTCTTGTTATCAGATGATATGAATTAGATTCACTGCATGCCTATTGGAAGTTGATTTTATATCTAGATTAATGGCTATGCTCGTTGTTACTCTTAACAATGTGACATTTTTTTTCTGACTTTGGATTTCTTAAGTAACTCTCTTGTATTCTTCTGATCTTATAATTGGTTAAGGAAAAAAAATTCACCAATGCCATGGATATTCTCTCCTCTGTTTGCTAATTGCTATTTAAATTTCATTTTCCTTTTTCACGAGTAATATTATATTCCCTTTTTGTCTGATTTGCGTGAGAGTAACTATTTGGAAATGGGGATGCTAATTATTGGATCCTGTTGATTTCTATCTCGAAGTTAGTTCTTCCTTTTTGCTACATGCCTACATCACCAGCCTACCTGATCATATGTCTAGGTTTCCTTTCTTTTGCCTCCTCCTGCGAAAAAAAGAAAAGAAATTTAACTTCTCAAGCTTTCTCATTGTGTATCAGCATAATTGTTTGTCAAATGCTAGATCTGTTCCTGCATACTTACTTTCCATTCGCTTAATTTACTCTATTAATTTCCCCTTCTTTTTTGAAAGAAAAGAAAGAATCACGTTTTTGGCATGACTGCTGAATTTGCTGAGGCCTTCATTTCTTGTGACAGTTGTTTAATAGACTCTTTGGGACCTATTCTTTGTGTACATTTCTTGACATGCTTACCAATTTATGGAGGTCGAAAACTGAAACTTCTTATCAACCTGCAGGCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCCGAATTTTACCACCCAGGGAAGGAATATAATGTTCGTGTGGCTTCAAGGTGAGATAATCTGCCGACAGTATGGCTGGACCGGCATAGTTGCTTTGCCAGCAACAACTTCCTACATATAGCATTGCTATTTGTAGATCCATGCTCTACTTGCAAATTATTCTCTGGACAAGTCATGAGTTTTTAATCAGAAAGCAAGTGACATTGTTATATATTTTTTAAGTCAGAAATAATAAAAGGAACATCATTCACTTACATATACAACAACTACCCGTCAGTTCCAAACTAGTCGGGGTCGTTATATGATTTTTGCTGTCCATGTTACTCCATTTAATCCCATATCTTGCGGACTTGTAAAGTTTAGAATCTCTATATTTTCTTAACTGACAAACTTCTGAAAAGCTAAAACACTCCTAGAAAGTATAGGACCTACAGGAAAATTCTAATATATTAATATATTCTCGACTAATATGTAGCATATATATAGAATTTTTTCTTCCATTGTGCCTTTCGTAAGTTCACATGGATCCTTAAAATTATAGGTCCTTAAAGACAACTTCCTTCCATGTGATTTTAGGTCTACTTCGTTTTTTAACAGCTCCACTCACCATAGTTTCACACTCAGGAGTCAGTGCATCAGGAGGGGTTAATGCAAGACATAATCAAATCATCTCAAGGAACAGCTGAGTTCTTAAAGAATACTTAAAACAATACCCATTAAAGAATACTTAAAACAATCAATGGGATTATAGGAAAAGGTTAGGAATTGTTTATGTAAAACTAATTCTGTATCAGCATAGCTGCATATGGGAAATTGGTTTTGTACCGTAAGTTAGTGGTTCATAAACTATCAATGCTATTGAAGCAAGTCTGAGTTCTTCTTTTCTTGCACTTCAGATACTTCAAGGGCCCTGAACTTCTAGTTGACTTGCAAGACTATGACTATTCTTTGGACATGTGGAGCCTTGGCTGCATGTTTGCAGGAATG</genome_strand>
        <mrna_strand>GAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGAGAGAGATCAAAATCTTGCAGAACCTCTGTGGCGGACCAAATGTTGTCAAACTCCTTGATATTGTCAGAGACCAGCACTCAAAAACACCAAGCTTAATTTTTGAGTATGTGAACAGTACAGATTTCAAAGTACTGTACCCAACTTTAACGGATTATGACATACGCTACTACATATATGAGCTTCTCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTAGACTATTGTCATTCTCAGGGAATAATGCACAGAGATGTCAAGCCACATAATGTTATGATAGACCATGAGTTGCGGAAGCTTCGCTTGATAGACTGGGGTCTTGCTGAATTTTACCATCCAGGAAAGGAATATAATGTCCGTGTGGCTTCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTCAAGGGCCCTGAACTTCTAGTTGACTTGCAAGATTATGACTATTCTTTGGACATGTGGAGCCTTGGATGCATGTTTGCAGGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E604902" ref_strand="-" ref_description="SGN-E604902 [56919]">
      <seq>tttagtttgtaatattgtgctttctattggaaaaaaaaacaaaaagaatatgcatgcttttgacttgatattagtggtgttgtgtagatcaaaagagagataaagatattgcaaaacctctgtggtggaccaaacattgtcaaactccttgatatcgtcagagatcagcattcaaaaactccaagcttgatttttgagtacgtgaacagcacagatttcaaggttttgtacccaacgctaacagattacgacatacggtactacatatatgagcttctcaaggcactagattattgccattcacagggaataatgcatagggatgtcaagcctcataacgttatgatagatcatgaactgcggaagcttcgcttgatagattggggtcttgctgaattttaccacccagggaaggaatataatgttcgtgtggcttcaagatatttcaagggcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="86911" stop="89406"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87182" g_stop="87459" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87460" i_stop="88939" i_length="1480">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88940" g_stop="89097" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="440" r_length="158" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E604902" ref_strand="-">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E604902" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="87182" e_stop="87459"/>
          <exon e_start="88940" e_stop="89097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGTTTGTAATATTGTGCTTTATA-CGG-A-AAAAAA-GAAAAGAATATACATGCTTTTGACTTGACATTAGCGGTATCGTGTAGATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAGGTAAGATGATAAACACATCAGATGGCAGTCAATATGGCTTTTATGTATTCATGCTCCCTCTCCCCTGATTCTTTTTTTTTTTTTTAAGGAAGGTAACAGTTATATACTTCCTGTCCTCTTGGTCCTCCTTTTCTGTATCTTCTTTCTTCTCTCAGAACCAAGAATAGAGTTGTACTGATGTCTTAACTTACTATCTGGTCAAAACTTTGTTTGTCTCCAACATTTCCTTCTATTGCAGCTTTTCAAGGTTTGTATGAGTATGAGAATTTTGGGAGTCCCCAGTTTTCTTATGCTCAGCAACTATTTCTGAATTGAGTGGATATATTCTCATATACTATGATCAAATTATGAGATCAAACTATCAAAGTTATAACTCCTAGGCTCATCTCAAGTGGAAATTTTGGAATCCAAGATTCTGGTGCCATAAAACTGCACTAATTTGGATTCATCTTATATCTATATTTAGATAATTGGGAGTCTGTCGAATGTGTCTCGTGATCTTGGGTTAGTGGGAATGACTAAGACTGTAAACTCATATTTGTTCACCTTATCCTGCCTGCCAATACATGGATTTCAAATCCATCATCAAAAATGTAGATTTTTCTTATTGATATTGTCAGCTCATTCACTGTCTTGGTCATTCCAATTGATTACCTTTCCTCTGCAATTCGGTCTAAGTATAGCTTCTGAATGTGTTTTTTACAAGGTAAATGACCTCATAGTGAGGTGCTTACCATGTCTCTTGTTATCAGATGATATGAATTAGATTCACTGCATGCCTATTGGAAGTTGATTTTATATCTAGATTAATGGCTATGCTCGTTGTTACTCTTAACAATGTGACATTTTTTTTCTGACTTTGGATTTCTTAAGTAACTCTCTTGTATTCTTCTGATCTTATAATTGGTTAAGGAAAAAAAATTCACCAATGCCATGGATATTCTCTCCTCTGTTTGCTAATTGCTATTTAAATTTCATTTTCCTTTTTCACGAGTAATATTATATTCCCTTTTTGTCTGATTTGCGTGAGAGTAACTATTTGGAAATGGGGATGCTAATTATTGGATCCTGTTGATTTCTATCTCGAAGTTAGTTCTTCCTTTTTGCTACATGCCTACATCACCAGCCTACCTGATCATATGTCTAGGTTTCCTTTCTTTTGCCTCCTCCTGCGAAAAAAAGAAAAGAAATTTAACTTCTCAAGCTTTCTCATTGTGTATCAGCATAATTGTTTGTCAAATGCTAGATCTGTTCCTGCATACTTACTTTCCATTCGCTTAATTTACTCTATTAATTTCCCCTTCTTTTTTGAAAGAAAAGAAAGAATCACGTTTTTGGCATGACTGCTGAATTTGCTGAGGCCTTCATTTCTTGTGACAGTTGTTTAATAGACTCTTTGGGACCTATTCTTTGTGTACATTTCTTGACATGCTTACCAATTTATGGAGGTCGAAAACTGAAACTTCTTATCAACCTGCAGGCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCCGAATTTTACCACCCAGGGAAGGAATATAATGTTCGTGTGGCTTCAAG</genome_strand>
        <mrna_strand>TTTAGTTTGTAATATTGTGCTTTCTATTGGAAAAAAAAACAAAAAGAATATGCATGCTTTTGACTTGATATTAGTGGTGTTGTGTAGATCAAAAGAGAGATAAAGATATTGCAAAACCTCTGTGGTGGACCAAACATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGATTACGACATACGGTACTACATATATGAGCTTCTCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTAGATTATTGCCATTCACAGGGAATAATGCATAGGGATGTCAAGCCTCATAACGTTATGATAGATCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCTGAATTTTACCACCCAGGGAAGGAATATAATGTTCGTGTGGCTTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E206632" ref_strand="+" ref_description="SGN-E206632 [cLEC-31-J9]">
      <seq>gaccagcactcaaaaacaccaagcttaatttttgagtatgtgaacagtacagatttcaaagtactgtacccaacattaacggattatgacatacgctactacatatatgagcttctcaaggcactagactattgtcattctcagggaataatgcacagagatgtcaagccacataatgttatgatagaccatgagttgcggaagcttcgcttgatagactggggtcttgctgaattttaccatccaggaaaggaatataatgtccgtgtggcttcaagatacttcaagggccctgaacttctagttgacttgcaagactatgactattctttggacatgtggagccttggatgcatgtttgcaggaatgatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="87040" stop="90336"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87340" g_stop="87459" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="0.883"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87460" i_stop="88939" i_length="1480">
            <donor d_prob="0.989" d_score="0.90"/>
            <acceptor a_prob="0.992" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88940" g_stop="89097" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="278" r_length="158" r_score="0.911"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89098" i_stop="89943" i_length="846">
            <donor d_prob="0.568" d_score="0.92"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89944" g_stop="90034" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="369" r_length="91" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E206632" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206632" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87340" e_stop="87459"/>
          <exon e_start="88940" e_stop="89097"/>
          <exon e_start="89944" e_stop="90034"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAGGTAAGATGATAAACACATCAGATGGCAGTCAATATGGCTTTTATGTATTCATGCTCCCTCTCCCCTGATTCTTTTTTTTTTTTTTAAGGAAGGTAACAGTTATATACTTCCTGTCCTCTTGGTCCTCCTTTTCTGTATCTTCTTTCTTCTCTCAGAACCAAGAATAGAGTTGTACTGATGTCTTAACTTACTATCTGGTCAAAACTTTGTTTGTCTCCAACATTTCCTTCTATTGCAGCTTTTCAAGGTTTGTATGAGTATGAGAATTTTGGGAGTCCCCAGTTTTCTTATGCTCAGCAACTATTTCTGAATTGAGTGGATATATTCTCATATACTATGATCAAATTATGAGATCAAACTATCAAAGTTATAACTCCTAGGCTCATCTCAAGTGGAAATTTTGGAATCCAAGATTCTGGTGCCATAAAACTGCACTAATTTGGATTCATCTTATATCTATATTTAGATAATTGGGAGTCTGTCGAATGTGTCTCGTGATCTTGGGTTAGTGGGAATGACTAAGACTGTAAACTCATATTTGTTCACCTTATCCTGCCTGCCAATACATGGATTTCAAATCCATCATCAAAAATGTAGATTTTTCTTATTGATATTGTCAGCTCATTCACTGTCTTGGTCATTCCAATTGATTACCTTTCCTCTGCAATTCGGTCTAAGTATAGCTTCTGAATGTGTTTTTTACAAGGTAAATGACCTCATAGTGAGGTGCTTACCATGTCTCTTGTTATCAGATGATATGAATTAGATTCACTGCATGCCTATTGGAAGTTGATTTTATATCTAGATTAATGGCTATGCTCGTTGTTACTCTTAACAATGTGACATTTTTTTTCTGACTTTGGATTTCTTAAGTAACTCTCTTGTATTCTTCTGATCTTATAATTGGTTAAGGAAAAAAAATTCACCAATGCCATGGATATTCTCTCCTCTGTTTGCTAATTGCTATTTAAATTTCATTTTCCTTTTTCACGAGTAATATTATATTCCCTTTTTGTCTGATTTGCGTGAGAGTAACTATTTGGAAATGGGGATGCTAATTATTGGATCCTGTTGATTTCTATCTCGAAGTTAGTTCTTCCTTTTTGCTACATGCCTACATCACCAGCCTACCTGATCATATGTCTAGGTTTCCTTTCTTTTGCCTCCTCCTGCGAAAAAAAGAAAAGAAATTTAACTTCTCAAGCTTTCTCATTGTGTATCAGCATAATTGTTTGTCAAATGCTAGATCTGTTCCTGCATACTTACTTTCCATTCGCTTAATTTACTCTATTAATTTCCCCTTCTTTTTTGAAAGAAAAGAAAGAATCACGTTTTTGGCATGACTGCTGAATTTGCTGAGGCCTTCATTTCTTGTGACAGTTGTTTAATAGACTCTTTGGGACCTATTCTTTGTGTACATTTCTTGACATGCTTACCAATTTATGGAGGTCGAAAACTGAAACTTCTTATCAACCTGCAGGCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCCGAATTTTACCACCCAGGGAAGGAATATAATGTTCGTGTGGCTTCAAGGTGAGATAATCTGCCGACAGTATGGCTGGACCGGCATAGTTGCTTTGCCAGCAACAACTTCCTACATATAGCATTGCTATTTGTAGATCCATGCTCTACTTGCAAATTATTCTCTGGACAAGTCATGAGTTTTTAATCAGAAAGCAAGTGACATTGTTATATATTTTTTAAGTCAGAAATAATAAAAGGAACATCATTCACTTACATATACAACAACTACCCGTCAGTTCCAAACTAGTCGGGGTCGTTATATGATTTTTGCTGTCCATGTTACTCCATTTAATCCCATATCTTGCGGACTTGTAAAGTTTAGAATCTCTATATTTTCTTAACTGACAAACTTCTGAAAAGCTAAAACACTCCTAGAAAGTATAGGACCTACAGGAAAATTCTAATATATTAATATATTCTCGACTAATATGTAGCATATATATAGAATTTTTTCTTCCATTGTGCCTTTCGTAAGTTCACATGGATCCTTAAAATTATAGGTCCTTAAAGACAACTTCCTTCCATGTGATTTTAGGTCTACTTCGTTTTTTAACAGCTCCACTCACCATAGTTTCACACTCAGGAGTCAGTGCATCAGGAGGGGTTAATGCAAGACATAATCAAATCATCTCAAGGAACAGCTGAGTTCTTAAAGAATACTTAAAACAATACCCATTAAAGAATACTTAAAACAATCAATGGGATTATAGGAAAAGGTTAGGAATTGTTTATGTAAAACTAATTCTGTATCAGCATAGCTGCATATGGGAAATTGGTTTTGTACCGTAAGTTAGTGGTTCATAAACTATCAATGCTATTGAAGCAAGTCTGAGTTCTTCTTTTCTTGCACTTCAGATACTTCAAGGGCCCTGAACTTCTAGTTGACTTGCAAGACTATGACTATTCTTTGGACATGTGGAGCCTTGGCTGCATGTTTGCAGGAATG</genome_strand>
        <mrna_strand>GACCAGCACTCAAAAACACCAAGCTTAATTTTTGAGTATGTGAACAGTACAGATTTCAAAGTACTGTACCCAACATTAACGGATTATGACATACGCTACTACATATATGAGCTTCTCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTAGACTATTGTCATTCTCAGGGAATAATGCACAGAGATGTCAAGCCACATAATGTTATGATAGACCATGAGTTGCGGAAGCTTCGCTTGATAGACTGGGGTCTTGCTGAATTTTACCATCCAGGAAAGGAATATAATGTCCGTGTGGCTTCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTCAAGGGCCCTGAACTTCTAGTTGACTTGCAAGACTATGACTATTCTTTGGACATGTGGAGCCTTGGATGCATGTTTGCAGGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E619679" ref_strand="-" ref_description="SGN-E619679 [70372]">
      <seq>ttttgtacccaacgctaacagattacgacatacggtactacatatatgagcttctcaaggcactagattattgccattcacagggaataatgcatagggatgtcaagcctcataacgttatgatagatcatgaactgcggaagcttcgcttgatagattggggtcttgctgaattttaccacccagggaaggaatataatgttcgtgtggcttcaagatatttcaagggccctgaacttctagttgacttgcaagactacgactattctttggacatgtggagccttggctgcatgtttgcaggaatgattttccgcaaggaacctttcttttatggccatgataatcaagatcagctcgtcaaaattgcaaaggtacttgggacagatgggttgaatgcatatttgcacaagtatcaactagagcttgatcctcagctagaggctatggttgggagacacagtaggaagccgtggtccaaatttattaatgcataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="87101" stop="91086"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87401" g_stop="87459" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87460" i_stop="88939" i_length="1480">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88940" g_stop="89097" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="217" r_length="158" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89098" i_stop="89943" i_length="846">
            <donor d_prob="0.568" d_score="0.98"/>
            <acceptor a_prob="0.911" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89944" g_stop="90034" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="308" r_length="91" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90035" i_stop="90220" i_length="186">
            <donor d_prob="0.930" d_score="0.98"/>
            <acceptor a_prob="0.941" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90221" g_stop="90286" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="374" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90287" i_stop="90476" i_length="190">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90477" g_stop="90559" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="457" r_length="83" r_score="0.964"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90560" i_stop="90747" i_length="188">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="90748" g_stop="90787" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="497" r_length="40" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E619679" ref_strand="-">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E619679" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="87401" e_stop="87459"/>
          <exon e_start="88940" e_stop="89097"/>
          <exon e_start="89944" e_stop="90034"/>
          <exon e_start="90221" e_stop="90286"/>
          <exon e_start="90477" e_stop="90559"/>
          <exon e_start="90748" e_stop="90787"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAGGTAAGATGATAAACACATCAGATGGCAGTCAATATGGCTTTTATGTATTCATGCTCCCTCTCCCCTGATTCTTTTTTTTTTTTTTAAGGAAGGTAACAGTTATATACTTCCTGTCCTCTTGGTCCTCCTTTTCTGTATCTTCTTTCTTCTCTCAGAACCAAGAATAGAGTTGTACTGATGTCTTAACTTACTATCTGGTCAAAACTTTGTTTGTCTCCAACATTTCCTTCTATTGCAGCTTTTCAAGGTTTGTATGAGTATGAGAATTTTGGGAGTCCCCAGTTTTCTTATGCTCAGCAACTATTTCTGAATTGAGTGGATATATTCTCATATACTATGATCAAATTATGAGATCAAACTATCAAAGTTATAACTCCTAGGCTCATCTCAAGTGGAAATTTTGGAATCCAAGATTCTGGTGCCATAAAACTGCACTAATTTGGATTCATCTTATATCTATATTTAGATAATTGGGAGTCTGTCGAATGTGTCTCGTGATCTTGGGTTAGTGGGAATGACTAAGACTGTAAACTCATATTTGTTCACCTTATCCTGCCTGCCAATACATGGATTTCAAATCCATCATCAAAAATGTAGATTTTTCTTATTGATATTGTCAGCTCATTCACTGTCTTGGTCATTCCAATTGATTACCTTTCCTCTGCAATTCGGTCTAAGTATAGCTTCTGAATGTGTTTTTTACAAGGTAAATGACCTCATAGTGAGGTGCTTACCATGTCTCTTGTTATCAGATGATATGAATTAGATTCACTGCATGCCTATTGGAAGTTGATTTTATATCTAGATTAATGGCTATGCTCGTTGTTACTCTTAACAATGTGACATTTTTTTTCTGACTTTGGATTTCTTAAGTAACTCTCTTGTATTCTTCTGATCTTATAATTGGTTAAGGAAAAAAAATTCACCAATGCCATGGATATTCTCTCCTCTGTTTGCTAATTGCTATTTAAATTTCATTTTCCTTTTTCACGAGTAATATTATATTCCCTTTTTGTCTGATTTGCGTGAGAGTAACTATTTGGAAATGGGGATGCTAATTATTGGATCCTGTTGATTTCTATCTCGAAGTTAGTTCTTCCTTTTTGCTACATGCCTACATCACCAGCCTACCTGATCATATGTCTAGGTTTCCTTTCTTTTGCCTCCTCCTGCGAAAAAAAGAAAAGAAATTTAACTTCTCAAGCTTTCTCATTGTGTATCAGCATAATTGTTTGTCAAATGCTAGATCTGTTCCTGCATACTTACTTTCCATTCGCTTAATTTACTCTATTAATTTCCCCTTCTTTTTTGAAAGAAAAGAAAGAATCACGTTTTTGGCATGACTGCTGAATTTGCTGAGGCCTTCATTTCTTGTGACAGTTGTTTAATAGACTCTTTGGGACCTATTCTTTGTGTACATTTCTTGACATGCTTACCAATTTATGGAGGTCGAAAACTGAAACTTCTTATCAACCTGCAGGCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCCGAATTTTACCACCCAGGGAAGGAATATAATGTTCGTGTGGCTTCAAGGTGAGATAATCTGCCGACAGTATGGCTGGACCGGCATAGTTGCTTTGCCAGCAACAACTTCCTACATATAGCATTGCTATTTGTAGATCCATGCTCTACTTGCAAATTATTCTCTGGACAAGTCATGAGTTTTTAATCAGAAAGCAAGTGACATTGTTATATATTTTTTAAGTCAGAAATAATAAAAGGAACATCATTCACTTACATATACAACAACTACCCGTCAGTTCCAAACTAGTCGGGGTCGTTATATGATTTTTGCTGTCCATGTTACTCCATTTAATCCCATATCTTGCGGACTTGTAAAGTTTAGAATCTCTATATTTTCTTAACTGACAAACTTCTGAAAAGCTAAAACACTCCTAGAAAGTATAGGACCTACAGGAAAATTCTAATATATTAATATATTCTCGACTAATATGTAGCATATATATAGAATTTTTTCTTCCATTGTGCCTTTCGTAAGTTCACATGGATCCTTAAAATTATAGGTCCTTAAAGACAACTTCCTTCCATGTGATTTTAGGTCTACTTCGTTTTTTAACAGCTCCACTCACCATAGTTTCACACTCAGGAGTCAGTGCATCAGGAGGGGTTAATGCAAGACATAATCAAATCATCTCAAGGAACAGCTGAGTTCTTAAAGAATACTTAAAACAATACCCATTAAAGAATACTTAAAACAATCAATGGGATTATAGGAAAAGGTTAGGAATTGTTTATGTAAAACTAATTCTGTATCAGCATAGCTGCATATGGGAAATTGGTTTTGTACCGTAAGTTAGTGGTTCATAAACTATCAATGCTATTGAAGCAAGTCTGAGTTCTTCTTTTCTTGCACTTCAGATACTTCAAGGGCCCTGAACTTCTAGTTGACTTGCAAGACTATGACTATTCTTTGGACATGTGGAGCCTTGGCTGCATGTTTGCAGGAATGGTGAGAAATTCTATGATTCATAATATAAGCTGTCAGTTGGTTTATAGTTTTATGCTATCAGTTGTGGGCCTGGGAAACTACAAACATCCGAAAGGACTTGTTAGAAGTTTGTATTTTGCTTATTTGAAATCAATTTTCCTTTTCCTCCTGTTTTCTTTGTGTCTGACCATACCTTTTCCTTGGTAGATTTTCCGCAAGGAACCTTTCTTTTATGGCCATGATAATCAGGATCAGCTCGTCAAAATTGCAAAGGTAATGCGTAGTAACTGACCAGTGACCAATGGGTTTATATACCTTAATTTTGTTGTTTGAGTGAGAGGGGGGAAGTTGATCATCTGAAAACAACCAAAGAAGTTGTTACTTCAGTTGCAAGTGAACACTCAATTTATAGAAGTAAAGCATAACTGCTTGACATGGAGTTGATAGATTATTGTTGTTATAGGTACTTGGGACAGATGAGTTGAATGCGTACTTGCACAAGTATCAACTAGAGCTTGATCCTCAGCTAGAGGCTATGGTTGGGAGGTATGCTTCTTGCTTTATCGCCAAGATAAAACTACGCTAAGGCAATTTGCAAAATAACTTAGAGCTGTGACTAAATAGGGTTACCAAGTTGATCTTAGCAACTAGCTTTAGCAGATGTGTGTCCTCTCTCATTAATTGCCAAAATTCTTAGCTATTGAAGGTGAATACAATCTGTCTTTCCCCTGCAGACACAGTAGGAAGCCGTGGTCCAAATTTATTAATGCAGAC</genome_strand>
        <mrna_strand>TTTTGTACCCAACGCTAACAGATTACGACATACGGTACTACATATATGAGCTTCTCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTAGATTATTGCCATTCACAGGGAATAATGCATAGGGATGTCAAGCCTCATAACGTTATGATAGATCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCTGAATTTTACCACCCAGGGAAGGAATATAATGTTCGTGTGGCTTCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTTCAAGGGCCCTGAACTTCTAGTTGACTTGCAAGACTACGACTATTCTTTGGACATGTGGAGCCTTGGCTGCATGTTTGCAGGAATG..........................................................................................................................................................................................ATTTTCCGCAAGGAACCTTTCTTTTATGGCCATGATAATCAAGATCAGCTCGTCAAAATTGCAAAG..............................................................................................................................................................................................GTACTTGGGACAGATGGGTTGAATGCATATTTGCACAAGTATCAACTAGAGCTTGATCCTCAGCTAGAGGCTATGGTTGGGAG............................................................................................................................................................................................ACACAGTAGGAAGCCGTGGTCCAAATTTATTAATGCATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E540224" ref_strand="+" ref_description="SGN-E540224 [TUS-60-G7](-)">
      <seq>tagattattgccattcacagggaataatgcacagggatgtcaaacctcataacgttatgatagaccatgaactgcggaagcttcgcttgatagattggggtcttgccgaattttaccacccagggaaggaatataatgttcgtgtggcttcaagatacttcaagggccctgaacttctagttgacttgcaagactatgactattctttggacatgtggagccttggctgcatgtttgcaggaatgattttccgcaaggaacctttcttttatggccatgataatcaggatcagctcgtcaaaattgcaaaggtacttgggacagatgagttgaatgcgtacttgcacaagtatcaactagagcttgatcctcagctagaggctatggttgggagacacagtaggaagccgtggtccaaatttattaatgcagacaatcagcatctagtgtcaccggaggctatagattatcttgacaagcttctccgttacgatcatcagactagacttacggcaaaagaagcaatggcccatccatatttcgggcaagtgagggctgctgaaactagcagaatgaggacacagtagctttcttgtcttgctgttaatgggaagaaaaaaaactgtgtaatgtaccttgtgtatccatttaagtgacattcgtgagaactatgtggatttgaacttgagcagacatctgaattcaggaattacagatcttcatcattgaacatttcaagagaaatagtgttttttaaaaaaaaaaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="88644" stop="92010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88944" g_stop="89097" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89098" i_stop="89943" i_length="846">
            <donor d_prob="0.568" d_score="1.00"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89944" g_stop="90034" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="245" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90035" i_stop="90220" i_length="186">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90221" g_stop="90286" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="311" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90287" i_stop="90476" i_length="190">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90477" g_stop="90559" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="394" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90560" i_stop="90747" i_length="188">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90748" g_stop="90811" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="458" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90812" i_stop="90946" i_length="135">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="90947" g_stop="91015" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="527" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="91016" i_stop="91479" i_length="464">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="91480" g_stop="91709" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="757" r_length="230" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="758" polyA_stop="775"/>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E540224" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540224" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88944" e_stop="89097"/>
          <exon e_start="89944" e_stop="90034"/>
          <exon e_start="90221" e_stop="90286"/>
          <exon e_start="90477" e_stop="90559"/>
          <exon e_start="90748" e_stop="90811"/>
          <exon e_start="90947" e_stop="91015"/>
          <exon e_start="91480" e_stop="91709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCCGAATTTTACCACCCAGGGAAGGAATATAATGTTCGTGTGGCTTCAAGGTGAGATAATCTGCCGACAGTATGGCTGGACCGGCATAGTTGCTTTGCCAGCAACAACTTCCTACATATAGCATTGCTATTTGTAGATCCATGCTCTACTTGCAAATTATTCTCTGGACAAGTCATGAGTTTTTAATCAGAAAGCAAGTGACATTGTTATATATTTTTTAAGTCAGAAATAATAAAAGGAACATCATTCACTTACATATACAACAACTACCCGTCAGTTCCAAACTAGTCGGGGTCGTTATATGATTTTTGCTGTCCATGTTACTCCATTTAATCCCATATCTTGCGGACTTGTAAAGTTTAGAATCTCTATATTTTCTTAACTGACAAACTTCTGAAAAGCTAAAACACTCCTAGAAAGTATAGGACCTACAGGAAAATTCTAATATATTAATATATTCTCGACTAATATGTAGCATATATATAGAATTTTTTCTTCCATTGTGCCTTTCGTAAGTTCACATGGATCCTTAAAATTATAGGTCCTTAAAGACAACTTCCTTCCATGTGATTTTAGGTCTACTTCGTTTTTTAACAGCTCCACTCACCATAGTTTCACACTCAGGAGTCAGTGCATCAGGAGGGGTTAATGCAAGACATAATCAAATCATCTCAAGGAACAGCTGAGTTCTTAAAGAATACTTAAAACAATACCCATTAAAGAATACTTAAAACAATCAATGGGATTATAGGAAAAGGTTAGGAATTGTTTATGTAAAACTAATTCTGTATCAGCATAGCTGCATATGGGAAATTGGTTTTGTACCGTAAGTTAGTGGTTCATAAACTATCAATGCTATTGAAGCAAGTCTGAGTTCTTCTTTTCTTGCACTTCAGATACTTCAAGGGCCCTGAACTTCTAGTTGACTTGCAAGACTATGACTATTCTTTGGACATGTGGAGCCTTGGCTGCATGTTTGCAGGAATGGTGAGAAATTCTATGATTCATAATATAAGCTGTCAGTTGGTTTATAGTTTTATGCTATCAGTTGTGGGCCTGGGAAACTACAAACATCCGAAAGGACTTGTTAGAAGTTTGTATTTTGCTTATTTGAAATCAATTTTCCTTTTCCTCCTGTTTTCTTTGTGTCTGACCATACCTTTTCCTTGGTAGATTTTCCGCAAGGAACCTTTCTTTTATGGCCATGATAATCAGGATCAGCTCGTCAAAATTGCAAAGGTAATGCGTAGTAACTGACCAGTGACCAATGGGTTTATATACCTTAATTTTGTTGTTTGAGTGAGAGGGGGGAAGTTGATCATCTGAAAACAACCAAAGAAGTTGTTACTTCAGTTGCAAGTGAACACTCAATTTATAGAAGTAAAGCATAACTGCTTGACATGGAGTTGATAGATTATTGTTGTTATAGGTACTTGGGACAGATGAGTTGAATGCGTACTTGCACAAGTATCAACTAGAGCTTGATCCTCAGCTAGAGGCTATGGTTGGGAGGTATGCTTCTTGCTTTATCGCCAAGATAAAACTACGCTAAGGCAATTTGCAAAATAACTTAGAGCTGTGACTAAATAGGGTTACCAAGTTGATCTTAGCAACTAGCTTTAGCAGATGTGTGTCCTCTCTCATTAATTGCCAAAATTCTTAGCTATTGAAGGTGAATACAATCTGTCTTTCCCCTGCAGACACAGTAGGAAGCCGTGGTCCAAATTTATTAATGCAGACAATCAGCATCTAGTGTCACCGGAGGTACTCTTCTCTCTCTATTTATGTATCTATGGTATTTCTGAATAAGACGAAACCAGCAATGGTGACAAGTACATCTCAACCAATTGGCTGTTCTTCACTACCCACTTGATAATTGATTTTGGCTTCTCATTGCAGGCTATAGATTATCTTGACAAGCTTCTCCGTTACGATCATCAGACTAGACTTACGGCAAAAGAAGCAATGGTAATCCTCTTTATCCACTATTAATGAGCTTTAAACTCTGAGCCTCATCATTTTCTTCTCAGCTTCTGTCTTATATTGGTTTACTATTGCTTATTAAAGAAAATGGTTTCGTGACATTTTAAAACACATACTTTACCAAAACCAAAATGTAAGGTTATAAATAAATGAGATCAGTGAGGATGAGTGGGTGAAGAGACGCAACTTGACTAGTTTTTTGTTTTGAAATTCTGTTAGAAACAAGCTGGTGATTGTGAAGTGTCAGTGCTTTCTGTTTCTGCTCTTGGCTATGTTTTTTTCCTTTGTCATGATGTTGCATCTGCATCTTTCCTGGAATCAATCCACTCTCCCTTCTCAATTATTTCTTTTAACAACACTATACATGTATTTGTTTTGTTTTGCACAACTAGAGTATTGAACAGTGTGTTGGGAAACCTACTAACTGCTTTCTCTGCCCTGTTTCTTAGGCCCATCCATATTTCGGGCAAGTGAGGGCTGCTGAAACTAGCAGAATGAGGACACAGTAGCTTTCTTGTCTTGCTGTTAATGGGAAGAAAAAAAACTGTGTAATGTACCTTGTGTATCCATTTAAGTGACATTCGTGAGAACTATGTGGATTTGAACTTGAGCAGACATCTGAATTCAGGAATTACAGATCTTCATCATTGAACATTTCAAGAGAAATAGTGTTTTTTAG</genome_strand>
        <mrna_strand>TAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCCGAATTTTACCACCCAGGGAAGGAATATAATGTTCGTGTGGCTTCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTCAAGGGCCCTGAACTTCTAGTTGACTTGCAAGACTATGACTATTCTTTGGACATGTGGAGCCTTGGCTGCATGTTTGCAGGAATG..........................................................................................................................................................................................ATTTTCCGCAAGGAACCTTTCTTTTATGGCCATGATAATCAGGATCAGCTCGTCAAAATTGCAAAG..............................................................................................................................................................................................GTACTTGGGACAGATGAGTTGAATGCGTACTTGCACAAGTATCAACTAGAGCTTGATCCTCAGCTAGAGGCTATGGTTGGGAG............................................................................................................................................................................................ACACAGTAGGAAGCCGTGGTCCAAATTTATTAATGCAGACAATCAGCATCTAGTGTCACCGGAG.......................................................................................................................................GCTATAGATTATCTTGACAAGCTTCTCCGTTACGATCATCAGACTAGACTTACGGCAAAAGAAGCAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCATCCATATTTCGGGCAAGTGAGGGCTGCTGAAACTAGCAGAATGAGGACACAGTAGCTTTCTTGTCTTGCTGTTAATGGGAAGAAAAAAAACTGTGTAATGTACCTTGTGTATCCATTTAAGTGACATTCGTGAGAACTATGTGGATTTGAACTTGAGCAGACATCTGAATTCAGGAATTACAGATCTTCATCATTGAACATTTCAAGAGAAATAGTGTTTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E546683" ref_strand="+" ref_description="SGN-E546683 [TUS-70-C20](-)">
      <seq>gcggaagcttcgcttgatagattggggtcttgctgaattttcccacccagggaaggaatataatgttcgtgtggcttcaagatacttcaagggccctgaacttctagttgacttgcaagactatgactattctttggacatgtggagccttggctgcatgtttgcaggaatgattttccgcaaggaacctttcttttatggccatgataatcaggatcagctcgtcaaaattgcaaaggtacttgggacagatgagttgaatgcgtacttgcacaagtatcaactagagcttgatcctcagctagaggctatggttgggagacacagtaggaagccatggtccaaatttattaatgcagacaatcagcatctagtgtcaccggaggctatagattatcttgacaagcttctccgatatgatcatcagactagacttacggcaaaagaagcaatggcccatccatatttcgggcaagtgagggctgctgaaactagcaggatgaggacacagtagctttcttgtcttgctgttaatgggaagaaaaaaaaaagtgtaatgtaccttgtgtatccatttaagtgacattcgtgagaactgtgtggatttgaacttgagcagacatctgaattcaggaattacagatcttcatcattgaacatttcaaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="88717" stop="91999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89017" g_stop="89097" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89098" i_stop="89943" i_length="846">
            <donor d_prob="0.568" d_score="0.96"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89944" g_stop="90034" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="172" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90035" i_stop="90220" i_length="186">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90221" g_stop="90286" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="238" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90287" i_stop="90476" i_length="190">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90477" g_stop="90559" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="321" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90560" i_stop="90747" i_length="188">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90748" g_stop="90811" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="385" r_length="64" r_score="0.984"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90812" i_stop="90946" i_length="135">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="90947" g_stop="91015" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="454" r_length="69" r_score="0.971"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="91016" i_stop="91479" i_length="464">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.967" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="91480" g_stop="91702" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="676" r_length="222" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E546683" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E546683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89017" e_stop="89097"/>
          <exon e_start="89944" e_stop="90034"/>
          <exon e_start="90221" e_stop="90286"/>
          <exon e_start="90477" e_stop="90559"/>
          <exon e_start="90748" e_stop="90811"/>
          <exon e_start="90947" e_stop="91015"/>
          <exon e_start="91480" e_stop="91702"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCCGAATTTTACCACCCAGGGAAGGAATATAATGTTCGTGTGGCTTCAAGGTGAGATAATCTGCCGACAGTATGGCTGGACCGGCATAGTTGCTTTGCCAGCAACAACTTCCTACATATAGCATTGCTATTTGTAGATCCATGCTCTACTTGCAAATTATTCTCTGGACAAGTCATGAGTTTTTAATCAGAAAGCAAGTGACATTGTTATATATTTTTTAAGTCAGAAATAATAAAAGGAACATCATTCACTTACATATACAACAACTACCCGTCAGTTCCAAACTAGTCGGGGTCGTTATATGATTTTTGCTGTCCATGTTACTCCATTTAATCCCATATCTTGCGGACTTGTAAAGTTTAGAATCTCTATATTTTCTTAACTGACAAACTTCTGAAAAGCTAAAACACTCCTAGAAAGTATAGGACCTACAGGAAAATTCTAATATATTAATATATTCTCGACTAATATGTAGCATATATATAGAATTTTTTCTTCCATTGTGCCTTTCGTAAGTTCACATGGATCCTTAAAATTATAGGTCCTTAAAGACAACTTCCTTCCATGTGATTTTAGGTCTACTTCGTTTTTTAACAGCTCCACTCACCATAGTTTCACACTCAGGAGTCAGTGCATCAGGAGGGGTTAATGCAAGACATAATCAAATCATCTCAAGGAACAGCTGAGTTCTTAAAGAATACTTAAAACAATACCCATTAAAGAATACTTAAAACAATCAATGGGATTATAGGAAAAGGTTAGGAATTGTTTATGTAAAACTAATTCTGTATCAGCATAGCTGCATATGGGAAATTGGTTTTGTACCGTAAGTTAGTGGTTCATAAACTATCAATGCTATTGAAGCAAGTCTGAGTTCTTCTTTTCTTGCACTTCAGATACTTCAAGGGCCCTGAACTTCTAGTTGACTTGCAAGACTATGACTATTCTTTGGACATGTGGAGCCTTGGCTGCATGTTTGCAGGAATGGTGAGAAATTCTATGATTCATAATATAAGCTGTCAGTTGGTTTATAGTTTTATGCTATCAGTTGTGGGCCTGGGAAACTACAAACATCCGAAAGGACTTGTTAGAAGTTTGTATTTTGCTTATTTGAAATCAATTTTCCTTTTCCTCCTGTTTTCTTTGTGTCTGACCATACCTTTTCCTTGGTAGATTTTCCGCAAGGAACCTTTCTTTTATGGCCATGATAATCAGGATCAGCTCGTCAAAATTGCAAAGGTAATGCGTAGTAACTGACCAGTGACCAATGGGTTTATATACCTTAATTTTGTTGTTTGAGTGAGAGGGGGGAAGTTGATCATCTGAAAACAACCAAAGAAGTTGTTACTTCAGTTGCAAGTGAACACTCAATTTATAGAAGTAAAGCATAACTGCTTGACATGGAGTTGATAGATTATTGTTGTTATAGGTACTTGGGACAGATGAGTTGAATGCGTACTTGCACAAGTATCAACTAGAGCTTGATCCTCAGCTAGAGGCTATGGTTGGGAGGTATGCTTCTTGCTTTATCGCCAAGATAAAACTACGCTAAGGCAATTTGCAAAATAACTTAGAGCTGTGACTAAATAGGGTTACCAAGTTGATCTTAGCAACTAGCTTTAGCAGATGTGTGTCCTCTCTCATTAATTGCCAAAATTCTTAGCTATTGAAGGTGAATACAATCTGTCTTTCCCCTGCAGACACAGTAGGAAGCCGTGGTCCAAATTTATTAATGCAGACAATCAGCATCTAGTGTCACCGGAGGTACTCTTCTCTCTCTATTTATGTATCTATGGTATTTCTGAATAAGACGAAACCAGCAATGGTGACAAGTACATCTCAACCAATTGGCTGTTCTTCACTACCCACTTGATAATTGATTTTGGCTTCTCATTGCAGGCTATAGATTATCTTGACAAGCTTCTCCGTTACGATCATCAGACTAGACTTACGGCAAAAGAAGCAATGGTAATCCTCTTTATCCACTATTAATGAGCTTTAAACTCTGAGCCTCATCATTTTCTTCTCAGCTTCTGTCTTATATTGGTTTACTATTGCTTATTAAAGAAAATGGTTTCGTGACATTTTAAAACACATACTTTACCAAAACCAAAATGTAAGGTTATAAATAAATGAGATCAGTGAGGATGAGTGGGTGAAGAGACGCAACTTGACTAGTTTTTTGTTTTGAAATTCTGTTAGAAACAAGCTGGTGATTGTGAAGTGTCAGTGCTTTCTGTTTCTGCTCTTGGCTATGTTTTTTTCCTTTGTCATGATGTTGCATCTGCATCTTTCCTGGAATCAATCCACTCTCCCTTCTCAATTATTTCTTTTAACAACACTATACATGTATTTGTTTTGTTTTGCACAACTAGAGTATTGAACAGTGTGTTGGGAAACCTACTAACTGCTTTCTCTGCCCTGTTTCTTAGGCCCATCCATATTTCGGGCAAGTGAGGGCTGCTGAAACTAGCAGAATGAGGACACAGTAGCTTTCTTGTCTTGCTGTTAATGGGAAGAAAAAAAACTGTGTAATGTACCTTGTGTATCCATTTAAGTGACATTCGTGAGAACTATGTGGATTTGAACTTGAGCAGACATCTGAATTCAGGAATTACAGATCTTCATCATTGAACATTTCAAGAGAAATAGTGT</genome_strand>
        <mrna_strand>GCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCTGAATTTTCCCACCCAGGGAAGGAATATAATGTTCGTGTGGCTTCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTCAAGGGCCCTGAACTTCTAGTTGACTTGCAAGACTATGACTATTCTTTGGACATGTGGAGCCTTGGCTGCATGTTTGCAGGAATG..........................................................................................................................................................................................ATTTTCCGCAAGGAACCTTTCTTTTATGGCCATGATAATCAGGATCAGCTCGTCAAAATTGCAAAG..............................................................................................................................................................................................GTACTTGGGACAGATGAGTTGAATGCGTACTTGCACAAGTATCAACTAGAGCTTGATCCTCAGCTAGAGGCTATGGTTGGGAG............................................................................................................................................................................................ACACAGTAGGAAGCCATGGTCCAAATTTATTAATGCAGACAATCAGCATCTAGTGTCACCGGAG.......................................................................................................................................GCTATAGATTATCTTGACAAGCTTCTCCGATATGATCATCAGACTAGACTTACGGCAAAAGAAGCAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCATCCATATTTCGGGCAAGTGAGGGCTGCTGAAACTAGCAGGATGAGGACACAGTAGCTTTCTTGTCTTGCTGTTAATGGGAAGAAAAAAAAAAGTGTAATGTACCTTGTGTATCCATTTAAGTGACATTCGTGAGAACTGTGTGGATTTGAACTTGAGCAGACATCTGAATTCAGGAATTACAGATCTTCATCATTGAACATTTCAA-AAAAAAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E255943" ref_strand="-" ref_description="SGN-E255943 [cLEG-35-I15]">
      <seq>gcatgtttgcaggaatgattttccgcaaggaacctttcttttatggccatgataatcaggatcagctcgtcaaaattgcaaaggtacttgggacagatgagttgaatgcgtacttgcacaagtatcaactagagcttgatcctcagctagaggctatggttgggagacacagtaggaagccgtggtccaaatttattaatgcagacaatcagcatctagtgtcaccggaggctatagattatcttgacaagcttctccgttacgatcatcagactagacttacggcaaaagaagcaatggcccatccatatttcgggcaagtgagggctgctgaaactagcagaatgaggacacagtagctttcttgtcttgctgttaatgggaagaaaaaaaactgtgtaatgtaccttgtgtatccatttaagtgacattcgtgagaactatgtggatttgaacttgagcagacatctgaattcaggaattacagatcttcatcattgaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="89916" stop="91984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90018" g_stop="90034" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90035" i_stop="90220" i_length="186">
            <donor d_prob="0.930" d_score="0.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90221" g_stop="90286" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="83" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90287" i_stop="90476" i_length="190">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90477" g_stop="90559" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="166" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90560" i_stop="90747" i_length="188">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90748" g_stop="90811" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="230" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90812" i_stop="90946" i_length="135">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90947" g_stop="91015" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="299" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="91016" i_stop="91479" i_length="464">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="91480" g_stop="91687" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="507" r_length="208" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E255943" ref_strand="-">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255943" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="90018" e_stop="90034"/>
          <exon e_start="90221" e_stop="90286"/>
          <exon e_start="90477" e_stop="90559"/>
          <exon e_start="90748" e_stop="90811"/>
          <exon e_start="90947" e_stop="91015"/>
          <exon e_start="91480" e_stop="91687"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATGTTTGCAGGAATGGTGAGAAATTCTATGATTCATAATATAAGCTGTCAGTTGGTTTATAGTTTTATGCTATCAGTTGTGGGCCTGGGAAACTACAAACATCCGAAAGGACTTGTTAGAAGTTTGTATTTTGCTTATTTGAAATCAATTTTCCTTTTCCTCCTGTTTTCTTTGTGTCTGACCATACCTTTTCCTTGGTAGATTTTCCGCAAGGAACCTTTCTTTTATGGCCATGATAATCAGGATCAGCTCGTCAAAATTGCAAAGGTAATGCGTAGTAACTGACCAGTGACCAATGGGTTTATATACCTTAATTTTGTTGTTTGAGTGAGAGGGGGGAAGTTGATCATCTGAAAACAACCAAAGAAGTTGTTACTTCAGTTGCAAGTGAACACTCAATTTATAGAAGTAAAGCATAACTGCTTGACATGGAGTTGATAGATTATTGTTGTTATAGGTACTTGGGACAGATGAGTTGAATGCGTACTTGCACAAGTATCAACTAGAGCTTGATCCTCAGCTAGAGGCTATGGTTGGGAGGTATGCTTCTTGCTTTATCGCCAAGATAAAACTACGCTAAGGCAATTTGCAAAATAACTTAGAGCTGTGACTAAATAGGGTTACCAAGTTGATCTTAGCAACTAGCTTTAGCAGATGTGTGTCCTCTCTCATTAATTGCCAAAATTCTTAGCTATTGAAGGTGAATACAATCTGTCTTTCCCCTGCAGACACAGTAGGAAGCCGTGGTCCAAATTTATTAATGCAGACAATCAGCATCTAGTGTCACCGGAGGTACTCTTCTCTCTCTATTTATGTATCTATGGTATTTCTGAATAAGACGAAACCAGCAATGGTGACAAGTACATCTCAACCAATTGGCTGTTCTTCACTACCCACTTGATAATTGATTTTGGCTTCTCATTGCAGGCTATAGATTATCTTGACAAGCTTCTCCGTTACGATCATCAGACTAGACTTACGGCAAAAGAAGCAATGGTAATCCTCTTTATCCACTATTAATGAGCTTTAAACTCTGAGCCTCATCATTTTCTTCTCAGCTTCTGTCTTATATTGGTTTACTATTGCTTATTAAAGAAAATGGTTTCGTGACATTTTAAAACACATACTTTACCAAAACCAAAATGTAAGGTTATAAATAAATGAGATCAGTGAGGATGAGTGGGTGAAGAGACGCAACTTGACTAGTTTTTTGTTTTGAAATTCTGTTAGAAACAAGCTGGTGATTGTGAAGTGTCAGTGCTTTCTGTTTCTGCTCTTGGCTATGTTTTTTTCCTTTGTCATGATGTTGCATCTGCATCTTTCCTGGAATCAATCCACTCTCCCTTCTCAATTATTTCTTTTAACAACACTATACATGTATTTGTTTTGTTTTGCACAACTAGAGTATTGAACAGTGTGTTGGGAAACCTACTAACTGCTTTCTCTGCCCTGTTTCTTAGGCCCATCCATATTTCGGGCAAGTGAGGGCTGCTGAAACTAGCAGAATGAGGACACAGTAGCTTTCTTGTCTTGCTGTTAATGGGAAGAAAAAAAACTGTGTAATGTACCTTGTGTATCCATTTAAGTGACATTCGTGAGAACTATGTGGATTTGAACTTGAGCAGACATCTGAATTCAGGAATTACAGATCTTCATCATTGAACATTT</genome_strand>
        <mrna_strand>GCATGTTTGCAGGAATG..........................................................................................................................................................................................ATTTTCCGCAAGGAACCTTTCTTTTATGGCCATGATAATCAGGATCAGCTCGTCAAAATTGCAAAG..............................................................................................................................................................................................GTACTTGGGACAGATGAGTTGAATGCGTACTTGCACAAGTATCAACTAGAGCTTGATCCTCAGCTAGAGGCTATGGTTGGGAG............................................................................................................................................................................................ACACAGTAGGAAGCCGTGGTCCAAATTTATTAATGCAGACAATCAGCATCTAGTGTCACCGGAG.......................................................................................................................................GCTATAGATTATCTTGACAAGCTTCTCCGTTACGATCATCAGACTAGACTTACGGCAAAAGAAGCAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCATCCATATTTCGGGCAAGTGAGGGCTGCTGAAACTAGCAGAATGAGGACACAGTAGCTTTCTTGTCTTGCTGTTAATGGGAAGAAAAAAAACTGTGTAATGTACCTTGTGTATCCATTTAAGTGACATTCGTGAGAACTATGTGGATTTGAACTTGAGCAGACATCTGAATTCAGGAATTACAGATCTTCATCATTGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E215766" ref_strand="+" ref_description="SGN-E215766 [cLEL-15-C16](-)">
      <seq>acttgcacaagtatcaactagagcttgatcctcagctagaggctatggttgggagacacagtaggaagccgtggtccaaatttattaatgcagacaatcagcatctagtgtcaccggaggctatagattatcttgacaagcttctccgttacgatcatcagactagacttacggcaaaagaagcaatggcccatccatatttcgggcaagtgagggctgctgaaactagcagaatgaggacacagtagctttcttgtcttgctgttaatgggaagaaaaaaaactgtgtaatgtaccttgtgtatccatttaagtgacattcgtgagaactatgtggatttgaacttgagcagacatctgaattcaggaattacagatcttcatcattgagcatttcaagagaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="90205" stop="91998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90505" g_stop="90559" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90560" i_stop="90747" i_length="188">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90748" g_stop="90811" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="119" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90812" i_stop="90946" i_length="135">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90947" g_stop="91015" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="188" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91016" i_stop="91479" i_length="464">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91480" g_stop="91698" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="407" r_length="219" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="408" polyA_stop="430"/>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E215766" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E215766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90505" e_stop="90559"/>
          <exon e_start="90748" e_stop="90811"/>
          <exon e_start="90947" e_stop="91015"/>
          <exon e_start="91480" e_stop="91698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTGCACAAGTATCAACTAGAGCTTGATCCTCAGCTAGAGGCTATGGTTGGGAGGTATGCTTCTTGCTTTATCGCCAAGATAAAACTACGCTAAGGCAATTTGCAAAATAACTTAGAGCTGTGACTAAATAGGGTTACCAAGTTGATCTTAGCAACTAGCTTTAGCAGATGTGTGTCCTCTCTCATTAATTGCCAAAATTCTTAGCTATTGAAGGTGAATACAATCTGTCTTTCCCCTGCAGACACAGTAGGAAGCCGTGGTCCAAATTTATTAATGCAGACAATCAGCATCTAGTGTCACCGGAGGTACTCTTCTCTCTCTATTTATGTATCTATGGTATTTCTGAATAAGACGAAACCAGCAATGGTGACAAGTACATCTCAACCAATTGGCTGTTCTTCACTACCCACTTGATAATTGATTTTGGCTTCTCATTGCAGGCTATAGATTATCTTGACAAGCTTCTCCGTTACGATCATCAGACTAGACTTACGGCAAAAGAAGCAATGGTAATCCTCTTTATCCACTATTAATGAGCTTTAAACTCTGAGCCTCATCATTTTCTTCTCAGCTTCTGTCTTATATTGGTTTACTATTGCTTATTAAAGAAAATGGTTTCGTGACATTTTAAAACACATACTTTACCAAAACCAAAATGTAAGGTTATAAATAAATGAGATCAGTGAGGATGAGTGGGTGAAGAGACGCAACTTGACTAGTTTTTTGTTTTGAAATTCTGTTAGAAACAAGCTGGTGATTGTGAAGTGTCAGTGCTTTCTGTTTCTGCTCTTGGCTATGTTTTTTTCCTTTGTCATGATGTTGCATCTGCATCTTTCCTGGAATCAATCCACTCTCCCTTCTCAATTATTTCTTTTAACAACACTATACATGTATTTGTTTTGTTTTGCACAACTAGAGTATTGAACAGTGTGTTGGGAAACCTACTAACTGCTTTCTCTGCCCTGTTTCTTAGGCCCATCCATATTTCGGGCAAGTGAGGGCTGCTGAAACTAGCAGAATGAGGACACAGTAGCTTTCTTGTCTTGCTGTTAATGGGAAGAAAAAAAACTGTGTAATGTACCTTGTGTATCCATTTAAGTGACATTCGTGAGAACTATGTGGATTTGAACTTGAGCAGACATCTGAATTCAGGAATTACAGATCTTCATCATTGAACATTTCAAGAGAAATA</genome_strand>
        <mrna_strand>ACTTGCACAAGTATCAACTAGAGCTTGATCCTCAGCTAGAGGCTATGGTTGGGAG............................................................................................................................................................................................ACACAGTAGGAAGCCGTGGTCCAAATTTATTAATGCAGACAATCAGCATCTAGTGTCACCGGAG.......................................................................................................................................GCTATAGATTATCTTGACAAGCTTCTCCGTTACGATCATCAGACTAGACTTACGGCAAAAGAAGCAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCATCCATATTTCGGGCAAGTGAGGGCTGCTGAAACTAGCAGAATGAGGACACAGTAGCTTTCTTGTCTTGCTGTTAATGGGAAGAAAAAAAACTGTGTAATGTACCTTGTGTATCCATTTAAGTGACATTCGTGAGAACTATGTGGATTTGAACTTGAGCAGACATCTGAATTCAGGAATTACAGATCTTCATCATTGAGCATTTCAAGAGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E215366" ref_strand="+" ref_description="SGN-E215366 [cLEL-20-A23](-)">
      <seq>tcagcatctagtgtcaccgaaggctatagattatcttgacaagcttctccgttacgatcatcagactagacttacggcaaaagaagcaatggcccatccatatttcgggcaagtgagggctgctgaaactagcagaatgaggacacagtagctttcttgtcttgctgttaatgggaagaaaaaaaactgtgtaatgtaccttgtgtatccatttaagtgacattcgtgagaactatgtggatttgaacttgagcagacatctgaattcaggaattacagatcttcatcattgaacatttcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="90490" stop="91998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90790" g_stop="90811" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90812" i_stop="90946" i_length="135">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90947" g_stop="91015" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="91" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91016" i_stop="91479" i_length="464">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91480" g_stop="91698" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="310" r_length="219" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91699" i_stop="91928" i_length="230">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.625" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91929" g_stop="91937" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="319" r_length="9" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E215366" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>319</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E215366" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90790" e_stop="90811"/>
          <exon e_start="90947" e_stop="91015"/>
          <exon e_start="91480" e_stop="91698"/>
          <exon e_start="91929" e_stop="91937"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCATCTAGTGTCACCGGAGGTACTCTTCTCTCTCTATTTATGTATCTATGGTATTTCTGAATAAGACGAAACCAGCAATGGTGACAAGTACATCTCAACCAATTGGCTGTTCTTCACTACCCACTTGATAATTGATTTTGGCTTCTCATTGCAGGCTATAGATTATCTTGACAAGCTTCTCCGTTACGATCATCAGACTAGACTTACGGCAAAAGAAGCAATGGTAATCCTCTTTATCCACTATTAATGAGCTTTAAACTCTGAGCCTCATCATTTTCTTCTCAGCTTCTGTCTTATATTGGTTTACTATTGCTTATTAAAGAAAATGGTTTCGTGACATTTTAAAACACATACTTTACCAAAACCAAAATGTAAGGTTATAAATAAATGAGATCAGTGAGGATGAGTGGGTGAAGAGACGCAACTTGACTAGTTTTTTGTTTTGAAATTCTGTTAGAAACAAGCTGGTGATTGTGAAGTGTCAGTGCTTTCTGTTTCTGCTCTTGGCTATGTTTTTTTCCTTTGTCATGATGTTGCATCTGCATCTTTCCTGGAATCAATCCACTCTCCCTTCTCAATTATTTCTTTTAACAACACTATACATGTATTTGTTTTGTTTTGCACAACTAGAGTATTGAACAGTGTGTTGGGAAACCTACTAACTGCTTTCTCTGCCCTGTTTCTTAGGCCCATCCATATTTCGGGCAAGTGAGGGCTGCTGAAACTAGCAGAATGAGGACACAGTAGCTTTCTTGTCTTGCTGTTAATGGGAAGAAAAAAAACTGTGTAATGTACCTTGTGTATCCATTTAAGTGACATTCGTGAGAACTATGTGGATTTGAACTTGAGCAGACATCTGAATTCAGGAATTACAGATCTTCATCATTGAACATTTCAAGAGAAATAGTGTTTTTTAGATTTCCTGATCGTGACCTTGATTGCAAATGGAAGTGACTTGCTGGGCGTCAAAAGTCACCCCACCCCCCCTTCCCCAAAGATACTATCTCCCTAGATGTGAACAAAAGCAGATTTTTGAAAATTAGTTCACTTTGTATATTAGTGCACTGGATTTTTCTGCATTCAGCTTTGGTGGTTTGTCTTTTGTGTAAGTTCATTGATATGGTGTAGGGCTATAGAAGAATGAA</genome_strand>
        <mrna_strand>TCAGCATCTAGTGTCACCGAAG.......................................................................................................................................GCTATAGATTATCTTGACAAGCTTCTCCGTTACGATCATCAGACTAGACTTACGGCAAAAGAAGCAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCATCCATATTTCGGGCAAGTGAGGGCTGCTGAAACTAGCAGAATGAGGACACAGTAGCTTTCTTGTCTTGCTGTTAATGGGAAGAAAAAAAACTGTGTAATGTACCTTGTGTATCCATTTAAGTGACATTCGTGAGAACTATGTGGATTTGAACTTGAGCAGACATCTGAATTCAGGAATTACAGATCTTCATCATTGAACATTTCAAAAAAAAAA......................................................................................................................................................................................................................................AAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E551253" ref_strand="+" ref_description="SGN-E551253 [TUS-11-B21]">
      <seq>cagcatctagtgtcaccggaggctatagattatcttgacaagcttctccgttacgatcatcagactagacttacggcaaaagaagcaatggcccatccatatttcgggcaagtgagggctgctgaaactagcagaatgaggacacagtagctttcttgtcttgctgttaatgggaagaaaaaaaactgtgtaatgtaccttgtgtatccatttaagtgacattcgtgagaactatgtggatttgaacttgagcagacatctgaattcaggaattacagatcttcatcattgaacatttcaagagaaatagtgttttttagatttcctgatcgtgaccttgattgcaaatggaagtgacttgctgggcgtcaaaagtcaccccacccccccttccccaaagatactatctccctagatgtgaacaaaagcagatttttgaaaattagttcactttgtatattagtgcactggatttttctgcattcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="90491" stop="92175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90791" g_stop="90811" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90812" i_stop="90946" i_length="135">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90947" g_stop="91015" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="90" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91016" i_stop="91479" i_length="464">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91480" g_stop="91875" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="486" r_length="396" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91876" i_stop="91928" i_length="53">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.625" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91929" g_stop="91937" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="495" r_length="9" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E551253" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90791" e_stop="90811"/>
          <exon e_start="90947" e_stop="91015"/>
          <exon e_start="91480" e_stop="91875"/>
          <exon e_start="91929" e_stop="91937"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCATCTAGTGTCACCGGAGGTACTCTTCTCTCTCTATTTATGTATCTATGGTATTTCTGAATAAGACGAAACCAGCAATGGTGACAAGTACATCTCAACCAATTGGCTGTTCTTCACTACCCACTTGATAATTGATTTTGGCTTCTCATTGCAGGCTATAGATTATCTTGACAAGCTTCTCCGTTACGATCATCAGACTAGACTTACGGCAAAAGAAGCAATGGTAATCCTCTTTATCCACTATTAATGAGCTTTAAACTCTGAGCCTCATCATTTTCTTCTCAGCTTCTGTCTTATATTGGTTTACTATTGCTTATTAAAGAAAATGGTTTCGTGACATTTTAAAACACATACTTTACCAAAACCAAAATGTAAGGTTATAAATAAATGAGATCAGTGAGGATGAGTGGGTGAAGAGACGCAACTTGACTAGTTTTTTGTTTTGAAATTCTGTTAGAAACAAGCTGGTGATTGTGAAGTGTCAGTGCTTTCTGTTTCTGCTCTTGGCTATGTTTTTTTCCTTTGTCATGATGTTGCATCTGCATCTTTCCTGGAATCAATCCACTCTCCCTTCTCAATTATTTCTTTTAACAACACTATACATGTATTTGTTTTGTTTTGCACAACTAGAGTATTGAACAGTGTGTTGGGAAACCTACTAACTGCTTTCTCTGCCCTGTTTCTTAGGCCCATCCATATTTCGGGCAAGTGAGGGCTGCTGAAACTAGCAGAATGAGGACACAGTAGCTTTCTTGTCTTGCTGTTAATGGGAAGAAAAAAAACTGTGTAATGTACCTTGTGTATCCATTTAAGTGACATTCGTGAGAACTATGTGGATTTGAACTTGAGCAGACATCTGAATTCAGGAATTACAGATCTTCATCATTGAACATTTCAAGAGAAATAGTGTTTTTTAGATTTCCTGATCGTGACCTTGATTGCAAATGGAAGTGACTTGCTGGGCGTCAAAAGTCACCCCACCCCCCCTTCCCCAAAGATACTATCTCCCTAGATGTGAACAAAAGCAGATTTTTGAAAATTAGTTCACTTTGTATATTAGTGCACTGGATTTTTCTGCATTCAGCTTTGGTGGTTTGTCTTTTGTGTAAGTTCATTGATATGGTGTAGGGCTATAGAAGAATGAA</genome_strand>
        <mrna_strand>CAGCATCTAGTGTCACCGGAG.......................................................................................................................................GCTATAGATTATCTTGACAAGCTTCTCCGTTACGATCATCAGACTAGACTTACGGCAAAAGAAGCAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCATCCATATTTCGGGCAAGTGAGGGCTGCTGAAACTAGCAGAATGAGGACACAGTAGCTTTCTTGTCTTGCTGTTAATGGGAAGAAAAAAAACTGTGTAATGTACCTTGTGTATCCATTTAAGTGACATTCGTGAGAACTATGTGGATTTGAACTTGAGCAGACATCTGAATTCAGGAATTACAGATCTTCATCATTGAACATTTCAAGAGAAATAGTGTTTTTTAGATTTCCTGATCGTGACCTTGATTGCAAATGGAAGTGACTTGCTGGGCGTCAAAAGTCACCCCACCCCCCCTTCCCCAAAGATACTATCTCCCTAGATGTGAACAAAAGCAGATTTTTGAAAATTAGTTCACTTTGTATATTAGTGCACTGGATTTTTCTGCATTCA.....................................................AAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E688193" ref_strand="+" ref_description="SGN-E688193 [t3_tus_11_b21]">
      <seq>cagcatctagtgtcaccggaggctatagattatcttgacaagcttctccgttacgatcatcagactagacttacggcaaaagaagcaatggcccatccatatttcgggcaagtgagggctgctgaaactagcagaatgaggacacagtagctttcttgtcttgctgttaatgggaagaaaaaaaactgtgtaatgtaccttgtgtatccatttaagtgacattcgtgagaactatgtggatttgaacttgagcagacatctgaattcaggaattacagatcttcatcattgaacatttcaagagaaatagtgttttttagatttcctgatcgtgaccttgattgcaaatggaagtgacttgctgggcgtcaaaagtcaccccacccccccttccccaaagatactatctccctagatgtgaacaaaagcagatttttgaaaattagttcactttgtatattagtgcactggatttttctgcattcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="90491" stop="92175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90791" g_stop="90811" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90812" i_stop="90946" i_length="135">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90947" g_stop="91015" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="90" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91016" i_stop="91479" i_length="464">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91480" g_stop="91875" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="486" r_length="396" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91876" i_stop="91928" i_length="53">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.625" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91929" g_stop="91937" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="495" r_length="9" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E688193" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688193" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90791" e_stop="90811"/>
          <exon e_start="90947" e_stop="91015"/>
          <exon e_start="91480" e_stop="91875"/>
          <exon e_start="91929" e_stop="91937"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCATCTAGTGTCACCGGAGGTACTCTTCTCTCTCTATTTATGTATCTATGGTATTTCTGAATAAGACGAAACCAGCAATGGTGACAAGTACATCTCAACCAATTGGCTGTTCTTCACTACCCACTTGATAATTGATTTTGGCTTCTCATTGCAGGCTATAGATTATCTTGACAAGCTTCTCCGTTACGATCATCAGACTAGACTTACGGCAAAAGAAGCAATGGTAATCCTCTTTATCCACTATTAATGAGCTTTAAACTCTGAGCCTCATCATTTTCTTCTCAGCTTCTGTCTTATATTGGTTTACTATTGCTTATTAAAGAAAATGGTTTCGTGACATTTTAAAACACATACTTTACCAAAACCAAAATGTAAGGTTATAAATAAATGAGATCAGTGAGGATGAGTGGGTGAAGAGACGCAACTTGACTAGTTTTTTGTTTTGAAATTCTGTTAGAAACAAGCTGGTGATTGTGAAGTGTCAGTGCTTTCTGTTTCTGCTCTTGGCTATGTTTTTTTCCTTTGTCATGATGTTGCATCTGCATCTTTCCTGGAATCAATCCACTCTCCCTTCTCAATTATTTCTTTTAACAACACTATACATGTATTTGTTTTGTTTTGCACAACTAGAGTATTGAACAGTGTGTTGGGAAACCTACTAACTGCTTTCTCTGCCCTGTTTCTTAGGCCCATCCATATTTCGGGCAAGTGAGGGCTGCTGAAACTAGCAGAATGAGGACACAGTAGCTTTCTTGTCTTGCTGTTAATGGGAAGAAAAAAAACTGTGTAATGTACCTTGTGTATCCATTTAAGTGACATTCGTGAGAACTATGTGGATTTGAACTTGAGCAGACATCTGAATTCAGGAATTACAGATCTTCATCATTGAACATTTCAAGAGAAATAGTGTTTTTTAGATTTCCTGATCGTGACCTTGATTGCAAATGGAAGTGACTTGCTGGGCGTCAAAAGTCACCCCACCCCCCCTTCCCCAAAGATACTATCTCCCTAGATGTGAACAAAAGCAGATTTTTGAAAATTAGTTCACTTTGTATATTAGTGCACTGGATTTTTCTGCATTCAGCTTTGGTGGTTTGTCTTTTGTGTAAGTTCATTGATATGGTGTAGGGCTATAGAAGAATGAA</genome_strand>
        <mrna_strand>CAGCATCTAGTGTCACCGGAG.......................................................................................................................................GCTATAGATTATCTTGACAAGCTTCTCCGTTACGATCATCAGACTAGACTTACGGCAAAAGAAGCAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCATCCATATTTCGGGCAAGTGAGGGCTGCTGAAACTAGCAGAATGAGGACACAGTAGCTTTCTTGTCTTGCTGTTAATGGGAAGAAAAAAAACTGTGTAATGTACCTTGTGTATCCATTTAAGTGACATTCGTGAGAACTATGTGGATTTGAACTTGAGCAGACATCTGAATTCAGGAATTACAGATCTTCATCATTGAACATTTCAAGAGAAATAGTGTTTTTTAGATTTCCTGATCGTGACCTTGATTGCAAATGGAAGTGACTTGCTGGGCGTCAAAAGTCACCCCACCCCCCCTTCCCCAAAGATACTATCTCCCTAGATGTGAACAAAAGCAGATTTTTGAAAATTAGTTCACTTTGTATATTAGTGCACTGGATTTTTCTGCATTCA.....................................................AAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E420270" ref_strand="+" ref_description="SGN-E420270 [STM-30-P24]">
      <seq>cagcatctagtgtcaccagaggctatagattatcttgacaagcttcttcgttatgatcatcagactagacttacggcaaaagaagcaatggcccatccatatttcgggcaagtgagggctgctgaaactagcaggatgaggacacagtagctttcttgtcttgctgttaatgggaagaaaaaaaactatggtgtaatgtaccttgtgtatccatttaagtgacattcgtgagaactatgtggatttgaacttgagcagacatctgaattcaggaattacagatcctcatcattgaacatttcaagagaaatagtgttctgtagatttcctgctcgggaccttgattgcaaatggaagtgacttgttgggcgtcnnannnaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="90491" stop="92059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90791" g_stop="90811" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90812" i_stop="90946" i_length="135">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90947" g_stop="91015" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="90" r_length="69" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91016" i_stop="91479" i_length="464">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.967" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91480" g_stop="91763" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="377" r_length="287" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="380" polyA_stop="400"/>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E420270" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E420270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90791" e_stop="90811"/>
          <exon e_start="90947" e_stop="91015"/>
          <exon e_start="91480" e_stop="91763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCATCTAGTGTCACCGGAGGTACTCTTCTCTCTCTATTTATGTATCTATGGTATTTCTGAATAAGACGAAACCAGCAATGGTGACAAGTACATCTCAACCAATTGGCTGTTCTTCACTACCCACTTGATAATTGATTTTGGCTTCTCATTGCAGGCTATAGATTATCTTGACAAGCTTCTCCGTTACGATCATCAGACTAGACTTACGGCAAAAGAAGCAATGGTAATCCTCTTTATCCACTATTAATGAGCTTTAAACTCTGAGCCTCATCATTTTCTTCTCAGCTTCTGTCTTATATTGGTTTACTATTGCTTATTAAAGAAAATGGTTTCGTGACATTTTAAAACACATACTTTACCAAAACCAAAATGTAAGGTTATAAATAAATGAGATCAGTGAGGATGAGTGGGTGAAGAGACGCAACTTGACTAGTTTTTTGTTTTGAAATTCTGTTAGAAACAAGCTGGTGATTGTGAAGTGTCAGTGCTTTCTGTTTCTGCTCTTGGCTATGTTTTTTTCCTTTGTCATGATGTTGCATCTGCATCTTTCCTGGAATCAATCCACTCTCCCTTCTCAATTATTTCTTTTAACAACACTATACATGTATTTGTTTTGTTTTGCACAACTAGAGTATTGAACAGTGTGTTGGGAAACCTACTAACTGCTTTCTCTGCCCTGTTTCTTAGGCCCATCCATATTTCGGGCAAGTGAGGGCTGCTGAAACTAGCAGAATGAGGACACAGTAGCTTTCTTGTCTTGCTGTTAATGGGAAGAAAAAAAAC--T-GTGTAATGTACCTTGTGTATCCATTTAAGTGACATTCGTGAGAACTATGTGGATTTGAACTTGAGCAGACATCTGAATTCAGGAATTACAGATCTTCATCATTGAACATTTCAAGAGAAATAGTGTTTTTTAGATTTCCTGATCGTGACCTTGATTGCAAATGGAAGTGACTTGCTGGGCGTCAAAA</genome_strand>
        <mrna_strand>CAGCATCTAGTGTCACCAGAG.......................................................................................................................................GCTATAGATTATCTTGACAAGCTTCTTCGTTATGATCATCAGACTAGACTTACGGCAAAAGAAGCAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCATCCATATTTCGGGCAAGTGAGGGCTGCTGAAACTAGCAGGATGAGGACACAGTAGCTTTCTTGTCTTGCTGTTAATGGGAAGAAAAAAAACTATGGTGTAATGTACCTTGTGTATCCATTTAAGTGACATTCGTGAGAACTATGTGGATTTGAACTTGAGCAGACATCTGAATTCAGGAATTACAGATCCTCATCATTGAACATTTCAAGAGAAATAGTGTTCTGTAGATTTCCTGCTCGGGACCTTGATTGCAAATGGAAGTGACTTGTTGGGCGTCNNAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E420271" ref_strand="-" ref_description="SGN-E420271 [STM-30-P24]">
      <seq>cagcatttagtgtcaccagaggctatagattatcttgacaagcttcttcgttatgatcatcagactagacttacggcaaaagaagcaatggcccatccatatttcgggcaagtgagggctgctgaaactagcaggatgaggacacagtagctttcttgtcttgctgttaatgggaagaaaaaaaactatggtgtaatgtaccttgtgtatccatttaagtgacattcgtgagaactatgtggatttgaacttgagcagacatctgaattcaggaattacagatcctcatcattgaacatttcaagagaaatagtgttctgtagatttcctgctcgggaccttgattgcaaatggaagtgacttgttgggagtcaaaaaaaaaaaaaaaaaaaaaaaaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="90645" stop="92063"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90791" g_stop="90811" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="0.905"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90812" i_stop="90946" i_length="135">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90947" g_stop="91015" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="90" r_length="69" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91016" i_stop="91479" i_length="464">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.967" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91480" g_stop="91763" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="377" r_length="287" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="378" polyA_stop="399"/>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E420271" ref_strand="-">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E420271" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="90791" e_stop="90811"/>
          <exon e_start="90947" e_stop="91015"/>
          <exon e_start="91480" e_stop="91763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCATCTAGTGTCACCGGAGGTACTCTTCTCTCTCTATTTATGTATCTATGGTATTTCTGAATAAGACGAAACCAGCAATGGTGACAAGTACATCTCAACCAATTGGCTGTTCTTCACTACCCACTTGATAATTGATTTTGGCTTCTCATTGCAGGCTATAGATTATCTTGACAAGCTTCTCCGTTACGATCATCAGACTAGACTTACGGCAAAAGAAGCAATGGTAATCCTCTTTATCCACTATTAATGAGCTTTAAACTCTGAGCCTCATCATTTTCTTCTCAGCTTCTGTCTTATATTGGTTTACTATTGCTTATTAAAGAAAATGGTTTCGTGACATTTTAAAACACATACTTTACCAAAACCAAAATGTAAGGTTATAAATAAATGAGATCAGTGAGGATGAGTGGGTGAAGAGACGCAACTTGACTAGTTTTTTGTTTTGAAATTCTGTTAGAAACAAGCTGGTGATTGTGAAGTGTCAGTGCTTTCTGTTTCTGCTCTTGGCTATGTTTTTTTCCTTTGTCATGATGTTGCATCTGCATCTTTCCTGGAATCAATCCACTCTCCCTTCTCAATTATTTCTTTTAACAACACTATACATGTATTTGTTTTGTTTTGCACAACTAGAGTATTGAACAGTGTGTTGGGAAACCTACTAACTGCTTTCTCTGCCCTGTTTCTTAGGCCCATCCATATTTCGGGCAAGTGAGGGCTGCTGAAACTAGCAGAATGAGGACACAGTAGCTTTCTTGTCTTGCTGTTAATGGGAAGAAAAAAAAC--T-GTGTAATGTACCTTGTGTATCCATTTAAGTGACATTCGTGAGAACTATGTGGATTTGAACTTGAGCAGACATCTGAATTCAGGAATTACAGATCTTCATCATTGAACATTTCAAGAGAAATAGTGTTTTTTAGATTTCCTGATCGTGACCTTGATTGCAAATGGAAGTGACTTGCTGGGCGTCAAAA</genome_strand>
        <mrna_strand>CAGCATTTAGTGTCACCAGAG.......................................................................................................................................GCTATAGATTATCTTGACAAGCTTCTTCGTTATGATCATCAGACTAGACTTACGGCAAAAGAAGCAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCATCCATATTTCGGGCAAGTGAGGGCTGCTGAAACTAGCAGGATGAGGACACAGTAGCTTTCTTGTCTTGCTGTTAATGGGAAGAAAAAAAACTATGGTGTAATGTACCTTGTGTATCCATTTAAGTGACATTCGTGAGAACTATGTGGATTTGAACTTGAGCAGACATCTGAATTCAGGAATTACAGATCCTCATCATTGAACATTTCAAGAGAAATAGTGTTCTGTAGATTTCCTGCTCGGGACCTTGATTGCAAATGGAAGTGACTTGTTGGGAGTCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E405996" ref_strand="+" ref_description="SGN-E405996 [PPI-2-G16]">
      <seq>cagcatctagtgtcaccagagtgctatagattatcttgacaagcttcttcgttatgatcatcagactagacttacggcaaaagaagcaatggcccatccatatttcgggcaagtgagggctgctgaaactagcaggatgaggacacagtagctttcttgtcttgctgttaatgggaagaaaaaaaactatggtgtaatgtaccttgtgtatccatttaagtgacattcgtgagaactatgtggatttgaacttgagcagacatctgaattcaggaattacagatcctcatcattgaacatttcaagagaaatagtgttctgtagatttcctgctcgggaccttgattgcaaatggaagtgacttgttgggcgtcaaaaaaaaaaaaaaaaaaaaaaaaana</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="90491" stop="92063"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90791" g_stop="90811" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="0.857"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90812" i_stop="90946" i_length="135">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90947" g_stop="91015" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="91" r_length="69" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91016" i_stop="91479" i_length="464">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.967" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91480" g_stop="91763" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="378" r_length="287" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="379" polyA_stop="401"/>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E405996" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E405996" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90791" e_stop="90811"/>
          <exon e_start="90947" e_stop="91015"/>
          <exon e_start="91480" e_stop="91763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCATCTAGTGTCACCGGAG-GTACTCTTCTCTCTCTATTTATGTATCTATGGTATTTCTGAATAAGACGAAACCAGCAATGGTGACAAGTACATCTCAACCAATTGGCTGTTCTTCACTACCCACTTGATAATTGATTTTGGCTTCTCATTGCAGGCTATAGATTATCTTGACAAGCTTCTCCGTTACGATCATCAGACTAGACTTACGGCAAAAGAAGCAATGGTAATCCTCTTTATCCACTATTAATGAGCTTTAAACTCTGAGCCTCATCATTTTCTTCTCAGCTTCTGTCTTATATTGGTTTACTATTGCTTATTAAAGAAAATGGTTTCGTGACATTTTAAAACACATACTTTACCAAAACCAAAATGTAAGGTTATAAATAAATGAGATCAGTGAGGATGAGTGGGTGAAGAGACGCAACTTGACTAGTTTTTTGTTTTGAAATTCTGTTAGAAACAAGCTGGTGATTGTGAAGTGTCAGTGCTTTCTGTTTCTGCTCTTGGCTATGTTTTTTTCCTTTGTCATGATGTTGCATCTGCATCTTTCCTGGAATCAATCCACTCTCCCTTCTCAATTATTTCTTTTAACAACACTATACATGTATTTGTTTTGTTTTGCACAACTAGAGTATTGAACAGTGTGTTGGGAAACCTACTAACTGCTTTCTCTGCCCTGTTTCTTAGGCCCATCCATATTTCGGGCAAGTGAGGGCTGCTGAAACTAGCAGAATGAGGACACAGTAGCTTTCTTGTCTTGCTGTTAATGGGAAGAAAAAAAAC--T-GTGTAATGTACCTTGTGTATCCATTTAAGTGACATTCGTGAGAACTATGTGGATTTGAACTTGAGCAGACATCTGAATTCAGGAATTACAGATCTTCATCATTGAACATTTCAAGAGAAATAGTGTTTTTTAGATTTCCTGATCGTGACCTTGATTGCAAATGGAAGTGACTTGCTGGGCGTCAAAA</genome_strand>
        <mrna_strand>CAGCATCTAGTGTCACCAGAGT.......................................................................................................................................GCTATAGATTATCTTGACAAGCTTCTTCGTTATGATCATCAGACTAGACTTACGGCAAAAGAAGCAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCATCCATATTTCGGGCAAGTGAGGGCTGCTGAAACTAGCAGGATGAGGACACAGTAGCTTTCTTGTCTTGCTGTTAATGGGAAGAAAAAAAACTATGGTGTAATGTACCTTGTGTATCCATTTAAGTGACATTCGTGAGAACTATGTGGATTTGAACTTGAGCAGACATCTGAATTCAGGAATTACAGATCCTCATCATTGAACATTTCAAGAGAAATAGTGTTCTGTAGATTTCCTGCTCGGGACCTTGATTGCAAATGGAAGTGACTTGTTGGGCGTCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E270959" ref_strand="+" ref_description="SGN-E270959 [cLEM-22-C7]">
      <seq>agcatctagtgtcaccggaggctatagattatcttgacaagcttctccgttaccgatcatcagactagacttacggcaaaagaagcaatggcccatccatatttcgggccaagtgagggctgctgaaactagcagaatgaggacaccagtagctttcttgtcttgctgttaatgggaagaaaaaaaactgtgtaatgtaccttgtgtatccatttaagtgacattcgtgagaactatgtggatttgaacttgagcagacatctgaattcaggaattacagatcttcatcattgaacatttcaagagaaatagtgttttttagatttcctgatcgtgaccttgattgcaaatggaagtgacttgctgggcgtcaaaagtcaccccacccccccttccccaaagatactatctccctagatgtgaacaaaagcagatttttgaaaattagttcactttgtatattagtgcactggatttttctgcattcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="90492" stop="92175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90792" g_stop="90811" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90812" i_stop="90946" i_length="135">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90947" g_stop="91015" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="90" r_length="70" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91016" i_stop="91479" i_length="464">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.967" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91480" g_stop="91875" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="488" r_length="398" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91876" i_stop="91928" i_length="53">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.625" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91929" g_stop="91937" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="497" r_length="9" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E270959" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90792" e_stop="90811"/>
          <exon e_start="90947" e_stop="91015"/>
          <exon e_start="91480" e_stop="91875"/>
          <exon e_start="91929" e_stop="91937"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATCTAGTGTCACCGGAGGTACTCTTCTCTCTCTATTTATGTATCTATGGTATTTCTGAATAAGACGAAACCAGCAATGGTGACAAGTACATCTCAACCAATTGGCTGTTCTTCACTACCCACTTGATAATTGATTTTGGCTTCTCATTGCAGGCTATAGATTATCTTGACAAGCTTCTCCGTTA-CGATCATCAGACTAGACTTACGGCAAAAGAAGCAATGGTAATCCTCTTTATCCACTATTAATGAGCTTTAAACTCTGAGCCTCATCATTTTCTTCTCAGCTTCTGTCTTATATTGGTTTACTATTGCTTATTAAAGAAAATGGTTTCGTGACATTTTAAAACACATACTTTACCAAAACCAAAATGTAAGGTTATAAATAAATGAGATCAGTGAGGATGAGTGGGTGAAGAGACGCAACTTGACTAGTTTTTTGTTTTGAAATTCTGTTAGAAACAAGCTGGTGATTGTGAAGTGTCAGTGCTTTCTGTTTCTGCTCTTGGCTATGTTTTTTTCCTTTGTCATGATGTTGCATCTGCATCTTTCCTGGAATCAATCCACTCTCCCTTCTCAATTATTTCTTTTAACAACACTATACATGTATTTGTTTTGTTTTGCACAACTAGAGTATTGAACAGTGTGTTGGGAAACCTACTAACTGCTTTCTCTGCCCTGTTTCTTAGGCCCATCCATATTTCGGG-CAAGTGAGGGCTGCTGAAACTAGCAGAATGAGGACA-CAGTAGCTTTCTTGTCTTGCTGTTAATGGGAAGAAAAAAAACTGTGTAATGTACCTTGTGTATCCATTTAAGTGACATTCGTGAGAACTATGTGGATTTGAACTTGAGCAGACATCTGAATTCAGGAATTACAGATCTTCATCATTGAACATTTCAAGAGAAATAGTGTTTTTTAGATTTCCTGATCGTGACCTTGATTGCAAATGGAAGTGACTTGCTGGGCGTCAAAAGTCACCCCACCCCCCCTTCCCCAAAGATACTATCTCCCTAGATGTGAACAAAAGCAGATTTTTGAAAATTAGTTCACTTTGTATATTAGTGCACTGGATTTTTCTGCATTCAGCTTTGGTGGTTTGTCTTTTGTGTAAGTTCATTGATATGGTGTAGGGCTATAGAAGAATGAA</genome_strand>
        <mrna_strand>AGCATCTAGTGTCACCGGAG.......................................................................................................................................GCTATAGATTATCTTGACAAGCTTCTCCGTTACCGATCATCAGACTAGACTTACGGCAAAAGAAGCAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCATCCATATTTCGGGCCAAGTGAGGGCTGCTGAAACTAGCAGAATGAGGACACCAGTAGCTTTCTTGTCTTGCTGTTAATGGGAAGAAAAAAAACTGTGTAATGTACCTTGTGTATCCATTTAAGTGACATTCGTGAGAACTATGTGGATTTGAACTTGAGCAGACATCTGAATTCAGGAATTACAGATCTTCATCATTGAACATTTCAAGAGAAATAGTGTTTTTTAGATTTCCTGATCGTGACCTTGATTGCAAATGGAAGTGACTTGCTGGGCGTCAAAAGTCACCCCACCCCCCCTTCCCCAAAGATACTATCTCCCTAGATGTGAACAAAAGCAGATTTTTGAAAATTAGTTCACTTTGTATATTAGTGCACTGGATTTTTCTGCATTCA.....................................................AAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E201886" ref_strand="+" ref_description="SGN-E201886 [cLEC-18-E9]">
      <seq>tcatcttcgtatgagttcatatttcataatgacaacccaataatggcaactctcaatcatgtgttccactgtgtagtctcctttaaatgttctgtaatttggctcatgtagcatgtgaattgtttagtcactcttcttacatagatactggctatgtggttcagtactcctatctttctccttgtactttgaaaatctgaatttaggcaattcgattgttttttatgtcttattagattgtcttttgtctttcttttccagccttctacgatatttctgtgatgttgtataacttctgccaaaaaaaattttcttaggctttcaataggagatagcctaagtaaagagtcgcattcaagtctgaacaataatctttatggctctgcttatcagtgtctacacagattttcttaccgggtgaactatttttatgtcttctttcagcctctgataattcattagtgtctttagagttcatcttgattgatgtttgttttgatccttcactaacttgtatttattgttgcggatgatggcagtgcaaggtgtgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="93273" stop="92121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92973" g_stop="92421" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="553" r_length="553" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E201886" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92973" e_stop="92421"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCTTCGTATGAGTTCATATTTCATAATGACAACCCAATAATGGCAACTCTCAATCATGTGTTCCACTGTGTAGTCTCCTTTAAATGTTCTGTAATTTGGCTCATGTAGCATGTGAATTGTTTAGTCACTCTTCTTACATAGATACTGGCTATGTGGTTCAGTACTCCTATCTTTCTCCTTGTACTTTGAAAATCTGAATTTAGGCAATTCGATTGTTTTTTATGTCTTATTAGATTGTCTTTTGTCTTTCTTTTCCAGCCTTCTACGATATTTCTGTGATGTTGTATAACTTCTGCCAAAAAAAATTTTCTTAGGCTTTCAATAGGAGATAGCCTAAGTAAAGAGTCGCATTCAAGTCTGAACAATAATCTTTATGGCTCTGCTTATCAGTGTCTACACAGATTTTCTTACCGGGTGAACTATTTTTATGTCTTCTTTCAGCCTCTGATAATTCATTAGTGTCTTTAGAGTTCATCTTGATTGATGTTTGTTTTGATCCTTCACTAACTTGTATTTATTGTTGCGGATGATGGCAGTGCAAGGTGTGCAT</genome_strand>
        <mrna_strand>TCATCTTCGTATGAGTTCATATTTCATAATGACAACCCAATAATGGCAACTCTCAATCATGTGTTCCACTGTGTAGTCTCCTTTAAATGTTCTGTAATTTGGCTCATGTAGCATGTGAATTGTTTAGTCACTCTTCTTACATAGATACTGGCTATGTGGTTCAGTACTCCTATCTTTCTCCTTGTACTTTGAAAATCTGAATTTAGGCAATTCGATTGTTTTTTATGTCTTATTAGATTGTCTTTTGTCTTTCTTTTCCAGCCTTCTACGATATTTCTGTGATGTTGTATAACTTCTGCCAAAAAAAATTTTCTTAGGCTTTCAATAGGAGATAGCCTAAGTAAAGAGTCGCATTCAAGTCTGAACAATAATCTTTATGGCTCTGCTTATCAGTGTCTACACAGATTTTCTTACCGGGTGAACTATTTTTATGTCTTCTTTCAGCCTCTGATAATTCATTAGTGTCTTTAGAGTTCATCTTGATTGATGTTTGTTTTGATCCTTCACTAACTTGTATTTATTGTTGCGGATGATGGCAGTGCAAGGTGTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E455423" ref_strand="+" ref_description="SGN-E455423 [cSTS-26-A20]">
      <seq>gagaagtttccttttactctattcgctttcttcagtaatggaaggcttgttggcagtatttggagagtacgacttggcgttccatggcattagtagggagcagatggtcatctctctatgtattggatacacaactgctctctttgtcggtacctttttgggcatgctctcggatttgattggccagagaaaagtcagcttgttattttgcttgctgcatctttttgttgccatatggcggagggtgactggacatccaagtatttggctcgctagcatctgtctctctcttgcctctacgatatttttcttcaacttcgagacatggatggttgttgagcatgataagcttgagcagaggcaggattcagtgaatgacatgttttggttaatgacttttgttgaatctgcatcttttattggaagccaagtggttggtaactggttaattggtggtcatgaaaagacaagtttgcttgctccgtccagtgcagtggtaataatggctcttagtgctctggcttatgtcagccgaggatggaaggaagatccaaaatcaattcttcttaaagattatcagactaaattccgtacatacatactcagtgataaaagggtttggcttttgtcatggacccaagctaccatccacttctcaattgcagttttttggattacttgggctccaaccattgtggcagatgggagagaggttttactaggttttggtatacccatgtgtacttggtgcgaaaatgcttggaagcactgcattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="94758" stop="99487"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95058" g_stop="95092" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95093" i_stop="95926" i_length="834">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95927" g_stop="96071" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="180" r_length="145" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96072" i_stop="96537" i_length="466">
            <donor d_prob="0.955" d_score="0.96"/>
            <acceptor a_prob="0.869" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96538" g_stop="96706" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="349" r_length="169" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96707" i_stop="97253" i_length="547">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97254" g_stop="97512" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="608" r_length="259" r_score="0.973"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="97513" i_stop="98392" i_length="880">
            <donor d_prob="0.911" d_score="0.90"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98393" g_stop="98481" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="697" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="98482" i_stop="99109" i_length="628">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="99110" g_stop="99187" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="698" r_stop="776" r_length="79" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E455423" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E455423" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95058" e_stop="95092"/>
          <exon e_start="95927" e_stop="96071"/>
          <exon e_start="96538" e_stop="96706"/>
          <exon e_start="97254" e_stop="97512"/>
          <exon e_start="98393" e_stop="98481"/>
          <exon e_start="99110" e_stop="99187"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAGTTTCCTTTTACTCTATTCGCTTTCTTCAGGTGACGTTATTTTCCGAGTTGTTTTTTTCTTCCCACTGAATGTAGTATTAGGAAATGTCGCGTTCTAATTAACTCCTAGAGTCTACTTGCTGCTAAAATTGGTGCGAGGTAGTGAACTTTACGTGTTTCCCTGTTTATTAACTGCTGGATTTCCTCTGTTACAAATGTTTGATATTTACCCTCTATTTTGCCAAAAGAGAAAAATGAAACTTCTAGCAGGTTCTGGATTTCATAATTTTAACTTAAAGAAATGAATTAAACTAGTCTGACTTAGTTCTGAAAATGGTCAAGTTGACGTCTCAAACTAATTGGATAGATGGACTATCTCTTAATTTGTATGTTGCTACATTGAGCATTTTATCAAGTTAGATATTTTTTTCATTTGTGGAACACTCAGGTTCACAAAAGTGGATTATCCTGTTGTTATAGTAGAGTAATAAACATCTATACAAATTTGGATCAATCAAATTCAAAAGTTTATTCAAGACTCAATGAAGTTATTCTAACATATGATATTAAAATGTTGATACGGGAACTTTACATTGAATGTGGAGTGTGAATTGATATACTGATACAAGTTGCTCCCGTATAATCTGTTTATTAGCATATTATGATAAGGCTGAGCTGACACCACAAAGTTGTCAATTATTATTTTAACTTGATAGAGATATCGTAGTTACTGATCATAGAACACATGTTAAGGTGTACGCGAAATCACATATTCCATAAAAAAAGTCACGCTTCCCTTTTTATTACATCCTCGATATATAAGTTTGTCCTTTTTATGATTGCTTGGATTCAAAATCGTTATTTATTTAATTTAACTTTTTACAGTAATGGAAGGCTTGTTGGCAGTATTTGGAGAGTACGACTTAGCATTCCATGGCATTAGTAGGGAGCAGATGGTCATCTCTCTATGTGTTGGATACGCAACTGCTCTCTTTGTCGGTACCTTTTTGGGAATGCTCTCGGATTTGATGTAAGGGTACCTGCCTAGTTTTCTGTGTTTACCATGTTCCATCTCTATTTGCATAACCATTATGGTATACTGCAAGTTGCCATTTTCATTCTTTTGGAAATCTATATATCATAAATTCAAAATCTTAGACTACGATTATTTGGTTCAACATCATAATGAAATAGAGCTTCCATTTTGGGAGATATTAAGTATCAATCTCATCTACGTTCCTTTGATGCATTCTTTTTAGACTAAGAGATCATTTTTCTAATAAACTGTCCAACAAAGCTTGAACTTGAAGCTATGTGTTTGACCAGTATATGTTCCAAAGTACTAAACTGTATTGGTCCATGATGATTATCATTATTGTTTTCAATCGTTTATTGTTCTCAAAATTGTGATGGAGCACCATAAGATAAATGATTTTTTTGATTAGTCAAGAATACCATCTGTCAAACTTATTATTATGTTGTCTCTCTTCCTGCAGTGGCCAGAGAAAAGTCAGCTTGTTATTTTGCTTGCTGCATCTTTTTGTTGCCGTATGGAGGAGGGTTACTGGACATCCAACTATTTGGCTCGCTAGCATCTGTCTGTCTCTTACCTCTACAATATTTTTCTTCAACTTCGAGACATGGATGGTTGTTGAGCATGATAAGGTTTGTCTTCGGAATCTCTTTTTGTTATTATTGTATGATTTGCTATTTCATGTGGGAAGTACTATTATGAAGACTTGTTAACTCAAAATGCTTATCCACTTTTTAAAATGAATAAATCTGGGAAATCTTTTTTATACCAAAAAAAGATGATGAATATATGTAGCAAATGCAAAGGGGTTAGGATGGGGGAGTATGGATGTATACTCTATAGTCTTTCAGAGTTTCTTTCTTTGTCAACTACATAAGTTTATTTTGGACCTATTTTGCCGTAGCAGCATATGTGATCACATTTGAAAAAGATGATGAATAAATGTAGCAAATGCAAAGGGGTTAGGGTGGGGGAGTGTGGATCTATAGTCTTTTAGAGTTTCTTTCTCTGCCAACTACATCAGCCTATTTTGGACCTATTCTTCCATAGCAGCATATGTGATCACATTTGAACATTTTTCTCGGTCGGGGAGTCTTCACAGTCAGATTTCAGATCTCTGTATGAATTTGAATCGTTGATAGTAGAGTAAGATGAGTTATCCTTATAATCATTTTGCAGCTTGAGCAGAGGCAGGATTCAGTGAATGACATGTTTTGGTTAATGACTTTTGTTGAATCTGCATCTTTCATTGGAAGCCAAGTGGTTGGTAACTGGTTAATTGGTGGTCATGAAAAGACAACTTTGCTTGCTCCGTCCAGTGCAGTGGTAATAATGGCTCTTAGTGCTCTGGCTTATGTCAGCCGAGGATGGAAGGAAGATCCAAAATCAATTATTCTTAAAGAATATCAGACTAAATTTCATACATACATAATCAGTGGTATGAGTCCTCTATTATTATTCTTATGTTCCTTTTCCTGAAGATATAACTTTCTGTTGTCACAACTTAACTGAGGGACACATTTCCATAGCTAACTGTGACACTAAAAGAAATATTTGATCAATTCTGTGGATCTCCCGATAAAAAGATTCTATAAATTAGTAATATCAGATAAGTTTTACCACTGAAATCCACAATTCGAATATTGGAATTCTTGGATAGTCACAAGAAATCTGGCTTAACTTATTTCCTTACTCTTTTGCGCTTCCCTTTCCAGTAAAAGGAGGCAATGTGCCACATTTGAGTTAAAAAGAAGAAAGGGGCGGTGATAGAAAGAGAGGGAAAGTAAGGAAGGAGGAATTCAAAAGGCTGACCACAATCTCATAGGCATTGTCAATCTGATCTTTCGCTCCGTCTCCAATTGCTCCCTTATTCCCTCGACCAAAGTCCAAACTATGTGTAGCTACCTTATTTTTCTTACTGTGATCTTATTTTGGGTGGTACTTGATCAACTTAGCTCGAAAACAGTAGTCAATACTTTAGAAGAGCATGAAAGCATTACAGAGCCATAAAGCAGAGAGAAATTAACCCATTTATTGTTAATAAATACTACCAGAATGGTAGAACAAACAGTACGAGTATAGTAATCTTCTAATACAAAATGAGGCTGTACCTAATTTGGGTTTATATATTAGTTGAAATGTAATGCTTAAGATAGTTAAAATGGTCCAATTTCAGAAATTAGAAGTTCTGCAACATCTTAATATGATATGAGATGGAGAACATGCATCTTTAAGAAATGCTGTTTTTGATGACTAATTGCATAATTGGGAGTGGTTGGATCGACTTTCTAATCTTTTTCCAATTGTATTCTTGGCAGATAAAAGGGTTTGGCTTTTGTCATGGACCCAAGCTACCATGCACTTCTCAATTGCAGTTTTTTGGATTACTTGGGCTCCAACCATTGTGGTATGATTCTGATAAGATTTCTCGAAAGGATACTGTTTCAGCGTTTCTGACTCTCCAATTCCTATTATTGTTTTCTCATGGAAATGTATTCTAATAGGTGTGCTAAATCTTTTAATCTACTTACCTTAATTTTGAAGAGAGTAGTTGAAGTTATCTATATGAAAACACACCTCCTTGATTAGATTTAAAATGTTTAAAGTTAATTATTCTTTTGTACTTTCGGTCTCAAAATTGGAAATGGAAGTGTATCAAGGAAAAATGGATAGAGGAAGTATTTGAGTTACTACTGTGCGAGGCCTTCTTTGGAAAGATTGATGAGATCCATTCTAATACCGAGAGTAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGGCTGTGACTGTTTGTGTAAGATAAATCAGAATGTTGACTATACAAGTGCAATAAACCATTTTACTATTATTGAAATCTATGAAGTAATCTTTTTGTGGCCAATATCTATGTCTCTCAAACTTTGTGAATACTGATTTACCAAGATGATTGCTTAACATTACATTTCTTTCCCTTCTGAAATCCTATCTCACCATATTTGTTCCTGGTCCAAAAAGATTGATATATTTTCTCCTTAAAGTTTGTTTGGATTTTTAGGCAGATGGGAGAGGGGTTTTGCTAGG-TTTAGTATACCCCTGTGTACTTGGTGCGAAAATGCTTGGAAGCACTGCATTT</genome_strand>
        <mrna_strand>GAGAAGTTTCCTTTTACTCTATTCGCTTTCTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATGGAAGGCTTGTTGGCAGTATTTGGAGAGTACGACTTGGCGTTCCATGGCATTAGTAGGGAGCAGATGGTCATCTCTCTATGTATTGGATACACAACTGCTCTCTTTGTCGGTACCTTTTTGGGCATGCTCTCGGATTTGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCCAGAGAAAAGTCAGCTTGTTATTTTGCTTGCTGCATCTTTTTGTTGCCATATGGCGGAGGGTGACTGGACATCCAAGTATTTGGCTCGCTAGCATCTGTCTCTCTCTTGCCTCTACGATATTTTTCTTCAACTTCGAGACATGGATGGTTGTTGAGCATGATAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGAGCAGAGGCAGGATTCAGTGAATGACATGTTTTGGTTAATGACTTTTGTTGAATCTGCATCTTTTATTGGAAGCCAAGTGGTTGGTAACTGGTTAATTGGTGGTCATGAAAAGACAAGTTTGCTTGCTCCGTCCAGTGCAGTGGTAATAATGGCTCTTAGTGCTCTGGCTTATGTCAGCCGAGGATGGAAGGAAGATCCAAAATCAATTCTTCTTAAAGATTATCAGACTAAATTCCGTACATACATACTCAGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAAGGGTTTGGCTTTTGTCATGGACCCAAGCTACCATCCACTTCTCAATTGCAGTTTTTTGGATTACTTGGGCTCCAACCATTGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGATGGGAGAGAGGTTTTACTAGGTTTTGGTATACCCATGTGTACTTGGTGCGAAAATGCTTGGAAGCACTGCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E425819" ref_strand="+" ref_description="SGN-E425819 [STM-45-J23]">
      <seq>gagaagtttccttttactctattcgctttcttcagtaatggaaggcttgttggcagtatttggagagtacgacttggcgttccatggcattagtagggagcagatggtcatctctctatgtattggatacacaactgctctctttgtcggtacctttttgggcatgctctcggatttgattggccagagaaaagtcagcttgttattttgcttgctgcatctttttgttgccatatggcggagggtgactggacatccaagtatttggctcgctagcatctgtctctctcttgcctctacgatatttttcttcaacttcgagacatggatggttgttgagcatgataagcttgagcagaggcaggattcagtgaatgacatgttttggttaatgacttttgttgaatctgcatcttttattggaagccaagtggttggtaactggttaattggtggtcatgaaaagacaagtttgcttgctccgtccagtgcagtggtaataatggctcttagtgctctggcttatgtcagccgaggatggaaggaagatccaaaatcaattcttcttaaagattatcagactaaattccgtacatacatactcagtgataaaagggttttggcttttgtcatggacccaagctaccatccactttctcattgcagtttttttggattacttgggctccaaccattgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="94758" stop="98782"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95058" g_stop="95092" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95093" i_stop="95926" i_length="834">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95927" g_stop="96071" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="180" r_length="145" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96072" i_stop="96537" i_length="466">
            <donor d_prob="0.955" d_score="0.96"/>
            <acceptor a_prob="0.869" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96538" g_stop="96706" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="349" r_length="169" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96707" i_stop="97253" i_length="547">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97254" g_stop="97512" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="608" r_length="259" r_score="0.973"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="97513" i_stop="98392" i_length="880">
            <donor d_prob="0.911" d_score="0.90"/>
            <acceptor a_prob="0.990" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98393" g_stop="98482" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="700" r_length="92" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E425819" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E425819" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95058" e_stop="95092"/>
          <exon e_start="95927" e_stop="96071"/>
          <exon e_start="96538" e_stop="96706"/>
          <exon e_start="97254" e_stop="97512"/>
          <exon e_start="98393" e_stop="98482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAGTTTCCTTTTACTCTATTCGCTTTCTTCAGGTGACGTTATTTTCCGAGTTGTTTTTTTCTTCCCACTGAATGTAGTATTAGGAAATGTCGCGTTCTAATTAACTCCTAGAGTCTACTTGCTGCTAAAATTGGTGCGAGGTAGTGAACTTTACGTGTTTCCCTGTTTATTAACTGCTGGATTTCCTCTGTTACAAATGTTTGATATTTACCCTCTATTTTGCCAAAAGAGAAAAATGAAACTTCTAGCAGGTTCTGGATTTCATAATTTTAACTTAAAGAAATGAATTAAACTAGTCTGACTTAGTTCTGAAAATGGTCAAGTTGACGTCTCAAACTAATTGGATAGATGGACTATCTCTTAATTTGTATGTTGCTACATTGAGCATTTTATCAAGTTAGATATTTTTTTCATTTGTGGAACACTCAGGTTCACAAAAGTGGATTATCCTGTTGTTATAGTAGAGTAATAAACATCTATACAAATTTGGATCAATCAAATTCAAAAGTTTATTCAAGACTCAATGAAGTTATTCTAACATATGATATTAAAATGTTGATACGGGAACTTTACATTGAATGTGGAGTGTGAATTGATATACTGATACAAGTTGCTCCCGTATAATCTGTTTATTAGCATATTATGATAAGGCTGAGCTGACACCACAAAGTTGTCAATTATTATTTTAACTTGATAGAGATATCGTAGTTACTGATCATAGAACACATGTTAAGGTGTACGCGAAATCACATATTCCATAAAAAAAGTCACGCTTCCCTTTTTATTACATCCTCGATATATAAGTTTGTCCTTTTTATGATTGCTTGGATTCAAAATCGTTATTTATTTAATTTAACTTTTTACAGTAATGGAAGGCTTGTTGGCAGTATTTGGAGAGTACGACTTAGCATTCCATGGCATTAGTAGGGAGCAGATGGTCATCTCTCTATGTGTTGGATACGCAACTGCTCTCTTTGTCGGTACCTTTTTGGGAATGCTCTCGGATTTGATGTAAGGGTACCTGCCTAGTTTTCTGTGTTTACCATGTTCCATCTCTATTTGCATAACCATTATGGTATACTGCAAGTTGCCATTTTCATTCTTTTGGAAATCTATATATCATAAATTCAAAATCTTAGACTACGATTATTTGGTTCAACATCATAATGAAATAGAGCTTCCATTTTGGGAGATATTAAGTATCAATCTCATCTACGTTCCTTTGATGCATTCTTTTTAGACTAAGAGATCATTTTTCTAATAAACTGTCCAACAAAGCTTGAACTTGAAGCTATGTGTTTGACCAGTATATGTTCCAAAGTACTAAACTGTATTGGTCCATGATGATTATCATTATTGTTTTCAATCGTTTATTGTTCTCAAAATTGTGATGGAGCACCATAAGATAAATGATTTTTTTGATTAGTCAAGAATACCATCTGTCAAACTTATTATTATGTTGTCTCTCTTCCTGCAGTGGCCAGAGAAAAGTCAGCTTGTTATTTTGCTTGCTGCATCTTTTTGTTGCCGTATGGAGGAGGGTTACTGGACATCCAACTATTTGGCTCGCTAGCATCTGTCTGTCTCTTACCTCTACAATATTTTTCTTCAACTTCGAGACATGGATGGTTGTTGAGCATGATAAGGTTTGTCTTCGGAATCTCTTTTTGTTATTATTGTATGATTTGCTATTTCATGTGGGAAGTACTATTATGAAGACTTGTTAACTCAAAATGCTTATCCACTTTTTAAAATGAATAAATCTGGGAAATCTTTTTTATACCAAAAAAAGATGATGAATATATGTAGCAAATGCAAAGGGGTTAGGATGGGGGAGTATGGATGTATACTCTATAGTCTTTCAGAGTTTCTTTCTTTGTCAACTACATAAGTTTATTTTGGACCTATTTTGCCGTAGCAGCATATGTGATCACATTTGAAAAAGATGATGAATAAATGTAGCAAATGCAAAGGGGTTAGGGTGGGGGAGTGTGGATCTATAGTCTTTTAGAGTTTCTTTCTCTGCCAACTACATCAGCCTATTTTGGACCTATTCTTCCATAGCAGCATATGTGATCACATTTGAACATTTTTCTCGGTCGGGGAGTCTTCACAGTCAGATTTCAGATCTCTGTATGAATTTGAATCGTTGATAGTAGAGTAAGATGAGTTATCCTTATAATCATTTTGCAGCTTGAGCAGAGGCAGGATTCAGTGAATGACATGTTTTGGTTAATGACTTTTGTTGAATCTGCATCTTTCATTGGAAGCCAAGTGGTTGGTAACTGGTTAATTGGTGGTCATGAAAAGACAACTTTGCTTGCTCCGTCCAGTGCAGTGGTAATAATGGCTCTTAGTGCTCTGGCTTATGTCAGCCGAGGATGGAAGGAAGATCCAAAATCAATTATTCTTAAAGAATATCAGACTAAATTTCATACATACATAATCAGTGGTATGAGTCCTCTATTATTATTCTTATGTTCCTTTTCCTGAAGATATAACTTTCTGTTGTCACAACTTAACTGAGGGACACATTTCCATAGCTAACTGTGACACTAAAAGAAATATTTGATCAATTCTGTGGATCTCCCGATAAAAAGATTCTATAAATTAGTAATATCAGATAAGTTTTACCACTGAAATCCACAATTCGAATATTGGAATTCTTGGATAGTCACAAGAAATCTGGCTTAACTTATTTCCTTACTCTTTTGCGCTTCCCTTTCCAGTAAAAGGAGGCAATGTGCCACATTTGAGTTAAAAAGAAGAAAGGGGCGGTGATAGAAAGAGAGGGAAAGTAAGGAAGGAGGAATTCAAAAGGCTGACCACAATCTCATAGGCATTGTCAATCTGATCTTTCGCTCCGTCTCCAATTGCTCCCTTATTCCCTCGACCAAAGTCCAAACTATGTGTAGCTACCTTATTTTTCTTACTGTGATCTTATTTTGGGTGGTACTTGATCAACTTAGCTCGAAAACAGTAGTCAATACTTTAGAAGAGCATGAAAGCATTACAGAGCCATAAAGCAGAGAGAAATTAACCCATTTATTGTTAATAAATACTACCAGAATGGTAGAACAAACAGTACGAGTATAGTAATCTTCTAATACAAAATGAGGCTGTACCTAATTTGGGTTTATATATTAGTTGAAATGTAATGCTTAAGATAGTTAAAATGGTCCAATTTCAGAAATTAGAAGTTCTGCAACATCTTAATATGATATGAGATGGAGAACATGCATCTTTAAGAAATGCTGTTTTTGATGACTAATTGCATAATTGGGAGTGGTTGGATCGACTTTCTAATCTTTTTCCAATTGTATTCTTGGCAGATAAAAGGGTTT-GGCTTTTGTCATGGACCCAAGCTACCATGCACTTCTCAATTGCAG-TTTTTTGGATTACTTGGGCTCCAACCATTGTGG</genome_strand>
        <mrna_strand>GAGAAGTTTCCTTTTACTCTATTCGCTTTCTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATGGAAGGCTTGTTGGCAGTATTTGGAGAGTACGACTTGGCGTTCCATGGCATTAGTAGGGAGCAGATGGTCATCTCTCTATGTATTGGATACACAACTGCTCTCTTTGTCGGTACCTTTTTGGGCATGCTCTCGGATTTGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCCAGAGAAAAGTCAGCTTGTTATTTTGCTTGCTGCATCTTTTTGTTGCCATATGGCGGAGGGTGACTGGACATCCAAGTATTTGGCTCGCTAGCATCTGTCTCTCTCTTGCCTCTACGATATTTTTCTTCAACTTCGAGACATGGATGGTTGTTGAGCATGATAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGAGCAGAGGCAGGATTCAGTGAATGACATGTTTTGGTTAATGACTTTTGTTGAATCTGCATCTTTTATTGGAAGCCAAGTGGTTGGTAACTGGTTAATTGGTGGTCATGAAAAGACAAGTTTGCTTGCTCCGTCCAGTGCAGTGGTAATAATGGCTCTTAGTGCTCTGGCTTATGTCAGCCGAGGATGGAAGGAAGATCCAAAATCAATTCTTCTTAAAGATTATCAGACTAAATTCCGTACATACATACTCAGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAAGGGTTTTGGCTTTTGTCATGGACCCAAGCTACCATCCACTTTCTCATTGCAGTTTTTTTGGATTACTTGGGCTCCAACCATTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E700950" ref_strand="+" ref_description="SGN-E700950 [FA14CE03]">
      <seq>gttcgatacacaactgctctctttgtcggtacctttttgggaatgctctcggatttgattggccacagaaaagtcaccttgttattttgcttgctgcatctttttgttgccgtatggaggagggttactggacatccaactatttggctcgctagcatctgtctgtctcttacctctacaatatttttcttcaacttccagacatggatggttgttgagcatgataagcttgagcagaagcaggattcactgaatgacatgttttggttagtgacttttgttgaatctgcatctttcattggaagccaagtggttggtaactggttaattggcggtcgtgaaaagacaactttgcttgctccgtccagtgcagtggtaataatggctcttagtgctctggcttatgtcagccgaggatggaacgaatatccaaaatcaattattcttaaagaatatcagactagatttcatacatacataatcagtgataaaagggtttggcttttgtcatggacccaagctaccatgcacttctcaattgcagttttttggattacttgggctccaaccattgtggcagatgggagatgggttttgctaggattactatacccctgtgtacttggtgcgaaaatgcttgcaagcactgcattttcctggatctctagtggccctttatcactccgaacagacgagtgcttattatatgcctgcattattatgggcttagccacttccattgcagcttatgattatcaggatgttgaaattctcttgatgctattctgcatatttcatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="95713" stop="99712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96013" g_stop="96071" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96072" i_stop="96537" i_length="466">
            <donor d_prob="0.955" d_score="0.98"/>
            <acceptor a_prob="0.869" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96538" g_stop="96706" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="228" r_length="169" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96707" i_stop="97253" i_length="547">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97254" g_stop="97512" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="487" r_length="259" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97513" i_stop="98392" i_length="880">
            <donor d_prob="0.911" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98393" g_stop="98481" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="576" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98482" i_stop="99109" i_length="628">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99110" g_stop="99292" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="759" r_length="183" r_score="0.934"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99293" i_stop="99371" i_length="79">
            <donor d_prob="0.987" d_score="0.90"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="99372" g_stop="99412" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="760" r_stop="800" r_length="41" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E700950" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>800</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96013" e_stop="96071"/>
          <exon e_start="96538" e_stop="96706"/>
          <exon e_start="97254" e_stop="97512"/>
          <exon e_start="98393" e_stop="98481"/>
          <exon e_start="99110" e_stop="99292"/>
          <exon e_start="99372" e_stop="99412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGATACGCAACTGCTCTCTTTGTCGGTACCTTTTTGGGAATGCTCTCGGATTTGATGTAAGGGTACCTGCCTAGTTTTCTGTGTTTACCATGTTCCATCTCTATTTGCATAACCATTATGGTATACTGCAAGTTGCCATTTTCATTCTTTTGGAAATCTATATATCATAAATTCAAAATCTTAGACTACGATTATTTGGTTCAACATCATAATGAAATAGAGCTTCCATTTTGGGAGATATTAAGTATCAATCTCATCTACGTTCCTTTGATGCATTCTTTTTAGACTAAGAGATCATTTTTCTAATAAACTGTCCAACAAAGCTTGAACTTGAAGCTATGTGTTTGACCAGTATATGTTCCAAAGTACTAAACTGTATTGGTCCATGATGATTATCATTATTGTTTTCAATCGTTTATTGTTCTCAAAATTGTGATGGAGCACCATAAGATAAATGATTTTTTTGATTAGTCAAGAATACCATCTGTCAAACTTATTATTATGTTGTCTCTCTTCCTGCAGTGGCCAGAGAAAAGTCAGCTTGTTATTTTGCTTGCTGCATCTTTTTGTTGCCGTATGGAGGAGGGTTACTGGACATCCAACTATTTGGCTCGCTAGCATCTGTCTGTCTCTTACCTCTACAATATTTTTCTTCAACTTCGAGACATGGATGGTTGTTGAGCATGATAAGGTTTGTCTTCGGAATCTCTTTTTGTTATTATTGTATGATTTGCTATTTCATGTGGGAAGTACTATTATGAAGACTTGTTAACTCAAAATGCTTATCCACTTTTTAAAATGAATAAATCTGGGAAATCTTTTTTATACCAAAAAAAGATGATGAATATATGTAGCAAATGCAAAGGGGTTAGGATGGGGGAGTATGGATGTATACTCTATAGTCTTTCAGAGTTTCTTTCTTTGTCAACTACATAAGTTTATTTTGGACCTATTTTGCCGTAGCAGCATATGTGATCACATTTGAAAAAGATGATGAATAAATGTAGCAAATGCAAAGGGGTTAGGGTGGGGGAGTGTGGATCTATAGTCTTTTAGAGTTTCTTTCTCTGCCAACTACATCAGCCTATTTTGGACCTATTCTTCCATAGCAGCATATGTGATCACATTTGAACATTTTTCTCGGTCGGGGAGTCTTCACAGTCAGATTTCAGATCTCTGTATGAATTTGAATCGTTGATAGTAGAGTAAGATGAGTTATCCTTATAATCATTTTGCAGCTTGAGCAGAGGCAGGATTCAGTGAATGACATGTTTTGGTTAATGACTTTTGTTGAATCTGCATCTTTCATTGGAAGCCAAGTGGTTGGTAACTGGTTAATTGGTGGTCATGAAAAGACAACTTTGCTTGCTCCGTCCAGTGCAGTGGTAATAATGGCTCTTAGTGCTCTGGCTTATGTCAGCCGAGGATGGAAGGAAGATCCAAAATCAATTATTCTTAAAGAATATCAGACTAAATTTCATACATACATAATCAGTGGTATGAGTCCTCTATTATTATTCTTATGTTCCTTTTCCTGAAGATATAACTTTCTGTTGTCACAACTTAACTGAGGGACACATTTCCATAGCTAACTGTGACACTAAAAGAAATATTTGATCAATTCTGTGGATCTCCCGATAAAAAGATTCTATAAATTAGTAATATCAGATAAGTTTTACCACTGAAATCCACAATTCGAATATTGGAATTCTTGGATAGTCACAAGAAATCTGGCTTAACTTATTTCCTTACTCTTTTGCGCTTCCCTTTCCAGTAAAAGGAGGCAATGTGCCACATTTGAGTTAAAAAGAAGAAAGGGGCGGTGATAGAAAGAGAGGGAAAGTAAGGAAGGAGGAATTCAAAAGGCTGACCACAATCTCATAGGCATTGTCAATCTGATCTTTCGCTCCGTCTCCAATTGCTCCCTTATTCCCTCGACCAAAGTCCAAACTATGTGTAGCTACCTTATTTTTCTTACTGTGATCTTATTTTGGGTGGTACTTGATCAACTTAGCTCGAAAACAGTAGTCAATACTTTAGAAGAGCATGAAAGCATTACAGAGCCATAAAGCAGAGAGAAATTAACCCATTTATTGTTAATAAATACTACCAGAATGGTAGAACAAACAGTACGAGTATAGTAATCTTCTAATACAAAATGAGGCTGTACCTAATTTGGGTTTATATATTAGTTGAAATGTAATGCTTAAGATAGTTAAAATGGTCCAATTTCAGAAATTAGAAGTTCTGCAACATCTTAATATGATATGAGATGGAGAACATGCATCTTTAAGAAATGCTGTTTTTGATGACTAATTGCATAATTGGGAGTGGTTGGATCGACTTTCTAATCTTTTTCCAATTGTATTCTTGGCAGATAAAAGGGTTTGGCTTTTGTCATGGACCCAAGCTACCATGCACTTCTCAATTGCAGTTTTTTGGATTACTTGGGCTCCAACCATTGTGGTATGATTCTGATAAGATTTCTCGAAAGGATACTGTTTCAGCGTTTCTGACTCTCCAATTCCTATTATTGTTTTCTCATGGAAATGTATTCTAATAGGTGTGCTAAATCTTTTAATCTACTTACCTTAATTTTGAAGAGAGTAGTTGAAGTTATCTATATGAAAACACACCTCCTTGATTAGATTTAAAATGTTTAAAGTTAATTATTCTTTTGTACTTTCGGTCTCAAAATTGGAAATGGAAGTGTATCAAGGAAAAATGGATAGAGGAAGTATTTGAGTTACTACTGTGCGAGGCCTTCTTTGGAAAGATTGATGAGATCCATTCTAATACCGAGAGTAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGGCTGTGACTGTTTGTGTAAGATAAATCAGAATGTTGACTATACAAGTGCAATAAACCATTTTACTATTATTGAAATCTATGAAGTAATCTTTTTGTGGCCAATATCTATGTCTCTCAAACTTTGTGAATACTGATTTACCAAGATGATTGCTTAACATTACATTTCTTTCCCTTCTGAAATCCTATCTCACCATATTTGTTCCTGGTCCAAAAAGATTGATATATTTTCTCCTTAAAGTTTGTTTGGATTTTTAGGCAGATGGGAGAGGGGTTTTGCTAGGTTTAGTATACCCCTGTGTACTTGGTGCGAAAATGCTTGGAAGCACTGCATTTTCCTGGTTCTCTAGTGGCCCTTTATCACTCCGAACAGAGGAGTGCTTAGTATATGCCTGTATTATTATGGGCTTTGTCACTTCCATTGTAGCTTTTGATTATCAGGTATTTATGAGTTTTCTTATCTTCAAGCTGTTCAAATATCAAGTAATGTCATCAAACTTAATTTGTGATATTGTTGCAGGATGTTGAAATTCTTTTGATGCTATTCTGCATATTTCATGC</genome_strand>
        <mrna_strand>GTTCGATACACAACTGCTCTCTTTGTCGGTACCTTTTTGGGAATGCTCTCGGATTTGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCCACAGAAAAGTCACCTTGTTATTTTGCTTGCTGCATCTTTTTGTTGCCGTATGGAGGAGGGTTACTGGACATCCAACTATTTGGCTCGCTAGCATCTGTCTGTCTCTTACCTCTACAATATTTTTCTTCAACTTCCAGACATGGATGGTTGTTGAGCATGATAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGAGCAGAAGCAGGATTCACTGAATGACATGTTTTGGTTAGTGACTTTTGTTGAATCTGCATCTTTCATTGGAAGCCAAGTGGTTGGTAACTGGTTAATTGGCGGTCGTGAAAAGACAACTTTGCTTGCTCCGTCCAGTGCAGTGGTAATAATGGCTCTTAGTGCTCTGGCTTATGTCAGCCGAGGATGGAACGAATATCCAAAATCAATTATTCTTAAAGAATATCAGACTAGATTTCATACATACATAATCAGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAAGGGTTTGGCTTTTGTCATGGACCCAAGCTACCATGCACTTCTCAATTGCAGTTTTTTGGATTACTTGGGCTCCAACCATTGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGATGGGAGATGGGTTTTGCTAGGATTACTATACCCCTGTGTACTTGGTGCGAAAATGCTTGCAAGCACTGCATTTTCCTGGATCTCTAGTGGCCCTTTATCACTCCGAACAGACGAGTGCTTATTATATGCCTGCATTATTATGGGCTTAGCCACTTCCATTGCAGCTTATGATTATCAG...............................................................................GATGTTGAAATTCTCTTGATGCTATTCTGCATATTTCATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E557949" ref_strand="+" ref_description="SGN-E557949 [16828]">
      <seq>atctttttgttgcatatggcggagggtgactggacatccaagtatttggctcgctagcatctgtctctctcttgcctctacgatatttttcttcaacttcgagacatggattgtttgttgagcatgataagcttgagcagaggcaggattcagtgaatgacatgttttggtttatgactttttgttgaatctgcatcttttattggaagccaagtggttggtaactggttaattggtggtcatgaaaagacaagtttgcttgctccgtccagtgcagtggtaataatggctcttaatgctctggcttatgtcagcgaggatggaaggaagatcccaaatcaattcttcttaaagattatcagactaaattccgtacatacatactcagtgataaaagggtttggcttttgtcatggacccaagctaccatccacttctcaattgcagtttttttggattacttgggctccaaccattgtggtatgattttgacaagcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="96276" stop="98800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96576" g_stop="96706" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="0.916"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96707" i_stop="97253" i_length="547">
            <donor d_prob="0.996" d_score="0.92"/>
            <acceptor a_prob="0.982" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97254" g_stop="97512" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="390" r_length="259" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97513" i_stop="98392" i_length="880">
            <donor d_prob="0.911" d_score="0.90"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98393" g_stop="98501" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="500" r_length="110" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E557949" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E557949" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96576" e_stop="96706"/>
          <exon e_start="97254" e_stop="97512"/>
          <exon e_start="98393" e_stop="98501"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTTTTGTTGCCGTATGGAGGAGGGTTACTGGACATCCAACTATTTGGCTCGCTAGCATCTGTCTGTCTCTTACCTCTACAATATTTTTCTTCAACTTCGAGACATGGA-TGGTTGTTGAGCATGATAAGGTTTGTCTTCGGAATCTCTTTTTGTTATTATTGTATGATTTGCTATTTCATGTGGGAAGTACTATTATGAAGACTTGTTAACTCAAAATGCTTATCCACTTTTTAAAATGAATAAATCTGGGAAATCTTTTTTATACCAAAAAAAGATGATGAATATATGTAGCAAATGCAAAGGGGTTAGGATGGGGGAGTATGGATGTATACTCTATAGTCTTTCAGAGTTTCTTTCTTTGTCAACTACATAAGTTTATTTTGGACCTATTTTGCCGTAGCAGCATATGTGATCACATTTGAAAAAGATGATGAATAAATGTAGCAAATGCAAAGGGGTTAGGGTGGGGGAGTGTGGATCTATAGTCTTTTAGAGTTTCTTTCTCTGCCAACTACATCAGCCTATTTTGGACCTATTCTTCCATAGCAGCATATGTGATCACATTTGAACATTTTTCTCGGTCGGGGAGTCTTCACAGTCAGATTTCAGATCTCTGTATGAATTTGAATCGTTGATAGTAGAGTAAGATGAGTTATCCTTATAATCATTTTGCAGCTTGAGCAGAGGCAGGATTCAGTGAATGACATGTTTTGGTTAATGAC-TTTTGTTGAATCTGCATCTTTCATTGGAAGCCAAGTGGTTGGTAACTGGTTAATTGGTGGTCATGAAAAGACAACTTTGCTTGCTCCGTCCAGTGCAGTGGTAATAATGGCTCTTAGTGCTCTGGCTTATGTCAGCCGAGGATGGAAGGAAGATCCAAAATCAATTATTCTTAAAGAATATCAGACTAAATTTCATACATACATAATCAGTGGTATGAGTCCTCTATTATTATTCTTATGTTCCTTTTCCTGAAGATATAACTTTCTGTTGTCACAACTTAACTGAGGGACACATTTCCATAGCTAACTGTGACACTAAAAGAAATATTTGATCAATTCTGTGGATCTCCCGATAAAAAGATTCTATAAATTAGTAATATCAGATAAGTTTTACCACTGAAATCCACAATTCGAATATTGGAATTCTTGGATAGTCACAAGAAATCTGGCTTAACTTATTTCCTTACTCTTTTGCGCTTCCCTTTCCAGTAAAAGGAGGCAATGTGCCACATTTGAGTTAAAAAGAAGAAAGGGGCGGTGATAGAAAGAGAGGGAAAGTAAGGAAGGAGGAATTCAAAAGGCTGACCACAATCTCATAGGCATTGTCAATCTGATCTTTCGCTCCGTCTCCAATTGCTCCCTTATTCCCTCGACCAAAGTCCAAACTATGTGTAGCTACCTTATTTTTCTTACTGTGATCTTATTTTGGGTGGTACTTGATCAACTTAGCTCGAAAACAGTAGTCAATACTTTAGAAGAGCATGAAAGCATTACAGAGCCATAAAGCAGAGAGAAATTAACCCATTTATTGTTAATAAATACTACCAGAATGGTAGAACAAACAGTACGAGTATAGTAATCTTCTAATACAAAATGAGGCTGTACCTAATTTGGGTTTATATATTAGTTGAAATGTAATGCTTAAGATAGTTAAAATGGTCCAATTTCAGAAATTAGAAGTTCTGCAACATCTTAATATGATATGAGATGGAGAACATGCATCTTTAAGAAATGCTGTTTTTGATGACTAATTGCATAATTGGGAGTGGTTGGATCGACTTTCTAATCTTTTTCCAATTGTATTCTTGGCAGATAAAAGGGTTTGGCTTTTGTCATGGACCCAAGCTACCATGCACTTCTCAATTGCAG-TTTTTTGGATTACTTGGGCTCCAACCATTGTGGTATGATTCTGATAAGATTT</genome_strand>
        <mrna_strand>ATCTTTTTGTTG-CATATGGCGGAGGGTGACTGGACATCCAAGTATTTGGCTCGCTAGCATCTGTCTCTCTCTTGCCTCTACGATATTTTTCTTCAACTTCGAGACATGGATTGTTTGTTGAGCATGATAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGAGCAGAGGCAGGATTCAGTGAATGACATGTTTTGGTTTATGACTTTTTGTTGAATCTGCATCTTTTATTGGAAGCCAAGTGGTTGGTAACTGGTTAATTGGTGGTCATGAAAAGACAAGTTTGCTTGCTCCGTCCAGTGCAGTGGTAATAATGGCTCTTAATGCTCTGGCTTATGTCAG-CGAGGATGGAAGGAAGATCCCAAATCAATTCTTCTTAAAGATTATCAGACTAAATTCCGTACATACATACTCAGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAAGGGTTTGGCTTTTGTCATGGACCCAAGCTACCATCCACTTCTCAATTGCAGTTTTTTTGGATTACTTGGGCTCCAACCATTGTGGTATGATTTTGACAAGCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E353937" ref_strand="+" ref_description="SGN-E353937 [cTOS-10-J8]">
      <seq>tttttttttacgtaatctttcttcaaattataatatctgcaatccaaccaaataattaaaggaaaaatcaccatgatatagagatcatgtctgccggtttaaagaaaacatgataagaaagaagagaaatttctcttactctttggtgatctctgaatatgaaacaagactttccgtggaccatcacaattctgaagagctggtaaaatcatgcaaactaagccaccatgtattctggtactcctctgggataacacttctccacaatacttactagaagcaaagtattaatttagccttttcagggcatcaatctgcaaagtggctcgaaagcaaaattgaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="101030" stop="100089"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100733" g_stop="100389" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E353937" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>345</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100733" e_stop="100389"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTCTTTACGTAATCTTTCTTCAAATTATAATATCTGCAATCCAACCAAATAATTAAAGGAAAAATCACCATGATATAGAGATCATGTCTGCCGGTTTAAAGAAAACATGATAAGAAAGAAGAGAAATTTCTCTTACTCTTTGGTGATCTCTGAATATGAAACAAGACTTTCCGTGGACCATCACAATTCTGAAGAGCTGTTAAAATCATGCAAACTAAGCCACCATGTATTCTGTTACTCCTCTGGTATAACACTTCTCCACAATACTTACTAGAAGCAAAGTATTAATTTAGCCTTTTCAGGGCATCAATCTGCAAAGTGTCTCGAAAGCAAAATTGAACT</genome_strand>
        <mrna_strand>TTTTTTTTTACGTAATCTTTCTTCAAATTATAATATCTGCAATCCAACCAAATAATTAAAGGAAAAATCACCATGATATAGAGATCATGTCTGCCGGTTTAAAGAAAACATGATAAGAAAGAAGAGAAATTTCTCTTACTCTTTGGTGATCTCTGAATATGAAACAAGACTTTCCGTGGACCATCACAATTCTGAAGAGCTGGTAAAATCATGCAAACTAAGCCACCATGTATTCTGGTACTCCTCTGGGATAACACTTCTCCACAATACTTACTAGAAGCAAAGTATTAATTTAGCCTTTTCAGGGCATCAATCTGCAAAGTGGCTCGAAAGCAAAATTGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E427839" ref_strand="-" ref_description="SGN-E427839 [STM-49-M15]">
      <seq>tcaatagcttagcaagaagaaacttcacatgtgattcaagcaaaaaatacagcgtcacagatttgaattacccttcctttgctgtttcattccctgctgataccggttcaaacacaatcaagtacagccggacactgactaatgttggaccagctggaacatacaaagttactgtttcttcccctaatagttcagtgaaaattatagttgagcctgaaacagtgagtttcactcagattaatgagaagaaatcctatactgtgagttttactgctccatcaaagtcctcatctacggatgtattcggtagaattgagtggtcagatgggaagcatgtggttagtagtccagttgcaatatcatggtcatgaagacatagctaatagcttctgtttattttatgtataagttcatggttttctgctttttaagtttcattccagcacaaaagttggtagctggtttcaagatttttttatggataacatgaaagaatcaaagaaatgtatgccttgtacaatatcttgctcactgtacagtgttgttttataccaagtattgtaagcaattctaatatatatttttaacatgaagttcaaccatcaaagaggggggatatatggagcaaaaaaaaaaaaatttggatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="104161" stop="103007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103861" g_stop="103314" g_length="548"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="539" r_length="539" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103313" i_stop="103246" i_length="68">
            <donor d_prob="0.517" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103245" g_stop="103208" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="576" r_length="37" r_score="0.842"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="627" polyA_stop="640"/>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E427839" ref_strand="-">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="0.903" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E427839" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="103861" e_stop="103314"/>
          <exon e_start="103245" e_stop="103208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACAGCTTAGCGAGAAGAAACTTCACGTGTGATTCAAGCAAAACATACAGCGTCACAGATTTGAATTACCCTTCATTTGCTGTTTCATTCGTTGCCGGGAGTGACGGTTCAAACACAATCAAGTACAGCCGGACATTGACTAATGTTGGACCGGCTGGAACATACAAAGTTACAGTTTCTTCCCCAAATAGTTCAGTGAAAATTATAGTTGAGCCTGAAACATTGAGTTTCACTCAGATTAATGAGAAGAAATCGTATACAGTGAGTTTTACTGCTCCATCAAAGTCCTCAGCTACGGATGTATTCGGTAGAATTGAGTGGTCAGATGGGAAGCATGTGGTTAGTAGTCCAGTTGCAATTTCTTGGTCATGAATAATATGAAGACATAGCTATAGCTTCTGTTAATTTTATGTATAAGTTGATGTTTTTCTGC-TTTTAAGTTTCATTCCAGCACAAAAGTTTGTAGCTGGTCTCAAGATTTTTTTATGGATAACATGAAAGAATCAAAGAAATGTATGCCTTATACAATATCTTGCTCACTGTAC-GGTATTTTAAGCAATTCTAATTGTGAACTGTACCTACATACATCTCTTATCTCTGTGGTTTTGTTGAACTGTATCTCGTATACCAAGTATCGTAAGCAATTCTAATT</genome_strand>
        <mrna_strand>TCAATAGCTTAGCAAGAAGAAACTTCACATGTGATTCAAGCAAAAAATACAGCGTCACAGATTTGAATTACCCTTCCTTTGCTGTTTCATTCCCTG-C-TGA-TACCGGTTCAAACACAATCAAGTACAGCCGGACACTGACTAATGTTGGACCAGCTGGAACATACAAAGTTACTGTTTCTTCCCCTAATAGTTCAGTGAAAATTATAGTTGAGCCTGAAACAGTGAGTTTCACTCAGATTAATGAGAAGAAATCCTATACTGTGAGTTTTACTGCTCCATCAAAGTCCTCATCTACGGATGTATTCGGTAGAATTGAGTGGTCAGATGGGAAGCATGTGGTTAGTAGTCCAGTTGCAATATCATGGTCATGAA-GACAT--AG-C-TA---ATAGCTTCTGTTTATTTTATGTATAAGTTCATGGTTTTCTGCTTTTTAAGTTTCATTCCAGCACAAAAGTTGGTAGCTGGTTTCAAGATTTTTTTATGGATAACATGAAAGAATCAAAGAAATGTATGCCTTGTACAATATCTTGCTCACTGTACAG....................................................................TGT-TGTTTTATACCAAGTATTGTAAGCAATTCTAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E699872" ref_strand="+" ref_description="SGN-E699872 [FA11BG10]">
      <seq>aaacgccgatgattacctcaatttcatgtgtgcattgaaatacactccatcacaaatcaacagcttagcgagaagaaacttcacgtgtgattcaagcaaaacatacagcgtcacagatttgaattacccttcatttgctgtttcattcgttgccgggagtgacggttcaaacacaatcaagtacagccggacattgactaatgttggaccggctggaacatacaaagttacagtttcttccccaaatagttcagtgaaaattatagttgagcctgaaacattgagtttcactcagattaatgagaagaaatcgtatacagtgagttttactgctccatcaaagtcctcagctacggatgtattcggtagaattgagtggtcagatgggaagcatgtggttagtagtccagttgcaatttcttggtcatgaataatatgaagacatagctatagcttctgttaattttatgtataagttgatgtttttctgcttttaagtttcattccagcacaaaagtttgtagctggtctcaagatttttttatggataacatgaaagaatcaaagaaatgtatgccttatacaatatcttgctcactgtacggtattttaagcaattctaattgtgaactgtaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="104217" stop="102983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103917" g_stop="103286" g_length="632"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="632" r_length="632" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="635" polyA_stop="650"/>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E699872" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699872" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103917" e_stop="103286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACGCCGATGATTACCTCAATTTCATGTGTGCATTGAAATACACTCCATCACAAATCAACAGCTTAGCGAGAAGAAACTTCACGTGTGATTCAAGCAAAACATACAGCGTCACAGATTTGAATTACCCTTCATTTGCTGTTTCATTCGTTGCCGGGAGTGACGGTTCAAACACAATCAAGTACAGCCGGACATTGACTAATGTTGGACCGGCTGGAACATACAAAGTTACAGTTTCTTCCCCAAATAGTTCAGTGAAAATTATAGTTGAGCCTGAAACATTGAGTTTCACTCAGATTAATGAGAAGAAATCGTATACAGTGAGTTTTACTGCTCCATCAAAGTCCTCAGCTACGGATGTATTCGGTAGAATTGAGTGGTCAGATGGGAAGCATGTGGTTAGTAGTCCAGTTGCAATTTCTTGGTCATGAATAATATGAAGACATAGCTATAGCTTCTGTTAATTTTATGTATAAGTTGATGTTTTTCTGCTTTTAAGTTTCATTCCAGCACAAAAGTTTGTAGCTGGTCTCAAGATTTTTTTATGGATAACATGAAAGAATCAAAGAAATGTATGCCTTATACAATATCTTGCTCACTGTACGGTATTTTAAGCAATTCTAATTGTGAACT</genome_strand>
        <mrna_strand>AAACGCCGATGATTACCTCAATTTCATGTGTGCATTGAAATACACTCCATCACAAATCAACAGCTTAGCGAGAAGAAACTTCACGTGTGATTCAAGCAAAACATACAGCGTCACAGATTTGAATTACCCTTCATTTGCTGTTTCATTCGTTGCCGGGAGTGACGGTTCAAACACAATCAAGTACAGCCGGACATTGACTAATGTTGGACCGGCTGGAACATACAAAGTTACAGTTTCTTCCCCAAATAGTTCAGTGAAAATTATAGTTGAGCCTGAAACATTGAGTTTCACTCAGATTAATGAGAAGAAATCGTATACAGTGAGTTTTACTGCTCCATCAAAGTCCTCAGCTACGGATGTATTCGGTAGAATTGAGTGGTCAGATGGGAAGCATGTGGTTAGTAGTCCAGTTGCAATTTCTTGGTCATGAATAATATGAAGACATAGCTATAGCTTCTGTTAATTTTATGTATAAGTTGATGTTTTTCTGCTTTTAAGTTTCATTCCAGCACAAAAGTTTGTAGCTGGTCTCAAGATTTTTTTATGGATAACATGAAAGAATCAAAGAAATGTATGCCTTATACAATATCTTGCTCACTGTACGGTATTTTAAGCAATTCTAATTGTGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E746436" ref_strand="+" ref_description="SGN-E746436 [GI|47105018]">
      <seq>gatccactccctcttattaatgcagcagtccaagcgaaaaattaatcaaaaatgtctacatacacactactagttgttgtacttgtgtgcctatgtcacatgtctgtggcaatggtggagaagaaaacatacatcattcacatggctaaatcacaaatgccagcaatatttgatgatcatactcactggtatgacgcgtccctcaaatccgtctctgaatcagcagagatgatctatgtttataaaaacgttgttcatggttttgcagcaaggcttacagctcgacaagctgaatccttagagacccaacctgggattctctctgttttgcctgagctgatataccaactccacactactcggacacctctttttttgggacttgatagaagtgttaatatctttcctgagtccgatgctatgagtgatgtcattgtcggagtactcgatacaggggtttggccggagagaaagagctttgacgatactggatttggacctgtaccagattcgtggaaaggtgagtgtgagtccagcaacaacttcagttctgccatgtgtaacagaaagcttgttggagcgaggtatttttctaggggttatgaaactactcttggaccaattgatgagtccaaggagtctaaatctcctagggatgatgatggacatggaacacacactgcttcgacagcagctggttcagttgttcagggtgctagcctttttggttatgcttcaggaactgctcgtggaatggcctatcgtgccagagttgccatgtacaaagtttgctggcttgggggatgttttaactctgacatattggcagggatggacaaagccattgatgataaagttgatgtgctttcattatcacttggtggaagcacaccagattactacaaagatagcattgcaattggagcttttgctgctatggagaagggtattttggtttcttgctctgctggaaatgctggacctaatcaattcagtttggccaaccaagcaccttggatcaccacagtcggtgctggaacaattgaccgtgattttccagcatatgtaagccttggcaatggtaaaaatttctccggcgtttcactttacgcgggtgattcattacttaataaaatgcttcccttggtgtatgctggtaatgccagcaatgtaaccagtggaaatctctgtatgatgggtaccttaattcctgagaaagttaaaggaaaaattgtgctgtgtgacagagggattagcgctcgagtccaaaagggttttgtggtaaaagaggctggtggagccggcatggttttggctaacaccgcagcaaatggggaggaactagtggctgacgcccatttacttccagcggcggcggtgggtcaaaaagccggtgatgtaatcaagaaatatttattctcagatcctaatccaacggccgaaattctttttggaggaacaaaagtagacatcgaaccgtcaccggttgtcgcagcgttcagttctagaggcccaaattcaatcaccccggagatactcaaaccggatattatcgcgcccggtgtaaacattctggccggttggaccggagccgtcggcccgacggggatggcagaggacgatagacgggtcgagttcaacattatctcaggcacatccatgtcgtgtccacacgtgagcggcttggcggctttgataaaaggagtccacccagaatggagccccgccgccattcgttcggcgctcatgacctccgcttacaccgtctacaagaacggcggagcactagtagatgtcgccaccggaaaaccatctacacctttcgaccacggcgctggacacgtggatcccgtttcggcagtgaacccaggtcttgtttacgacataaacgccgatgattacctcaatttcatgtgtgcattgaaatacactccatcacaaatcaacagcttagcgagaagaaacttcacgtgtgattcaagcaaaacatacagcgtcacagatttgaattacccttcatttgctgtttcattcgttgccgggagtgacggttcaaacacaatcaagtacagccggacattgactaatgttggaccggctggaacatacaaagttacagtttcttccccaaatagttcagtgaaaattatagttgagcctgaaacattgagtttcactcagattaatgagaagaaatcgtatacagtgagttttactgctccatcaaagtcctcagctacggatgtattcggtagaattgagtggtcagatgggaagcatgtggttagtagtccagttgcaatttcttggtcatgaataatatgaagacatagctatagcttctgttaattttatgtataagttgatgtttttctgcttttaagtttcattccagcacaaaagtttgtagctggtctcaagatttttttatggataacatgaaagaatcaaagaaatgtatgccttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="106102" stop="87231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105803" g_stop="103323" g_length="2481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="2481" r_length="2481" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E746436" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>2481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105803" e_stop="103323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCCACTCCCTCTTATTAATGCAGCAGTCCAAGCGAAAAATTAATCAAAAATGTCTACATACACACTACTAGTTGTTGTACTTGTGTGCCTATGTCACATGTCTGTGGCAATGGTGGAGAAGAAAACATACATCATTCACATGGCTAAATCACAAATGCCAGCAATATTTGATGATCATACTCACTGGTATGACGCGTCCCTCAAATCCGTCTCTGAATCAGCAGAGATGATCTATGTTTATAAAAACGTTGTTCATGGTTTTGCAGCAAGGCTTACAGCTCGACAAGCTGAATCCTTAGAGACCCAACCTGGGATTCTCTCTGTTTTGCCTGAGCTGATATACCAACTCCACACTACTCGGACACCTCTTTTTTTGGGACTTGATAGAAGTGTTAATATCTTTCCTGAGTCCGATGCTATGAGTGATGTCATTGTCGGAGTACTCGATACAGGGGTTTGGCCGGAGAGAAAGAGCTTTGACGATACTGGATTTGGACCTGTACCAGATTCGTGGAAAGGTGAGTGTGAGTCCAGCAACAACTTCAGTTCTGCCATGTGTAACAGAAAGCTTGTTGGAGCGAGGTATTTTTCTAGGGGTTATGAAACTACTCTTGGACCAATTGATGAGTCCAAGGAGTCTAAATCTCCTAGGGATGATGATGGACATGGAACACACACTGCTTCGACAGCAGCTGGTTCAGTTGTTCAGGGTGCTAGCCTTTTTGGTTATGCTTCAGGAACTGCTCGTGGAATGGCCTATCGTGCCAGAGTTGCCATGTACAAAGTTTGCTGGCTTGGGGGATGTTTTAACTCTGACATATTGGCAGGGATGGACAAAGCCATTGATGATAAAGTTGATGTGCTTTCATTATCACTTGGTGGAAGCACACCAGATTACTACAAAGATAGCATTGCAATTGGAGCTTTTGCTGCTATGGAGAAGGGTATTTTGGTTTCTTGCTCTGCTGGAAATGCTGGACCTAATCAATTCAGTTTGGCCAACCAAGCACCTTGGATCACCACAGTCGGTGCTGGAACAATTGACCGTGATTTTCCAGCATATGTAAGCCTTGGCAATGGTAAAAATTTCTCCGGCGTTTCACTTTACGCGGGTGATTCATTACTTAATAAAATGCTTCCCTTGGTGTATGCTGGTAATGCCAGCAATGTAACCAGTGGAAATCTCTGTATGATGGGTACCTTAATTCCTGAGAAAGTTAAAGGAAAAATTGTGCTGTGTGACAGAGGGATTAGCGCTCGAGTCCAAAAGGGTTTTGTGGTAAAAGAGGCTGGTGGAGCCGGCATGGTTTTGGCTAACACCGCAGCAAATGGGGAGGAACTAGTGGCTGACGCCCATTTACTTCCAGCGGCGGCGGTGGGTCAAAAAGCCGGTGATGTAATCAAGAAATATTTATTCTCAGATCCTAATCCAACGGCCGAAATTCTTTTTGGAGGAACAAAAGTAGACATCGAACCGTCACCGGTTGTCGCAGCGTTCAGTTCTAGAGGCCCAAATTCAATCACCCCGGAGATACTCAAACCGGATATTATCGCGCCCGGTGTAAACATTCTGGCCGGTTGGACCGGAGCCGTCGGCCCGACGGGGATGGCAGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGCGGCTTGGCGGCTTTGATAAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGACCTCCGCTTACACCGTCTACAAGAACGGCGGAGCACTAGTAGATGTCGCCACCGGAAAACCATCTACACCTTTCGACCACGGCGCTGGACACGTGGATCCCGTTTCGGCAGTGAACCCAGGTCTTGTTTACGACATAAACGCCGATGATTACCTCAATTTCATGTGTGCATTGAAATACACTCCATCACAAATCAACAGCTTAGCGAGAAGAAACTTCACGTGTGATTCAAGCAAAACATACAGCGTCACAGATTTGAATTACCCTTCATTTGCTGTTTCATTCGTTGCCGGGAGTGACGGTTCAAACACAATCAAGTACAGCCGGACATTGACTAATGTTGGACCGGCTGGAACATACAAAGTTACAGTTTCTTCCCCAAATAGTTCAGTGAAAATTATAGTTGAGCCTGAAACATTGAGTTTCACTCAGATTAATGAGAAGAAATCGTATACAGTGAGTTTTACTGCTCCATCAAAGTCCTCAGCTACGGATGTATTCGGTAGAATTGAGTGGTCAGATGGGAAGCATGTGGTTAGTAGTCCAGTTGCAATTTCTTGGTCATGAATAATATGAAGACATAGCTATAGCTTCTGTTAATTTTATGTATAAGTTGATGTTTTTCTGCTTTTAAGTTTCATTCCAGCACAAAAGTTTGTAGCTGGTCTCAAGATTTTTTTATGGATAACATGAAAGAATCAAAGAAATGTATGCCTTATACAATATCTTGCT</genome_strand>
        <mrna_strand>GATCCACTCCCTCTTATTAATGCAGCAGTCCAAGCGAAAAATTAATCAAAAATGTCTACATACACACTACTAGTTGTTGTACTTGTGTGCCTATGTCACATGTCTGTGGCAATGGTGGAGAAGAAAACATACATCATTCACATGGCTAAATCACAAATGCCAGCAATATTTGATGATCATACTCACTGGTATGACGCGTCCCTCAAATCCGTCTCTGAATCAGCAGAGATGATCTATGTTTATAAAAACGTTGTTCATGGTTTTGCAGCAAGGCTTACAGCTCGACAAGCTGAATCCTTAGAGACCCAACCTGGGATTCTCTCTGTTTTGCCTGAGCTGATATACCAACTCCACACTACTCGGACACCTCTTTTTTTGGGACTTGATAGAAGTGTTAATATCTTTCCTGAGTCCGATGCTATGAGTGATGTCATTGTCGGAGTACTCGATACAGGGGTTTGGCCGGAGAGAAAGAGCTTTGACGATACTGGATTTGGACCTGTACCAGATTCGTGGAAAGGTGAGTGTGAGTCCAGCAACAACTTCAGTTCTGCCATGTGTAACAGAAAGCTTGTTGGAGCGAGGTATTTTTCTAGGGGTTATGAAACTACTCTTGGACCAATTGATGAGTCCAAGGAGTCTAAATCTCCTAGGGATGATGATGGACATGGAACACACACTGCTTCGACAGCAGCTGGTTCAGTTGTTCAGGGTGCTAGCCTTTTTGGTTATGCTTCAGGAACTGCTCGTGGAATGGCCTATCGTGCCAGAGTTGCCATGTACAAAGTTTGCTGGCTTGGGGGATGTTTTAACTCTGACATATTGGCAGGGATGGACAAAGCCATTGATGATAAAGTTGATGTGCTTTCATTATCACTTGGTGGAAGCACACCAGATTACTACAAAGATAGCATTGCAATTGGAGCTTTTGCTGCTATGGAGAAGGGTATTTTGGTTTCTTGCTCTGCTGGAAATGCTGGACCTAATCAATTCAGTTTGGCCAACCAAGCACCTTGGATCACCACAGTCGGTGCTGGAACAATTGACCGTGATTTTCCAGCATATGTAAGCCTTGGCAATGGTAAAAATTTCTCCGGCGTTTCACTTTACGCGGGTGATTCATTACTTAATAAAATGCTTCCCTTGGTGTATGCTGGTAATGCCAGCAATGTAACCAGTGGAAATCTCTGTATGATGGGTACCTTAATTCCTGAGAAAGTTAAAGGAAAAATTGTGCTGTGTGACAGAGGGATTAGCGCTCGAGTCCAAAAGGGTTTTGTGGTAAAAGAGGCTGGTGGAGCCGGCATGGTTTTGGCTAACACCGCAGCAAATGGGGAGGAACTAGTGGCTGACGCCCATTTACTTCCAGCGGCGGCGGTGGGTCAAAAAGCCGGTGATGTAATCAAGAAATATTTATTCTCAGATCCTAATCCAACGGCCGAAATTCTTTTTGGAGGAACAAAAGTAGACATCGAACCGTCACCGGTTGTCGCAGCGTTCAGTTCTAGAGGCCCAAATTCAATCACCCCGGAGATACTCAAACCGGATATTATCGCGCCCGGTGTAAACATTCTGGCCGGTTGGACCGGAGCCGTCGGCCCGACGGGGATGGCAGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGCGGCTTGGCGGCTTTGATAAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGACCTCCGCTTACACCGTCTACAAGAACGGCGGAGCACTAGTAGATGTCGCCACCGGAAAACCATCTACACCTTTCGACCACGGCGCTGGACACGTGGATCCCGTTTCGGCAGTGAACCCAGGTCTTGTTTACGACATAAACGCCGATGATTACCTCAATTTCATGTGTGCATTGAAATACACTCCATCACAAATCAACAGCTTAGCGAGAAGAAACTTCACGTGTGATTCAAGCAAAACATACAGCGTCACAGATTTGAATTACCCTTCATTTGCTGTTTCATTCGTTGCCGGGAGTGACGGTTCAAACACAATCAAGTACAGCCGGACATTGACTAATGTTGGACCGGCTGGAACATACAAAGTTACAGTTTCTTCCCCAAATAGTTCAGTGAAAATTATAGTTGAGCCTGAAACATTGAGTTTCACTCAGATTAATGAGAAGAAATCGTATACAGTGAGTTTTACTGCTCCATCAAAGTCCTCAGCTACGGATGTATTCGGTAGAATTGAGTGGTCAGATGGGAAGCATGTGGTTAGTAGTCCAGTTGCAATTTCTTGGTCATGAATAATATGAAGACATAGCTATAGCTTCTGTTAATTTTATGTATAAGTTGATGTTTTTCTGCTTTTAAGTTTCATTCCAGCACAAAAGTTTGTAGCTGGTCTCAAGATTTTTTTATGGATAACATGAAAGAATCAAAGAAATGTATGCCTTAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E706660" ref_strand="+" ref_description="SGN-E706660 [FA30CC11]">
      <seq>ctcaaaccggatattatcgcgcccggtgtaaacattctggccggttggaccggagccgtcggcccgacggggatggcagaggacgatagacgggtcgagttcaacattatctcaggcacatccatgtcgtgtccacacgtgagcggcttggcggctttgataaaaggagtccacccagaatggagccccgccgccattcgttcggcgctcatgacctccgcttacaccgtctacaagaacggcggagcactagtagatgtcgccaccggaaaaccatctacacctttcgaccacggcgctggacacgtggatcccgtttcggcagtgaacccaggtcttgtttacgacataaacgccgatgattacctcaatttcatgtgtgcattgaaatacactccatcacaaatcaacagcttagcgagaagaaacttcacgtgtgattcaagcaaaacatacagcgtcacagatttgaattacccttcatttgctgtttcattcgttgccgggagtgacggttcaaacacaatcaagtacagccggacattgactaatgttggaccggctggaacatacaaagttacagtttcttccccaaatagttcagtgaaaattatagttgagcctgaaacattgagtttcactcagattaatgagaagaaatcgtatacagtgagttttactgctccatcaaagtcctcagctacggatgtattcggtagaattgagtggtcagatgggaagcatgtggttagtagtccagttgcaatttcttggtcatgaataatatgaagacatagctatagcttctgttaattttatgtataagttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="104567" stop="103136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104267" g_stop="103436" g_length="832"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="832" r_length="832" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E706660" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>832</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706660" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104267" e_stop="103436"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAACCGGATATTATCGCGCCCGGTGTAAACATTCTGGCCGGTTGGACCGGAGCCGTCGGCCCGACGGGGATGGCAGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGCGGCTTGGCGGCTTTGATAAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGACCTCCGCTTACACCGTCTACAAGAACGGCGGAGCACTAGTAGATGTCGCCACCGGAAAACCATCTACACCTTTCGACCACGGCGCTGGACACGTGGATCCCGTTTCGGCAGTGAACCCAGGTCTTGTTTACGACATAAACGCCGATGATTACCTCAATTTCATGTGTGCATTGAAATACACTCCATCACAAATCAACAGCTTAGCGAGAAGAAACTTCACGTGTGATTCAAGCAAAACATACAGCGTCACAGATTTGAATTACCCTTCATTTGCTGTTTCATTCGTTGCCGGGAGTGACGGTTCAAACACAATCAAGTACAGCCGGACATTGACTAATGTTGGACCGGCTGGAACATACAAAGTTACAGTTTCTTCCCCAAATAGTTCAGTGAAAATTATAGTTGAGCCTGAAACATTGAGTTTCACTCAGATTAATGAGAAGAAATCGTATACAGTGAGTTTTACTGCTCCATCAAAGTCCTCAGCTACGGATGTATTCGGTAGAATTGAGTGGTCAGATGGGAAGCATGTGGTTAGTAGTCCAGTTGCAATTTCTTGGTCATGAATAATATGAAGACATAGCTATAGCTTCTGTTAATTTTATGTATAAGTTGATG</genome_strand>
        <mrna_strand>CTCAAACCGGATATTATCGCGCCCGGTGTAAACATTCTGGCCGGTTGGACCGGAGCCGTCGGCCCGACGGGGATGGCAGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGCGGCTTGGCGGCTTTGATAAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGACCTCCGCTTACACCGTCTACAAGAACGGCGGAGCACTAGTAGATGTCGCCACCGGAAAACCATCTACACCTTTCGACCACGGCGCTGGACACGTGGATCCCGTTTCGGCAGTGAACCCAGGTCTTGTTTACGACATAAACGCCGATGATTACCTCAATTTCATGTGTGCATTGAAATACACTCCATCACAAATCAACAGCTTAGCGAGAAGAAACTTCACGTGTGATTCAAGCAAAACATACAGCGTCACAGATTTGAATTACCCTTCATTTGCTGTTTCATTCGTTGCCGGGAGTGACGGTTCAAACACAATCAAGTACAGCCGGACATTGACTAATGTTGGACCGGCTGGAACATACAAAGTTACAGTTTCTTCCCCAAATAGTTCAGTGAAAATTATAGTTGAGCCTGAAACATTGAGTTTCACTCAGATTAATGAGAAGAAATCGTATACAGTGAGTTTTACTGCTCCATCAAAGTCCTCAGCTACGGATGTATTCGGTAGAATTGAGTGGTCAGATGGGAAGCATGTGGTTAGTAGTCCAGTTGCAATTTCTTGGTCATGAATAATATGAAGACATAGCTATAGCTTCTGTTAATTTTATGTATAAGTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E699640" ref_strand="+" ref_description="SGN-E699640 [FA10DB05]">
      <seq>tctttttggaggaacaaaagtagacatcgaaccgtcaccggttgtcgcagcgttcagttctagaggcccaaattcaatcaccccggagatactcaaaccggatattatcgcgcccggtgtaaacattctggccggttggaccggagccgtcggcccgacggggatggcagaggacgatagacgggtcgagttcaacattatctcaggcacatccatgtcgtgtccacacgtgagcggcttggcggctttgataaaaggagtccacccagaatggagccccgccgccattcgttcggcgctcatgacctccgcttacaccgtctacaagaacggcggagcactagtagatgtcgccaccggaaaaccatctacacctttcgaccacggcgctggacacgtggatcccgtttcggcagtgaacccaggtcttgtttacgacataaacgccgatgattacctcaatttcatgtgtgcattgaaatacactccatcacaaatcaacagcttagcgagaagaaacttcacgtgtgattcaagcaaaacatacagcgtcacagatttgaattacccttcatttgctgtttcattcgttgccgggagtgacggttcaaacacaatcaagtacagccggacattgactaatgttggaccggctggaacatacaaagttacagtttcttcccccaaatagttcagtgaaaattatagttgagcctgaaacattgagtttcactcagattaatgagaagaaatcgtatacagtgagttttactgctccatcaaagtcctcagctacggatgtattcggtagaattgagtggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="104658" stop="103237"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104358" g_stop="103537" g_length="822"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="823" r_length="823" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E699640" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>822</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699640" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104358" e_stop="103537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTTGGAGGAACAAAAGTAGACATCGAACCGTCACCGGTTGTCGCAGCGTTCAGTTCTAGAGGCCCAAATTCAATCACCCCGGAGATACTCAAACCGGATATTATCGCGCCCGGTGTAAACATTCTGGCCGGTTGGACCGGAGCCGTCGGCCCGACGGGGATGGCAGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGCGGCTTGGCGGCTTTGATAAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGACCTCCGCTTACACCGTCTACAAGAACGGCGGAGCACTAGTAGATGTCGCCACCGGAAAACCATCTACACCTTTCGACCACGGCGCTGGACACGTGGATCCCGTTTCGGCAGTGAACCCAGGTCTTGTTTACGACATAAACGCCGATGATTACCTCAATTTCATGTGTGCATTGAAATACACTCCATCACAAATCAACAGCTTAGCGAGAAGAAACTTCACGTGTGATTCAAGCAAAACATACAGCGTCACAGATTTGAATTACCCTTCATTTGCTGTTTCATTCGTTGCCGGGAGTGACGGTTCAAACACAATCAAGTACAGCCGGACATTGACTAATGTTGGACCGGCTGGAACATACAAAGTTACAGTTTCTT-CCCCAAATAGTTCAGTGAAAATTATAGTTGAGCCTGAAACATTGAGTTTCACTCAGATTAATGAGAAGAAATCGTATACAGTGAGTTTTACTGCTCCATCAAAGTCCTCAGCTACGGATGTATTCGGTAGAATTGAGTGGTC</genome_strand>
        <mrna_strand>TCTTTTTGGAGGAACAAAAGTAGACATCGAACCGTCACCGGTTGTCGCAGCGTTCAGTTCTAGAGGCCCAAATTCAATCACCCCGGAGATACTCAAACCGGATATTATCGCGCCCGGTGTAAACATTCTGGCCGGTTGGACCGGAGCCGTCGGCCCGACGGGGATGGCAGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGCGGCTTGGCGGCTTTGATAAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGACCTCCGCTTACACCGTCTACAAGAACGGCGGAGCACTAGTAGATGTCGCCACCGGAAAACCATCTACACCTTTCGACCACGGCGCTGGACACGTGGATCCCGTTTCGGCAGTGAACCCAGGTCTTGTTTACGACATAAACGCCGATGATTACCTCAATTTCATGTGTGCATTGAAATACACTCCATCACAAATCAACAGCTTAGCGAGAAGAAACTTCACGTGTGATTCAAGCAAAACATACAGCGTCACAGATTTGAATTACCCTTCATTTGCTGTTTCATTCGTTGCCGGGAGTGACGGTTCAAACACAATCAAGTACAGCCGGACATTGACTAATGTTGGACCGGCTGGAACATACAAAGTTACAGTTTCTTCCCCCAAATAGTTCAGTGAAAATTATAGTTGAGCCTGAAACATTGAGTTTCACTCAGATTAATGAGAAGAAATCGTATACAGTGAGTTTTACTGCTCCATCAAAGTCCTCAGCTACGGATGTATTCGGTAGAATTGAGTGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E735762" ref_strand="+" ref_description="SGN-E735762 [LC02DF09]">
      <seq>cgtatacatcgaaccgtcaccggttgtcgcagcgttcagttctagaggcccaaattcaatcaccccggagatactcaaaccggatattatcgcgcccggtgtaaacattctggccggttggaccggagccgtcggcccgacggggatggcagaggacgatagacgggtcgagttcaacattatctcaggcacatccatgtcgtgtccacacgtgagcggcttggcggctttgataaaaggagtccacccagaatggagccccgccgccattcgttcggcgctcatgacctccgcttacaccgtctacaagaacggcggagcactagtagatgtcgccaccggaaaaccatctacacctttcgaccacggcgctggacacgtggatcccgtttcggcagtgaacccaggtcttgtttacgacataaacgccgatgattacctcaatttcatgtgtgcattgaaatacactccatcacaaatcaacagcttagcgagaagaaacttcacgtgtgattcaagcaaaacatacagcgtcacagatttgaattacccttcatttgctgtttcattcgttgccgggagtgacggttcaaacacaatcaagtacagccggacattgactaatgttggaccggctggaacatacaaagttacagtttcttccccaaatagttcagtgaaaattatagttgagcctgaaacattgagtttcactcagattaatgagaagaaatcgtatacagtgagttttactgctccatcaaagtcctcagctacggatgtattcggtagaattgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="104639" stop="103240"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104340" g_stop="103540" g_length="801"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="801" r_length="801" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E735762" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104340" e_stop="103540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAGACATCGAACCGTCACCGGTTGTCGCAGCGTTCAGTTCTAGAGGCCCAAATTCAATCACCCCGGAGATACTCAAACCGGATATTATCGCGCCCGGTGTAAACATTCTGGCCGGTTGGACCGGAGCCGTCGGCCCGACGGGGATGGCAGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGCGGCTTGGCGGCTTTGATAAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGACCTCCGCTTACACCGTCTACAAGAACGGCGGAGCACTAGTAGATGTCGCCACCGGAAAACCATCTACACCTTTCGACCACGGCGCTGGACACGTGGATCCCGTTTCGGCAGTGAACCCAGGTCTTGTTTACGACATAAACGCCGATGATTACCTCAATTTCATGTGTGCATTGAAATACACTCCATCACAAATCAACAGCTTAGCGAGAAGAAACTTCACGTGTGATTCAAGCAAAACATACAGCGTCACAGATTTGAATTACCCTTCATTTGCTGTTTCATTCGTTGCCGGGAGTGACGGTTCAAACACAATCAAGTACAGCCGGACATTGACTAATGTTGGACCGGCTGGAACATACAAAGTTACAGTTTCTTCCCCAAATAGTTCAGTGAAAATTATAGTTGAGCCTGAAACATTGAGTTTCACTCAGATTAATGAGAAGAAATCGTATACAGTGAGTTTTACTGCTCCATCAAAGTCCTCAGCTACGGATGTATTCGGTAGAATTGAGTG</genome_strand>
        <mrna_strand>CGTATACATCGAACCGTCACCGGTTGTCGCAGCGTTCAGTTCTAGAGGCCCAAATTCAATCACCCCGGAGATACTCAAACCGGATATTATCGCGCCCGGTGTAAACATTCTGGCCGGTTGGACCGGAGCCGTCGGCCCGACGGGGATGGCAGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGCGGCTTGGCGGCTTTGATAAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGACCTCCGCTTACACCGTCTACAAGAACGGCGGAGCACTAGTAGATGTCGCCACCGGAAAACCATCTACACCTTTCGACCACGGCGCTGGACACGTGGATCCCGTTTCGGCAGTGAACCCAGGTCTTGTTTACGACATAAACGCCGATGATTACCTCAATTTCATGTGTGCATTGAAATACACTCCATCACAAATCAACAGCTTAGCGAGAAGAAACTTCACGTGTGATTCAAGCAAAACATACAGCGTCACAGATTTGAATTACCCTTCATTTGCTGTTTCATTCGTTGCCGGGAGTGACGGTTCAAACACAATCAAGTACAGCCGGACATTGACTAATGTTGGACCGGCTGGAACATACAAAGTTACAGTTTCTTCCCCAAATAGTTCAGTGAAAATTATAGTTGAGCCTGAAACATTGAGTTTCACTCAGATTAATGAGAAGAAATCGTATACAGTGAGTTTTACTGCTCCATCAAAGTCCTCAGCTACGGATGTATTCGGTAGAATTGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E427838" ref_strand="+" ref_description="SGN-E427838 [STM-49-M15]">
      <seq>gagctagtggctgacgcccatttacttccagcggcggcggtgggtctaatagccggcgatgcagtcaagaaatatttattctccgatcctaatccaacggccgaaattctttttggaggaacaaaggtaggaatccaaccatcaccggttgttgcagcgttcagttccagaggcccaaattcaatcaccccggagatactcaaaccggatattatcgcgcccggtgtaaacattctggccggttggaccggagccgtcggcccgacggggatggctgaggacgatagacgggtcgagttcaacattatctcaggcacatccatgtcgtgtccacatgtgagtggcttagcggctttggttaaaggagtccacccagaatggagcccggccgccattcgttcggcgctcatgaccaccgcttacaccgtctacaagaacggcggagcactcctagatatcgccacgggaaagccatctacacctttcgatcacggcgctggacacgtggatcccgtttcggcggtgaacccaggtcttgtttacgacataaacgccgatgattacctcgatttcatgtgtgcattgaaatacactccatcacaaatcaatagcttagcaagaagaaacttcacatgtgattcaagcaaaaaatacagcgtcacagatttgaattacccttcctttgctgtttcattccctgctgataccggttcaaacacaatcaagtacagccggacactgactaatgttggaccagctggaacatacaaagttactgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="104765" stop="103384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104465" g_stop="103684" g_length="782"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="779" r_length="779" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E427838" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>782</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E427838" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104465" e_stop="103684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTAGTGGCTGACGCCCATTTACTTCCAGCGGCGGCGGTGGGTCAAAAAGCCGGTGATGTAATCAAGAAATATTTATTCTCAGATCCTAATCCAACGGCCGAAATTCTTTTTGGAGGAACAAAAGTAGACATCGAACCGTCACCGGTTGTCGCAGCGTTCAGTTCTAGAGGCCCAAATTCAATCACCCCGGAGATACTCAAACCGGATATTATCGCGCCCGGTGTAAACATTCTGGCCGGTTGGACCGGAGCCGTCGGCCCGACGGGGATGGCAGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGCGGCTTGGCGGCTTTGATAAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGACCTCCGCTTACACCGTCTACAAGAACGGCGGAGCACTAGTAGATGTCGCCACCGGAAAACCATCTACACCTTTCGACCACGGCGCTGGACACGTGGATCCCGTTTCGGCAGTGAACCCAGGTCTTGTTTACGACATAAACGCCGATGATTACCTCAATTTCATGTGTGCATTGAAATACACTCCATCACAAATCAACAGCTTAGCGAGAAGAAACTTCACGTGTGATTCAAGCAAAACATACAGCGTCACAGATTTGAATTACCCTTCATTTGCTGTTTCATTCGTTGCCGGGAGTGACGGTTCAAACACAATCAAGTACAGCCGGACATTGACTAATGTTGGACCGGCTGGAACATACAAAGTTACAGT</genome_strand>
        <mrna_strand>GAGCTAGTGGCTGACGCCCATTTACTTCCAGCGGCGGCGGTGGGTCTAATAGCCGGCGATGCAGTCAAGAAATATTTATTCTCCGATCCTAATCCAACGGCCGAAATTCTTTTTGGAGGAACAAAGGTAGGAATCCAACCATCACCGGTTGTTGCAGCGTTCAGTTCCAGAGGCCCAAATTCAATCACCCCGGAGATACTCAAACCGGATATTATCGCGCCCGGTGTAAACATTCTGGCCGGTTGGACCGGAGCCGTCGGCCCGACGGGGATGGCTGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACATGTGAGTGGCTTAGCGGCTTTGGTTAAAGGAGTCCACCCAGAATGGAGCCCGGCCGCCATTCGTTCGGCGCTCATGACCACCGCTTACACCGTCTACAAGAACGGCGGAGCACTCCTAGATATCGCCACGGGAAAGCCATCTACACCTTTCGATCACGGCGCTGGACACGTGGATCCCGTTTCGGCGGTGAACCCAGGTCTTGTTTACGACATAAACGCCGATGATTACCTCGATTTCATGTGTGCATTGAAATACACTCCATCACAAATCAATAGCTTAGCAAGAAGAAACTTCACATGTGATTCAAGCAAAAAATACAGCGTCACAGATTTGAATTACCCTTCCTTTGCTGTTTCATTCCCTG-C-TGA-TACCGGTTCAAACACAATCAAGTACAGCCGGACACTGACTAATGTTGGACCAGCTGGAACATACAAAGTTACTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E477864" ref_strand="+" ref_description="SGN-E477864 [cSTD-2-C3]">
      <seq>gagctagtggctgacgcccatttacttccagcggcggcggtgggtctaatagccggcgatgcagtcaagaaatatttattctccgatcctaatccaacggccgaaattctttttggaggaacaaaggtaggaatccaaccatcaccggttgttgcagcgttcagttccagaggcccaaattcaatcaccccggagatactcaaaccggatattatcgcgcccggtgtaaacattctggccggttggaccggagccgtcggcccgacggggatggctgaggacgatagacgggtcgagttcaacattatctcaggcacatccatgtcgtgtccacatgtgagtggcttagcggctttggttaaaggagtccacccagaatggagcccggccgccattcgttcggcgctcatgaccaccgcttacaccgtctacaagaacggcggagcactcctagatatcgccacgggaaagccatctacacctttcgatcacggcgctggacacgtggatcccgtttcggcggtgaacccaggtcttgtttacgacataaacgccgatgattacctcgatttcatgtgtgcattgaaatacactccatcacaaatcaatagcttagcaagaagaaacttcacatgtgattcaagcaaaaaatacagcgtcacagatttgaattacccttcctttgctgtttcattccctgctgataccggttcaaacacaatcaagtacagccggacactgactaatgttggaccagctggaacataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="104765" stop="103394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104465" g_stop="103694" g_length="772"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="769" r_length="769" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E477864" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E477864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104465" e_stop="103694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTAGTGGCTGACGCCCATTTACTTCCAGCGGCGGCGGTGGGTCAAAAAGCCGGTGATGTAATCAAGAAATATTTATTCTCAGATCCTAATCCAACGGCCGAAATTCTTTTTGGAGGAACAAAAGTAGACATCGAACCGTCACCGGTTGTCGCAGCGTTCAGTTCTAGAGGCCCAAATTCAATCACCCCGGAGATACTCAAACCGGATATTATCGCGCCCGGTGTAAACATTCTGGCCGGTTGGACCGGAGCCGTCGGCCCGACGGGGATGGCAGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGCGGCTTGGCGGCTTTGATAAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGACCTCCGCTTACACCGTCTACAAGAACGGCGGAGCACTAGTAGATGTCGCCACCGGAAAACCATCTACACCTTTCGACCACGGCGCTGGACACGTGGATCCCGTTTCGGCAGTGAACCCAGGTCTTGTTTACGACATAAACGCCGATGATTACCTCAATTTCATGTGTGCATTGAAATACACTCCATCACAAATCAACAGCTTAGCGAGAAGAAACTTCACGTGTGATTCAAGCAAAACATACAGCGTCACAGATTTGAATTACCCTTCATTTGCTGTTTCATTCGTTGCCGGGAGTGACGGTTCAAACACAATCAAGTACAGCCGGACATTGACTAATGTTGGACCGGCTGGAACATACA</genome_strand>
        <mrna_strand>GAGCTAGTGGCTGACGCCCATTTACTTCCAGCGGCGGCGGTGGGTCTAATAGCCGGCGATGCAGTCAAGAAATATTTATTCTCCGATCCTAATCCAACGGCCGAAATTCTTTTTGGAGGAACAAAGGTAGGAATCCAACCATCACCGGTTGTTGCAGCGTTCAGTTCCAGAGGCCCAAATTCAATCACCCCGGAGATACTCAAACCGGATATTATCGCGCCCGGTGTAAACATTCTGGCCGGTTGGACCGGAGCCGTCGGCCCGACGGGGATGGCTGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACATGTGAGTGGCTTAGCGGCTTTGGTTAAAGGAGTCCACCCAGAATGGAGCCCGGCCGCCATTCGTTCGGCGCTCATGACCACCGCTTACACCGTCTACAAGAACGGCGGAGCACTCCTAGATATCGCCACGGGAAAGCCATCTACACCTTTCGATCACGGCGCTGGACACGTGGATCCCGTTTCGGCGGTGAACCCAGGTCTTGTTTACGACATAAACGCCGATGATTACCTCGATTTCATGTGTGCATTGAAATACACTCCATCACAAATCAATAGCTTAGCAAGAAGAAACTTCACATGTGATTCAAGCAAAAAATACAGCGTCACAGATTTGAATTACCCTTCCTTTGCTGTTTCATTCCCTG-C-TGA-TACCGGTTCAAACACAATCAAGTACAGCCGGACACTGACTAATGTTGGACCAGCTGGAACATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728730" ref_strand="+" ref_description="SGN-E728730 [LA18DA12]">
      <seq>aagggttttgtggtaaaagaggctggtggagccggcatggttttggctaacaccgcagcaaatggggaggaactagtgggggacgcccatttacttccagcggcggcggtgggtcaaaaagccggtgatgtaatcaagaaatatttattctcagatcctaatccaacggccgaaattctttttggaggaacaaaagtagacatcgaaccgtcaccggttgtcgcagcgttcagttctagaggcccaaattcaatcaccccggagatactcaaaccggatattatcgcgcccggtgtaaacattctggccggttggaccggagccgtcggcccgacggggatggcagaggacgatagacgggtcgagttcaacattatctcaggcacatccatgtcgtgtccacacgtgagcggcttggcggctttgataaaaggagtccacccagaatggagccccgccgccattcgttcggcgctcatgacctccgcttacaccgtctacaagaacggcggagcactagtagatgtcgccaccggaaaaccatctacacctttcgaccacggcgctggacacgtggatcccgtttcggcagtgaacccaggtcttgtttacgacataaacgccgatgattacctcaatttcatgtgtgcattgaaatacactccatcacaaatcaacagcttagcgagaagaaacttcacgtgtgattcaagcaaaacatacagcgtcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="104834" stop="103504"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104534" g_stop="103804" g_length="731"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="731" r_length="731" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E728730" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728730" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104534" e_stop="103804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGGTTTTGTGGTAAAAGAGGCTGGTGGAGCCGGCATGGTTTTGGCTAACACCGCAGCAAATGGGGAGGAACTAGTGGCTGACGCCCATTTACTTCCAGCGGCGGCGGTGGGTCAAAAAGCCGGTGATGTAATCAAGAAATATTTATTCTCAGATCCTAATCCAACGGCCGAAATTCTTTTTGGAGGAACAAAAGTAGACATCGAACCGTCACCGGTTGTCGCAGCGTTCAGTTCTAGAGGCCCAAATTCAATCACCCCGGAGATACTCAAACCGGATATTATCGCGCCCGGTGTAAACATTCTGGCCGGTTGGACCGGAGCCGTCGGCCCGACGGGGATGGCAGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGCGGCTTGGCGGCTTTGATAAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGACCTCCGCTTACACCGTCTACAAGAACGGCGGAGCACTAGTAGATGTCGCCACCGGAAAACCATCTACACCTTTCGACCACGGCGCTGGACACGTGGATCCCGTTTCGGCAGTGAACCCAGGTCTTGTTTACGACATAAACGCCGATGATTACCTCAATTTCATGTGTGCATTGAAATACACTCCATCACAAATCAACAGCTTAGCGAGAAGAAACTTCACGTGTGATTCAAGCAAAACATACAGCGTCAC</genome_strand>
        <mrna_strand>AAGGGTTTTGTGGTAAAAGAGGCTGGTGGAGCCGGCATGGTTTTGGCTAACACCGCAGCAAATGGGGAGGAACTAGTGGGGGACGCCCATTTACTTCCAGCGGCGGCGGTGGGTCAAAAAGCCGGTGATGTAATCAAGAAATATTTATTCTCAGATCCTAATCCAACGGCCGAAATTCTTTTTGGAGGAACAAAAGTAGACATCGAACCGTCACCGGTTGTCGCAGCGTTCAGTTCTAGAGGCCCAAATTCAATCACCCCGGAGATACTCAAACCGGATATTATCGCGCCCGGTGTAAACATTCTGGCCGGTTGGACCGGAGCCGTCGGCCCGACGGGGATGGCAGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGCGGCTTGGCGGCTTTGATAAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGACCTCCGCTTACACCGTCTACAAGAACGGCGGAGCACTAGTAGATGTCGCCACCGGAAAACCATCTACACCTTTCGACCACGGCGCTGGACACGTGGATCCCGTTTCGGCAGTGAACCCAGGTCTTGTTTACGACATAAACGCCGATGATTACCTCAATTTCATGTGTGCATTGAAATACACTCCATCACAAATCAACAGCTTAGCGAGAAGAAACTTCACGTGTGATTCAAGCAAAACATACAGCGTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E725866" ref_strand="+" ref_description="SGN-E725866 [LA08CC06]">
      <seq>ggaaatctctgtatgatgggtaccttaattcctgagaaagttaaaggaaaaattgtgctgtgtgacagagggattagcgctcgagtccaaaagggttttgtggtaaaagaggctggtggagccggcatggttttggctaacaccgcaccaaatggggaggaactagtggctgacgcccatttacttccagcggcggcggtgggtcaaaaagccggtgatgtaatcaagaaatatttattctcagatcctaatccaacggccgaaattctttttggaggaacaaaagtagacatcgaaccgtcaccggttgtcgcagcgttcagttctagaggcccaaattcaatcaccccggagatactcagaccggatattatcgcgcccggtgtaaacattctggccggttggaccggagccgtcggcccgaccgggatggcagaggacgatagacgggtcgagttcaacattatctcaggcacatccatgtcgtgtccacacgtgagcggcttggcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="104924" stop="103815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104624" g_stop="104115" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="510" r_length="510" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E725866" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725866" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104624" e_stop="104115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAATCTCTGTATGATGGGTACCTTAATTCCTGAGAAAGTTAAAGGAAAAATTGTGCTGTGTGACAGAGGGATTAGCGCTCGAGTCCAAAAGGGTTTTGTGGTAAAAGAGGCTGGTGGAGCCGGCATGGTTTTGGCTAACACCGCAGCAAATGGGGAGGAACTAGTGGCTGACGCCCATTTACTTCCAGCGGCGGCGGTGGGTCAAAAAGCCGGTGATGTAATCAAGAAATATTTATTCTCAGATCCTAATCCAACGGCCGAAATTCTTTTTGGAGGAACAAAAGTAGACATCGAACCGTCACCGGTTGTCGCAGCGTTCAGTTCTAGAGGCCCAAATTCAATCACCCCGGAGATACTCAAACCGGATATTATCGCGCCCGGTGTAAACATTCTGGCCGGTTGGACCGGAGCCGTCGGCCCGACGGGGATGGCAGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGCGGCTTGGCG</genome_strand>
        <mrna_strand>GGAAATCTCTGTATGATGGGTACCTTAATTCCTGAGAAAGTTAAAGGAAAAATTGTGCTGTGTGACAGAGGGATTAGCGCTCGAGTCCAAAAGGGTTTTGTGGTAAAAGAGGCTGGTGGAGCCGGCATGGTTTTGGCTAACACCGCACCAAATGGGGAGGAACTAGTGGCTGACGCCCATTTACTTCCAGCGGCGGCGGTGGGTCAAAAAGCCGGTGATGTAATCAAGAAATATTTATTCTCAGATCCTAATCCAACGGCCGAAATTCTTTTTGGAGGAACAAAAGTAGACATCGAACCGTCACCGGTTGTCGCAGCGTTCAGTTCTAGAGGCCCAAATTCAATCACCCCGGAGATACTCAGACCGGATATTATCGCGCCCGGTGTAAACATTCTGGCCGGTTGGACCGGAGCCGTCGGCCCGACCGGGATGGCAGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGCGGCTTGGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728865" ref_strand="+" ref_description="SGN-E728865 [LA19AH01]">
      <seq>aggtttccagcatatgtaagccttggcaatggtaaaaatttctccggcgtttcactttacgcgggtgattcattacttaataaaatgcttcccttggtgtatgctggtaatgccagcaatgtaaccagtggaaatctctgtatgatgggtaccttaattcctgagaaagttaaaggaaaaattgtgctgtgtgacagagggattagcgctcgagtccaaaagggttttgtggtaaaagaggctggtggagccggcatggttttggctaacaccgcagcaaatggggaggaactagtggctgacgcccatttacttccagcggcggcggtgggtcaaaaagccggtgatgtaatcaagaaatatttattctcagatcctaatccaacggccgaaattctttttggaggaacaaaagtagacatcgaaccgtcaccggttgtcgcagcgttcagttctagaggcccaaattcaatcaccccggagatactcaaaccggatattatcgcgcccggtgtaaacattctggccggttggaccggagccgtcggcccgacggggatggcagaggacgatagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="105050" stop="103877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104753" g_stop="104177" g_length="577"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="577" r_length="577" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E728865" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104753" e_stop="104177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTTCCAGCATATGTAAGCCTTGGCAATGGTAAAAATTTCTCCGGCGTTTCACTTTACGCGGGTGATTCATTACTTAATAAAATGCTTCCCTTGGTGTATGCTGGTAATGCCAGCAATGTAACCAGTGGAAATCTCTGTATGATGGGTACCTTAATTCCTGAGAAAGTTAAAGGAAAAATTGTGCTGTGTGACAGAGGGATTAGCGCTCGAGTCCAAAAGGGTTTTGTGGTAAAAGAGGCTGGTGGAGCCGGCATGGTTTTGGCTAACACCGCAGCAAATGGGGAGGAACTAGTGGCTGACGCCCATTTACTTCCAGCGGCGGCGGTGGGTCAAAAAGCCGGTGATGTAATCAAGAAATATTTATTCTCAGATCCTAATCCAACGGCCGAAATTCTTTTTGGAGGAACAAAAGTAGACATCGAACCGTCACCGGTTGTCGCAGCGTTCAGTTCTAGAGGCCCAAATTCAATCACCCCGGAGATACTCAAACCGGATATTATCGCGCCCGGTGTAAACATTCTGGCCGGTTGGACCGGAGCCGTCGGCCCGACGGGGATGGCAGAGGACGATAGAC</genome_strand>
        <mrna_strand>AGGTTTCCAGCATATGTAAGCCTTGGCAATGGTAAAAATTTCTCCGGCGTTTCACTTTACGCGGGTGATTCATTACTTAATAAAATGCTTCCCTTGGTGTATGCTGGTAATGCCAGCAATGTAACCAGTGGAAATCTCTGTATGATGGGTACCTTAATTCCTGAGAAAGTTAAAGGAAAAATTGTGCTGTGTGACAGAGGGATTAGCGCTCGAGTCCAAAAGGGTTTTGTGGTAAAAGAGGCTGGTGGAGCCGGCATGGTTTTGGCTAACACCGCAGCAAATGGGGAGGAACTAGTGGCTGACGCCCATTTACTTCCAGCGGCGGCGGTGGGTCAAAAAGCCGGTGATGTAATCAAGAAATATTTATTCTCAGATCCTAATCCAACGGCCGAAATTCTTTTTGGAGGAACAAAAGTAGACATCGAACCGTCACCGGTTGTCGCAGCGTTCAGTTCTAGAGGCCCAAATTCAATCACCCCGGAGATACTCAAACCGGATATTATCGCGCCCGGTGTAAACATTCTGGCCGGTTGGACCGGAGCCGTCGGCCCGACGGGGATGGCAGAGGACGATAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E409805" ref_strand="+" ref_description="SGN-E409805 [PPI-15-I19]">
      <seq>ggagaagggtattttggtttcttgctctgctggaaatgctggacctaatcaattcagtttgtccaaccaagcaccttggatcaccaccgtcggtgctggaacaattgaccgtgattttccagcatatgttacccttggcaatggtaaaaatttctccggcgtttcactttacgcgggtgattcattacttaataagatgcttcccttggtgtatgctggtaatgccagcaatgtaaccagtggaaatctctgtatgatgggtaccttaattcctgagaaagttaaaggcaaaattgtgctgtgtgacagagggattaacgctagagtccaaaagggttttgtggtaaaagcagctggtggagccggcatggttttggctaacaccgcagcaaatggggaggagctagtggctgacgcccatttacttccagcggcggcggtgggtctaatagccggcgatgcagtcaagaaatatttattctccgatcctaatccaacggccgaaattctttttggaggaacnaaggtangaatccaaccgtcaccggttgttgcagcgttcagttccagaggcccaaatttcatcaccccggagatactcaaaccggatattatcgcgcccggtgtaaacattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="105165" stop="103931"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104865" g_stop="104231" g_length="635"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="635" r_length="635" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E409805" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E409805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104865" e_stop="104231"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAAGGGTATTTTGGTTTCTTGCTCTGCTGGAAATGCTGGACCTAATCAATTCAGTTTGGCCAACCAAGCACCTTGGATCACCACAGTCGGTGCTGGAACAATTGACCGTGATTTTCCAGCATATGTAAGCCTTGGCAATGGTAAAAATTTCTCCGGCGTTTCACTTTACGCGGGTGATTCATTACTTAATAAAATGCTTCCCTTGGTGTATGCTGGTAATGCCAGCAATGTAACCAGTGGAAATCTCTGTATGATGGGTACCTTAATTCCTGAGAAAGTTAAAGGAAAAATTGTGCTGTGTGACAGAGGGATTAGCGCTCGAGTCCAAAAGGGTTTTGTGGTAAAAGAGGCTGGTGGAGCCGGCATGGTTTTGGCTAACACCGCAGCAAATGGGGAGGAACTAGTGGCTGACGCCCATTTACTTCCAGCGGCGGCGGTGGGTCAAAAAGCCGGTGATGTAATCAAGAAATATTTATTCTCAGATCCTAATCCAACGGCCGAAATTCTTTTTGGAGGAACAAAAGTAGACATCGAACCGTCACCGGTTGTCGCAGCGTTCAGTTCTAGAGGCCCAAATTCAATCACCCCGGAGATACTCAAACCGGATATTATCGCGCCCGGTGTAAACATTC</genome_strand>
        <mrna_strand>GGAGAAGGGTATTTTGGTTTCTTGCTCTGCTGGAAATGCTGGACCTAATCAATTCAGTTTGTCCAACCAAGCACCTTGGATCACCACCGTCGGTGCTGGAACAATTGACCGTGATTTTCCAGCATATGTTACCCTTGGCAATGGTAAAAATTTCTCCGGCGTTTCACTTTACGCGGGTGATTCATTACTTAATAAGATGCTTCCCTTGGTGTATGCTGGTAATGCCAGCAATGTAACCAGTGGAAATCTCTGTATGATGGGTACCTTAATTCCTGAGAAAGTTAAAGGCAAAATTGTGCTGTGTGACAGAGGGATTAACGCTAGAGTCCAAAAGGGTTTTGTGGTAAAAGCAGCTGGTGGAGCCGGCATGGTTTTGGCTAACACCGCAGCAAATGGGGAGGAGCTAGTGGCTGACGCCCATTTACTTCCAGCGGCGGCGGTGGGTCTAATAGCCGGCGATGCAGTCAAGAAATATTTATTCTCCGATCCTAATCCAACGGCCGAAATTCTTTTTGGAGGAACNAAGGTANGAATCCAACCGTCACCGGTTGTTGCAGCGTTCAGTTCCAGAGGCCCAAATTTCATCACCCCGGAGATACTCAAACCGGATATTATCGCGCCCGGTGTAAACATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E558223" ref_strand="+" ref_description="SGN-E558223 [17530]">
      <seq>tgatgagtccaaggagtctaaatctcccagggatgatgatggacatggaacacacactgcttccacagcagctggttcagttgttcacggtgctagcctttttggttatgcttcaggaactgctcgtggaatggcctatcgtgccagagttgccgtctacaaagtttgctggcttgggggatgttttaactctgacatattggcagggatggacaaagccattgatgataaagttgatgtgctttcattatcacttggtggaagcacaccagattactacaaagacagcattgcaattggagcttttgctgctatggagaagggtattttggtttcttgctctgctggaaatgctggacctaatcaattcagtttgtccaaccaagcaccttggatcaccaccgtcggtgctggaacaattgaccgtgattttccagcatatgtaagccttggcaatggtaaaaatttctccgngcgtttcactttacgcgggtgattcattacttaataagatgcttcccttggtgtatgccggtaatgccagcaatgtaaccagtggaaatctctgtatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="105480" stop="104308"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105180" g_stop="104608" g_length="573"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="574" r_length="574" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E558223" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E558223" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105180" e_stop="104608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGAGTCCAAGGAGTCTAAATCTCCTAGGGATGATGATGGACATGGAACACACACTGCTTCGACAGCAGCTGGTTCAGTTGTTCAGGGTGCTAGCCTTTTTGGTTATGCTTCAGGAACTGCTCGTGGAATGGCCTATCGTGCCAGAGTTGCCATGTACAAAGTTTGCTGGCTTGGGGGATGTTTTAACTCTGACATATTGGCAGGGATGGACAAAGCCATTGATGATAAAGTTGATGTGCTTTCATTATCACTTGGTGGAAGCACACCAGATTACTACAAAGATAGCATTGCAATTGGAGCTTTTGCTGCTATGGAGAAGGGTATTTTGGTTTCTTGCTCTGCTGGAAATGCTGGACCTAATCAATTCAGTTTGGCCAACCAAGCACCTTGGATCACCACAGTCGGTGCTGGAACAATTGACCGTGATTTTCCAGCATATGTAAGCCTTGGCAATGGTAAAAATTTCTCCG-GCGTTTCACTTTACGCGGGTGATTCATTACTTAATAAAATGCTTCCCTTGGTGTATGCTGGTAATGCCAGCAATGTAACCAGTGGAAATCTCTGTATGAT</genome_strand>
        <mrna_strand>TGATGAGTCCAAGGAGTCTAAATCTCCCAGGGATGATGATGGACATGGAACACACACTGCTTCCACAGCAGCTGGTTCAGTTGTTCACGGTGCTAGCCTTTTTGGTTATGCTTCAGGAACTGCTCGTGGAATGGCCTATCGTGCCAGAGTTGCCGTCTACAAAGTTTGCTGGCTTGGGGGATGTTTTAACTCTGACATATTGGCAGGGATGGACAAAGCCATTGATGATAAAGTTGATGTGCTTTCATTATCACTTGGTGGAAGCACACCAGATTACTACAAAGACAGCATTGCAATTGGAGCTTTTGCTGCTATGGAGAAGGGTATTTTGGTTTCTTGCTCTGCTGGAAATGCTGGACCTAATCAATTCAGTTTGTCCAACCAAGCACCTTGGATCACCACCGTCGGTGCTGGAACAATTGACCGTGATTTTCCAGCATATGTAAGCCTTGGCAATGGTAAAAATTTCTCCGNGCGTTTCACTTTACGCGGGTGATTCATTACTTAATAAGATGCTTCCCTTGGTGTATGCCGGTAATGCCAGCAATGTAACCAGTGGAAATCTCTGTATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E709595" ref_strand="+" ref_description="SGN-E709595 [FA52CB04]">
      <seq>cggctcgacaagctgaatccttagagacccaacctgggattctctctgttttgcctgagctgatataccaactccacactactcggacacctctttttttgggacttgatagaagtgttaatatctttcctgagtccgatgctatgagtgatgtcattgtcggagtactcgatacaggggtttggccggagagaaagagctttgacgatactggatttggacctgtaccagattcgtggaaaggtgagtgtgagtccagcaacaacttcagttctgccatgtgtaacagaaagcttgttggagcgaggtatttttctaggggttatgaaactactcttggaccaattgatgagtccaaggagtctaaatctcctagggatgatgatggacatggaacacacactgcttcgacagcagctggttcagttgttcagggtgctagcctttttggttatgcttcaggaactgctcgtggaatggcctatcgtgccagagttgccatgtacaaagtttgctggcttgggggatgttttaactctgacatattggcagggatggacaaagccattgatgataaagttgatgtgctttcattatcacttggtggaagcacaccagattactacaaagatagcattgcaattggagcttttgctgctatggagaagggattttggtttcttgctctgctggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="105826" stop="104531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105526" g_stop="104831" g_length="696"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="695" r_length="695" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E709595" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105526" e_stop="104831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCTCGACAAGCTGAATCCTTAGAGACCCAACCTGGGATTCTCTCTGTTTTGCCTGAGCTGATATACCAACTCCACACTACTCGGACACCTCTTTTTTTGGGACTTGATAGAAGTGTTAATATCTTTCCTGAGTCCGATGCTATGAGTGATGTCATTGTCGGAGTACTCGATACAGGGGTTTGGCCGGAGAGAAAGAGCTTTGACGATACTGGATTTGGACCTGTACCAGATTCGTGGAAAGGTGAGTGTGAGTCCAGCAACAACTTCAGTTCTGCCATGTGTAACAGAAAGCTTGTTGGAGCGAGGTATTTTTCTAGGGGTTATGAAACTACTCTTGGACCAATTGATGAGTCCAAGGAGTCTAAATCTCCTAGGGATGATGATGGACATGGAACACACACTGCTTCGACAGCAGCTGGTTCAGTTGTTCAGGGTGCTAGCCTTTTTGGTTATGCTTCAGGAACTGCTCGTGGAATGGCCTATCGTGCCAGAGTTGCCATGTACAAAGTTTGCTGGCTTGGGGGATGTTTTAACTCTGACATATTGGCAGGGATGGACAAAGCCATTGATGATAAAGTTGATGTGCTTTCATTATCACTTGGTGGAAGCACACCAGATTACTACAAAGATAGCATTGCAATTGGAGCTTTTGCTGCTATGGAGAAGGGTATTTTGGTTTCTTGCTCTGCTGGAA</genome_strand>
        <mrna_strand>CGGCTCGACAAGCTGAATCCTTAGAGACCCAACCTGGGATTCTCTCTGTTTTGCCTGAGCTGATATACCAACTCCACACTACTCGGACACCTCTTTTTTTGGGACTTGATAGAAGTGTTAATATCTTTCCTGAGTCCGATGCTATGAGTGATGTCATTGTCGGAGTACTCGATACAGGGGTTTGGCCGGAGAGAAAGAGCTTTGACGATACTGGATTTGGACCTGTACCAGATTCGTGGAAAGGTGAGTGTGAGTCCAGCAACAACTTCAGTTCTGCCATGTGTAACAGAAAGCTTGTTGGAGCGAGGTATTTTTCTAGGGGTTATGAAACTACTCTTGGACCAATTGATGAGTCCAAGGAGTCTAAATCTCCTAGGGATGATGATGGACATGGAACACACACTGCTTCGACAGCAGCTGGTTCAGTTGTTCAGGGTGCTAGCCTTTTTGGTTATGCTTCAGGAACTGCTCGTGGAATGGCCTATCGTGCCAGAGTTGCCATGTACAAAGTTTGCTGGCTTGGGGGATGTTTTAACTCTGACATATTGGCAGGGATGGACAAAGCCATTGATGATAAAGTTGATGTGCTTTCATTATCACTTGGTGGAAGCACACCAGATTACTACAAAGATAGCATTGCAATTGGAGCTTTTGCTGCTATGGAGAAGGG-ATTTTGGTTTCTTGCTCTGCTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E340986" ref_strand="+" ref_description="SGN-E340986 [cTOF-5-H23]">
      <seq>agcagtccaagcgaaaaattaatcaaaaatgtctacatacacactactagttgttgtacttgtgtgcctatgtcacatgtctgtggcaatggtggagaagaaaacatacatcattcacatggctaaatcacaaatgccagcaatatttgatgatcatactcactggtatgacgcgtccctcaaatccgtctctgaatcagcagagatgatctatgtttataaaaacgttgttcatggttttgcagcaaggcttacagctcgacaagctgaatccttagagacccaacctgggattctctctgttttgcctgagctgatataccaactccacactactcggacacctctttttttgggacttgatagaagtgttaatatctttcctgagtccgatgctatgagtgatgtcattgtcggagtactcgatacaggggtttggccggagagaaagagctttgacgatactggatttggacctgtaccagattcgtggaaaggtgagtgtgagtccagcaacaacttcagttctgccatgtgtaacagaaagcttgttggagcgaggtatttttctaggggttatgaaactactcttggaccaattgatgagtccaaggagtctaaatctcctagggatgatgatggacatggaacacacactgcttcgacagcagctggttcagttgttcagggtgctagcctttttggttatgcttcangaactgctcgtggaatggcctatcgtgccagagtgccatgtaccaagtttgctggctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="106080" stop="104706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105780" g_stop="105006" g_length="775"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="774" r_length="774" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E340986" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340986" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105780" e_stop="105006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGTCCAAGCGAAAAATTAATCAAAAATGTCTACATACACACTACTAGTTGTTGTACTTGTGTGCCTATGTCACATGTCTGTGGCAATGGTGGAGAAGAAAACATACATCATTCACATGGCTAAATCACAAATGCCAGCAATATTTGATGATCATACTCACTGGTATGACGCGTCCCTCAAATCCGTCTCTGAATCAGCAGAGATGATCTATGTTTATAAAAACGTTGTTCATGGTTTTGCAGCAAGGCTTACAGCTCGACAAGCTGAATCCTTAGAGACCCAACCTGGGATTCTCTCTGTTTTGCCTGAGCTGATATACCAACTCCACACTACTCGGACACCTCTTTTTTTGGGACTTGATAGAAGTGTTAATATCTTTCCTGAGTCCGATGCTATGAGTGATGTCATTGTCGGAGTACTCGATACAGGGGTTTGGCCGGAGAGAAAGAGCTTTGACGATACTGGATTTGGACCTGTACCAGATTCGTGGAAAGGTGAGTGTGAGTCCAGCAACAACTTCAGTTCTGCCATGTGTAACAGAAAGCTTGTTGGAGCGAGGTATTTTTCTAGGGGTTATGAAACTACTCTTGGACCAATTGATGAGTCCAAGGAGTCTAAATCTCCTAGGGATGATGATGGACATGGAACACACACTGCTTCGACAGCAGCTGGTTCAGTTGTTCAGGGTGCTAGCCTTTTTGGTTATGCTTCAGGAACTGCTCGTGGAATGGCCTATCGTGCCAGAGTTGCCATGTACAAAGTTTGCTGGCTT</genome_strand>
        <mrna_strand>AGCAGTCCAAGCGAAAAATTAATCAAAAATGTCTACATACACACTACTAGTTGTTGTACTTGTGTGCCTATGTCACATGTCTGTGGCAATGGTGGAGAAGAAAACATACATCATTCACATGGCTAAATCACAAATGCCAGCAATATTTGATGATCATACTCACTGGTATGACGCGTCCCTCAAATCCGTCTCTGAATCAGCAGAGATGATCTATGTTTATAAAAACGTTGTTCATGGTTTTGCAGCAAGGCTTACAGCTCGACAAGCTGAATCCTTAGAGACCCAACCTGGGATTCTCTCTGTTTTGCCTGAGCTGATATACCAACTCCACACTACTCGGACACCTCTTTTTTTGGGACTTGATAGAAGTGTTAATATCTTTCCTGAGTCCGATGCTATGAGTGATGTCATTGTCGGAGTACTCGATACAGGGGTTTGGCCGGAGAGAAAGAGCTTTGACGATACTGGATTTGGACCTGTACCAGATTCGTGGAAAGGTGAGTGTGAGTCCAGCAACAACTTCAGTTCTGCCATGTGTAACAGAAAGCTTGTTGGAGCGAGGTATTTTTCTAGGGGTTATGAAACTACTCTTGGACCAATTGATGAGTCCAAGGAGTCTAAATCTCCTAGGGATGATGATGGACATGGAACACACACTGCTTCGACAGCAGCTGGTTCAGTTGTTCAGGGTGCTAGCCTTTTTGGTTATGCTTCANGAACTGCTCGTGGAATGGCCTATCGTGCCAGAG-TGCCATGTACCAAGTTTGCTGGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E705635" ref_strand="+" ref_description="SGN-E705635 [FA27CH04]">
      <seq>ggccggttggagcggtgcagtcggtcctacggggttgcctgaggacgatagacgggtcgagttcaacattatctcaggcacatccatgtcgtgtccacacgtgagtggcttagcggctttgctcaaaggagtccacccagaatggagccccgccgccattcgttcggcgctcatgaccaccgcttacaccacctacaggaacggcggagcactactagacgtagctaccggaaaaccatctacacctttcggtcacggcgctgggcacgtggatcccgtttcagcggtgaacccaggtcttgtttacgacataaacgccgatgattacctcaatttcctgtgtgcattgaaatacagtccatcacaaatcaatatcatagcaagaagaaacttcacatgtgattcaagcaaaatatacagcgtcacagatttgaattacccttcgttttcagttgcattccctgccgataccggttcaaacacaatcagatacagccggacactgactaatgttggaccgtctggaacatacaaagttgctgttactttgcccgatagttccgtggaaattatagttgaacctgaaacagttagttttactcagattaatgagaagatatcgtatagtgtgagttttactgctccatcaaagcccccatctaccaatgtattcggcaaaattgagtggtcagatgggacgcatttggtcactagtccagttgcaatttcttggtcatgaattatatgaacaaattanagagctatatatagctgctatcgatttaatgtaaagttaatcaaagaaatttatgcttcttgctcacagtgcagtgatgtttcgtaccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="110430" stop="108984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110130" g_stop="109276" g_length="855"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="855" r_length="855" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E705635" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>855</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705635" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110130" e_stop="109276"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCCGGTTGGAGCGGTGCAGTCGGTCCTACGGGGTTGCCTGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGTGGCTTAGCGGCTTTGCTCAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGACCACCGCTTACACCACCTACAGGAACGGCGGAGCACTACTAGACGTAGCTACCGGAAAACCATCTACACCTTTCGGTCACGGCGCTGGGCACGTGGATCCCGTTTCAGCGGTGAACCCAGGTCTTGTTTACGACATAAACGCCGATGATTACCTCAATTTCCTGTGTGCATTGAAATACAGTCCATCACAAATCAATATCATAGCAAGAAGAAACTTCACATGTGATTCAAGCAAAATATACAGCGTCACAGATTTGAATTACCCTTCGTTTTCAGTTGCATTCCCTGCCGATACCGGTTCAAACACAATCAGATACAGCCGGACACTGACTAATGTTGGACCGTCTGGAACATACAAAGTTGCTGTTACTTTGCCCGATAGTTCCGTGGAAATTATAGTTGAACCTGAAACAGTTAGTTTTACTCAGATTAATGAGAAGATATCGTATAGTGTGAGTTTTACTGCTCCATCAAAGCCCCCATCTACCAATGTATTCGGCAAAATTGAGTGGTCAGATGGGACGCATTTGGTCACTAGTCCAGTTGCAATTTCTTGGTCATGAATTATATGAACAAATTAAAGAGCTATATATAGCTGCTATCGATTTAATGTAAAGTTAATCAAAGAAATTTATGCTTCTTGCTCACAGTGCAGTGATGTTTCGTACCAAGTATTGTA</genome_strand>
        <mrna_strand>GGCCGGTTGGAGCGGTGCAGTCGGTCCTACGGGGTTGCCTGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGTGGCTTAGCGGCTTTGCTCAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGACCACCGCTTACACCACCTACAGGAACGGCGGAGCACTACTAGACGTAGCTACCGGAAAACCATCTACACCTTTCGGTCACGGCGCTGGGCACGTGGATCCCGTTTCAGCGGTGAACCCAGGTCTTGTTTACGACATAAACGCCGATGATTACCTCAATTTCCTGTGTGCATTGAAATACAGTCCATCACAAATCAATATCATAGCAAGAAGAAACTTCACATGTGATTCAAGCAAAATATACAGCGTCACAGATTTGAATTACCCTTCGTTTTCAGTTGCATTCCCTGCCGATACCGGTTCAAACACAATCAGATACAGCCGGACACTGACTAATGTTGGACCGTCTGGAACATACAAAGTTGCTGTTACTTTGCCCGATAGTTCCGTGGAAATTATAGTTGAACCTGAAACAGTTAGTTTTACTCAGATTAATGAGAAGATATCGTATAGTGTGAGTTTTACTGCTCCATCAAAGCCCCCATCTACCAATGTATTCGGCAAAATTGAGTGGTCAGATGGGACGCATTTGGTCACTAGTCCAGTTGCAATTTCTTGGTCATGAATTATATGAACAAATTANAGAGCTATATATAGCTGCTATCGATTTAATGTAAAGTTAATCAAAGAAATTTATGCTTCTTGCTCACAGTGCAGTGATGTTTCGTACCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E705470" ref_strand="+" ref_description="SGN-E705470 [FA27BA04]">
      <seq>ggccggttggagcggagcagtcagtcctacaggggtgcctgaggacgatagacgggtcgagttcaacatgtatctcacgcacatccatgtcgtgtccacacagtgagtggcttagcggctttgctcaaaggagtccacccacaatggagccccgccgccattcattcggcgctcatgacacaccgcttacaccacctacaggaacggcggagcactagctagacgtagctaccggaaaaccatctacacctttcggtcacggcgctgggcacgtggatcccgattcatcggtgaacccaagtcttgtttaccacataaacgccgatgattacctcaatttcctgtgtgcattgaaatacagaccatcacaaatcagtatcatagcgagaagaaacttcacatgtgattcaagcaaaatatacagcgtcacagatttgaattacccttcgttttcagttgcattccctgccgataccggttcaaacacgatcatatacaaccggacactgactaatgttggaccgtctggaacatacaaagttgctgttactttgcccgatagttccgtggaaattataattgaacctgaaacaggtagatttactcaaattaatgagaagatatcgtatagtgtgagttgtactgctccatcgaagcccccatctaccaatgtattcagcaaaattgagtggtcatatgggactcatttggtcactagaccagatgcaatttcttggtcatgaattatatgaacacattaaagagctatatatagctgctatcgatttaatgtgaagttaatcatagaaatctatgcttcttgctcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="110430" stop="109007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110130" g_stop="109307" g_length="824"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="828" r_length="828" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E705470" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>824</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110130" e_stop="109307"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCCGGTTGGAGCGGTGCAGTCGGTCCTACGGGGTTGCCTGAGGACGATAGACGGGTCGAGTTCAACAT-TATCTCAGGCACATCCATGTCGTGTCCACAC-GTGAGTGGCTTAGCGGCTTTGCTCAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGAC-CACCGCTTACACCACCTACAGGAACGGCGGAGCACTA-CTAGACGTAGCTACCGGAAAACCATCTACACCTTTCGGTCACGGCGCTGGGCACGTGGATCCCGTTTCAGCGGTGAACCCAGGTCTTGTTTACGACATAAACGCCGATGATTACCTCAATTTCCTGTGTGCATTGAAATACAGTCCATCACAAATCAATATCATAGCAAGAAGAAACTTCACATGTGATTCAAGCAAAATATACAGCGTCACAGATTTGAATTACCCTTCGTTTTCAGTTGCATTCCCTGCCGATACCGGTTCAAACACAATCAGATACAGCCGGACACTGACTAATGTTGGACCGTCTGGAACATACAAAGTTGCTGTTACTTTGCCCGATAGTTCCGTGGAAATTATAGTTGAACCTGAAACAGTTAGTTTTACTCAGATTAATGAGAAGATATCGTATAGTGTGAGTTTTACTGCTCCATCAAAGCCCCCATCTACCAATGTATTCGGCAAAATTGAGTGGTCAGATGGGACGCATTTGGTCACTAGTCCAGTTGCAATTTCTTGGTCATGAATTATATGAACAAATTAAAGAGCTATATATAGCTGCTATCGATTTAATGTAAAGTTAATCAAAGAAATTTATGCTTCTTGCTCAC</genome_strand>
        <mrna_strand>GGCCGGTTGGAGCGGAGCAGTCAGTCCTACAGGGGTGCCTGAGGACGATAGACGGGTCGAGTTCAACATGTATCTCACGCACATCCATGTCGTGTCCACACAGTGAGTGGCTTAGCGGCTTTGCTCAAAGGAGTCCACCCACAATGGAGCCCCGCCGCCATTCATTCGGCGCTCATGACACACCGCTTACACCACCTACAGGAACGGCGGAGCACTAGCTAGACGTAGCTACCGGAAAACCATCTACACCTTTCGGTCACGGCGCTGGGCACGTGGATCCCGATTCATCGGTGAACCCAAGTCTTGTTTACCACATAAACGCCGATGATTACCTCAATTTCCTGTGTGCATTGAAATACAGACCATCACAAATCAGTATCATAGCGAGAAGAAACTTCACATGTGATTCAAGCAAAATATACAGCGTCACAGATTTGAATTACCCTTCGTTTTCAGTTGCATTCCCTGCCGATACCGGTTCAAACACGATCATATACAACCGGACACTGACTAATGTTGGACCGTCTGGAACATACAAAGTTGCTGTTACTTTGCCCGATAGTTCCGTGGAAATTATAATTGAACCTGAAACAGGTAGATTTACTCAAATTAATGAGAAGATATCGTATAGTGTGAGTTGTACTGCTCCATCGAAGCCCCCATCTACCAATGTATTCAGCAAAATTGAGTGGTCATATGGGACTCATTTGGTCACTAGACCAGATGCAATTTCTTGGTCATGAATTATATGAACACATTAAAGAGCTATATATAGCTGCTATCGATTTAATGTGAAGTTAATCATAGAAATCTATGCTTCTTGCTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E704338" ref_strand="+" ref_description="SGN-E704338 [FA24AA12]">
      <seq>agggagaaagttaaaggcaaaattgtgctgtgtgacggaggggttaacgtcagagctgaaaagggttatgtggtaaaatcagccggtggagccggcatgatttttgctaacacaaatgggctggggctactggctgacgcccatttacttccagcggcggctgtgggtcaattagatggcgatgaaatcaagaagtatataacatcagatcctaatccaacggccacgattctttttggaggaacaatggtaggagtccaaccagcaccgattcttgcagcgttcagttccagaggcccaaattccatcacgccggagatacttaagccggatatcatcgcgccaggtgtcaatattctggccggttggagcggtgcagtcggtcctacggggttgcctgaggacgatagacgggtcgagttcaacattatctcaggcacatccatgtcgtgtccacacgtgagtggcttagcggctttgctcaaaggagtccacccagaatggagccccgccgccattcgttcggcgctcatgaccaccgcttacaccacctacaggaacggcggagcactactagacgtagctaccggaaaaccatctacacctttcggtcacggcgctgggcacgtggatcccgtttcagcggtgaacccaggtcttgtttacgacataaacgccgatgattacctcaatttcctgtgtgcattgaaatacagtccatcacaaatcaatatcatagcaagaagaaacttcacatgtgattcaangcaaatatacagcgtcacagatttgaattacccttcgttttcagttgcattccctgccgataccggttcaaacacaatcagatacagccggacactgactaatgttggaccgtctggaacataccaagttgctgttactttgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="110786" stop="109279"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110489" g_stop="109579" g_length="911"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="911" r_length="911" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E704338" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>911</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110489" e_stop="109579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGAGAAAGTTAAAGGCAAAATTGTGCTGTGTGACGGAGGGGTTAACGTCAGAGCTGAAAAGGGTTATGTGGTAAAATCAGCCGGTGGAGCCGGCATGATTTTTGCTAACACAAATGGGCTGGGGCTACTGGCTGACGCCCATTTACTTCCAGCGGCGGCTGTGGGTCAATTAGATGGCGATGAAATCAAGAAGTATATAACATCAGATCCTAATCCAACGGCCACGATTCTTTTTGGAGGAACAATGGTAGGAGTCCAACCAGCACCGATTCTTGCAGCGTTCAGTTCCAGAGGCCCAAATTCCATCACGCCGGAGATACTTAAGCCGGATATCATCGCGCCAGGTGTCAATATTCTGGCCGGTTGGAGCGGTGCAGTCGGTCCTACGGGGTTGCCTGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGTGGCTTAGCGGCTTTGCTCAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGACCACCGCTTACACCACCTACAGGAACGGCGGAGCACTACTAGACGTAGCTACCGGAAAACCATCTACACCTTTCGGTCACGGCGCTGGGCACGTGGATCCCGTTTCAGCGGTGAACCCAGGTCTTGTTTACGACATAAACGCCGATGATTACCTCAATTTCCTGTGTGCATTGAAATACAGTCCATCACAAATCAATATCATAGCAAGAAGAAACTTCACATGTGATTCAAGCAAAATATACAGCGTCACAGATTTGAATTACCCTTCGTTTTCAGTTGCATTCCCTGCCGATACCGGTTCAAACACAATCAGATACAGCCGGACACTGACTAATGTTGGACCGTCTGGAACATACAAAGTTGCTGTTACTTTGCC</genome_strand>
        <mrna_strand>AGGGAGAAAGTTAAAGGCAAAATTGTGCTGTGTGACGGAGGGGTTAACGTCAGAGCTGAAAAGGGTTATGTGGTAAAATCAGCCGGTGGAGCCGGCATGATTTTTGCTAACACAAATGGGCTGGGGCTACTGGCTGACGCCCATTTACTTCCAGCGGCGGCTGTGGGTCAATTAGATGGCGATGAAATCAAGAAGTATATAACATCAGATCCTAATCCAACGGCCACGATTCTTTTTGGAGGAACAATGGTAGGAGTCCAACCAGCACCGATTCTTGCAGCGTTCAGTTCCAGAGGCCCAAATTCCATCACGCCGGAGATACTTAAGCCGGATATCATCGCGCCAGGTGTCAATATTCTGGCCGGTTGGAGCGGTGCAGTCGGTCCTACGGGGTTGCCTGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGTGGCTTAGCGGCTTTGCTCAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGACCACCGCTTACACCACCTACAGGAACGGCGGAGCACTACTAGACGTAGCTACCGGAAAACCATCTACACCTTTCGGTCACGGCGCTGGGCACGTGGATCCCGTTTCAGCGGTGAACCCAGGTCTTGTTTACGACATAAACGCCGATGATTACCTCAATTTCCTGTGTGCATTGAAATACAGTCCATCACAAATCAATATCATAGCAAGAAGAAACTTCACATGTGATTCAANGCAAATATACAGCGTCACAGATTTGAATTACCCTTCGTTTTCAGTTGCATTCCCTGCCGATACCGGTTCAAACACAATCAGATACAGCCGGACACTGACTAATGTTGGACCGTCTGGAACATACCAAGTTGCTGTTACTTTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E701890" ref_strand="+" ref_description="SGN-E701890 [FA17AH09]">
      <seq>ggcctaacgtcagagctgaaaagggttatgtggtaaaatcagccggtggagccggcatgatttttgctaacacaaatgggctggggctactggctgacgcccatttacttccagcggcggctgtgggtcaattagatggcgatgaaatcaagaagtatataacatcagatcctaatccaacggccacgattctttttggaggaacaatggtaggagtccaaccagcaccgattcttgcagcgttcagttccagaggcccaaattccatcacgccggagatacttaagccggatatcatcgcgccaggtgtcaatattctggccggttggagcggtgcagtcggtcctacggggttgcctgaggacgatagacgggtcgagttcaacattatctcaggcacatccatgtcgtgtccacacgtgagtggcttagcggctttgctcaaaggagtccacccagaatggagccccgccgccattcgttcggcgctcatgaccaccgcttacaccacctacaggaacggcggagcactactagacgtagctaccggaaaaccatctacacctttcggtcacggcgctgggcacgtggatcccgtttcagcggtgaacccaggtcttgtttacgacataaacgccgatgattacctcaatttcctgtgtgcattgaaatacagtccatcacaaatcaatatcatagcaagaagaaacttcacatgtgattcaagcaaaatatacagcgtcacagatttgaattacccttcgttttcagttgcattccctgccgataccggttcaaacacaatcagatacagccggacactgactaatgttggaccgtctggaacatacaaagttgctgttactttgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="110749" stop="109279"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110449" g_stop="109579" g_length="871"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="871" r_length="871" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E701890" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>871</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110449" e_stop="109579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTTAACGTCAGAGCTGAAAAGGGTTATGTGGTAAAATCAGCCGGTGGAGCCGGCATGATTTTTGCTAACACAAATGGGCTGGGGCTACTGGCTGACGCCCATTTACTTCCAGCGGCGGCTGTGGGTCAATTAGATGGCGATGAAATCAAGAAGTATATAACATCAGATCCTAATCCAACGGCCACGATTCTTTTTGGAGGAACAATGGTAGGAGTCCAACCAGCACCGATTCTTGCAGCGTTCAGTTCCAGAGGCCCAAATTCCATCACGCCGGAGATACTTAAGCCGGATATCATCGCGCCAGGTGTCAATATTCTGGCCGGTTGGAGCGGTGCAGTCGGTCCTACGGGGTTGCCTGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGTGGCTTAGCGGCTTTGCTCAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGACCACCGCTTACACCACCTACAGGAACGGCGGAGCACTACTAGACGTAGCTACCGGAAAACCATCTACACCTTTCGGTCACGGCGCTGGGCACGTGGATCCCGTTTCAGCGGTGAACCCAGGTCTTGTTTACGACATAAACGCCGATGATTACCTCAATTTCCTGTGTGCATTGAAATACAGTCCATCACAAATCAATATCATAGCAAGAAGAAACTTCACATGTGATTCAAGCAAAATATACAGCGTCACAGATTTGAATTACCCTTCGTTTTCAGTTGCATTCCCTGCCGATACCGGTTCAAACACAATCAGATACAGCCGGACACTGACTAATGTTGGACCGTCTGGAACATACAAAGTTGCTGTTACTTTGCC</genome_strand>
        <mrna_strand>GGCCTAACGTCAGAGCTGAAAAGGGTTATGTGGTAAAATCAGCCGGTGGAGCCGGCATGATTTTTGCTAACACAAATGGGCTGGGGCTACTGGCTGACGCCCATTTACTTCCAGCGGCGGCTGTGGGTCAATTAGATGGCGATGAAATCAAGAAGTATATAACATCAGATCCTAATCCAACGGCCACGATTCTTTTTGGAGGAACAATGGTAGGAGTCCAACCAGCACCGATTCTTGCAGCGTTCAGTTCCAGAGGCCCAAATTCCATCACGCCGGAGATACTTAAGCCGGATATCATCGCGCCAGGTGTCAATATTCTGGCCGGTTGGAGCGGTGCAGTCGGTCCTACGGGGTTGCCTGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGTGGCTTAGCGGCTTTGCTCAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGACCACCGCTTACACCACCTACAGGAACGGCGGAGCACTACTAGACGTAGCTACCGGAAAACCATCTACACCTTTCGGTCACGGCGCTGGGCACGTGGATCCCGTTTCAGCGGTGAACCCAGGTCTTGTTTACGACATAAACGCCGATGATTACCTCAATTTCCTGTGTGCATTGAAATACAGTCCATCACAAATCAATATCATAGCAAGAAGAAACTTCACATGTGATTCAAGCAAAATATACAGCGTCACAGATTTGAATTACCCTTCGTTTTCAGTTGCATTCCCTGCCGATACCGGTTCAAACACAATCAGATACAGCCGGACACTGACTAATGTTGGACCGTCTGGAACATACAAAGTTGCTGTTACTTTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E702073" ref_strand="+" ref_description="SGN-E702073 [FA17CH09]">
      <seq>ggttaacgtcagagctgaaaagggttatgtggtaaaatcagccggtggagccggcatgatttttgctaacacaaatgggctggggctactggctgacgcccatttacttccagcggcggctgtgggtcaattacatggcgatgaaatcaagaagtatataacatcatatcctaatccaacggccacgattctttttggaggaacaatggtaggagtccaaccagcaccgattcttgcagcgttcagttccagaggcccaaattccatcacgccggagatacttaagccggatatcatcgcgccaggtgtcaatattctggccggttggagcggcgcagtcggtcctacggggttgcctgaggacgatagacgggtcgagttcaacattatctcaggcacatccatgtcgtgtccacacgtgagtggcttagcggctttgctcaaaggagtccacccagaatggagccccgccgccattcgttcggcgctcatgaccaccgcttacaccacctacaggaacggcggagcactactagacgtagctaccggaaaaccatctacacctttcggtcacggcgctgggcacgtggatcccgtttcagcggtgaacccacgacttgtttacgacataaacgccgatgattacctcaatttcctgtgtgcattgaaatacagtccatccacaatcaatatcctagcaacaagaaacttcacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="110748" stop="109433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110448" g_stop="109733" g_length="716"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="716" r_length="716" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E702073" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110448" e_stop="109733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTAACGTCAGAGCTGAAAAGGGTTATGTGGTAAAATCAGCCGGTGGAGCCGGCATGATTTTTGCTAACACAAATGGGCTGGGGCTACTGGCTGACGCCCATTTACTTCCAGCGGCGGCTGTGGGTCAATTAGATGGCGATGAAATCAAGAAGTATATAACATCAGATCCTAATCCAACGGCCACGATTCTTTTTGGAGGAACAATGGTAGGAGTCCAACCAGCACCGATTCTTGCAGCGTTCAGTTCCAGAGGCCCAAATTCCATCACGCCGGAGATACTTAAGCCGGATATCATCGCGCCAGGTGTCAATATTCTGGCCGGTTGGAGCGGTGCAGTCGGTCCTACGGGGTTGCCTGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGTGGCTTAGCGGCTTTGCTCAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGACCACCGCTTACACCACCTACAGGAACGGCGGAGCACTACTAGACGTAGCTACCGGAAAACCATCTACACCTTTCGGTCACGGCGCTGGGCACGTGGATCCCGTTTCAGCGGTGAACCCAGGTCTTGTTTACGACATAAACGCCGATGATTACCTCAATTTCCTGTGTGCATTGAAATACAGTCCATCACAAATCAATATCATAGCAAGAAGAAACTTCACAT</genome_strand>
        <mrna_strand>GGTTAACGTCAGAGCTGAAAAGGGTTATGTGGTAAAATCAGCCGGTGGAGCCGGCATGATTTTTGCTAACACAAATGGGCTGGGGCTACTGGCTGACGCCCATTTACTTCCAGCGGCGGCTGTGGGTCAATTACATGGCGATGAAATCAAGAAGTATATAACATCATATCCTAATCCAACGGCCACGATTCTTTTTGGAGGAACAATGGTAGGAGTCCAACCAGCACCGATTCTTGCAGCGTTCAGTTCCAGAGGCCCAAATTCCATCACGCCGGAGATACTTAAGCCGGATATCATCGCGCCAGGTGTCAATATTCTGGCCGGTTGGAGCGGCGCAGTCGGTCCTACGGGGTTGCCTGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGTGGCTTAGCGGCTTTGCTCAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGACCACCGCTTACACCACCTACAGGAACGGCGGAGCACTACTAGACGTAGCTACCGGAAAACCATCTACACCTTTCGGTCACGGCGCTGGGCACGTGGATCCCGTTTCAGCGGTGAACCCACGACTTGTTTACGACATAAACGCCGATGATTACCTCAATTTCCTGTGTGCATTGAAATACAGTCCATCCACAATCAATATCCTAGCAACAAGAAACTTCACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E553607" ref_strand="+" ref_description="SGN-E553607 [cTSC-1-K17]">
      <seq>atgctggacccaatcaattcagtttggctaaccaagcaccttggatcaccaccgtgggtgccggaacagttgaccgtgattttccagcatatgtaagccttggcaatggtaaaaatttctccggtgtttcactttacgcgggtgatccattacccagtgggatgcttcccttggtgtatgcaggtaatgccagcaatgcaaccaatggaaatctctgtataatgggaaccttaattcctgagaaagttaaaggcaaaattgtgctgtgtgacggaggggttaacgtcagagctgaaaagggttatgtggtaaaatcagccggtggagccggcatgatttttgctaacacaaatgggctggggctactggctgacgcccatttacttccagcggcggctgtgggtcaattagatggcgatgaaatcaagaagtatataacatcagatcctaatccaacggccacgattctttttggaggaacaatggtaggagtccaaccagcaccgattcttgcagcgttcagttccagaggcccaaattccatcacgccggagatacttaagccggatatcatcgcgccaggtgtcaatattctggccggttggagcggtgcagtcggtcctacggggttgcctgaggacgatagacgggtcgagttcaacattatctcaggcacatccatgtcgtgtccacacgtgagtggcttagcggctttgctcaaaggagtccacccagaatggagccccgccgccattcgttcggcgctcatgaccaccgcttacaccacctacaggaacggcggagcactactagacgtagctaccggaaaacatctacacctttcggtcacggcgctgggcacgtggatcccgtttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="111025" stop="109549"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110725" g_stop="109849" g_length="877"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="876" r_length="876" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E553607" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>877</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553607" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110725" e_stop="109849"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCTGGACCCAATCAATTCAGTTTGGCTAACCAAGCACCTTGGATCACCACCGTGGGTGCCGGAACAGTTGACCGTGATTTTCCAGCATATGTAAGCCTTGGCAATGGTAAAAATTTCTCCGGTGTTTCACTTTACGCGGGTGATCCATTACCCAGTGGGATGCTTCCCTTGGTGTATGCAGGTAATGCCAGCAATGCAACCAATGGAAATCTCTGTATAATGGGAACCTTAATTCCTGAGAAAGTTAAAGGCAAAATTGTGCTGTGTGACGGAGGGGTTAACGTCAGAGCTGAAAAGGGTTATGTGGTAAAATCAGCCGGTGGAGCCGGCATGATTTTTGCTAACACAAATGGGCTGGGGCTACTGGCTGACGCCCATTTACTTCCAGCGGCGGCTGTGGGTCAATTAGATGGCGATGAAATCAAGAAGTATATAACATCAGATCCTAATCCAACGGCCACGATTCTTTTTGGAGGAACAATGGTAGGAGTCCAACCAGCACCGATTCTTGCAGCGTTCAGTTCCAGAGGCCCAAATTCCATCACGCCGGAGATACTTAAGCCGGATATCATCGCGCCAGGTGTCAATATTCTGGCCGGTTGGAGCGGTGCAGTCGGTCCTACGGGGTTGCCTGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGTGGCTTAGCGGCTTTGCTCAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGACCACCGCTTACACCACCTACAGGAACGGCGGAGCACTACTAGACGTAGCTACCGGAAAACCATCTACACCTTTCGGTCACGGCGCTGGGCACGTGGATCCCGTTTC</genome_strand>
        <mrna_strand>ATGCTGGACCCAATCAATTCAGTTTGGCTAACCAAGCACCTTGGATCACCACCGTGGGTGCCGGAACAGTTGACCGTGATTTTCCAGCATATGTAAGCCTTGGCAATGGTAAAAATTTCTCCGGTGTTTCACTTTACGCGGGTGATCCATTACCCAGTGGGATGCTTCCCTTGGTGTATGCAGGTAATGCCAGCAATGCAACCAATGGAAATCTCTGTATAATGGGAACCTTAATTCCTGAGAAAGTTAAAGGCAAAATTGTGCTGTGTGACGGAGGGGTTAACGTCAGAGCTGAAAAGGGTTATGTGGTAAAATCAGCCGGTGGAGCCGGCATGATTTTTGCTAACACAAATGGGCTGGGGCTACTGGCTGACGCCCATTTACTTCCAGCGGCGGCTGTGGGTCAATTAGATGGCGATGAAATCAAGAAGTATATAACATCAGATCCTAATCCAACGGCCACGATTCTTTTTGGAGGAACAATGGTAGGAGTCCAACCAGCACCGATTCTTGCAGCGTTCAGTTCCAGAGGCCCAAATTCCATCACGCCGGAGATACTTAAGCCGGATATCATCGCGCCAGGTGTCAATATTCTGGCCGGTTGGAGCGGTGCAGTCGGTCCTACGGGGTTGCCTGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGTGGCTTAGCGGCTTTGCTCAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGACCACCGCTTACACCACCTACAGGAACGGCGGAGCACTACTAGACGTAGCTACCGGAAAA-CATCTACACCTTTCGGTCACGGCGCTGGGCACGTGGATCCCGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E704631" ref_strand="+" ref_description="SGN-E704631 [FA24DC10]">
      <seq>cgtgggtgccggaacagttgaccgtgattttccagcatatgtaagccttggcaatggtaaaaatttctccggtgtttcactttacgcgggtgatccattacccagtgggatgcttcccttggtgtatgcaggtaatgccagcaatgcaaccaatggaaatctctgtataatgggaaccttaattcctgagaaagttaaaggcaaaattgtgctgtgtgacggaggggttaacgtcagagctgaaaagggttatgtggtaaaatcagccggtggagccggcatgatttttgctaacacaaatgggctggggctactggctgacgcccatttacttccagcggcggctgtgggtcaattagatggcgatgaaatcaagaagtatataacatcagatcctaatccaacggccacgattctttttggaggaacaatggtaggagtccaaccagcaccgattcttgcagcgttcagttccagaggcccaaattccatcacgccggagatacttaagccggatatcatcgcgccaggtgtcaatattctggccggttggagcggtgcagtcggtcctacggcgtcgcctgaggacgatagacgggtcgagttcaacattatctcaggcacatccatgtcgtgtccacacgtgagtggcttagcgccttcgctcaaaggagtccacccagaatggagccccgccgccattcgttcggcgctcatgaccaccgcttacaccacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="110973" stop="109637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110673" g_stop="109937" g_length="737"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="737" r_length="737" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E704631" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110673" e_stop="109937"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTGGGTGCCGGAACAGTTGACCGTGATTTTCCAGCATATGTAAGCCTTGGCAATGGTAAAAATTTCTCCGGTGTTTCACTTTACGCGGGTGATCCATTACCCAGTGGGATGCTTCCCTTGGTGTATGCAGGTAATGCCAGCAATGCAACCAATGGAAATCTCTGTATAATGGGAACCTTAATTCCTGAGAAAGTTAAAGGCAAAATTGTGCTGTGTGACGGAGGGGTTAACGTCAGAGCTGAAAAGGGTTATGTGGTAAAATCAGCCGGTGGAGCCGGCATGATTTTTGCTAACACAAATGGGCTGGGGCTACTGGCTGACGCCCATTTACTTCCAGCGGCGGCTGTGGGTCAATTAGATGGCGATGAAATCAAGAAGTATATAACATCAGATCCTAATCCAACGGCCACGATTCTTTTTGGAGGAACAATGGTAGGAGTCCAACCAGCACCGATTCTTGCAGCGTTCAGTTCCAGAGGCCCAAATTCCATCACGCCGGAGATACTTAAGCCGGATATCATCGCGCCAGGTGTCAATATTCTGGCCGGTTGGAGCGGTGCAGTCGGTCCTACGGGGTTGCCTGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGTGGCTTAGCGGCTTTGCTCAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGACCACCGCTTACACCACCT</genome_strand>
        <mrna_strand>CGTGGGTGCCGGAACAGTTGACCGTGATTTTCCAGCATATGTAAGCCTTGGCAATGGTAAAAATTTCTCCGGTGTTTCACTTTACGCGGGTGATCCATTACCCAGTGGGATGCTTCCCTTGGTGTATGCAGGTAATGCCAGCAATGCAACCAATGGAAATCTCTGTATAATGGGAACCTTAATTCCTGAGAAAGTTAAAGGCAAAATTGTGCTGTGTGACGGAGGGGTTAACGTCAGAGCTGAAAAGGGTTATGTGGTAAAATCAGCCGGTGGAGCCGGCATGATTTTTGCTAACACAAATGGGCTGGGGCTACTGGCTGACGCCCATTTACTTCCAGCGGCGGCTGTGGGTCAATTAGATGGCGATGAAATCAAGAAGTATATAACATCAGATCCTAATCCAACGGCCACGATTCTTTTTGGAGGAACAATGGTAGGAGTCCAACCAGCACCGATTCTTGCAGCGTTCAGTTCCAGAGGCCCAAATTCCATCACGCCGGAGATACTTAAGCCGGATATCATCGCGCCAGGTGTCAATATTCTGGCCGGTTGGAGCGGTGCAGTCGGTCCTACGGCGTCGCCTGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGTGGCTTAGCGCCTTCGCTCAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGACCACCGCTTACACCACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E554213" ref_strand="+" ref_description="SGN-E554213 [cTSC-3-J16]">
      <seq>gcctttttggttatgcttcaggaactgctcgtggaatggcttatcgtgccagagttgccgtctacaaggtttgctggcttgggaaatgctttggccccgacatattggcaggtatggacaaagccattgatgataatgttaatgtgctttcattatcacttggtggagagcattttgatttctacagcgacgatgttgcaattggagcatttgctgcaatggagaagggtattatggtttcttgctctgctggaaatgctggacccaatcaattcagtttggctaaccaagcaccttggatcaccaccgtgggtgccggaacagttgaccgtgattttccagcatatgtaagccttggcaatggtaaaaatttctccggtgtttcactttacgcgggtgatccattacccagtgggatgcttcccttggtgtatgcaggtaatgccagcaatgcaaccaatggaaatctctgtataatgggaaccttaattcctgagaaagttaaaggcaaaattgtgctgtgtgacggaggggttaacgtcagagctgaaaagggttatgtggtaaaataaaaaaatggagccgggatgatttttgctaacacaaatgggctggggctactggctgacgcccatttacttccagcggcggctgtgggtcaattagatggcgatgaaatcaagaagtatataacatcagatcctaatccaacggccacgattctttttggaggacaatggtaggagtccaaccagcaccgattcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="111280" stop="109913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110980" g_stop="110213" g_length="768"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="767" r_length="767" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E554213" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110980" e_stop="110213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTTTTGGTTATGCTTCAGGAACTGCTCGTGGAATGGCTTATCGTGCCAGAGTTGCCGTCTACAAGGTTTGCTGGCTTGGGAAATGCTTTGGCCCCGACATATTGGCAGGTATGGACAAAGCCATTGATGATAATGTTAATGTGCTTTCATTATCACTTGGTGGAGAGCATTTTGATTTCTACAGCGACGATGTTGCAATTGGAGCATTTGCTGCAATGGAGAAGGGTATTATGGTTTCTTGCTCTGCTGGAAATGCTGGACCCAATCAATTCAGTTTGGCTAACCAAGCACCTTGGATCACCACCGTGGGTGCCGGAACAGTTGACCGTGATTTTCCAGCATATGTAAGCCTTGGCAATGGTAAAAATTTCTCCGGTGTTTCACTTTACGCGGGTGATCCATTACCCAGTGGGATGCTTCCCTTGGTGTATGCAGGTAATGCCAGCAATGCAACCAATGGAAATCTCTGTATAATGGGAACCTTAATTCCTGAGAAAGTTAAAGGCAAAATTGTGCTGTGTGACGGAGGGGTTAACGTCAGAGCTGAAAAGGGTTATGTGGTAAAATCAGCCGGTGGAGCCGGCATGATTTTTGCTAACACAAATGGGCTGGGGCTACTGGCTGACGCCCATTTACTTCCAGCGGCGGCTGTGGGTCAATTAGATGGCGATGAAATCAAGAAGTATATAACATCAGATCCTAATCCAACGGCCACGATTCTTTTTGGAGGAACAATGGTAGGAGTCCAACCAGCACCGATTCTTG</genome_strand>
        <mrna_strand>GCCTTTTTGGTTATGCTTCAGGAACTGCTCGTGGAATGGCTTATCGTGCCAGAGTTGCCGTCTACAAGGTTTGCTGGCTTGGGAAATGCTTTGGCCCCGACATATTGGCAGGTATGGACAAAGCCATTGATGATAATGTTAATGTGCTTTCATTATCACTTGGTGGAGAGCATTTTGATTTCTACAGCGACGATGTTGCAATTGGAGCATTTGCTGCAATGGAGAAGGGTATTATGGTTTCTTGCTCTGCTGGAAATGCTGGACCCAATCAATTCAGTTTGGCTAACCAAGCACCTTGGATCACCACCGTGGGTGCCGGAACAGTTGACCGTGATTTTCCAGCATATGTAAGCCTTGGCAATGGTAAAAATTTCTCCGGTGTTTCACTTTACGCGGGTGATCCATTACCCAGTGGGATGCTTCCCTTGGTGTATGCAGGTAATGCCAGCAATGCAACCAATGGAAATCTCTGTATAATGGGAACCTTAATTCCTGAGAAAGTTAAAGGCAAAATTGTGCTGTGTGACGGAGGGGTTAACGTCAGAGCTGAAAAGGGTTATGTGGTAAAATAAAAAAATGGAGCCGGGATGATTTTTGCTAACACAAATGGGCTGGGGCTACTGGCTGACGCCCATTTACTTCCAGCGGCGGCTGTGGGTCAATTAGATGGCGATGAAATCAAGAAGTATATAACATCAGATCCTAATCCAACGGCCACGATTCTTTTTGGAGG-ACAATGGTAGGAGTCCAACCAGCACCGATTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E253292" ref_strand="-" ref_description="SGN-E253292 [cLEG-26-M8]">
      <seq>tatcccaactttcaagtttggttttttggttagagttcgttaacaggcaaaaaaaagcttaatccgaatgatggcaagaattatatagatatataatgatattagttagtaaaccaactaccaaatgtaggggtaatttttttttcttttttgaatattaagttgtggtgcatagtgtttcatccttaactaaagattttatgttcgagctcaagtatgaaaaaaaattttgttgggagcatcccctcgaatggattttacaaagcgcaattcaaattcgatcgaagctccaatacggattttgaacactttggccgaaaaaaaaagctttttgaaaattttctttctttctttgtaggatacatgcaagaaaatatgtatcgccagttttctctttaaatgtcctattgattgtagttaccttgaagattttgtacaaggctccatttgggaatattttgcaaattatcttatcatgtttgttatataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="112639" stop="113728"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112939" g_stop="113427" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="489" r_length="489" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="490" polyA_stop="527"/>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E253292" ref_strand="-">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253292" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="112939" e_stop="113427"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCACAACTTTCAAGTTTGGTTTTTTGGTTAGAGTTCGTTAACAGGCAAAAAGAAGCTTAATCCGAATGATGGCAAGAATTATATAGATATATAATGATATTAGTTAGTAAACCAACTACCAAATGTATGCGTAATTTTTTTTTCTTTTTTGTATATTAAGTTGTGGTGCATAGTGTTTCATCCTTAACTAGAGATTTTATGTTCGAGCTCAAGTATGAAAGAAAATTTTGTTGGGAGCATCACCTCGAATGGATCTTACAAAGCGCAATTCAAATTCGATCGAAGCTCCAATACGGATTTTGAACACTTTGGCCGAAAAAAAAAGCTTTTTGGATATTTTCTTTCTTTCTTTGTAGGATACATGCAAGAAAATATGTATCGACAGTTTTCTCTTTATATGTCCTATTGATTGTAGTTACCTTGAAGATTTTGTACAAGGCTCCATTTGGGAATATTTTGCAAATTATCTTATCATGTTTGTTATATA</genome_strand>
        <mrna_strand>TATCCCAACTTTCAAGTTTGGTTTTTTGGTTAGAGTTCGTTAACAGGCAAAAAAAAGCTTAATCCGAATGATGGCAAGAATTATATAGATATATAATGATATTAGTTAGTAAACCAACTACCAAATGTAGGGGTAATTTTTTTTTCTTTTTTGAATATTAAGTTGTGGTGCATAGTGTTTCATCCTTAACTAAAGATTTTATGTTCGAGCTCAAGTATGAAAAAAAATTTTGTTGGGAGCATCCCCTCGAATGGATTTTACAAAGCGCAATTCAAATTCGATCGAAGCTCCAATACGGATTTTGAACACTTTGGCCGAAAAAAAAAGCTTTTTGAAAATTTTCTTTCTTTCTTTGTAGGATACATGCAAGAAAATATGTATCGCCAGTTTTCTCTTTAAATGTCCTATTGATTGTAGTTACCTTGAAGATTTTGTACAAGGCTCCATTTGGGAATATTTTGCAAATTATCTTATCATGTTTGTTATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E222654" ref_strand="+" ref_description="SGN-E222654 [cLEL-16-O11](-)">
      <seq>caggaaagaagaactgttgcgcttgcccctggaagtcaaggaggacgttgttctagcaaaagctgccgcttaagcagttgatggaaggccagtttactgcagagataggtattatcgtgcattggccggtggccagtactgcaaatgggaagacttagtttaataagaggatatatataagtgaagaaagctccagttaaattctgtgattgctcaaaagatctggacaattgagcctcttcttataattttaacgaagaaattttgatgttttatgcattagataatgggcatgcaaagaacaaaagaaagagaatcatacccccaaaaaaaaaaaaaaaaaccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="118685" stop="29661"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118463" g_stop="118461" g_length="3"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="3" r_length="3" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118460" i_stop="118384" i_length="77">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118383" g_stop="118058" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="329" r_length="326" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="118057" i_stop="117938" i_length="120">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117937" g_stop="117904" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="363" r_length="34" r_score="0.676"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E222654" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118463" e_stop="118461"/>
          <exon e_start="118383" e_stop="118058"/>
          <exon e_start="117937" e_stop="117904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGTAATTCTATTGAAAACTTAAGAAGTACAATACTATAAAATTTCATGAGCTTACGTTGTTTCGCTATGTAATTAAAGGAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGATGGAAGGCCAGTTTACTGCAGAGATAGGTATTATCGTGCATTGGCCGGTGGACAGTACTGCAAATGGGAAGACTTAGTTAAATAAGAGGATATATATAAGTGAAGAAAGCTACAGTTAAATTCTGTGATTGCTCAAAAGATCTGTACAATTGAGCCTCTTCTTATAATTTTAACGAAGAAATTTTGATGTTTTATGCATTAGATAATGCGCATGCAAAGAACAAAAGAAAGAGAATCATAACCCAAAATGTTAACACCATCATTGAGTTTTTGGCTAAAATCATCCTTAATCTATACCCAAAACTTAACATACATCCTTCAAGTATTTAAAAGTGAACAAATTTCATCCTTATACTTGAATTTATTAGAAAACTAACAAATACCACAAAAATAAAGCATTAT</genome_strand>
        <mrna_strand>CAG.............................................................................GAAAGAAGAACTGTTGCGCTTGCCCCTGGAAGTCAAGGAGGACGTTGTTCTAGCAAAAGCTGCCGCTTAAGCAGTTGATGGAAGGCCAGTTTACTGCAGAGATAGGTATTATCGTGCATTGGCCGGTGGCCAGTACTGCAAATGGGAAGACTTAGTTTAATAAGAGGATATATATAAGTGAAGAAAGCTCCAGTTAAATTCTGTGATTGCTCAAAAGATCTGGACAATTGAGCCTCTTCTTATAATTTTAACGAAGAAATTTTGATGTTTTATGCATTAGATAATGGGCATGCAAAGAACAAAAGAAAGAGAATCATACCCCCAAA........................................................................................................................AAAAAAAAAAAAAACCAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E577461" ref_strand="-" ref_description="SGN-E577461 [59358]">
      <seq>caagtacagggactcttttcttgttgcactgattgtcctaagaatttatctgggatggagctatgttggagataggctttttatcagcaagttataccttatgaagagaccggatggtatgatggacagatgtgggtgaagccccgctgagatcctagctcgggataggctgttgggctcttataaggtgaaaccagtcattaaaatgctgaagcaaacgctagttggaacaggggctttactagttgcagcagtctcattattcatatttgcaacaccagtagaagattttttccgcgatactttcacaacaaaagaaaactcattgagttccacctcaacaaacagcacaaataaactaggcatcaggaaagaagaactgttacgcttgccactggaagtcaaggaggacgatgatctggctaaagctgctgctgaagcagctgatggaaggccagtttactgcagagataggtattatcgtgcattggccggtggtcagtactgcaaatgggaagacttggttaaataagaggatatataagtgaagaaagctacagttaaattctatgattgctcaaaagatctgtacaattgagcctcttcttataattttaaagaagaaattttgatgttttacgcattagataatgtgtatgcaaagaaaaaaaagaaagagaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="120247" stop="117769"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119947" g_stop="119895" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119894" i_stop="119727" i_length="168">
            <donor d_prob="0.831" d_score="0.96"/>
            <acceptor a_prob="0.341" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119726" g_stop="119631" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="151" r_length="99" r_score="0.906"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119630" i_stop="118792" i_length="839">
            <donor d_prob="0.990" d_score="0.90"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118791" g_stop="118756" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="187" r_length="36" r_score="0.944"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="118755" i_stop="118643" i_length="113">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.334" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118642" g_stop="118461" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="369" r_length="182" r_score="0.973"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="118460" i_stop="118384" i_length="77">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="118383" g_stop="118069" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="683" r_length="314" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E577461" ref_strand="-">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577461" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="119947" e_stop="119895"/>
          <exon e_start="119726" e_stop="119631"/>
          <exon e_start="118791" e_stop="118756"/>
          <exon e_start="118642" e_stop="118461"/>
          <exon e_start="118383" e_stop="118069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTGGTAAAGTTCTTCAATTGCAGGACTTCAATTTTTTGGTCAAATCATTTAGATCACATTCAATCAATGACCATAATAGGGATAGGAGCTCCGCTGGAGATAGATAATTTGAGAACTTAACTTCTCTAATATTCTACGTAACATTCTAATTCCTGACAATGACCACAATAGGGATGGAGCTATGTTGGAGATAGGC-TTTTATCAGC-AGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCC-CAGAGGTTAGTGGTCTTTCCTTTGCATACTTATTTAACAGGTTCTTTCTCTTTGCTTCCTCTGTTCCTCCTCATTCCCACAGTAGGAAAATATTGCCAGCTTCAAAATGGATAAATTAGCTTCAATCCAGTTCACTAAAATAGGTCATTTATACTAGTTACATCAAGCACATCTAAGTAAAGTAAGTCAAGTTGAACTCTTTTGTTAAAAAAAGAAGGTTAACAATATGAACTTTAATCATTGACAAACTGAATCTAACAAGTGCTCATGGATATGAAGAATACATAGCTAGCAACAAGGGGGAAATGGTGTAATATTGCTTGACAAGAATTGTATCACATAATAGATAAGAGCAAGCGCCCAGAGCCCTAACGACTAACAGTGAGGTGAAAATGGTCCAATATAGCATGAAATGGACTTAAAATTTGGTATCACAAATAAAACGCGGGAAATGAAGCTACATGTGAAAGCAATAAGTTGTACTTCCTTGTGTTGGTTAAATCATCAGTCCTTGCACAATACCCTTTTCTTCTTAGCACAAACAGCTATACTAAAGATTTCAATAAAATAGGTTCTTACTTTTCATGGTATAGAAATGTAGTTATCTTTCCGTGAAACTTTGAGCAACAGATCTTCTAGAAAGTAATAGCATTATCTTTTACAATAACACTACATGATGGAACAACGTCTATACATGAAGCTAATATTAGTTCCGCACTTGTAATAATTCATGCTCTAAAAGTCTATAGCCACCTGCACTTCTTGAAAAATTTATCAGAATCCAAGCTCTAAAAGTCTGTAATGATGTTGCACGTATGACATTTAATGTGATTATTCCTTGCAGATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAGGTACCAGATTGATCTATAAAATTCATCAGCTGGTTACATCATATTCTAACTGTCAATAGAGTAGATCTTTCCTATTACGAGCTTGACAAAGCTGAAAGAATTTATTTACCTAGGTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAGGTAATTCTATTGAAAACTTAAGAAGTACAATACTATAAAATTTCATGAGCTTACGTTGTTTCGCTATGTAATTAAAGGAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGATGGAAGGCCAGTTTACTGCAGAGATAGGTATTATCGTGCATTGGCCGGTGGACAGTACTGCAAATGGGAAGACTTAGTTAAATAAGAGGATATATATAAGTGAAGAAAGCTACAGTTAAATTCTGTGATTGCTCAAAAGATCTGTACAATTGAGCCTCTTCTTATAATTTTAACGAAGAAATTTTGATGTTTTATGCATTAGATAATGCGCATGCAAAG-AACAAAAGAAAGAGAATC</genome_strand>
        <mrna_strand>CAAGTACAGGGACTC-TTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTG........................................................................................................................................................................GGATGGAGCTATGTTGGAGATAGGCTTTTTATCAGCAAGTTATACCTTATGAAGAGACCGGATGGTATGATGGACAGATGTGGGTGAAGCCCCGCTGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTAGCTCGGGATAGGCTGTTGGGCTCTTATAAG.................................................................................................................GTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTACTAGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCGATACTTTCACAACAAAAGAAAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAG.............................................................................GAAAGAAGAACTGTTACGCTTGCCACTGGAAGTCAAGGAGGACGATGATCTGGCTAAAGCTGCTGCTGAAGCAGCTGATGGAAGGCCAGTTTACTGCAGAGATAGGTATTATCGTGCATTGGCCGGTGGTCAGTACTGCAAATGGGAAGACTTGGTTAAATAAGAGG--ATATATAAGTGAAGAAAGCTACAGTTAAATTCTATGATTGCTCAAAAGATCTGTACAATTGAGCCTCTTCTTATAATTTTAAAGAAGAAATTTTGATGTTTTACGCATTAGATAATGTGTATGCAAAGAAAAAAAAGAAAGAGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E222411" ref_strand="+" ref_description="SGN-E222411 [cLEL-16-O11](-)">
      <seq>agtctcattattcatatttgcaacaccagtagaagattttttccgcaatactttcacaacaaacgagaactcattgagttccacctcaacaaacagcacaaataaactaggcatcaggaaagaagaactgttgcgcttgcccctggaagtcaaggaggacgatgatctagcaaaagctgccgctgaagcagctgatggaaggccagtttactgcagagataggtattatcgtgcattggccggtggacagtactgcaaatgggaagacttagttaaataagaggatatatataagtgaagaaagctccagttaaattctgtgattgctcaaaagatctgtacaattgagcctcttcttataattttaacgaagaaattttgatgttttatgcattagataatgggcatgcaaagaccaaaagaaagagaatccccccccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="118877" stop="117769"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118577" g_stop="118461" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118460" i_stop="118384" i_length="77">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118383" g_stop="118069" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="432" r_length="315" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="440" polyA_stop="477"/>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E222411" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222411" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118577" e_stop="118461"/>
          <exon e_start="118383" e_stop="118069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAGGTAATTCTATTGAAAACTTAAGAAGTACAATACTATAAAATTTCATGAGCTTACGTTGTTTCGCTATGTAATTAAAGGAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGATGGAAGGCCAGTTTACTGCAGAGATAGGTATTATCGTGCATTGGCCGGTGGACAGTACTGCAAATGGGAAGACTTAGTTAAATAAGAGGATATATATAAGTGAAGAAAGCTACAGTTAAATTCTGTGATTGCTCAAAAGATCTGTACAATTGAGCCTCTTCTTATAATTTTAACGAAGAAATTTTGATGTTTTATGCATTAGATAATGCGCATGCAAAGAACAAAAGAAAGAGAATC</genome_strand>
        <mrna_strand>AGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAG.............................................................................GAAAGAAGAACTGTTGCGCTTGCCCCTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGATGGAAGGCCAGTTTACTGCAGAGATAGGTATTATCGTGCATTGGCCGGTGGACAGTACTGCAAATGGGAAGACTTAGTTAAATAAGAGGATATATATAAGTGAAGAAAGCTCCAGTTAAATTCTGTGATTGCTCAAAAGATCTGTACAATTGAGCCTCTTCTTATAATTTTAACGAAGAAATTTTGATGTTTTATGCATTAGATAATGGGCATGCAAAGACCAAAAGAAAGAGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E733301" ref_strand="+" ref_description="SGN-E733301 [LB04CA09]">
      <seq>cctccagagatcttagctcgggataggctgttgggatcttataaggtgaaaccagtcattaaaatgctgaagcaaacgctagttggaacaggggctttgcttgttgcagcagtctcattattcatatttgcaacaccagtagaagattttttccgcaatactttcacaacaaacgagaactcattgagttccacctcaacaaacagcacaaataaactaggcatcaggaaagaagaactgttgcgcttgccactggaagtcaaggaggacgatgatctagcaaaagctgccgctgaagcagctgatggaaggccagtttactgcagagataggtattatcgtgcattggccggtggacagtactgcaaatgggaagacttagttaaataagaggatatatataagtgaagaaagctacagttaaattctgtgattgctcaaaagatctgtacaattgagcctcttcttataattttaacgaagaaattttgatgttttatgcattanaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="119093" stop="117800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118791" g_stop="118756" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="45" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118755" i_stop="118643" i_length="113">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.334" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118642" g_stop="118461" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="227" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="118460" i_stop="118384" i_length="77">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118383" g_stop="118104" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="507" r_length="280" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="508" polyA_stop="525"/>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E733301" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733301" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118791" e_stop="118756"/>
          <exon e_start="118642" e_stop="118461"/>
          <exon e_start="118383" e_stop="118104"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAGGTACCAGATTGATCTATAAAATTCATCAGCTGGTTACATCATATTCTAACTGTCAATAGAGTAGATCTTTCCTATTACGAGCTTGACAAAGCTGAAAGAATTTATTTACCTAGGTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAGGTAATTCTATTGAAAACTTAAGAAGTACAATACTATAAAATTTCATGAGCTTACGTTGTTTCGCTATGTAATTAAAGGAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGATGGAAGGCCAGTTTACTGCAGAGATAGGTATTATCGTGCATTGGCCGGTGGACAGTACTGCAAATGGGAAGACTTAGTTAAATAAGAGGATATATATAAGTGAAGAAAGCTACAGTTAAATTCTGTGATTGCTCAAAAGATCTGTACAATTGAGCCTCTTCTTATAATTTTAACGAAGAAATTTTGATGTTTTATGCATTAG</genome_strand>
        <mrna_strand>ATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAG.................................................................................................................GTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAG.............................................................................GAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGATGGAAGGCCAGTTTACTGCAGAGATAGGTATTATCGTGCATTGGCCGGTGGACAGTACTGCAAATGGGAAGACTTAGTTAAATAAGAGGATATATATAAGTGAAGAAAGCTACAGTTAAATTCTGTGATTGCTCAAAAGATCTGTACAATTGAGCCTCTTCTTATAATTTTAACGAAGAAATTTTGATGTTTTATGCATTAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E738415" ref_strand="+" ref_description="SGN-E738415 [LC13CC10]">
      <seq>agatatttatctgggatggagctatgttggagataggcttttatcagcagttataccttatgaagagactggatggtatgatgggcagatgtgggtgaagcccccagagatcttagctcgggataggctgttgggatcttataaggtgaaaccagtcattaaaatgctgaagcaaacgctagttggaacaggggctttgcttgttgcagcagtctcattattcatatttgcaacaccagtagaagattttttccgcaatactttcacaacaaacgagaactcattgagttccacctcaacaaacagcacaaataaactaggcatcaggaaagaagaactgttgcgcttgccactggaagtcaaggaggacgatgatctagcaaaagctgccgctgaagcagctgatggaaggccagtttactgcagagataggtattatcgtgcattggccggtggacagtactgcaaatgggaagacttagttaaataagaggatatatataagtgaagaaagctacagttaaattctgtgattgctcaaaagatctgtacaattgagcctcttcttataattttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="120027" stop="117825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119906" g_stop="119895" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="0.833"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119894" i_stop="119727" i_length="168">
            <donor d_prob="0.831" d_score="0.00"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119726" g_stop="119631" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="109" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119630" i_stop="118792" i_length="839">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118791" g_stop="118756" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="145" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="118755" i_stop="118643" i_length="113">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.334" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118642" g_stop="118461" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="327" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="118460" i_stop="118384" i_length="77">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="118383" g_stop="118125" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="586" r_length="259" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E738415" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119906" e_stop="119895"/>
          <exon e_start="119726" e_stop="119631"/>
          <exon e_start="118791" e_stop="118756"/>
          <exon e_start="118642" e_stop="118461"/>
          <exon e_start="118383" e_stop="118125"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGA-ATTTATCTGGTAAAGTTCTTCAATTGCAGGACTTCAATTTTTTGGTCAAATCATTTAGATCACATTCAATCAATGACCATAATAGGGATAGGAGCTCCGCTGGAGATAGATAATTTGAGAACTTAACTTCTCTAATATTCTACGTAACATTCTAATTCCTGACAATGACCACAATAGGGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAGGTTAGTGGTCTTTCCTTTGCATACTTATTTAACAGGTTCTTTCTCTTTGCTTCCTCTGTTCCTCCTCATTCCCACAGTAGGAAAATATTGCCAGCTTCAAAATGGATAAATTAGCTTCAATCCAGTTCACTAAAATAGGTCATTTATACTAGTTACATCAAGCACATCTAAGTAAAGTAAGTCAAGTTGAACTCTTTTGTTAAAAAAAGAAGGTTAACAATATGAACTTTAATCATTGACAAACTGAATCTAACAAGTGCTCATGGATATGAAGAATACATAGCTAGCAACAAGGGGGAAATGGTGTAATATTGCTTGACAAGAATTGTATCACATAATAGATAAGAGCAAGCGCCCAGAGCCCTAACGACTAACAGTGAGGTGAAAATGGTCCAATATAGCATGAAATGGACTTAAAATTTGGTATCACAAATAAAACGCGGGAAATGAAGCTACATGTGAAAGCAATAAGTTGTACTTCCTTGTGTTGGTTAAATCATCAGTCCTTGCACAATACCCTTTTCTTCTTAGCACAAACAGCTATACTAAAGATTTCAATAAAATAGGTTCTTACTTTTCATGGTATAGAAATGTAGTTATCTTTCCGTGAAACTTTGAGCAACAGATCTTCTAGAAAGTAATAGCATTATCTTTTACAATAACACTACATGATGGAACAACGTCTATACATGAAGCTAATATTAGTTCCGCACTTGTAATAATTCATGCTCTAAAAGTCTATAGCCACCTGCACTTCTTGAAAAATTTATCAGAATCCAAGCTCTAAAAGTCTGTAATGATGTTGCACGTATGACATTTAATGTGATTATTCCTTGCAGATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAGGTACCAGATTGATCTATAAAATTCATCAGCTGGTTACATCATATTCTAACTGTCAATAGAGTAGATCTTTCCTATTACGAGCTTGACAAAGCTGAAAGAATTTATTTACCTAGGTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAGGTAATTCTATTGAAAACTTAAGAAGTACAATACTATAAAATTTCATGAGCTTACGTTGTTTCGCTATGTAATTAAAGGAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGATGGAAGGCCAGTTTACTGCAGAGATAGGTATTATCGTGCATTGGCCGGTGGACAGTACTGCAAATGGGAAGACTTAGTTAAATAAGAGGATATATATAAGTGAAGAAAGCTACAGTTAAATTCTGTGATTGCTCAAAAGATCTGTACAATTGAGCCTCTTCTTATAATTTTAACGAAGAAA</genome_strand>
        <mrna_strand>AGATATTTATCTG........................................................................................................................................................................GGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAG.................................................................................................................GTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAG.............................................................................GAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGATGGAAGGCCAGTTTACTGCAGAGATAGGTATTATCGTGCATTGGCCGGTGGACAGTACTGCAAATGGGAAGACTTAGTTAAATAAGAGGATATATATAAGTGAAGAAAGCTACAGTTAAATTCTGTGATTGCTCAAAAGATCTGTACAATTGAGCCTCTTCTTATAATTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E740199" ref_strand="+" ref_description="SGN-E740199 [LC20BH04]">
      <seq>agattttatctgggatggagctatgttggagataggcttttatcagcagttataccttatgaagagactggatggtatgatgggcagatgtgggtgaagcccccagagatcttagctcgggataggctgttgggatcttataaggtgaaaccagtcattaaaatgctgaagcaaacgctagttggaacaggggctttgcttgttgcagcagtctcattattcatatttgcaacaccagtagaagattttttccgcaatactttcacaacaaacgagaactcattgagttccacctcaacaaacagcacaaataaactaggcatcaggaaagaagaactgttgcgcttgccactggaagtcaaggaggacgatgatctagcaaaagctgccgctgaagcagctgatggaaggccagtttactgcagagataggtattatcgtgcattggccggtggacagtactgcaaatgggaagacttagttaaataagaggatatatataagtgaagaaagctacagttaaattctgtgattgctcaaaagatctgtacaattgagcctcttcttataattttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="120027" stop="117825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119906" g_stop="119895" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119894" i_stop="119727" i_length="168">
            <donor d_prob="0.831" d_score="0.00"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119726" g_stop="119631" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="108" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119630" i_stop="118792" i_length="839">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118791" g_stop="118756" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="144" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="118755" i_stop="118643" i_length="113">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.334" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118642" g_stop="118461" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="326" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="118460" i_stop="118384" i_length="77">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="118383" g_stop="118125" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="585" r_length="259" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E740199" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119906" e_stop="119895"/>
          <exon e_start="119726" e_stop="119631"/>
          <exon e_start="118791" e_stop="118756"/>
          <exon e_start="118642" e_stop="118461"/>
          <exon e_start="118383" e_stop="118125"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATTTATCTGGTAAAGTTCTTCAATTGCAGGACTTCAATTTTTTGGTCAAATCATTTAGATCACATTCAATCAATGACCATAATAGGGATAGGAGCTCCGCTGGAGATAGATAATTTGAGAACTTAACTTCTCTAATATTCTACGTAACATTCTAATTCCTGACAATGACCACAATAGGGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAGGTTAGTGGTCTTTCCTTTGCATACTTATTTAACAGGTTCTTTCTCTTTGCTTCCTCTGTTCCTCCTCATTCCCACAGTAGGAAAATATTGCCAGCTTCAAAATGGATAAATTAGCTTCAATCCAGTTCACTAAAATAGGTCATTTATACTAGTTACATCAAGCACATCTAAGTAAAGTAAGTCAAGTTGAACTCTTTTGTTAAAAAAAGAAGGTTAACAATATGAACTTTAATCATTGACAAACTGAATCTAACAAGTGCTCATGGATATGAAGAATACATAGCTAGCAACAAGGGGGAAATGGTGTAATATTGCTTGACAAGAATTGTATCACATAATAGATAAGAGCAAGCGCCCAGAGCCCTAACGACTAACAGTGAGGTGAAAATGGTCCAATATAGCATGAAATGGACTTAAAATTTGGTATCACAAATAAAACGCGGGAAATGAAGCTACATGTGAAAGCAATAAGTTGTACTTCCTTGTGTTGGTTAAATCATCAGTCCTTGCACAATACCCTTTTCTTCTTAGCACAAACAGCTATACTAAAGATTTCAATAAAATAGGTTCTTACTTTTCATGGTATAGAAATGTAGTTATCTTTCCGTGAAACTTTGAGCAACAGATCTTCTAGAAAGTAATAGCATTATCTTTTACAATAACACTACATGATGGAACAACGTCTATACATGAAGCTAATATTAGTTCCGCACTTGTAATAATTCATGCTCTAAAAGTCTATAGCCACCTGCACTTCTTGAAAAATTTATCAGAATCCAAGCTCTAAAAGTCTGTAATGATGTTGCACGTATGACATTTAATGTGATTATTCCTTGCAGATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAGGTACCAGATTGATCTATAAAATTCATCAGCTGGTTACATCATATTCTAACTGTCAATAGAGTAGATCTTTCCTATTACGAGCTTGACAAAGCTGAAAGAATTTATTTACCTAGGTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAGGTAATTCTATTGAAAACTTAAGAAGTACAATACTATAAAATTTCATGAGCTTACGTTGTTTCGCTATGTAATTAAAGGAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGATGGAAGGCCAGTTTACTGCAGAGATAGGTATTATCGTGCATTGGCCGGTGGACAGTACTGCAAATGGGAAGACTTAGTTAAATAAGAGGATATATATAAGTGAAGAAAGCTACAGTTAAATTCTGTGATTGCTCAAAAGATCTGTACAATTGAGCCTCTTCTTATAATTTTAACGAAGAAA</genome_strand>
        <mrna_strand>AGATTTTATCTG........................................................................................................................................................................GGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAG.................................................................................................................GTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAG.............................................................................GAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGATGGAAGGCCAGTTTACTGCAGAGATAGGTATTATCGTGCATTGGCCGGTGGACAGTACTGCAAATGGGAAGACTTAGTTAAATAAGAGGATATATATAAGTGAAGAAAGCTACAGTTAAATTCTGTGATTGCTCAAAAGATCTGTACAATTGAGCCTCTTCTTATAATTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728507" ref_strand="+" ref_description="SGN-E728507 [LA18AC03]">
      <seq>gccgctcgtggatcattttatcgaacaaagcaacgattgtatgtcggaggaacattcgagttaaagccctgaaagatgggatgaacggtggcacgaatggcagtggattaggtggtcgtagttgggacccaggcttggaaattgaggtgccatttgaacaaaggccggtgaatgagtactcatctctgaaagatgaaactttatactcttgggcagaactgggtccaggggccttcttcctacgtctcgggggactttggttagtcactttcgcagttttgggagtacctattgctgctgcaagcttcaatccttcaaaggatcctttaagatttctcctggctgcaagtacggggactctttttcttgttgcactgattgtcctaagaatttatctgggatggagctatgttggagataggcttttatcagcagttataccttatgaagagactggatggtatgatgggcagatgtgggtgaagcccccagagatcttagctcgggataggctgttgggatcttataaggtgaaaccagtcattaaaatgctgaagcaaacgctagttggaacaggggctttgcttgttgcagcagtctcattattcatatttgcaacaccagtagaagattttttccgcaatactttcacaacaaacgagaactcattgagttccacctcaacaaacagcacaaataaactaggcatcaggaaagaagaactgttgcgcttgccactggaagtcaaggaggacgatgatctagcaaaagctgccgctgaagcagctgatggaaggccagtttactgcagagataagtattatcgtgcattggccggtggacagtactgcaaatggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="121253" stop="117937"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120953" g_stop="120787" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120786" i_stop="120302" i_length="485">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.115" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120301" g_stop="120149" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="320" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120148" i_stop="119973" i_length="176">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119972" g_stop="119895" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="398" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119894" i_stop="119727" i_length="168">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119726" g_stop="119631" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="494" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="119630" i_stop="118792" i_length="839">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="118791" g_stop="118756" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="530" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="118755" i_stop="118643" i_length="113">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.334" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="118642" g_stop="118461" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="712" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="118460" i_stop="118384" i_length="77">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="118383" g_stop="118237" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="713" r_stop="859" r_length="147" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E728507" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>859</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728507" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120953" e_stop="120787"/>
          <exon e_start="120301" e_stop="120149"/>
          <exon e_start="119972" e_stop="119895"/>
          <exon e_start="119726" e_stop="119631"/>
          <exon e_start="118791" e_stop="118756"/>
          <exon e_start="118642" e_stop="118461"/>
          <exon e_start="118383" e_stop="118237"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCGGTATGTTCTCAATTCTTTGTATTCATTCCTGGCCTCATCCATTTGATCCAATCTGCAGAAATCAATAGAAAAGACTCATCTCAGTTCACATACTAGTTTAGATTTATACACTATTACTCTGATAGTGTAAAGATTTTATATGCTGTTCTTATTGTCCCACTTGTGATAGAACTTTTCTTTAGCTTAATCATAGAGATTGGTTTGCAATCTCCCTATAACTGACCTGGTTCTGTAAATATTCTTACACTCTCAGTGTAAAAAACTTAAAACTAGTCCTGAGAAGGCCACAAGATCTGCACAGATGAGACATGCCATTATACGATAAACTTCTAATGCAGGTTATAGGATTATTGAAATGATAAAACTGACTCAGTAAATTACTTTTCAACATGTACTAAATTTCTGAAGTTCCATAAGGACGGAGGACTTGATATGGAGATGGGTGAGCAATTTAAAGTATTAACTAAGCTAGTGCTTTTTACCAGGTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAGGTAAATTGTTAACTTTGTGCAAGTTCTTTCTCTCAGGAGAGTTCCAAAGTGATTACTCAAGTGTCAATAGTAAACAAAGAGCTTTCGTTTTCTTTCTTCATTTATTTCTAAGTCAAAAATAAAATCAAAGAATCCTCACAATCATTGACATTCAATTTTTCATAATCCTCCTGCAGGATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTGGTAAAGTTCTTCAATTGCAGGACTTCAATTTTTTGGTCAAATCATTTAGATCACATTCAATCAATGACCATAATAGGGATAGGAGCTCCGCTGGAGATAGATAATTTGAGAACTTAACTTCTCTAATATTCTACGTAACATTCTAATTCCTGACAATGACCACAATAGGGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAGGTTAGTGGTCTTTCCTTTGCATACTTATTTAACAGGTTCTTTCTCTTTGCTTCCTCTGTTCCTCCTCATTCCCACAGTAGGAAAATATTGCCAGCTTCAAAATGGATAAATTAGCTTCAATCCAGTTCACTAAAATAGGTCATTTATACTAGTTACATCAAGCACATCTAAGTAAAGTAAGTCAAGTTGAACTCTTTTGTTAAAAAAAGAAGGTTAACAATATGAACTTTAATCATTGACAAACTGAATCTAACAAGTGCTCATGGATATGAAGAATACATAGCTAGCAACAAGGGGGAAATGGTGTAATATTGCTTGACAAGAATTGTATCACATAATAGATAAGAGCAAGCGCCCAGAGCCCTAACGACTAACAGTGAGGTGAAAATGGTCCAATATAGCATGAAATGGACTTAAAATTTGGTATCACAAATAAAACGCGGGAAATGAAGCTACATGTGAAAGCAATAAGTTGTACTTCCTTGTGTTGGTTAAATCATCAGTCCTTGCACAATACCCTTTTCTTCTTAGCACAAACAGCTATACTAAAGATTTCAATAAAATAGGTTCTTACTTTTCATGGTATAGAAATGTAGTTATCTTTCCGTGAAACTTTGAGCAACAGATCTTCTAGAAAGTAATAGCATTATCTTTTACAATAACACTACATGATGGAACAACGTCTATACATGAAGCTAATATTAGTTCCGCACTTGTAATAATTCATGCTCTAAAAGTCTATAGCCACCTGCACTTCTTGAAAAATTTATCAGAATCCAAGCTCTAAAAGTCTGTAATGATGTTGCACGTATGACATTTAATGTGATTATTCCTTGCAGATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAGGTACCAGATTGATCTATAAAATTCATCAGCTGGTTACATCATATTCTAACTGTCAATAGAGTAGATCTTTCCTATTACGAGCTTGACAAAGCTGAAAGAATTTATTTACCTAGGTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAGGTAATTCTATTGAAAACTTAAGAAGTACAATACTATAAAATTTCATGAGCTTACGTTGTTTCGCTATGTAATTAAAGGAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGATGGAAGGCCAGTTTACTGCAGAGATAGGTATTATCGTGCATTGGCCGGTGGACAGTACTGCAAATGGGA</genome_strand>
        <mrna_strand>GCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAG................................................................................................................................................................................GATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTG........................................................................................................................................................................GGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAG.................................................................................................................GTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAG.............................................................................GAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGATGGAAGGCCAGTTTACTGCAGAGATAAGTATTATCGTGCATTGGCCGGTGGACAGTACTGCAAATGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E733822" ref_strand="+" ref_description="SGN-E733822 [LB11AB09]">
      <seq>ctcattttatcgaacaaagcaacgattgtatgtcggaggaacattcgagttaaagccctgaaagatgggatgaacggtggcacgaatggcagtggattaggtggtcgtagttgggacccaggcttggaaattgaggtgccatttgaacaaaggccggtgaatgagtactcatctctgaaagatgaaactttatactcttgggcagaactgggtccaggggccttcttcctacgtctcgggggactttggttagtcactttcgcagttttgggagtacctattgctgctgcaagcttcaatccttcaaaggatcctttaagatttctcctggctgcaagtacggggactctttttcttgttgcactgattgtcctaagaatttatctgggatggagctatgttggagataggcttttatcagcagttataccttatgaagagactggatggtatgatgggcagatgtgggtgaagcccccagagatcttagctcgggataggctgttgggatcttataaggtgaaaccagtcattaaaatgctgaagcaaacgctagttggaacaggggctttgcttgttgcagcagtctcattattcatatttgcaacaccagtagaagattttttccgcaatactttcacaacaaacgagaactcattgagttccacctcaacaaacagcacaaataaactaggcatcaggaaagaagaactgttgcgcttgccactggaagtcaaggaggacgatgatctagcaaaagctgccgctgaagcagctgatggaaggccagtttactgcagagataggtattatcgtgcattgggcggtggacagtactgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="121241" stop="117943"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120942" g_stop="120787" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120786" i_stop="120302" i_length="485">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.115" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120301" g_stop="120149" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="309" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120148" i_stop="119973" i_length="176">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119972" g_stop="119895" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="387" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119894" i_stop="119727" i_length="168">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119726" g_stop="119631" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="483" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="119630" i_stop="118792" i_length="839">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="118791" g_stop="118756" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="519" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="118755" i_stop="118643" i_length="113">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.334" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="118642" g_stop="118461" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="701" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="118460" i_stop="118384" i_length="77">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="118383" g_stop="118243" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="702" r_stop="842" r_length="141" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E733822" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>842</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733822" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120942" e_stop="120787"/>
          <exon e_start="120301" e_stop="120149"/>
          <exon e_start="119972" e_stop="119895"/>
          <exon e_start="119726" e_stop="119631"/>
          <exon e_start="118791" e_stop="118756"/>
          <exon e_start="118642" e_stop="118461"/>
          <exon e_start="118383" e_stop="118243"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCGGTATGTTCTCAATTCTTTGTATTCATTCCTGGCCTCATCCATTTGATCCAATCTGCAGAAATCAATAGAAAAGACTCATCTCAGTTCACATACTAGTTTAGATTTATACACTATTACTCTGATAGTGTAAAGATTTTATATGCTGTTCTTATTGTCCCACTTGTGATAGAACTTTTCTTTAGCTTAATCATAGAGATTGGTTTGCAATCTCCCTATAACTGACCTGGTTCTGTAAATATTCTTACACTCTCAGTGTAAAAAACTTAAAACTAGTCCTGAGAAGGCCACAAGATCTGCACAGATGAGACATGCCATTATACGATAAACTTCTAATGCAGGTTATAGGATTATTGAAATGATAAAACTGACTCAGTAAATTACTTTTCAACATGTACTAAATTTCTGAAGTTCCATAAGGACGGAGGACTTGATATGGAGATGGGTGAGCAATTTAAAGTATTAACTAAGCTAGTGCTTTTTACCAGGTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAGGTAAATTGTTAACTTTGTGCAAGTTCTTTCTCTCAGGAGAGTTCCAAAGTGATTACTCAAGTGTCAATAGTAAACAAAGAGCTTTCGTTTTCTTTCTTCATTTATTTCTAAGTCAAAAATAAAATCAAAGAATCCTCACAATCATTGACATTCAATTTTTCATAATCCTCCTGCAGGATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTGGTAAAGTTCTTCAATTGCAGGACTTCAATTTTTTGGTCAAATCATTTAGATCACATTCAATCAATGACCATAATAGGGATAGGAGCTCCGCTGGAGATAGATAATTTGAGAACTTAACTTCTCTAATATTCTACGTAACATTCTAATTCCTGACAATGACCACAATAGGGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAGGTTAGTGGTCTTTCCTTTGCATACTTATTTAACAGGTTCTTTCTCTTTGCTTCCTCTGTTCCTCCTCATTCCCACAGTAGGAAAATATTGCCAGCTTCAAAATGGATAAATTAGCTTCAATCCAGTTCACTAAAATAGGTCATTTATACTAGTTACATCAAGCACATCTAAGTAAAGTAAGTCAAGTTGAACTCTTTTGTTAAAAAAAGAAGGTTAACAATATGAACTTTAATCATTGACAAACTGAATCTAACAAGTGCTCATGGATATGAAGAATACATAGCTAGCAACAAGGGGGAAATGGTGTAATATTGCTTGACAAGAATTGTATCACATAATAGATAAGAGCAAGCGCCCAGAGCCCTAACGACTAACAGTGAGGTGAAAATGGTCCAATATAGCATGAAATGGACTTAAAATTTGGTATCACAAATAAAACGCGGGAAATGAAGCTACATGTGAAAGCAATAAGTTGTACTTCCTTGTGTTGGTTAAATCATCAGTCCTTGCACAATACCCTTTTCTTCTTAGCACAAACAGCTATACTAAAGATTTCAATAAAATAGGTTCTTACTTTTCATGGTATAGAAATGTAGTTATCTTTCCGTGAAACTTTGAGCAACAGATCTTCTAGAAAGTAATAGCATTATCTTTTACAATAACACTACATGATGGAACAACGTCTATACATGAAGCTAATATTAGTTCCGCACTTGTAATAATTCATGCTCTAAAAGTCTATAGCCACCTGCACTTCTTGAAAAATTTATCAGAATCCAAGCTCTAAAAGTCTGTAATGATGTTGCACGTATGACATTTAATGTGATTATTCCTTGCAGATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAGGTACCAGATTGATCTATAAAATTCATCAGCTGGTTACATCATATTCTAACTGTCAATAGAGTAGATCTTTCCTATTACGAGCTTGACAAAGCTGAAAGAATTTATTTACCTAGGTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAGGTAATTCTATTGAAAACTTAAGAAGTACAATACTATAAAATTTCATGAGCTTACGTTGTTTCGCTATGTAATTAAAGGAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGATGGAAGGCCAGTTTACTGCAGAGATAGGTATTATCGTGCATTGGCCGGTGGACAGTACTGCAA</genome_strand>
        <mrna_strand>CTCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAG................................................................................................................................................................................GATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTG........................................................................................................................................................................GGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAG.................................................................................................................GTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAG.............................................................................GAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGATGGAAGGCCAGTTTACTGCAGAGATAGGTATTATCGTGCATTGGGCGGTGGACAGTACTGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E740443" ref_strand="+" ref_description="SGN-E740443 [LC21BH02]">
      <seq>ccgataattcacaaatgctaaggctaaatttatatggctccatagtttctagtccgatagaagtcaacaaaagctgccgctcgtggatcattttatcgaacaaagcaacgattgtatgtcggaggaacattcgagttaaagccctgaaagatgggatgaacggtggcacgaatggcagtggattaggtggtcgtagttgggacccaggcttggaaattgaggtgccatttgaacaaaggccggtgaatgagtactcatctctgaaagatgaaactttatactcttgggcagaactgggtccaggggccttcttcctacgtctcgggggactttggttagtcactttcgcagttttgggagtacctattgctgctgcaagcttcaatccttcaaaggatcctttaagatttctcctggctgcaagtacggggactctttttcttgttgcactgattgtcctaagaatttatctgggatggagctatgttggagataggcttttatcagcagttataccttatgaagagactggatggtatgatgggcagatgtgggtgaagcccccagagatcttagctcgggataggctgttgggatcttataaggtgaaaccagtcattaaaatgctgaagcaaacgctagttggaacaggggctttgcttgttgcagcagtctcattattcatatttgcaacaccagtagaagattttttccgcaatactttcacaacaaacgagaactcattgagttccacctcaacaaacagcacaaataaactaggcatcaggaaagaagaactgttgcgcttgccactggaagtcaaggaggacgatgatctagcaaaagctgccgctgaagcagctgatgggaggccagtttactgcagagataggtattatcgtgcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="121326" stop="117964"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121028" g_stop="120787" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120786" i_stop="120302" i_length="485">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.115" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120301" g_stop="120149" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="395" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120148" i_stop="119973" i_length="176">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119972" g_stop="119895" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="473" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119894" i_stop="119727" i_length="168">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119726" g_stop="119631" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="569" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="119630" i_stop="118792" i_length="839">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="118791" g_stop="118756" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="605" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="118755" i_stop="118643" i_length="113">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.334" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="118642" g_stop="118461" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="606" r_stop="787" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="118460" i_stop="118384" i_length="77">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="118383" g_stop="118264" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="788" r_stop="907" r_length="120" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E740443" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>907</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740443" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121028" e_stop="120787"/>
          <exon e_start="120301" e_stop="120149"/>
          <exon e_start="119972" e_stop="119895"/>
          <exon e_start="119726" e_stop="119631"/>
          <exon e_start="118791" e_stop="118756"/>
          <exon e_start="118642" e_stop="118461"/>
          <exon e_start="118383" e_stop="118264"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCGGTATGTTCTCAATTCTTTGTATTCATTCCTGGCCTCATCCATTTGATCCAATCTGCAGAAATCAATAGAAAAGACTCATCTCAGTTCACATACTAGTTTAGATTTATACACTATTACTCTGATAGTGTAAAGATTTTATATGCTGTTCTTATTGTCCCACTTGTGATAGAACTTTTCTTTAGCTTAATCATAGAGATTGGTTTGCAATCTCCCTATAACTGACCTGGTTCTGTAAATATTCTTACACTCTCAGTGTAAAAAACTTAAAACTAGTCCTGAGAAGGCCACAAGATCTGCACAGATGAGACATGCCATTATACGATAAACTTCTAATGCAGGTTATAGGATTATTGAAATGATAAAACTGACTCAGTAAATTACTTTTCAACATGTACTAAATTTCTGAAGTTCCATAAGGACGGAGGACTTGATATGGAGATGGGTGAGCAATTTAAAGTATTAACTAAGCTAGTGCTTTTTACCAGGTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAGGTAAATTGTTAACTTTGTGCAAGTTCTTTCTCTCAGGAGAGTTCCAAAGTGATTACTCAAGTGTCAATAGTAAACAAAGAGCTTTCGTTTTCTTTCTTCATTTATTTCTAAGTCAAAAATAAAATCAAAGAATCCTCACAATCATTGACATTCAATTTTTCATAATCCTCCTGCAGGATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTGGTAAAGTTCTTCAATTGCAGGACTTCAATTTTTTGGTCAAATCATTTAGATCACATTCAATCAATGACCATAATAGGGATAGGAGCTCCGCTGGAGATAGATAATTTGAGAACTTAACTTCTCTAATATTCTACGTAACATTCTAATTCCTGACAATGACCACAATAGGGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAGGTTAGTGGTCTTTCCTTTGCATACTTATTTAACAGGTTCTTTCTCTTTGCTTCCTCTGTTCCTCCTCATTCCCACAGTAGGAAAATATTGCCAGCTTCAAAATGGATAAATTAGCTTCAATCCAGTTCACTAAAATAGGTCATTTATACTAGTTACATCAAGCACATCTAAGTAAAGTAAGTCAAGTTGAACTCTTTTGTTAAAAAAAGAAGGTTAACAATATGAACTTTAATCATTGACAAACTGAATCTAACAAGTGCTCATGGATATGAAGAATACATAGCTAGCAACAAGGGGGAAATGGTGTAATATTGCTTGACAAGAATTGTATCACATAATAGATAAGAGCAAGCGCCCAGAGCCCTAACGACTAACAGTGAGGTGAAAATGGTCCAATATAGCATGAAATGGACTTAAAATTTGGTATCACAAATAAAACGCGGGAAATGAAGCTACATGTGAAAGCAATAAGTTGTACTTCCTTGTGTTGGTTAAATCATCAGTCCTTGCACAATACCCTTTTCTTCTTAGCACAAACAGCTATACTAAAGATTTCAATAAAATAGGTTCTTACTTTTCATGGTATAGAAATGTAGTTATCTTTCCGTGAAACTTTGAGCAACAGATCTTCTAGAAAGTAATAGCATTATCTTTTACAATAACACTACATGATGGAACAACGTCTATACATGAAGCTAATATTAGTTCCGCACTTGTAATAATTCATGCTCTAAAAGTCTATAGCCACCTGCACTTCTTGAAAAATTTATCAGAATCCAAGCTCTAAAAGTCTGTAATGATGTTGCACGTATGACATTTAATGTGATTATTCCTTGCAGATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAGGTACCAGATTGATCTATAAAATTCATCAGCTGGTTACATCATATTCTAACTGTCAATAGAGTAGATCTTTCCTATTACGAGCTTGACAAAGCTGAAAGAATTTATTTACCTAGGTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAGGTAATTCTATTGAAAACTTAAGAAGTACAATACTATAAAATTTCATGAGCTTACGTTGTTTCGCTATGTAATTAAAGGAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGATGGAAGGCCAGTTTACTGCAGAGATAGGTATTATCGTGCATT</genome_strand>
        <mrna_strand>CCGATAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAG................................................................................................................................................................................GATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTG........................................................................................................................................................................GGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAG.................................................................................................................GTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAG.............................................................................GAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGATGGGAGGCCAGTTTACTGCAGAGATAGGTATTATCGTGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E735669" ref_strand="+" ref_description="SGN-E735669 [LC02CB06]">
      <seq>aatttatatggctccatagtttctagtccgatagaagtcaacaaaagctgccgctcgtggatcattttatcgaacaaagcaacgattgtatgtcggaggaacattcgagttaaagccctgaaagatgggatgaacggtggcacgaatggcagtggattaggtggtcgtagttgggacccaggcttggaaattgaggtgccatttgaacaaaggccggtgaatgagtactcatctctgaaagatgaaactttatactcttgggcagaactgggtccaggggccttcttcctacgtctcgggggactttggttagtcactttcgcagttttgggagtacctattgctgctgcaagcttcaatccttcaaaggatcctttaagatttctcctggctgcaagtacggggactctttttcttgttgcactgattgtcctaagaatttatctgggatggagctatgttggagataggcttttatcagcagttataccttatgaagagactggatggtatgatgggcagatgtgggtgaagcccccagagatcttagctcgggataggctgttgggatcttataaggtgaaaccagtcattaaaatgctgaagcaaacgctagttggaacaggggctttgcttgttgcagcagtctcattattcatatttgcaacaccagtagaagattttttccgcaatactttcacaacaaacgagaactcattgagttccacctcaacaaacagcacaaataaactaggcatcaggaaagaagaactgttgcgcttgccactggaagtcaaggaggacgatgatctagcaaaagctgccgctgaagcagctgatgggaggccagtttactgcaaagataggtattatcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="121302" stop="117969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121002" g_stop="120787" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120786" i_stop="120302" i_length="485">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.115" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120301" g_stop="120149" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="369" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120148" i_stop="119973" i_length="176">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119972" g_stop="119895" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="447" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119894" i_stop="119727" i_length="168">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119726" g_stop="119631" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="543" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="119630" i_stop="118792" i_length="839">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="118791" g_stop="118756" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="579" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="118755" i_stop="118643" i_length="113">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.334" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="118642" g_stop="118461" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="761" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="118460" i_stop="118384" i_length="77">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="118383" g_stop="118269" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="762" r_stop="876" r_length="115" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E735669" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>876</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121002" e_stop="120787"/>
          <exon e_start="120301" e_stop="120149"/>
          <exon e_start="119972" e_stop="119895"/>
          <exon e_start="119726" e_stop="119631"/>
          <exon e_start="118791" e_stop="118756"/>
          <exon e_start="118642" e_stop="118461"/>
          <exon e_start="118383" e_stop="118269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCGGTATGTTCTCAATTCTTTGTATTCATTCCTGGCCTCATCCATTTGATCCAATCTGCAGAAATCAATAGAAAAGACTCATCTCAGTTCACATACTAGTTTAGATTTATACACTATTACTCTGATAGTGTAAAGATTTTATATGCTGTTCTTATTGTCCCACTTGTGATAGAACTTTTCTTTAGCTTAATCATAGAGATTGGTTTGCAATCTCCCTATAACTGACCTGGTTCTGTAAATATTCTTACACTCTCAGTGTAAAAAACTTAAAACTAGTCCTGAGAAGGCCACAAGATCTGCACAGATGAGACATGCCATTATACGATAAACTTCTAATGCAGGTTATAGGATTATTGAAATGATAAAACTGACTCAGTAAATTACTTTTCAACATGTACTAAATTTCTGAAGTTCCATAAGGACGGAGGACTTGATATGGAGATGGGTGAGCAATTTAAAGTATTAACTAAGCTAGTGCTTTTTACCAGGTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAGGTAAATTGTTAACTTTGTGCAAGTTCTTTCTCTCAGGAGAGTTCCAAAGTGATTACTCAAGTGTCAATAGTAAACAAAGAGCTTTCGTTTTCTTTCTTCATTTATTTCTAAGTCAAAAATAAAATCAAAGAATCCTCACAATCATTGACATTCAATTTTTCATAATCCTCCTGCAGGATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTGGTAAAGTTCTTCAATTGCAGGACTTCAATTTTTTGGTCAAATCATTTAGATCACATTCAATCAATGACCATAATAGGGATAGGAGCTCCGCTGGAGATAGATAATTTGAGAACTTAACTTCTCTAATATTCTACGTAACATTCTAATTCCTGACAATGACCACAATAGGGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAGGTTAGTGGTCTTTCCTTTGCATACTTATTTAACAGGTTCTTTCTCTTTGCTTCCTCTGTTCCTCCTCATTCCCACAGTAGGAAAATATTGCCAGCTTCAAAATGGATAAATTAGCTTCAATCCAGTTCACTAAAATAGGTCATTTATACTAGTTACATCAAGCACATCTAAGTAAAGTAAGTCAAGTTGAACTCTTTTGTTAAAAAAAGAAGGTTAACAATATGAACTTTAATCATTGACAAACTGAATCTAACAAGTGCTCATGGATATGAAGAATACATAGCTAGCAACAAGGGGGAAATGGTGTAATATTGCTTGACAAGAATTGTATCACATAATAGATAAGAGCAAGCGCCCAGAGCCCTAACGACTAACAGTGAGGTGAAAATGGTCCAATATAGCATGAAATGGACTTAAAATTTGGTATCACAAATAAAACGCGGGAAATGAAGCTACATGTGAAAGCAATAAGTTGTACTTCCTTGTGTTGGTTAAATCATCAGTCCTTGCACAATACCCTTTTCTTCTTAGCACAAACAGCTATACTAAAGATTTCAATAAAATAGGTTCTTACTTTTCATGGTATAGAAATGTAGTTATCTTTCCGTGAAACTTTGAGCAACAGATCTTCTAGAAAGTAATAGCATTATCTTTTACAATAACACTACATGATGGAACAACGTCTATACATGAAGCTAATATTAGTTCCGCACTTGTAATAATTCATGCTCTAAAAGTCTATAGCCACCTGCACTTCTTGAAAAATTTATCAGAATCCAAGCTCTAAAAGTCTGTAATGATGTTGCACGTATGACATTTAATGTGATTATTCCTTGCAGATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAGGTACCAGATTGATCTATAAAATTCATCAGCTGGTTACATCATATTCTAACTGTCAATAGAGTAGATCTTTCCTATTACGAGCTTGACAAAGCTGAAAGAATTTATTTACCTAGGTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAGGTAATTCTATTGAAAACTTAAGAAGTACAATACTATAAAATTTCATGAGCTTACGTTGTTTCGCTATGTAATTAAAGGAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGATGGAAGGCCAGTTTACTGCAGAGATAGGTATTATCGT</genome_strand>
        <mrna_strand>AATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAG................................................................................................................................................................................GATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTG........................................................................................................................................................................GGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAG.................................................................................................................GTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAG.............................................................................GAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGATGGGAGGCCAGTTTACTGCAAAGATAGGTATTATCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726596" ref_strand="+" ref_description="SGN-E726596 [LA12BB06]">
      <seq>cacaaatgctaaggctaaatttatatggctccatagtttctagtccgatagaagtcaacaaaagctgccgctcgtggatcattttatcgaacaaagcaacgattgtatgtcggaggaacattcgagttaaagccctgaaagatgggatgaacggtggcacgaatggcagtggattaggtggtcgtagttgggacccaggcttggaaattgaggtgccatttgaacaaaggccggtgaatgagtactcatctctgaaagatgaaactttatactcttgggcagaactgggtccaggggccttcttcctacgtctcgggggactttggttagtcactttcgcagttttgggagtacctattgctgctgcaagcttcaatccttcaaaggatcctttaagatttctcctggctgcaagtacggggactctttttcttgttgcactgattgtcctaagaatttatctgggatggagctatgttggagataggcttttatcagcagttataccttatgaagagactggatggtatgatgggcagatgtgggtgaagcccccagagatcttagctcgggataggctgttgggatcttataaggtgaaaccagtcattaaaatgctgaagcaaacgctagttggaacaggggctttgcttgttgcagcagtctcattattcatatttgcaacaccagtagaagattttttccgcaatactttcacaacaaacgagaactcattgagttccacctcaacaaacagcacaaataaactaggcatcaggaaagaagaactgttgcgcttgccactggaagtcaaggaggacgatgatctagcaaaagctgccgctgaagcagctgatggaaagccagtttactgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="121319" stop="117987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121019" g_stop="120787" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120786" i_stop="120302" i_length="485">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.115" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120301" g_stop="120149" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="386" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120148" i_stop="119973" i_length="176">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119972" g_stop="119895" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="464" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119894" i_stop="119727" i_length="168">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119726" g_stop="119631" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="560" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="119630" i_stop="118792" i_length="839">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="118791" g_stop="118756" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="596" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="118755" i_stop="118643" i_length="113">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.334" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="118642" g_stop="118461" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="778" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="118460" i_stop="118384" i_length="77">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="118383" g_stop="118287" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="779" r_stop="875" r_length="97" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E726596" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>875</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121019" e_stop="120787"/>
          <exon e_start="120301" e_stop="120149"/>
          <exon e_start="119972" e_stop="119895"/>
          <exon e_start="119726" e_stop="119631"/>
          <exon e_start="118791" e_stop="118756"/>
          <exon e_start="118642" e_stop="118461"/>
          <exon e_start="118383" e_stop="118287"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCGGTATGTTCTCAATTCTTTGTATTCATTCCTGGCCTCATCCATTTGATCCAATCTGCAGAAATCAATAGAAAAGACTCATCTCAGTTCACATACTAGTTTAGATTTATACACTATTACTCTGATAGTGTAAAGATTTTATATGCTGTTCTTATTGTCCCACTTGTGATAGAACTTTTCTTTAGCTTAATCATAGAGATTGGTTTGCAATCTCCCTATAACTGACCTGGTTCTGTAAATATTCTTACACTCTCAGTGTAAAAAACTTAAAACTAGTCCTGAGAAGGCCACAAGATCTGCACAGATGAGACATGCCATTATACGATAAACTTCTAATGCAGGTTATAGGATTATTGAAATGATAAAACTGACTCAGTAAATTACTTTTCAACATGTACTAAATTTCTGAAGTTCCATAAGGACGGAGGACTTGATATGGAGATGGGTGAGCAATTTAAAGTATTAACTAAGCTAGTGCTTTTTACCAGGTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAGGTAAATTGTTAACTTTGTGCAAGTTCTTTCTCTCAGGAGAGTTCCAAAGTGATTACTCAAGTGTCAATAGTAAACAAAGAGCTTTCGTTTTCTTTCTTCATTTATTTCTAAGTCAAAAATAAAATCAAAGAATCCTCACAATCATTGACATTCAATTTTTCATAATCCTCCTGCAGGATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTGGTAAAGTTCTTCAATTGCAGGACTTCAATTTTTTGGTCAAATCATTTAGATCACATTCAATCAATGACCATAATAGGGATAGGAGCTCCGCTGGAGATAGATAATTTGAGAACTTAACTTCTCTAATATTCTACGTAACATTCTAATTCCTGACAATGACCACAATAGGGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAGGTTAGTGGTCTTTCCTTTGCATACTTATTTAACAGGTTCTTTCTCTTTGCTTCCTCTGTTCCTCCTCATTCCCACAGTAGGAAAATATTGCCAGCTTCAAAATGGATAAATTAGCTTCAATCCAGTTCACTAAAATAGGTCATTTATACTAGTTACATCAAGCACATCTAAGTAAAGTAAGTCAAGTTGAACTCTTTTGTTAAAAAAAGAAGGTTAACAATATGAACTTTAATCATTGACAAACTGAATCTAACAAGTGCTCATGGATATGAAGAATACATAGCTAGCAACAAGGGGGAAATGGTGTAATATTGCTTGACAAGAATTGTATCACATAATAGATAAGAGCAAGCGCCCAGAGCCCTAACGACTAACAGTGAGGTGAAAATGGTCCAATATAGCATGAAATGGACTTAAAATTTGGTATCACAAATAAAACGCGGGAAATGAAGCTACATGTGAAAGCAATAAGTTGTACTTCCTTGTGTTGGTTAAATCATCAGTCCTTGCACAATACCCTTTTCTTCTTAGCACAAACAGCTATACTAAAGATTTCAATAAAATAGGTTCTTACTTTTCATGGTATAGAAATGTAGTTATCTTTCCGTGAAACTTTGAGCAACAGATCTTCTAGAAAGTAATAGCATTATCTTTTACAATAACACTACATGATGGAACAACGTCTATACATGAAGCTAATATTAGTTCCGCACTTGTAATAATTCATGCTCTAAAAGTCTATAGCCACCTGCACTTCTTGAAAAATTTATCAGAATCCAAGCTCTAAAAGTCTGTAATGATGTTGCACGTATGACATTTAATGTGATTATTCCTTGCAGATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAGGTACCAGATTGATCTATAAAATTCATCAGCTGGTTACATCATATTCTAACTGTCAATAGAGTAGATCTTTCCTATTACGAGCTTGACAAAGCTGAAAGAATTTATTTACCTAGGTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAGGTAATTCTATTGAAAACTTAAGAAGTACAATACTATAAAATTTCATGAGCTTACGTTGTTTCGCTATGTAATTAAAGGAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGATGGAAGGCCAGTTTACTGC</genome_strand>
        <mrna_strand>CACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAG................................................................................................................................................................................GATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTG........................................................................................................................................................................GGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAG.................................................................................................................GTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAG.............................................................................GAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGATGGAAAGCCAGTTTACTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E735421" ref_strand="+" ref_description="SGN-E735421 [LC01CB06]">
      <seq>caatttatatggctccatagtttctagtccgatagaagtcaacaaaagctgccgctcgtggatcattttatcgaacaaagcaacgattgtatgtcggaggaacattcgagttaaagccctgaaagatgggatgaacggtggcacgaatggcagtggattaggtggtcgtagttgggacccaggcttggaaattgaggtgccatttgaacaaaggccggtgaatgagtactcatctctgaaagatgaaactttatactcttgggcagaactgggtccaggggccttcttcctacgtctcgggggactttggttagtcactttcgcagttttgggagtacctattgctgctgcaagcttcaatccttcaaaggatcctttaagatttctcctggctgcaagtacggggactctttttcttgttgcactgattgtcctaagaatttatctgggatggagctatgttggagataggcttttatcagcagttataccttatgaagagactggatggtatgatgggcagatgtgggtgaagcccccagagatcttagctcgggataggctgttgggatcttataaggtgaaaccagtcattaaaatgctgaagcaaacgctagttggaacaggggctttgcttgttgcagcagtctcattattcatatttgcaacaccagtagaagattttttccgcaatactttcacaacaaacgagaactcattgagttccacctcaacaaacagcacaaataaactaggcatcaggaaagaagaactgttgcgcttgccactggaagtcaaggaggacgatgatctagcaaaagctgccgctgaaacagctgatggaaggccagtttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="121302" stop="117989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121003" g_stop="120787" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120786" i_stop="120302" i_length="485">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.115" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120301" g_stop="120149" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="370" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120148" i_stop="119973" i_length="176">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119972" g_stop="119895" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="448" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119894" i_stop="119727" i_length="168">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119726" g_stop="119631" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="544" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="119630" i_stop="118792" i_length="839">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="118791" g_stop="118756" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="580" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="118755" i_stop="118643" i_length="113">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.334" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="118642" g_stop="118461" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="762" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="118460" i_stop="118384" i_length="77">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="118383" g_stop="118289" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="763" r_stop="857" r_length="95" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E735421" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>857</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735421" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121003" e_stop="120787"/>
          <exon e_start="120301" e_stop="120149"/>
          <exon e_start="119972" e_stop="119895"/>
          <exon e_start="119726" e_stop="119631"/>
          <exon e_start="118791" e_stop="118756"/>
          <exon e_start="118642" e_stop="118461"/>
          <exon e_start="118383" e_stop="118289"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCGGTATGTTCTCAATTCTTTGTATTCATTCCTGGCCTCATCCATTTGATCCAATCTGCAGAAATCAATAGAAAAGACTCATCTCAGTTCACATACTAGTTTAGATTTATACACTATTACTCTGATAGTGTAAAGATTTTATATGCTGTTCTTATTGTCCCACTTGTGATAGAACTTTTCTTTAGCTTAATCATAGAGATTGGTTTGCAATCTCCCTATAACTGACCTGGTTCTGTAAATATTCTTACACTCTCAGTGTAAAAAACTTAAAACTAGTCCTGAGAAGGCCACAAGATCTGCACAGATGAGACATGCCATTATACGATAAACTTCTAATGCAGGTTATAGGATTATTGAAATGATAAAACTGACTCAGTAAATTACTTTTCAACATGTACTAAATTTCTGAAGTTCCATAAGGACGGAGGACTTGATATGGAGATGGGTGAGCAATTTAAAGTATTAACTAAGCTAGTGCTTTTTACCAGGTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAGGTAAATTGTTAACTTTGTGCAAGTTCTTTCTCTCAGGAGAGTTCCAAAGTGATTACTCAAGTGTCAATAGTAAACAAAGAGCTTTCGTTTTCTTTCTTCATTTATTTCTAAGTCAAAAATAAAATCAAAGAATCCTCACAATCATTGACATTCAATTTTTCATAATCCTCCTGCAGGATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTGGTAAAGTTCTTCAATTGCAGGACTTCAATTTTTTGGTCAAATCATTTAGATCACATTCAATCAATGACCATAATAGGGATAGGAGCTCCGCTGGAGATAGATAATTTGAGAACTTAACTTCTCTAATATTCTACGTAACATTCTAATTCCTGACAATGACCACAATAGGGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAGGTTAGTGGTCTTTCCTTTGCATACTTATTTAACAGGTTCTTTCTCTTTGCTTCCTCTGTTCCTCCTCATTCCCACAGTAGGAAAATATTGCCAGCTTCAAAATGGATAAATTAGCTTCAATCCAGTTCACTAAAATAGGTCATTTATACTAGTTACATCAAGCACATCTAAGTAAAGTAAGTCAAGTTGAACTCTTTTGTTAAAAAAAGAAGGTTAACAATATGAACTTTAATCATTGACAAACTGAATCTAACAAGTGCTCATGGATATGAAGAATACATAGCTAGCAACAAGGGGGAAATGGTGTAATATTGCTTGACAAGAATTGTATCACATAATAGATAAGAGCAAGCGCCCAGAGCCCTAACGACTAACAGTGAGGTGAAAATGGTCCAATATAGCATGAAATGGACTTAAAATTTGGTATCACAAATAAAACGCGGGAAATGAAGCTACATGTGAAAGCAATAAGTTGTACTTCCTTGTGTTGGTTAAATCATCAGTCCTTGCACAATACCCTTTTCTTCTTAGCACAAACAGCTATACTAAAGATTTCAATAAAATAGGTTCTTACTTTTCATGGTATAGAAATGTAGTTATCTTTCCGTGAAACTTTGAGCAACAGATCTTCTAGAAAGTAATAGCATTATCTTTTACAATAACACTACATGATGGAACAACGTCTATACATGAAGCTAATATTAGTTCCGCACTTGTAATAATTCATGCTCTAAAAGTCTATAGCCACCTGCACTTCTTGAAAAATTTATCAGAATCCAAGCTCTAAAAGTCTGTAATGATGTTGCACGTATGACATTTAATGTGATTATTCCTTGCAGATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAGGTACCAGATTGATCTATAAAATTCATCAGCTGGTTACATCATATTCTAACTGTCAATAGAGTAGATCTTTCCTATTACGAGCTTGACAAAGCTGAAAGAATTTATTTACCTAGGTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAGGTAATTCTATTGAAAACTTAAGAAGTACAATACTATAAAATTTCATGAGCTTACGTTGTTTCGCTATGTAATTAAAGGAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGATGGAAGGCCAGTTTACT</genome_strand>
        <mrna_strand>CAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAG................................................................................................................................................................................GATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTG........................................................................................................................................................................GGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAG.................................................................................................................GTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAG.............................................................................GAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAACAGCTGATGGAAGGCCAGTTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E740389" ref_strand="+" ref_description="SGN-E740389 [LC21AH04]">
      <seq>cgataattcacaaatgctaaggctaaatttatatggctccatagtttctagtccgatagaagtcaacaaaagctgccgctcgtggatcattttatcgaacaaagcaacgattgtatgtcggaggaacattcgagttaaagccctgaaagatgggatgaacggtggcacgaatggcagtggattaggtggtcgtagttgggacccaggcttggaaattgaggtgccatttgaacaaaggccggtgaatgagtactcatctctgaaagatgaaactttatactcttgggcagaactgggtccaggggccttcttcctacgtctcgggggactttggttagtcactttcgcagttttgggagtacctattgctgctgcaagcttcaatccttcaaaggatcctttaagatttctcctggctgcaagtacggggactctttttcttgttgcactgattgtcctaagaatttatctgggatggagctatgttggagataggcttttatcagcagttataccttatgaagagactggatggtatgatgggcagatgtgggtgaagcccccagagatcttagctcgggataggctgttgggatcttataaggtgaaaccagtcattaaaatgctgaagcaaacgctagttggaacaggggctttgcttgttgcagcagtctcattattcatatttgcaacaccagtagaagattttttccgcaatactttcacaacaaacgagaactcattgagttccacctcaacaaacagcacaaataaactaggcatcaggaaagaagaactgttgcgcttgccactggaagtcaggggagacgatgatctagcaaaagctgccgctgaagcagctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="121326" stop="118004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121027" g_stop="120787" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120786" i_stop="120302" i_length="485">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.115" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120301" g_stop="120149" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="394" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120148" i_stop="119973" i_length="176">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119972" g_stop="119895" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="472" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119894" i_stop="119727" i_length="168">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119726" g_stop="119631" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="568" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="119630" i_stop="118792" i_length="839">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="118791" g_stop="118756" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="604" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="118755" i_stop="118643" i_length="113">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.334" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="118642" g_stop="118461" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="605" r_stop="786" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="118460" i_stop="118384" i_length="77">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="118383" g_stop="118304" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="787" r_stop="866" r_length="80" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E740389" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>866</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740389" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121027" e_stop="120787"/>
          <exon e_start="120301" e_stop="120149"/>
          <exon e_start="119972" e_stop="119895"/>
          <exon e_start="119726" e_stop="119631"/>
          <exon e_start="118791" e_stop="118756"/>
          <exon e_start="118642" e_stop="118461"/>
          <exon e_start="118383" e_stop="118304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCGGTATGTTCTCAATTCTTTGTATTCATTCCTGGCCTCATCCATTTGATCCAATCTGCAGAAATCAATAGAAAAGACTCATCTCAGTTCACATACTAGTTTAGATTTATACACTATTACTCTGATAGTGTAAAGATTTTATATGCTGTTCTTATTGTCCCACTTGTGATAGAACTTTTCTTTAGCTTAATCATAGAGATTGGTTTGCAATCTCCCTATAACTGACCTGGTTCTGTAAATATTCTTACACTCTCAGTGTAAAAAACTTAAAACTAGTCCTGAGAAGGCCACAAGATCTGCACAGATGAGACATGCCATTATACGATAAACTTCTAATGCAGGTTATAGGATTATTGAAATGATAAAACTGACTCAGTAAATTACTTTTCAACATGTACTAAATTTCTGAAGTTCCATAAGGACGGAGGACTTGATATGGAGATGGGTGAGCAATTTAAAGTATTAACTAAGCTAGTGCTTTTTACCAGGTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAGGTAAATTGTTAACTTTGTGCAAGTTCTTTCTCTCAGGAGAGTTCCAAAGTGATTACTCAAGTGTCAATAGTAAACAAAGAGCTTTCGTTTTCTTTCTTCATTTATTTCTAAGTCAAAAATAAAATCAAAGAATCCTCACAATCATTGACATTCAATTTTTCATAATCCTCCTGCAGGATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTGGTAAAGTTCTTCAATTGCAGGACTTCAATTTTTTGGTCAAATCATTTAGATCACATTCAATCAATGACCATAATAGGGATAGGAGCTCCGCTGGAGATAGATAATTTGAGAACTTAACTTCTCTAATATTCTACGTAACATTCTAATTCCTGACAATGACCACAATAGGGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAGGTTAGTGGTCTTTCCTTTGCATACTTATTTAACAGGTTCTTTCTCTTTGCTTCCTCTGTTCCTCCTCATTCCCACAGTAGGAAAATATTGCCAGCTTCAAAATGGATAAATTAGCTTCAATCCAGTTCACTAAAATAGGTCATTTATACTAGTTACATCAAGCACATCTAAGTAAAGTAAGTCAAGTTGAACTCTTTTGTTAAAAAAAGAAGGTTAACAATATGAACTTTAATCATTGACAAACTGAATCTAACAAGTGCTCATGGATATGAAGAATACATAGCTAGCAACAAGGGGGAAATGGTGTAATATTGCTTGACAAGAATTGTATCACATAATAGATAAGAGCAAGCGCCCAGAGCCCTAACGACTAACAGTGAGGTGAAAATGGTCCAATATAGCATGAAATGGACTTAAAATTTGGTATCACAAATAAAACGCGGGAAATGAAGCTACATGTGAAAGCAATAAGTTGTACTTCCTTGTGTTGGTTAAATCATCAGTCCTTGCACAATACCCTTTTCTTCTTAGCACAAACAGCTATACTAAAGATTTCAATAAAATAGGTTCTTACTTTTCATGGTATAGAAATGTAGTTATCTTTCCGTGAAACTTTGAGCAACAGATCTTCTAGAAAGTAATAGCATTATCTTTTACAATAACACTACATGATGGAACAACGTCTATACATGAAGCTAATATTAGTTCCGCACTTGTAATAATTCATGCTCTAAAAGTCTATAGCCACCTGCACTTCTTGAAAAATTTATCAGAATCCAAGCTCTAAAAGTCTGTAATGATGTTGCACGTATGACATTTAATGTGATTATTCCTTGCAGATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAGGTACCAGATTGATCTATAAAATTCATCAGCTGGTTACATCATATTCTAACTGTCAATAGAGTAGATCTTTCCTATTACGAGCTTGACAAAGCTGAAAGAATTTATTTACCTAGGTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAGGTAATTCTATTGAAAACTTAAGAAGTACAATACTATAAAATTTCATGAGCTTACGTTGTTTCGCTATGTAATTAAAGGAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGATG</genome_strand>
        <mrna_strand>CGATAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAG................................................................................................................................................................................GATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTG........................................................................................................................................................................GGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAG.................................................................................................................GTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAG.............................................................................GAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAGGGGAGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E735627" ref_strand="+" ref_description="SGN-E735627 [LC02BD11]">
      <seq>ccattttatatggctccatagtttctagtccgatagaagtcaacaaaagctgccgctcgtggatcattttatcgaacaaagcaacgattgtatgtcggaggaacattcgagttaaagccctgaaagatgggatgaacggtggcacgaatggcagtggattaggtggtcgtagttgggacccaggcttggaaattgaggtgccatttgaacaaaggccggtgaatgagtactcatctctgaaagatgaaactttatactcttgggcagaactgggtccaggggccttcttcctacgtctcgggggactttggttagtcactttcgcagttttgggagtacctattgctgctgcaagcttcaatccttcaaaggatcctttaagatttctcctggctgcaagtacggggactctttttcttgttgcactgattgtcctaagaatttatctgggatggagctatgttggagataggcttttatcagcagttataccttatgaagagactggatggtatgatgggcagatgtgggtgaagcccccagagatcttagctcgggataggctgttgggatcttataaggtgaaaccagtcattaaaatgctgaagcaaacgctagttggaacaggggctttgcttgttgcagcagtctcattattcatatttgcaacaccagtagaagattttttccgcaatactttcacaacaaacgagaactcattgagttccacctcaacaaacagcacaaataaactaggcatcaggaaagaagaactgttgcgcttgccactggaagtcaaggaggacgatgatctagcaaaagctgccgctgaagcagctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="121302" stop="118005"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121004" g_stop="120787" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120786" i_stop="120302" i_length="485">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.115" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120301" g_stop="120149" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="371" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120148" i_stop="119973" i_length="176">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119972" g_stop="119895" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="449" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119894" i_stop="119727" i_length="168">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119726" g_stop="119631" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="545" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="119630" i_stop="118792" i_length="839">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="118791" g_stop="118756" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="581" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="118755" i_stop="118643" i_length="113">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.334" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="118642" g_stop="118461" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="763" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="118460" i_stop="118384" i_length="77">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="118383" g_stop="118305" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="764" r_stop="842" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E735627" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>842</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735627" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121004" e_stop="120787"/>
          <exon e_start="120301" e_stop="120149"/>
          <exon e_start="119972" e_stop="119895"/>
          <exon e_start="119726" e_stop="119631"/>
          <exon e_start="118791" e_stop="118756"/>
          <exon e_start="118642" e_stop="118461"/>
          <exon e_start="118383" e_stop="118305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCGGTATGTTCTCAATTCTTTGTATTCATTCCTGGCCTCATCCATTTGATCCAATCTGCAGAAATCAATAGAAAAGACTCATCTCAGTTCACATACTAGTTTAGATTTATACACTATTACTCTGATAGTGTAAAGATTTTATATGCTGTTCTTATTGTCCCACTTGTGATAGAACTTTTCTTTAGCTTAATCATAGAGATTGGTTTGCAATCTCCCTATAACTGACCTGGTTCTGTAAATATTCTTACACTCTCAGTGTAAAAAACTTAAAACTAGTCCTGAGAAGGCCACAAGATCTGCACAGATGAGACATGCCATTATACGATAAACTTCTAATGCAGGTTATAGGATTATTGAAATGATAAAACTGACTCAGTAAATTACTTTTCAACATGTACTAAATTTCTGAAGTTCCATAAGGACGGAGGACTTGATATGGAGATGGGTGAGCAATTTAAAGTATTAACTAAGCTAGTGCTTTTTACCAGGTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAGGTAAATTGTTAACTTTGTGCAAGTTCTTTCTCTCAGGAGAGTTCCAAAGTGATTACTCAAGTGTCAATAGTAAACAAAGAGCTTTCGTTTTCTTTCTTCATTTATTTCTAAGTCAAAAATAAAATCAAAGAATCCTCACAATCATTGACATTCAATTTTTCATAATCCTCCTGCAGGATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTGGTAAAGTTCTTCAATTGCAGGACTTCAATTTTTTGGTCAAATCATTTAGATCACATTCAATCAATGACCATAATAGGGATAGGAGCTCCGCTGGAGATAGATAATTTGAGAACTTAACTTCTCTAATATTCTACGTAACATTCTAATTCCTGACAATGACCACAATAGGGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAGGTTAGTGGTCTTTCCTTTGCATACTTATTTAACAGGTTCTTTCTCTTTGCTTCCTCTGTTCCTCCTCATTCCCACAGTAGGAAAATATTGCCAGCTTCAAAATGGATAAATTAGCTTCAATCCAGTTCACTAAAATAGGTCATTTATACTAGTTACATCAAGCACATCTAAGTAAAGTAAGTCAAGTTGAACTCTTTTGTTAAAAAAAGAAGGTTAACAATATGAACTTTAATCATTGACAAACTGAATCTAACAAGTGCTCATGGATATGAAGAATACATAGCTAGCAACAAGGGGGAAATGGTGTAATATTGCTTGACAAGAATTGTATCACATAATAGATAAGAGCAAGCGCCCAGAGCCCTAACGACTAACAGTGAGGTGAAAATGGTCCAATATAGCATGAAATGGACTTAAAATTTGGTATCACAAATAAAACGCGGGAAATGAAGCTACATGTGAAAGCAATAAGTTGTACTTCCTTGTGTTGGTTAAATCATCAGTCCTTGCACAATACCCTTTTCTTCTTAGCACAAACAGCTATACTAAAGATTTCAATAAAATAGGTTCTTACTTTTCATGGTATAGAAATGTAGTTATCTTTCCGTGAAACTTTGAGCAACAGATCTTCTAGAAAGTAATAGCATTATCTTTTACAATAACACTACATGATGGAACAACGTCTATACATGAAGCTAATATTAGTTCCGCACTTGTAATAATTCATGCTCTAAAAGTCTATAGCCACCTGCACTTCTTGAAAAATTTATCAGAATCCAAGCTCTAAAAGTCTGTAATGATGTTGCACGTATGACATTTAATGTGATTATTCCTTGCAGATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAGGTACCAGATTGATCTATAAAATTCATCAGCTGGTTACATCATATTCTAACTGTCAATAGAGTAGATCTTTCCTATTACGAGCTTGACAAAGCTGAAAGAATTTATTTACCTAGGTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAGGTAATTCTATTGAAAACTTAAGAAGTACAATACTATAAAATTTCATGAGCTTACGTTGTTTCGCTATGTAATTAAAGGAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGAT</genome_strand>
        <mrna_strand>CCATTTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAG................................................................................................................................................................................GATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTG........................................................................................................................................................................GGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAG.................................................................................................................GTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAG.............................................................................GAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728646" ref_strand="+" ref_description="SGN-E728646 [LA18CA03]">
      <seq>gccgctcgtggatcattttatcgaacaaagcaacgattgtatgtcggaggaacattcgagttaaagccctgaaagatgggatgaacggtggcacgaatggcagtggattaggtggtcgtagttgggacccaggcttggaaattgaggtgccatttgaacaaaggccggtgaatgagtactcatctctgaaagatgaaactttatactcttgggcagaactgggtccaggggccttcttcctacgtctcgggggactttggttagtcactttcgcagttttgggagtacctattgctgctgcaagcttcaatccttcaaaggatcctttaagatttctcctggctgcaagtacggggactctttttcttgttgcactgattgtcctaagaatttatctgggatggagctatgttggagataggcttttatcagcagttataccttatgaagagactggatggtatgatgggcagatgtgggtgaagcccccagagatcttagctcgggataggctgttgggatcttataaggtgaaaccagtcattaaaatgctgaagcaaacgctagttggaacaggggctttgcttgttgcagcagtctcattattcatatttgcaacaccagtagaagattttttccgcaatactttcacaacaaacgagaactcattgagttccacctcaacaaacagcacaaataaactaggcatcaggaaagaagaactgttgcgcttgccactggaagtcaaggaggacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="121253" stop="118040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120953" g_stop="120787" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120786" i_stop="120302" i_length="485">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.115" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120301" g_stop="120149" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="320" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120148" i_stop="119973" i_length="176">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119972" g_stop="119895" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="398" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119894" i_stop="119727" i_length="168">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119726" g_stop="119631" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="494" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="119630" i_stop="118792" i_length="839">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="118791" g_stop="118756" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="530" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="118755" i_stop="118643" i_length="113">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.334" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="118642" g_stop="118461" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="712" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="118460" i_stop="118384" i_length="77">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="118383" g_stop="118340" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="713" r_stop="756" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E728646" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728646" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120953" e_stop="120787"/>
          <exon e_start="120301" e_stop="120149"/>
          <exon e_start="119972" e_stop="119895"/>
          <exon e_start="119726" e_stop="119631"/>
          <exon e_start="118791" e_stop="118756"/>
          <exon e_start="118642" e_stop="118461"/>
          <exon e_start="118383" e_stop="118340"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCGGTATGTTCTCAATTCTTTGTATTCATTCCTGGCCTCATCCATTTGATCCAATCTGCAGAAATCAATAGAAAAGACTCATCTCAGTTCACATACTAGTTTAGATTTATACACTATTACTCTGATAGTGTAAAGATTTTATATGCTGTTCTTATTGTCCCACTTGTGATAGAACTTTTCTTTAGCTTAATCATAGAGATTGGTTTGCAATCTCCCTATAACTGACCTGGTTCTGTAAATATTCTTACACTCTCAGTGTAAAAAACTTAAAACTAGTCCTGAGAAGGCCACAAGATCTGCACAGATGAGACATGCCATTATACGATAAACTTCTAATGCAGGTTATAGGATTATTGAAATGATAAAACTGACTCAGTAAATTACTTTTCAACATGTACTAAATTTCTGAAGTTCCATAAGGACGGAGGACTTGATATGGAGATGGGTGAGCAATTTAAAGTATTAACTAAGCTAGTGCTTTTTACCAGGTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAGGTAAATTGTTAACTTTGTGCAAGTTCTTTCTCTCAGGAGAGTTCCAAAGTGATTACTCAAGTGTCAATAGTAAACAAAGAGCTTTCGTTTTCTTTCTTCATTTATTTCTAAGTCAAAAATAAAATCAAAGAATCCTCACAATCATTGACATTCAATTTTTCATAATCCTCCTGCAGGATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTGGTAAAGTTCTTCAATTGCAGGACTTCAATTTTTTGGTCAAATCATTTAGATCACATTCAATCAATGACCATAATAGGGATAGGAGCTCCGCTGGAGATAGATAATTTGAGAACTTAACTTCTCTAATATTCTACGTAACATTCTAATTCCTGACAATGACCACAATAGGGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAGGTTAGTGGTCTTTCCTTTGCATACTTATTTAACAGGTTCTTTCTCTTTGCTTCCTCTGTTCCTCCTCATTCCCACAGTAGGAAAATATTGCCAGCTTCAAAATGGATAAATTAGCTTCAATCCAGTTCACTAAAATAGGTCATTTATACTAGTTACATCAAGCACATCTAAGTAAAGTAAGTCAAGTTGAACTCTTTTGTTAAAAAAAGAAGGTTAACAATATGAACTTTAATCATTGACAAACTGAATCTAACAAGTGCTCATGGATATGAAGAATACATAGCTAGCAACAAGGGGGAAATGGTGTAATATTGCTTGACAAGAATTGTATCACATAATAGATAAGAGCAAGCGCCCAGAGCCCTAACGACTAACAGTGAGGTGAAAATGGTCCAATATAGCATGAAATGGACTTAAAATTTGGTATCACAAATAAAACGCGGGAAATGAAGCTACATGTGAAAGCAATAAGTTGTACTTCCTTGTGTTGGTTAAATCATCAGTCCTTGCACAATACCCTTTTCTTCTTAGCACAAACAGCTATACTAAAGATTTCAATAAAATAGGTTCTTACTTTTCATGGTATAGAAATGTAGTTATCTTTCCGTGAAACTTTGAGCAACAGATCTTCTAGAAAGTAATAGCATTATCTTTTACAATAACACTACATGATGGAACAACGTCTATACATGAAGCTAATATTAGTTCCGCACTTGTAATAATTCATGCTCTAAAAGTCTATAGCCACCTGCACTTCTTGAAAAATTTATCAGAATCCAAGCTCTAAAAGTCTGTAATGATGTTGCACGTATGACATTTAATGTGATTATTCCTTGCAGATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAGGTACCAGATTGATCTATAAAATTCATCAGCTGGTTACATCATATTCTAACTGTCAATAGAGTAGATCTTTCCTATTACGAGCTTGACAAAGCTGAAAGAATTTATTTACCTAGGTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAGGTAATTCTATTGAAAACTTAAGAAGTACAATACTATAAAATTTCATGAGCTTACGTTGTTTCGCTATGTAATTAAAGGAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACG</genome_strand>
        <mrna_strand>GCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAG................................................................................................................................................................................GATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTG........................................................................................................................................................................GGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAG.................................................................................................................GTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAG.............................................................................GAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E291353" ref_strand="+" ref_description="SGN-E291353 [cLET-2-F13]">
      <seq>actttggttagtcactttcgcagttttgggagtacctattgctgctgcaagcttcaatccttcaaaggatcctttaagatttctcctggctgcaagtacggggactctttttcttgttgcactgattgtcctaagaatttatctgggatggagctatgttggagataggcttttatcagcagttataccttatgaagagactggatggtatgatgggcagatgtgggtgaagcccccagagatcttagctcgggataggctgttgggatcttataaggtgaaaccagtcattaaaatgctgaagcaaacgctagttggaacaggggctttgcttgttgcagcagtctcattattcatatttgcaacaccagtagaagattttttccgcaatactttcacaacaaacgagaactcattgagttccacctcaacaaacagcacaaataaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="120515" stop="118170"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120215" g_stop="120149" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120148" i_stop="119973" i_length="176">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119972" g_stop="119895" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="145" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119894" i_stop="119727" i_length="168">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119726" g_stop="119631" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="241" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119630" i_stop="118792" i_length="839">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118791" g_stop="118756" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="277" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="118755" i_stop="118643" i_length="113">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.334" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="118642" g_stop="118470" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="450" r_length="173" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E291353" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291353" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120215" e_stop="120149"/>
          <exon e_start="119972" e_stop="119895"/>
          <exon e_start="119726" e_stop="119631"/>
          <exon e_start="118791" e_stop="118756"/>
          <exon e_start="118642" e_stop="118470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAGGTAAATTGTTAACTTTGTGCAAGTTCTTTCTCTCAGGAGAGTTCCAAAGTGATTACTCAAGTGTCAATAGTAAACAAAGAGCTTTCGTTTTCTTTCTTCATTTATTTCTAAGTCAAAAATAAAATCAAAGAATCCTCACAATCATTGACATTCAATTTTTCATAATCCTCCTGCAGGATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTGGTAAAGTTCTTCAATTGCAGGACTTCAATTTTTTGGTCAAATCATTTAGATCACATTCAATCAATGACCATAATAGGGATAGGAGCTCCGCTGGAGATAGATAATTTGAGAACTTAACTTCTCTAATATTCTACGTAACATTCTAATTCCTGACAATGACCACAATAGGGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAGGTTAGTGGTCTTTCCTTTGCATACTTATTTAACAGGTTCTTTCTCTTTGCTTCCTCTGTTCCTCCTCATTCCCACAGTAGGAAAATATTGCCAGCTTCAAAATGGATAAATTAGCTTCAATCCAGTTCACTAAAATAGGTCATTTATACTAGTTACATCAAGCACATCTAAGTAAAGTAAGTCAAGTTGAACTCTTTTGTTAAAAAAAGAAGGTTAACAATATGAACTTTAATCATTGACAAACTGAATCTAACAAGTGCTCATGGATATGAAGAATACATAGCTAGCAACAAGGGGGAAATGGTGTAATATTGCTTGACAAGAATTGTATCACATAATAGATAAGAGCAAGCGCCCAGAGCCCTAACGACTAACAGTGAGGTGAAAATGGTCCAATATAGCATGAAATGGACTTAAAATTTGGTATCACAAATAAAACGCGGGAAATGAAGCTACATGTGAAAGCAATAAGTTGTACTTCCTTGTGTTGGTTAAATCATCAGTCCTTGCACAATACCCTTTTCTTCTTAGCACAAACAGCTATACTAAAGATTTCAATAAAATAGGTTCTTACTTTTCATGGTATAGAAATGTAGTTATCTTTCCGTGAAACTTTGAGCAACAGATCTTCTAGAAAGTAATAGCATTATCTTTTACAATAACACTACATGATGGAACAACGTCTATACATGAAGCTAATATTAGTTCCGCACTTGTAATAATTCATGCTCTAAAAGTCTATAGCCACCTGCACTTCTTGAAAAATTTATCAGAATCCAAGCTCTAAAAGTCTGTAATGATGTTGCACGTATGACATTTAATGTGATTATTCCTTGCAGATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAGGTACCAGATTGATCTATAAAATTCATCAGCTGGTTACATCATATTCTAACTGTCAATAGAGTAGATCTTTCCTATTACGAGCTTGACAAAGCTGAAAGAATTTATTTACCTAGGTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACT</genome_strand>
        <mrna_strand>ACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAG................................................................................................................................................................................GATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTG........................................................................................................................................................................GGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAG.................................................................................................................GTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E729298" ref_strand="+" ref_description="SGN-E729298 [LA20CE05]">
      <seq>cacaaatgctaaggctaaatttatatggctccatagtttctagtccgatagaagtcaacaaaagctgccgctcgtggatcattttatcgaacaaagcaacgattgtatgtcggaggaacattcgagttaaagccctgaaagatgggatgaacggtggcacgaatggcagtggattaggtggtcgtagttgggacccaggcttggaaattgaggtgccatttgaacaaaggccggtgaatgagtactcatctctgaaagatgaaactttatactcttgggcagaactgggtccaggggccttcttcctacgtctcgggggactttggttagtcactttcgcagttttgggagtacctattgctgctgcaagcttcaatccttcaaaggatcctttaagatttctcctggctgcaagtacggggactctttttcttgttgcactgattgtcctaagaatttatctgggatggagctatgttggagataggcttttatcagcagttataccttatgaagagactggatggtatgatgggcagatgtgggtgaagcccccagagatcttagctcgggataggctgttgggatcttataaggtgaaaccagtcattaaaatgctgaagcaaacgctagttggaacaggggctttgcttgttgcagcagtctcattattcatatttgcaacaccagtagaagattttttccgcaatactttcacaacaaacgagaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="121319" stop="118208"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121019" g_stop="120787" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120786" i_stop="120302" i_length="485">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.115" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120301" g_stop="120149" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="386" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120148" i_stop="119973" i_length="176">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119972" g_stop="119895" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="464" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119894" i_stop="119727" i_length="168">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119726" g_stop="119631" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="560" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="119630" i_stop="118792" i_length="839">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="118791" g_stop="118756" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="596" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="118755" i_stop="118643" i_length="113">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.334" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="118642" g_stop="118508" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="731" r_length="135" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E729298" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729298" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121019" e_stop="120787"/>
          <exon e_start="120301" e_stop="120149"/>
          <exon e_start="119972" e_stop="119895"/>
          <exon e_start="119726" e_stop="119631"/>
          <exon e_start="118791" e_stop="118756"/>
          <exon e_start="118642" e_stop="118508"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCGGTATGTTCTCAATTCTTTGTATTCATTCCTGGCCTCATCCATTTGATCCAATCTGCAGAAATCAATAGAAAAGACTCATCTCAGTTCACATACTAGTTTAGATTTATACACTATTACTCTGATAGTGTAAAGATTTTATATGCTGTTCTTATTGTCCCACTTGTGATAGAACTTTTCTTTAGCTTAATCATAGAGATTGGTTTGCAATCTCCCTATAACTGACCTGGTTCTGTAAATATTCTTACACTCTCAGTGTAAAAAACTTAAAACTAGTCCTGAGAAGGCCACAAGATCTGCACAGATGAGACATGCCATTATACGATAAACTTCTAATGCAGGTTATAGGATTATTGAAATGATAAAACTGACTCAGTAAATTACTTTTCAACATGTACTAAATTTCTGAAGTTCCATAAGGACGGAGGACTTGATATGGAGATGGGTGAGCAATTTAAAGTATTAACTAAGCTAGTGCTTTTTACCAGGTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAGGTAAATTGTTAACTTTGTGCAAGTTCTTTCTCTCAGGAGAGTTCCAAAGTGATTACTCAAGTGTCAATAGTAAACAAAGAGCTTTCGTTTTCTTTCTTCATTTATTTCTAAGTCAAAAATAAAATCAAAGAATCCTCACAATCATTGACATTCAATTTTTCATAATCCTCCTGCAGGATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTGGTAAAGTTCTTCAATTGCAGGACTTCAATTTTTTGGTCAAATCATTTAGATCACATTCAATCAATGACCATAATAGGGATAGGAGCTCCGCTGGAGATAGATAATTTGAGAACTTAACTTCTCTAATATTCTACGTAACATTCTAATTCCTGACAATGACCACAATAGGGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAGGTTAGTGGTCTTTCCTTTGCATACTTATTTAACAGGTTCTTTCTCTTTGCTTCCTCTGTTCCTCCTCATTCCCACAGTAGGAAAATATTGCCAGCTTCAAAATGGATAAATTAGCTTCAATCCAGTTCACTAAAATAGGTCATTTATACTAGTTACATCAAGCACATCTAAGTAAAGTAAGTCAAGTTGAACTCTTTTGTTAAAAAAAGAAGGTTAACAATATGAACTTTAATCATTGACAAACTGAATCTAACAAGTGCTCATGGATATGAAGAATACATAGCTAGCAACAAGGGGGAAATGGTGTAATATTGCTTGACAAGAATTGTATCACATAATAGATAAGAGCAAGCGCCCAGAGCCCTAACGACTAACAGTGAGGTGAAAATGGTCCAATATAGCATGAAATGGACTTAAAATTTGGTATCACAAATAAAACGCGGGAAATGAAGCTACATGTGAAAGCAATAAGTTGTACTTCCTTGTGTTGGTTAAATCATCAGTCCTTGCACAATACCCTTTTCTTCTTAGCACAAACAGCTATACTAAAGATTTCAATAAAATAGGTTCTTACTTTTCATGGTATAGAAATGTAGTTATCTTTCCGTGAAACTTTGAGCAACAGATCTTCTAGAAAGTAATAGCATTATCTTTTACAATAACACTACATGATGGAACAACGTCTATACATGAAGCTAATATTAGTTCCGCACTTGTAATAATTCATGCTCTAAAAGTCTATAGCCACCTGCACTTCTTGAAAAATTTATCAGAATCCAAGCTCTAAAAGTCTGTAATGATGTTGCACGTATGACATTTAATGTGATTATTCCTTGCAGATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAGGTACCAGATTGATCTATAAAATTCATCAGCTGGTTACATCATATTCTAACTGTCAATAGAGTAGATCTTTCCTATTACGAGCTTGACAAAGCTGAAAGAATTTATTTACCTAGGTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAAC</genome_strand>
        <mrna_strand>CACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAG................................................................................................................................................................................GATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTG........................................................................................................................................................................GGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAG.................................................................................................................GTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E327449" ref_strand="+" ref_description="SGN-E327449 [cTOC-19-H7]">
      <seq>tcaaaaaaaaaaaaagaacttctatctagctactttttcttctgaattctatggttgcaagaaaattcacaaatgctaaggctaaatttatatggctccatagtttctagtccgatagaagtcaacaaaagctgccgctcgtggatcattttatcgaacaaagcaacgattgtatgtcggaggaacattcgagttaaagccctgaaagatgggatgaacggtggcacgaatggcagtggattaggtggtcgtagttgggacccaggcttggaaattgaggtgccatttgaacaaaggccggtgaatgagtactcatctctgaaagatgaaactttatactcttgggcagaactgggtccaggggccttcttcctacgtctcgggggactttggttagtcactttcgcagttttgggagtacctattgctgctgcaagcttcaatccttcaaaggatcctttaagatttctcctggctgcaagtacggggactctttttcttgttgcactgattgtcctaagaatttatctgggatggagctatgttggagataggcttttatcagcagttataccttatgaagagactggatggtatgatgggcagatgtgggtgaagcccccagagatcttagctcgggataggctgttgggatcttataaggtgaaaccagtcattaaaatgctgaagcaaacgctagttggaacaggggctttgcttgttgcagcagtctcattattcatatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="121385" stop="118258"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121085" g_stop="120787" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120786" i_stop="120302" i_length="485">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.115" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120301" g_stop="120149" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="453" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120148" i_stop="119973" i_length="176">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119972" g_stop="119895" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="531" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119894" i_stop="119727" i_length="168">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119726" g_stop="119631" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="627" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="119630" i_stop="118792" i_length="839">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="118791" g_stop="118756" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="663" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="118755" i_stop="118643" i_length="113">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.334" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="118642" g_stop="118558" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="664" r_stop="748" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E327449" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327449" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121085" e_stop="120787"/>
          <exon e_start="120301" e_stop="120149"/>
          <exon e_start="119972" e_stop="119895"/>
          <exon e_start="119726" e_stop="119631"/>
          <exon e_start="118791" e_stop="118756"/>
          <exon e_start="118642" e_stop="118558"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TC-AAAAAAAAAAAAGAACTTCTATCTAGCTACTTTTTCTTCTGAATTCTATGGTTGCAAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCGGTATGTTCTCAATTCTTTGTATTCATTCCTGGCCTCATCCATTTGATCCAATCTGCAGAAATCAATAGAAAAGACTCATCTCAGTTCACATACTAGTTTAGATTTATACACTATTACTCTGATAGTGTAAAGATTTTATATGCTGTTCTTATTGTCCCACTTGTGATAGAACTTTTCTTTAGCTTAATCATAGAGATTGGTTTGCAATCTCCCTATAACTGACCTGGTTCTGTAAATATTCTTACACTCTCAGTGTAAAAAACTTAAAACTAGTCCTGAGAAGGCCACAAGATCTGCACAGATGAGACATGCCATTATACGATAAACTTCTAATGCAGGTTATAGGATTATTGAAATGATAAAACTGACTCAGTAAATTACTTTTCAACATGTACTAAATTTCTGAAGTTCCATAAGGACGGAGGACTTGATATGGAGATGGGTGAGCAATTTAAAGTATTAACTAAGCTAGTGCTTTTTACCAGGTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAGGTAAATTGTTAACTTTGTGCAAGTTCTTTCTCTCAGGAGAGTTCCAAAGTGATTACTCAAGTGTCAATAGTAAACAAAGAGCTTTCGTTTTCTTTCTTCATTTATTTCTAAGTCAAAAATAAAATCAAAGAATCCTCACAATCATTGACATTCAATTTTTCATAATCCTCCTGCAGGATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTGGTAAAGTTCTTCAATTGCAGGACTTCAATTTTTTGGTCAAATCATTTAGATCACATTCAATCAATGACCATAATAGGGATAGGAGCTCCGCTGGAGATAGATAATTTGAGAACTTAACTTCTCTAATATTCTACGTAACATTCTAATTCCTGACAATGACCACAATAGGGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAGGTTAGTGGTCTTTCCTTTGCATACTTATTTAACAGGTTCTTTCTCTTTGCTTCCTCTGTTCCTCCTCATTCCCACAGTAGGAAAATATTGCCAGCTTCAAAATGGATAAATTAGCTTCAATCCAGTTCACTAAAATAGGTCATTTATACTAGTTACATCAAGCACATCTAAGTAAAGTAAGTCAAGTTGAACTCTTTTGTTAAAAAAAGAAGGTTAACAATATGAACTTTAATCATTGACAAACTGAATCTAACAAGTGCTCATGGATATGAAGAATACATAGCTAGCAACAAGGGGGAAATGGTGTAATATTGCTTGACAAGAATTGTATCACATAATAGATAAGAGCAAGCGCCCAGAGCCCTAACGACTAACAGTGAGGTGAAAATGGTCCAATATAGCATGAAATGGACTTAAAATTTGGTATCACAAATAAAACGCGGGAAATGAAGCTACATGTGAAAGCAATAAGTTGTACTTCCTTGTGTTGGTTAAATCATCAGTCCTTGCACAATACCCTTTTCTTCTTAGCACAAACAGCTATACTAAAGATTTCAATAAAATAGGTTCTTACTTTTCATGGTATAGAAATGTAGTTATCTTTCCGTGAAACTTTGAGCAACAGATCTTCTAGAAAGTAATAGCATTATCTTTTACAATAACACTACATGATGGAACAACGTCTATACATGAAGCTAATATTAGTTCCGCACTTGTAATAATTCATGCTCTAAAAGTCTATAGCCACCTGCACTTCTTGAAAAATTTATCAGAATCCAAGCTCTAAAAGTCTGTAATGATGTTGCACGTATGACATTTAATGTGATTATTCCTTGCAGATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAGGTACCAGATTGATCTATAAAATTCATCAGCTGGTTACATCATATTCTAACTGTCAATAGAGTAGATCTTTCCTATTACGAGCTTGACAAAGCTGAAAGAATTTATTTACCTAGGTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTG</genome_strand>
        <mrna_strand>TCAAAAAAAAAAAAAGAACTTCTATCTAGCTACTTTTTCTTCTGAATTCTATGGTTGCAAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAG................................................................................................................................................................................GATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTG........................................................................................................................................................................GGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAG.................................................................................................................GTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E278922" ref_strand="+" ref_description="SGN-E278922 [cLER-2-A18]">
      <seq>taaagccctgaaagatgggatgaacggtggcacgaatggcagtggattaggtggtcgtagttgggacccaggcttggaaattgaggtgccatttgaacaaaggccggtgaatgagtactcatctctgaaagatgaaactttatactcttgggcagaactgggtccaggggccttcttcctacgtctcgggggactttggttagtcactttcgcagttttgggagtacctattgctgctgcaagcttcaatccttcaaaggatcctttaagatttctcctggctgcaagtacggggactctttttcttgttgcactgattgtcctaagaatttatctgggatggagctatgttggagataggcttttatcagcagttataccttatgaagagactggatggtatgatgggcagatgtgggtgaagcccccagagatcttagctcgggataggctgttgggatcttataaggtgaaaccagtcattaaaatgctgaagcaaacgctagttggaacaggggctttgcttgttgcagcagtctcatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="121192" stop="118268"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120892" g_stop="120787" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120786" i_stop="120302" i_length="485">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.115" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120301" g_stop="120149" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="259" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120148" i_stop="119973" i_length="176">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119972" g_stop="119895" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="337" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119894" i_stop="119727" i_length="168">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119726" g_stop="119631" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="433" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="119630" i_stop="118792" i_length="839">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="118791" g_stop="118756" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="469" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="118755" i_stop="118643" i_length="113">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.334" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="118642" g_stop="118568" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="544" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E278922" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278922" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120892" e_stop="120787"/>
          <exon e_start="120301" e_stop="120149"/>
          <exon e_start="119972" e_stop="119895"/>
          <exon e_start="119726" e_stop="119631"/>
          <exon e_start="118791" e_stop="118756"/>
          <exon e_start="118642" e_stop="118568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCGGTATGTTCTCAATTCTTTGTATTCATTCCTGGCCTCATCCATTTGATCCAATCTGCAGAAATCAATAGAAAAGACTCATCTCAGTTCACATACTAGTTTAGATTTATACACTATTACTCTGATAGTGTAAAGATTTTATATGCTGTTCTTATTGTCCCACTTGTGATAGAACTTTTCTTTAGCTTAATCATAGAGATTGGTTTGCAATCTCCCTATAACTGACCTGGTTCTGTAAATATTCTTACACTCTCAGTGTAAAAAACTTAAAACTAGTCCTGAGAAGGCCACAAGATCTGCACAGATGAGACATGCCATTATACGATAAACTTCTAATGCAGGTTATAGGATTATTGAAATGATAAAACTGACTCAGTAAATTACTTTTCAACATGTACTAAATTTCTGAAGTTCCATAAGGACGGAGGACTTGATATGGAGATGGGTGAGCAATTTAAAGTATTAACTAAGCTAGTGCTTTTTACCAGGTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAGGTAAATTGTTAACTTTGTGCAAGTTCTTTCTCTCAGGAGAGTTCCAAAGTGATTACTCAAGTGTCAATAGTAAACAAAGAGCTTTCGTTTTCTTTCTTCATTTATTTCTAAGTCAAAAATAAAATCAAAGAATCCTCACAATCATTGACATTCAATTTTTCATAATCCTCCTGCAGGATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTGGTAAAGTTCTTCAATTGCAGGACTTCAATTTTTTGGTCAAATCATTTAGATCACATTCAATCAATGACCATAATAGGGATAGGAGCTCCGCTGGAGATAGATAATTTGAGAACTTAACTTCTCTAATATTCTACGTAACATTCTAATTCCTGACAATGACCACAATAGGGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAGGTTAGTGGTCTTTCCTTTGCATACTTATTTAACAGGTTCTTTCTCTTTGCTTCCTCTGTTCCTCCTCATTCCCACAGTAGGAAAATATTGCCAGCTTCAAAATGGATAAATTAGCTTCAATCCAGTTCACTAAAATAGGTCATTTATACTAGTTACATCAAGCACATCTAAGTAAAGTAAGTCAAGTTGAACTCTTTTGTTAAAAAAAGAAGGTTAACAATATGAACTTTAATCATTGACAAACTGAATCTAACAAGTGCTCATGGATATGAAGAATACATAGCTAGCAACAAGGGGGAAATGGTGTAATATTGCTTGACAAGAATTGTATCACATAATAGATAAGAGCAAGCGCCCAGAGCCCTAACGACTAACAGTGAGGTGAAAATGGTCCAATATAGCATGAAATGGACTTAAAATTTGGTATCACAAATAAAACGCGGGAAATGAAGCTACATGTGAAAGCAATAAGTTGTACTTCCTTGTGTTGGTTAAATCATCAGTCCTTGCACAATACCCTTTTCTTCTTAGCACAAACAGCTATACTAAAGATTTCAATAAAATAGGTTCTTACTTTTCATGGTATAGAAATGTAGTTATCTTTCCGTGAAACTTTGAGCAACAGATCTTCTAGAAAGTAATAGCATTATCTTTTACAATAACACTACATGATGGAACAACGTCTATACATGAAGCTAATATTAGTTCCGCACTTGTAATAATTCATGCTCTAAAAGTCTATAGCCACCTGCACTTCTTGAAAAATTTATCAGAATCCAAGCTCTAAAAGTCTGTAATGATGTTGCACGTATGACATTTAATGTGATTATTCCTTGCAGATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAGGTACCAGATTGATCTATAAAATTCATCAGCTGGTTACATCATATTCTAACTGTCAATAGAGTAGATCTTTCCTATTACGAGCTTGACAAAGCTGAAAGAATTTATTTACCTAGGTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTA</genome_strand>
        <mrna_strand>TAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAG................................................................................................................................................................................GATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTG........................................................................................................................................................................GGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAG.................................................................................................................GTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730712" ref_strand="+" ref_description="SGN-E730712 [LA24DH01]">
      <seq>ccgttgcatggtcaaaaaaaaaaaaaaacttctatcaacctactttttcttcggaattctatggttgcaaaaaaattcacaaatgctaaggctaaatttatatggctccatagtttctagcccaataaaagtcaacaaaagctgccgctcggggatctttttatcaaacaaagcaacaattgtatgtcggaggaactttcaagttaaacccctgaaaaatgggatgaacgggggcacaaatggcaggggattagggggccgaatttggaacccaggcttgaaaattgaggggccttttgaacaaaggccggggaatgagtactcttctctgaaaaatgaaactttatactcttgggcaaaactgggtccaggggccttcttcctacgtctcgggggactttggttagtcactttcccagttttgggagaacctattgctgctgcaagcttcaatccttcaaaggatcctttaaaatttctcctggctgcaagaacgggaactctttttcttgttgcactgattgccctaaaaatttatctgggatggacctatgttggaaataggcttttatcaccagttataccttatgaaaaaactgaatggtatgatgggcagatgtgggtgaaccccccaaaaatcttacctcggaataggctgttgggatcttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="121394" stop="118458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121096" g_stop="120787" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="0.903"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120786" i_stop="120302" i_length="485">
            <donor d_prob="0.996" d_score="0.88"/>
            <acceptor a_prob="0.115" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120301" g_stop="120149" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="463" r_length="153" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120148" i_stop="119973" i_length="176">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.849" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119972" g_stop="119895" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="541" r_length="78" r_score="0.936"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119894" i_stop="119727" i_length="168">
            <donor d_prob="0.831" d_score="0.92"/>
            <acceptor a_prob="0.341" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119726" g_stop="119631" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="637" r_length="96" r_score="0.906"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="119630" i_stop="118792" i_length="839">
            <donor d_prob="0.990" d_score="0.88"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="118791" g_stop="118758" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="671" r_length="34" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E730712" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730712" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121096" e_stop="120787"/>
          <exon e_start="120301" e_stop="120149"/>
          <exon e_start="119972" e_stop="119895"/>
          <exon e_start="119726" e_stop="119631"/>
          <exon e_start="118791" e_stop="118758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATGCATGGTCAAAAAAAAAAAAGAACTTCTATCTAGCTACTTTTTCTTCTGAATTCTATGGTTGCAAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCGGTATGTTCTCAATTCTTTGTATTCATTCCTGGCCTCATCCATTTGATCCAATCTGCAGAAATCAATAGAAAAGACTCATCTCAGTTCACATACTAGTTTAGATTTATACACTATTACTCTGATAGTGTAAAGATTTTATATGCTGTTCTTATTGTCCCACTTGTGATAGAACTTTTCTTTAGCTTAATCATAGAGATTGGTTTGCAATCTCCCTATAACTGACCTGGTTCTGTAAATATTCTTACACTCTCAGTGTAAAAAACTTAAAACTAGTCCTGAGAAGGCCACAAGATCTGCACAGATGAGACATGCCATTATACGATAAACTTCTAATGCAGGTTATAGGATTATTGAAATGATAAAACTGACTCAGTAAATTACTTTTCAACATGTACTAAATTTCTGAAGTTCCATAAGGACGGAGGACTTGATATGGAGATGGGTGAGCAATTTAAAGTATTAACTAAGCTAGTGCTTTTTACCAGGTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAGGTAAATTGTTAACTTTGTGCAAGTTCTTTCTCTCAGGAGAGTTCCAAAGTGATTACTCAAGTGTCAATAGTAAACAAAGAGCTTTCGTTTTCTTTCTTCATTTATTTCTAAGTCAAAAATAAAATCAAAGAATCCTCACAATCATTGACATTCAATTTTTCATAATCCTCCTGCAGGATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTGGTAAAGTTCTTCAATTGCAGGACTTCAATTTTTTGGTCAAATCATTTAGATCACATTCAATCAATGACCATAATAGGGATAGGAGCTCCGCTGGAGATAGATAATTTGAGAACTTAACTTCTCTAATATTCTACGTAACATTCTAATTCCTGACAATGACCACAATAGGGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAGGTTAGTGGTCTTTCCTTTGCATACTTATTTAACAGGTTCTTTCTCTTTGCTTCCTCTGTTCCTCCTCATTCCCACAGTAGGAAAATATTGCCAGCTTCAAAATGGATAAATTAGCTTCAATCCAGTTCACTAAAATAGGTCATTTATACTAGTTACATCAAGCACATCTAAGTAAAGTAAGTCAAGTTGAACTCTTTTGTTAAAAAAAGAAGGTTAACAATATGAACTTTAATCATTGACAAACTGAATCTAACAAGTGCTCATGGATATGAAGAATACATAGCTAGCAACAAGGGGGAAATGGTGTAATATTGCTTGACAAGAATTGTATCACATAATAGATAAGAGCAAGCGCCCAGAGCCCTAACGACTAACAGTGAGGTGAAAATGGTCCAATATAGCATGAAATGGACTTAAAATTTGGTATCACAAATAAAACGCGGGAAATGAAGCTACATGTGAAAGCAATAAGTTGTACTTCCTTGTGTTGGTTAAATCATCAGTCCTTGCACAATACCCTTTTCTTCTTAGCACAAACAGCTATACTAAAGATTTCAATAAAATAGGTTCTTACTTTTCATGGTATAGAAATGTAGTTATCTTTCCGTGAAACTTTGAGCAACAGATCTTCTAGAAAGTAATAGCATTATCTTTTACAATAACACTACATGATGGAACAACGTCTATACATGAAGCTAATATTAGTTCCGCACTTGTAATAATTCATGCTCTAAAAGTCTATAGCCACCTGCACTTCTTGAAAAATTTATCAGAATCCAAGCTCTAAAAGTCTGTAATGATGTTGCACGTATGACATTTAATGTGATTATTCCTTGCAGATCTTAGCTCGGGATAGGCTGTTGGGATCTTATA</genome_strand>
        <mrna_strand>CCGTTGCATGGTCAAAAAAAAAAAAAAACTTCTATCAACCTACTTTTTCTTCGGAATTCTATGGTTGCAAAAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGCCCAATAAAAGTCAACAAAAGCTGCCGCTCGGGGATCTTTTTATCAAACAAAGCAACAATTGTATGTCGGAGGAACTTTCAAGTTAAACCCCTGAAAAATGGGATGAACGGGGGCACAAATGGCAGGGGATTAGGGGGCCGAATTTGGAACCCAGGCTTGAAAATTGAGGGGCCTTTTGAACAAAGGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAATGAGTACTCTTCTCTGAAAAATGAAACTTTATACTCTTGGGCAAAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCCCAGTTTTGGGAGAACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAG................................................................................................................................................................................GATCCTTTAAAATTTCTCCTGGCTGCAAGAACGGGAACTCTTTTTCTTGTTGCACTGATTGCCCTAAAAATTTATCTG........................................................................................................................................................................GGATGGACCTATGTTGGAAATAGGCTTTTATCACCAGTTATACCTTATGAAAAAACTGAATGGTATGATGGGCAGATGTGGGTGAACCCCCCAAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTACCTCGGAATAGGCTGTTGGGATCTTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E348117" ref_strand="+" ref_description="SGN-E348117 [cTOF-31-N22]">
      <seq>gtttctagtccgatagaagtcaaccaaagctgccgctcgtggatcattttatcgaacaaagcaacgattgtatgtcggaggaacattcgagttaaagccctgaaagatgggatgaacggtggcacgaatggcagtggattaggtggtcgtagttgggacccaggcttggaaattgaggtgccatttgaacaaaggccggtgaatgagtactcatctctgaaagatgaaactttatactcttgggcagaactgggtccaggggccttcttcctacgtctcgggggactttggttagtcactttcgcagttttgggagtacctattgctgctgcaagcttcaatccttcaaaggatcctttaagatttctcctggctgcaagtacggggactctttttcttgttgcactgattgtcctaagaatttatctgggatggagctatgttggagataggcttttatcagcagttataccttatgaagagactgggatggtatgatgggccaatggtggggtgaagcccccagagatcttagctcggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="121284" stop="119323"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120984" g_stop="120787" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120786" i_stop="120302" i_length="485">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.115" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120301" g_stop="120149" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="351" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120148" i_stop="119973" i_length="176">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119972" g_stop="119895" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="429" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119894" i_stop="119727" i_length="168">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119726" g_stop="119631" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="528" r_length="99" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E348117" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120984" e_stop="120787"/>
          <exon e_start="120301" e_stop="120149"/>
          <exon e_start="119972" e_stop="119895"/>
          <exon e_start="119726" e_stop="119631"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCGGTATGTTCTCAATTCTTTGTATTCATTCCTGGCCTCATCCATTTGATCCAATCTGCAGAAATCAATAGAAAAGACTCATCTCAGTTCACATACTAGTTTAGATTTATACACTATTACTCTGATAGTGTAAAGATTTTATATGCTGTTCTTATTGTCCCACTTGTGATAGAACTTTTCTTTAGCTTAATCATAGAGATTGGTTTGCAATCTCCCTATAACTGACCTGGTTCTGTAAATATTCTTACACTCTCAGTGTAAAAAACTTAAAACTAGTCCTGAGAAGGCCACAAGATCTGCACAGATGAGACATGCCATTATACGATAAACTTCTAATGCAGGTTATAGGATTATTGAAATGATAAAACTGACTCAGTAAATTACTTTTCAACATGTACTAAATTTCTGAAGTTCCATAAGGACGGAGGACTTGATATGGAGATGGGTGAGCAATTTAAAGTATTAACTAAGCTAGTGCTTTTTACCAGGTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAGGTAAATTGTTAACTTTGTGCAAGTTCTTTCTCTCAGGAGAGTTCCAAAGTGATTACTCAAGTGTCAATAGTAAACAAAGAGCTTTCGTTTTCTTTCTTCATTTATTTCTAAGTCAAAAATAAAATCAAAGAATCCTCACAATCATTGACATTCAATTTTTCATAATCCTCCTGCAGGATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTGGTAAAGTTCTTCAATTGCAGGACTTCAATTTTTTGGTCAAATCATTTAGATCACATTCAATCAATGACCATAATAGGGATAGGAGCTCCGCTGGAGATAGATAATTTGAGAACTTAACTTCTCTAATATTCTACGTAACATTCTAATTCCTGACAATGACCACAATAGGGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACT-GGATGGTATGATGGGCAGAT-GT-GGGTGAAGCCCCCAGAG</genome_strand>
        <mrna_strand>GTTTCTAGTCCGATAGAAGTCAACCAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAG................................................................................................................................................................................GATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTG........................................................................................................................................................................GGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGGATGGTATGATGGGCCAATGGTGGGGTGAAGCCCCCAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E259441" ref_strand="+" ref_description="SGN-E259441 [cLEG-42-A23]">
      <seq>ttgcaagaaaattcacaaatgcttaggctaaatttatatggctccatagtttcgaggccgatagaagtcaacaaaagctgccgctcgtggatcattttatcgaacaaagcaacgattgtatgtcggaggaacattcgagttaaagccctgaaagatgggatgaacggtggcacgaatggcagtggattaggtggtcgtagttgggacccaggcttggaaattgaggtgccatttgaacaaaggccggtgaatgagtactcatctctgaaagatgaaactttatactcttgggcagaactgggtccaggggccttcttcctacgtctcgggggactttggttagtcactttcgcagttttgggagtacctattgctgctgcaagcttcaatccttcaaaggatcctttaagatttctcctggctgcaagtacggggactctttttcttgttgcactgattgtcctaagaatttatctgggatggagctatgttggagataggcttttatcagcagttataccttatgaagagactggatggtatgatgggcagatgtgggtgaagccccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="121332" stop="119335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121032" g_stop="120787" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120786" i_stop="120302" i_length="485">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.115" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120301" g_stop="120149" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="399" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120148" i_stop="119973" i_length="176">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119972" g_stop="119895" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="477" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119894" i_stop="119727" i_length="168">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119726" g_stop="119635" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="569" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E259441" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259441" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121032" e_stop="120787"/>
          <exon e_start="120301" e_stop="120149"/>
          <exon e_start="119972" e_stop="119895"/>
          <exon e_start="119726" e_stop="119635"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCAAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCGGTATGTTCTCAATTCTTTGTATTCATTCCTGGCCTCATCCATTTGATCCAATCTGCAGAAATCAATAGAAAAGACTCATCTCAGTTCACATACTAGTTTAGATTTATACACTATTACTCTGATAGTGTAAAGATTTTATATGCTGTTCTTATTGTCCCACTTGTGATAGAACTTTTCTTTAGCTTAATCATAGAGATTGGTTTGCAATCTCCCTATAACTGACCTGGTTCTGTAAATATTCTTACACTCTCAGTGTAAAAAACTTAAAACTAGTCCTGAGAAGGCCACAAGATCTGCACAGATGAGACATGCCATTATACGATAAACTTCTAATGCAGGTTATAGGATTATTGAAATGATAAAACTGACTCAGTAAATTACTTTTCAACATGTACTAAATTTCTGAAGTTCCATAAGGACGGAGGACTTGATATGGAGATGGGTGAGCAATTTAAAGTATTAACTAAGCTAGTGCTTTTTACCAGGTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAGGTAAATTGTTAACTTTGTGCAAGTTCTTTCTCTCAGGAGAGTTCCAAAGTGATTACTCAAGTGTCAATAGTAAACAAAGAGCTTTCGTTTTCTTTCTTCATTTATTTCTAAGTCAAAAATAAAATCAAAGAATCCTCACAATCATTGACATTCAATTTTTCATAATCCTCCTGCAGGATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTGGTAAAGTTCTTCAATTGCAGGACTTCAATTTTTTGGTCAAATCATTTAGATCACATTCAATCAATGACCATAATAGGGATAGGAGCTCCGCTGGAGATAGATAATTTGAGAACTTAACTTCTCTAATATTCTACGTAACATTCTAATTCCTGACAATGACCACAATAGGGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCC</genome_strand>
        <mrna_strand>TTGCAAGAAAATTCACAAATGCTTAGGCTAAATTTATATGGCTCCATAGTTTCGAGGCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAG................................................................................................................................................................................GATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTG........................................................................................................................................................................GGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E302916" ref_strand="+" ref_description="SGN-E302916 [cLEW-26-K10]">
      <seq>tttttcttctgaattctatggttgcaagaaaattcacaaatgctaaggctaaatttatatggctccatagtttctagtccgatagaagtcaacaaaagctgccgctcgtggatcattttatcgaacaaagcaacgattgtatgtcggaggaacattcgagttaaagccctgaaagatgggatgaacggtggcacgaatggcagtggattaggtggtcgtagttgggacccaggcttggaaattgaggtgccatttgaacaaaggccggtgaatgagtactcatctctgaaagatgaaactttatactcttgggcagaactgggtccaggggccttcttcctacgtctcgggggactttggttagtcactttcgcagttttgggagtacctattgctgctgcaagcttcaatccttcaaaggatcctttaagatttctcctggctgcaagtacggggactctttttcttgttgcactgattgtcctaagaatttatctgggatggagctatgttggagataggcttttatcagcagttataccttatgaagagactggatggtatgatgggcagatgtgggtgaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="121353" stop="119339"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121053" g_stop="120787" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120786" i_stop="120302" i_length="485">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.115" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120301" g_stop="120149" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="420" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120148" i_stop="119973" i_length="176">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119972" g_stop="119895" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="498" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119894" i_stop="119727" i_length="168">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119726" g_stop="119639" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="586" r_length="88" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E302916" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121053" e_stop="120787"/>
          <exon e_start="120301" e_stop="120149"/>
          <exon e_start="119972" e_stop="119895"/>
          <exon e_start="119726" e_stop="119639"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTTCTGAATTCTATGGTTGCAAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCGGTATGTTCTCAATTCTTTGTATTCATTCCTGGCCTCATCCATTTGATCCAATCTGCAGAAATCAATAGAAAAGACTCATCTCAGTTCACATACTAGTTTAGATTTATACACTATTACTCTGATAGTGTAAAGATTTTATATGCTGTTCTTATTGTCCCACTTGTGATAGAACTTTTCTTTAGCTTAATCATAGAGATTGGTTTGCAATCTCCCTATAACTGACCTGGTTCTGTAAATATTCTTACACTCTCAGTGTAAAAAACTTAAAACTAGTCCTGAGAAGGCCACAAGATCTGCACAGATGAGACATGCCATTATACGATAAACTTCTAATGCAGGTTATAGGATTATTGAAATGATAAAACTGACTCAGTAAATTACTTTTCAACATGTACTAAATTTCTGAAGTTCCATAAGGACGGAGGACTTGATATGGAGATGGGTGAGCAATTTAAAGTATTAACTAAGCTAGTGCTTTTTACCAGGTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAGGTAAATTGTTAACTTTGTGCAAGTTCTTTCTCTCAGGAGAGTTCCAAAGTGATTACTCAAGTGTCAATAGTAAACAAAGAGCTTTCGTTTTCTTTCTTCATTTATTTCTAAGTCAAAAATAAAATCAAAGAATCCTCACAATCATTGACATTCAATTTTTCATAATCCTCCTGCAGGATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTGGTAAAGTTCTTCAATTGCAGGACTTCAATTTTTTGGTCAAATCATTTAGATCACATTCAATCAATGACCATAATAGGGATAGGAGCTCCGCTGGAGATAGATAATTTGAGAACTTAACTTCTCTAATATTCTACGTAACATTCTAATTCCTGACAATGACCACAATAGGGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGC</genome_strand>
        <mrna_strand>TTTTTCTTCTGAATTCTATGGTTGCAAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAG................................................................................................................................................................................GATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTG........................................................................................................................................................................GGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E252133" ref_strand="+" ref_description="SGN-E252133 [cLEG-8-G4]">
      <seq>aaaaagaacttctatctagctactttttcttctgaattctatggttgcaagaaaattcacaaatgctaaggctaaatttatatggctccatagtttctagtccgatagaagtcaacaaaagctgccgctcgtggatcattttatcgaacaaagcaacgattgtatgtcggaggaacattcgagttaaagccctgaaagatgggatgaacggtggcacgaatggcagtggattaggtggtcgtagttgggacccaggcttggaaattgaggtgccatttgaacaaaggccggtgaatgagtactcatctctgaaagatgaaactttatactcttgggcagaactgggtccaggggccttcttcctacgtctcgggggactttggttagtcactttcgcagttttgggagtacctattgctgctgcaagcttcaatccttcaaaggatcctttaagatttctcctggctgcaagtacggggactctttttcttgttgcactgattgtcctaagaatttatctgggatggagctatgttggagataggcttttatcagcagttataccttatgaagagactggatggtatgatgggcagatgtgggtgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="121376" stop="119340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121076" g_stop="120787" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120786" i_stop="120302" i_length="485">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.115" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120301" g_stop="120149" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="443" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120148" i_stop="119973" i_length="176">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119972" g_stop="119895" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="521" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119894" i_stop="119727" i_length="168">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119726" g_stop="119640" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="608" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E252133" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E252133" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121076" e_stop="120787"/>
          <exon e_start="120301" e_stop="120149"/>
          <exon e_start="119972" e_stop="119895"/>
          <exon e_start="119726" e_stop="119640"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGAACTTCTATCTAGCTACTTTTTCTTCTGAATTCTATGGTTGCAAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCGGTATGTTCTCAATTCTTTGTATTCATTCCTGGCCTCATCCATTTGATCCAATCTGCAGAAATCAATAGAAAAGACTCATCTCAGTTCACATACTAGTTTAGATTTATACACTATTACTCTGATAGTGTAAAGATTTTATATGCTGTTCTTATTGTCCCACTTGTGATAGAACTTTTCTTTAGCTTAATCATAGAGATTGGTTTGCAATCTCCCTATAACTGACCTGGTTCTGTAAATATTCTTACACTCTCAGTGTAAAAAACTTAAAACTAGTCCTGAGAAGGCCACAAGATCTGCACAGATGAGACATGCCATTATACGATAAACTTCTAATGCAGGTTATAGGATTATTGAAATGATAAAACTGACTCAGTAAATTACTTTTCAACATGTACTAAATTTCTGAAGTTCCATAAGGACGGAGGACTTGATATGGAGATGGGTGAGCAATTTAAAGTATTAACTAAGCTAGTGCTTTTTACCAGGTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAGGTAAATTGTTAACTTTGTGCAAGTTCTTTCTCTCAGGAGAGTTCCAAAGTGATTACTCAAGTGTCAATAGTAAACAAAGAGCTTTCGTTTTCTTTCTTCATTTATTTCTAAGTCAAAAATAAAATCAAAGAATCCTCACAATCATTGACATTCAATTTTTCATAATCCTCCTGCAGGATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTGGTAAAGTTCTTCAATTGCAGGACTTCAATTTTTTGGTCAAATCATTTAGATCACATTCAATCAATGACCATAATAGGGATAGGAGCTCCGCTGGAGATAGATAATTTGAGAACTTAACTTCTCTAATATTCTACGTAACATTCTAATTCCTGACAATGACCACAATAGGGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAG</genome_strand>
        <mrna_strand>AAAAAGAACTTCTATCTAGCTACTTTTTCTTCTGAATTCTATGGTTGCAAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAG................................................................................................................................................................................GATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTG........................................................................................................................................................................GGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E725776" ref_strand="+" ref_description="SGN-E725776 [LA05CF04]">
      <seq>gtttctagtccgatagaagtcaacaaaagctgccgctcgtggatcattttatcgaacaaagcaacgattgtatgtcggaggaacattcgagttaaagccctgaaagatgggatgaacggtggcacgaatggcagtggattaggtggtcgtagttgggacccaggcttggaaattgaggtgccatttgaacaaaggccggtgaatgagtactcatctctgaaagatgaaactttatactcttgggcagaactgggtccaggggccttcttcctacgtctcgggggactttggttagtcactttcgcagttttgggagtacctattgctgctgcaagcttcaatccttcaaaggatcctttaagaattctcctggctgcaagtacggggactctttttcttgttgcactgattgtcctaagaatttatctgggatggagctatgttggagataggcttttatcagcagttataccttatgaagagactggatggtatgatgggcagatgtgggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="121284" stop="119343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120984" g_stop="120787" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120786" i_stop="120302" i_length="485">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.115" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120301" g_stop="120149" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="351" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120148" i_stop="119973" i_length="176">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119972" g_stop="119895" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="429" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119894" i_stop="119727" i_length="168">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119726" g_stop="119643" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="513" r_length="84" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E725776" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725776" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120984" e_stop="120787"/>
          <exon e_start="120301" e_stop="120149"/>
          <exon e_start="119972" e_stop="119895"/>
          <exon e_start="119726" e_stop="119643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCGGTATGTTCTCAATTCTTTGTATTCATTCCTGGCCTCATCCATTTGATCCAATCTGCAGAAATCAATAGAAAAGACTCATCTCAGTTCACATACTAGTTTAGATTTATACACTATTACTCTGATAGTGTAAAGATTTTATATGCTGTTCTTATTGTCCCACTTGTGATAGAACTTTTCTTTAGCTTAATCATAGAGATTGGTTTGCAATCTCCCTATAACTGACCTGGTTCTGTAAATATTCTTACACTCTCAGTGTAAAAAACTTAAAACTAGTCCTGAGAAGGCCACAAGATCTGCACAGATGAGACATGCCATTATACGATAAACTTCTAATGCAGGTTATAGGATTATTGAAATGATAAAACTGACTCAGTAAATTACTTTTCAACATGTACTAAATTTCTGAAGTTCCATAAGGACGGAGGACTTGATATGGAGATGGGTGAGCAATTTAAAGTATTAACTAAGCTAGTGCTTTTTACCAGGTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAGGTAAATTGTTAACTTTGTGCAAGTTCTTTCTCTCAGGAGAGTTCCAAAGTGATTACTCAAGTGTCAATAGTAAACAAAGAGCTTTCGTTTTCTTTCTTCATTTATTTCTAAGTCAAAAATAAAATCAAAGAATCCTCACAATCATTGACATTCAATTTTTCATAATCCTCCTGCAGGATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTGGTAAAGTTCTTCAATTGCAGGACTTCAATTTTTTGGTCAAATCATTTAGATCACATTCAATCAATGACCATAATAGGGATAGGAGCTCCGCTGGAGATAGATAATTTGAGAACTTAACTTCTCTAATATTCTACGTAACATTCTAATTCCTGACAATGACCACAATAGGGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTG</genome_strand>
        <mrna_strand>GTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAG................................................................................................................................................................................GATCCTTTAAGAATTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTG........................................................................................................................................................................GGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E255109" ref_strand="+" ref_description="SGN-E255109 [cLEG-31-F20]">
      <seq>ttgcaagaaaattcacaaatgcttaggctaaatttatatggctccatagtttctagtccgatagaagtcaacaaaagctgccgctcgtggatcattttatcgaacaaagcaacgattgtatgtcggaggaacattcgagttaaagccctgaaagatgggatgaacggtggcacagaatagggnnccagtggattaagtggtcgtagttgggacccaggcttggaaattgaggtgccatttgaacaaaggccggtgaatgagtactcatctctgaaagatgaaactttatactcttgggcagaactgggtccaggggccttcttcctacgtctcgggggactttggttagtcactttcgcagatttgggagtacctattgctgctgcaagcttcaatccttcaaaggatcctttaagatttctcctggctgcaagtacggggactctttttcttgttgcactgattgtcctaagaatttatctgggatggagctatgttggagataggcttttatcagcagttataccttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="121332" stop="119379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121032" g_stop="120787" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120786" i_stop="120302" i_length="485">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.115" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120301" g_stop="120149" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="405" r_length="153" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120148" i_stop="119973" i_length="176">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119972" g_stop="119895" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="483" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119894" i_stop="119727" i_length="168">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.341" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119726" g_stop="119679" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="531" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E255109" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255109" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121032" e_stop="120787"/>
          <exon e_start="120301" e_stop="120149"/>
          <exon e_start="119972" e_stop="119895"/>
          <exon e_start="119726" e_stop="119679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCAAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCAC-GAAT--GG---CAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCGGTATGTTCTCAATTCTTTGTATTCATTCCTGGCCTCATCCATTTGATCCAATCTGCAGAAATCAATAGAAAAGACTCATCTCAGTTCACATACTAGTTTAGATTTATACACTATTACTCTGATAGTGTAAAGATTTTATATGCTGTTCTTATTGTCCCACTTGTGATAGAACTTTTCTTTAGCTTAATCATAGAGATTGGTTTGCAATCTCCCTATAACTGACCTGGTTCTGTAAATATTCTTACACTCTCAGTGTAAAAAACTTAAAACTAGTCCTGAGAAGGCCACAAGATCTGCACAGATGAGACATGCCATTATACGATAAACTTCTAATGCAGGTTATAGGATTATTGAAATGATAAAACTGACTCAGTAAATTACTTTTCAACATGTACTAAATTTCTGAAGTTCCATAAGGACGGAGGACTTGATATGGAGATGGGTGAGCAATTTAAAGTATTAACTAAGCTAGTGCTTTTTACCAGGTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAGGTAAATTGTTAACTTTGTGCAAGTTCTTTCTCTCAGGAGAGTTCCAAAGTGATTACTCAAGTGTCAATAGTAAACAAAGAGCTTTCGTTTTCTTTCTTCATTTATTTCTAAGTCAAAAATAAAATCAAAGAATCCTCACAATCATTGACATTCAATTTTTCATAATCCTCCTGCAGGATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTGGTAAAGTTCTTCAATTGCAGGACTTCAATTTTTTGGTCAAATCATTTAGATCACATTCAATCAATGACCATAATAGGGATAGGAGCTCCGCTGGAGATAGATAATTTGAGAACTTAACTTCTCTAATATTCTACGTAACATTCTAATTCCTGACAATGACCACAATAGGGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTAT</genome_strand>
        <mrna_strand>TTGCAAGAAAATTCACAAATGCTTAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACAGAATAGGGNNCCAGTGGATTAAGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGATTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAG................................................................................................................................................................................GATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTG........................................................................................................................................................................GGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726018" ref_strand="+" ref_description="SGN-E726018 [LA10AC02]">
      <seq>gagggaaaattcacaaatgctaaggctaaatttatatggctccatagtttctagtccgatagaagtcaacaaaagctgccgctcgtggatcattttatcgaacaaagcaacgattgtatgtcggaggaacattcgagttaaagccctgaaagatgggatgaacggtggcacgaatggcagtggattaggtggtcgtagttgggacccaggcttggaaattgaggtgccatttgaacaaaggccggtgaatgagtactcatctctgaaagatgaaactttatactcttgggcagaactgggtccaggggccttcttcctacgtctcgggggactttggttagtcactttcgcagttttgggagtacctattgctgctgcaagcttcaatccttcaaaggatcctttaagatttctcctggctgcaagtacggngactctttttcttgttgcactgattgtcctaagaatttatctgggatggagctatgttggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="121326" stop="119408"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121030" g_stop="120787" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120786" i_stop="120302" i_length="485">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.115" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120301" g_stop="120149" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="397" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120148" i_stop="119973" i_length="176">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119972" g_stop="119895" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="475" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119894" i_stop="119727" i_length="168">
            <donor d_prob="0.831" d_score="0.98"/>
            <acceptor a_prob="0.341" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119726" g_stop="119708" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="494" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E726018" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726018" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121030" e_stop="120787"/>
          <exon e_start="120301" e_stop="120149"/>
          <exon e_start="119972" e_stop="119895"/>
          <exon e_start="119726" e_stop="119708"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCGGTATGTTCTCAATTCTTTGTATTCATTCCTGGCCTCATCCATTTGATCCAATCTGCAGAAATCAATAGAAAAGACTCATCTCAGTTCACATACTAGTTTAGATTTATACACTATTACTCTGATAGTGTAAAGATTTTATATGCTGTTCTTATTGTCCCACTTGTGATAGAACTTTTCTTTAGCTTAATCATAGAGATTGGTTTGCAATCTCCCTATAACTGACCTGGTTCTGTAAATATTCTTACACTCTCAGTGTAAAAAACTTAAAACTAGTCCTGAGAAGGCCACAAGATCTGCACAGATGAGACATGCCATTATACGATAAACTTCTAATGCAGGTTATAGGATTATTGAAATGATAAAACTGACTCAGTAAATTACTTTTCAACATGTACTAAATTTCTGAAGTTCCATAAGGACGGAGGACTTGATATGGAGATGGGTGAGCAATTTAAAGTATTAACTAAGCTAGTGCTTTTTACCAGGTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAGGTAAATTGTTAACTTTGTGCAAGTTCTTTCTCTCAGGAGAGTTCCAAAGTGATTACTCAAGTGTCAATAGTAAACAAAGAGCTTTCGTTTTCTTTCTTCATTTATTTCTAAGTCAAAAATAAAATCAAAGAATCCTCACAATCATTGACATTCAATTTTTCATAATCCTCCTGCAGGATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTGGTAAAGTTCTTCAATTGCAGGACTTCAATTTTTTGGTCAAATCATTTAGATCACATTCAATCAATGACCATAATAGGGATAGGAGCTCCGCTGGAGATAGATAATTTGAGAACTTAACTTCTCTAATATTCTACGTAACATTCTAATTCCTGACAATGACCACAATAGGGATGGAGCTATGTTGGAG</genome_strand>
        <mrna_strand>GAGGGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAG................................................................................................................................................................................GATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGNGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTG........................................................................................................................................................................GGATGGAGCTATGTTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E299176" ref_strand="+" ref_description="SGN-E299176 [cLET-42-J8]">
      <seq>aattctccatcacgtatgatgcatggtcaaaaaaaaaaaagaacttctatctagctactttttcttctgaattctatggttgcaagaaaattcacaaatgctaaggctaaatttatatggctccatagtttctagtccgatagaagtcaacaaaagctgccgctcgtggatcattttatcgaacaaagcaacgattgtatgtcggaggaacattcgagttaaagccctgaaagatgggatgaacggtggcacgaatggcagtggattaggtggtcgtagttgggacccaggcttggaaattgaggtgccatttgaacaaaggccggtgaatgagtactcatctctgaaagatgaaactttatactcttgggcagaactgggtccaggggccttcttcctacgtctcggaggactttggttagtcactttcgcagttttgggagtacctattgctgctgcaagcttcaatccttcaaaggatcctttaagatttctcctggctgcaagtacggggactctttttcttgttgcactgattgtcctaagaatttatctgggatggagctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="121411" stop="119585"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121111" g_stop="120787" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120786" i_stop="120302" i_length="485">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.115" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120301" g_stop="120149" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="478" r_length="153" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120148" i_stop="119973" i_length="176">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119972" g_stop="119895" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="556" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119894" i_stop="119727" i_length="168">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.341" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119726" g_stop="119715" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="568" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E299176" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299176" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121111" e_stop="120787"/>
          <exon e_start="120301" e_stop="120149"/>
          <exon e_start="119972" e_stop="119895"/>
          <exon e_start="119726" e_stop="119715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTCCATCACGTATGATGCATGGTCAAAAAAAAAAAAGAACTTCTATCTAGCTACTTTTTCTTCTGAATTCTATGGTTGCAAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCGGTATGTTCTCAATTCTTTGTATTCATTCCTGGCCTCATCCATTTGATCCAATCTGCAGAAATCAATAGAAAAGACTCATCTCAGTTCACATACTAGTTTAGATTTATACACTATTACTCTGATAGTGTAAAGATTTTATATGCTGTTCTTATTGTCCCACTTGTGATAGAACTTTTCTTTAGCTTAATCATAGAGATTGGTTTGCAATCTCCCTATAACTGACCTGGTTCTGTAAATATTCTTACACTCTCAGTGTAAAAAACTTAAAACTAGTCCTGAGAAGGCCACAAGATCTGCACAGATGAGACATGCCATTATACGATAAACTTCTAATGCAGGTTATAGGATTATTGAAATGATAAAACTGACTCAGTAAATTACTTTTCAACATGTACTAAATTTCTGAAGTTCCATAAGGACGGAGGACTTGATATGGAGATGGGTGAGCAATTTAAAGTATTAACTAAGCTAGTGCTTTTTACCAGGTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAGGTAAATTGTTAACTTTGTGCAAGTTCTTTCTCTCAGGAGAGTTCCAAAGTGATTACTCAAGTGTCAATAGTAAACAAAGAGCTTTCGTTTTCTTTCTTCATTTATTTCTAAGTCAAAAATAAAATCAAAGAATCCTCACAATCATTGACATTCAATTTTTCATAATCCTCCTGCAGGATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTGGTAAAGTTCTTCAATTGCAGGACTTCAATTTTTTGGTCAAATCATTTAGATCACATTCAATCAATGACCATAATAGGGATAGGAGCTCCGCTGGAGATAGATAATTTGAGAACTTAACTTCTCTAATATTCTACGTAACATTCTAATTCCTGACAATGACCACAATAGGGATGGAGCTAT</genome_strand>
        <mrna_strand>AATTCTCCATCACGTATGATGCATGGTCAAAAAAAAAAAAGAACTTCTATCTAGCTACTTTTTCTTCTGAATTCTATGGTTGCAAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGAGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAG................................................................................................................................................................................GATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTG........................................................................................................................................................................GGATGGAGCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E468893" ref_strand="+" ref_description="SGN-E468893 [cSTB-6-J15]">
      <seq>actttttcttctgaattctatggttgcaagaaaattcacaaatgctaaggctaaattcttatggctccatagtttctagtccgatagaagtcaatagaagctgccgctcgtggatcattttgtcgaacaaagcaacgattgtatgtcggaggaacattagagttaaagccctgaaagatgggatgaatggtggcaccaacggcagtggattaggtggtcgtagttgggaccctggcttggaaattgaggtgccatttgaacaaaggccggtgaatgagtactcatctctgaaagatgaaactttatactcttgggcggaattgggtccaggggccttcttcctacgtctcggaggactttggttaattacttttgcagttttgggagtacctattgctgctgcaagcttcaatccttcaaaggatcctttaagatttctcctggctgcaagtacagggactctttttcttgttgcactgattgtcctaagaatttatctgggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="121355" stop="119592"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121055" g_stop="120787" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120786" i_stop="120302" i_length="485">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.115" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120301" g_stop="120149" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="422" r_length="153" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120148" i_stop="119973" i_length="176">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.849" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119972" g_stop="119895" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="500" r_length="78" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E468893" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E468893" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121055" e_stop="120787"/>
          <exon e_start="120301" e_stop="120149"/>
          <exon e_start="119972" e_stop="119895"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTTTCTTCTGAATTCTATGGTTGCAAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCGGTATGTTCTCAATTCTTTGTATTCATTCCTGGCCTCATCCATTTGATCCAATCTGCAGAAATCAATAGAAAAGACTCATCTCAGTTCACATACTAGTTTAGATTTATACACTATTACTCTGATAGTGTAAAGATTTTATATGCTGTTCTTATTGTCCCACTTGTGATAGAACTTTTCTTTAGCTTAATCATAGAGATTGGTTTGCAATCTCCCTATAACTGACCTGGTTCTGTAAATATTCTTACACTCTCAGTGTAAAAAACTTAAAACTAGTCCTGAGAAGGCCACAAGATCTGCACAGATGAGACATGCCATTATACGATAAACTTCTAATGCAGGTTATAGGATTATTGAAATGATAAAACTGACTCAGTAAATTACTTTTCAACATGTACTAAATTTCTGAAGTTCCATAAGGACGGAGGACTTGATATGGAGATGGGTGAGCAATTTAAAGTATTAACTAAGCTAGTGCTTTTTACCAGGTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAGGTAAATTGTTAACTTTGTGCAAGTTCTTTCTCTCAGGAGAGTTCCAAAGTGATTACTCAAGTGTCAATAGTAAACAAAGAGCTTTCGTTTTCTTTCTTCATTTATTTCTAAGTCAAAAATAAAATCAAAGAATCCTCACAATCATTGACATTCAATTTTTCATAATCCTCCTGCAGGATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTG</genome_strand>
        <mrna_strand>ACTTTTTCTTCTGAATTCTATGGTTGCAAGAAAATTCACAAATGCTAAGGCTAAATTCTTATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAATAGAAGCTGCCGCTCGTGGATCATTTTGTCGAACAAAGCAACGATTGTATGTCGGAGGAACATTAGAGTTAAAGCCCTGAAAGATGGGATGAATGGTGGCACCAACGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCTGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCGGAATTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGAGGACTTTGGTTAATTACTTTTGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAG................................................................................................................................................................................GATCCTTTAAGATTTCTCCTGGCTGCAAGTACAGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E725778" ref_strand="+" ref_description="SGN-E725778 [LA05CF06]">
      <seq>catggtcaaaaaaaaaaaaaaacttctatctagctactttttcttctgaattctatggttgcaaaaaaattcacaaatgctaaggctaaatttatatggctccatagtttctagtccgataaaagtcaacaaaagctgccgctcggggatcattttatcgaacaaagcaccgatggtttgtcggaggaacattcgagttaaagccctgaaagatgggataaacggtggcacaaatggcaggggattaggtggtcgtagttgggacccaggcttgaaaattgaggtgccatttgaacaaaggccggtgaatgagtactcatctctgaaagatgaaactttatactcttgggcagaactgggtccaggggccttcttcctacgtctggggggactttggttagtcactttcgcagttttgggagtacctatggctgctgcaagcttcaatccttcaaaggatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="121390" stop="119848"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121090" g_stop="120787" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="304" r_length="304" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120786" i_stop="120302" i_length="485">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.115" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120301" g_stop="120149" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="457" r_length="153" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120148" i_stop="119973" i_length="176">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.849" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119972" g_stop="119967" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="463" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E725778" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121090" e_stop="120787"/>
          <exon e_start="120301" e_stop="120149"/>
          <exon e_start="119972" e_stop="119967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGTCAAAAAAAAAAAAGAACTTCTATCTAGCTACTTTTTCTTCTGAATTCTATGGTTGCAAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCGGTATGTTCTCAATTCTTTGTATTCATTCCTGGCCTCATCCATTTGATCCAATCTGCAGAAATCAATAGAAAAGACTCATCTCAGTTCACATACTAGTTTAGATTTATACACTATTACTCTGATAGTGTAAAGATTTTATATGCTGTTCTTATTGTCCCACTTGTGATAGAACTTTTCTTTAGCTTAATCATAGAGATTGGTTTGCAATCTCCCTATAACTGACCTGGTTCTGTAAATATTCTTACACTCTCAGTGTAAAAAACTTAAAACTAGTCCTGAGAAGGCCACAAGATCTGCACAGATGAGACATGCCATTATACGATAAACTTCTAATGCAGGTTATAGGATTATTGAAATGATAAAACTGACTCAGTAAATTACTTTTCAACATGTACTAAATTTCTGAAGTTCCATAAGGACGGAGGACTTGATATGGAGATGGGTGAGCAATTTAAAGTATTAACTAAGCTAGTGCTTTTTACCAGGTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAGGTAAATTGTTAACTTTGTGCAAGTTCTTTCTCTCAGGAGAGTTCCAAAGTGATTACTCAAGTGTCAATAGTAAACAAAGAGCTTTCGTTTTCTTTCTTCATTTATTTCTAAGTCAAAAATAAAATCAAAGAATCCTCACAATCATTGACATTCAATTTTTCATAATCCTCCTGCAGGATCCT</genome_strand>
        <mrna_strand>CATGGTCAAAAAAAAAAAAAAACTTCTATCTAGCTACTTTTTCTTCTGAATTCTATGGTTGCAAAAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAAAAGTCAACAAAAGCTGCCGCTCGGGGATCATTTTATCGAACAAAGCACCGATGGTTTGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATAAACGGTGGCACAAATGGCAGGGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGAAAATTGAGGTGCCATTTGAACAAAGGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTGGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATGGCTGCTGCAAGCTTCAATCCTTCAAAG................................................................................................................................................................................GATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E368226" ref_strand="+" ref_description="SGN-E368226 [TUS-26-I14]">
      <seq>ttgcaagaaaattcacaaatgctaaggctaaatttatatggctccatagtttctagtccgatagaagtcaacaaaagctgccgctcgtggatcattttatcgaacaaagcaacgattgtatgtcggaggaacattcgagttaaagccctgaaagatgggatgaacggaggcacgaatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="121332" stop="120554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121032" g_stop="120854" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E368226" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>179</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121032" e_stop="120854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCAAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGG</genome_strand>
        <mrna_strand>TTGCAAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGAGGCACGAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E735756" ref_strand="+" ref_description="SGN-E735756 [LC02DE11]">
      <seq>cggtcaaaaaaaaaaaaaaacttctatctagctactttttcttctgaattctatggttgcaaaaaaattcacaaatgctaaggctaaatttatatggctccatagtttctagtccgataaaagtcaacaaaagctgccgctcggggatcattttatcgaacaaagcaacgattgtatgtcggaggaacattcaagttaaagccctgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="121387" stop="120580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121088" g_stop="120879" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E735756" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>210</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735756" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121088" e_stop="120879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTCAAAAAAAAAAAAGAACTTCTATCTAGCTACTTTTTCTTCTGAATTCTATGGTTGCAAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAG</genome_strand>
        <mrna_strand>CGGTCAAAAAAAAAAAAAAACTTCTATCTAGCTACTTTTTCTTCTGAATTCTATGGTTGCAAAAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAAAAGTCAACAAAAGCTGCCGCTCGGGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCAAGTTAAAGCCCTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E735350" ref_strand="+" ref_description="SGN-E735350 [LC01AF10]">
      <seq>cgtttaaaaaaaaaaaaacttctatctagctactttttcttctgaattctatggttgcaaaaaaattcacaaatgctaaggctaaatttatatggctccatagtttctagtccgataaaagtcaacaaaagctgccgctcgtggatcattttatcaaacaaagcaacaattgtatgtcggaggaacattcaagttaaagccctgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="121386" stop="120580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121087" g_stop="120879" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E735350" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>209</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121087" e_stop="120879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCAAAAAAAAAAAAGAACTTCTATCTAGCTACTTTTTCTTCTGAATTCTATGGTTGCAAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAG</genome_strand>
        <mrna_strand>CGTTTAAAAAAAAAAA-AACTTCTATCTAGCTACTTTTTCTTCTGAATTCTATGGTTGCAAAAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAAAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCAAACAAAGCAACAATTGTATGTCGGAGGAACATTCAAGTTAAAGCCCTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E735838" ref_strand="+" ref_description="SGN-E735838 [LC03BD04]">
      <seq>cggtcaaaaaaaaaagaacttctatctagctactttttcttctgaattctatggttgcaagaaaattcacaaatgctaaggctaaatttatatggctccatagtttctagtccgataaaagtcaacaaaagctgccgctcgtggatcattttatcgaacaaagcaacgattgtatgtcggaggaacattcaagttaaagccctgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="121381" stop="120580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121088" g_stop="120880" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E735838" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>209</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735838" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121088" e_stop="120880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTCAAAAAAAAAAAAGAACTTCTATCTAGCTACTTTTTCTTCTGAATTCTATGGTTGCAAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAA</genome_strand>
        <mrna_strand>CGGTCAAAA-AAAA-AAGAACTTCTATCTAGCTACTTTTTCTTCTGAATTCTATGGTTGCAAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAAAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCAAGTTAAAGCCCTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E739164" ref_strand="+" ref_description="SGN-E739164 [LC16BE08]">
      <seq>cgttaaaaaaaaaaagaacttctatctagctactttttcttctgaattctatggttgcaagaaaattcacaaatgctaaggctaaatttatatggctccatagtttctagtccgatagaagtcaacaaaagctgccgctcgtggatcattttatcgaacaaagcaacgattgtatgtcggaggaacattcgagttaaagccctgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="121382" stop="120580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121087" g_stop="120880" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E739164" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>208</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121087" e_stop="120880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCAAAAAAAAAAAAGAACTTCTATCTAGCTACTTTTTCTTCTGAATTCTATGGTTGCAAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAA</genome_strand>
        <mrna_strand>CGTTAA-AAAAAAAAAGAACTTCTATCTAGCTACTTTTTCTTCTGAATTCTATGGTTGCAAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E735378" ref_strand="+" ref_description="SGN-E735378 [LC01BD04]">
      <seq>gtcaaaaaaaaaagaacttctatctagctactttttcttctgaattctatggttgcaagaaaattcacaaatgctaaggctaaatttatatggctccatagtttctagtccgatagaagtcaacaaaagctgccgctcgtggatcattttatcgaacaaagcaacgattgtatgtcggaggaacattcgagttaaagccctgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="121381" stop="120580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121084" g_stop="120880" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E735378" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>205</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735378" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121084" e_stop="120880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAAAAAAAAAGAACTTCTATCTAGCTACTTTTTCTTCTGAATTCTATGGTTGCAAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAA</genome_strand>
        <mrna_strand>GTCAAAAAAAAAAGAACTTCTATCTAGCTACTTTTTCTTCTGAATTCTATGGTTGCAAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E474853" ref_strand="+" ref_description="SGN-E474853 [cSTB-38-M9]">
      <seq>atcgatttctccatcaggaagaagatgaagagcaaaggtagattagttggacaaagatggtggagcataaggggcttaccttcagtatttctgctatgtcttttcttcttcctcgccggtttattcggttctactctcatttctcatcaggatgtacaactacttactgtacggcctaagtcgagggtgcttgaatctgtggaagaatttgatgttttgcctaatggcgacactggagaacattccctcacttccatcccctttcaggtcttaagctggttcccacgtgcattatactttcccaatttcgcaactatagaacaatgccaaggcattattaagatggcaaaggcagatctgaaaccatcatctttggctctccgcaaaggagaaacagcagagaataccaaaggaattagaacaagttctggtatgtttatcagtgcatctgaagacaaaactggaattctggacctcattgaggagaaaatcgcaaaggcgactatgatccccaggacacacggagagctgtcacatggtgtagtctgtatgtattcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="126494" stop="129728"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126794" g_stop="126943" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126944" i_stop="127013" i_length="70">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="0.637" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127014" g_stop="127130" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="267" r_length="117" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="127131" i_stop="128017" i_length="887">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.949" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128018" g_stop="128175" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="425" r_length="158" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128176" i_stop="128539" i_length="364">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128540" g_stop="128642" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="528" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128643" i_stop="129397" i_length="755">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="129398" g_stop="129428" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="559" r_length="31" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E474853" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E474853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126794" e_stop="126943"/>
          <exon e_start="127014" e_stop="127130"/>
          <exon e_start="128018" e_stop="128175"/>
          <exon e_start="128540" e_stop="128642"/>
          <exon e_start="129398" e_stop="129428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGGATTCGCCATCAGGAAGAAGATGAAGAGCAAAGGTAGATTAGTGGGACAAAGATGGCGGAGCATAGGGGGCTTACCTTCAATATTTCTGCTATGTCTTTTCTTGTTCTTCGCCGGTTTATTCGGTTCTACTCTCGTTTCTCATCAGGTATTTCCCTTATTATTTGCTAGACGCCTCTGTCATATGCGTTTCTAATCAAAGTGTTTGGGTGTGATAGGATGTACAACTACTTACTGTACGGCCTAGGTCAAGGGTGCTTAAATCTGTGGAAGAATTTGATGTTTTGCCTAATGGCGACACTGGAGAACACTCCCTTACTTCCATCCCCTTCCAGGTATATTTCATTGCTCAGTTCTCCTTGCTGAATTAGCGCTGGTTCGATTTCAAGTCTAACCGTTTTTGTTTGAAAAATTGTTCATACTGTAGTTGAACTTACATTAGTCCGCCAAGCTTTTTAATTATTGTTTCGATGTTCTCCTGGATTTGCACTTTTGGTTGGTTGATATGCGGATTTTCTCATAGCTATTTTATTTTGATTATCAACCGTTGAGATTGTTGCCGCTGATGCAATAATATTACTTTTCTTAATGTTGAAGTAGCATAACTTGATTTTTTCGGTAAGTAAACCAGATAGATAATGGCACAGCCCATTTGAATTGGTTTAAAAGTCGAGCAAATTACTTATCAATTTTTGACAAAAATAAAAAATAATTTAAAATAACTGAAATTGACTTAAAATAAATCAAAAATGACTTGAAATAAGTGAAAAATAAATTAAGATAGGTCTTCCTTGCTTTTTATTTTTTTAACTTGTTAAGTCATTTCCGTTTGACTTTTTAATTTCAACTTAAATAACTATTTTTGTAAGCCAATTCAAACGTGTTCTAAGTAAGTTTAAGAACAAATATGCATACTCTAATTTCTCTTATTCTGCCACTTCATCTACACTTTCTGCTTATATTTCTATGATTCCTGTTTTTCTATGGTTGACTGGGGGAAGATTTGTGTGGAGGAAGCAGTGAAGTAGGCATGTCATTAAGTCTATAGGCAAAATAGCTGGTAGCTGTGACTGATCATGTTAGCTTCCTAAACATAAACCTAAGCTGGTAAAAATTTTGTTCATGGTACTCATTGACTATAAAGTCTAGTATCTCTGATTTGCATTAGTATTCATTTGTTTTGGTTTATCTTATTTGACATCGACTTCAATCTTTTGGGTAGGTCTTAAGCTGGTTCCCACGTGCATTATACTTTCCCAATTTCGCAACTACAGAACAATGCCAAGGCATAATTAAGATGGCAAAGGCAGAACTGAAACCATCATCTTTGGCTCTCCGCAAAGGAGAAACAGCAGAAAATACCAAAGGAGTTAGAACAAGGTAAACAATACTCTGGTGTTCTATGTGTCCTGACTGATGTTTTGTCATAAATGCAATCTTTTCACTCTTTCCAAGCATTAGATTTAACTCTTAATACACTCATACTTCCATAATATCTATTTCTAGTAGACAAGATAAATATGTCACCAAAATTGAGTGTGTTCACATACATTTTCTACTTTTTTGGAAGATAAAATTGTTCATGGTGTTTGAACTGGCCATATGTCTCTGTCCTTTTTCAGGTCATTTGTTTTATATTTCTTTGATCTGTTGTCAAGACTATTTGATAAAAGTTTGCTGCCTCTTTTGGTTTTGACATGAAGTTACAATTTGAATGACTTTTGCTTTTCCCCCTTTCCCACAGTTCTGGTATGTTTATCAGTGCATCTGAAGACAAAACTGGAATTCTGGACCTCATTGAGGAGAAAATCGCAAAGGCGACTATGATCCCCAGGACACACGGAGAGGTGAATTTCATTTAAAACACACATCTTAAATATGACGCATGAAGTGGTTCTTACTGTGTATTAGTTTTATCATTCCATCCACACCTCAGAAATTGGATCTCAATAGAGGACATAATAGTTGTATTATTGGTGGGGAATCATTTTCCCAAGCTTCTTCATTTCCTTCCTCTTCTTCATCTTCTATTTTCTTGAAAACTATGTTGATTCAAGCTCTGGTTCTACTTCTACAAAATGCTGGACAACTATATTAGTGATTTTAGGTTTCCACTAGCAAATGCATTCTTCCAATTGTTATCAACACTGAAGAAAACAAGTCTTTTGGTGTTGGAGGTAAATATTAACTGGTTGTACAATCACATTTTTTTTTACCAGATTTAAGGCCATATATGTCAAACACCAAACATATTTTGGTCTTCGTGTTCTTTTCACCTCATATCTGAAAATTTAAATGGGTATCTGCTGCGGAAAGATGGAATTGGTCTGCTTTTGTTTTTGGACAGATCAGTATGTGTTAGCAATGGCAAGATTAAATTGACACTACAATGATCATTGAATGGAAATGATATGATTATTTTTTGTCCGAATCATTCATACCGTACCAATATAGATTTTTGTCAAAGGTTTCACATGGAAATTTAACTTGAAAATCCTATATATATTTCCATTTGAAAGCTTTTTGTTCCAATTTTACTTATGCAAAAGAGCTCATTCGATGTAATTGACGGTTCGTTTCCTCTTCTATATGAACTATCCAGCTGTCACATGGTCTAGTCTGTATGTATTCTA</genome_strand>
        <mrna_strand>ATCGATTTCTCCATCAGGAAGAAGATGAAGAGCAAAGGTAGATTAGTTGGACAAAGATGGTGGAGCATAAGGGGCTTACCTTCAGTATTTCTGCTATGTCTTTTCTTCTTCCTCGCCGGTTTATTCGGTTCTACTCTCATTTCTCATCAG......................................................................GATGTACAACTACTTACTGTACGGCCTAAGTCGAGGGTGCTTGAATCTGTGGAAGAATTTGATGTTTTGCCTAATGGCGACACTGGAGAACATTCCCTCACTTCCATCCCCTTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTAAGCTGGTTCCCACGTGCATTATACTTTCCCAATTTCGCAACTATAGAACAATGCCAAGGCATTATTAAGATGGCAAAGGCAGATCTGAAACCATCATCTTTGGCTCTCCGCAAAGGAGAAACAGCAGAGAATACCAAAGGAATTAGAACAAG............................................................................................................................................................................................................................................................................................................................................................................TTCTGGTATGTTTATCAGTGCATCTGAAGACAAAACTGGAATTCTGGACCTCATTGAGGAGAAAATCGCAAAGGCGACTATGATCCCCAGGACACACGGAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCACATGGTGTAGTCTGTATGTATTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E441739" ref_strand="+" ref_description="SGN-E441739 [cSTA-31-A18]">
      <seq>tcaggaagaagatgaagagcaaaggtagattcgttggacaaagatggtggagcataaggggcttaccttcagtatttctgctatgtcttttcttcttcctcgccggtttattcggttctactctcatttctcatcaggatgtacaactacttactgtacggcctaggtcgagggtgcttgaatctgtggaagaatttgatgttttgcctaatggcgacactggagaacattccctcacttccatcccctttcaggtcttaagctggttcccacgtgcattatactttcccaatttcgcaactatagaacaatgccaaggcattattaagatggcaaaggcagatctgaaaccatcatctttggctctccgcaaaggagaaacagcagagaataccaaaggaattagaacaagttctggtatgtttatcagtgcatctgaagacaaaactggaattctggacctcattgaggagaaaatcgcaaaggcgactatgatccccaggacacacggagaggcatttaatgttttgcggtacgaaaccggccagagttatcattcgcattatgatgcgttttgatccttctcaatatggtcctcagaagagccaaagggttgcatccttttttgttgtatttatctgatgtggaagaaggtggagaaaccatgttccctttcgagagtgcacagaatatggatgctaattatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="126507" stop="131030"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126807" g_stop="126943" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126944" i_stop="127013" i_length="70">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="0.637" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127014" g_stop="127130" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="254" r_length="117" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="127131" i_stop="128017" i_length="887">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.949" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128018" g_stop="128175" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="412" r_length="158" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128176" i_stop="128539" i_length="364">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128540" g_stop="128642" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="515" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128643" i_stop="129833" i_length="1191">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="129834" g_stop="129929" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="612" r_length="97" r_score="0.938"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129930" i_stop="130546" i_length="617">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.383" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="130547" g_stop="130612" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="679" r_length="67" r_score="0.955"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="130613" i_stop="130701" i_length="89">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.942" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="130702" g_stop="130730" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="680" r_stop="708" r_length="29" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E441739" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E441739" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126807" e_stop="126943"/>
          <exon e_start="127014" e_stop="127130"/>
          <exon e_start="128018" e_stop="128175"/>
          <exon e_start="128540" e_stop="128642"/>
          <exon e_start="129834" e_stop="129929"/>
          <exon e_start="130547" e_stop="130612"/>
          <exon e_start="130702" e_stop="130730"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGGAAGAAGATGAAGAGCAAAGGTAGATTAGTGGGACAAAGATGGCGGAGCATAGGGGGCTTACCTTCAATATTTCTGCTATGTCTTTTCTTGTTCTTCGCCGGTTTATTCGGTTCTACTCTCGTTTCTCATCAGGTATTTCCCTTATTATTTGCTAGACGCCTCTGTCATATGCGTTTCTAATCAAAGTGTTTGGGTGTGATAGGATGTACAACTACTTACTGTACGGCCTAGGTCAAGGGTGCTTAAATCTGTGGAAGAATTTGATGTTTTGCCTAATGGCGACACTGGAGAACACTCCCTTACTTCCATCCCCTTCCAGGTATATTTCATTGCTCAGTTCTCCTTGCTGAATTAGCGCTGGTTCGATTTCAAGTCTAACCGTTTTTGTTTGAAAAATTGTTCATACTGTAGTTGAACTTACATTAGTCCGCCAAGCTTTTTAATTATTGTTTCGATGTTCTCCTGGATTTGCACTTTTGGTTGGTTGATATGCGGATTTTCTCATAGCTATTTTATTTTGATTATCAACCGTTGAGATTGTTGCCGCTGATGCAATAATATTACTTTTCTTAATGTTGAAGTAGCATAACTTGATTTTTTCGGTAAGTAAACCAGATAGATAATGGCACAGCCCATTTGAATTGGTTTAAAAGTCGAGCAAATTACTTATCAATTTTTGACAAAAATAAAAAATAATTTAAAATAACTGAAATTGACTTAAAATAAATCAAAAATGACTTGAAATAAGTGAAAAATAAATTAAGATAGGTCTTCCTTGCTTTTTATTTTTTTAACTTGTTAAGTCATTTCCGTTTGACTTTTTAATTTCAACTTAAATAACTATTTTTGTAAGCCAATTCAAACGTGTTCTAAGTAAGTTTAAGAACAAATATGCATACTCTAATTTCTCTTATTCTGCCACTTCATCTACACTTTCTGCTTATATTTCTATGATTCCTGTTTTTCTATGGTTGACTGGGGGAAGATTTGTGTGGAGGAAGCAGTGAAGTAGGCATGTCATTAAGTCTATAGGCAAAATAGCTGGTAGCTGTGACTGATCATGTTAGCTTCCTAAACATAAACCTAAGCTGGTAAAAATTTTGTTCATGGTACTCATTGACTATAAAGTCTAGTATCTCTGATTTGCATTAGTATTCATTTGTTTTGGTTTATCTTATTTGACATCGACTTCAATCTTTTGGGTAGGTCTTAAGCTGGTTCCCACGTGCATTATACTTTCCCAATTTCGCAACTACAGAACAATGCCAAGGCATAATTAAGATGGCAAAGGCAGAACTGAAACCATCATCTTTGGCTCTCCGCAAAGGAGAAACAGCAGAAAATACCAAAGGAGTTAGAACAAGGTAAACAATACTCTGGTGTTCTATGTGTCCTGACTGATGTTTTGTCATAAATGCAATCTTTTCACTCTTTCCAAGCATTAGATTTAACTCTTAATACACTCATACTTCCATAATATCTATTTCTAGTAGACAAGATAAATATGTCACCAAAATTGAGTGTGTTCACATACATTTTCTACTTTTTTGGAAGATAAAATTGTTCATGGTGTTTGAACTGGCCATATGTCTCTGTCCTTTTTCAGGTCATTTGTTTTATATTTCTTTGATCTGTTGTCAAGACTATTTGATAAAAGTTTGCTGCCTCTTTTGGTTTTGACATGAAGTTACAATTTGAATGACTTTTGCTTTTCCCCCTTTCCCACAGTTCTGGTATGTTTATCAGTGCATCTGAAGACAAAACTGGAATTCTGGACCTCATTGAGGAGAAAATCGCAAAGGCGACTATGATCCCCAGGACACACGGAGAGGTGAATTTCATTTAAAACACACATCTTAAATATGACGCATGAAGTGGTTCTTACTGTGTATTAGTTTTATCATTCCATCCACACCTCAGAAATTGGATCTCAATAGAGGACATAATAGTTGTATTATTGGTGGGGAATCATTTTCCCAAGCTTCTTCATTTCCTTCCTCTTCTTCATCTTCTATTTTCTTGAAAACTATGTTGATTCAAGCTCTGGTTCTACTTCTACAAAATGCTGGACAACTATATTAGTGATTTTAGGTTTCCACTAGCAAATGCATTCTTCCAATTGTTATCAACACTGAAGAAAACAAGTCTTTTGGTGTTGGAGGTAAATATTAACTGGTTGTACAATCACATTTTTTTTTACCAGATTTAAGGCCATATATGTCAAACACCAAACATATTTTGGTCTTCGTGTTCTTTTCACCTCATATCTGAAAATTTAAATGGGTATCTGCTGCGGAAAGATGGAATTGGTCTGCTTTTGTTTTTGGACAGATCAGTATGTGTTAGCAATGGCAAGATTAAATTGACACTACAATGATCATTGAATGGAAATGATATGATTATTTTTTGTCCGAATCATTCATACCGTACCAATATAGATTTTTGTCAAAGGTTTCACATGGAAATTTAACTTGAAAATCCTATATATATTTCCATTTGAAAGCTTTTTGTTCCAATTTTACTTATGCAAAAGAGCTCATTCGATGTAATTGACGGTTCGTTTCCTCTTCTATATGAACTATCCAGCTGTCACATGGTCTAGTCTGTATGTATTCTAACAAGAGACCATGACAAAACAATGAGGCAACAGATCAAGGTGTGCATTTTAACAGGAAGTTAGAGAACTGAACATCTCTTGCTGCTGTATACTTTAATTTATAGTTGGGGATATCTGGCTTTTGAGTATTATCTGAAACTGGAGTTCTTTTGCTGGATTCCCGGATATTTGTTCGATTTCGTCCTAGAATTGAGTCAAATGTGATGATGCAAATAATTCTTGCTATGTACATTATGCATCTGATAAATAATAGGTAGTCAGGCTGTAACCCCTTTGTGTCTGGACTTTCTCTTATTTTCATATAGTGATTCTGAATGATTTTTCTGTTAATGAAAGCTCCAAGTATGGTGTACAGTGATCATAATTGCTGTTTAACTTGAATCAGTTGACCTGTGCGTTTTTCAGGCATTTAATGTTTTGCGGTACGAAATAGGCCAGAGTTATTATTCACATTATGATGCG-TTTGATCCTTCTCAATATGGTCCTCAGAAGAGCCAAAGGGTATGCACTATCTACTTGGGTAAATTGTTGCTGTTAACTTTTCCAATTGACTTCTTAAATTTTTTACTAGCTCAATTCTTGCACAAACTAGCATAATGAATGGTGCATGGATTTGAGTGTTTGGTTATTGGGATAAGATGGTGTTGTTTTTCATATGCATGTTTCTTCCAATCCTCCTCCATCAAAAATATTTTTAGAATGGGGAAAATAAAGTTTGTTTGAAGCTATGGTTCATAAGACACTAGTTTGCAGATCCATTTCAATGACTTAATTTATACATGGAATCACCAATGGTGTGTTATCTGGATCACCACAAGGTGTATACAGCATTTCTTCCATTTAGAACTTTGTGGAACCCACATTAGTTTTATCCTTAATAAGCATATAGTTTTATCCGTTATATACATCTCTTTTTCTTTTATTTTCGCCCCTTTTGATGAAAAAGTTCTGTTTTTTGTCATCGATCCTTACATAACCATCATTTGTGGAGTGTTTAGAGCAAGTGTGCCATAGACTATAACTATGAAATTTGACATTTCATAATAGCTCAAATTGCAGTTAATTTTGAGTAATGATTATTTTCAGGGCCAGTCTAAAAATAATGTATTTTCATTTAGGTTGCATCC-TTTTTGTTATATTTATCTGATGTGGAAGAAGGTGGAGAAACCATGTTCCCTTTCGAGGTGAGTTCAAAGTTGTTTCTTCTTTCGTGGACTATTATTATATTTCTGCCTCTCATGTCGTGTAAATAAGTCCTTTGGTTAATTTACAGAATGCACAGAATATGGATGTTAATTATGA</genome_strand>
        <mrna_strand>TCAGGAAGAAGATGAAGAGCAAAGGTAGATTCGTTGGACAAAGATGGTGGAGCATAAGGGGCTTACCTTCAGTATTTCTGCTATGTCTTTTCTTCTTCCTCGCCGGTTTATTCGGTTCTACTCTCATTTCTCATCAG......................................................................GATGTACAACTACTTACTGTACGGCCTAGGTCGAGGGTGCTTGAATCTGTGGAAGAATTTGATGTTTTGCCTAATGGCGACACTGGAGAACATTCCCTCACTTCCATCCCCTTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTAAGCTGGTTCCCACGTGCATTATACTTTCCCAATTTCGCAACTATAGAACAATGCCAAGGCATTATTAAGATGGCAAAGGCAGATCTGAAACCATCATCTTTGGCTCTCCGCAAAGGAGAAACAGCAGAGAATACCAAAGGAATTAGAACAAG............................................................................................................................................................................................................................................................................................................................................................................TTCTGGTATGTTTATCAGTGCATCTGAAGACAAAACTGGAATTCTGGACCTCATTGAGGAGAAAATCGCAAAGGCGACTATGATCCCCAGGACACACGGAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTTAATGTTTTGCGGTACGAAACCGGCCAGAGTTATCATTCGCATTATGATGCGTTTTGATCCTTCTCAATATGGTCCTCAGAAGAGCCAAAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCATCCTTTTTTGTTGTATTTATCTGATGTGGAAGAAGGTGGAGAAACCATGTTCCCTTTCGAG.........................................................................................AGTGCACAGAATATGGATGCTAATTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E441740" ref_strand="+" ref_description="SGN-E441740 [cSTA-31-A18]">
      <seq>tcaggaagaagatgaagagcaaaggtagattcgttggacaaagatggtggagcataaggggcttaccttcagtatttctgctatgtcttttcttcttcctcgccggtttattcggttctactctcatttctcatcaggatgtacaactacttactgtacggcctaggtcgagggtgcttgaatctgtggaagaatttgatgttttgcctaatggcgacactggagaacattccctcacttccatcccctttcaggtcttaagctggttcccacgtgcattatactttcccaatttcgcaactatagaacaatgccaaggcattattaatatggcaaaggcagatctgaaaccatcatctttggctctccgcaaaggagaaacagcagagaataccaaaggaattagaacaagttgtggtatgtttatcagtgcatctgaagacaaaactggaattctggacctcattgaggaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="126507" stop="128901"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126807" g_stop="126943" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126944" i_stop="127013" i_length="70">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="0.637" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127014" g_stop="127130" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="254" r_length="117" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="127131" i_stop="128017" i_length="887">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.949" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128018" g_stop="128175" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="412" r_length="158" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128176" i_stop="128539" i_length="364">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.967" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128540" g_stop="128601" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="474" r_length="62" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E441740" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E441740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126807" e_stop="126943"/>
          <exon e_start="127014" e_stop="127130"/>
          <exon e_start="128018" e_stop="128175"/>
          <exon e_start="128540" e_stop="128601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGGAAGAAGATGAAGAGCAAAGGTAGATTAGTGGGACAAAGATGGCGGAGCATAGGGGGCTTACCTTCAATATTTCTGCTATGTCTTTTCTTGTTCTTCGCCGGTTTATTCGGTTCTACTCTCGTTTCTCATCAGGTATTTCCCTTATTATTTGCTAGACGCCTCTGTCATATGCGTTTCTAATCAAAGTGTTTGGGTGTGATAGGATGTACAACTACTTACTGTACGGCCTAGGTCAAGGGTGCTTAAATCTGTGGAAGAATTTGATGTTTTGCCTAATGGCGACACTGGAGAACACTCCCTTACTTCCATCCCCTTCCAGGTATATTTCATTGCTCAGTTCTCCTTGCTGAATTAGCGCTGGTTCGATTTCAAGTCTAACCGTTTTTGTTTGAAAAATTGTTCATACTGTAGTTGAACTTACATTAGTCCGCCAAGCTTTTTAATTATTGTTTCGATGTTCTCCTGGATTTGCACTTTTGGTTGGTTGATATGCGGATTTTCTCATAGCTATTTTATTTTGATTATCAACCGTTGAGATTGTTGCCGCTGATGCAATAATATTACTTTTCTTAATGTTGAAGTAGCATAACTTGATTTTTTCGGTAAGTAAACCAGATAGATAATGGCACAGCCCATTTGAATTGGTTTAAAAGTCGAGCAAATTACTTATCAATTTTTGACAAAAATAAAAAATAATTTAAAATAACTGAAATTGACTTAAAATAAATCAAAAATGACTTGAAATAAGTGAAAAATAAATTAAGATAGGTCTTCCTTGCTTTTTATTTTTTTAACTTGTTAAGTCATTTCCGTTTGACTTTTTAATTTCAACTTAAATAACTATTTTTGTAAGCCAATTCAAACGTGTTCTAAGTAAGTTTAAGAACAAATATGCATACTCTAATTTCTCTTATTCTGCCACTTCATCTACACTTTCTGCTTATATTTCTATGATTCCTGTTTTTCTATGGTTGACTGGGGGAAGATTTGTGTGGAGGAAGCAGTGAAGTAGGCATGTCATTAAGTCTATAGGCAAAATAGCTGGTAGCTGTGACTGATCATGTTAGCTTCCTAAACATAAACCTAAGCTGGTAAAAATTTTGTTCATGGTACTCATTGACTATAAAGTCTAGTATCTCTGATTTGCATTAGTATTCATTTGTTTTGGTTTATCTTATTTGACATCGACTTCAATCTTTTGGGTAGGTCTTAAGCTGGTTCCCACGTGCATTATACTTTCCCAATTTCGCAACTACAGAACAATGCCAAGGCATAATTAAGATGGCAAAGGCAGAACTGAAACCATCATCTTTGGCTCTCCGCAAAGGAGAAACAGCAGAAAATACCAAAGGAGTTAGAACAAGGTAAACAATACTCTGGTGTTCTATGTGTCCTGACTGATGTTTTGTCATAAATGCAATCTTTTCACTCTTTCCAAGCATTAGATTTAACTCTTAATACACTCATACTTCCATAATATCTATTTCTAGTAGACAAGATAAATATGTCACCAAAATTGAGTGTGTTCACATACATTTTCTACTTTTTTGGAAGATAAAATTGTTCATGGTGTTTGAACTGGCCATATGTCTCTGTCCTTTTTCAGGTCATTTGTTTTATATTTCTTTGATCTGTTGTCAAGACTATTTGATAAAAGTTTGCTGCCTCTTTTGGTTTTGACATGAAGTTACAATTTGAATGACTTTTGCTTTTCCCCCTTTCCCACAGTTCTGGTATGTTTATCAGTGCATCTGAAGACAAAACTGGAATTCTGGACCTCATTGAGGAGA</genome_strand>
        <mrna_strand>TCAGGAAGAAGATGAAGAGCAAAGGTAGATTCGTTGGACAAAGATGGTGGAGCATAAGGGGCTTACCTTCAGTATTTCTGCTATGTCTTTTCTTCTTCCTCGCCGGTTTATTCGGTTCTACTCTCATTTCTCATCAG......................................................................GATGTACAACTACTTACTGTACGGCCTAGGTCGAGGGTGCTTGAATCTGTGGAAGAATTTGATGTTTTGCCTAATGGCGACACTGGAGAACATTCCCTCACTTCCATCCCCTTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTAAGCTGGTTCCCACGTGCATTATACTTTCCCAATTTCGCAACTATAGAACAATGCCAAGGCATTATTAATATGGCAAAGGCAGATCTGAAACCATCATCTTTGGCTCTCCGCAAAGGAGAAACAGCAGAGAATACCAAAGGAATTAGAACAAG............................................................................................................................................................................................................................................................................................................................................................................TTGTGGTATGTTTATCAGTGCATCTGAAGACAAAACTGGAATTCTGGACCTCATTGAGGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E709282" ref_strand="+" ref_description="SGN-E709282 [FA51BA06]">
      <seq>cgggaagaagatgaagagcaaaggtagattagtgggacaaagatggcggagcatagggggcttaccttcaatatttctgctatgtcttttcttgttcttcgccggtttattcggttctactctcgtttctcatcaggatgtacaactacttactgtacggcctaggtcaagggtgcttaaatctgtggaagaatttgatgttttgcctaatggcgacactggagaacactcccttacttccatccccttccaggtcttaagctggttcccacgtgcattatactttcccaatttcgcaactacagaacaatgccaaggcataattaagatggcaaaggcagaactgaaaccatcatctttggctctccgcaaaggagaaacagcagaaaataccaaaggagttagaacaagttctggtatgtttatcagtgcatctgaagacaaaactggaattctggacctcattgaggagaaaatcgcaaaggcgactatgatccccaggacacacggagaggcatttaatgttttgcggtacgaaataggccagagttattattcacattatgatgcgtttgatccttctcaatatggtcctcagaagagccaaagggttgcatccctttttgttatatttatctgatgtggaagaaggtggagaaaccatgttccctttcgagaatgcacagaatatggatgttaattatgacttccgcaagtgtattggtctgaaagtgaagccgcgtagagggggatggactactattttactcgctgtttccaaatggtacaattgatccgacatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="126508" stop="131121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126808" g_stop="126943" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126944" i_stop="127013" i_length="70">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.637" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127014" g_stop="127130" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="253" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="127131" i_stop="128017" i_length="887">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128018" g_stop="128175" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="411" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128176" i_stop="128539" i_length="364">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128540" g_stop="128642" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="514" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128643" i_stop="129833" i_length="1191">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="129834" g_stop="129929" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="610" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129930" i_stop="130546" i_length="617">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.383" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="130547" g_stop="130612" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="677" r_length="67" r_score="0.970"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="130613" i_stop="130701" i_length="89">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="130702" g_stop="130821" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="678" r_stop="798" r_length="121" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E709282" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709282" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126808" e_stop="126943"/>
          <exon e_start="127014" e_stop="127130"/>
          <exon e_start="128018" e_stop="128175"/>
          <exon e_start="128540" e_stop="128642"/>
          <exon e_start="129834" e_stop="129929"/>
          <exon e_start="130547" e_stop="130612"/>
          <exon e_start="130702" e_stop="130821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGAAGAAGATGAAGAGCAAAGGTAGATTAGTGGGACAAAGATGGCGGAGCATAGGGGGCTTACCTTCAATATTTCTGCTATGTCTTTTCTTGTTCTTCGCCGGTTTATTCGGTTCTACTCTCGTTTCTCATCAGGTATTTCCCTTATTATTTGCTAGACGCCTCTGTCATATGCGTTTCTAATCAAAGTGTTTGGGTGTGATAGGATGTACAACTACTTACTGTACGGCCTAGGTCAAGGGTGCTTAAATCTGTGGAAGAATTTGATGTTTTGCCTAATGGCGACACTGGAGAACACTCCCTTACTTCCATCCCCTTCCAGGTATATTTCATTGCTCAGTTCTCCTTGCTGAATTAGCGCTGGTTCGATTTCAAGTCTAACCGTTTTTGTTTGAAAAATTGTTCATACTGTAGTTGAACTTACATTAGTCCGCCAAGCTTTTTAATTATTGTTTCGATGTTCTCCTGGATTTGCACTTTTGGTTGGTTGATATGCGGATTTTCTCATAGCTATTTTATTTTGATTATCAACCGTTGAGATTGTTGCCGCTGATGCAATAATATTACTTTTCTTAATGTTGAAGTAGCATAACTTGATTTTTTCGGTAAGTAAACCAGATAGATAATGGCACAGCCCATTTGAATTGGTTTAAAAGTCGAGCAAATTACTTATCAATTTTTGACAAAAATAAAAAATAATTTAAAATAACTGAAATTGACTTAAAATAAATCAAAAATGACTTGAAATAAGTGAAAAATAAATTAAGATAGGTCTTCCTTGCTTTTTATTTTTTTAACTTGTTAAGTCATTTCCGTTTGACTTTTTAATTTCAACTTAAATAACTATTTTTGTAAGCCAATTCAAACGTGTTCTAAGTAAGTTTAAGAACAAATATGCATACTCTAATTTCTCTTATTCTGCCACTTCATCTACACTTTCTGCTTATATTTCTATGATTCCTGTTTTTCTATGGTTGACTGGGGGAAGATTTGTGTGGAGGAAGCAGTGAAGTAGGCATGTCATTAAGTCTATAGGCAAAATAGCTGGTAGCTGTGACTGATCATGTTAGCTTCCTAAACATAAACCTAAGCTGGTAAAAATTTTGTTCATGGTACTCATTGACTATAAAGTCTAGTATCTCTGATTTGCATTAGTATTCATTTGTTTTGGTTTATCTTATTTGACATCGACTTCAATCTTTTGGGTAGGTCTTAAGCTGGTTCCCACGTGCATTATACTTTCCCAATTTCGCAACTACAGAACAATGCCAAGGCATAATTAAGATGGCAAAGGCAGAACTGAAACCATCATCTTTGGCTCTCCGCAAAGGAGAAACAGCAGAAAATACCAAAGGAGTTAGAACAAGGTAAACAATACTCTGGTGTTCTATGTGTCCTGACTGATGTTTTGTCATAAATGCAATCTTTTCACTCTTTCCAAGCATTAGATTTAACTCTTAATACACTCATACTTCCATAATATCTATTTCTAGTAGACAAGATAAATATGTCACCAAAATTGAGTGTGTTCACATACATTTTCTACTTTTTTGGAAGATAAAATTGTTCATGGTGTTTGAACTGGCCATATGTCTCTGTCCTTTTTCAGGTCATTTGTTTTATATTTCTTTGATCTGTTGTCAAGACTATTTGATAAAAGTTTGCTGCCTCTTTTGGTTTTGACATGAAGTTACAATTTGAATGACTTTTGCTTTTCCCCCTTTCCCACAGTTCTGGTATGTTTATCAGTGCATCTGAAGACAAAACTGGAATTCTGGACCTCATTGAGGAGAAAATCGCAAAGGCGACTATGATCCCCAGGACACACGGAGAGGTGAATTTCATTTAAAACACACATCTTAAATATGACGCATGAAGTGGTTCTTACTGTGTATTAGTTTTATCATTCCATCCACACCTCAGAAATTGGATCTCAATAGAGGACATAATAGTTGTATTATTGGTGGGGAATCATTTTCCCAAGCTTCTTCATTTCCTTCCTCTTCTTCATCTTCTATTTTCTTGAAAACTATGTTGATTCAAGCTCTGGTTCTACTTCTACAAAATGCTGGACAACTATATTAGTGATTTTAGGTTTCCACTAGCAAATGCATTCTTCCAATTGTTATCAACACTGAAGAAAACAAGTCTTTTGGTGTTGGAGGTAAATATTAACTGGTTGTACAATCACATTTTTTTTTACCAGATTTAAGGCCATATATGTCAAACACCAAACATATTTTGGTCTTCGTGTTCTTTTCACCTCATATCTGAAAATTTAAATGGGTATCTGCTGCGGAAAGATGGAATTGGTCTGCTTTTGTTTTTGGACAGATCAGTATGTGTTAGCAATGGCAAGATTAAATTGACACTACAATGATCATTGAATGGAAATGATATGATTATTTTTTGTCCGAATCATTCATACCGTACCAATATAGATTTTTGTCAAAGGTTTCACATGGAAATTTAACTTGAAAATCCTATATATATTTCCATTTGAAAGCTTTTTGTTCCAATTTTACTTATGCAAAAGAGCTCATTCGATGTAATTGACGGTTCGTTTCCTCTTCTATATGAACTATCCAGCTGTCACATGGTCTAGTCTGTATGTATTCTAACAAGAGACCATGACAAAACAATGAGGCAACAGATCAAGGTGTGCATTTTAACAGGAAGTTAGAGAACTGAACATCTCTTGCTGCTGTATACTTTAATTTATAGTTGGGGATATCTGGCTTTTGAGTATTATCTGAAACTGGAGTTCTTTTGCTGGATTCCCGGATATTTGTTCGATTTCGTCCTAGAATTGAGTCAAATGTGATGATGCAAATAATTCTTGCTATGTACATTATGCATCTGATAAATAATAGGTAGTCAGGCTGTAACCCCTTTGTGTCTGGACTTTCTCTTATTTTCATATAGTGATTCTGAATGATTTTTCTGTTAATGAAAGCTCCAAGTATGGTGTACAGTGATCATAATTGCTGTTTAACTTGAATCAGTTGACCTGTGCGTTTTTCAGGCATTTAATGTTTTGCGGTACGAAATAGGCCAGAGTTATTATTCACATTATGATGCGTTTGATCCTTCTCAATATGGTCCTCAGAAGAGCCAAAGGGTATGCACTATCTACTTGGGTAAATTGTTGCTGTTAACTTTTCCAATTGACTTCTTAAATTTTTTACTAGCTCAATTCTTGCACAAACTAGCATAATGAATGGTGCATGGATTTGAGTGTTTGGTTATTGGGATAAGATGGTGTTGTTTTTCATATGCATGTTTCTTCCAATCCTCCTCCATCAAAAATATTTTTAGAATGGGGAAAATAAAGTTTGTTTGAAGCTATGGTTCATAAGACACTAGTTTGCAGATCCATTTCAATGACTTAATTTATACATGGAATCACCAATGGTGTGTTATCTGGATCACCACAAGGTGTATACAGCATTTCTTCCATTTAGAACTTTGTGGAACCCACATTAGTTTTATCCTTAATAAGCATATAGTTTTATCCGTTATATACATCTCTTTTTCTTTTATTTTCGCCCCTTTTGATGAAAAAGTTCTGTTTTTTGTCATCGATCCTTACATAACCATCATTTGTGGAGTGTTTAGAGCAAGTGTGCCATAGACTATAACTATGAAATTTGACATTTCATAATAGCTCAAATTGCAGTTAATTTTGAGTAATGATTATTTTCAGGGCCAGTCTAAAAATAATGTATTTTCATTTAGGTTGCAT-CCTTTTTGTTATATTTATCTGATGTGGAAGAAGGTGGAGAAACCATGTTCCCTTTCGAGGTGAGTTCAAAGTTGTTTCTTCTTTCGTGGACTATTATTATATTTCTGCCTCTCATGTCGTGTAAATAAGTCCTTTGGTTAATTTACAGAATGCACAGAATATGGATGTTAATTATGACTTCCGCAAGTGTATTGGTCTGAAAGTGAAGCCGCGTAGA-GGGGATGGACTACTATTTTACTCGCTGTTTCCAAATGGTACAATTGATCCG</genome_strand>
        <mrna_strand>CGGGAAGAAGATGAAGAGCAAAGGTAGATTAGTGGGACAAAGATGGCGGAGCATAGGGGGCTTACCTTCAATATTTCTGCTATGTCTTTTCTTGTTCTTCGCCGGTTTATTCGGTTCTACTCTCGTTTCTCATCAG......................................................................GATGTACAACTACTTACTGTACGGCCTAGGTCAAGGGTGCTTAAATCTGTGGAAGAATTTGATGTTTTGCCTAATGGCGACACTGGAGAACACTCCCTTACTTCCATCCCCTTCCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTAAGCTGGTTCCCACGTGCATTATACTTTCCCAATTTCGCAACTACAGAACAATGCCAAGGCATAATTAAGATGGCAAAGGCAGAACTGAAACCATCATCTTTGGCTCTCCGCAAAGGAGAAACAGCAGAAAATACCAAAGGAGTTAGAACAAG............................................................................................................................................................................................................................................................................................................................................................................TTCTGGTATGTTTATCAGTGCATCTGAAGACAAAACTGGAATTCTGGACCTCATTGAGGAGAAAATCGCAAAGGCGACTATGATCCCCAGGACACACGGAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTTAATGTTTTGCGGTACGAAATAGGCCAGAGTTATTATTCACATTATGATGCGTTTGATCCTTCTCAATATGGTCCTCAGAAGAGCCAAAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCATCCCTTTTTGTTATATTTATCTGATGTGGAAGAAGGTGGAGAAACCATGTTCCCTTTCGAG.........................................................................................AATGCACAGAATATGGATGTTAATTATGACTTCCGCAAGTGTATTGGTCTGAAAGTGAAGCCGCGTAGAGGGGGATGGACTACTATTTTACTCGCTGTTTCCAAATGGTACAATTGATCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E597678" ref_strand="-" ref_description="SGN-E597678 [67549]">
      <seq>cctgtgcgtttttcaggcatttaatgttttgcggtacgaaaccggccagagttatcattcgcattatgatgcgtttgatccttctcaatatggtcctcagaagagccaaagggttgcatcctttttgttgtatttatctgaatgtggaagaaggtgntgagaaaccatgttccctttcgagagtgcacagaatatggatgctaattatgacttccgcaagtgtattggtctgaaagtgaagccgcgtagaggggatggactactattttactcgctgtttccaaatggtacaattgacccgacatcaattcacgggagctgtgcagtaatccgaggtgaaaaatgggttgccacaaagtggatcagggatcaagaaatggatgaataaacgagtacatgtctcgaagtggtgttgatataattcttttgtaatttaatgtagtgactcactaggattttgaaacgagttttgcagtaaatatatctagtgttcgttcaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="129518" stop="132145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129818" g_stop="129929" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="129930" i_stop="130546" i_length="617">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.383" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130547" g_stop="130612" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="181" r_length="69" r_score="0.894"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="130613" i_stop="130701" i_length="89">
            <donor d_prob="0.998" d_score="0.87"/>
            <acceptor a_prob="0.942" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="130702" g_stop="130821" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="301" r_length="120" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="130822" i_stop="131646" i_length="825">
            <donor d_prob="0.879" d_score="0.98"/>
            <acceptor a_prob="0.890" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="131647" g_stop="131850" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="505" r_length="204" r_score="0.892"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E597678" ref_strand="-">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E597678" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="129818" e_stop="129929"/>
          <exon e_start="130547" e_stop="130612"/>
          <exon e_start="130702" e_stop="130821"/>
          <exon e_start="131647" e_stop="131850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGTGCGTTTTTCAGGCATTTAATGTTTTGCGGTACGAAATAGGCCAGAGTTATTATTCACATTATGATGCGTTTGATCCTTCTCAATATGGTCCTCAGAAGAGCCAAAGGGTATGCACTATCTACTTGGGTAAATTGTTGCTGTTAACTTTTCCAATTGACTTCTTAAATTTTTTACTAGCTCAATTCTTGCACAAACTAGCATAATGAATGGTGCATGGATTTGAGTGTTTGGTTATTGGGATAAGATGGTGTTGTTTTTCATATGCATGTTTCTTCCAATCCTCCTCCATCAAAAATATTTTTAGAATGGGGAAAATAAAGTTTGTTTGAAGCTATGGTTCATAAGACACTAGTTTGCAGATCCATTTCAATGACTTAATTTATACATGGAATCACCAATGGTGTGTTATCTGGATCACCACAAGGTGTATACAGCATTTCTTCCATTTAGAACTTTGTGGAACCCACATTAGTTTTATCCTTAATAAGCATATAGTTTTATCCGTTATATACATCTCTTTTTCTTTTATTTTCGCCCCTTTTGATGAAAAAGTTCTGTTTTTTGTCATCGATCCTTACATAACCATCATTTGTGGAGTGTTTAGAGCAAGTGTGCCATAGACTATAACTATGAAATTTGACATTTCATAATAGCTCAAATTGCAGTTAATTTTGAGTAATGATTATTTTCAGGGCCAGTCTAAAAATAATGTATTTTCATTTAGGTTGCATCCTTTTTGTTATATTTATCTG-ATGTGGAAGAAGGTG--GAGAAACCATGTTCCCTTTCGAGGTGAGTTCAAAGTTGTTTCTTCTTTCGTGGACTATTATTATATTTCTGCCTCTCATGTCGTGTAAATAAGTCCTTTGGTTAATTTACAGAATGCACAGAATATGGATGTTAATTATGACTTCCGCAAGTGTATTGGTCTGAAAGTGAAGCCGCGTAGAGGGGATGGACTACTATTTTACTCGCTGTTTCCAAATGGTACAATTGATCCGGTGAGTATTTGCTTGTAGATTTTAGTGTGATCGCCGTATTTCTTTGCATACAAAAGAAGTCTGATCCTTGGGGGGTAGGCCATCATCTACCGGAGCCATGTGCCTAGTCTCGAGGATCTCTGTTATTTTAACAAGGGTTGGTCATAACAGCTATGCAGCAAGCCAAGCATATTGTGAACCATTTATGACCTTATACTTTATAGCAGATGAATAGTATAAAGTGGATTTATATGATGCTGTTATGAAAATTTGTTACAAATGAGATTATCAGCAATAGGTTTGTTGGAACAGAAGACAAACTTTCTGTGCTCTTTTGCAGCGCGGTATACCATCATGCGCAGAGCTGTGATTCTTTTAGGATTTTAAAGCATTAGGAGTTGCCCACAGAATTAAAGATGATAAAGTTAAAGAAATGCCTACATCTTTCCAATGTCTTATTTGCTTTTGGTTTTGTTCTTTTTGTTTGTTTTGCTGTGTGTTTTCTTATTTCCTTTCTGCGGGAACCGTTCTTGATCAATCTGTCTACCATGATGCTATGGAGATGTTTGCTGAAGAGTCGCTATGGTGCTGCTAAAATCATTTTTGCTGATTGTGATTTATCAGTGTGAATGGTAGCGCATATTAGGTACCACCCCATCGAACAGATACTGATGGGAAAGGTTATAATATTGGTTCCCGTATGGCCTGTTTCACTGTTTCATTTTCTGTTGCTGATTCATCTCCTCTGGCTACTACTGGTTATAAAGCTGAATACTGATTACCAACATTATATCAGACTGCTCATGTTGGCTTGCAGTTACTCACATTTGTAAATCTCTTATGTAGACATCTCTTCACGGGAGCTGTGCAGTAATCCGAGGTGAAAAATGGGTTGCCACAAAGTGGATCAGGGATCAAGAAATGGATGAATAAACGAGTACATGTCTGGAAGTGGTGTTAATATAATTCTTTCGTAATTTAATGTAGCCACTCACTGGAACCTTTGAGCGAATTTTACAGTAAATATATCTAGTGTTTGTTCATATTGAT</genome_strand>
        <mrna_strand>CCTGTGCGTTTTTCAGGCATTTAATGTTTTGCGGTACGAAACCGGCCAGAGTTATCATTCGCATTATGATGCGTTTGATCCTTCTCAATATGGTCCTCAGAAGAGCCAAAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCATCCTTTTTGTTGTATTTATCTGAATGTGGAAGAAGGTGNTGAGAAACCATGTTCCCTTTCGAG.........................................................................................AGTGCACAGAATATGGATGCTAATTATGACTTCCGCAAGTGTATTGGTCTGAAAGTGAAGCCGCGTAGAGGGGATGGACTACTATTTTACTCGCTGTTTCCAAATGGTACAATTGACCCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATCAATTCACGGGAGCTGTGCAGTAATCCGAGGTGAAAAATGGGTTGCCACAAAGTGGATCAGGGATCAAGAAATGGATGAATAAACGAGTACATGTCTCGAAGTGGTGTTGATATAATTCTTTTGTAATTTAATGTAGTGACTCACTAGGATTTTGAAACGAGTTTTGCAGTAAATATATCTAGTGTTCGTTCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E232181" ref_strand="+" ref_description="SGN-E232181 [cLEL-5-L2](-)">
      <seq>tcctttttgttatatttatctgatgtgaaagaaggtggagaaaccatgttccctttcgagaatgcacagaatatggatgttaattatgacttccgcaagtgtattggtctgaaagtgaagccgcgtagaggggatggactactattttactcgctgtttccaaatggtacaattgatccgacatctcttcacgggagctgtgcagtaatccgaggtgaaaaatgggttgccacaaagtggatcagggatcaagaaatggatgaataaacgagtacatgtctggaagtggtgttaatataattctttcgtaatttaatgtagccactcactggaacctttgagcgaattttacagtaaatatatctagtgtttgttcataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="130253" stop="132145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130553" g_stop="130612" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130613" i_stop="130701" i_length="89">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130702" g_stop="130821" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="180" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="130822" i_stop="131646" i_length="825">
            <donor d_prob="0.879" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131647" g_stop="131844" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="378" r_length="198" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="379" polyA_stop="394"/>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E232181" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232181" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130553" e_stop="130612"/>
          <exon e_start="130702" e_stop="130821"/>
          <exon e_start="131647" e_stop="131844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTTTTGTTATATTTATCTGATGTGGAAGAAGGTGGAGAAACCATGTTCCCTTTCGAGGTGAGTTCAAAGTTGTTTCTTCTTTCGTGGACTATTATTATATTTCTGCCTCTCATGTCGTGTAAATAAGTCCTTTGGTTAATTTACAGAATGCACAGAATATGGATGTTAATTATGACTTCCGCAAGTGTATTGGTCTGAAAGTGAAGCCGCGTAGAGGGGATGGACTACTATTTTACTCGCTGTTTCCAAATGGTACAATTGATCCGGTGAGTATTTGCTTGTAGATTTTAGTGTGATCGCCGTATTTCTTTGCATACAAAAGAAGTCTGATCCTTGGGGGGTAGGCCATCATCTACCGGAGCCATGTGCCTAGTCTCGAGGATCTCTGTTATTTTAACAAGGGTTGGTCATAACAGCTATGCAGCAAGCCAAGCATATTGTGAACCATTTATGACCTTATACTTTATAGCAGATGAATAGTATAAAGTGGATTTATATGATGCTGTTATGAAAATTTGTTACAAATGAGATTATCAGCAATAGGTTTGTTGGAACAGAAGACAAACTTTCTGTGCTCTTTTGCAGCGCGGTATACCATCATGCGCAGAGCTGTGATTCTTTTAGGATTTTAAAGCATTAGGAGTTGCCCACAGAATTAAAGATGATAAAGTTAAAGAAATGCCTACATCTTTCCAATGTCTTATTTGCTTTTGGTTTTGTTCTTTTTGTTTGTTTTGCTGTGTGTTTTCTTATTTCCTTTCTGCGGGAACCGTTCTTGATCAATCTGTCTACCATGATGCTATGGAGATGTTTGCTGAAGAGTCGCTATGGTGCTGCTAAAATCATTTTTGCTGATTGTGATTTATCAGTGTGAATGGTAGCGCATATTAGGTACCACCCCATCGAACAGATACTGATGGGAAAGGTTATAATATTGGTTCCCGTATGGCCTGTTTCACTGTTTCATTTTCTGTTGCTGATTCATCTCCTCTGGCTACTACTGGTTATAAAGCTGAATACTGATTACCAACATTATATCAGACTGCTCATGTTGGCTTGCAGTTACTCACATTTGTAAATCTCTTATGTAGACATCTCTTCACGGGAGCTGTGCAGTAATCCGAGGTGAAAAATGGGTTGCCACAAAGTGGATCAGGGATCAAGAAATGGATGAATAAACGAGTACATGTCTGGAAGTGGTGTTAATATAATTCTTTCGTAATTTAATGTAGCCACTCACTGGAACCTTTGAGCGAATTTTACAGTAAATATATCTAGTGTTTGTTCAT</genome_strand>
        <mrna_strand>TCCTTTTTGTTATATTTATCTGATGTGAAAGAAGGTGGAGAAACCATGTTCCCTTTCGAG.........................................................................................AATGCACAGAATATGGATGTTAATTATGACTTCCGCAAGTGTATTGGTCTGAAAGTGAAGCCGCGTAGAGGGGATGGACTACTATTTTACTCGCTGTTTCCAAATGGTACAATTGATCCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATCTCTTCACGGGAGCTGTGCAGTAATCCGAGGTGAAAAATGGGTTGCCACAAAGTGGATCAGGGATCAAGAAATGGATGAATAAACGAGTACATGTCTGGAAGTGGTGTTAATATAATTCTTTCGTAATTTAATGTAGCCACTCACTGGAACCTTTGAGCGAATTTTACAGTAAATATATCTAGTGTTTGTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E232681" ref_strand="+" ref_description="SGN-E232681 [cLEL-5-L2](-)">
      <seq>gatgttaattatgacttcccgcaagtgtattggtctgaaagtgaagccgcgtagaggggatggactactattttactcgctgtttccaaatggtacaattgatccgacatctcttcacgggagctgtgcagtaatccgaggtgaaaaatgggttgccacaaagtggatcagggatcaagaaatggatgaataaacgagtacatgtctggaagtggtgttaatataattctttcgtaatttaatgtagccactcactggaacctttgagcgaattttacagtaaatatatctagtgtttgttcataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="130417" stop="132145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130717" g_stop="130821" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130822" i_stop="131646" i_length="825">
            <donor d_prob="0.879" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131647" g_stop="131844" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="304" r_length="198" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="305" polyA_stop="320"/>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E232681" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>303</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232681" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130717" e_stop="130821"/>
          <exon e_start="131647" e_stop="131844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGTTAATTATGACTT-CCGCAAGTGTATTGGTCTGAAAGTGAAGCCGCGTAGAGGGGATGGACTACTATTTTACTCGCTGTTTCCAAATGGTACAATTGATCCGGTGAGTATTTGCTTGTAGATTTTAGTGTGATCGCCGTATTTCTTTGCATACAAAAGAAGTCTGATCCTTGGGGGGTAGGCCATCATCTACCGGAGCCATGTGCCTAGTCTCGAGGATCTCTGTTATTTTAACAAGGGTTGGTCATAACAGCTATGCAGCAAGCCAAGCATATTGTGAACCATTTATGACCTTATACTTTATAGCAGATGAATAGTATAAAGTGGATTTATATGATGCTGTTATGAAAATTTGTTACAAATGAGATTATCAGCAATAGGTTTGTTGGAACAGAAGACAAACTTTCTGTGCTCTTTTGCAGCGCGGTATACCATCATGCGCAGAGCTGTGATTCTTTTAGGATTTTAAAGCATTAGGAGTTGCCCACAGAATTAAAGATGATAAAGTTAAAGAAATGCCTACATCTTTCCAATGTCTTATTTGCTTTTGGTTTTGTTCTTTTTGTTTGTTTTGCTGTGTGTTTTCTTATTTCCTTTCTGCGGGAACCGTTCTTGATCAATCTGTCTACCATGATGCTATGGAGATGTTTGCTGAAGAGTCGCTATGGTGCTGCTAAAATCATTTTTGCTGATTGTGATTTATCAGTGTGAATGGTAGCGCATATTAGGTACCACCCCATCGAACAGATACTGATGGGAAAGGTTATAATATTGGTTCCCGTATGGCCTGTTTCACTGTTTCATTTTCTGTTGCTGATTCATCTCCTCTGGCTACTACTGGTTATAAAGCTGAATACTGATTACCAACATTATATCAGACTGCTCATGTTGGCTTGCAGTTACTCACATTTGTAAATCTCTTATGTAGACATCTCTTCACGGGAGCTGTGCAGTAATCCGAGGTGAAAAATGGGTTGCCACAAAGTGGATCAGGGATCAAGAAATGGATGAATAAACGAGTACATGTCTGGAAGTGGTGTTAATATAATTCTTTCGTAATTTAATGTAGCCACTCACTGGAACCTTTGAGCGAATTTTACAGTAAATATATCTAGTGTTTGTTCAT</genome_strand>
        <mrna_strand>GATGTTAATTATGACTTCCCGCAAGTGTATTGGTCTGAAAGTGAAGCCGCGTAGAGGGGATGGACTACTATTTTACTCGCTGTTTCCAAATGGTACAATTGATCCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATCTCTTCACGGGAGCTGTGCAGTAATCCGAGGTGAAAAATGGGTTGCCACAAAGTGGATCAGGGATCAAGAAATGGATGAATAAACGAGTACATGTCTGGAAGTGGTGTTAATATAATTCTTTCGTAATTTAATGTAGCCACTCACTGGAACCTTTGAGCGAATTTTACAGTAAATATATCTAGTGTTTGTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E234776" ref_strand="+" ref_description="SGN-E234776 [cLEL-6-A2](-)">
      <seq>aatggtacaattgatcggacatctcttcaggggagctgtgcagtaatccgaggttaaaaatgggttgccacaaagtggatcagggatcaacaaatggatggataaacgagtacatgtctggaagtggtgttaatataattcattcgtaatttaatgtagccacccactggaacctttgagcgaattttacagtaaatatatctagtgtttgttccaaaaacaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="130504" stop="132145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130804" g_stop="130821" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130822" i_stop="131646" i_length="825">
            <donor d_prob="0.879" d_score="0.00"/>
            <acceptor a_prob="0.890" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131647" g_stop="131842" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="214" r_length="196" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="216" polyA_stop="237"/>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E234776" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>214</cumulative_length_of_scored_exons>
        <coverage percentage="0.903" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E234776" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130804" e_stop="130821"/>
          <exon e_start="131647" e_stop="131842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGTACAATTGATCCGGTGAGTATTTGCTTGTAGATTTTAGTGTGATCGCCGTATTTCTTTGCATACAAAAGAAGTCTGATCCTTGGGGGGTAGGCCATCATCTACCGGAGCCATGTGCCTAGTCTCGAGGATCTCTGTTATTTTAACAAGGGTTGGTCATAACAGCTATGCAGCAAGCCAAGCATATTGTGAACCATTTATGACCTTATACTTTATAGCAGATGAATAGTATAAAGTGGATTTATATGATGCTGTTATGAAAATTTGTTACAAATGAGATTATCAGCAATAGGTTTGTTGGAACAGAAGACAAACTTTCTGTGCTCTTTTGCAGCGCGGTATACCATCATGCGCAGAGCTGTGATTCTTTTAGGATTTTAAAGCATTAGGAGTTGCCCACAGAATTAAAGATGATAAAGTTAAAGAAATGCCTACATCTTTCCAATGTCTTATTTGCTTTTGGTTTTGTTCTTTTTGTTTGTTTTGCTGTGTGTTTTCTTATTTCCTTTCTGCGGGAACCGTTCTTGATCAATCTGTCTACCATGATGCTATGGAGATGTTTGCTGAAGAGTCGCTATGGTGCTGCTAAAATCATTTTTGCTGATTGTGATTTATCAGTGTGAATGGTAGCGCATATTAGGTACCACCCCATCGAACAGATACTGATGGGAAAGGTTATAATATTGGTTCCCGTATGGCCTGTTTCACTGTTTCATTTTCTGTTGCTGATTCATCTCCTCTGGCTACTACTGGTTATAAAGCTGAATACTGATTACCAACATTATATCAGACTGCTCATGTTGGCTTGCAGTTACTCACATTTGTAAATCTCTTATGTAGACATCTCTTCACGGGAGCTGTGCAGTAATCCGAGGTGAAAAATGGGTTGCCACAAAGTGGATCAGGGATCAAGAAATGGATGAATAAACGAGTACATGTCTGGAAGTGGTGTTAATATAATTCTTTCGTAATTTAATGTAGCCACTCACTGGAACCTTTGAGCGAATTTTACAGTAAATATATCTAGTGTTTGTTC</genome_strand>
        <mrna_strand>AATGGTACAATTGATCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATCTCTTCAGGGGAGCTGTGCAGTAATCCGAGGTTAAAAATGGGTTGCCACAAAGTGGATCAGGGATCAACAAATGGATGGATAAACGAGTACATGTCTGGAAGTGGTGTTAATATAATTCATTCGTAATTTAATGTAGCCACCCACTGGAACCTTTGAGCGAATTTTACAGTAAATATATCTAGTGTTTGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E349058" ref_strand="+" ref_description="SGN-E349058 [cTOS-2-A18]">
      <seq>tacaattgatccgacatctcttcacgggagctgtgcagtaatccgaggtgaaaaatgggttgccacaaagtggatcagggatcaagaaatggatgaataaacgagtacatgtctggaagtggtgttaatataattctttcgtaatttaatgtagccactcactggaacctttgagcgaattttacagtaaatatatctagtgtttgttcatattgatctgtgtcagttaacccttaatacgttacttgagtcttggttgctcccattacccacaaagctcaccccatcttgcagtaaaaaagaagtctaattgtaatgaccgtgcgaatgttttgtaataggatcagatcacgtgtttcaaaagtgttgtactaacacaaatattattatgacgctaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="131346" stop="132337"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131647" g_stop="132047" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="414" r_length="401" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E349058" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131647" e_stop="132047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATCTCTTCACGGGAGCTGTGCAGTAATCCGAGGTGAAAAATGGGTTGCCACAAAGTGGATCAGGGATCAAGAAATGGATGAATAAACGAGTACATGTCTGGAAGTGGTGTTAATATAATTCTTTCGTAATTTAATGTAGCCACTCACTGGAACCTTTGAGCGAATTTTACAGTAAATATATCTAGTGTTTGTTCATATTGATCTGTGTCAGTTAACCCTTAATACGTTACTTGAGTCTTGGTTGCTCCCATTACCCACAAAGCTCACCCCATCTTGCAGTAAAAAAGAAGTCTAATTGTAATGACCGTGCGAATGTTTTGTAATAGGATCAGATCACGTGTTTCAAAAGTGTTGTACTAACACAAATATTATTATGACGCTAAAAAGAATGTGTATAGA</genome_strand>
        <mrna_strand>ACATCTCTTCACGGGAGCTGTGCAGTAATCCGAGGTGAAAAATGGGTTGCCACAAAGTGGATCAGGGATCAAGAAATGGATGAATAAACGAGTACATGTCTGGAAGTGGTGTTAATATAATTCTTTCGTAATTTAATGTAGCCACTCACTGGAACCTTTGAGCGAATTTTACAGTAAATATATCTAGTGTTTGTTCATATTGATCTGTGTCAGTTAACCCTTAATACGTTACTTGAGTCTTGGTTGCTCCCATTACCCACAAAGCTCACCCCATCTTGCAGTAAAAAAGAAGTCTAATTGTAATGACCGTGCGAATGTTTTGTAATAGGATCAGATCACGTGTTTCAAAAGTGTTGTACTAACACAAATATTATTATGACGCTAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E714981" ref_strand="+" ref_description="SGN-E714981 [FB13AA03]">
      <seq>gaggattaatataacagagaggagaaagaaaagaaatggaaaagcaaagagatagtaataagggatgtatagatgagagaaaactagaaggattgccagtggatacaagtccatatacacagtataaggatttggaggattacaagcaacagggttatggaacacaaggccatcaacagcccaatcctgggcgtggtgctgccagttccaccgacgccccaaccctcgcaggtggtggatctgctgaagctcagctttctgctactgacaacatcaatcgccagggtgttccttaattaatttcgttaatttttagtcgcatttacaacagttattccttttttttacttgggtaaaatacgtatatgtagaataataacaataagaacgttctgaattagtgattctagatcttagattcgtccctgtttggtgttgtttgtatgttccttccgtcggcttgtaacttaataaatatatttttctaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="132064" stop="133153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132360" g_stop="132859" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="500" r_length="500" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E714981" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714981" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132360" e_stop="132859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATATTAATATAACAGAGAGGAGAAAGAAAAGAAATGGAAAAGCAAAGAGATAGTAATAAGGGATGTATAGATGAGAGAAAACTAGAAGGATTGCCAGTGGATACAAGTCCATATACACAGTATAAGGATTTGGAGGATTACAAGCAACAGGGTTATGGAACACAAGGCCATCAACAGCCCAATCCTGGGCGTGGTGCTGCCAGTTCCACCGACGCCCCAACCCTCGCAGGTGGTGGATCTGCTGAAGCTCAGCTTTCTGCTACTGACAACATCAATCGCCAGGGTGTTCCTTAATTAATTTCGTTAATTTTTAGTCGCATTTACAACAGTTATTCCTTTTTTTTACTTGGGTAAAATACGTATATGTAGAATAATAACAATAAGAACGTTCTGAATTAGTGATTCTAGATCTTAGATTCGTCCCTGTTTGGTGTTGTTTGTATGTTCCTTCCGTCGGCTTGTAACTTAATAAATATATTTTTCTAAAAATAAGTACTA</genome_strand>
        <mrna_strand>GAGGATTAATATAACAGAGAGGAGAAAGAAAAGAAATGGAAAAGCAAAGAGATAGTAATAAGGGATGTATAGATGAGAGAAAACTAGAAGGATTGCCAGTGGATACAAGTCCATATACACAGTATAAGGATTTGGAGGATTACAAGCAACAGGGTTATGGAACACAAGGCCATCAACAGCCCAATCCTGGGCGTGGTGCTGCCAGTTCCACCGACGCCCCAACCCTCGCAGGTGGTGGATCTGCTGAAGCTCAGCTTTCTGCTACTGACAACATCAATCGCCAGGGTGTTCCTTAATTAATTTCGTTAATTTTTAGTCGCATTTACAACAGTTATTCCTTTTTTTTACTTGGGTAAAATACGTATATGTAGAATAATAACAATAAGAACGTTCTGAATTAGTGATTCTAGATCTTAGATTCGTCCCTGTTTGGTGTTGTTTGTATGTTCCTTCCGTCGGCTTGTAACTTAATAAATATATTTTTCTAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E280790" ref_strand="+" ref_description="SGN-E280790 [cLEL-6-D11](-)">
      <seq>aggaataactgttgtaaatgcgactaaaaattaacgaaattaattaaggaacaccctggcgattgatgttgtcagtagcagaaagctgagcttcagcagatccaccacctgcgagggttggggcgtcggtggaactggcagcaccacgcccaggattgggctgttgatggccttgtgttccataaccctgttgcttgtaatcctccaaatccttatactgtgtatatggacttgtatccactggggatccttctagttttctctcatctacacatcccttattactatctctttgaatttccatttcttttctttctcctcgtgccgaattcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="132998" stop="132074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132698" g_stop="132363" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="335" r_length="335" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E280790" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>336</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280790" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132698" e_stop="132363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAATAACTGTTGTAAATGCGACTAAAAATTAACGAAATTAATTAAGGAACACCCTGGCGATTGATGTTGTCAGTAGCAGAAAGCTGAGCTTCAGCAGATCCACCACCTGCGAGGGTTGGGGCGTCGGTGGAACTGGCAGCACCACGCCCAGGATTGGGCTGTTGATGGCCTTGTGTTCCATAACCCTGTTGCTTGTAATCCTCCAAATCCTTATACTGTGTATATGGACTTGTATCCACTGGCAATCCTTCTAGTTTTCTCTCATCTATACATCCCTTATTACTATCTCTTTGCTTTTCCATTTCTTTTCTTTCTCCTCTCTGTTATATTAATA</genome_strand>
        <mrna_strand>AGGAATAACTGTTGTAAATGCGACTAAAAATTAACGAAATTAATTAAGGAACACCCTGGCGATTGATGTTGTCAGTAGCAGAAAGCTGAGCTTCAGCAGATCCACCACCTGCGAGGGTTGGGGCGTCGGTGGAACTGGCAGCACCACGCCCAGGATTGGGCTGTTGATGGCCTTGTGTTCCATAACCCTGTTGCTTGTAATCCTCCAAATCCTTATACTGTGTATATGGACTTGTATCCACTGGGGATCCTTCTAGTTTTCTCTCATCTACACATCCCTTATTACTATCTCTTTGAATTTCCATTTCTTTTCTTTCTCCTC-GTGCCGAATTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E280866" ref_strand="+" ref_description="SGN-E280866 [cLEL-6-C11](-)">
      <seq>aaaaaaggaataactgttgtaaatgcgactaaaaattaccgaaattaattaaggaacaccctggcgattgatgttgtcagtagcagaaagctgagcttcagcagatccaccacctgcgagggttggggcgtcggtggaactggcagcaccacgcccaggattgggctgttgatggccttgtgttccataaccctgttgcttgtaatcctccaaatccttatactgtgtatatggacttgtatccactggcaagccttctagttttctctcatctatacatcccttattactatctctttgcttatccatttcttttctttctcctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="133003" stop="132078"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132703" g_stop="132378" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E280866" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280866" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132703" e_stop="132378"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAGGAATAACTGTTGTAAATGCGACTAAAAATTAACGAAATTAATTAAGGAACACCCTGGCGATTGATGTTGTCAGTAGCAGAAAGCTGAGCTTCAGCAGATCCACCACCTGCGAGGGTTGGGGCGTCGGTGGAACTGGCAGCACCACGCCCAGGATTGGGCTGTTGATGGCCTTGTGTTCCATAACCCTGTTGCTTGTAATCCTCCAAATCCTTATACTGTGTATATGGACTTGTATCCACTGGCAATCCTTCTAGTTTTCTCTCATCTATACATCCCTTATTACTATCTCTTTGCTTTTCCATTTCTTTTCTTTCTCCTC</genome_strand>
        <mrna_strand>AAAAAAGGAATAACTGTTGTAAATGCGACTAAAAATTACCGAAATTAATTAAGGAACACCCTGGCGATTGATGTTGTCAGTAGCAGAAAGCTGAGCTTCAGCAGATCCACCACCTGCGAGGGTTGGGGCGTCGGTGGAACTGGCAGCACCACGCCCAGGATTGGGCTGTTGATGGCCTTGTGTTCCATAACCCTGTTGCTTGTAATCCTCCAAATCCTTATACTGTGTATATGGACTTGTATCCACTGGCAAGCCTTCTAGTTTTCTCTCATCTATACATCCCTTATTACTATCTCTTTGCTTATCCATTTCTTTTCTTTCTCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E371082" ref_strand="+" ref_description="SGN-E371082 [TUS-29-L17]">
      <seq>tttataatataatctatataaattaataccattcaaatgcatgcattgttaaattaaagtagtccccaccatcttcactcttcccaagtagtaacagagaagcccaactttatttttctccgtaataatcatttgaaaggcttaaaaaagctccacgctgctaaaaaaaaagccggctttatttgcgccccaatagtattcttgacttacaaacaaggaacgaacaattttctattgtcgcctgcaagcttattcctacatcccatttgtctccctctttatataactgttcctcttttttaactatattattctatatcgacctcgatcaacaagaacaagagcaagaaaaaatgatgaaaattactagggaaagcgaagaaattgttctcctcgaagaacaatacgatgaattagaagacgaatatgatgaagaagcattatcactgtgtgatcttccgaacaatgaagaggacgaaaagaaggaagaagtttctagaagtactagcgtagaaggcggacaattagaagattttgattttagctcttctggtggtaatttgttgaaagaatcagagatgtgtacggcagatgaaattttctacaaaggccaaatattaccgttgcgtcattcaattagtttgccaagtgatcggcgcaattgtcatgatacaaattcaagcagtagaagtagcagtattcgaagccaacgttcatctagcagtggcagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="135561" stop="136892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135861" g_stop="136592" g_length="732"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="732" r_length="732" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E371082" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371082" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135861" e_stop="136592"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATAATATAATCTATATAAATTAATACCATTCAAATGCATGCATTGTTAAATTAAAGTAGTCCCCACCATCTTCACTCTTCCCAAGTAGTAACAGAGAAGCCCAACTTTATTTTTCTCCGTAATAATCATTTGAAAGGCTTAAAAAAGCTCCACGCTGCTAAAAAAAAAGCCGGCTTTATTTGCGCCCCAATAGTATTCTTGACTTACAAACAAGGAACGAACAATTTTCTATTGTCGCCTGCAAGCTTATTCCTACATCCCATTTGTCTCCCTCTTTATATAACTGTTCCTCTTTTTTAACTATATTATTCTATATCGACCTCGATCAACAAGAACAAGAGCAAGAAAAAATGATGAAAATTACTAGGGAAAGCGAAGAAATTGTTCTCCTCGAAGAACAATACGATGAATTAGAAGACGAATATGATGAAGAAGCATTATCACTGTGTGATCTTCCGAACAATGAAGAGGACGAAAAGAAGGAAGAAGTTTCTAGAAGTACTAGCGTAGAAGGCGGACAATTAGAAGATTTTGATTTTAGCTCTTCTGGTGGTAATTTGTTGAAAGAATCAGAGATGTGTACGGCAGATGAAATTTTCTACAAAGGCCAAATATTACCGTTGCGTCATTCAATTAGTTTGCCAAGTGATCGGCGCAATTGTCATGATACAAATTCAAGCAGTAGAAGTAGCAGTATTCGAAGCCAACGTTCATCTAGCAGTGGCAGTT</genome_strand>
        <mrna_strand>TTTATAATATAATCTATATAAATTAATACCATTCAAATGCATGCATTGTTAAATTAAAGTAGTCCCCACCATCTTCACTCTTCCCAAGTAGTAACAGAGAAGCCCAACTTTATTTTTCTCCGTAATAATCATTTGAAAGGCTTAAAAAAGCTCCACGCTGCTAAAAAAAAAGCCGGCTTTATTTGCGCCCCAATAGTATTCTTGACTTACAAACAAGGAACGAACAATTTTCTATTGTCGCCTGCAAGCTTATTCCTACATCCCATTTGTCTCCCTCTTTATATAACTGTTCCTCTTTTTTAACTATATTATTCTATATCGACCTCGATCAACAAGAACAAGAGCAAGAAAAAATGATGAAAATTACTAGGGAAAGCGAAGAAATTGTTCTCCTCGAAGAACAATACGATGAATTAGAAGACGAATATGATGAAGAAGCATTATCACTGTGTGATCTTCCGAACAATGAAGAGGACGAAAAGAAGGAAGAAGTTTCTAGAAGTACTAGCGTAGAAGGCGGACAATTAGAAGATTTTGATTTTAGCTCTTCTGGTGGTAATTTGTTGAAAGAATCAGAGATGTGTACGGCAGATGAAATTTTCTACAAAGGCCAAATATTACCGTTGCGTCATTCAATTAGTTTGCCAAGTGATCGGCGCAATTGTCATGATACAAATTCAAGCAGTAGAAGTAGCAGTATTCGAAGCCAACGTTCATCTAGCAGTGGCAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E280331" ref_strand="+" ref_description="SGN-E280331 [cLER-1-O1]">
      <seq>tttataatataatctatataaattaataccattcaaatgcatgcattgttaaattaaagtagtccccaccatcttcactcttaccaagtagtaacagagaagcccaactttatttttctccggaataatcatttgaaaggcttaaaaaagctccacgctgctaaaaaaaaagccggctttatttgcgccccaatagtattcttgacttacaaacaaggaacgaacaattttctattgtcgcctgcaagcttattcctacatcccatttgtctccctctttatataactgttcctcttttttaactatattattctatatcgacctcgatcaacaagaacaagagncaagaaaaatgatgaaaattactagggaaagcgaagaaattgttctcctcgaagaacaatacgatgaattagaagacgaatatgatgaagaagcattatcactgtgtgatcttccgaacaatgaagaggacgaaaagaaggaagaagtttctagaagtactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="135561" stop="136668"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135861" g_stop="136368" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="508" r_length="508" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E280331" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135861" e_stop="136368"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATAATATAATCTATATAAATTAATACCATTCAAATGCATGCATTGTTAAATTAAAGTAGTCCCCACCATCTTCACTCTTCCCAAGTAGTAACAGAGAAGCCCAACTTTATTTTTCTCCGTAATAATCATTTGAAAGGCTTAAAAAAGCTCCACGCTGCTAAAAAAAAAGCCGGCTTTATTTGCGCCCCAATAGTATTCTTGACTTACAAACAAGGAACGAACAATTTTCTATTGTCGCCTGCAAGCTTATTCCTACATCCCATTTGTCTCCCTCTTTATATAACTGTTCCTCTTTTTTAACTATATTATTCTATATCGACCTCGATCAACAAGAACAAGAG-CAAGAAAAAATGATGAAAATTACTAGGGAAAGCGAAGAAATTGTTCTCCTCGAAGAACAATACGATGAATTAGAAGACGAATATGATGAAGAAGCATTATCACTGTGTGATCTTCCGAACAATGAAGAGGACGAAAAGAAGGAAGAAGTTTCTAGAAGTACTAG</genome_strand>
        <mrna_strand>TTTATAATATAATCTATATAAATTAATACCATTCAAATGCATGCATTGTTAAATTAAAGTAGTCCCCACCATCTTCACTCTTACCAAGTAGTAACAGAGAAGCCCAACTTTATTTTTCTCCGGAATAATCATTTGAAAGGCTTAAAAAAGCTCCACGCTGCTAAAAAAAAAGCCGGCTTTATTTGCGCCCCAATAGTATTCTTGACTTACAAACAAGGAACGAACAATTTTCTATTGTCGCCTGCAAGCTTATTCCTACATCCCATTTGTCTCCCTCTTTATATAACTGTTCCTCTTTTTTAACTATATTATTCTATATCGACCTCGATCAACAAGAACAAGAGNCAAG-AAAAATGATGAAAATTACTAGGGAAAGCGAAGAAATTGTTCTCCTCGAAGAACAATACGATGAATTAGAAGACGAATATGATGAAGAAGCATTATCACTGTGTGATCTTCCGAACAATGAAGAGGACGAAAAGAAGGAAGAAGTTTCTAGAAGTACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E402607" ref_strand="+" ref_description="SGN-E402607 [PPC-8-O9]">
      <seq>aaatgccggctttatttgcgccccaatagtattattgacttgcaaacaagaaacgaacaattttctattgtcgcctgcaagcttattcctttacatcccatttgtctccctctctatataactgttcctctttttaactatatttttctatctatatcgaccacaacaagaagaagaaaaaatgatgaaaattactagggaaagcgaagaaattgttctccttagagaacaagaagaggaattagaagaagacgaagaagcattatcactgtgtgatcttccgaacaatgaagagaacgaaacgaaggaagaagcttctagaagtactagtgaagaagccgccggccaattggaagattttgattttagctcttccggtggtaatttgttgaaagagtcagagatgtgtacggcagatgaaattttctataaaggccaaatattaccgttgcgtcattcaattagtttgccaagtgatcggcgcaattgtcatgacacaaattcaagcagtagaagtagcagtattcgaagccaacgttcatctagcagtggcagttcatctaatttcaacacaaaataccagcctaagattcgaaatcaatttcattcccatcctagtccaacacctcaagttcgattttctaaagttaattctcaatcaaatgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="135729" stop="137002"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136028" g_stop="136702" g_length="675"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="667" r_length="667" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E402607" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E402607" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136028" e_stop="136702"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGCCGGCTTTATTTGCGCCCCAATAGTATTCTTGACTTACAAACAAGGAACGAACAATTTTCTATTGTCGCCTGCAAGCTTATTCC--TACATCCCATTTGTCTCCCTCTTTATATAACTGTTCCTCTTTTTTAACTATATTATTCTATATCGACCTCGATCAACAAGAACAAGAGCAAGAAAAAATGATGAAAATTACTAGGGAAAGCGAAGAAATTGTTCTCCTCGAAGAACAATACGATGAATTAGAAGACGAATATGATGAAGAAGCATTATCACTGTGTGATCTTCCGAACAATGAAGAGGACGAAAAGAAGGAAGAAGTTTCTAGAAGTACTAGCGTAGAAG--G-CGGACAATTAGAAGATTTTGATTTTAGCTCTTCTGGTGGTAATTTGTTGAAAGAATCAGAGATGTGTACGGCAGATGAAATTTTCTACAAAGGCCAAATATTACCGTTGCGTCATTCAATTAGTTTGCCAAGTGATCGGCGCAATTGTCATGATACAAATTCAAGCAGTAGAAGTAGCAGTATTCGAAGCCAACGTTCATCTAGCAGTGGCAGTTCATCTAATTTCAACACGAAATATCAGCCTAAAATTCGAAATCAATTTCATTCTCATCCTAGTCCAACACCTCAGGTTCGATTTTCTAAAGTTAGTTTTCAATCAAATGTC</genome_strand>
        <mrna_strand>AAATGCCGGCTTTATTTGCGCCCCAATAGTATTATTGACTTGCAAACAAGAAACGAACAATTTTCTATTGTCGCCTGCAAGCTTATTCCTTTACATCCCATTTGTCTCCCTCTCTATATAACTGTTCCTC-TTTTTAACTATATT-TT-TCTATCTA--T--ATCGACCACAACAAGAAGAAGAAAAAATGATGAAAATTACTAGGGAAAGCGAAGAAATTGTTCTCCTTAGAGAACAAGAAGAGGAATTAG-A-A-G-A-A-GACGAAGAAGCATTATCACTGTGTGATCTTCCGAACAATGAAGAGAACGAAACGAAGGAAGAAGCTTCTAGAAGTACTAGTGAAGAAGCCGCCGGCCAATTGGAAGATTTTGATTTTAGCTCTTCCGGTGGTAATTTGTTGAAAGAGTCAGAGATGTGTACGGCAGATGAAATTTTCTATAAAGGCCAAATATTACCGTTGCGTCATTCAATTAGTTTGCCAAGTGATCGGCGCAATTGTCATGACACAAATTCAAGCAGTAGAAGTAGCAGTATTCGAAGCCAACGTTCATCTAGCAGTGGCAGTTCATCTAATTTCAACACAAAATACCAGCCTAAGATTCGAAATCAATTTCATTCCCATCCTAGTCCAACACCTCAAGTTCGATTTTCTAAAGTTAATTCTCAATCAAATGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E324153" ref_strand="+" ref_description="SGN-E324153 [cTOC-4-C10]">
      <seq>aatagtattcttgacttacaaacaaggaacgaacaattttgtattgtcgcctgcaagcttattcctacatcccatttgtctccctctttatataactgttcctcttttttaactatattattctatatcgacctcgatcaacaagaacaagagcaagaaaaaatgatgaaaattactagggaaagcgaagaaattgttctcctcgaagaacaatacgatgaattagaagacgaatatgatgaagaagcattatcactgtgtgatcttccgaacaatgaagaggacgaaaagaaggaagaagtttctagaagtactagcgtagaaagcggacaattagaagattttgattttagctcttctggtggtaatttgttgaaagaatcagagatgtgtacggcagatgaaattttctacaaaggccaaatattacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="135752" stop="136782"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136052" g_stop="136482" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="431" r_length="431" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E324153" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324153" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136052" e_stop="136482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAGTATTCTTGACTTACAAACAAGGAACGAACAATTTTCTATTGTCGCCTGCAAGCTTATTCCTACATCCCATTTGTCTCCCTCTTTATATAACTGTTCCTCTTTTTTAACTATATTATTCTATATCGACCTCGATCAACAAGAACAAGAGCAAGAAAAAATGATGAAAATTACTAGGGAAAGCGAAGAAATTGTTCTCCTCGAAGAACAATACGATGAATTAGAAGACGAATATGATGAAGAAGCATTATCACTGTGTGATCTTCCGAACAATGAAGAGGACGAAAAGAAGGAAGAAGTTTCTAGAAGTACTAGCGTAGAAGGCGGACAATTAGAAGATTTTGATTTTAGCTCTTCTGGTGGTAATTTGTTGAAAGAATCAGAGATGTGTACGGCAGATGAAATTTTCTACAAAGGCCAAATATTACC</genome_strand>
        <mrna_strand>AATAGTATTCTTGACTTACAAACAAGGAACGAACAATTTTGTATTGTCGCCTGCAAGCTTATTCCTACATCCCATTTGTCTCCCTCTTTATATAACTGTTCCTCTTTTTTAACTATATTATTCTATATCGACCTCGATCAACAAGAACAAGAGCAAGAAAAAATGATGAAAATTACTAGGGAAAGCGAAGAAATTGTTCTCCTCGAAGAACAATACGATGAATTAGAAGACGAATATGATGAAGAAGCATTATCACTGTGTGATCTTCCGAACAATGAAGAGGACGAAAAGAAGGAAGAAGTTTCTAGAAGTACTAGCGTAGAAAGCGGACAATTAGAAGATTTTGATTTTAGCTCTTCTGGTGGTAATTTGTTGAAAGAATCAGAGATGTGTACGGCAGATGAAATTTTCTACAAAGGCCAAATATTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E333395" ref_strand="+" ref_description="SGN-E333395 [cTOD-20-D5]">
      <seq>cttgacttacaaacaaggaacgaacaattttctattgtcgcctgcaagcttattcctacatcccatttgtctccctctttatataactgttcctcttttttaactatattattctatatcgacctcgatcaacaagaacaagagcaagaaaaaatgatgaaaattactagggaaagcgaagaaattgttctcctcgaagaacaatacgatgaattagaagacgaatatgatgaagaagcattatcactgtgtgatcttccgaacaatgaagaggacgaaaagaaggaagaagtttctagaagtactagcgtagaaggcggacaattagaagattttgattttagctcttctggtggtaatttgttgaaagaatcagagatgtgtacggcagatgaaattttctacaaaggccaaatattaccgttgcgtcattcaattagtttgccaagtgatcggcgcaattgtcatgatacaaattcaagcagtagaagtagcagtattcgaagccaacgttcatctagcagtggcagttcatctaatttcaacacgaaatatcagcctaaaattcgaaatcaatttcattctcatcctagtccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="135761" stop="136958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136061" g_stop="136658" g_length="598"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="598" r_length="598" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E333395" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333395" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136061" e_stop="136658"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGACTTACAAACAAGGAACGAACAATTTTCTATTGTCGCCTGCAAGCTTATTCCTACATCCCATTTGTCTCCCTCTTTATATAACTGTTCCTCTTTTTTAACTATATTATTCTATATCGACCTCGATCAACAAGAACAAGAGCAAGAAAAAATGATGAAAATTACTAGGGAAAGCGAAGAAATTGTTCTCCTCGAAGAACAATACGATGAATTAGAAGACGAATATGATGAAGAAGCATTATCACTGTGTGATCTTCCGAACAATGAAGAGGACGAAAAGAAGGAAGAAGTTTCTAGAAGTACTAGCGTAGAAGGCGGACAATTAGAAGATTTTGATTTTAGCTCTTCTGGTGGTAATTTGTTGAAAGAATCAGAGATGTGTACGGCAGATGAAATTTTCTACAAAGGCCAAATATTACCGTTGCGTCATTCAATTAGTTTGCCAAGTGATCGGCGCAATTGTCATGATACAAATTCAAGCAGTAGAAGTAGCAGTATTCGAAGCCAACGTTCATCTAGCAGTGGCAGTTCATCTAATTTCAACACGAAATATCAGCCTAAAATTCGAAATCAATTTCATTCTCATCCTAGTCCAA</genome_strand>
        <mrna_strand>CTTGACTTACAAACAAGGAACGAACAATTTTCTATTGTCGCCTGCAAGCTTATTCCTACATCCCATTTGTCTCCCTCTTTATATAACTGTTCCTCTTTTTTAACTATATTATTCTATATCGACCTCGATCAACAAGAACAAGAGCAAGAAAAAATGATGAAAATTACTAGGGAAAGCGAAGAAATTGTTCTCCTCGAAGAACAATACGATGAATTAGAAGACGAATATGATGAAGAAGCATTATCACTGTGTGATCTTCCGAACAATGAAGAGGACGAAAAGAAGGAAGAAGTTTCTAGAAGTACTAGCGTAGAAGGCGGACAATTAGAAGATTTTGATTTTAGCTCTTCTGGTGGTAATTTGTTGAAAGAATCAGAGATGTGTACGGCAGATGAAATTTTCTACAAAGGCCAAATATTACCGTTGCGTCATTCAATTAGTTTGCCAAGTGATCGGCGCAATTGTCATGATACAAATTCAAGCAGTAGAAGTAGCAGTATTCGAAGCCAACGTTCATCTAGCAGTGGCAGTTCATCTAATTTCAACACGAAATATCAGCCTAAAATTCGAAATCAATTTCATTCTCATCCTAGTCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E333441" ref_strand="+" ref_description="SGN-E333441 [cTOD-20-E5]">
      <seq>cttgacttacaaacaaggaacgaacaattttctattgtcgcctgcaagcttattcctacatcccatttgtctccctctttatataactgttcctcttttttaactatattattctatatcgacctcgatcaacaagaacaagagcaagaaaaaatgatgaaaattactagggaaagcgaagaaattgttctcctcgaagaacaatacgatgaattagaagacgaatatgatgaagaagcattatcactgtgtgatcttccgaacaatgaagaggacgaaaagaaggaagaagtttctagaagtactagcgtagaaggcggacaattagaagattttgattttagctcttctggtggtaatttgttgaaagaatcagagatgtgtacggcagatgaaattttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="135761" stop="136764"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136061" g_stop="136464" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="404" r_length="404" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E333441" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333441" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136061" e_stop="136464"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGACTTACAAACAAGGAACGAACAATTTTCTATTGTCGCCTGCAAGCTTATTCCTACATCCCATTTGTCTCCCTCTTTATATAACTGTTCCTCTTTTTTAACTATATTATTCTATATCGACCTCGATCAACAAGAACAAGAGCAAGAAAAAATGATGAAAATTACTAGGGAAAGCGAAGAAATTGTTCTCCTCGAAGAACAATACGATGAATTAGAAGACGAATATGATGAAGAAGCATTATCACTGTGTGATCTTCCGAACAATGAAGAGGACGAAAAGAAGGAAGAAGTTTCTAGAAGTACTAGCGTAGAAGGCGGACAATTAGAAGATTTTGATTTTAGCTCTTCTGGTGGTAATTTGTTGAAAGAATCAGAGATGTGTACGGCAGATGAAATTTTCTA</genome_strand>
        <mrna_strand>CTTGACTTACAAACAAGGAACGAACAATTTTCTATTGTCGCCTGCAAGCTTATTCCTACATCCCATTTGTCTCCCTCTTTATATAACTGTTCCTCTTTTTTAACTATATTATTCTATATCGACCTCGATCAACAAGAACAAGAGCAAGAAAAAATGATGAAAATTACTAGGGAAAGCGAAGAAATTGTTCTCCTCGAAGAACAATACGATGAATTAGAAGACGAATATGATGAAGAAGCATTATCACTGTGTGATCTTCCGAACAATGAAGAGGACGAAAAGAAGGAAGAAGTTTCTAGAAGTACTAGCGTAGAAGGCGGACAATTAGAAGATTTTGATTTTAGCTCTTCTGGTGGTAATTTGTTGAAAGAATCAGAGATGTGTACGGCAGATGAAATTTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E471145" ref_strand="+" ref_description="SGN-E471145 [cSTB-22-L13]">
      <seq>attttctattgtcgcctgcaagcttattcctttacatcccatttgtctccctctctatataactgttcctctttttaactatatttttctatctatatcgaccacaacaagaagaagaaaaaatgatgaaaattactagggaaagcgaagaaattgttctccttagagaacaagaagaggaattagaagaagacgaagaagcattatcactgtgtgatcttccgaacaatgaagagaacgaaacgaaggaagaagcttctagaagtactagtgaagaagccgccggccaattggaagattttgattttagctcttccggtggtaatttgttgaaagagtcagagatgtgtacggcagatgaaattttctataaaggccaaatattaccgttgcgtcattcaattagtttgccaagtgatcggcgcaattgtcatgacacaaattcaagcagtagaagtagcagtattcgaagccaacgttcatctagcagtggcagttcatctaatttcaacacaaaataccagcctaagattcgaaatcaatttcattcccatcctag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="135787" stop="136953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136087" g_stop="136653" g_length="567"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E471145" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E471145" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136087" e_stop="136653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTCTATTGTCGCCTGCAAGCTTATTCC--TACATCCCATTTGTCTCCCTCTTTATATAACTGTTCCTCTTTTTTAACTATATTATTCTATATCGACCTCGATCAACAAGAACAAGAGCAAGAAAAAATGATGAAAATTACTAGGGAAAGCGAAGAAATTGTTCTCCTCGAAGAACAATACGATGAATTAGAAGACGAATATGATGAAGAAGCATTATCACTGTGTGATCTTCCGAACAATGAAGAGGACGAAAAGAAGGAAGAAGTTTCTAGAAGTACTAGCGTAGAAG--G-CGGACAATTAGAAGATTTTGATTTTAGCTCTTCTGGTGGTAATTTGTTGAAAGAATCAGAGATGTGTACGGCAGATGAAATTTTCTACAAAGGCCAAATATTACCGTTGCGTCATTCAATTAGTTTGCCAAGTGATCGGCGCAATTGTCATGATACAAATTCAAGCAGTAGAAGTAGCAGTATTCGAAGCCAACGTTCATCTAGCAGTGGCAGTTCATCTAATTTCAACACGAAATATCAGCCTAAAATTCGAAATCAATTTCATTCTCATCCTAG</genome_strand>
        <mrna_strand>ATTTTCTATTGTCGCCTGCAAGCTTATTCCTTTACATCCCATTTGTCTCCCTCTCTATATAACTGTTCCTC-TTTTTAACTATATTTTTCTA--TCTATATCGA-CCACAACAA-GA-AG-AAGAAAAAATGATGAAAATTACTAGGGAAAGCGAAGAAATTGTTCTCCTTAGAGAACAAGAAGAGGAATTAG-A-A-G-A-A-GACGAAGAAGCATTATCACTGTGTGATCTTCCGAACAATGAAGAGAACGAAACGAAGGAAGAAGCTTCTAGAAGTACTAGTGAAGAAGCCGCCGGCCAATTGGAAGATTTTGATTTTAGCTCTTCCGGTGGTAATTTGTTGAAAGAGTCAGAGATGTGTACGGCAGATGAAATTTTCTATAAAGGCCAAATATTACCGTTGCGTCATTCAATTAGTTTGCCAAGTGATCGGCGCAATTGTCATGACACAAATTCAAGCAGTAGAAGTAGCAGTATTCGAAGCCAACGTTCATCTAGCAGTGGCAGTTCATCTAATTTCAACACAAAATACCAGCCTAAGATTCGAAATCAATTTCATTCCCATCCTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E371081" ref_strand="+" ref_description="SGN-E371081 [TUS-29-L17](-)">
      <seq>ctaaaattcgaaatcaatttcattctcatcctagtccaacacctcaggttcgattttctaaagttagttttcaatcaaatgtcaacaattccacacgaaaatcagcattgtggagtctatttcgcgttggcctagttacaccaccagaaattgcattacaagatctgaaaaacagaggaaacagggatatttcaggaagtcgaaatagcacgagcagtagtagcagcgggagcttcggcaataatgataataagatgagaattaagaaaacgaaacagaggttttctctaggcagctgtaaatgttcagcaaatgtggtagaaacagttccaatcgtgaacagtagaagtacaattaagaaaataagaaaagccacaggggaccatgaacatgaagataagaaggattcatcagagaatatcaaatcgacaaaaaagcaagcaatgtcacgtcatcgaacgtttgagtggttaaagcaactttcactagaaggtccatcagatgaaacataaagatttcaaagtatcacgcatgcttagcttcttttttttcttctttttttcatgtaatgtaatgtaactttttttttttttgagtagtggaatcatgaagttgattaattgaagtaattgaggacgcaattataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="136320" stop="137567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136620" g_stop="137274" g_length="655"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="654" r_length="654" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E371081" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371081" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136620" e_stop="137274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAAATTCGAAATCAATTTCATTCTCATCCTAGTCCAACACCTCAGGTTCGATTTTCTAAAGTTAGTTTTCAATCAAATGTCAACAATTCCACACGAAAATCAGCATTGTGGAGTCTATTTCGCGTTGGCCTAGTTACACCACCAGAAATTGCATTACAAGATCTGAAAAACAGAGGAAACAGGGATATTTCAGGAAGTCGAAATAGCACGAGCAGTAGTAGCAGCGGGAGCTTCGGCAATAATGATAATAAGATGAGAATTAAGAAAACGAAACAGAGGTTTTCTCTAGGCAGCTGTAAATGTTCAGCAAATGTGGTAGAAACAGTTCCAATCGTGAACAGTAGAAGTACAATTAAGAAAATAAGAAAAGCCACAGGGGACCATGAACATGAAGATAAGAAGGATTCATCAGAGAATATCAAATCGACAAAAAAGCAAGCAATGTCACGTCATCGAACGTTTGAGTGGTTAAAGCAACTTTCACTAGAAGGTCCATCAGATGAAACATAAAGATTTCAAAGTATCACGCATGCTTAGCTTCTTTTTTTTCTTCTTTTTTTCATGTAATGTAATGTAACTTTTTTTTTTTTTTGAGTAGTGGAATCATGAAGTTGATTAATTGAAGTAATTGAGGACGCAATTATAATGGTAGC</genome_strand>
        <mrna_strand>CTAAAATTCGAAATCAATTTCATTCTCATCCTAGTCCAACACCTCAGGTTCGATTTTCTAAAGTTAGTTTTCAATCAAATGTCAACAATTCCACACGAAAATCAGCATTGTGGAGTCTATTTCGCGTTGGCCTAGTTACACCACCAGAAATTGCATTACAAGATCTGAAAAACAGAGGAAACAGGGATATTTCAGGAAGTCGAAATAGCACGAGCAGTAGTAGCAGCGGGAGCTTCGGCAATAATGATAATAAGATGAGAATTAAGAAAACGAAACAGAGGTTTTCTCTAGGCAGCTGTAAATGTTCAGCAAATGTGGTAGAAACAGTTCCAATCGTGAACAGTAGAAGTACAATTAAGAAAATAAGAAAAGCCACAGGGGACCATGAACATGAAGATAAGAAGGATTCATCAGAGAATATCAAATCGACAAAAAAGCAAGCAATGTCACGTCATCGAACGTTTGAGTGGTTAAAGCAACTTTCACTAGAAGGTCCATCAGATGAAACATAAAGATTTCAAAGTATCACGCATGCTTAGCTTCTTTTTTTTCTTCTTTTTTTCATGTAATGTAATGTAAC-TTTTTTTTTTTTTGAGTAGTGGAATCATGAAGTTGATTAATTGAAGTAATTGAGGACGCAATTATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E280332" ref_strand="+" ref_description="SGN-E280332 [cLER-1-O1](-)">
      <seq>agcattgtggagtctatttcgcgttggcctagttacaccaccagaaattgcattacaagatctgaaaaacagaggaaacagggatatttcaggaagtcgaaatagcacgagcagtagtagcagcgggagcttcggcaataatgataataagatgagaattaagaaaacgaaacagaggttttctctaggcagctgtaaatgttcagcaaatgtggtagaaacagttccaatcgtgaacagtagaagtacaattaagaaaataagaaaagccacaggggaccatgaacatgaagataagaaggattcatcagagaatatcaaatcgacaaaaaagcaagcaatgtcacgtcatcgaacgtttgagtggttaaagcaactttcactagaaggtccatcagatgaaacataaagatttcaaagtatcacgcatgcttagcttcttttttttcttctttttttcatgtaatgtaatgtaactttttttttttttgagtagtggaatcatgaagtaaattaattgaagtaattgaggacgcaattataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="136423" stop="137567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136723" g_stop="137274" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="551" r_length="551" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E280332" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136723" e_stop="137274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATTGTGGAGTCTATTTCGCGTTGGCCTAGTTACACCACCAGAAATTGCATTACAAGATCTGAAAAACAGAGGAAACAGGGATATTTCAGGAAGTCGAAATAGCACGAGCAGTAGTAGCAGCGGGAGCTTCGGCAATAATGATAATAAGATGAGAATTAAGAAAACGAAACAGAGGTTTTCTCTAGGCAGCTGTAAATGTTCAGCAAATGTGGTAGAAACAGTTCCAATCGTGAACAGTAGAAGTACAATTAAGAAAATAAGAAAAGCCACAGGGGACCATGAACATGAAGATAAGAAGGATTCATCAGAGAATATCAAATCGACAAAAAAGCAAGCAATGTCACGTCATCGAACGTTTGAGTGGTTAAAGCAACTTTCACTAGAAGGTCCATCAGATGAAACATAAAGATTTCAAAGTATCACGCATGCTTAGCTTCTTTTTTTTCTTCTTTTTTTCATGTAATGTAATGTAACTTTTTTTTTTTTTTGAGTAGTGGAATCATGAAGTTGATTAATTGAAGTAATTGAGGACGCAATTATAATGGTAGC</genome_strand>
        <mrna_strand>AGCATTGTGGAGTCTATTTCGCGTTGGCCTAGTTACACCACCAGAAATTGCATTACAAGATCTGAAAAACAGAGGAAACAGGGATATTTCAGGAAGTCGAAATAGCACGAGCAGTAGTAGCAGCGGGAGCTTCGGCAATAATGATAATAAGATGAGAATTAAGAAAACGAAACAGAGGTTTTCTCTAGGCAGCTGTAAATGTTCAGCAAATGTGGTAGAAACAGTTCCAATCGTGAACAGTAGAAGTACAATTAAGAAAATAAGAAAAGCCACAGGGGACCATGAACATGAAGATAAGAAGGATTCATCAGAGAATATCAAATCGACAAAAAAGCAAGCAATGTCACGTCATCGAACGTTTGAGTGGTTAAAGCAACTTTCACTAGAAGGTCCATCAGATGAAACATAAAGATTTCAAAGTATCACGCATGCTTAGCTTCTTTTTTTTCTTCTTTTTTTCATGTAATGTAATGTAAC-TTTTTTTTTTTTTGAGTAGTGGAATCATGAAGTAAATTAATTGAAGTAATTGAGGACGCAATTATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E395610" ref_strand="+" ref_description="SGN-E395610 [TUS-16-H20](-)">
      <seq>gccctagctactggtggaatcctgagtcttatcttggtcctgctgcactactccatgccaatagatggatcatggatagccgtgatgaacatactctggagcgcctggacgcagttaatgatgaattcaagctttatcgctgccacactattttgaactgttctcgtgcttgcccaaagggatttaatcctggcaagctcagaacatcaagcgcctggagatggcgccttgagcctgcactctgcagtgtagtgtaccagtctattctgctaacattgattttggaggaccagtaggaggtagttctcaaaataatttatgcacagatcgtaatttgctttctgagatttttttttggtgctagggtgttgcccttccccgagccctgtgtgaatatgggattcttttgtgcaccgtgctgccttattcgagatgaaaggtgcatctcacctgaaatattgtactaacaattagtatgatagctgaagtgaagcaaacatgtaatagcagagagtatatacaaatttatgaactgatttatcatagaaaataatgatttctataaatattcgtttgaaaatatacctcataaaaacttcatcaattatataaaacaaaatttatattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="140573" stop="137985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140273" g_stop="140210" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="140209" i_stop="138837" i_length="1373">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="138836" g_stop="138263" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="638" r_length="574" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E395610" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395610" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140273" e_stop="140210"/>
          <exon e_start="138836" e_stop="138263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCTAGCTACTGGTGGAATCCTGAGTCTTATCTTGGTCCTGCTGCACTACTCCATGCCAATAGGTAATATTTACTTGATTTTTTTTTCATGTTAAGCTCTTCCTGTTTTGACTTCACTCTCTTTTAATGTTCTGTATCTTTTAAATTGTTATATTCTGGTTGCATTTGGATCAAATAATAAGTTAAAGATACCTATAATTTGTCGGCAGAGTTACCGTTATATTCCTTATTGGTGTTAGCCTGGTAGGTAGCATGTATCTCATGAAATTAGTCGAGTAACCATGGTCAGTAAGATTTTAGTAAGTACAACAACATGTATGGTACTTGTGCTTAAATGTAACAGGATGCCCATAAATTTTGTGTGAATAAATTGTATCAGATTAAGAAAGTTGTGTTCCTTTTAGATACAAAGTGAATCTCATTTATATGAGGTGCAACTTCTTGTAGAAGTTTGATGAATCGTATGCGGTAGGATCTTATTGTTTGGTAAAATGCAACTTCTATGGAAGTCTTGGATATTATTCTGAGTTATCACTAGACAACTTTGAAACATATTACTTTTCTCAACCTGCTAATCCCTTGTTGGTTCATTTCTTTGTTGCTAGTTTCTAACCTATGGCATCTCTGTTATTTGACTCAAAATTTAAGAATATCCAAGCAACATCTCTTTTTACCTATACAATCTTTCAGATTTTTGACTATCATGTGATTAGTTTTTTTGTCTGTGCTCTCCAAGCCTAACTAATCTGCAGAGGAAACTAGGTATTTCCTCCTTTGCATAAACATCATGCCCTGCTCTCTCATTCCCTCTGCTGTCTACGCCATCACAACTATTTCTTGGAGCACCCCGCACCTATTGTTCTGATCGTTCCTCTCTAGAACAATCAGCTTTTCTCAATTCTTAGATTAGCTGCAGGGTTGACCTACATTATGTTTGGTGTGTGCTCAAGCACCCATTGTCTGTTATTCTTTCTCAATGCGGAAATTTCAAGTGTGGATGGAAAATGTTCATATTACATTCTGCGCTTGTCATCATTTAAAAATAATGACACCAAATGCAGATGAAGGGACCTTTTCTGTTCAGTTCTACAAACTTGGAAATTTATTATGCCAAAGGGAATATTAGAGAGATGCTGATATCTGTGGGGGCAAACTCAACTACTCAACGGATGGTTTAGGTTTCTTTCCAAACTGCCTTTAGAGTTGTATGATTTATGTGCTCAGAGATGTAGAACGTTATTTCCCTCGGTCATTTGCATGATGAGGGGATAAGAGTTTTAAATTTCTGAAATTTCTGTACTTGCCTTGATGTTATTAAGAGGTTTGGATTGTATATAAGTTGCTCTACCCCCTTAACCCTTCTATCCATTGCTATTTCAGATGTTGTTCATTATTATATGTACTGAAAGGGGTTATATCTCAACTTTTAAATGTAGATGGATCATGGATAGCCGTGATGAACATACTCTGGAGCGCCTGGACGCAGTTAATGATGAATTCAAGCTTTATCGCTGCCACACTATTTTGAACTGTTCTCGTGCTTGCCCAAAGGGATTTAATCCTGGCAAGCTCAGAACATCAAGCGCCTGGAGATGGCGCCTTGAGCCTGCACTCTGCAGTGTAGTGTACCAGTCTATTCTGCTAACATTGATTTTGGAGGACCAGTAGGAGGTAGTTCTCAAAATAATTTATGCACAGATCGTAATTTGCTTTCTGAGATTTTTTTTTGGTGCTAGGGTGTTGCCCTTCCCCGAGCCCTGTGTGAATATGGGATTCTTTTGTGCACCGTGCTGCCTTATTCGAGATGAAAGGTGCATCTCACCTGAAATATTGTACTAACAATTAGTATGATAGCTGAAGTGAAGCAAACATGTAATAGCAGAGAGTATATACAAATTTATGAACTGATTTATCATAGAAAATAATGATTTCTATAAATATTCGTTTGAAATTATACCTCATAAAAACTTCATCAATTATATAAAACATTTCTTATATTATCGATGGTAG</genome_strand>
        <mrna_strand>GCCCTAGCTACTGGTGGAATCCTGAGTCTTATCTTGGTCCTGCTGCACTACTCCATGCCAATAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGATCATGGATAGCCGTGATGAACATACTCTGGAGCGCCTGGACGCAGTTAATGATGAATTCAAGCTTTATCGCTGCCACACTATTTTGAACTGTTCTCGTGCTTGCCCAAAGGGATTTAATCCTGGCAAGCTCAGAACATCAAGCGCCTGGAGATGGCGCCTTGAGCCTGCACTCTGCAGTGTAGTGTACCAGTCTATTCTGCTAACATTGATTTTGGAGGACCAGTAGGAGGTAGTTCTCAAAATAATTTATGCACAGATCGTAATTTGCTTTCTGAGATTTTTTTTTGGTGCTAGGGTGTTGCCCTTCCCCGAGCCCTGTGTGAATATGGGATTCTTTTGTGCACCGTGCTGCCTTATTCGAGATGAAAGGTGCATCTCACCTGAAATATTGTACTAACAATTAGTATGATAGCTGAAGTGAAGCAAACATGTAATAGCAGAGAGTATATACAAATTTATGAACTGATTTATCATAGAAAATAATGATTTCTATAAATATTCGTTTGAAAATATACCTCATAAAAACTTCATCAATTATATAAAACAAAATTTATATTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E277000" ref_strand="+" ref_description="SGN-E277000 [cLEN-22-F18]">
      <seq>tcaaagaatacaaaatcgatctgaaggaatgcggacctatggttttagatgcgctaatcaaaatcaagaatgaaattgaccctacacttaccttcaggagatcctgtagagaagggatctgtggttcatgtgctatgaacatcgacggatgtaatggactcgcttgtttgaccaagatctcgtcggattctgaatcgacgattacgccgttgccacatatgtttgtcattaaggatctggtggtggatatgactaatttctataatcagtacaagtctattgagccttggcttaagaggaagacacctgcaccaacgcctgggaaggagataccacagagcaagagcgatagggctaagttggatgggatgtacgaatgtattctatgtgcttgctgtagcacatcatgtcctagctactggtggaatcctgagtcttatcttggtcccgctgcactcctccatgccaaccgatggatcatggatagccgtgatgaatatactcaggagcgcctggatgcagttaatgacgaattcaagctttatcgctgccatactattctgaattgttctcgtgcttgcccaaagggattaaatcccgggaagcatattcagaacatcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="140981" stop="138403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140681" g_stop="140210" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="472" r_length="472" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="140209" i_stop="138837" i_length="1373">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="138836" g_stop="138705" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="604" r_length="132" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E277000" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140681" e_stop="140210"/>
          <exon e_start="138836" e_stop="138705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAGAATACAAAATTGATCTGAAGGAATGTGGCCCTATGGTCTTAGACGCCCTAATCAAAATCAAGAATGAAGTTGACCCTTCACCAACCTTCAGAAGATCTTGCAGAGAAGGGATCTGTGGGTCCTGTGCCATGAACATCGACGGCTGTAATGGACTCGCTTGTTTGACAAAGATCTCATCGGATTCTGTATCGACGATTACGCCACTGCCACATATGTTTGTGATTAAGGATTTGGTAGTGGATATGACTAATTTTTATAATCAGTATAAGTCTATTGAGCCTTGGCTGAAGAGAAAAACACCTGCGCCAACGCCTGGAAAGGAGATACCTCAGAGCAAGAGCGATAAGGCTAAGTTGGATGGGATGTACGAGTGTATTCTCTGTGCTTGTTGTAGTACATCATGCCCTAGCTACTGGTGGAATCCTGAGTCTTATCTTGGTCCTGCTGCACTACTCCATGCCAATAGGTAATATTTACTTGATTTTTTTTTCATGTTAAGCTCTTCCTGTTTTGACTTCACTCTCTTTTAATGTTCTGTATCTTTTAAATTGTTATATTCTGGTTGCATTTGGATCAAATAATAAGTTAAAGATACCTATAATTTGTCGGCAGAGTTACCGTTATATTCCTTATTGGTGTTAGCCTGGTAGGTAGCATGTATCTCATGAAATTAGTCGAGTAACCATGGTCAGTAAGATTTTAGTAAGTACAACAACATGTATGGTACTTGTGCTTAAATGTAACAGGATGCCCATAAATTTTGTGTGAATAAATTGTATCAGATTAAGAAAGTTGTGTTCCTTTTAGATACAAAGTGAATCTCATTTATATGAGGTGCAACTTCTTGTAGAAGTTTGATGAATCGTATGCGGTAGGATCTTATTGTTTGGTAAAATGCAACTTCTATGGAAGTCTTGGATATTATTCTGAGTTATCACTAGACAACTTTGAAACATATTACTTTTCTCAACCTGCTAATCCCTTGTTGGTTCATTTCTTTGTTGCTAGTTTCTAACCTATGGCATCTCTGTTATTTGACTCAAAATTTAAGAATATCCAAGCAACATCTCTTTTTACCTATACAATCTTTCAGATTTTTGACTATCATGTGATTAGTTTTTTTGTCTGTGCTCTCCAAGCCTAACTAATCTGCAGAGGAAACTAGGTATTTCCTCCTTTGCATAAACATCATGCCCTGCTCTCTCATTCCCTCTGCTGTCTACGCCATCACAACTATTTCTTGGAGCACCCCGCACCTATTGTTCTGATCGTTCCTCTCTAGAACAATCAGCTTTTCTCAATTCTTAGATTAGCTGCAGGGTTGACCTACATTATGTTTGGTGTGTGCTCAAGCACCCATTGTCTGTTATTCTTTCTCAATGCGGAAATTTCAAGTGTGGATGGAAAATGTTCATATTACATTCTGCGCTTGTCATCATTTAAAAATAATGACACCAAATGCAGATGAAGGGACCTTTTCTGTTCAGTTCTACAAACTTGGAAATTTATTATGCCAAAGGGAATATTAGAGAGATGCTGATATCTGTGGGGGCAAACTCAACTACTCAACGGATGGTTTAGGTTTCTTTCCAAACTGCCTTTAGAGTTGTATGATTTATGTGCTCAGAGATGTAGAACGTTATTTCCCTCGGTCATTTGCATGATGAGGGGATAAGAGTTTTAAATTTCTGAAATTTCTGTACTTGCCTTGATGTTATTAAGAGGTTTGGATTGTATATAAGTTGCTCTACCCCCTTAACCCTTCTATCCATTGCTATTTCAGATGTTGTTCATTATTATATGTACTGAAAGGGGTTATATCTCAACTTTTAAATGTAGATGGATCATGGATAGCCGTGATGAACATACTCTGGAGCGCCTGGACGCAGTTAATGATGAATTCAAGCTTTATCGCTGCCACACTATTTTGAACTGTTCTCGTGCTTGCCCAAAGGGATTTAATCCTGGCAA</genome_strand>
        <mrna_strand>TCAAAGAATACAAAATCGATCTGAAGGAATGCGGACCTATGGTTTTAGATGCGCTAATCAAAATCAAGAATGAAATTGACCCTACACTTACCTTCAGGAGATCCTGTAGAGAAGGGATCTGTGGTTCATGTGCTATGAACATCGACGGATGTAATGGACTCGCTTGTTTGACCAAGATCTCGTCGGATTCTGAATCGACGATTACGCCGTTGCCACATATGTTTGTCATTAAGGATCTGGTGGTGGATATGACTAATTTCTATAATCAGTACAAGTCTATTGAGCCTTGGCTTAAGAGGAAGACACCTGCACCAACGCCTGGGAAGGAGATACCACAGAGCAAGAGCGATAGGGCTAAGTTGGATGGGATGTACGAATGTATTCTATGTGCTTGCTGTAGCACATCATGTCCTAGCTACTGGTGGAATCCTGAGTCTTATCTTGGTCCCGCTGCACTCCTCCATGCCAACCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGATCATGGATAGCCGTGATGAATATACTCAGGAGCGCCTGGATGCAGTTAATGACGAATTCAAGCTTTATCGCTGCCATACTATTCTGAATTGTTCTCGTGCTTGCCCAAAGGGATTAAATCCCGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E253795" ref_strand="+" ref_description="SGN-E253795 [cLEG-28-A12]">
      <seq>aaatttaccgatggactccagacaacccagggaaacctgagctcaaagaatacaaaatcgatctgaaggaatgcggacctatggttttagatgcgctaatcaaaatcaagaatgaaattgaccctacacttaccttcaggagatcctgtagagaagggatctgtggttcatgtgctatgaacatcgacggatgtaatggactcgcttgtttgaccaagatctcgtcggattctgaatcgacgattacgccgttgccacatatgtttgtcattaaggatctggtggtggatatgactaatttctataatcagtacaagtctattgagccttggcttaagaggaagacacctgcaccaacgcctgggaaggagataccacagagcaagagcgatagggctaagttggatgggatgtacgaatgtattctatgtgcttgctgtagcacatcatgtcctagctactggtggaatcctgagtcttatcttggtcccgctgcactcctccatgccaaccgatggatcatggatagccgtgatgaatatactcaggagcgcctggatgcagttaatgacgaattcaagctttatcgctgccatactattctgaattgttctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="141023" stop="138432"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140723" g_stop="140210" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="514" r_length="514" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="140209" i_stop="138837" i_length="1373">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="138836" g_stop="138732" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="619" r_length="105" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E253795" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253795" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140723" e_stop="140210"/>
          <exon e_start="138836" e_stop="138732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTACCGATGGAATCCAGATAACCCAGGGAAACCCGAGCTCCAAGAATACAAAATTGATCTGAAGGAATGTGGCCCTATGGTCTTAGACGCCCTAATCAAAATCAAGAATGAAGTTGACCCTTCACCAACCTTCAGAAGATCTTGCAGAGAAGGGATCTGTGGGTCCTGTGCCATGAACATCGACGGCTGTAATGGACTCGCTTGTTTGACAAAGATCTCATCGGATTCTGTATCGACGATTACGCCACTGCCACATATGTTTGTGATTAAGGATTTGGTAGTGGATATGACTAATTTTTATAATCAGTATAAGTCTATTGAGCCTTGGCTGAAGAGAAAAACACCTGCGCCAACGCCTGGAAAGGAGATACCTCAGAGCAAGAGCGATAAGGCTAAGTTGGATGGGATGTACGAGTGTATTCTCTGTGCTTGTTGTAGTACATCATGCCCTAGCTACTGGTGGAATCCTGAGTCTTATCTTGGTCCTGCTGCACTACTCCATGCCAATAGGTAATATTTACTTGATTTTTTTTTCATGTTAAGCTCTTCCTGTTTTGACTTCACTCTCTTTTAATGTTCTGTATCTTTTAAATTGTTATATTCTGGTTGCATTTGGATCAAATAATAAGTTAAAGATACCTATAATTTGTCGGCAGAGTTACCGTTATATTCCTTATTGGTGTTAGCCTGGTAGGTAGCATGTATCTCATGAAATTAGTCGAGTAACCATGGTCAGTAAGATTTTAGTAAGTACAACAACATGTATGGTACTTGTGCTTAAATGTAACAGGATGCCCATAAATTTTGTGTGAATAAATTGTATCAGATTAAGAAAGTTGTGTTCCTTTTAGATACAAAGTGAATCTCATTTATATGAGGTGCAACTTCTTGTAGAAGTTTGATGAATCGTATGCGGTAGGATCTTATTGTTTGGTAAAATGCAACTTCTATGGAAGTCTTGGATATTATTCTGAGTTATCACTAGACAACTTTGAAACATATTACTTTTCTCAACCTGCTAATCCCTTGTTGGTTCATTTCTTTGTTGCTAGTTTCTAACCTATGGCATCTCTGTTATTTGACTCAAAATTTAAGAATATCCAAGCAACATCTCTTTTTACCTATACAATCTTTCAGATTTTTGACTATCATGTGATTAGTTTTTTTGTCTGTGCTCTCCAAGCCTAACTAATCTGCAGAGGAAACTAGGTATTTCCTCCTTTGCATAAACATCATGCCCTGCTCTCTCATTCCCTCTGCTGTCTACGCCATCACAACTATTTCTTGGAGCACCCCGCACCTATTGTTCTGATCGTTCCTCTCTAGAACAATCAGCTTTTCTCAATTCTTAGATTAGCTGCAGGGTTGACCTACATTATGTTTGGTGTGTGCTCAAGCACCCATTGTCTGTTATTCTTTCTCAATGCGGAAATTTCAAGTGTGGATGGAAAATGTTCATATTACATTCTGCGCTTGTCATCATTTAAAAATAATGACACCAAATGCAGATGAAGGGACCTTTTCTGTTCAGTTCTACAAACTTGGAAATTTATTATGCCAAAGGGAATATTAGAGAGATGCTGATATCTGTGGGGGCAAACTCAACTACTCAACGGATGGTTTAGGTTTCTTTCCAAACTGCCTTTAGAGTTGTATGATTTATGTGCTCAGAGATGTAGAACGTTATTTCCCTCGGTCATTTGCATGATGAGGGGATAAGAGTTTTAAATTTCTGAAATTTCTGTACTTGCCTTGATGTTATTAAGAGGTTTGGATTGTATATAAGTTGCTCTACCCCCTTAACCCTTCTATCCATTGCTATTTCAGATGTTGTTCATTATTATATGTACTGAAAGGGGTTATATCTCAACTTTTAAATGTAGATGGATCATGGATAGCCGTGATGAACATACTCTGGAGCGCCTGGACGCAGTTAATGATGAATTCAAGCTTTATCGCTGCCACACTATTTTGAACTGTTCTCGTGC</genome_strand>
        <mrna_strand>AAATTTACCGATGGACTCCAGACAACCCAGGGAAACCTGAGCTCAAAGAATACAAAATCGATCTGAAGGAATGCGGACCTATGGTTTTAGATGCGCTAATCAAAATCAAGAATGAAATTGACCCTACACTTACCTTCAGGAGATCCTGTAGAGAAGGGATCTGTGGTTCATGTGCTATGAACATCGACGGATGTAATGGACTCGCTTGTTTGACCAAGATCTCGTCGGATTCTGAATCGACGATTACGCCGTTGCCACATATGTTTGTCATTAAGGATCTGGTGGTGGATATGACTAATTTCTATAATCAGTACAAGTCTATTGAGCCTTGGCTTAAGAGGAAGACACCTGCACCAACGCCTGGGAAGGAGATACCACAGAGCAAGAGCGATAGGGCTAAGTTGGATGGGATGTACGAATGTATTCTATGTGCTTGCTGTAGCACATCATGTCCTAGCTACTGGTGGAATCCTGAGTCTTATCTTGGTCCCGCTGCACTCCTCCATGCCAACCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGATCATGGATAGCCGTGATGAATATACTCAGGAGCGCCTGGATGCAGTTAATGACGAATTCAAGCTTTATCGCTGCCATACTATTCTGAATTGTTCTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E237584" ref_strand="+" ref_description="SGN-E237584 [cLED-19-L16]">
      <seq>caaaatcgatctgaaggaatgcggacctatggttttagatgcgctaatcaaaatcaagaatgaaattgaccctacacttaccttcaggagatcctgtagagaagggatctgtggttcatgtgctatgaacatcgacggatgtaatggactcgcttgtttgaccaagatctcgtcggattctgaatcgacgattacgccgttgccacatatgtttgtcattaaggatctggtggtggatatgactaatttctataatcagtacaagtctattgagccttggcttaagaggaagacacctgcaccaacgcctgggaaggagataccacagagcaagagcgatagggctaagttggatgggatgtacgaatgtattctatgtgcttgctgtagcacatcatgtcctagctactggtggaatcctgagtcttatcttggtcccgctgcactcctccatgccaaccgatggatcatggatagccgtgatgaatatactcaggagcgcctggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="140971" stop="138492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140671" g_stop="140210" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="462" r_length="462" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="140209" i_stop="138837" i_length="1373">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="138836" g_stop="138791" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="508" r_length="46" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E237584" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140671" e_stop="140210"/>
          <exon e_start="138836" e_stop="138791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATTGATCTGAAGGAATGTGGCCCTATGGTCTTAGACGCCCTAATCAAAATCAAGAATGAAGTTGACCCTTCACCAACCTTCAGAAGATCTTGCAGAGAAGGGATCTGTGGGTCCTGTGCCATGAACATCGACGGCTGTAATGGACTCGCTTGTTTGACAAAGATCTCATCGGATTCTGTATCGACGATTACGCCACTGCCACATATGTTTGTGATTAAGGATTTGGTAGTGGATATGACTAATTTTTATAATCAGTATAAGTCTATTGAGCCTTGGCTGAAGAGAAAAACACCTGCGCCAACGCCTGGAAAGGAGATACCTCAGAGCAAGAGCGATAAGGCTAAGTTGGATGGGATGTACGAGTGTATTCTCTGTGCTTGTTGTAGTACATCATGCCCTAGCTACTGGTGGAATCCTGAGTCTTATCTTGGTCCTGCTGCACTACTCCATGCCAATAGGTAATATTTACTTGATTTTTTTTTCATGTTAAGCTCTTCCTGTTTTGACTTCACTCTCTTTTAATGTTCTGTATCTTTTAAATTGTTATATTCTGGTTGCATTTGGATCAAATAATAAGTTAAAGATACCTATAATTTGTCGGCAGAGTTACCGTTATATTCCTTATTGGTGTTAGCCTGGTAGGTAGCATGTATCTCATGAAATTAGTCGAGTAACCATGGTCAGTAAGATTTTAGTAAGTACAACAACATGTATGGTACTTGTGCTTAAATGTAACAGGATGCCCATAAATTTTGTGTGAATAAATTGTATCAGATTAAGAAAGTTGTGTTCCTTTTAGATACAAAGTGAATCTCATTTATATGAGGTGCAACTTCTTGTAGAAGTTTGATGAATCGTATGCGGTAGGATCTTATTGTTTGGTAAAATGCAACTTCTATGGAAGTCTTGGATATTATTCTGAGTTATCACTAGACAACTTTGAAACATATTACTTTTCTCAACCTGCTAATCCCTTGTTGGTTCATTTCTTTGTTGCTAGTTTCTAACCTATGGCATCTCTGTTATTTGACTCAAAATTTAAGAATATCCAAGCAACATCTCTTTTTACCTATACAATCTTTCAGATTTTTGACTATCATGTGATTAGTTTTTTTGTCTGTGCTCTCCAAGCCTAACTAATCTGCAGAGGAAACTAGGTATTTCCTCCTTTGCATAAACATCATGCCCTGCTCTCTCATTCCCTCTGCTGTCTACGCCATCACAACTATTTCTTGGAGCACCCCGCACCTATTGTTCTGATCGTTCCTCTCTAGAACAATCAGCTTTTCTCAATTCTTAGATTAGCTGCAGGGTTGACCTACATTATGTTTGGTGTGTGCTCAAGCACCCATTGTCTGTTATTCTTTCTCAATGCGGAAATTTCAAGTGTGGATGGAAAATGTTCATATTACATTCTGCGCTTGTCATCATTTAAAAATAATGACACCAAATGCAGATGAAGGGACCTTTTCTGTTCAGTTCTACAAACTTGGAAATTTATTATGCCAAAGGGAATATTAGAGAGATGCTGATATCTGTGGGGGCAAACTCAACTACTCAACGGATGGTTTAGGTTTCTTTCCAAACTGCCTTTAGAGTTGTATGATTTATGTGCTCAGAGATGTAGAACGTTATTTCCCTCGGTCATTTGCATGATGAGGGGATAAGAGTTTTAAATTTCTGAAATTTCTGTACTTGCCTTGATGTTATTAAGAGGTTTGGATTGTATATAAGTTGCTCTACCCCCTTAACCCTTCTATCCATTGCTATTTCAGATGTTGTTCATTATTATATGTACTGAAAGGGGTTATATCTCAACTTTTAAATGTAGATGGATCATGGATAGCCGTGATGAACATACTCTGGAGCGCCTGGAC</genome_strand>
        <mrna_strand>CAAAATCGATCTGAAGGAATGCGGACCTATGGTTTTAGATGCGCTAATCAAAATCAAGAATGAAATTGACCCTACACTTACCTTCAGGAGATCCTGTAGAGAAGGGATCTGTGGTTCATGTGCTATGAACATCGACGGATGTAATGGACTCGCTTGTTTGACCAAGATCTCGTCGGATTCTGAATCGACGATTACGCCGTTGCCACATATGTTTGTCATTAAGGATCTGGTGGTGGATATGACTAATTTCTATAATCAGTACAAGTCTATTGAGCCTTGGCTTAAGAGGAAGACACCTGCACCAACGCCTGGGAAGGAGATACCACAGAGCAAGAGCGATAGGGCTAAGTTGGATGGGATGTACGAATGTATTCTATGTGCTTGCTGTAGCACATCATGTCCTAGCTACTGGTGGAATCCTGAGTCTTATCTTGGTCCCGCTGCACTCCTCCATGCCAACCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGATCATGGATAGCCGTGATGAATATACTCAGGAGCGCCTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E395611" ref_strand="+" ref_description="SGN-E395611 [TUS-16-H20]">
      <seq>ttttttccgacgagctatttatagggttcagtcatcttcgccggcggcgaggctacttgttgcccgagctcacgcttcggacaccaaatcccagcaggtccaacctcaagtcgtttcaaatttaccgatggaatccagataacccagggaaacccgagctccaagaatacaaaattgatctgaaggaatgtggccctatggtcttagacgccctaatcaaaatcaagaatgaagttgacccttcaccaaccttcataagatcttgcagagaagggatctgtgggtcctgtgccatgaacatcgacggctgtaatggactcgcttgtttgacaaagatctcatcggattctgtatcgacgattacgccactgccacatatgtttgtgattaaggatttggtagtggatatgactaatttttataatcagtataagtctattgagccttggctgaagagaaaaacacctgcgccaacgcctggaaaggagatacctcagagcaagagcgataaggctaagttggatgggatgtacgagtgtattctctgtgcttgttgtagtacatcatgccctagctactggtggaatcctgagtcttatcttggtcctgctgcactactcctgccaatagatggatcatggatagccgtggtgaacctactctggaacgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="141140" stop="138495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140840" g_stop="140210" g_length="631"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="630" r_length="630" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="140209" i_stop="138837" i_length="1373">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="138836" g_stop="138795" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="672" r_length="42" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E395611" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140840" e_stop="140210"/>
          <exon e_start="138836" e_stop="138795"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATCCGACGAGCTATTTATAGGGTTCAGTCATCTTCGCCGGCGGCGAGGCTACTTGTTGCCCGAGCTCACGCTTCGGACACCAAATCCCAGCAGGTCCAACCTCAAGTCGTTTCAAATTTACCGATGGAATCCAGATAACCCAGGGAAACCCGAGCTCCAAGAATACAAAATTGATCTGAAGGAATGTGGCCCTATGGTCTTAGACGCCCTAATCAAAATCAAGAATGAAGTTGACCCTTCACCAACCTTCAGAAGATCTTGCAGAGAAGGGATCTGTGGGTCCTGTGCCATGAACATCGACGGCTGTAATGGACTCGCTTGTTTGACAAAGATCTCATCGGATTCTGTATCGACGATTACGCCACTGCCACATATGTTTGTGATTAAGGATTTGGTAGTGGATATGACTAATTTTTATAATCAGTATAAGTCTATTGAGCCTTGGCTGAAGAGAAAAACACCTGCGCCAACGCCTGGAAAGGAGATACCTCAGAGCAAGAGCGATAAGGCTAAGTTGGATGGGATGTACGAGTGTATTCTCTGTGCTTGTTGTAGTACATCATGCCCTAGCTACTGGTGGAATCCTGAGTCTTATCTTGGTCCTGCTGCACTACTCCATGCCAATAGGTAATATTTACTTGATTTTTTTTTCATGTTAAGCTCTTCCTGTTTTGACTTCACTCTCTTTTAATGTTCTGTATCTTTTAAATTGTTATATTCTGGTTGCATTTGGATCAAATAATAAGTTAAAGATACCTATAATTTGTCGGCAGAGTTACCGTTATATTCCTTATTGGTGTTAGCCTGGTAGGTAGCATGTATCTCATGAAATTAGTCGAGTAACCATGGTCAGTAAGATTTTAGTAAGTACAACAACATGTATGGTACTTGTGCTTAAATGTAACAGGATGCCCATAAATTTTGTGTGAATAAATTGTATCAGATTAAGAAAGTTGTGTTCCTTTTAGATACAAAGTGAATCTCATTTATATGAGGTGCAACTTCTTGTAGAAGTTTGATGAATCGTATGCGGTAGGATCTTATTGTTTGGTAAAATGCAACTTCTATGGAAGTCTTGGATATTATTCTGAGTTATCACTAGACAACTTTGAAACATATTACTTTTCTCAACCTGCTAATCCCTTGTTGGTTCATTTCTTTGTTGCTAGTTTCTAACCTATGGCATCTCTGTTATTTGACTCAAAATTTAAGAATATCCAAGCAACATCTCTTTTTACCTATACAATCTTTCAGATTTTTGACTATCATGTGATTAGTTTTTTTGTCTGTGCTCTCCAAGCCTAACTAATCTGCAGAGGAAACTAGGTATTTCCTCCTTTGCATAAACATCATGCCCTGCTCTCTCATTCCCTCTGCTGTCTACGCCATCACAACTATTTCTTGGAGCACCCCGCACCTATTGTTCTGATCGTTCCTCTCTAGAACAATCAGCTTTTCTCAATTCTTAGATTAGCTGCAGGGTTGACCTACATTATGTTTGGTGTGTGCTCAAGCACCCATTGTCTGTTATTCTTTCTCAATGCGGAAATTTCAAGTGTGGATGGAAAATGTTCATATTACATTCTGCGCTTGTCATCATTTAAAAATAATGACACCAAATGCAGATGAAGGGACCTTTTCTGTTCAGTTCTACAAACTTGGAAATTTATTATGCCAAAGGGAATATTAGAGAGATGCTGATATCTGTGGGGGCAAACTCAACTACTCAACGGATGGTTTAGGTTTCTTTCCAAACTGCCTTTAGAGTTGTATGATTTATGTGCTCAGAGATGTAGAACGTTATTTCCCTCGGTCATTTGCATGATGAGGGGATAAGAGTTTTAAATTTCTGAAATTTCTGTACTTGCCTTGATGTTATTAAGAGGTTTGGATTGTATATAAGTTGCTCTACCCCCTTAACCCTTCTATCCATTGCTATTTCAGATGTTGTTCATTATTATATGTACTGAAAGGGGTTATATCTCAACTTTTAAATGTAGATGGATCATGGATAGCCGTGATGAACATACTCTGGAGCGCCT</genome_strand>
        <mrna_strand>TTTTTTCCGACGAGCTATTTATAGGGTTCAGTCATCTTCGCCGGCGGCGAGGCTACTTGTTGCCCGAGCTCACGCTTCGGACACCAAATCCCAGCAGGTCCAACCTCAAGTCGTTTCAAATTTACCGATGGAATCCAGATAACCCAGGGAAACCCGAGCTCCAAGAATACAAAATTGATCTGAAGGAATGTGGCCCTATGGTCTTAGACGCCCTAATCAAAATCAAGAATGAAGTTGACCCTTCACCAACCTTCATAAGATCTTGCAGAGAAGGGATCTGTGGGTCCTGTGCCATGAACATCGACGGCTGTAATGGACTCGCTTGTTTGACAAAGATCTCATCGGATTCTGTATCGACGATTACGCCACTGCCACATATGTTTGTGATTAAGGATTTGGTAGTGGATATGACTAATTTTTATAATCAGTATAAGTCTATTGAGCCTTGGCTGAAGAGAAAAACACCTGCGCCAACGCCTGGAAAGGAGATACCTCAGAGCAAGAGCGATAAGGCTAAGTTGGATGGGATGTACGAGTGTATTCTCTGTGCTTGTTGTAGTACATCATGCCCTAGCTACTGGTGGAATCCTGAGTCTTATCTTGGTCCTGCTGCACTACTCC-TGCCAATAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGATCATGGATAGCCGTGGTGAACCTACTCTGGAACGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E747600" ref_strand="+" ref_description="SGN-E747600 [GI|5669040]">
      <seq>gcacgagcgatagggctaagttggatgggatgtacgaatgtattctatgtgcttgctgtagcacatcatgtcctagctactggtggaatcctgagtcttatcttggtccgctgcactcctgccatgccaaccgatggatcatggatagccgtgatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="140642" stop="138512"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140342" g_stop="140210" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="0.902"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="140209" i_stop="138837" i_length="1373">
            <donor d_prob="1.000" d_score="0.88"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="138836" g_stop="138812" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="158" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E747600" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>158</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747600" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140342" e_stop="140210"/>
          <exon e_start="138836" e_stop="138812"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGAGCGATAAGGCTAAGTTGGATGGGATGTACGAGTGTATTCTCTGTGCTTGTTGTAGTACATCATGCCCTAGCTACTGGTGGAATCCTGAGTCTTATCTTGGTCCTGCTGCACTACT-CCATGCCAATAGGTAATATTTACTTGATTTTTTTTTCATGTTAAGCTCTTCCTGTTTTGACTTCACTCTCTTTTAATGTTCTGTATCTTTTAAATTGTTATATTCTGGTTGCATTTGGATCAAATAATAAGTTAAAGATACCTATAATTTGTCGGCAGAGTTACCGTTATATTCCTTATTGGTGTTAGCCTGGTAGGTAGCATGTATCTCATGAAATTAGTCGAGTAACCATGGTCAGTAAGATTTTAGTAAGTACAACAACATGTATGGTACTTGTGCTTAAATGTAACAGGATGCCCATAAATTTTGTGTGAATAAATTGTATCAGATTAAGAAAGTTGTGTTCCTTTTAGATACAAAGTGAATCTCATTTATATGAGGTGCAACTTCTTGTAGAAGTTTGATGAATCGTATGCGGTAGGATCTTATTGTTTGGTAAAATGCAACTTCTATGGAAGTCTTGGATATTATTCTGAGTTATCACTAGACAACTTTGAAACATATTACTTTTCTCAACCTGCTAATCCCTTGTTGGTTCATTTCTTTGTTGCTAGTTTCTAACCTATGGCATCTCTGTTATTTGACTCAAAATTTAAGAATATCCAAGCAACATCTCTTTTTACCTATACAATCTTTCAGATTTTTGACTATCATGTGATTAGTTTTTTTGTCTGTGCTCTCCAAGCCTAACTAATCTGCAGAGGAAACTAGGTATTTCCTCCTTTGCATAAACATCATGCCCTGCTCTCTCATTCCCTCTGCTGTCTACGCCATCACAACTATTTCTTGGAGCACCCCGCACCTATTGTTCTGATCGTTCCTCTCTAGAACAATCAGCTTTTCTCAATTCTTAGATTAGCTGCAGGGTTGACCTACATTATGTTTGGTGTGTGCTCAAGCACCCATTGTCTGTTATTCTTTCTCAATGCGGAAATTTCAAGTGTGGATGGAAAATGTTCATATTACATTCTGCGCTTGTCATCATTTAAAAATAATGACACCAAATGCAGATGAAGGGACCTTTTCTGTTCAGTTCTACAAACTTGGAAATTTATTATGCCAAAGGGAATATTAGAGAGATGCTGATATCTGTGGGGGCAAACTCAACTACTCAACGGATGGTTTAGGTTTCTTTCCAAACTGCCTTTAGAGTTGTATGATTTATGTGCTCAGAGATGTAGAACGTTATTTCCCTCGGTCATTTGCATGATGAGGGGATAAGAGTTTTAAATTTCTGAAATTTCTGTACTTGCCTTGATGTTATTAAGAGGTTTGGATTGTATATAAGTTGCTCTACCCCCTTAACCCTTCTATCCATTGCTATTTCAGATGTTGTTCATTATTATATGTACTGAAAGGGGTTATATCTCAACTTTTAAATGTAGATGGATCATGGATAGCCGTGATGAA</genome_strand>
        <mrna_strand>GCACGAGCGATAGGGCTAAGTTGGATGGGATGTACGAATGTATTCTATGTGCTTGCTGTAGCACATCATGTCCTAGCTACTGGTGGAATCCTGAGTCTTATCTTGGTCC-GCTGCACTCCTGCCATGCCAACCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGATCATGGATAGCCGTGATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E213290" ref_strand="+" ref_description="SGN-E213290 [cLEC-71-C16]">
      <seq>cattttctctgaaaaacaagagagtgacttttatgtatatgtaatacgaagatgaagagctgtaatatcaatggctactggtttaatccgacgagctatttatagggttcagtcatcttcgccggcggcgaggctacttgttgcccgagctcacgcttcggacaccaaatcccagcaggtccaacctcaagtcgtttcaaatttaccgatggaatccagataacccagggaaacccgagctccaagaatacaaaattgatctgaaggaatgtggccctatggtcttagacgccctaatcaaaatcaagaatgaagttgacccttcaccaaccttcagaagatcttgcagagaagggatctgtgggtcctgtgccatgaacatcgacggctgtaatggactcgcttgtttgacaaagatctcatcggattctgtatcgacgattacgccactgccacatatgtttgtgattaaggatttggtagtggatatgactaatttttataatcagtataagtctattgagccttggctgaagagaaaacacctgcgccaacgcctggaaaggagatacctcagagcaagagcgataaggctaagttggatgggatgtacgagtgtattctctgtgcttgntgtagtacatcatgccctagctactggtggaatcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="141221" stop="139950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140921" g_stop="140250" g_length="672"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="671" r_length="671" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E213290" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213290" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140921" e_stop="140250"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTCTCTGAAAAACAAGAGAGTGACTTTTATGTATATGTAATACGAAGATGAAGAGCTGTAATATCAATGGCTACTGGTTTAATCCGACGAGCTATTTATAGGGTTCAGTCATCTTCGCCGGCGGCGAGGCTACTTGTTGCCCGAGCTCACGCTTCGGACACCAAATCCCAGCAGGTCCAACCTCAAGTCGTTTCAAATTTACCGATGGAATCCAGATAACCCAGGGAAACCCGAGCTCCAAGAATACAAAATTGATCTGAAGGAATGTGGCCCTATGGTCTTAGACGCCCTAATCAAAATCAAGAATGAAGTTGACCCTTCACCAACCTTCAGAAGATCTTGCAGAGAAGGGATCTGTGGGTCCTGTGCCATGAACATCGACGGCTGTAATGGACTCGCTTGTTTGACAAAGATCTCATCGGATTCTGTATCGACGATTACGCCACTGCCACATATGTTTGTGATTAAGGATTTGGTAGTGGATATGACTAATTTTTATAATCAGTATAAGTCTATTGAGCCTTGGCTGAAGAGAAAAACACCTGCGCCAACGCCTGGAAAGGAGATACCTCAGAGCAAGAGCGATAAGGCTAAGTTGGATGGGATGTACGAGTGTATTCTCTGTGCTTGTTGTAGTACATCATGCCCTAGCTACTGGTGGAATCCTG</genome_strand>
        <mrna_strand>CATTTTCTCTGAAAAACAAGAGAGTGACTTTTATGTATATGTAATACGAAGATGAAGAGCTGTAATATCAATGGCTACTGGTTTAATCCGACGAGCTATTTATAGGGTTCAGTCATCTTCGCCGGCGGCGAGGCTACTTGTTGCCCGAGCTCACGCTTCGGACACCAAATCCCAGCAGGTCCAACCTCAAGTCGTTTCAAATTTACCGATGGAATCCAGATAACCCAGGGAAACCCGAGCTCCAAGAATACAAAATTGATCTGAAGGAATGTGGCCCTATGGTCTTAGACGCCCTAATCAAAATCAAGAATGAAGTTGACCCTTCACCAACCTTCAGAAGATCTTGCAGAGAAGGGATCTGTGGGTCCTGTGCCATGAACATCGACGGCTGTAATGGACTCGCTTGTTTGACAAAGATCTCATCGGATTCTGTATCGACGATTACGCCACTGCCACATATGTTTGTGATTAAGGATTTGGTAGTGGATATGACTAATTTTTATAATCAGTATAAGTCTATTGAGCCTTGGCTGAAGAG-AAAACACCTGCGCCAACGCCTGGAAAGGAGATACCTCAGAGCAAGAGCGATAAGGCTAAGTTGGATGGGATGTACGAGTGTATTCTCTGTGCTTGNTGTAGTACATCATGCCCTAGCTACTGGTGGAATCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E240649" ref_strand="+" ref_description="SGN-E240649 [cLED-21-P12]">
      <seq>tcaaatcatttcaaatttaccgatggactccagacaacccagggaaacctgagctcaaagaatacaaaatcgatctgaaggaatgcggacctatggttttagatgcgctaatcaaaatcaagaatgaaattgaccctacacttaccttcaggagatcctgtagagaagggatctgtggttcatgtgctatgaacatcgacggatgtaatggactcgcttgtttgaccaagatctcgtcggattctgaatcgacgattacgccgttgccacatatgtttgtcattaaggatctggtggtggatatgactaatttctataatcagtacaagtctattgagccttggcttaagaggaagacacctgcaccaacgcctgtgaaggagataccacagagcaagagcgatagggctaagttggatgggatgtacgaatgtattctatgtgcttgctgtagcacatcatgtcctagctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="141035" stop="139962"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140735" g_stop="140262" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="474" r_length="474" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E240649" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240649" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140735" e_stop="140262"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGTCGTTTCAAATTTACCGATGGAATCCAGATAACCCAGGGAAACCCGAGCTCCAAGAATACAAAATTGATCTGAAGGAATGTGGCCCTATGGTCTTAGACGCCCTAATCAAAATCAAGAATGAAGTTGACCCTTCACCAACCTTCAGAAGATCTTGCAGAGAAGGGATCTGTGGGTCCTGTGCCATGAACATCGACGGCTGTAATGGACTCGCTTGTTTGACAAAGATCTCATCGGATTCTGTATCGACGATTACGCCACTGCCACATATGTTTGTGATTAAGGATTTGGTAGTGGATATGACTAATTTTTATAATCAGTATAAGTCTATTGAGCCTTGGCTGAAGAGAAAAACACCTGCGCCAACGCCTGGAAAGGAGATACCTCAGAGCAAGAGCGATAAGGCTAAGTTGGATGGGATGTACGAGTGTATTCTCTGTGCTTGTTGTAGTACATCATGCCCTAGCTACT</genome_strand>
        <mrna_strand>TCAAATCATTTCAAATTTACCGATGGACTCCAGACAACCCAGGGAAACCTGAGCTCAAAGAATACAAAATCGATCTGAAGGAATGCGGACCTATGGTTTTAGATGCGCTAATCAAAATCAAGAATGAAATTGACCCTACACTTACCTTCAGGAGATCCTGTAGAGAAGGGATCTGTGGTTCATGTGCTATGAACATCGACGGATGTAATGGACTCGCTTGTTTGACCAAGATCTCGTCGGATTCTGAATCGACGATTACGCCGTTGCCACATATGTTTGTCATTAAGGATCTGGTGGTGGATATGACTAATTTCTATAATCAGTACAAGTCTATTGAGCCTTGGCTTAAGAGGAAGACACCTGCACCAACGCCTGTGAAGGAGATACCACAGAGCAAGAGCGATAGGGCTAAGTTGGATGGGATGTACGAATGTATTCTATGTGCTTGCTGTAGCACATCATGTCCTAGCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E205909" ref_strand="+" ref_description="SGN-E205909 [cLEC-20-L4]">
      <seq>ttaatccgacgagctatttatagggttcagtcatcttcggcggcngcgaggctacttgttgcccgagctgacgcttccgacaccaaatcccagcaggtccaacctcaagtcgtttcaaatttaccgatggaatccagataacccagggaaacccgagctccaagaatacaaaattgatctgaaggaatgtggccctatggtcttagacgccctaatcaaaatcaagaatgaagttgacccttcaccaaccttcagaagatcttgcagagaagggatctgtgggtcctgtgccatgaacatcgacggctgtaatggactcgcttgtttgacaaagatctcatcggattctgtatcgacgattacgccactgccacatatgtttgtgattaaggatttggtagtggatatgactaatttttataatcagtataagtctattgagccttggctgaagagaaaaacacctgcgccaacgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="141139" stop="140062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140839" g_stop="140362" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="478" r_length="478" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E205909" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140839" e_stop="140362"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATCCGACGAGCTATTTATAGGGTTCAGTCATCTTCGCCGGCGGCGAGGCTACTTGTTGCCCGAGCTCACGCTTCGGACACCAAATCCCAGCAGGTCCAACCTCAAGTCGTTTCAAATTTACCGATGGAATCCAGATAACCCAGGGAAACCCGAGCTCCAAGAATACAAAATTGATCTGAAGGAATGTGGCCCTATGGTCTTAGACGCCCTAATCAAAATCAAGAATGAAGTTGACCCTTCACCAACCTTCAGAAGATCTTGCAGAGAAGGGATCTGTGGGTCCTGTGCCATGAACATCGACGGCTGTAATGGACTCGCTTGTTTGACAAAGATCTCATCGGATTCTGTATCGACGATTACGCCACTGCCACATATGTTTGTGATTAAGGATTTGGTAGTGGATATGACTAATTTTTATAATCAGTATAAGTCTATTGAGCCTTGGCTGAAGAGAAAAACACCTGCGCCAACGCCT</genome_strand>
        <mrna_strand>TTAATCCGACGAGCTATTTATAGGGTTCAGTCATCTTCGGCGGCNGCGAGGCTACTTGTTGCCCGAGCTGACGCTTCCGACACCAAATCCCAGCAGGTCCAACCTCAAGTCGTTTCAAATTTACCGATGGAATCCAGATAACCCAGGGAAACCCGAGCTCCAAGAATACAAAATTGATCTGAAGGAATGTGGCCCTATGGTCTTAGACGCCCTAATCAAAATCAAGAATGAAGTTGACCCTTCACCAACCTTCAGAAGATCTTGCAGAGAAGGGATCTGTGGGTCCTGTGCCATGAACATCGACGGCTGTAATGGACTCGCTTGTTTGACAAAGATCTCATCGGATTCTGTATCGACGATTACGCCACTGCCACATATGTTTGTGATTAAGGATTTGGTAGTGGATATGACTAATTTTTATAATCAGTATAAGTCTATTGAGCCTTGGCTGAAGAGAAAAACACCTGCGCCAACGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E336719" ref_strand="+" ref_description="SGN-E336719 [cTOE-5-K6]">
      <seq>tttaatccgacgagctatttatagggttcagtcatcttcgccggcggcgaggctacttgttgcccgagctcacgcttcggacaccaaatcccagcaggtccaacctcaagtcgtttcaaatttaccgatggaatccagataacccagggaaacccgagctccaagaatacaaaattgatctgaaggaatgtggccctatggtcttagacgccctaatcaaaatcaagaatgaagttgacccttcaccaaccttcagaagatcttgcagagaagggatctgtgggtcctgtgccatgaacatcgacggctgtaatggactcgcttggttgacaaagatctcatcggattctgtatcgacgattacgccactgccacatatgtttgtgattaaggatttggtagtggatatgactaatttttataatcaggataagtctattgagccttggctgaagagaaaaacaccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="141140" stop="140075"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140840" g_stop="140373" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="468" r_length="468" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E336719" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336719" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140840" e_stop="140373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATCCGACGAGCTATTTATAGGGTTCAGTCATCTTCGCCGGCGGCGAGGCTACTTGTTGCCCGAGCTCACGCTTCGGACACCAAATCCCAGCAGGTCCAACCTCAAGTCGTTTCAAATTTACCGATGGAATCCAGATAACCCAGGGAAACCCGAGCTCCAAGAATACAAAATTGATCTGAAGGAATGTGGCCCTATGGTCTTAGACGCCCTAATCAAAATCAAGAATGAAGTTGACCCTTCACCAACCTTCAGAAGATCTTGCAGAGAAGGGATCTGTGGGTCCTGTGCCATGAACATCGACGGCTGTAATGGACTCGCTTGTTTGACAAAGATCTCATCGGATTCTGTATCGACGATTACGCCACTGCCACATATGTTTGTGATTAAGGATTTGGTAGTGGATATGACTAATTTTTATAATCAGTATAAGTCTATTGAGCCTTGGCTGAAGAGAAAAACACCTG</genome_strand>
        <mrna_strand>TTTAATCCGACGAGCTATTTATAGGGTTCAGTCATCTTCGCCGGCGGCGAGGCTACTTGTTGCCCGAGCTCACGCTTCGGACACCAAATCCCAGCAGGTCCAACCTCAAGTCGTTTCAAATTTACCGATGGAATCCAGATAACCCAGGGAAACCCGAGCTCCAAGAATACAAAATTGATCTGAAGGAATGTGGCCCTATGGTCTTAGACGCCCTAATCAAAATCAAGAATGAAGTTGACCCTTCACCAACCTTCAGAAGATCTTGCAGAGAAGGGATCTGTGGGTCCTGTGCCATGAACATCGACGGCTGTAATGGACTCGCTTGGTTGACAAAGATCTCATCGGATTCTGTATCGACGATTACGCCACTGCCACATATGTTTGTGATTAAGGATTTGGTAGTGGATATGACTAATTTTTATAATCAGGATAAGTCTATTGAGCCTTGGCTGAAGAGAAAAACACCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E335131" ref_strand="+" ref_description="SGN-E335131 [cTOE-1-G6]">
      <seq>ttttttttttttttcttcaaaaaaaaaaaaaatcctctttcactctacagccagcagtctaagatgttaagctcctgttttgggagctgctttggtggggacgatggtgatgatcttttatggcatatggacttgaagccacatgccacaggtgaatattctgttgctgtagttcaggccaattctttgcttgaagatcaaggtcaagtttttacaacccctagtgctacttatgtgggtgtttatgatggtcatggtggcccgcaagcttctcgcttcatcaacaacaatctcttccctcaactacaaaagctggctttggaagaaggaggattgtctgaggacgtgatcaggaaagcatttgatgctattgaggagggattcttgcgtttggtgaaacagtcttggctggatcaacctcagattgcatctgcagggtcttgttgtctatttggagcaatctcaaaagatgaattgtatgtggcaaatcttggggactccagggcagtgcttggcaggagagcagagacaggccagacgggtgattcagcagtagtagtggcagaacgtttgtcgatagatcataatgttgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="141429" stop="142990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141728" g_stop="142038" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142039" i_stop="142405" i_length="367">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142406" g_stop="142690" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="595" r_length="285" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E335131" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="141728" e_stop="142038"/>
          <exon e_start="142406" e_stop="142690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTCTTTCTTTTCTTCAAAAAAAAAAAAAAATCCTCTTTCACTCTACAGCCAGCAGTCTAAGATGTTAAGCTCCTGTTTTGGGAGCTGCTTTGGTGGGGACGATGGTGATGATCTTTTATGGCATATGGACTTGAAGCCACATGCCACAGGTGAATATTCTGTTGCTGTAGTTCAGGCCAATTCTTTGCTTGAAGATCAAGGTCAAGTTTTTACAACCCCTAGTGCTACTTATGTGGGTGTTTATGATGGTCATGGTGGCCCGCAAGCTTCTCGCTTCATCAACAACAATCTCTTCCCTCAACTACAAAGTATGTACTATTTCTTGATACTATTTTACTACTATGAAAGATTGGGTTCACTCTGTTTCTTGTCAGTGGGGTCTAATAGCAAAACTATGCTAGTGCAAATTTTCTAATTTTATATTTCTAAACCTATAATTTTTTTTGACTTCTTGATTGTTGGTTTATGTGGTGTGTTTAGTTAGTATGTTGAAATTATCATGAGATTGATCAGGGGAGGCTGGGAGAAAATTGACTTGGTCATGCGTGGAGTAGAGGAGAAAAAGGAATTGAGCTTGTTCAAATTGTAGACATGTTTAATTTTTGAATGTTTGAAATAGGTGTAATTAGAGATATCATTTTGTGTTTGATTTCCTTGTTTTTTCGATTATTATAGAGCTGGCTTTGGAAGAAGGAGGATTGTCTGAGGACGTGATCAGGAAAGCATTTGATGCTATTGAGGAGGGATTCTTGCGTTTGGTGAAACAGTCTTGGCTGGATCAACCTCAGATTGCATCTGCAGGGTCTTGTTGTCTATTTGGAGCAATCTCAAAAGATGAATTGTATGTGGCAAATCTTGGGGACTCCAGGGCAGTGCTTGGCAGGAGAGCAGAGACAGGCCAGACGGGTGATTCAGCAGTAGTAGTGGCAGAACGTTTGTCGATAGATCATAATGTTGGGG</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTCTTC-AAAAAAAAAAAAAATCCTCTTTCACTCTACAGCCAGCAGTCTAAGATGTTAAGCTCCTGTTTTGGGAGCTGCTTTGGTGGGGACGATGGTGATGATCTTTTATGGCATATGGACTTGAAGCCACATGCCACAGGTGAATATTCTGTTGCTGTAGTTCAGGCCAATTCTTTGCTTGAAGATCAAGGTCAAGTTTTTACAACCCCTAGTGCTACTTATGTGGGTGTTTATGATGGTCATGGTGGCCCGCAAGCTTCTCGCTTCATCAACAACAATCTCTTCCCTCAACTACAAA...............................................................................................................................................................................................................................................................................................................................................................................AGCTGGCTTTGGAAGAAGGAGGATTGTCTGAGGACGTGATCAGGAAAGCATTTGATGCTATTGAGGAGGGATTCTTGCGTTTGGTGAAACAGTCTTGGCTGGATCAACCTCAGATTGCATCTGCAGGGTCTTGTTGTCTATTTGGAGCAATCTCAAAAGATGAATTGTATGTGGCAAATCTTGGGGACTCCAGGGCAGTGCTTGGCAGGAGAGCAGAGACAGGCCAGACGGGTGATTCAGCAGTAGTAGTGGCAGAACGTTTGTCGATAGATCATAATGTTGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E336900" ref_strand="+" ref_description="SGN-E336900 [cTOE-5-N7]">
      <seq>ttttttttttttttcttcaaaaaaaaaaaaaatcctctttcactctacagccagcagtctaagatgttaagctcctgttttgggagctgctttggtggggacgatggtgatgatcttttatggcatatggacttgaagccacatgccacaggtgaatattctgttgctgtagttcaggccaattctttgcttgaagatcaaggtcaagtttttacaacccctagtgctacttatgtgggtgtttatgatggtcatggtggcccgcaagcttctcgcttcatcaacaacaatctcttccctcaactacaaaagctggctttggaagaaggaggattgtctgaggacgtgatcaggaaagcatttgatgctattgaggagggattctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="141429" stop="142781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141728" g_stop="142038" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142039" i_stop="142405" i_length="367">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142406" g_stop="142481" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="386" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E336900" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336900" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="141728" e_stop="142038"/>
          <exon e_start="142406" e_stop="142481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTCTTTCTTTTCTTCAAAAAAAAAAAAAAATCCTCTTTCACTCTACAGCCAGCAGTCTAAGATGTTAAGCTCCTGTTTTGGGAGCTGCTTTGGTGGGGACGATGGTGATGATCTTTTATGGCATATGGACTTGAAGCCACATGCCACAGGTGAATATTCTGTTGCTGTAGTTCAGGCCAATTCTTTGCTTGAAGATCAAGGTCAAGTTTTTACAACCCCTAGTGCTACTTATGTGGGTGTTTATGATGGTCATGGTGGCCCGCAAGCTTCTCGCTTCATCAACAACAATCTCTTCCCTCAACTACAAAGTATGTACTATTTCTTGATACTATTTTACTACTATGAAAGATTGGGTTCACTCTGTTTCTTGTCAGTGGGGTCTAATAGCAAAACTATGCTAGTGCAAATTTTCTAATTTTATATTTCTAAACCTATAATTTTTTTTGACTTCTTGATTGTTGGTTTATGTGGTGTGTTTAGTTAGTATGTTGAAATTATCATGAGATTGATCAGGGGAGGCTGGGAGAAAATTGACTTGGTCATGCGTGGAGTAGAGGAGAAAAAGGAATTGAGCTTGTTCAAATTGTAGACATGTTTAATTTTTGAATGTTTGAAATAGGTGTAATTAGAGATATCATTTTGTGTTTGATTTCCTTGTTTTTTCGATTATTATAGAGCTGGCTTTGGAAGAAGGAGGATTGTCTGAGGACGTGATCAGGAAAGCATTTGATGCTATTGAGGAGGGATTCTT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTCTTC-AAAAAAAAAAAAAATCCTCTTTCACTCTACAGCCAGCAGTCTAAGATGTTAAGCTCCTGTTTTGGGAGCTGCTTTGGTGGGGACGATGGTGATGATCTTTTATGGCATATGGACTTGAAGCCACATGCCACAGGTGAATATTCTGTTGCTGTAGTTCAGGCCAATTCTTTGCTTGAAGATCAAGGTCAAGTTTTTACAACCCCTAGTGCTACTTATGTGGGTGTTTATGATGGTCATGGTGGCCCGCAAGCTTCTCGCTTCATCAACAACAATCTCTTCCCTCAACTACAAA...............................................................................................................................................................................................................................................................................................................................................................................AGCTGGCTTTGGAAGAAGGAGGATTGTCTGAGGACGTGATCAGGAAAGCATTTGATGCTATTGAGGAGGGATTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E204684" ref_strand="+" ref_description="SGN-E204684 [cLEC-14-H3]">
      <seq>tggacttgaagccacatgccacaggtgaatattctgttgctgtagttcaggccaattctttgcttgaagatcaaggtcaagtttttacaacccctagtgctacttatgtgggtgtttatgatggtcatggtggcccgcaagcttctcgcttcatcaacaacaatctcttccctcaactacaaaagctggctttggaagaaggaggattgtctgaggacgtgatcaggaaagcatttgatgctattgaggagggattcttgcgtttggtgaaacagtcttggctggatcaacctcagattgcatctgcagggtcttgttgtctatttggagcaatctcaaaagatgaattgtatgtggcaaatcttggggactccagggcagtgcttggcaggagagcagagacaggccagacgggtgattcagcagtagtagtggcagaacgtttgtcgatagatcataatgttggggttgaggaggttaggaaggaggtagaggcactgcatccagatgattctcatgttgtggtctacgttcgaggggtttggagaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="141556" stop="143072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141856" g_stop="142038" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142039" i_stop="142405" i_length="367">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142406" g_stop="142772" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="550" r_length="367" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E204684" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="141856" e_stop="142038"/>
          <exon e_start="142406" e_stop="142772"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACTTGAAGCCACATGCCACAGGTGAATATTCTGTTGCTGTAGTTCAGGCCAATTCTTTGCTTGAAGATCAAGGTCAAGTTTTTACAACCCCTAGTGCTACTTATGTGGGTGTTTATGATGGTCATGGTGGCCCGCAAGCTTCTCGCTTCATCAACAACAATCTCTTCCCTCAACTACAAAGTATGTACTATTTCTTGATACTATTTTACTACTATGAAAGATTGGGTTCACTCTGTTTCTTGTCAGTGGGGTCTAATAGCAAAACTATGCTAGTGCAAATTTTCTAATTTTATATTTCTAAACCTATAATTTTTTTTGACTTCTTGATTGTTGGTTTATGTGGTGTGTTTAGTTAGTATGTTGAAATTATCATGAGATTGATCAGGGGAGGCTGGGAGAAAATTGACTTGGTCATGCGTGGAGTAGAGGAGAAAAAGGAATTGAGCTTGTTCAAATTGTAGACATGTTTAATTTTTGAATGTTTGAAATAGGTGTAATTAGAGATATCATTTTGTGTTTGATTTCCTTGTTTTTTCGATTATTATAGAGCTGGCTTTGGAAGAAGGAGGATTGTCTGAGGACGTGATCAGGAAAGCATTTGATGCTATTGAGGAGGGATTCTTGCGTTTGGTGAAACAGTCTTGGCTGGATCAACCTCAGATTGCATCTGCAGGGTCTTGTTGTCTATTTGGAGCAATCTCAAAAGATGAATTGTATGTGGCAAATCTTGGGGACTCCAGGGCAGTGCTTGGCAGGAGAGCAGAGACAGGCCAGACGGGTGATTCAGCAGTAGTAGTGGCAGAACGTTTGTCGATAGATCATAATGTTGGGGTTGAGGAGGTTAGGAAGGAGGTAGAGGCACTGCATCCAGATGATTCTCATGTTGTGGTCTACGTTCGAGGGGTTTGGAGAAT</genome_strand>
        <mrna_strand>TGGACTTGAAGCCACATGCCACAGGTGAATATTCTGTTGCTGTAGTTCAGGCCAATTCTTTGCTTGAAGATCAAGGTCAAGTTTTTACAACCCCTAGTGCTACTTATGTGGGTGTTTATGATGGTCATGGTGGCCCGCAAGCTTCTCGCTTCATCAACAACAATCTCTTCCCTCAACTACAAA...............................................................................................................................................................................................................................................................................................................................................................................AGCTGGCTTTGGAAGAAGGAGGATTGTCTGAGGACGTGATCAGGAAAGCATTTGATGCTATTGAGGAGGGATTCTTGCGTTTGGTGAAACAGTCTTGGCTGGATCAACCTCAGATTGCATCTGCAGGGTCTTGTTGTCTATTTGGAGCAATCTCAAAAGATGAATTGTATGTGGCAAATCTTGGGGACTCCAGGGCAGTGCTTGGCAGGAGAGCAGAGACAGGCCAGACGGGTGATTCAGCAGTAGTAGTGGCAGAACGTTTGTCGATAGATCATAATGTTGGGGTTGAGGAGGTTAGGAAGGAGGTAGAGGCACTGCATCCAGATGATTCTCATGTTGTGGTCTACGTTCGAGGGGTTTGGAGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E733260" ref_strand="+" ref_description="SGN-E733260 [LB04BF04]">
      <seq>cgcttgttgtctatttggagcaatctcaaaagatgaattgtatgtggcaaatcttggggactccagggcagtgcttggcaggagagcagagacaggccagacgggtgattcagcagtagtagtggcagaacgtttgtcgatagatcataatgttggggttgaggaggttaggaaggaggtagaggcactgcatccagatgattctcatgttgtggtctacgttcgaggggtttggagaattaagggtataattcaggtttctagatcaattggtgatgtctatctgaagaaacctgagtttaatagagatcctatgttcatacaatatggatatcctattcctttaaaaagagctgtaatgtcagcagagccctccatattgatccgaaagataagaccagaagacttatttttgatatttgcatcggatggcctatgggatcaactaaccgatgacgaagctaaggatattgttttgaagaatcctagaattggaatagcaaaacgattagtgagagctgcccttgagggtgctgcagagaagaaagaaatgagatatgaggacatcaaacgactagagaagggggaaaggcggcacgttcatgatgatatcacagttattgtgatatatttggatcaccctggaaggtcctcaaattctggaattaacattgttaagggcacgaatgtccctcttgacatatactccttgaactcgggtcattaaggagagaacatatcttatgtttccccatgaaaagtgtctaatacatgtatacattatatataccattttgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="142235" stop="145146"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142533" g_stop="142788" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142789" i_stop="144091" i_length="1303">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="144092" g_stop="144328" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="493" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="144329" i_stop="144536" i_length="208">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="144537" g_stop="144852" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="809" r_length="316" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E733260" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>809</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733260" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142533" e_stop="142788"/>
          <exon e_start="144092" e_stop="144328"/>
          <exon e_start="144537" e_stop="144852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTGTTGTCTATTTGGAGCAATCTCAAAAGATGAATTGTATGTGGCAAATCTTGGGGACTCCAGGGCAGTGCTTGGCAGGAGAGCAGAGACAGGCCAGACGGGTGATTCAGCAGTAGTAGTGGCAGAACGTTTGTCGATAGATCATAATGTTGGGGTTGAGGAGGTTAGGAAGGAGGTAGAGGCACTGCATCCAGATGATTCTCATGTTGTGGTCTACGTTCGAGGGGTTTGGAGAATTAAGGGTATAATTCAGGTATCTGTTCTCAATCCTCTTTTCTTCTGTCCTATTAATGCAGTCGACAGTTTTGATTAGACATTTAACCATTCAAGGTTATTAAATTTGTTTACTAGCCTTCATGATATTCAGTAGAATTAATACATCTTTTCAGACCTGCAGCCATGATGAATCAGACCTCCACTTGAAGAAAGCTAATTAGTCCTTTCTGAAATGCGGTTTTGTTATGACTAGGTGGCGTCTGAGAATGTTAATAGTTTCTATTCAATCTAAAGTACATATGGTGGAAGGAGAAAATAGTCAGAGCTCTTTCATTCTCAATTCTGACTTCCGTTAAGTTTACAGTGGTCCATCTGTTGTTACCTCTTAGCTGTCTAGATACGCTAATGTTCTGAAAGTAAGAAAGTTATGGAAGCTAGACAACAAAGAAGACCTAAGTCTTTTTTTTCTGATCTCTGGTTTGTCGTCACACACAAATACAAAGATTCATATTTATGTAGTTAGAAACAATTCGCCTTTCTGTTGCTCGAGCATGTTATGAAGGTGGTCCAAAATCTCCGGGAACTCATAGTTGAGGCTTCTAAATAAGTCACTTTATATATGCTAATTATGTGTGTGCACTCATAGCAAGTTGATCATACCTTTTAGACGTGGTGTATGTCAAGTCTTTCTGGGGTGCCTCTTTTGTGTGTTGGCATAAAGTATGCTTTCATCTACTTTTTCTGAGGTTATAGACCGTATGTTTAAATTTTGTCCTTTTAGCTTCTTAGCCAATCACATTATAATTTATACCCTTGTCAAAAAAAAACATGTCACTTCATATGTTGATTATGTAGATTTGTGTGTCTAGTTCTTTTGGAGAATAAACATCTTTTTATCTTCTACTTTTTAAGATTTTAGACCTTGTGTATAAGCAATTTCTCCTTTTCAATCTAGTAAAAGACACATCAGTGTCAAGATTTACAAGTTTGCACCTATGGGATTCACATCAAGGCAAAAACATTTTGTTGCATGTGAAGTAATTTTGTTTTACGCATGGACACAAAGGAATGTCCTTTCCCGTTTATCCCTTCGCTCTTAACCACTTACTAGCAATCTTTTATCTTTTGGTAACTACAATTTGTAGCAGCGGCTGCATGATACTTATCTTTCCATCTGTATCCTTCATTTTAACTTCAGCAAGGTTCCCTTGTTATATGAAAAATGCCAAATAAAGTCTGAAGCTGACTGTTTTCGTTAAAAGCTTGCAAGCAGCCAATATCAGGGAGCAATCCTATGTTTTGAGAAAATCCATCTCATATTGCCTATTTATCTGTACCAGGTTTCTAGATCAATTGGTGATGTCTATCTGAAGAAACCTGAGTTTAATAGAGATCCTATGTTCATACAATATGGATATCCTATTCCTTTAAAAAGAGCTGTAATGTCAGCAGAGCCCTCCATATTGATCCGAAAGATAAGACCAGAAGACTTATTTTTGATATTTGCATCGGATGGCCTATGGGATCAACTAACCGATGACGAAGCTAAGGATATTGTTTTGAAGAATCCTAGAATTGTGAGTATCGACCCCTCCTATTCTATCACATTCTTTAATTTTTGGAAACAGTACGTACCCTCATCCATTTTGTTATCTGTAAAGTGGATGCAGGCTCTTATGATAACTAGACTCTCCTTGAAGTAATTTTGTGATCAAACTTCTCCTTCATGTTGGGCATAATTAACTAATGAATAAGATAACTGTGTTTTCTTCCTCATTTCTCCAGGGAATAGCAAAACGATTAGTGAGAGCTGCCCTTGAGGGTGCTGCAGAGAAGAAAGAAATGAGATATGAGGACATCAAACGACTAGAGAAGGGGGAAAGGCGGCACGTTCATGATGATATCACAGTTATTGTGATATATTTGGATCACCCTGGAAGGTCCTCAAATTCTGGAATTAACATTGTTAAGGGCACGAATGTCCCTCTTGACATATACTCCTTGAACTCGGGTCATTAAGGAGAGAACATATCTTATGTTTCCCCATGAAAAGTGTCTAATACATGTATACATTATATATACCATTTTGTAAATACGTCGT</genome_strand>
        <mrna_strand>CGCTTGTTGTCTATTTGGAGCAATCTCAAAAGATGAATTGTATGTGGCAAATCTTGGGGACTCCAGGGCAGTGCTTGGCAGGAGAGCAGAGACAGGCCAGACGGGTGATTCAGCAGTAGTAGTGGCAGAACGTTTGTCGATAGATCATAATGTTGGGGTTGAGGAGGTTAGGAAGGAGGTAGAGGCACTGCATCCAGATGATTCTCATGTTGTGGTCTACGTTCGAGGGGTTTGGAGAATTAAGGGTATAATTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTAGATCAATTGGTGATGTCTATCTGAAGAAACCTGAGTTTAATAGAGATCCTATGTTCATACAATATGGATATCCTATTCCTTTAAAAAGAGCTGTAATGTCAGCAGAGCCCTCCATATTGATCCGAAAGATAAGACCAGAAGACTTATTTTTGATATTTGCATCGGATGGCCTATGGGATCAACTAACCGATGACGAAGCTAAGGATATTGTTTTGAAGAATCCTAGAATT................................................................................................................................................................................................................GGAATAGCAAAACGATTAGTGAGAGCTGCCCTTGAGGGTGCTGCAGAGAAGAAAGAAATGAGATATGAGGACATCAAACGACTAGAGAAGGGGGAAAGGCGGCACGTTCATGATGATATCACAGTTATTGTGATATATTTGGATCACCCTGGAAGGTCCTCAAATTCTGGAATTAACATTGTTAAGGGCACGAATGTCCCTCTTGACATATACTCCTTGAACTCGGGTCATTAAGGAGAGAACATATCTTATGTTTCCCCATGAAAAGTGTCTAATACATGTATACATTATATATACCATTTTGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E453674" ref_strand="+" ref_description="SGN-E453674 [cSTS-20-D8]">
      <seq>tttttgatatttgcatcggatggcctatgggatcaactaagcgatgacgaagctgtggatattgttttgaagaatcctagaagtggaatagcaaaacgattagtgagaagctgcccttgagggggctgcagagaagaaaagaaatgagatacgaggacatcaaacgactagagaagggggaaaggcggcatgttcacgatgatatcacagttattgtgatatatttggatcgccctggaaggtccacaaattctggaatgaatattgttaagggcacgaacgtccctcttgacatatactccttgaactctggtcatcagttagagaacacatcttaagtttctccatgaaaagtgtctagtacatgtatacattatatatatcattttgtaaatacgtcgtcttaaacttggagagtttctttatatacttctagataacaatcagaaggaccaaccatgtacatatacctttgatgtacatgtaccttctgntattggttttgatagaccaagctgatgacaaaactagcttgagcttttacttctgtttttgacacttctgctttaagtcccgttgtttgtaccttgntatactttcctggcaattatactacaacttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="+" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="143945" stop="145374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="144245" g_stop="144328" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="144329" i_stop="144536" i_length="208">
            <donor d_prob="0.804" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="144537" g_stop="145074" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="623" r_length="539" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="+" ref_id="SGN-E453674" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E453674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="144245" e_stop="144328"/>
          <exon e_start="144537" e_stop="145074"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGATATTTGCATCGGATGGCCTATGGGATCAACTAACCGATGACGAAGCTAAGGATATTGTTTTGAAGAATCCTAGAATTGTGAGTATCGACCCCTCCTATTCTATCACATTCTTTAATTTTTGGAAACAGTACGTACCCTCATCCATTTTGTTATCTGTAAAGTGGATGCAGGCTCTTATGATAACTAGACTCTCCTTGAAGTAATTTTGTGATCAAACTTCTCCTTCATGTTGGGCATAATTAACTAATGAATAAGATAACTGTGTTTTCTTCCTCATTTCTCCAGGGAATAGCAAAACGATTAGTGAG-AGCTGCCCTTGAGGGTGCTGCAGAGAAG-AAAGAAATGAGATATGAGGACATCAAACGACTAGAGAAGGGGGAAAGGCGGCACGTTCATGATGATATCACAGTTATTGTGATATATTTGGATCACCCTGGAAGGTCCTCAAATTCTGGAATTAACATTGTTAAGGGCACGAATGTCCCTCTTGACATATACTCCTTGAACTCGGGTCATTAAGGAGAGAACATATCTTATGTTTCCCCATGAAAAGTGTCTAATACATGTATACATTATATATACCATTTTGTAAATACGTCGTCTAAAACTTGGAGAGTTTCTTTATATACTTTTAGATAACAATCAGAAGGGCCAACCATGTACATTTACC-TTGATGTACACGTACCTTCTG-TATTGGAGTTGATAGACTAAGCTGGTGACAAAACCAGCTTGAGCTTATACTTCTTTTTTTGACACTTCTGCTTAAAGCCCTGTTTGTTTGTACCTTGTTATACTTTCCTGGCAATTATACTACAACTCTTCA</genome_strand>
        <mrna_strand>TTTTTGATATTTGCATCGGATGGCCTATGGGATCAACTAAGCGATGACGAAGCTGTGGATATTGTTTTGAAGAATCCTAGAAGT................................................................................................................................................................................................................GGAATAGCAAAACGATTAGTGAGAAGCTGCCCTTGAGGGGGCTGCAGAGAAGAAAAGAAATGAGATACGAGGACATCAAACGACTAGAGAAGGGGGAAAGGCGGCATGTTCACGATGATATCACAGTTATTGTGATATATTTGGATCGCCCTGGAAGGTCCACAAATTCTGGAATGAATATTGTTAAGGGCACGAACGTCCCTCTTGACATATACTCCTTGAACTCTGGTCATCAGTTAGAGAACACATCTTAAGTTTCTCCATGAAAAGTGTCTAGTACATGTATACATTATATATATCATTTTGTAAATACGTCGTCTTAAACTTGGAGAGTTTCTTTATATACTTCTAGATAACAATCAGAAGGACCAACCATGTACATATACCTTTGATGTACATGTACCTTCTGNTATTGGTTTTGATAGACCAAGCTGATGACAAAACTAGCTTGAGCTTTTACTTCTGTTTTTGACACTTCTGCTTTAAGTCCCG-TTGTTTGTACCTTGNTATACTTTCCTGGCAATTATACTACAA--CTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E732249" ref_strand="+" ref_description="SGN-E732249 [LB01CF10]">
      <seq>cgtttaagagggacatgctacgtacatcttccttctaatttatttgtgttaaacgagcattttaattaacacttttcttgttttttagttaaatacagaaatatttaaaagtttcattagacaaataaattgacatatcaatttatctcaccttggggaagctgatacaagaatgagtttggaaaagagatcgggacgaaaaatagaagcaacaacaccagtcatagccgataaggaatggcctaagtacatgcaacgattgatttgaagttcctccaaaatggaaattaaatcgtacgcataaccttcaagggaagaatatcgatcaaaatcgaagtaatcaggatttgtcggtccagcacccatattatcataaagtacaacacgatattcatcaacgaggtaaggaacaagctgtttccaaacagactgatcggtgccgaagccatgacccagtacgatggtcttttcgcctgaacctacaacttttacgttgtgagcttcttcaccgattcccattttttggtctgagttttttgtttcccaatttttagactttattaaggtgtggtgtggaaattggaggagacgaccagccgactttttggtacgaaggaagatggattggccggtggctgttaattttaggttcacaaatcataacattagtattgcaagagtgctaattaatggaagggtttttatggttatcaagttattgaaatactttagtaaagttactttatctgttttatgctaaaataaaagtcacacatattttttactataataaaatattaataacttctaccgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0053H21-RnoJv/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0053H21.1" temp_strand="-" temp_description="C02SLe0053H21.1  AC226516.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0053H21 sequenced_by:kribb upload_account_name:korea">
        <position start="147108" stop="145683"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146808" g_stop="145984" g_length="825"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="825" r_length="825" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0053H21.1" gen_strand="-" ref_id="SGN-E732249" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>825</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0053H21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732249" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146808" e_stop="145984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTTAAGAGGGAAATGCTACGTACATCTTCCTTCTAATTTATTTGTGTTAAACGAGCATTTTAATTAACACTTTTCTTGTTTTTTAGTTAAATACAGAAATATTTAAAAGTTTCATTAGACAAATAAATTGACATATCAATTTATCTCACCTTGGGGAAGCTGATACAAGAATGAGTTTGGAAAAGAGATCGGGACGAAAAATAGAAGCAACAACACCAGTCATAGCCGATAAGGAATGGCCTAAGTACATGCAACGATTGATTTGAAGTTCCTCCAAAATGGAAATTAAATCGTACGCATAACCTTCAAGGGAAGAATATCGATCAAAATCGAAGTAATCAGGATTTGTCGGTCCAGCACCCATATTATCATAAAGTACAACACGATATTCATCAACGAGGTAAGGAACAAGCTGTTTCCAAACAGACTGATCGGTGCCGAAGCCATGACCCAGTACGATGGTCTTTTCGCCTGAACCTACAACTTTTACGTTGTGAGCTTCTTCACCGATTCCCATTTTTTGGTCTGAGTTTTTTGTTTCCCAATTTTTAGACTTTATTAAGGTGTGGTGTGGAAATTGGAGGAGACGACCAGCCGACTTTTTGGTACGAAGGAAGATGGATTGGCCGGTGGCTGTTAATTTTAGGTTCACAAATCATAACATTAGTATTGCAAGAGTGCTAATTAATGGAAGGGTTTTTATGGTTATCAAGTTATTGAAATACTTTAGTAAAGTTACTTTATCTGTTTTATGCTAAAATAAAAGTCACACATATTTTTTACTATAATAAAATATTAATAACTTCTACCGAAAAACACTAGA</genome_strand>
        <mrna_strand>CGTTTAAGAGGGACATGCTACGTACATCTTCCTTCTAATTTATTTGTGTTAAACGAGCATTTTAATTAACACTTTTCTTGTTTTTTAGTTAAATACAGAAATATTTAAAAGTTTCATTAGACAAATAAATTGACATATCAATTTATCTCACCTTGGGGAAGCTGATACAAGAATGAGTTTGGAAAAGAGATCGGGACGAAAAATAGAAGCAACAACACCAGTCATAGCCGATAAGGAATGGCCTAAGTACATGCAACGATTGATTTGAAGTTCCTCCAAAATGGAAATTAAATCGTACGCATAACCTTCAAGGGAAGAATATCGATCAAAATCGAAGTAATCAGGATTTGTCGGTCCAGCACCCATATTATCATAAAGTACAACACGATATTCATCAACGAGGTAAGGAACAAGCTGTTTCCAAACAGACTGATCGGTGCCGAAGCCATGACCCAGTACGATGGTCTTTTCGCCTGAACCTACAACTTTTACGTTGTGAGCTTCTTCACCGATTCCCATTTTTTGGTCTGAGTTTTTTGTTTCCCAATTTTTAGACTTTATTAAGGTGTGGTGTGGAAATTGGAGGAGACGACCAGCCGACTTTTTGGTACGAAGGAAGATGGATTGGCCGGTGGCTGTTAATTTTAGGTTCACAAATCATAACATTAGTATTGCAAGAGTGCTAATTAATGGAAGGGTTTTTATGGTTATCAAGTTATTGAAATACTTTAGTAAAGTTACTTTATCTGTTTTATGCTAAAATAAAAGTCACACATATTTTTTACTATAATAAAATATTAATAACTTCTACCGAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>375</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="3088" PGL_stop="5548"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3088" e_stop="3357"/>
            <exon e_start="3506" e_stop="3649"/>
            <exon e_start="4000" e_stop="4098"/>
            <exon e_start="5180" e_stop="5256"/>
            <exon e_start="5446" e_stop="5548"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.768" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.319" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.979" e_score="1.000"/>
          <exon-only e_score="0.951"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="3088" e_stop="3357" e_length="270"/>
          </exon>
          <intron i_serial="1" don_prob="0.768" acc_prob="1.000">
            <gDNA_intron_boundary i_start="3358" i_stop="3505" i_length="148"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="3506" e_stop="3649" e_length="144"/>
          </exon>
          <intron i_serial="2" don_prob="0.319" acc_prob="0.993">
            <gDNA_intron_boundary i_start="3650" i_stop="3999" i_length="350"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="4000" e_stop="4098" e_length="99"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.976">
            <gDNA_intron_boundary i_start="4099" i_stop="5179" i_length="1081"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="5180" e_stop="5256" e_length="77"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.979">
            <gDNA_intron_boundary i_start="5257" i_stop="5445" i_length="189"/>
          </intron>
          <exon e_serial="5" e_score="0.951">
            <gDNA_exon_boundary e_start="5446" e_stop="5548" e_length="103"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3088" stop="3357"/>
              <exon start="3506" stop="3649"/>
              <exon start="4000" stop="4098"/>
              <exon start="5180" stop="5256"/>
              <exon start="5446" stop="5512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390278" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3093" stop="3357"/>
              <exon start="3506" stop="3649"/>
              <exon start="4000" stop="4098"/>
              <exon start="5180" stop="5232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3188" stop="3357"/>
              <exon start="3506" stop="3649"/>
              <exon start="4000" stop="4098"/>
              <exon start="5180" stop="5213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3196" stop="3357"/>
              <exon start="3506" stop="3649"/>
              <exon start="4000" stop="4098"/>
              <exon start="5180" stop="5256"/>
              <exon start="5446" stop="5548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448409" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3214" stop="3357"/>
              <exon start="3506" stop="3649"/>
              <exon start="4000" stop="4098"/>
              <exon start="5180" stop="5209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476917" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAGGTGAGTGAAATAGACAAGGGACCCAGGCGGTTAGTGATACTAGATCATTAGCCAGACTTTTCGGCCTTCACGTGGGAGGCTTGAAACATGAGCGCGAAATTTCGGTTGGTTTGAGAAGGCGCAAAAACAGTCCTCTATTCTTATGTCCCTTGTTTTTAACTACTACTAGGGTTTTAATCTTCTCCGGTGGCCGCCATGGAAGAAGTTCGGTCTACCACAGCTTGGGTCGCTACTCACTCCTCTCATGTCACCGTTGATTTCACAG : GCATTGAGAAGGTTGCTGAAAATATGAAGAACTCATTAACAAAAGTGGAGTGGGATTTTGAAGGGATTCACTATTTTGATAACGGGCCACTCACCGTTCAGTATTTGTTGGTCTTGGATACATTGAATTTCTGTTTCTGGCCAG : ATGAGGAGATGAGTTATGATCATCTGGCATCCGGATTAAAGGTTACTCTTGAAAGTGACAAATCTGCATTTGATGCTGATCGTCTACAGAAATATACTG : GTCCTCAATTAAGGAAAATGTTGAACTGGTCAAGACCATTGCCTTTGGAGGATGAACGAGTGCGCTTATTGCATGAG : GTTGGGCTTGAGCTTGAGAGGAGCTTTGAGGGAAAGGCATCTAAACTTGTGGAGTCCTGCGACAACTCTGCTGCAAAGCTTGTAGCTCTTATGACACGCCACT</gDNA_template>
            <first_frame> K  R  *  V  K  *  T  R  D  P  G  G  *  *  Y  *  I  I  S  Q  T  F  R  P  S  R  G  R  L  E  T  *  A  R  N  F  G  W  F  E  K  A  Q  K  Q  S  S  I  L  M  S  L  V  F  N  Y  Y  *  G  F  N  L  L  R  W  P  P  W  K  K  F  G  L  P  Q  L  G  S  L  L  T  P  L  M  S  P  L  I  S  Q  :  A  L  R  R  L  L  K  I  *  R  T  H  *  Q  K  W  S  G  I  L  K  G  F  T  I  L  I  T  G  H  S  P  F  S  I  C  W  S  W  I  H  *  I  S  V  S  G  Q  :  M  R  R  *  V  M  I  I  W  H  P  D  *  R  L  L  L  K  V  T  N  L  H  L  M  L  I  V  Y  R  N  I  L  :  V  L  N  *  G  K  C  *  T  G  Q  D  H  C  L  W  R  M  N  E  C  A  Y  C  M  R :   L  G  L  S  L  R  G  A  L  R  E  R  H  L  N  L  W  S  P  A  T  T  L  L  Q  S  L  *  L  L  *  H  A  T </first_frame>
            <second_frame>  K  G  E  *  N  R  Q  G  T  Q  A  V  S  D  T  R  S  L  A  R  L  F  G  L  H  V  G  G  L  K  H  E  R  E  I  S  V  G  L  R  R  R  K  N  S  P  L  F  L  C  P  L  F  L  T  T  T  R  V  L  I  F  S  G  G  R  H  G  R  S  S  V  Y  H  S  L  G  R  Y  S  L  L  S  C  H  R  *  F  H  R :   H  *  E  G  C  *  K  Y  E  E  L  I  N  K  S  G  V  G  F  *  R  D  S  L  F  *  *  R  A  T  H  R  S  V  F  V  G  L  G  Y  I  E  F  L  F  L  A  R :   *  G  D  E  L  *  S  S  G  I  R  I  K  G  Y  S  *  K  *  Q  I  C  I  *  C  *  S  S  T  E  I  Y  W :   S  S  I  K  E  N  V  E  L  V  K  T  I  A  F  G  G  *  T  S  A  L  I  A  *   : G  W  A  *  A  *  E  E  L  *  G  K  G  I  *  T  C  G  V  L  R  Q  L  C  C  K  A  C  S  S  Y  D  T  P   </second_frame>
            <third_frame>   K  V  S  E  I  D  K  G  P  R  R  L  V  I  L  D  H  *  P  D  F  S  A  F  T  W  E  A  *  N  M  S  A  K  F  R  L  V  *  E  G  A  K  T  V  L  Y  S  Y  V  P  C  F  *  L  L  L  G  F  *  S  S  P  V  A  A  M  E  E  V  R  S  T  T  A  W  V  A  T  H  S  S  H  V  T  V  D  F  T   : G  I  E  K  V  A  E  N  M  K  N  S  L  T  K  V  E  W  D  F  E  G  I  H  Y  F  D  N  G  P  L  T  V  Q  Y  L  L  V  L  D  T  L  N  F  C  F  W  P   : D  E  E  M  S  Y  D  H  L  A  S  G  L  K  V  T  L  E  S  D  K  S  A  F  D  A  D  R  L  Q  K  Y  T   : G  P  Q  L  R  K  M  L  N  W  S  R  P  L  P  L  E  D  E  R  V  R  L  L  H  E  :  V  G  L  E  L  E  R  S  F  E  G  K  A  S  K  L  V  E  S  C  D  N  S  A  A  K  L  V  A  L  M  T  R  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0053H21.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3270" stop="3357"/>
                    <exon start="3506" stop="3649"/>
                    <exon start="4000" stop="4098"/>
                    <exon start="5180" stop="5256"/>
                    <exon start="5446" stop="5547"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>510</number_coding_nucleotides>
                  <number_encoded_amino_acids>170</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSPVAAMEEVRSTTAWVATHSSHVTVDFTGIEKVAENMKNSLTKVEWDFEGIHYFDNGPLTVQYLLVLDTLNFCFWPDEEMSYDHLASGLKVTLESDKSAFDADRLQKYTGPQLRKMLNWSRPLPLEDERVRLLHEVGLELERSFEGKASKLVESCDNSAAKLVALMTRH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="5689" PGL_stop="25342"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5755" e_stop="5969"/>
            <exon e_start="7102" e_stop="7615"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.976" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="5755" e_stop="5969" e_length="215"/>
          </exon>
          <intron i_serial="1" don_prob="0.976" acc_prob="0.982">
            <gDNA_intron_boundary i_start="5970" i_stop="7101" i_length="1132"/>
          </intron>
          <exon e_serial="2" e_score="0.982">
            <gDNA_exon_boundary e_start="7102" e_stop="7615" e_length="514"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5755" stop="5969"/>
              <exon start="7102" stop="7615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5775" stop="5969"/>
              <exon start="7102" stop="7281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5838" stop="5969"/>
              <exon start="7102" stop="7579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390389" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGACATAAGCTCAATAACCATATTTGCTGATTATATTGTTCCAGCTGTCCTTCAGCAACTTGGAGTGCTGAGATATCGTTCTTCCCTGGATAATATTATCAAGAAAAATACTGAAATTGTCTCAGGCAGTGAGGAGGAAGTAGAACTCCGAGCCTGCTCTGTTTATGCTGTGGAGAAAATAAAGGAGTTGATCAGTAAAAAGACTGGGAAGCAG : GTGTTGAGTGTTGAACTGGATCTCTGGTTATGGGCTTTTGGCATACAATGCCCATCTCTTCAACACCATCGGACACTCTCTATCTATTATTGACTATAGTAATTAAGCTCCATTTTCATTGCAGTCTTGCATACAATTATGGTCTTGATTTTGGGATTTTGACATTTCCACGTCTAGATGTAACAGTACAGAAATTATACAGGATTATTTTCTCCTCTTGGTGGTGAATTTACTTTTTTCAAGGAGTGCAGAGGAGAGGTTGATTATCCGTTTATGCAGTACCTTGTATAATGTTGATGGGCTCAACACTCGGGCTGTTTGGTTAGAGTTATGGATGTATTCGTTTAGATAGAATTTAGTGTAGGATGAGTTATTAGTTATTCAAATATTAGTTATATAAGATTTAATTATGCACATATATTAGTCATGAAAGATTTAGTTAGATAGGTATTAGTATGTAGATCTTTTTAAAAAAATGGTAAGCTTATTCTTATTTCTTAATTTCAAAATGTTT</gDNA_template>
            <first_frame> K  T  *  A  Q  *  P  Y  L  L  I  I  L  F  Q  L  S  F  S  N  L  E  C  *  D  I  V  L  P  W  I  I  L  S  R  K  I  L  K  L  S  Q  A  V  R  R  K  *  N  S  E  P  A  L  F  M  L  W  R  K  *  R  S  *  S  V  K  R  L  G  S  R :   C  *  V  L  N  W  I  S  G  Y  G  L  L  A  Y  N  A  H  L  F  N  T  I  G  H  S  L  S  I  I  D  Y  S  N  *  A  P  F  S  L  Q  S  C  I  Q  L  W  S  *  F  W  D  F  D  I  S  T  S  R  C  N  S  T  E  I  I  Q  D  Y  F  L  L  L  V  V  N  L  L  F  S  R  S  A  E  E  R  L  I  I  R  L  C  S  T  L  Y  N  V  D  G  L  N  T  R  A  V  W  L  E  L  W  M  Y  S  F  R  *  N  L  V  *  D  E  L  L  V  I  Q  I  L  V  I  *  D  L  I  M  H  I  Y  *  S  *  K  I  *  L  D  R  Y  *  Y  V  D  L  F  K  K  M  V  S  L  F  L  F  L  N  F  K  M  F </first_frame>
            <second_frame>  R  H  K  L  N  N  H  I  C  *  L  Y  C  S  S  C  P  S  A  T  W  S  A  E  I  S  F  F  P  G  *  Y  Y  Q  E  K  Y  *  N  C  L  R  Q  *  G  G  S  R  T  P  S  L  L  C  L  C  C  G  E  N  K  G  V  D  Q  *  K  D  W  E  A   : G  V  E  C  *  T  G  S  L  V  M  G  F  W  H  T  M  P  I  S  S  T  P  S  D  T  L  Y  L  L  L  T  I  V  I  K  L  H  F  H  C  S  L  A  Y  N  Y  G  L  D  F  G  I  L  T  F  P  R  L  D  V  T  V  Q  K  L  Y  R  I  I  F  S  S  W  W  *  I  Y  F  F  Q  G  V  Q  R  R  G  *  L  S  V  Y  A  V  P  C  I  M  L  M  G  S  T  L  G  L  F  G  *  S  Y  G  C  I  R  L  D  R  I  *  C  R  M  S  Y  *  L  F  K  Y  *  L  Y  K  I  *  L  C  T  Y  I  S  H  E  R  F  S  *  I  G  I  S  M  *  I  F  L  K  K  W  *  A  Y  S  Y  F  L  I  S  K  C   </second_frame>
            <third_frame>   D  I  S  S  I  T  I  F  A  D  Y  I  V  P  A  V  L  Q  Q  L  G  V  L  R  Y  R  S  S  L  D  N  I  I  K  K  N  T  E  I  V  S  G  S  E  E  E  V  E  L  R  A  C  S  V  Y  A  V  E  K  I  K  E  L  I  S  K  K  T  G  K  Q  :  V  L  S  V  E  L  D  L  W  L  W  A  F  G  I  Q  C  P  S  L  Q  H  H  R  T  L  S  I  Y  Y  *  L  *  *  L  S  S  I  F  I  A  V  L  H  T  I  M  V  L  I  L  G  F  *  H  F  H  V  *  M  *  Q  Y  R  N  Y  T  G  L  F  S  P  L  G  G  E  F  T  F  F  K  E  C  R  G  E  V  D  Y  P  F  M  Q  Y  L  V  *  C  *  W  A  Q  H  S  G  C  L  V  R  V  M  D  V  F  V  *  I  E  F  S  V  G  *  V  I  S  Y  S  N  I  S  Y  I  R  F  N  Y  A  H  I  L  V  M  K  D  L  V  R  *  V  L  V  C  R  S  F  *  K  N  G  K  L  I  L  I  S  *  F  Q  N  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0053H21.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5757" stop="5969"/>
                    <exon start="7102" stop="7194"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DISSITIFADYIVPAVLQQLGVLRYRSSLDNIIKKNTEIVSGSEEEVELRACSVYAVEKIKELISKKTGKQVLSVELDLWLWAFGIQCPSLQHHRTLSIYY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0053H21.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7250" stop="7453"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FWDFDISTSRCNSTEIIQDYFLLLVVNLLFSRSAEERLIIRLCSTLYNVDGLNTRAVWLELWMYSFR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="21341" e_stop="21644"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="21341" e_stop="21644" e_length="304"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21341" stop="21644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294324" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTCCAGTGTTCGTATATGGAAAATATTTCTTTTAAAAGAACATTGGACATGAGATAAACTTGGTTATCTCCAGAGTTCGTACATGCAGAATATTTCTTTTAAAGAACATTGGACATAAGATTGTAGAGGAACATTGACTTTGGTTAGCTCATTCGTCTATGGTTTCTTCCATGTGTGCTTCCTACTGACTTCCATGAGCTTCTTAGAATTGTTCTTGCGGATATTTATTGCCTCTAGCTTAATCTGGTGAAAGATATTTTACTGATTGATCTACTTCAGATAACTGAACAATTTCACCAATTC</gDNA_template>
            <first_frame> S  P  V  F  V  Y  G  K  Y  F  F  *  K  N  I  G  H  E  I  N  L  V  I  S  R  V  R  T  C  R  I  F  L  L  K  N  I  G  H  K  I  V  E  E  H  *  L  W  L  A  H  S  S  M  V  S  S  M  C  A  S  Y  *  L  P  *  A  S  *  N  C  S  C  G  Y  L  L  P  L  A  *  S  G  E  R  Y  F  T  D  *  S  T  S  D  N  *  T  I  S  P  I  </first_frame>
            <second_frame>  L  Q  C  S  Y  M  E  N  I  S  F  K  R  T  L  D  M  R  *  T  W  L  S  P  E  F  V  H  A  E  Y  F  F  *  R  T  L  D  I  R  L  *  R  N  I  D  F  G  *  L  I  R  L  W  F  L  P  C  V  L  P  T  D  F  H  E  L  L  R  I  V  L  A  D  I  Y  C  L  *  L  N  L  V  K  D  I  L  L  I  D  L  L  Q  I  T  E  Q  F  H  Q  F </second_frame>
            <third_frame>   S  S  V  R  I  W  K  I  F  L  L  K  E  H  W  T  *  D  K  L  G  Y  L  Q  S  S  Y  M  Q  N  I  S  F  K  E  H  W  T  *  D  C  R  G  T  L  T  L  V  S  S  F  V  Y  G  F  F  H  V  C  F  L  L  T  S  M  S  F  L  E  L  F  L  R  I  F  I  A  S  S  L  I  W  *  K  I  F  Y  *  L  I  Y  F  R  *  L  N  N  F  T  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLe0053H21.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="16750" e_stop="16973"/>
            <exon e_start="25149" e_stop="25342"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.882" acc_prob="0.999" e_score="0.991"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="16750" e_stop="16973" e_length="224"/>
          </exon>
          <intron i_serial="1" don_prob="0.882" acc_prob="0.999">
            <gDNA_intron_boundary i_start="16974" i_stop="25148" i_length="8175"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="25149" e_stop="25342" e_length="194"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16750" stop="16973"/>
              <exon start="25149" stop="25342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238082" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTAAGGTATTCCTATTTTCCTTGACCCTTGTAATGCAGATATCAATTCCAAAGGACCATACATAAATTACTTGATTACATAGCTATGAGTTTTGACGGTGCTTTTGACATTGAGAAGCAAAGTAGATCTCGGATATATCCACTTTTTTGTTGAACCGCAACTGCCCAAGATCTTTGTATGATTCGACTTTGGAGCCTTCAAAGACCTCTGTGGTATTTAAG : AGCTTCGTGAAGCGGAGATGGAATTGGGGAGAGATCAAATAGCCCTAGCTAGATTCTCAAGCTTGGATTCACCCGAAAAGGTCGAAAAGCCCTTCTTTAAGCTTTCTTATTCGCTTTTTAGCGCATAACTTACTCTCTCACTTATATTCAAGATACATGGTATTTGTTCAAAGTTCATGATAAGTTAGAATATG</gDNA_template>
            <first_frame> F  L  R  Y  S  Y  F  P  *  P  L  *  C  R  Y  Q  F  Q  R  T  I  H  K  L  L  D  Y  I  A  M  S  F  D  G  A  F  D  I  E  K  Q  S  R  S  R  I  Y  P  L  F  C  *  T  A  T  A  Q  D  L  C  M  I  R  L  W  S  L  Q  R  P  L  W  Y  L  R :   A  S  *  S  G  D  G  I  G  E  R  S  N  S  P  S  *  I  L  K  L  G  F  T  R  K  G  R  K  A  L  L  *  A  F  L  F  A  F  *  R  I  T  Y  S  L  T  Y  I  Q  D  T  W  Y  L  F  K  V  H  D  K  L  E  Y  </first_frame>
            <second_frame>  F  *  G  I  P  I  F  L  D  P  C  N  A  D  I  N  S  K  G  P  Y  I  N  Y  L  I  T  *  L  *  V  L  T  V  L  L  T  L  R  S  K  V  D  L  G  Y  I  H  F  F  V  E  P  Q  L  P  K  I  F  V  *  F  D  F  G  A  F  K  D  L  C  G  I  *   : E  L  R  E  A  E  M  E  L  G  R  D  Q  I  A  L  A  R  F  S  S  L  D  S  P  E  K  V  E  K  P  F  F  K  L  S  Y  S  L  F  S  A  *  L  T  L  S  L  I  F  K  I  H  G  I  C  S  K  F  M  I  S  *  N  M </second_frame>
            <third_frame>   F  K  V  F  L  F  S  L  T  L  V  M  Q  I  S  I  P  K  D  H  T  *  I  T  *  L  H  S  Y  E  F  *  R  C  F  *  H  *  E  A  K  *  I  S  D  I  S  T  F  L  L  N  R  N  C  P  R  S  L  Y  D  S  T  L  E  P  S  K  T  S  V  V  F  K  :  S  F  V  K  R  R  W  N  W  G  E  I  K  *  P  *  L  D  S  Q  A  W  I  H  P  K  R  S  K  S  P  S  L  S  F  L  I  R  F  L  A  H  N  L  L  S  H  L  Y  S  R  Y  M  V  F  V  Q  S  S  *  *  V  R  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLe0053H21.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="14485" e_stop="14589"/>
            <exon e_start="14679" e_stop="14749"/>
            <exon e_start="14850" e_stop="14948"/>
            <exon e_start="15378" e_stop="15717"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.730" acc_prob="0.940" e_score="1.000"/>
          <exon-intron don_prob="0.647" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.570" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14485" e_stop="14589" e_length="105"/>
          </exon>
          <intron i_serial="1" don_prob="0.730" acc_prob="0.940">
            <gDNA_intron_boundary i_start="14590" i_stop="14678" i_length="89"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="14679" e_stop="14749" e_length="71"/>
          </exon>
          <intron i_serial="2" don_prob="0.647" acc_prob="0.000">
            <gDNA_intron_boundary i_start="14750" i_stop="14849" i_length="100"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="14850" e_stop="14948" e_length="99"/>
          </exon>
          <intron i_serial="3" don_prob="0.986" acc_prob="0.570">
            <gDNA_intron_boundary i_start="14949" i_stop="15377" i_length="429"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="15378" e_stop="15717" e_length="340"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14485" stop="14589"/>
              <exon start="14679" stop="14749"/>
              <exon start="14850" stop="14948"/>
              <exon start="15378" stop="15717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302128" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGATTCGTCTGAGTTTCCTTATCAAATTTAATGCAAACGATGGTTCATTTTAGCTCTCAGGATACATCTCAGGTCAATGTGTAGTCAACGTTTACACAGTGAAG : GTCCTTCTATATTTCTGATCCACTTATTTCCGTATATTTTCTGGACAAAGAAAACGGAAACCTAATGTTTG : TTTGAACTTAGTCTCCTAGTTTTTACTTATCAATCATTCCTGAACTGATAAGAGCATGGGGAGTCAATAGATGTACACGAGACGGGGAGTCAAAAGAAG : AGTGGTACTGGACATAGAATCTGAAGAATCTAGGATACTATACTCAATCTCACCCTGGTGTCTCGCATTTTATTGATGTTCCATTGGTTCCTGATACCACTGATAAATGCTGTCTTGGAGGGTGCCAAAGTTCTCCAACAGTTTGATAAGAAGTTAATTCCGATTGTGTCAAACACAACGCTTGCTATAATTGATCAGGTCTATTCTGGCCTTTGCATAGTCCAATATGGCCATACTCGGTTTCTCATGAATTTCCTTATAATACATTGTAGTCTATAGTATTGCATGGACTACTTTAACTATGGTTTCGTATGCTTCATGTACATCAGCAACATCAAAA</gDNA_template>
            <first_frame> R  I  R  L  S  F  L  I  K  F  N  A  N  D  G  S  F  *  L  S  G  Y  I  S  G  Q  C  V  V  N  V  Y  T  V  K  :  V  L  L  Y  F  *  S  T  Y  F  R  I  F  S  G  Q  R  K  R  K  P  N  V  C :   L  N  L  V  S  *  F  L  L  I  N  H  S  *  T  D  K  S  M  G  S  Q  *  M  Y  T  R  R  G  V  K  R  R :   V  V  L  D  I  E  S  E  E  S  R  I  L  Y  S  I  S  P  W  C  L  A  F  Y  *  C  S  I  G  S  *  Y  H  *  *  M  L  S  W  R  V  P  K  F  S  N  S  L  I  R  S  *  F  R  L  C  Q  T  Q  R  L  L  *  L  I  R  S  I  L  A  F  A  *  S  N  M  A  I  L  G  F  S  *  I  S  L  *  Y  I  V  V  Y  S  I  A  W  T  T  L  T  M  V  S  Y  A  S  C  T  S  A  T  S  K </first_frame>
            <second_frame>  G  F  V  *  V  S  L  S  N  L  M  Q  T  M  V  H  F  S  S  Q  D  T  S  Q  V  N  V  *  S  T  F  T  Q  *  R :   S  F  Y  I  S  D  P  L  I  S  V  Y  F  L  D  K  E  N  G  N  L  M  F   : V  *  T  *  S  P  S  F  Y  L  S  I  I  P  E  L  I  R  A  W  G  V  N  R  C  T  R  D  G  E  S  K  E   : E  W  Y  W  T  *  N  L  K  N  L  G  Y  Y  T  Q  S  H  P  G  V  S  H  F  I  D  V  P  L  V  P  D  T  T  D  K  C  C  L  G  G  C  Q  S  S  P  T  V  *  *  E  V  N  S  D  C  V  K  H  N  A  C  Y  N  *  S  G  L  F  W  P  L  H  S  P  I  W  P  Y  S  V  S  H  E  F  P  Y  N  T  L  *  S  I  V  L  H  G  L  L  *  L  W  F  R  M  L  H  V  H  Q  Q  H  Q   </second_frame>
            <third_frame>   D  S  S  E  F  P  Y  Q  I  *  C  K  R  W  F  I  L  A  L  R  I  H  L  R  S  M  C  S  Q  R  L  H  S  E   : G  P  S  I  F  L  I  H  L  F  P  Y  I  F  W  T  K  K  T  E  T  *  C  L  :  F  E  L  S  L  L  V  F  T  Y  Q  S  F  L  N  *  *  E  H  G  E  S  I  D  V  H  E  T  G  S  Q  K  K  :  S  G  T  G  H  R  I  *  R  I  *  D  T  I  L  N  L  T  L  V  S  R  I  L  L  M  F  H  W  F  L  I  P  L  I  N  A  V  L  E  G  A  K  V  L  Q  Q  F  D  K  K  L  I  P  I  V  S  N  T  T  L  A  I  I  D  Q  V  Y  S  G  L  C  I  V  Q  Y  G  H  T  R  F  L  M  N  F  L  I  I  H  C  S  L  *  Y  C  M  D  Y  F  N  Y  G  F  V  C  F  M  Y  I  S  N  I  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0053H21.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15411" stop="15656"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DTILNLTLVSRILLMFHWFLIPLINAVLEGAKVLQQFDKKLIPIVSNTTLAIIDQVYSGLCIVQYGHTRFLMNFLIIHCSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="5689" e_stop="5969"/>
            <exon e_start="7102" e_stop="7199"/>
            <exon e_start="19660" e_stop="19889"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.976" acc_prob="0.982" e_score="0.975"/>
          <exon-intron don_prob="0.852" acc_prob="0.000" e_score="0.980"/>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="5689" e_stop="5969" e_length="281"/>
          </exon>
          <intron i_serial="1" don_prob="0.976" acc_prob="0.982">
            <gDNA_intron_boundary i_start="5970" i_stop="7101" i_length="1132"/>
          </intron>
          <exon e_serial="2" e_score="0.980">
            <gDNA_exon_boundary e_start="7102" e_stop="7199" e_length="98"/>
          </exon>
          <intron i_serial="2" don_prob="0.852" acc_prob="0.000">
            <gDNA_intron_boundary i_start="7200" i_stop="19659" i_length="12460"/>
          </intron>
          <exon e_serial="3" e_score="0.909">
            <gDNA_exon_boundary e_start="19660" e_stop="19889" e_length="230"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5689" stop="5969"/>
              <exon start="7102" stop="7199"/>
              <exon start="19660" stop="19889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421056" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAGAGCTCAAATTTTTGCTGCTGATTTGTGGGGTGCATTTAAGGGTCAAGGATACGGTGATTTTGAAGACATAAGCTCAATAACCATATTTGCTGATTATATTGTTCCAGCTGTCCTTCAGCAACTTGGAGTGCTGAGATATCGTTCTTCCCTGGATAATATTATCAAGAAAAATACTGAAATTGTCTCAGGCAGTGAGGAGGAAGTAGAACTCCGAGCCTGCTCTGTTTATGCTGTGGAGAAAATAAAGGAGTTGATCAGTAAAAAGACTGGGAAGCAG : GTGTTGAGTGTTGAACTGGATCTCTGGTTATGGGCTTTTGGCATACAATGCCCATCTCTTCAACACCATCGGACACTCTCTATCTATTATTGACTATA : AAATTAAGCTCCATTTCCATTGCAGTCTTGCATTCAAATGATGGTTCTGGTTTTGGGATTTTCACATTTACATGTCTAGGCGAAATATTACAGAAACTATACAGGATTATTTTCTCCTCCTAGTGGTGGATTTACTTTCTTTAAGGAGTGCAGAGGTTGAATATCAGTTATTTAACCTCTTTCAATCTCATTGAATTTCTGTAAGTTGGCCTACATACATATTTTGTTTT</gDNA_template>
            <first_frame> K  E  L  K  F  L  L  L  I  C  G  V  H  L  R  V  K  D  T  V  I  L  K  T  *  A  Q  *  P  Y  L  L  I  I  L  F  Q  L  S  F  S  N  L  E  C  *  D  I  V  L  P  W  I  I  L  S  R  K  I  L  K  L  S  Q  A  V  R  R  K  *  N  S  E  P  A  L  F  M  L  W  R  K  *  R  S  *  S  V  K  R  L  G  S  R :   C  *  V  L  N  W  I  S  G  Y  G  L  L  A  Y  N  A  H  L  F  N  T  I  G  H  S  L  S  I  I  D  Y   : K  I  K  L  H  F  H  C  S  L  A  F  K  *  W  F  W  F  W  D  F  H  I  Y  M  S  R  R  N  I  T  E  T  I  Q  D  Y  F  L  L  L  V  V  D  L  L  S  L  R  S  A  E  V  E  Y  Q  L  F  N  L  F  Q  S  H  *  I  S  V  S  W  P  T  Y  I  F  C  F </first_frame>
            <second_frame>  K  S  S  N  F  C  C  *  F  V  G  C  I  *  G  S  R  I  R  *  F  *  R  H  K  L  N  N  H  I  C  *  L  Y  C  S  S  C  P  S  A  T  W  S  A  E  I  S  F  F  P  G  *  Y  Y  Q  E  K  Y  *  N  C  L  R  Q  *  G  G  S  R  T  P  S  L  L  C  L  C  C  G  E  N  K  G  V  D  Q  *  K  D  W  E  A   : G  V  E  C  *  T  G  S  L  V  M  G  F  W  H  T  M  P  I  S  S  T  P  S  D  T  L  Y  L  L  L  T  I  :  K  L  S  S  I  S  I  A  V  L  H  S  N  D  G  S  G  F  G  I  F  T  F  T  C  L  G  E  I  L  Q  K  L  Y  R  I  I  F  S  S  *  W  W  I  Y  F  L  *  G  V  Q  R  L  N  I  S  Y  L  T  S  F  N  L  I  E  F  L  *  V  G  L  H  T  Y  F  V   </second_frame>
            <third_frame>   R  A  Q  I  F  A  A  D  L  W  G  A  F  K  G  Q  G  Y  G  D  F  E  D  I  S  S  I  T  I  F  A  D  Y  I  V  P  A  V  L  Q  Q  L  G  V  L  R  Y  R  S  S  L  D  N  I  I  K  K  N  T  E  I  V  S  G  S  E  E  E  V  E  L  R  A  C  S  V  Y  A  V  E  K  I  K  E  L  I  S  K  K  T  G  K  Q  :  V  L  S  V  E  L  D  L  W  L  W  A  F  G  I  Q  C  P  S  L  Q  H  H  R  T  L  S  I  Y  Y  *  L  * :   N  *  A  P  F  P  L  Q  S  C  I  Q  M  M  V  L  V  L  G  F  S  H  L  H  V  *  A  K  Y  Y  R  N  Y  T  G  L  F  S  P  P  S  G  G  F  T  F  F  K  E  C  R  G  *  I  S  V  I  *  P  L  S  I  S  L  N  F  C  K  L  A  Y  I  H  I  L  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0053H21.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5691" stop="5969"/>
                    <exon start="7102" stop="7194"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>369</number_coding_nucleotides>
                  <number_encoded_amino_acids>123</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RAQIFAADLWGAFKGQGYGDFEDISSITIFADYIVPAVLQQLGVLRYRSSLDNIIKKNTEIVSGSEEEVELRACSVYAVEKIKELISKKTGKQVLSVELDLWLWAFGIQCPSLQHHRTLSIYY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="24601" PGL_stop="18476"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24601" e_stop="24368"/>
            <exon e_start="24252" e_stop="24015"/>
            <exon e_start="23927" e_stop="23737"/>
            <exon e_start="23462" e_stop="23227"/>
            <exon e_start="22494" e_stop="22251"/>
            <exon e_start="22144" e_stop="22037"/>
            <exon e_start="20504" e_stop="20111"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.852" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.923" acc_prob="1.000" e_score="0.983"/>
          <exon-intron don_prob="0.934" acc_prob="0.968" e_score="0.967"/>
          <exon-intron don_prob="0.999" acc_prob="0.944" e_score="1.000"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="24601" e_stop="24368" e_length="234"/>
          </exon>
          <intron i_serial="1" don_prob="0.852" acc_prob="0.993">
            <gDNA_intron_boundary i_start="24367" i_stop="24253" i_length="115"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="24252" e_stop="24015" e_length="238"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.970">
            <gDNA_intron_boundary i_start="24014" i_stop="23928" i_length="87"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="23927" e_stop="23737" e_length="191"/>
          </exon>
          <intron i_serial="3" don_prob="0.962" acc_prob="0.997">
            <gDNA_intron_boundary i_start="23736" i_stop="23463" i_length="274"/>
          </intron>
          <exon e_serial="4" e_score="0.983">
            <gDNA_exon_boundary e_start="23462" e_stop="23227" e_length="236"/>
          </exon>
          <intron i_serial="4" don_prob="0.923" acc_prob="1.000">
            <gDNA_intron_boundary i_start="23226" i_stop="22495" i_length="732"/>
          </intron>
          <exon e_serial="5" e_score="0.967">
            <gDNA_exon_boundary e_start="22494" e_stop="22251" e_length="244"/>
          </exon>
          <intron i_serial="5" don_prob="0.934" acc_prob="0.968">
            <gDNA_intron_boundary i_start="22250" i_stop="22145" i_length="106"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="22144" e_stop="22037" e_length="108"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.944">
            <gDNA_intron_boundary i_start="22036" i_stop="20505" i_length="1532"/>
          </intron>
          <exon e_serial="7" e_score="0.984">
            <gDNA_exon_boundary e_start="20504" e_stop="20111" e_length="394"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24601" stop="24368"/>
              <exon start="24252" stop="24017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467388" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24596" stop="24368"/>
              <exon start="24252" stop="24015"/>
              <exon start="23927" stop="23785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409325" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24592" stop="24368"/>
              <exon start="24252" stop="24015"/>
              <exon start="23927" stop="23737"/>
              <exon start="23462" stop="23436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E594933" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24591" stop="24368"/>
              <exon start="24252" stop="24178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24587" stop="24368"/>
              <exon start="24252" stop="24015"/>
              <exon start="23927" stop="23737"/>
              <exon start="23462" stop="23354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24587" stop="24368"/>
              <exon start="24252" stop="24015"/>
              <exon start="23927" stop="23737"/>
              <exon start="23462" stop="23381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24587" stop="24368"/>
              <exon start="24252" stop="24015"/>
              <exon start="23927" stop="23766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333814" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24587" stop="24368"/>
              <exon start="24252" stop="24015"/>
              <exon start="23927" stop="23767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334288" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24586" stop="24368"/>
              <exon start="24252" stop="24015"/>
              <exon start="23927" stop="23737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24571" stop="24368"/>
              <exon start="24252" stop="24119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472219" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24570" stop="24368"/>
              <exon start="24252" stop="24015"/>
              <exon start="23927" stop="23737"/>
              <exon start="23462" stop="23269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737081" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24236" stop="24015"/>
              <exon start="23927" stop="23737"/>
              <exon start="23462" stop="23287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24169" stop="24015"/>
              <exon start="23927" stop="23737"/>
              <exon start="23462" stop="23423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23831" stop="23737"/>
              <exon start="23462" stop="23227"/>
              <exon start="22494" stop="22297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557440" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23442" stop="23227"/>
              <exon start="22494" stop="22377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23275" stop="23227"/>
              <exon start="22494" stop="22251"/>
              <exon start="22144" stop="22037"/>
              <exon start="20504" stop="20169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421360" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22325" stop="22251"/>
              <exon start="22144" stop="22037"/>
              <exon start="20504" stop="20111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412753" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22257" stop="22251"/>
              <exon start="22144" stop="22037"/>
              <exon start="20504" stop="20139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22256" stop="22251"/>
              <exon start="22144" stop="22037"/>
              <exon start="20504" stop="20138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22256" stop="22251"/>
              <exon start="22144" stop="22037"/>
              <exon start="20504" stop="20138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373479" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAACACTAAGTCACCATGGCTCCTCCAACTCCAAGACTAGTAATCCCCATAGACCTAAAGAAAAAGCCATGGCAACAAAAGTTGCCACTCCACAACCGTTGGCACCCAGAGATACCTCCTGTAACAGAGATTAAAACAGGGGAGATGTTCCGAATTGAGATGGTTGATTGGACAGCAGGCTCTATCCAAGATAATAACTCTGCAATTGATGTAAAAACCGTTGATCTATCCACT : GTGCATTATCTCAGTGGGCCAATACGAGTCGTTGACACAGATGGAAATCCTGCTGAACCAGGTGATCTCCTTGCTGTTGAAATATGCAACTTAGGGCCTCTCCCTGGAGATGAATGGGGTTTTACAGCAATATTCGACAGAGAGAACGGTGGAGGATTTCTAACAGACCATTTTCCCCGTGCAACTAAAGCTATTTGGTATTTCGAAGGCATATATGCCTACTCACCTCATATACCAG : GTGTAAGATTTCCTGGTTTAATTCATCCTGGAATAATTGGAACAGCGCCTTCAAAAGAACTACTCAATATATGGAATGAGAGGGAAAGAAAGCTCGAAGAAACAGGTCCCCGATCTCTCAAATTATGTGAGGTCTTGCATTCTAGACCATTGGCTAACCTACCTTCAACAAAAGGGTGCATTCTTGGCAAG : ATTCAAGATGGAACTCCTGAGTGGATTAGAATTGCCAACGAGGCTGCAAGAACAATACCTGGACGTGAAAATGGAGGAAACTGTGACATCAAAAATCTCAGCAGAGGTTCAAAAATATACCTTCCAGTATTTGTAGAAGGAGCAAACCTCAGTACTGGTGATATGCATTTTTCTCAAGGTGACGGTGAAGTATCATTTTGTGGGGCAATTGAGATGAGTGGCTTCCTAGAGCTCAA : GTGTGAGATTATAAGAAACGGAATGAAAGAATATCTCACTCCAATGGGACCCACATCACTACATGTGAACCCAATTTTTGAGATAGGACCCATGGAGCCAAGATTCTCGGAGTGGTTGGTGTTTGAGGGCATCAGTGTAGATGAAAGTGGACAACAACACTATCTTGATGCCAGTGTTGCATACAAGCGTGCAGTACTAAATGCAATTGATTACCTCTCAAAATTTGGCTACTCAAAGGAACAG : GTTTATCTTTTACTTTCGTGCTGTCCATGCGAAGGAAGGATTTCAGGAATTGTTGATGCCCCCAATGCTGTTGCCACCCTTGCCATCCCAACAGCTATTTTTGACCAG : GATATTCGCCCAAAGGTCAATAAAGTGCCCCTTGGGCCAAGGCTTATAAGGAATCCAGGAATTCCACAATGTACTTATGATGGAAACCTGCCAATCACCAAAAATCCTTTGCTCCATCAACAAGGGAGCAGCTGCAACATGGATGCTAGCTCTTGAGCATGGTATATGCATGTACAGCTACTGCTGGAATTGTATGACCAAGTTGAAAGAAGCAAAGGTGAGATGCATGAAGCCTAACTAGACCTTCTTAACATCTAAAGATGTAGACATGTTCTTGAAAATGTAATAGCTCGGTATCACCAGTGAGACCATAAATAATTTTTAAATCGGAACATGGTAAACTTCATACTTGGACTAATCATCCTAATGTTGCTGCCTCTCGTGAATTTTCAGA</gDNA_template>
            <first_frame> E  H  *  V  T  M  A  P  P  T  P  R  L  V  I  P  I  D  L  K  K  K  P  W  Q  Q  K  L  P  L  H  N  R  W  H  P  E  I  P  P  V  T  E  I  K  T  G  E  M  F  R  I  E  M  V  D  W  T  A  G  S  I  Q  D  N  N  S  A  I  D  V  K  T  V  D  L  S  T  :  V  H  Y  L  S  G  P  I  R  V  V  D  T  D  G  N  P  A  E  P  G  D  L  L  A  V  E  I  C  N  L  G  P  L  P  G  D  E  W  G  F  T  A  I  F  D  R  E  N  G  G  G  F  L  T  D  H  F  P  R  A  T  K  A  I  W  Y  F  E  G  I  Y  A  Y  S  P  H  I  P   : G  V  R  F  P  G  L  I  H  P  G  I  I  G  T  A  P  S  K  E  L  L  N  I  W  N  E  R  E  R  K  L  E  E  T  G  P  R  S  L  K  L  C  E  V  L  H  S  R  P  L  A  N  L  P  S  T  K  G  C  I  L  G  K  :  I  Q  D  G  T  P  E  W  I  R  I  A  N  E  A  A  R  T  I  P  G  R  E  N  G  G  N  C  D  I  K  N  L  S  R  G  S  K  I  Y  L  P  V  F  V  E  G  A  N  L  S  T  G  D  M  H  F  S  Q  G  D  G  E  V  S  F  C  G  A  I  E  M  S  G  F  L  E  L  K :   C  E  I  I  R  N  G  M  K  E  Y  L  T  P  M  G  P  T  S  L  H  V  N  P  I  F  E  I  G  P  M  E  P  R  F  S  E  W  L  V  F  E  G  I  S  V  D  E  S  G  Q  Q  H  Y  L  D  A  S  V  A  Y  K  R  A  V  L  N  A  I  D  Y  L  S  K  F  G  Y  S  K  E  Q  :  V  Y  L  L  L  S  C  C  P  C  E  G  R  I  S  G  I  V  D  A  P  N  A  V  A  T  L  A  I  P  T  A  I  F  D  Q  :  D  I  R  P  K  V  N  K  V  P  L  G  P  R  L  I  R  N  P  G  I  P  Q  C  T  Y  D  G  N  L  P  I  T  K  N  P  L  L  H  Q  Q  G  S  S  C  N  M  D  A  S  S  *  A  W  Y  M  H  V  Q  L  L  L  E  L  Y  D  Q  V  E  R  S  K  G  E  M  H  E  A  *  L  D  L  L  N  I  *  R  C  R  H  V  L  E  N  V  I  A  R  Y  H  Q  *  D  H  K  *  F  L  N  R  N  M  V  N  F  I  L  G  L  I  I  L  M  L  L  P  L  V  N  F  Q  </first_frame>
            <second_frame>  N  T  K  S  P  W  L  L  Q  L  Q  D  *  *  S  P  *  T  *  R  K  S  H  G  N  K  S  C  H  S  T  T  V  G  T  Q  R  Y  L  L  *  Q  R  L  K  Q  G  R  C  S  E  L  R  W  L  I  G  Q  Q  A  L  S  K  I  I  T  L  Q  L  M  *  K  P  L  I  Y  P  L :   C  I  I  S  V  G  Q  Y  E  S  L  T  Q  M  E  I  L  L  N  Q  V  I  S  L  L  L  K  Y  A  T  *  G  L  S  L  E  M  N  G  V  L  Q  Q  Y  S  T  E  R  T  V  E  D  F  *  Q  T  I  F  P  V  Q  L  K  L  F  G  I  S  K  A  Y  M  P  T  H  L  I  Y  Q  :  V  *  D  F  L  V  *  F  I  L  E  *  L  E  Q  R  L  Q  K  N  Y  S  I  Y  G  M  R  G  K  E  S  S  K  K  Q  V  P  D  L  S  N  Y  V  R  S  C  I  L  D  H  W  L  T  Y  L  Q  Q  K  G  A  F  L  A  R :   F  K  M  E  L  L  S  G  L  E  L  P  T  R  L  Q  E  Q  Y  L  D  V  K  M  E  E  T  V  T  S  K  I  S  A  E  V  Q  K  Y  T  F  Q  Y  L  *  K  E  Q  T  S  V  L  V  I  C  I  F  L  K  V  T  V  K  Y  H  F  V  G  Q  L  R  *  V  A  S  *  S  S   : S  V  R  L  *  E  T  E  *  K  N  I  S  L  Q  W  D  P  H  H  Y  M  *  T  Q  F  L  R  *  D  P  W  S  Q  D  S  R  S  G  W  C  L  R  A  S  V  *  M  K  V  D  N  N  T  I  L  M  P  V  L  H  T  S  V  Q  Y  *  M  Q  L  I  T  S  Q  N  L  A  T  Q  R  N  R :   F  I  F  Y  F  R  A  V  H  A  K  E  G  F  Q  E  L  L  M  P  P  M  L  L  P  P  L  P  S  Q  Q  L  F  L  T  R :   I  F  A  Q  R  S  I  K  C  P  L  G  Q  G  L  *  G  I  Q  E  F  H  N  V  L  M  M  E  T  C  Q  S  P  K  I  L  C  S  I  N  K  G  A  A  A  T  W  M  L  A  L  E  H  G  I  C  M  Y  S  Y  C  W  N  C  M  T  K  L  K  E  A  K  V  R  C  M  K  P  N  *  T  F  L  T  S  K  D  V  D  M  F  L  K  M  *  *  L  G  I  T  S  E  T  I  N  N  F  *  I  G  T  W  *  T  S  Y  L  D  *  S  S  *  C  C  C  L  S  *  I  F  R </second_frame>
            <third_frame>   T  L  S  H  H  G  S  S  N  S  K  T  S  N  P  H  R  P  K  E  K  A  M  A  T  K  V  A  T  P  Q  P  L  A  P  R  D  T  S  C  N  R  D  *  N  R  G  D  V  P  N  *  D  G  *  L  D  S  R  L  Y  P  R  *  *  L  C  N  *  C  K  N  R  *  S  I  H   : C  A  L  S  Q  W  A  N  T  S  R  *  H  R  W  K  S  C  *  T  R  *  S  P  C  C  *  N  M  Q  L  R  A  S  P  W  R  *  M  G  F  Y  S  N  I  R  Q  R  E  R  W  R  I  S  N  R  P  F  S  P  C  N  *  S  Y  L  V  F  R  R  H  I  C  L  L  T  S  Y  T  R :   C  K  I  S  W  F  N  S  S  W  N  N  W  N  S  A  F  K  R  T  T  Q  Y  M  E  *  E  G  K  K  A  R  R  N  R  S  P  I  S  Q  I  M  *  G  L  A  F  *  T  I  G  *  P  T  F  N  K  R  V  H  S  W  Q   : D  S  R  W  N  S  *  V  D  *  N  C  Q  R  G  C  K  N  N  T  W  T  *  K  W  R  K  L  *  H  Q  K  S  Q  Q  R  F  K  N  I  P  S  S  I  C  R  R  S  K  P  Q  Y  W  *  Y  A  F  F  S  R  *  R  *  S  I  I  L  W  G  N  *  D  E  W  L  P  R  A  Q  :  V  *  D  Y  K  K  R  N  E  R  I  S  H  S  N  G  T  H  I  T  T  C  E  P  N  F  *  D  R  T  H  G  A  K  I  L  G  V  V  G  V  *  G  H  Q  C  R  *  K  W  T  T  T  L  S  *  C  Q  C  C  I  Q  A  C  S  T  K  C  N  *  L  P  L  K  I  W  L  L  K  G  T   : G  L  S  F  T  F  V  L  S  M  R  R  K  D  F  R  N  C  *  C  P  Q  C  C  C  H  P  C  H  P  N  S  Y  F  *  P   : G  Y  S  P  K  G  Q  *  S  A  P  W  A  K  A  Y  K  E  S  R  N  S  T  M  Y  L  *  W  K  P  A  N  H  Q  K  S  F  A  P  S  T  R  E  Q  L  Q  H  G  C  *  L  L  S  M  V  Y  A  C  T  A  T  A  G  I  V  *  P  S  *  K  K  Q  R  *  D  A  *  S  L  T  R  P  S  *  H  L  K  M  *  T  C  S  *  K  C  N  S  S  V  S  P  V  R  P  *  I  I  F  K  S  E  H  G  K  L  H  T  W  T  N  H  P  N  V  A  A  S  R  E  F  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0053H21.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24592" stop="24368"/>
                    <exon start="24252" stop="24015"/>
                    <exon start="23927" stop="23737"/>
                    <exon start="23462" stop="23227"/>
                    <exon start="22494" stop="22251"/>
                    <exon start="22144" stop="22037"/>
                    <exon start="20504" stop="20349"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1395</number_coding_nucleotides>
                  <number_encoded_amino_acids>465</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VTMAPPTPRLVIPIDLKKKPWQQKLPLHNRWHPEIPPVTEIKTGEMFRIEMVDWTAGSIQDNNSAIDVKTVDLSTVHYLSGPIRVVDTDGNPAEPGDLLAVEICNLGPLPGDEWGFTAIFDRENGGGFLTDHFPRATKAIWYFEGIYAYSPHIPGVRFPGLIHPGIIGTAPSKELLNIWNERERKLEETGPRSLKLCEVLHSRPLANLPSTKGCILGKIQDGTPEWIRIANEAARTIPGRENGGNCDIKNLSRGSKIYLPVFVEGANLSTGDMHFSQGDGEVSFCGAIEMSGFLELKCEIIRNGMKEYLTPMGPTSLHVNPIFEIGPMEPRFSEWLVFEGISVDESGQQHYLDASVAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCEGRISGIVDAPNAVATLAIPTAIFDQDIRPKVNKVPLGPRLIRNPGIPQCTYDGNLPITKNPLLHQQGSSCNMDASS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="21645" e_stop="21341"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="21645" e_stop="21341" e_length="305"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21645" stop="21341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21645" stop="21341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540982" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21645" stop="21347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21644" stop="21341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294323" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAATTGGTGAAATTGTTCAGTTATCTGAAGTAGATCAATCAGTAAAATATCTTTCACCAGATTAAGCTAGAGGCAATAAATATCCGCAAGAACAATTCTAAGAAGCTCATGGAAGTCAGTAGGAAGCACACATGGAAGAAACCATAGACGAATGAGCTAACCAAAGTCAATGTTCCTCTACAATCTTATGTCCAATGTTCTTTAAAAGAAATATTCTGCATGTACGAACTCTGGAGATAACCAAGTTTATCTCATGTCCAATGTTCTTTTAAAAGAAATATTTTCCATATACGAACACTGGAGA</gDNA_template>
            <first_frame> G  I  G  E  I  V  Q  L  S  E  V  D  Q  S  V  K  Y  L  S  P  D  *  A  R  G  N  K  Y  P  Q  E  Q  F  *  E  A  H  G  S  Q  *  E  A  H  M  E  E  T  I  D  E  *  A  N  Q  S  Q  C  S  S  T  I  L  C  P  M  F  F  K  R  N  I  L  H  V  R  T  L  E  I  T  K  F  I  S  C  P  M  F  F  *  K  K  Y  F  P  Y  T  N  T  G   </first_frame>
            <second_frame>  E  L  V  K  L  F  S  Y  L  K  *  I  N  Q  *  N  I  F  H  Q  I  K  L  E  A  I  N  I  R  K  N  N  S  K  K  L  M  E  V  S  R  K  H  T  W  K  K  P  *  T  N  E  L  T  K  V  N  V  P  L  Q  S  Y  V  Q  C  S  L  K  E  I  F  C  M  Y  E  L  W  R  *  P  S  L  S  H  V  Q  C  S  F  K  R  N  I  F  H  I  R  T  L  E  </second_frame>
            <third_frame>   N  W  *  N  C  S  V  I  *  S  R  S  I  S  K  I  S  F  T  R  L  S  *  R  Q  *  I  S  A  R  T  I  L  R  S  S  W  K  S  V  G  S  T  H  G  R  N  H  R  R  M  S  *  P  K  S  M  F  L  Y  N  L  M  S  N  V  L  *  K  K  Y  S  A  C  T  N  S  G  D  N  Q  V  Y  L  M  S  N  V  L  L  K  E  I  F  S  I  Y  E  H  W  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLe0053H21.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="20454" e_stop="20288"/>
            <exon e_start="18887" e_stop="18476"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.914" acc_prob="0.322" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="20454" e_stop="20288" e_length="167"/>
          </exon>
          <intron i_serial="1" don_prob="0.914" acc_prob="0.322">
            <gDNA_intron_boundary i_start="20287" i_stop="18888" i_length="1400"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="18887" e_stop="18476" e_length="412"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20454" stop="20288"/>
              <exon start="18887" stop="18476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235852" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATCCAGGAATTCCACAATGTACTTATGATGGAAACCTGCCAATCACCAAAAATCCTTTGCTCCATCAACAAGGGAGCAGCTGCAACATGGATGCTAGCTCTTGAGCATGGTATATGCATGTACAGCTACTGCTGGAATTGTATGACCAAGTTGAAAGAAGCAAAG : ATTAGTCTAGTTCATGAAGTCATCTATCTGCAAATTAGGAAATAATTGTTCTAGCTGAAGTATACGGATCACACTGTTGGGATGACAACTGTATAAGCTCCGAGCAGATAGCTTCTGCAGAATGATGTAGTCTCCATACTGCTCAAGTTGCTGCATGATAGAAAAGAACATTAATTAGTTGTACACCTTTTCTGTCATCATTGATTATAACACAAACAAGCACTCAAGGAAAAATTGCCTGGTATGAGCTATGTTTCTCGGACTCTTCAAAAATGTCATCGAGTGCGTGTCAGATCCTTCAAAAGTGGTGCAATTTTGGAGGAGTCCACATGGGTGCAGCAACATATTTGGAGAGTCTGAGCAACTTAGGGTATGAGCGGCACATCATGAAGACATAAACATTCTTAACATA</gDNA_template>
            <first_frame> E  S  R  N  S  T  M  Y  L  *  W  K  P  A  N  H  Q  K  S  F  A  P  S  T  R  E  Q  L  Q  H  G  C  *  L  L  S  M  V  Y  A  C  T  A  T  A  G  I  V  *  P  S  *  K  K  Q  R :   L  V  *  F  M  K  S  S  I  C  K  L  G  N  N  C  S  S  *  S  I  R  I  T  L  L  G  *  Q  L  Y  K  L  R  A  D  S  F  C  R  M  M  *  S  P  Y  C  S  S  C  C  M  I  E  K  N  I  N  *  L  Y  T  F  S  V  I  I  D  Y  N  T  N  K  H  S  R  K  N  C  L  V  *  A  M  F  L  G  L  F  K  N  V  I  E  C  V  S  D  P  S  K  V  V  Q  F  W  R  S  P  H  G  C  S  N  I  F  G  E  S  E  Q  L  R  V  *  A  A  H  H  E  D  I  N  I  L  N  I </first_frame>
            <second_frame>  N  P  G  I  P  Q  C  T  Y  D  G  N  L  P  I  T  K  N  P  L  L  H  Q  Q  G  S  S  C  N  M  D  A  S  S  *  A  W  Y  M  H  V  Q  L  L  L  E  L  Y  D  Q  V  E  R  S  K   : D  *  S  S  S  *  S  H  L  S  A  N  *  E  I  I  V  L  A  E  V  Y  G  S  H  C  W  D  D  N  C  I  S  S  E  Q  I  A  S  A  E  *  C  S  L  H  T  A  Q  V  A  A  *  *  K  R  T  L  I  S  C  T  P  F  L  S  S  L  I  I  T  Q  T  S  T  Q  G  K  I  A  W  Y  E  L  C  F  S  D  S  S  K  M  S  S  S  A  C  Q  I  L  Q  K  W  C  N  F  G  G  V  H  M  G  A  A  T  Y  L  E  S  L  S  N  L  G  Y  E  R  H  I  M  K  T  *  T  F  L  T   </second_frame>
            <third_frame>   I  Q  E  F  H  N  V  L  M  M  E  T  C  Q  S  P  K  I  L  C  S  I  N  K  G  A  A  A  T  W  M  L  A  L  E  H  G  I  C  M  Y  S  Y  C  W  N  C  M  T  K  L  K  E  A  K  :  I  S  L  V  H  E  V  I  Y  L  Q  I  R  K  *  L  F  *  L  K  Y  T  D  H  T  V  G  M  T  T  V  *  A  P  S  R  *  L  L  Q  N  D  V  V  S  I  L  L  K  L  L  H  D  R  K  E  H  *  L  V  V  H  L  F  C  H  H  *  L  *  H  K  Q  A  L  K  E  K  L  P  G  M  S  Y  V  S  R  T  L  Q  K  C  H  R  V  R  V  R  S  F  K  S  G  A  I  L  E  E  S  T  W  V  Q  Q  H  I  W  R  V  *  A  T  *  G  M  S  G  T  S  *  R  H  K  H  S  *  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0053H21.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18726" stop="18490"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRTLISCTPFLSSLIITQTSTQGKIAWYELCFSDSSKMSSSACQILQKWCNFGGVHMGAATYLESLSNLGYERHIMKT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0053H21.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20452" stop="20288"/>
                    <exon start="18887" stop="18843"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IQEFHNVLMMETCQSPKILCSINKGAAATWMLALEHGICMYSYCWNCMTKLKEAKISLVHEVIYLQIRK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="25502" PGL_stop="26510"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25502" e_stop="26510"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="25502" e_stop="26510" e_length="1009"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25502" stop="26247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25502" stop="26227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25502" stop="25976"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25763" stop="26449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E380002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25776" stop="26510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374558" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAGTTTTATCGTGTTATCTAGATTAAATTCTAGTGTGATGACTTGATTTAACCTTTGATTTATCTTTAGTGATTTAACAGAGATACATCAGTTGCATTCACCAAGAAACAGTGCAAAAAGAAGTGTTATTTTTCACAAGTATCATCATTTTGAGGACAGAAATAATGGTCCTAAAGCTAATCCTGGACCTAATTGCCTTTTGTAGAGGACCCACAAATCAAAATCTTTAGGATTTGCCAATATCTTTTGATGGCTTCACTTCACTGCAAGTGCTTGGTTTTTTGTCTGCCCACAAGGATGATGGTCCCTCAACGGCTGAACGTAGTCTTGTGGTACTCATCTCTGAGAATACTTTTCTACATATCACATATGTGGTTGCAATGTCTTCAATCAAGAAAGGAAATGACTTCACTCATGTTCCGTAGTTTGATTGGGACATCTTCACTTGAAAAATGTTACTCAAGGTACTTTCTATCCTGGTGGTAGCCAGTGTGAGAAGTGTTCCCCTCGTATCAATTAGGTGAACTTCATACAAAATCCTTGGTACTTACTATATTTGAATGCAGATGCACGAATCACACTAGTCATATTGTGCACTCAGGCCACTAGCCAGTGCTGAAGTTGAACTTTAGTGATTCCTGTTTGTGTAGATTATATCTATCCATTTGACATTAACTGTTTGAAGAAGTTGCAACAGTGTCCAGCAACTGGGGATCATTCCAAAAATAGGTGATTCCATGAACTGGGAGATTGCTATTTGATATGCTTGATGTCAATCTGCATCATCTTTTGGCCAAGGAGAAAAATTATTTAAGTAGAATTAACCTATAACTTCTCACCCAACTGCTTGAACTAAAAATAGTACGTGCCATATATGTATAATATGTACTACCTCCGTTCATGTTTAATTGTCATGATTTCTATTTTTAGAGTCAAACTATAAGAACTTTGACAAAAATTTTAAAACGTATCTTTATCATATTGATATGGAAAAAATTATAACTTATA</gDNA_template>
            <first_frame> K  V  L  S  C  Y  L  D  *  I  L  V  *  *  L  D  L  T  F  D  L  S  L  V  I  *  Q  R  Y  I  S  C  I  H  Q  E  T  V  Q  K  E  V  L  F  F  T  S  I  I  I  L  R  T  E  I  M  V  L  K  L  I  L  D  L  I  A  F  C  R  G  P  T  N  Q  N  L  *  D  L  P  I  S  F  D  G  F  T  S  L  Q  V  L  G  F  L  S  A  H  K  D  D  G  P  S  T  A  E  R  S  L  V  V  L  I  S  E  N  T  F  L  H  I  T  Y  V  V  A  M  S  S  I  K  K  G  N  D  F  T  H  V  P  *  F  D  W  D  I  F  T  *  K  M  L  L  K  V  L  S  I  L  V  V  A  S  V  R  S  V  P  L  V  S  I  R  *  T  S  Y  K  I  L  G  T  Y  Y  I  *  M  Q  M  H  E  S  H  *  S  Y  C  A  L  R  P  L  A  S  A  E  V  E  L  *  *  F  L  F  V  *  I  I  S  I  H  L  T  L  T  V  *  R  S  C  N  S  V  Q  Q  L  G  I  I  P  K  I  G  D  S  M  N  W  E  I  A  I  *  Y  A  *  C  Q  S  A  S  S  F  G  Q  G  E  K  L  F  K  *  N  *  P  I  T  S  H  P  T  A  *  T  K  N  S  T  C  H  I  C  I  I  C  T  T  S  V  H  V  *  L  S  *  F  L  F  L  E  S  N  Y  K  N  F  D  K  N  F  K  T  Y  L  Y  H  I  D  M  E  K  I  I  T  Y  </first_frame>
            <second_frame>  K  F  Y  R  V  I  *  I  K  F  *  C  D  D  L  I  *  P  L  I  Y  L  *  *  F  N  R  D  T  S  V  A  F  T  K  K  Q  C  K  K  K  C  Y  F  S  Q  V  S  S  F  *  G  Q  K  *  W  S  *  S  *  S  W  T  *  L  P  F  V  E  D  P  Q  I  K  I  F  R  I  C  Q  Y  L  L  M  A  S  L  H  C  K  C  L  V  F  C  L  P  T  R  M  M  V  P  Q  R  L  N  V  V  L  W  Y  S  S  L  R  I  L  F  Y  I  S  H  M  W  L  Q  C  L  Q  S  R  K  E  M  T  S  L  M  F  R  S  L  I  G  T  S  S  L  E  K  C  Y  S  R  Y  F  L  S  W  W  *  P  V  *  E  V  F  P  S  Y  Q  L  G  E  L  H  T  K  S  L  V  L  T  I  F  E  C  R  C  T  N  H  T  S  H  I  V  H  S  G  H  *  P  V  L  K  L  N  F  S  D  S  C  L  C  R  L  Y  L  S  I  *  H  *  L  F  E  E  V  A  T  V  S  S  N  W  G  S  F  Q  K  *  V  I  P  *  T  G  R  L  L  F  D  M  L  D  V  N  L  H  H  L  L  A  K  E  K  N  Y  L  S  R  I  N  L  *  L  L  T  Q  L  L  E  L  K  I  V  R  A  I  Y  V  *  Y  V  L  P  P  F  M  F  N  C  H  D  F  Y  F  *  S  Q  T  I  R  T  L  T  K  I  L  K  R  I  F  I  I  L  I  W  K  K  L  *  L  I </second_frame>
            <third_frame>   S  F  I  V  L  S  R  L  N  S  S  V  M  T  *  F  N  L  *  F  I  F  S  D  L  T  E  I  H  Q  L  H  S  P  R  N  S  A  K  R  S  V  I  F  H  K  Y  H  H  F  E  D  R  N  N  G  P  K  A  N  P  G  P  N  C  L  L  *  R  T  H  K  S  K  S  L  G  F  A  N  I  F  *  W  L  H  F  T  A  S  A  W  F  F  V  C  P  Q  G  *  W  S  L  N  G  *  T  *  S  C  G  T  H  L  *  E  Y  F  S  T  Y  H  I  C  G  C  N  V  F  N  Q  E  R  K  *  L  H  S  C  S  V  V  *  L  G  H  L  H  L  K  N  V  T  Q  G  T  F  Y  P  G  G  S  Q  C  E  K  C  S  P  R  I  N  *  V  N  F  I  Q  N  P  W  Y  L  L  Y  L  N  A  D  A  R  I  T  L  V  I  L  C  T  Q  A  T  S  Q  C  *  S  *  T  L  V  I  P  V  C  V  D  Y  I  Y  P  F  D  I  N  C  L  K  K  L  Q  Q  C  P  A  T  G  D  H  S  K  N  R  *  F  H  E  L  G  D  C  Y  L  I  C  L  M  S  I  C  I  I  F  W  P  R  R  K  I  I  *  V  E  L  T  Y  N  F  S  P  N  C  L  N  *  K  *  Y  V  P  Y  M  Y  N  M  Y  Y  L  R  S  C  L  I  V  M  I  S  I  F  R  V  K  L  *  E  L  *  Q  K  F  *  N  V  S  L  S  Y  *  Y  G  K  N  Y  N  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0053H21.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25695" stop="25988"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPFVEDPQIKIFRICQYLLMASLHCKCLVFCLPTRMMVPQRLNVVLWYSSLRILFYISHMWLQCLQSRKEMTSLMFRSLIGTSSLEKCYSRYFLSWW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="29560" PGL_stop="32010"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29560" e_stop="29937"/>
            <exon e_start="30016" e_stop="30728"/>
            <exon e_start="31992" e_stop="32010"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.996"/>
          <exon-only e_score="0.789"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="29560" e_stop="29937" e_length="378"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="29938" i_stop="30015" i_length="78"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="30016" e_stop="30728" e_length="713"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="30729" i_stop="31991" i_length="1263"/>
          </intron>
          <exon e_serial="3" e_score="0.789">
            <gDNA_exon_boundary e_start="31992" e_stop="32010" e_length="19"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29560" stop="29937"/>
              <exon start="30016" stop="30077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355552" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29561" stop="29937"/>
              <exon start="30016" stop="30186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29700" stop="29937"/>
              <exon start="30016" stop="30132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287927" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29856" stop="29937"/>
              <exon start="30016" stop="30542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29856" stop="29937"/>
              <exon start="30016" stop="30530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30016" stop="30728"/>
              <exon start="31992" stop="32010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733870" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACTTGAAGCCGACTCTTTCTCTCTCAAGTCTCAACCTCATTGTTTATATATAGGCACATTTCATTCTCTTTTCCTTGCTTATTACTATCCAAATTTTTATTTCTTGCTGCAAAAGTATATCGCTATTTGTTCATGTTCCGGTAACCAATTAATATATATACAAAAATATCAGTATAACAACAAAACGGAAAAATGAGTTGTAATGGTTGTCGAGTCCTTCGAAAAGGATGCAGTGATAACTGTATATTGAGACCTTGTTTGCAATGGATCGAAACACCGGAAGCACAAGGACACGCTACTGTATTTGTAGCTAAGTTTTTTGGCCGTGCTGGACTTATGTCCTTCATTTCCGCCGTTCCAGAAAACCAACGGCCTG : CTTTGTTTCAGTCCTTGTTATACGAAGCTGCTGGGAGAACAGTGAACCCAGTCAACGGTGCTGTAGGTTTATTATGGACAGGTAATTGGCACGTCTGTCAAGCGGCGGTGGAAACCGTCCTCCGCGGCGGCGCGTTACGGCCGATCTCTGAATTTCTCGGCGCGTCGGTAGAGATTGATGAGGTGTCTGATTGCACCGATGTATTTAAGCTTCAGGATCCAAGTCTAAACATGCGACCGAAGATGCAGAAACGACGTCGTTCTCCTGAGGAAACTTCAATGTTGGATCTCAGTTTAACACCAGGTTTTAATCAGAAAGTGTATAATAGTCACCCTTTGCCGGAGAATCATCGGCGACCTGGAACTCCGTCTATGAATTCAGAAGAATCTGGAACAACTACTTGTTTTGAGAGTAGTGCTGTCATTGGAGATCATCAAGGAAAAGAACCCAAATTACTCAGCTTGTTCAATTAGTTTGTATTAATATTTTCCATTTTCTTTTTTTTTTTTACTATGAGGAAGGTTTTTTCCTGGAAGTAAAATTCCGGCGAATTTTTGTAAATTATTGGCACTGGATTTCCCTCGTGTAGAAAGGAGGGGAAAGTGAAAGTTTTGCCGGTGATTCCTTCCTTGTTTTGTTATTTTCTCCTTTTTGTTTTCATAACGAGTCTTATGAATGTTGAACATTGAATAAACTGATTGTTAATCGATTTT : ATAAAAAAAGACAAACAAA</gDNA_template>
            <first_frame> K  L  E  A  D  S  F  S  L  K  S  Q  P  H  C  L  Y  I  G  T  F  H  S  L  F  L  A  Y  Y  Y  P  N  F  Y  F  L  L  Q  K  Y  I  A  I  C  S  C  S  G  N  Q  L  I  Y  I  Q  K  Y  Q  Y  N  N  K  T  E  K  *  V  V  M  V  V  E  S  F  E  K  D  A  V  I  T  V  Y  *  D  L  V  C  N  G  S  K  H  R  K  H  K  D  T  L  L  Y  L  *  L  S  F  L  A  V  L  D  L  C  P  S  F  P  P  F  Q  K  T  N  G  L  :  L  C  F  S  P  C  Y  T  K  L  L  G  E  Q  *  T  Q  S  T  V  L  *  V  Y  Y  G  Q  V  I  G  T  S  V  K  R  R  W  K  P  S  S  A  A  A  R  Y  G  R  S  L  N  F  S  A  R  R  *  R  L  M  R  C  L  I  A  P  M  Y  L  S  F  R  I  Q  V  *  T  C  D  R  R  C  R  N  D  V  V  L  L  R  K  L  Q  C  W  I  S  V  *  H  Q  V  L  I  R  K  C  I  I  V  T  L  C  R  R  I  I  G  D  L  E  L  R  L  *  I  Q  K  N  L  E  Q  L  L  V  L  R  V  V  L  S  L  E  I  I  K  E  K  N  P  N  Y  S  A  C  S  I  S  L  Y  *  Y  F  P  F  S  F  F  F  L  L  *  G  R  F  F  P  G  S  K  I  P  A  N  F  C  K  L  L  A  L  D  F  P  R  V  E  R  R  G  K  *  K  F  C  R  *  F  L  P  C  F  V  I  F  S  F  L  F  S  *  R  V  L  *  M  L  N  I  E  *  T  D  C  *  S  I  L :   *  K  K  T  N  K </first_frame>
            <second_frame>  N  L  K  P  T  L  S  L  S  S  L  N  L  I  V  Y  I  *  A  H  F  I  L  F  S  L  L  I  T  I  Q  I  F  I  S  C  C  K  S  I  S  L  F  V  H  V  P  V  T  N  *  Y  I  Y  K  N  I  S  I  T  T  K  R  K  N  E  L  *  W  L  S  S  P  S  K  R  M  Q  *  *  L  Y  I  E  T  L  F  A  M  D  R  N  T  G  S  T  R  T  R  Y  C  I  C  S  *  V  F  W  P  C  W  T  Y  V  L  H  F  R  R  S  R  K  P  T  A  C :   F  V  S  V  L  V  I  R  S  C  W  E  N  S  E  P  S  Q  R  C  C  R  F  I  M  D  R  *  L  A  R  L  S  S  G  G  G  N  R  P  P  R  R  R  V  T  A  D  L  *  I  S  R  R  V  G  R  D  *  *  G  V  *  L  H  R  C  I  *  A  S  G  S  K  S  K  H  A  T  E  D  A  E  T  T  S  F  S  *  G  N  F  N  V  G  S  Q  F  N  T  R  F  *  S  E  S  V  *  *  S  P  F  A  G  E  S  S  A  T  W  N  S  V  Y  E  F  R  R  I  W  N  N  Y  L  F  *  E  *  C  C  H  W  R  S  S  R  K  R  T  Q  I  T  Q  L  V  Q  L  V  C  I  N  I  F  H  F  L  F  F  F  Y  Y  E  E  G  F  F  L  E  V  K  F  R  R  I  F  V  N  Y  W  H  W  I  S  L  V  *  K  G  G  E  S  E  S  F  A  G  D  S  F  L  V  L  L  F  S  P  F  C  F  H  N  E  S  Y  E  C  *  T  L  N  K  L  I  V  N  R  F   : Y  K  K  R  Q  T   </second_frame>
            <third_frame>   T  *  S  R  L  F  L  S  Q  V  S  T  S  L  F  I  Y  R  H  I  S  F  S  F  P  C  L  L  L  S  K  F  L  F  L  A  A  K  V  Y  R  Y  L  F  M  F  R  *  P  I  N  I  Y  T  K  I  S  V  *  Q  Q  N  G  K  M  S  C  N  G  C  R  V  L  R  K  G  C  S  D  N  C  I  L  R  P  C  L  Q  W  I  E  T  P  E  A  Q  G  H  A  T  V  F  V  A  K  F  F  G  R  A  G  L  M  S  F  I  S  A  V  P  E  N  Q  R  P   : A  L  F  Q  S  L  L  Y  E  A  A  G  R  T  V  N  P  V  N  G  A  V  G  L  L  W  T  G  N  W  H  V  C  Q  A  A  V  E  T  V  L  R  G  G  A  L  R  P  I  S  E  F  L  G  A  S  V  E  I  D  E  V  S  D  C  T  D  V  F  K  L  Q  D  P  S  L  N  M  R  P  K  M  Q  K  R  R  R  S  P  E  E  T  S  M  L  D  L  S  L  T  P  G  F  N  Q  K  V  Y  N  S  H  P  L  P  E  N  H  R  R  P  G  T  P  S  M  N  S  E  E  S  G  T  T  T  C  F  E  S  S  A  V  I  G  D  H  Q  G  K  E  P  K  L  L  S  L  F  N  *  F  V  L  I  F  S  I  F  F  F  F  F  T  M  R  K  V  F  S  W  K  *  N  S  G  E  F  L  *  I  I  G  T  G  F  P  S  C  R  K  E  G  K  V  K  V  L  P  V  I  P  S  L  F  C  Y  F  L  L  F  V  F  I  T  S  L  M  N  V  E  H  *  I  N  *  L  L  I  D  F  :  I  K  K  D  K  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0053H21.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29739" stop="29937"/>
                    <exon start="30016" stop="30488"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>669</number_coding_nucleotides>
                  <number_encoded_amino_acids>223</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QQNGKMSCNGCRVLRKGCSDNCILRPCLQWIETPEAQGHATVFVAKFFGRAGLMSFISAVPENQRPALFQSLLYEAAGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGALRPISEFLGASVEIDEVSDCTDVFKLQDPSLNMRPKMQKRRRSPEETSMLDLSLTPGFNQKVYNSHPLPENHRRPGTPSMNSEESGTTTCFESSAVIGDHQGKEPKLLSLFN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0053H21.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29560" stop="29757"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLEADSFSLKSQPHCLYIGTFHSLFLAYYYPNFYFLLQKYIAICSCSGNQLIYIQKYQYNNKTEK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="40951" PGL_stop="37428"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40951" e_stop="40830"/>
            <exon e_start="40739" e_stop="40670"/>
            <exon e_start="40364" e_stop="39759"/>
            <exon e_start="39676" e_stop="39146"/>
            <exon e_start="38139" e_stop="37428"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.840" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="1.000" e_score="0.998"/>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="0.991"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40951" e_stop="40830" e_length="122"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="40829" i_stop="40740" i_length="90"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="40739" e_stop="40670" e_length="70"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.840">
            <gDNA_intron_boundary i_start="40669" i_stop="40365" i_length="305"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="40364" e_stop="39759" e_length="606"/>
          </exon>
          <intron i_serial="3" don_prob="0.976" acc_prob="1.000">
            <gDNA_intron_boundary i_start="39758" i_stop="39677" i_length="82"/>
          </intron>
          <exon e_serial="4" e_score="0.991">
            <gDNA_exon_boundary e_start="39676" e_stop="39146" e_length="531"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="39145" i_stop="38140" i_length="1006"/>
          </intron>
          <exon e_serial="5" e_score="0.994">
            <gDNA_exon_boundary e_start="38139" e_stop="37428" e_length="712"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40951" stop="40830"/>
              <exon start="40739" stop="40670"/>
              <exon start="40364" stop="40121"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279135" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40942" stop="40830"/>
              <exon start="40739" stop="40670"/>
              <exon start="40364" stop="39897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40940" stop="40830"/>
              <exon start="40739" stop="40670"/>
              <exon start="40364" stop="39959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321121" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40902" stop="40830"/>
              <exon start="40739" stop="40670"/>
              <exon start="40364" stop="39887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481722" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40897" stop="40830"/>
              <exon start="40739" stop="40670"/>
              <exon start="40364" stop="39784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40891" stop="40830"/>
              <exon start="40739" stop="40670"/>
              <exon start="40364" stop="39800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40891" stop="40830"/>
              <exon start="40739" stop="40670"/>
              <exon start="40364" stop="40216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40860" stop="40830"/>
              <exon start="40739" stop="40670"/>
              <exon start="40364" stop="40188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40259" stop="39857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39838" stop="39759"/>
              <exon start="39676" stop="39146"/>
              <exon start="38139" stop="38040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39495" stop="39215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330004" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39235" stop="39146"/>
              <exon start="38139" stop="37944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39209" stop="39146"/>
              <exon start="38139" stop="37428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370336" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38005" stop="37444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E434160" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38005" stop="37444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37941" stop="37437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613512" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAACAATGGATTCCTCCAATACAAAATACATTTTTTCAGAGACCTACTGCTACTGTTAACAATAATATGACCACTAAAAAGGATGAGCTTCTATTCTCTGCTATGAAGAGGACCTCTGACTG : GATTTTCTCCCAAGAGATTCCCAGTGATGTAACTGTAAATGCAGGAGGAACCTCCTTTACACTGCACAAG : TTCCCATTAGTTTCAAAGAGTGGATACATAAGAAAGTTGATCTCAGAATCTAATGAGGCTGATGTTTCTACTATCGATATCCCTGATATACCTGGTGGAGGAGAGGCATTTGAACTTGCAGCAAAGTTTTGTTATGGAATAAATTTTGAGATTAGCACAGAAAACATTGCCTTGCTGAGATGCGTGGCGGAATATCTTGAGATGACAGAAGACTATGCAGTTGCAAATTTGGTGGAAAGAACTGAGGCCTACTTTAATGAAGTAGCAATTACGAGTCTTGCGGGTGCAGTTACAATTTTGCGTTCATCAGAAAACCTTCTTCCCATTGCAGAGAAAGTAAAATTGGTGAGCCGATGCATAGACACAATTGCATATACAGCCTGCAAGGATAACCAATTCTCCACATCAGGTAGAGCAGAAGCTGGTATCAACGGATCCACGTTTTCAAACCCGAAGCCTATAGTTGACTGGTGGTCTGAAGATATAACCGTCCTTAGAATTGATTTTTTCCAAAGGGTTCTGATTGCGATGATGGCAAGGGGATTCAAGCGGTATGCACTTGGACCAATATTAATGCTCTACGCACAGAAGTCTCTTCGAGGTTTG : GAAATATTTGGAAAGGGAAGGAAAAAGATTGAACCAAAGCAAGAACATGAAAAAAGAGTTGTTTTAGAAACCATCGTTAGTCTTCTGCCAAAGGAGAAAAATGCATTGTCCGTTAGCTTTCTGTCAATGCTGCTCCGAGCTGCAATATATCTGGAGACCACGATAGCTTGCAGGCTTGACCTGGAGAAGAGGATGGCATTGCAGCTTGGACAGGCTGTATTGGATGATCTGTTAATTCCTTCAAGTTCCTTCACAGGAGACACCTTGTATGATGTTGAAACCGTGCAGCGTATTATGATGAATTTCCTTGACAATGAGGAGGGAAATCGATTAGGAGATGAAGAGTATCATGTGTCTCCTTCATTAAGTGACATGGAGCGGGTTGGAAAACTTATGGAAAATTACCTTGCTGAAATAGCCTCTGACCGTAATCTGTCTGTCACAAACTTCATTAATCTTGCTGAAGTCATCCCAGAGCAAGCAAGGATCACTGAAGATGGGATGTACAGGGCCATTGACATTTATTTGAAG : GCACATCCAGCTCTAAGCGACATAGAAAGAAAAAAGGTTTGTGGTATTATGGACTGTCAAAAACTATCTCGAGAAGCTTGTGCTCATGCTGCTCAAAATGATAGGCTCCCTGTTCAGACAGTTGTGCAAGTACTTTACTACGAGCAGCAACGTCTTCACAATGGGAGCCAGCTTGTAGCAACTGAACCTCCTGCTCTTGTTTCTTCCAAAAGGGATGATCAGTTCTCTACTAACCCTGTTTCAGACGAGGTCTCGAGTCTAAAACGAGAAAATCAGGAGCTGAAATTTGAGCTGCTGAAAATGAAGACGAGGTTGATAGAAATTGAAAAACCAAAGTCAAATACATCAGCCTCAAGCAGCCCTTTGGTCATTACTCAGCCATCTGCTGGTAAACCTCCTTTGCCAAGAAAATCTAACTTCATGAGCTCAGTATCGAAAAAGCTCGGAAGATTTATTCGAGCGGATGGACTCACGCATGGCAAAGCCCGAAATAAACCAAGTAAAGATAGACGTCATTCCATATCGTGATTTCAGCTAGCTATATTTCCATTATTGTCAAAATATGGTACATATTGGAATTTTTCAATTTAATCATGCAAGTTTGTATGGTAAAGTATATATTTTTTCGTGCTTTATCCAGAAATATTATTTATGAAAGATTGTAATATTTGATTTCTCTTATATACCATGAAAAAATATTTGCAATTCTGAC</gDNA_template>
            <first_frame> *  Q  W  I  P  P  I  Q  N  T  F  F  Q  R  P  T  A  T  V  N  N  N  M  T  T  K  K  D  E  L  L  F  S  A  M  K  R  T  S  D  W :   I  F  S  Q  E  I  P  S  D  V  T  V  N  A  G  G  T  S  F  T  L  H  K  :  F  P  L  V  S  K  S  G  Y  I  R  K  L  I  S  E  S  N  E  A  D  V  S  T  I  D  I  P  D  I  P  G  G  G  E  A  F  E  L  A  A  K  F  C  Y  G  I  N  F  E  I  S  T  E  N  I  A  L  L  R  C  V  A  E  Y  L  E  M  T  E  D  Y  A  V  A  N  L  V  E  R  T  E  A  Y  F  N  E  V  A  I  T  S  L  A  G  A  V  T  I  L  R  S  S  E  N  L  L  P  I  A  E  K  V  K  L  V  S  R  C  I  D  T  I  A  Y  T  A  C  K  D  N  Q  F  S  T  S  G  R  A  E  A  G  I  N  G  S  T  F  S  N  P  K  P  I  V  D  W  W  S  E  D  I  T  V  L  R  I  D  F  F  Q  R  V  L  I  A  M  M  A  R  G  F  K  R  Y  A  L  G  P  I  L  M  L  Y  A  Q  K  S  L  R  G  L  :  E  I  F  G  K  G  R  K  K  I  E  P  K  Q  E  H  E  K  R  V  V  L  E  T  I  V  S  L  L  P  K  E  K  N  A  L  S  V  S  F  L  S  M  L  L  R  A  A  I  Y  L  E  T  T  I  A  C  R  L  D  L  E  K  R  M  A  L  Q  L  G  Q  A  V  L  D  D  L  L  I  P  S  S  S  F  T  G  D  T  L  Y  D  V  E  T  V  Q  R  I  M  M  N  F  L  D  N  E  E  G  N  R  L  G  D  E  E  Y  H  V  S  P  S  L  S  D  M  E  R  V  G  K  L  M  E  N  Y  L  A  E  I  A  S  D  R  N  L  S  V  T  N  F  I  N  L  A  E  V  I  P  E  Q  A  R  I  T  E  D  G  M  Y  R  A  I  D  I  Y  L  K  :  A  H  P  A  L  S  D  I  E  R  K  K  V  C  G  I  M  D  C  Q  K  L  S  R  E  A  C  A  H  A  A  Q  N  D  R  L  P  V  Q  T  V  V  Q  V  L  Y  Y  E  Q  Q  R  L  H  N  G  S  Q  L  V  A  T  E  P  P  A  L  V  S  S  K  R  D  D  Q  F  S  T  N  P  V  S  D  E  V  S  S  L  K  R  E  N  Q  E  L  K  F  E  L  L  K  M  K  T  R  L  I  E  I  E  K  P  K  S  N  T  S  A  S  S  S  P  L  V  I  T  Q  P  S  A  G  K  P  P  L  P  R  K  S  N  F  M  S  S  V  S  K  K  L  G  R  F  I  R  A  D  G  L  T  H  G  K  A  R  N  K  P  S  K  D  R  R  H  S  I  S  *  F  Q  L  A  I  F  P  L  L  S  K  Y  G  T  Y  W  N  F  S  I  *  S  C  K  F  V  W  *  S  I  Y  F  F  V  L  Y  P  E  I  L  F  M  K  D  C  N  I  *  F  L  L  Y  T  M  K  K  Y  L  Q  F  *  </first_frame>
            <second_frame>  N  N  G  F  L  Q  Y  K  I  H  F  F  R  D  L  L  L  L  L  T  I  I  *  P  L  K  R  M  S  F  Y  S  L  L  *  R  G  P  L  T   : G  F  S  P  K  R  F  P  V  M  *  L  *  M  Q  E  E  P  P  L  H  C  T  S :   S  H  *  F  Q  R  V  D  T  *  E  S  *  S  Q  N  L  M  R  L  M  F  L  L  S  I  S  L  I  Y  L  V  E  E  R  H  L  N  L  Q  Q  S  F  V  M  E  *  I  L  R  L  A  Q  K  T  L  P  C  *  D  A  W  R  N  I  L  R  *  Q  K  T  M  Q  L  Q  I  W  W  K  E  L  R  P  T  L  M  K  *  Q  L  R  V  L  R  V  Q  L  Q  F  C  V  H  Q  K  T  F  F  P  L  Q  R  K  *  N  W  *  A  D  A  *  T  Q  L  H  I  Q  P  A  R  I  T  N  S  P  H  Q  V  E  Q  K  L  V  S  T  D  P  R  F  Q  T  R  S  L  *  L  T  G  G  L  K  I  *  P  S  L  E  L  I  F  S  K  G  F  *  L  R  *  W  Q  G  D  S  S  G  M  H  L  D  Q  Y  *  C  S  T  H  R  S  L  F  E  V  W :   K  Y  L  E  R  E  G  K  R  L  N  Q  S  K  N  M  K  K  E  L  F  *  K  P  S  L  V  F  C  Q  R  R  K  M  H  C  P  L  A  F  C  Q  C  C  S  E  L  Q  Y  I  W  R  P  R  *  L  A  G  L  T  W  R  R  G  W  H  C  S  L  D  R  L  Y  W  M  I  C  *  F  L  Q  V  P  S  Q  E  T  P  C  M  M  L  K  P  C  S  V  L  *  *  I  S  L  T  M  R  R  E  I  D  *  E  M  K  S  I  M  C  L  L  H  *  V  T  W  S  G  L  E  N  L  W  K  I  T  L  L  K  *  P  L  T  V  I  C  L  S  Q  T  S  L  I  L  L  K  S  S  Q  S  K  Q  G  S  L  K  M  G  C  T  G  P  L  T  F  I  *  R :   H  I  Q  L  *  A  T  *  K  E  K  R  F  V  V  L  W  T  V  K  N  Y  L  E  K  L  V  L  M  L  L  K  M  I  G  S  L  F  R  Q  L  C  K  Y  F  T  T  S  S  N  V  F  T  M  G  A  S  L  *  Q  L  N  L  L  L  L  F  L  P  K  G  M  I  S  S  L  L  T  L  F  Q  T  R  S  R  V  *  N  E  K  I  R  S  *  N  L  S  C  *  K  *  R  R  G  *  *  K  L  K  N  Q  S  Q  I  H  Q  P  Q  A  A  L  W  S  L  L  S  H  L  L  V  N  L  L  C  Q  E  N  L  T  S  *  A  Q  Y  R  K  S  S  E  D  L  F  E  R  M  D  S  R  M  A  K  P  E  I  N  Q  V  K  I  D  V  I  P  Y  R  D  F  S  *  L  Y  F  H  Y  C  Q  N  M  V  H  I  G  I  F  Q  F  N  H  A  S  L  Y  G  K  V  Y  I  F  S  C  F  I  Q  K  Y  Y  L  *  K  I  V  I  F  D  F  S  Y  I  P  *  K  N  I  C  N  S  D </second_frame>
            <third_frame>   T  M  D  S  S  N  T  K  Y  I  F  S  E  T  Y  C  Y  C  *  Q  *  Y  D  H  *  K  G  *  A  S  I  L  C  Y  E  E  D  L  *  L  :  D  F  L  P  R  D  S  Q  *  C  N  C  K  C  R  R  N  L  L  Y  T  A  Q   : V  P  I  S  F  K  E  W  I  H  K  K  V  D  L  R  I  *  *  G  *  C  F  Y  Y  R  Y  P  *  Y  T  W  W  R  R  G  I  *  T  C  S  K  V  L  L  W  N  K  F  *  D  *  H  R  K  H  C  L  A  E  M  R  G  G  I  S  *  D  D  R  R  L  C  S  C  K  F  G  G  K  N  *  G  L  L  *  *  S  S  N  Y  E  S  C  G  C  S  Y  N  F  A  F  I  R  K  P  S  S  H  C  R  E  S  K  I  G  E  P  M  H  R  H  N  C  I  Y  S  L  Q  G  *  P  I  L  H  I  R  *  S  R  S  W  Y  Q  R  I  H  V  F  K  P  E  A  Y  S  *  L  V  V  *  R  Y  N  R  P  *  N  *  F  F  P  K  G  S  D  C  D  D  G  K  G  I  Q  A  V  C  T  W  T  N  I  N  A  L  R  T  E  V  S  S  R  F   : G  N  I  W  K  G  K  E  K  D  *  T  K  A  R  T  *  K  K  S  C  F  R  N  H  R  *  S  S  A  K  G  E  K  C  I  V  R  *  L  S  V  N  A  A  P  S  C  N  I  S  G  D  H  D  S  L  Q  A  *  P  G  E  E  D  G  I  A  A  W  T  G  C  I  G  *  S  V  N  S  F  K  F  L  H  R  R  H  L  V  *  C  *  N  R  A  A  Y  Y  D  E  F  P  *  Q  *  G  G  K  S  I  R  R  *  R  V  S  C  V  S  F  I  K  *  H  G  A  G  W  K  T  Y  G  K  L  P  C  *  N  S  L  *  P  *  S  V  C  H  K  L  H  *  S  C  *  S  H  P  R  A  S  K  D  H  *  R  W  D  V  Q  G  H  *  H  L  F  E   : G  T  S  S  S  K  R  H  R  K  K  K  G  L  W  Y  Y  G  L  S  K  T  I  S  R  S  L  C  S  C  C  S  K  *  *  A  P  C  S  D  S  C  A  S  T  L  L  R  A  A  T  S  S  Q  W  E  P  A  C  S  N  *  T  S  C  S  C  F  F  Q  K  G  *  S  V  L  Y  *  P  C  F  R  R  G  L  E  S  K  T  R  K  S  G  A  E  I  *  A  A  E  N  E  D  E  V  D  R  N  *  K  T  K  V  K  Y  I  S  L  K  Q  P  F  G  H  Y  S  A  I  C  W  *  T  S  F  A  K  K  I  *  L  H  E  L  S  I  E  K  A  R  K  I  Y  S  S  G  W  T  H  A  W  Q  S  P  K  *  T  K  *  R  *  T  S  F  H  I  V  I  S  A  S  Y  I  S  I  I  V  K  I  W  Y  I  L  E  F  F  N  L  I  M  Q  V  C  M  V  K  Y  I  F  F  R  A  L  S  R  N  I  I  Y  E  R  L  *  Y  L  I  S  L  I  Y  H  E  K  I  F  A  I  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0053H21.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40948" stop="40830"/>
                    <exon start="40739" stop="40670"/>
                    <exon start="40364" stop="39759"/>
                    <exon start="39676" stop="39146"/>
                    <exon start="38139" stop="37612"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1851</number_coding_nucleotides>
                  <number_encoded_amino_acids>617</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QWIPPIQNTFFQRPTATVNNNMTTKKDELLFSAMKRTSDWIFSQEIPSDVTVNAGGTSFTLHKFPLVSKSGYIRKLISESNEADVSTIDIPDIPGGGEAFELAAKFCYGINFEISTENIALLRCVAEYLEMTEDYAVANLVERTEAYFNEVAITSLAGAVTILRSSENLLPIAEKVKLVSRCIDTIAYTACKDNQFSTSGRAEAGINGSTFSNPKPIVDWWSEDITVLRIDFFQRVLIAMMARGFKRYALGPILMLYAQKSLRGLEIFGKGRKKIEPKQEHEKRVVLETIVSLLPKEKNALSVSFLSMLLRAAIYLETTIACRLDLEKRMALQLGQAVLDDLLIPSSSFTGDTLYDVETVQRIMMNFLDNEEGNRLGDEEYHVSPSLSDMERVGKLMENYLAEIASDRNLSVTNFINLAEVIPEQARITEDGMYRAIDIYLKAHPALSDIERKKVCGIMDCQKLSREACAHAAQNDRLPVQTVVQVLYYEQQRLHNGSQLVATEPPALVSSKRDDQFSTNPVSDEVSSLKRENQELKFELLKMKTRLIEIEKPKSNTSASSSPLVITQPSAGKPPLPRKSNFMSSVSKKLGRFIRADGLTHGKARNKPSKDRRHSIS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="40446" e_stop="39857"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40446" e_stop="39857" e_length="590"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40446" stop="39857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40259" stop="39857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295195" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGCTCACACAGGTCGAGTTAAGGCCTTAGTCATGATGATTGATAAGTAGGATCAATAATGTATCAGTTGTGATCCTTGCAGTTCCCATTAGTTTCAAAGAGTGGATACATAAGAAAGTTGATCTCAGAATCTAATGAGGCTGATGTTTCTACTATCGATATCCCTGATATACCTGGTGGAGGAGAGGCATTTGAACTTGCAGCAAAGTTTTGTTATGGAATAAATTTTGAGATTAGCACAGAAAACATTGCCTTGCTGAGATGCGTGGCGGAATATCTTGAGATGACAGAAGACTATGCAGTTGCAAATTTGGTGGAAAGAACTGAGGCCTACTTTAATGAAGTAGCAATTACGAGTCTTGCGGGTGCAGTTACAATTTTGCGTTCATCAGAAAACCTTCTTCCCATTGCAGAGAAAGTAAAATTGGTGAGCCGATGCATAGACACAATTGCATATACAGCCTGCAAGGATAACCAATTCTCCACATCAGGTAGAGCAGAAGCTGGTATCAACGGATCCACGTTTTCAAACCCGAAGCCTATAGTTGACTGGTGGTCTGAAGATATAACCGTCCTTAGAATTGATTTTT</gDNA_template>
            <first_frame> E  L  T  Q  V  E  L  R  P  *  S  *  *  L  I  S  R  I  N  N  V  S  V  V  I  L  A  V  P  I  S  F  K  E  W  I  H  K  K  V  D  L  R  I  *  *  G  *  C  F  Y  Y  R  Y  P  *  Y  T  W  W  R  R  G  I  *  T  C  S  K  V  L  L  W  N  K  F  *  D  *  H  R  K  H  C  L  A  E  M  R  G  G  I  S  *  D  D  R  R  L  C  S  C  K  F  G  G  K  N  *  G  L  L  *  *  S  S  N  Y  E  S  C  G  C  S  Y  N  F  A  F  I  R  K  P  S  S  H  C  R  E  S  K  I  G  E  P  M  H  R  H  N  C  I  Y  S  L  Q  G  *  P  I  L  H  I  R  *  S  R  S  W  Y  Q  R  I  H  V  F  K  P  E  A  Y  S  *  L  V  V  *  R  Y  N  R  P  *  N  *  F   </first_frame>
            <second_frame>  S  S  H  R  S  S  *  G  L  S  H  D  D  *  *  V  G  S  I  M  Y  Q  L  *  S  L  Q  F  P  L  V  S  K  S  G  Y  I  R  K  L  I  S  E  S  N  E  A  D  V  S  T  I  D  I  P  D  I  P  G  G  G  E  A  F  E  L  A  A  K  F  C  Y  G  I  N  F  E  I  S  T  E  N  I  A  L  L  R  C  V  A  E  Y  L  E  M  T  E  D  Y  A  V  A  N  L  V  E  R  T  E  A  Y  F  N  E  V  A  I  T  S  L  A  G  A  V  T  I  L  R  S  S  E  N  L  L  P  I  A  E  K  V  K  L  V  S  R  C  I  D  T  I  A  Y  T  A  C  K  D  N  Q  F  S  T  S  G  R  A  E  A  G  I  N  G  S  T  F  S  N  P  K  P  I  V  D  W  W  S  E  D  I  T  V  L  R  I  D  F  </second_frame>
            <third_frame>   A  H  T  G  R  V  K  A  L  V  M  M  I  D  K  *  D  Q  *  C  I  S  C  D  P  C  S  S  H  *  F  Q  R  V  D  T  *  E  S  *  S  Q  N  L  M  R  L  M  F  L  L  S  I  S  L  I  Y  L  V  E  E  R  H  L  N  L  Q  Q  S  F  V  M  E  *  I  L  R  L  A  Q  K  T  L  P  C  *  D  A  W  R  N  I  L  R  *  Q  K  T  M  Q  L  Q  I  W  W  K  E  L  R  P  T  L  M  K  *  Q  L  R  V  L  R  V  Q  L  Q  F  C  V  H  Q  K  T  F  F  P  L  Q  R  K  *  N  W  *  A  D  A  *  T  Q  L  H  I  Q  P  A  R  I  T  N  S  P  H  Q  V  E  Q  K  L  V  S  T  D  P  R  F  Q  T  R  S  L  *  L  T  G  G  L  K  I  *  P  S  L  E  L  I  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0053H21.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40373" stop="39858"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>516</number_coding_nucleotides>
                  <number_encoded_amino_acids>172</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLQFPLVSKSGYIRKLISESNEADVSTIDIPDIPGGGEAFELAAKFCYGINFEISTENIALLRCVAEYLEMTEDYAVANLVERTEAYFNEVAITSLAGAVTILRSSENLLPIAEKVKLVSRCIDTIAYTACKDNQFSTSGRAEAGINGSTFSNPKPIVDWWSEDITVLRIDF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="37463" PGL_stop="38005"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37463" e_stop="38005"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.950"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.950">
            <gDNA_exon_boundary e_start="37463" e_stop="38005" e_length="543"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37463" stop="38005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E434161" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37515" stop="37881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599952" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAAATCAAATATTACAATCTTTCATAAATAATATTTCTGGATAAAGCACGAAAAAATATATACTTTACCATACAAACTTGCATGATTAAATTGAAAAATTCCAATATGTACCATATTTTGACAATAATGGAAATATAGCTAGCTGAAATCACGATATGGAATGACGTCTATCTTTACTTGGTTTATTTCGGGCTTTGCCATGCGTGAGTCCATCCGCTCGAATAAATCTTCCGAGCTTTTTCGATACTGAGCTCATGAAGTTAGATTTTCTTGGCAAAGGAGGTTTACCAGCAGATGGCTGAGTAATGACCAAAGGGCTGCTTGAGGCTGATGTATTTGACTTTGGTTTTTCAATTTCTATCAACCTCGTCTTCATTTTCAGCAGCTCAAATTTCAGCTCCTGATTTTCTCGTTTTAGACTCGAGACCTCGTCTGAAACAGGGTTAGTAGAGAACTGATCATCCCTTTTGGAAGAAACAAGAGCAGGAGGTTCAGTTGCTACAAGCTGGCTCCCATTGTGAAGACGTTGCTGCTCGTAGTAA</gDNA_template>
            <first_frame> R  N  Q  I  L  Q  S  F  I  N  N  I  S  G  *  S  T  K  K  Y  I  L  Y  H  T  N  L  H  D  *  I  E  K  F  Q  Y  V  P  Y  F  D  N  N  G  N  I  A  S  *  N  H  D  M  E  *  R  L  S  L  L  G  L  F  R  A  L  P  C  V  S  P  S  A  R  I  N  L  P  S  F  F  D  T  E  L  M  K  L  D  F  L  G  K  G  G  L  P  A  D  G  *  V  M  T  K  G  L  L  E  A  D  V  F  D  F  G  F  S  I  S  I  N  L  V  F  I  F  S  S  S  N  F  S  S  *  F  S  R  F  R  L  E  T  S  S  E  T  G  L  V  E  N  *  S  S  L  L  E  E  T  R  A  G  G  S  V  A  T  S  W  L  P  L  *  R  R  C  C  S  *  * </first_frame>
            <second_frame>  E  I  K  Y  Y  N  L  S  *  I  I  F  L  D  K  A  R  K  N  I  Y  F  T  I  Q  T  C  M  I  K  L  K  N  S  N  M  Y  H  I  L  T  I  M  E  I  *  L  A  E  I  T  I  W  N  D  V  Y  L  Y  L  V  Y  F  G  L  C  H  A  *  V  H  P  L  E  *  I  F  R  A  F  S  I  L  S  S  *  S  *  I  F  L  A  K  E  V  Y  Q  Q  M  A  E  *  *  P  K  G  C  L  R  L  M  Y  L  T  L  V  F  Q  F  L  S  T  S  S  S  F  S  A  A  Q  I  S  A  P  D  F  L  V  L  D  S  R  P  R  L  K  Q  G  *  *  R  T  D  H  P  F  W  K  K  Q  E  Q  E  V  Q  L  L  Q  A  G  S  H  C  E  D  V  A  A  R  S   </second_frame>
            <third_frame>   K  S  N  I  T  I  F  H  K  *  Y  F  W  I  K  H  E  K  I  Y  T  L  P  Y  K  L  A  *  L  N  *  K  I  P  I  C  T  I  F  *  Q  *  W  K  Y  S  *  L  K  S  R  Y  G  M  T  S  I  F  T  W  F  I  S  G  F  A  M  R  E  S  I  R  S  N  K  S  S  E  L  F  R  Y  *  A  H  E  V  R  F  S  W  Q  R  R  F  T  S  R  W  L  S  N  D  Q  R  A  A  *  G  *  C  I  *  L  W  F  F  N  F  Y  Q  P  R  L  H  F  Q  Q  L  K  F  Q  L  L  I  F  S  F  *  T  R  D  L  V  *  N  R  V  S  R  E  L  I  I  P  F  G  R  N  K  S  R  R  F  S  C  Y  K  L  A  P  I  V  K  T  L  L  L  V  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLe0053H21.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="47334" PGL_stop="47866"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47334" e_stop="47866"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.902"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="47334" e_stop="47866" e_length="533"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47334" stop="47866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408958" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGATCGCTTCCCAATAATATTGGTCAGGTACCACTACTACTAGTCTAGTCTTTTTCTCTTCTCTTCTCCTCTCTACTTATTTCTCTAAAAACAAAAACAAAAAAAAAAAAGTTTCATTCACAAGTTCAATTGGAAAAACTTTTCTCTAATTCCTTCCTCTCATGATGCAATTTACTGAGAGTTTACCTCCACAAGTTTCATCATTTTCAAGTTTGATGATGAACAAGGATAGTAGTACTAATAATAATCAGATCCAACGCGCCCGCCCGTGGCCTGGTTTTCACACATCGAAGAATTTGGGGAACATTGGGGATACTAATTGCATGGAACAGTTGTTAGTCCATTGCGCCAATGCCATCGAGAGCAATGACGCAACTTTAGCACAACAAATATTATGGGTCCTTAATAACATTGCCCCTCCTGATGGTGACTCGAACCAACGCCTAACTTGTGGATTCCTACGAGCCCTAATTCTTCGTGCTGCGAAAATTGGGACTTGTAAATTACTCACTGCTAATCTGAATCATTCCAT</gDNA_template>
            <first_frame> W  I  A  S  Q  *  Y  W  S  G  T  T  T  T  S  L  V  F  F  S  S  L  L  L  S  T  Y  F  S  K  N  K  N  K  K  K  K  V  S  F  T  S  S  I  G  K  T  F  L  *  F  L  P  L  M  M  Q  F  T  E  S  L  P  P  Q  V  S  S  F  S  S  L  M  M  N  K  D  S  S  T  N  N  N  Q  I  Q  R  A  R  P  W  P  G  F  H  T  S  K  N  L  G  N  I  G  D  T  N  C  M  E  Q  L  L  V  H  C  A  N  A  I  E  S  N  D  A  T  L  A  Q  Q  I  L  W  V  L  N  N  I  A  P  P  D  G  D  S  N  Q  R  L  T  C  G  F  L  R  A  L  I  L  R  A  A  K  I  G  T  C  K  L  L  T  A  N  L  N  H  S   </first_frame>
            <second_frame>  G  S  L  P  N  N  I  G  Q  V  P  L  L  L  V  *  S  F  S  L  L  F  S  S  L  L  I  S  L  K  T  K  T  K  K  K  K  F  H  S  Q  V  Q  L  E  K  L  F  S  N  S  F  L  S  *  C  N  L  L  R  V  Y  L  H  K  F  H  H  F  Q  V  *  *  *  T  R  I  V  V  L  I  I  I  R  S  N  A  P  A  R  G  L  V  F  T  H  R  R  I  W  G  T  L  G  I  L  I  A  W  N  S  C  *  S  I  A  P  M  P  S  R  A  M  T  Q  L  *  H  N  K  Y  Y  G  S  L  I  T  L  P  L  L  M  V  T  R  T  N  A  *  L  V  D  S  Y  E  P  *  F  F  V  L  R  K  L  G  L  V  N  Y  S  L  L  I  *  I  I  P  </second_frame>
            <third_frame>   D  R  F  P  I  I  L  V  R  Y  H  Y  Y  *  S  S  L  F  L  F  S  S  P  L  Y  L  F  L  *  K  Q  K  Q  K  K  K  S  F  I  H  K  F  N  W  K  N  F  S  L  I  P  S  S  H  D  A  I  Y  *  E  F  T  S  T  S  F  I  I  F  K  F  D  D  E  Q  G  *  *  Y  *  *  *  S  D  P  T  R  P  P  V  A  W  F  S  H  I  E  E  F  G  E  H  W  G  Y  *  L  H  G  T  V  V  S  P  L  R  Q  C  H  R  E  Q  *  R  N  F  S  T  T  N  I  M  G  P  *  *  H  C  P  S  *  W  *  L  E  P  T  P  N  L  W  I  P  T  S  P  N  S  S  C  C  E  N  W  D  L  *  I  T  H  C  *  S  E  S  F  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0053H21.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47484" stop="47864"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>381</number_coding_nucleotides>
                  <number_encoded_amino_acids>127</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLPLMMQFTESLPPQVSSFSSLMMNKDSSTNNNQIQRARPWPGFHTSKNLGNIGDTNCMEQLLVHCANAIESNDATLAQQILWVLNNIAPPDGDSNQRLTCGFLRALILRAAKIGTCKLLTANLNHS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="47868" PGL_stop="50045"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47868" e_stop="48838"/>
            <exon e_start="49225" e_stop="49235"/>
            <exon e_start="50002" e_stop="50045"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.891" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.818"/>
          <exon-only e_score="0.659"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="47868" e_stop="48838" e_length="971"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.891">
            <gDNA_intron_boundary i_start="48839" i_stop="49224" i_length="386"/>
          </intron>
          <exon e_serial="2" e_score="0.818">
            <gDNA_exon_boundary e_start="49225" e_stop="49235" e_length="11"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="49236" i_stop="50001" i_length="766"/>
          </intron>
          <exon e_serial="3" e_score="0.659">
            <gDNA_exon_boundary e_start="50002" e_stop="50045" e_length="44"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47868" stop="48327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48244" stop="48673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48458" stop="48838"/>
              <exon start="49225" stop="49235"/>
              <exon start="50002" stop="50045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E434593" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAACTCATAAATTCTCCATTATTGAGCTTGCAAGTTTCGTTGATTTAACCCCCTTGGCATCGGTTCGGGTTCACGGCTGCTAACGCTTCTATATTAGAAGCTGTGGAAGGTTACTCTATTATTCACATTGTTGATTTCAGCTTAACTCATTGCATGCAAATTCCAACACTTATAGATGCAGTTTCTACTCGAGTAGAAGGACCTCCGTTGATCAAACTAACGGTAGCTGGTGCAACCGAAGATTTACCGCCTATGCTTGATCTTTCTTACGAAGAATTAGGTGCTAAATTGGTAAATTTCGCAAGGTCACGAAATGTCATGATGGAATTTAGAGTAATTCCTTCGAGTTCTTCGGATGGTTTTTCAAATGTAATCGAACAGCTACGTGTTCAAAATCTAATACGTCCGGATAATGGCGAAGCACTAGTAATAAACTGTCACATGATGCTTCATTACATACCGGAGGAAACAACGGTAATTTCCAACTCATTCCGTGCCATGTTTCTTAAGGCCATTCGGAATTTGGACCCAACAATTGTTGTGCTAGTAGATGAAGACGCGGATTTTACTTCTAATAATCTGGTGTGCAGATTAAGATCGGCGTTTAATTATTTATGGATACCTTATGATACAGTGGATACATTTCTTCCGCGAGGGAGCAAGCAAAGGCAGTGGTATGAAGCGGATATTTGCTGGAAGATTGAGAACGTGATAGCTCAGGAGGGAATACAACGACTAGAACGGCTGGAGCCGAAGAGTCAGTGGGTGCAACGGATGAGAAATGCAAATTTCAGAAGCAGTGGATTTAGCGAAGAGGGAGTTACGGAAGTGAAGAACATGTTGGATGAACATGCAGCTGGGTGGGGGCTAAAGAGGGATGAAGAATATCTTGTGCTTACATGGAAAGGACATAATGTTGTATTTGCTACTGCTTGGGTTCCTCTTTAGTTAATTAATTTCATTTCACTTA : GCTATTACACA : TAAAAATTACAAAATAATATATAACAATAAAAAAAATTTAATGA</gDNA_template>
            <first_frame> E  T  H  K  F  S  I  I  E  L  A  S  F  V  D  L  T  P  L  A  S  V  R  V  H  G  C  *  R  F  Y  I  R  S  C  G  R  L  L  Y  Y  S  H  C  *  F  Q  L  N  S  L  H  A  N  S  N  T  Y  R  C  S  F  Y  S  S  R  R  T  S  V  D  Q  T  N  G  S  W  C  N  R  R  F  T  A  Y  A  *  S  F  L  R  R  I  R  C  *  I  G  K  F  R  K  V  T  K  C  H  D  G  I  *  S  N  S  F  E  F  F  G  W  F  F  K  C  N  R  T  A  T  C  S  K  S  N  T  S  G  *  W  R  S  T  S  N  K  L  S  H  D  A  S  L  H  T  G  G  N  N  G  N  F  Q  L  I  P  C  H  V  S  *  G  H  S  E  F  G  P  N  N  C  C  A  S  R  *  R  R  G  F  Y  F  *  *  S  G  V  Q  I  K  I  G  V  *  L  F  M  D  T  L  *  Y  S  G  Y  I  S  S  A  R  E  Q  A  K  A  V  V  *  S  G  Y  L  L  E  D  *  E  R  D  S  S  G  G  N  T  T  T  R  T  A  G  A  E  E  S  V  G  A  T  D  E  K  C  K  F  Q  K  Q  W  I  *  R  R  G  S  Y  G  S  E  E  H  V  G  *  T  C  S  W  V  G  A  K  E  G  *  R  I  S  C  A  Y  M  E  R  T  *  C  C  I  C  Y  C  L  G  S  S  L  V  N  *  F  H  F  T  * :   L  L  H   : I  K  I  T  K  *  Y  I  T  I  K  K  I  *  * </first_frame>
            <second_frame>  K  L  I  N  S  P  L  L  S  L  Q  V  S  L  I  *  P  P  W  H  R  F  G  F  T  A  A  N  A  S  I  L  E  A  V  E  G  Y  S  I  I  H  I  V  D  F  S  L  T  H  C  M  Q  I  P  T  L  I  D  A  V  S  T  R  V  E  G  P  P  L  I  K  L  T  V  A  G  A  T  E  D  L  P  P  M  L  D  L  S  Y  E  E  L  G  A  K  L  V  N  F  A  R  S  R  N  V  M  M  E  F  R  V  I  P  S  S  S  S  D  G  F  S  N  V  I  E  Q  L  R  V  Q  N  L  I  R  P  D  N  G  E  A  L  V  I  N  C  H  M  M  L  H  Y  I  P  E  E  T  T  V  I  S  N  S  F  R  A  M  F  L  K  A  I  R  N  L  D  P  T  I  V  V  L  V  D  E  D  A  D  F  T  S  N  N  L  V  C  R  L  R  S  A  F  N  Y  L  W  I  P  Y  D  T  V  D  T  F  L  P  R  G  S  K  Q  R  Q  W  Y  E  A  D  I  C  W  K  I  E  N  V  I  A  Q  E  G  I  Q  R  L  E  R  L  E  P  K  S  Q  W  V  Q  R  M  R  N  A  N  F  R  S  S  G  F  S  E  E  G  V  T  E  V  K  N  M  L  D  E  H  A  A  G  W  G  L  K  R  D  E  E  Y  L  V  L  T  W  K  G  H  N  V  V  F  A  T  A  W  V  P  L  *  L  I  N  F  I  S  L   : S  Y  Y  T  :  *  K  L  Q  N  N  I  *  Q  *  K  K  F  N   </second_frame>
            <third_frame>   N  S  *  I  L  H  Y  *  A  C  K  F  R  *  F  N  P  L  G  I  G  S  G  S  R  L  L  T  L  L  Y  *  K  L  W  K  V  T  L  L  F  T  L  L  I  S  A  *  L  I  A  C  K  F  Q  H  L  *  M  Q  F  L  L  E  *  K  D  L  R  *  S  N  *  R  *  L  V  Q  P  K  I  Y  R  L  C  L  I  F  L  T  K  N  *  V  L  N  W  *  I  S  Q  G  H  E  M  S  *  W  N  L  E  *  F  L  R  V  L  R  M  V  F  Q  M  *  S  N  S  Y  V  F  K  I  *  Y  V  R  I  M  A  K  H  *  *  *  T  V  T  *  C  F  I  T  Y  R  R  K  Q  R  *  F  P  T  H  S  V  P  C  F  L  R  P  F  G  I  W  T  Q  Q  L  L  C  *  *  M  K  T  R  I  L  L  L  I  I  W  C  A  D  *  D  R  R  L  I  I  Y  G  Y  L  M  I  Q  W  I  H  F  F  R  E  G  A  S  K  G  S  G  M  K  R  I  F  A  G  R  L  R  T  *  *  L  R  R  E  Y  N  D  *  N  G  W  S  R  R  V  S  G  C  N  G  *  E  M  Q  I  S  E  A  V  D  L  A  K  R  E  L  R  K  *  R  T  C  W  M  N  M  Q  L  G  G  G  *  R  G  M  K  N  I  L  C  L  H  G  K  D  I  M  L  Y  L  L  L  L  G  F  L  F  S  *  L  I  S  F  H  L  :  A  I  T  H :   K  N  Y  K  I  I  Y  N  N  K  K  N  L  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0053H21.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47917" stop="48816"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>897</number_coding_nucleotides>
                  <number_encoded_amino_acids>299</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PPWHRFGFTAANASILEAVEGYSIIHIVDFSLTHCMQIPTLIDAVSTRVEGPPLIKLTVAGATEDLPPMLDLSYEELGAKLVNFARSRNVMMEFRVIPSSSSDGFSNVIEQLRVQNLIRPDNGEALVINCHMMLHYIPEETTVISNSFRAMFLKAIRNLDPTIVVLVDEDADFTSNNLVCRLRSAFNYLWIPYDTVDTFLPRGSKQRQWYEADICWKIENVIAQEGIQRLERLEPKSQWVQRMRNANFRSSGFSEEGVTEVKNMLDEHAAGWGLKRDEEYLVLTWKGHNVVFATAWVPL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="48873" PGL_stop="48154"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48873" e_stop="48154"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.951"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.951">
            <gDNA_exon_boundary e_start="48873" e_stop="48154" e_length="720"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48873" stop="48154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573593" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTGATGGAGTTAAAATAAAACAAAAGTTAATACTAAGTGAAATGAAATTAATTAACTAAAGAGGAACCCAAGCAGTAGCAAATACAACATTATGTCCTTTCCATGTAAGCACAAGATATTCTTCATCCCTCTTTAGCCCCCACCCAGCTGCATGTTCATCCAACATGTTCTTCACTTCCGTAACTCCCTCTTCGCTAAATCCACTGCTTCTGAAATTTGCATTTCTCATCCGTTGCACCCACTGACTCTTCGGCTCCAGCCGTTCTAGTCGTTGTATTCCCTCCTGAGCTATCACGTTCTCAATCTTCCAGCAAATATCCGCTTCATACCACTGCCTTTGCTTGCTCCCTCGCGGAAGAAATGTATCCACTGTATCATAAGGTATCCATAAATAATTAAACGCCGATCTTAATCTGCACACCAGATTATTAGAAGTAAAATCCGCGTCTTCATCTACTAGCACAACAATTGTTGGGTCCAAATTCCGAATGGCCTTAAGAAACATGGCACGGAATGAGTTGGAAATTACCGTTGTTTCCTCCGGTATGTAATGAAGCATCATGTGACAGTTTATTACTAGTGCTTCGCCATTATCCGGACGTATTAGATTTTGAACACGTAGCTGTTCGATTACATTTGAAAAACCATCCGAAGAACTCGAAGGAATTACTCTAAATTCCATCATGACATTTCGTGACCTTGCGAAATTTACCAATTT</gDNA_template>
            <first_frame> I  *  W  S  *  N  K  T  K  V  N  T  K  *  N  E  I  N  *  L  K  R  N  P  S  S  S  K  Y  N  I  M  S  F  P  C  K  H  K  I  F  F  I  P  L  *  P  P  P  S  C  M  F  I  Q  H  V  L  H  F  R  N  S  L  F  A  K  S  T  A  S  E  I  C  I  S  H  P  L  H  P  L  T  L  R  L  Q  P  F  *  S  L  Y  S  L  L  S  Y  H  V  L  N  L  P  A  N  I  R  F  I  P  L  P  L  L  A  P  S  R  K  K  C  I  H  C  I  I  R  Y  P  *  I  I  K  R  R  S  *  S  A  H  Q  I  I  R  S  K  I  R  V  F  I  Y  *  H  N  N  C  W  V  Q  I  P  N  G  L  K  K  H  G  T  E  *  V  G  N  Y  R  C  F  L  R  Y  V  M  K  H  H  V  T  V  Y  Y  *  C  F  A  I  I  R  T  Y  *  I  L  N  T  *  L  F  D  Y  I  *  K  T  I  R  R  T  R  R  N  Y  S  K  F  H  H  D  I  S  *  P  C  E  I  Y  Q  F </first_frame>
            <second_frame>  F  D  G  V  K  I  K  Q  K  L  I  L  S  E  M  K  L  I  N  *  R  G  T  Q  A  V  A  N  T  T  L  C  P  F  H  V  S  T  R  Y  S  S  S  L  F  S  P  H  P  A  A  C  S  S  N  M  F  F  T  S  V  T  P  S  S  L  N  P  L  L  L  K  F  A  F  L  I  R  C  T  H  *  L  F  G  S  S  R  S  S  R  C  I  P  S  *  A  I  T  F  S  I  F  Q  Q  I  S  A  S  Y  H  C  L  C  L  L  P  R  G  R  N  V  S  T  V  S  *  G  I  H  K  *  L  N  A  D  L  N  L  H  T  R  L  L  E  V  K  S  A  S  S  S  T  S  T  T  I  V  G  S  K  F  R  M  A  L  R  N  M  A  R  N  E  L  E  I  T  V  V  S  S  G  M  *  *  S  I  M  *  Q  F  I  T  S  A  S  P  L  S  G  R  I  R  F  *  T  R  S  C  S  I  T  F  E  K  P  S  E  E  L  E  G  I  T  L  N  S  I  M  T  F  R  D  L  A  K  F  T  N   </second_frame>
            <third_frame>   L  M  E  L  K  *  N  K  S  *  Y  *  V  K  *  N  *  L  T  K  E  E  P  K  Q  *  Q  I  Q  H  Y  V  L  S  M  *  A  Q  D  I  L  H  P  S  L  A  P  T  Q  L  H  V  H  P  T  C  S  S  L  P  *  L  P  L  R  *  I  H  C  F  *  N  L  H  F  S  S  V  A  P  T  D  S  S  A  P  A  V  L  V  V  V  F  P  P  E  L  S  R  S  Q  S  S  S  K  Y  P  L  H  T  T  A  F  A  C  S  L  A  E  E  M  Y  P  L  Y  H  K  V  S  I  N  N  *  T  P  I  L  I  C  T  P  D  Y  *  K  *  N  P  R  L  H  L  L  A  Q  Q  L  L  G  P  N  S  E  W  P  *  E  T  W  H  G  M  S  W  K  L  P  L  F  P  P  V  C  N  E  A  S  C  D  S  L  L  L  V  L  R  H  Y  P  D  V  L  D  F  E  H  V  A  V  R  L  H  L  K  N  H  P  K  N  S  K  E  L  L  *  I  P  S  *  H  F  V  T  L  R  N  L  P  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLe0053H21.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="54355" PGL_stop="51891"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54355" e_stop="54056"/>
            <exon e_start="53886" e_stop="53686"/>
            <exon e_start="53581" e_stop="53416"/>
            <exon e_start="52569" e_stop="51891"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="0.957"/>
          <exon-intron don_prob="0.998" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.927" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.957">
            <gDNA_exon_boundary e_start="54355" e_stop="54056" e_length="300"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="54055" i_stop="53887" i_length="169"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="53886" e_stop="53686" e_length="201"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.992">
            <gDNA_intron_boundary i_start="53685" i_stop="53582" i_length="104"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="53581" e_stop="53416" e_length="166"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.927">
            <gDNA_intron_boundary i_start="53415" i_stop="52570" i_length="846"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="52569" e_stop="51891" e_length="679"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54355" stop="54056"/>
              <exon start="53886" stop="53686"/>
              <exon start="53581" stop="53440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449314" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54307" stop="54056"/>
              <exon start="53886" stop="53686"/>
              <exon start="53581" stop="53440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54307" stop="54056"/>
              <exon start="53886" stop="53686"/>
              <exon start="53581" stop="53576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54306" stop="54056"/>
              <exon start="53886" stop="53686"/>
              <exon start="53581" stop="53416"/>
              <exon start="52569" stop="52460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54305" stop="54056"/>
              <exon start="53886" stop="53686"/>
              <exon start="53581" stop="53513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207438" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54305" stop="54056"/>
              <exon start="53886" stop="53748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54304" stop="54056"/>
              <exon start="53886" stop="53686"/>
              <exon start="53581" stop="53428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54304" stop="54056"/>
              <exon start="53886" stop="53686"/>
              <exon start="53581" stop="53528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204024" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54303" stop="54056"/>
              <exon start="53886" stop="53686"/>
              <exon start="53581" stop="53416"/>
              <exon start="52569" stop="52456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54303" stop="54056"/>
              <exon start="53886" stop="53686"/>
              <exon start="53581" stop="53416"/>
              <exon start="52569" stop="52547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211557" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54303" stop="54056"/>
              <exon start="53886" stop="53686"/>
              <exon start="53581" stop="53416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214783" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54303" stop="54056"/>
              <exon start="53886" stop="53686"/>
              <exon start="53581" stop="53556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201561" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54303" stop="54056"/>
              <exon start="53886" stop="53686"/>
              <exon start="53581" stop="53568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54303" stop="54056"/>
              <exon start="53886" stop="53788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54303" stop="54157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54302" stop="54056"/>
              <exon start="53886" stop="53686"/>
              <exon start="53581" stop="53416"/>
              <exon start="52569" stop="52499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54302" stop="54056"/>
              <exon start="53886" stop="53686"/>
              <exon start="53581" stop="53416"/>
              <exon start="52569" stop="52519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54302" stop="54056"/>
              <exon start="53886" stop="53686"/>
              <exon start="53581" stop="53416"/>
              <exon start="52569" stop="52547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213302" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54302" stop="54056"/>
              <exon start="53886" stop="53743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204475" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54301" stop="54056"/>
              <exon start="53886" stop="53686"/>
              <exon start="53581" stop="53416"/>
              <exon start="52569" stop="52487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54301" stop="54056"/>
              <exon start="53886" stop="53686"/>
              <exon start="53581" stop="53416"/>
              <exon start="52569" stop="52498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213557" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54301" stop="54056"/>
              <exon start="53886" stop="53686"/>
              <exon start="53581" stop="53423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214258" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54301" stop="54056"/>
              <exon start="53886" stop="53686"/>
              <exon start="53581" stop="53562"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54301" stop="54056"/>
              <exon start="53886" stop="53686"/>
              <exon start="53581" stop="53566"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209177" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54301" stop="54056"/>
              <exon start="53886" stop="53738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54301" stop="54056"/>
              <exon start="53886" stop="53753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54299" stop="54056"/>
              <exon start="53886" stop="53686"/>
              <exon start="53581" stop="53513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404602" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54299" stop="54056"/>
              <exon start="53886" stop="53740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205215" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54298" stop="54056"/>
              <exon start="53886" stop="53686"/>
              <exon start="53581" stop="53426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54297" stop="54056"/>
              <exon start="53886" stop="53686"/>
              <exon start="53581" stop="53442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54297" stop="54056"/>
              <exon start="53886" stop="53686"/>
              <exon start="53581" stop="53463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54297" stop="54056"/>
              <exon start="53886" stop="53686"/>
              <exon start="53581" stop="53574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212049" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54296" stop="54056"/>
              <exon start="53886" stop="53686"/>
              <exon start="53581" stop="53416"/>
              <exon start="52569" stop="52465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54296" stop="54056"/>
              <exon start="53886" stop="53686"/>
              <exon start="53581" stop="53449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54295" stop="54056"/>
              <exon start="53886" stop="53686"/>
              <exon start="53581" stop="53416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54294" stop="54056"/>
              <exon start="53886" stop="53686"/>
              <exon start="53581" stop="53416"/>
              <exon start="52569" stop="52459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212984" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54294" stop="54056"/>
              <exon start="53886" stop="53686"/>
              <exon start="53581" stop="53425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210356" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54294" stop="54056"/>
              <exon start="53886" stop="53686"/>
              <exon start="53581" stop="53457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212881" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54294" stop="54095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54292" stop="54056"/>
              <exon start="53886" stop="53686"/>
              <exon start="53581" stop="53416"/>
              <exon start="52569" stop="52363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54291" stop="54056"/>
              <exon start="53886" stop="53686"/>
              <exon start="53581" stop="53416"/>
              <exon start="52569" stop="52459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213071" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54291" stop="54056"/>
              <exon start="53886" stop="53686"/>
              <exon start="53581" stop="53524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54290" stop="54056"/>
              <exon start="53886" stop="53686"/>
              <exon start="53581" stop="53416"/>
              <exon start="52569" stop="52443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54289" stop="54056"/>
              <exon start="53886" stop="53686"/>
              <exon start="53581" stop="53462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54288" stop="54056"/>
              <exon start="53886" stop="53686"/>
              <exon start="53581" stop="53416"/>
              <exon start="52569" stop="52530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54288" stop="54056"/>
              <exon start="53886" stop="53686"/>
              <exon start="53581" stop="53529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54288" stop="54092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200928" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54286" stop="54056"/>
              <exon start="53886" stop="53686"/>
              <exon start="53581" stop="53461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54285" stop="54056"/>
              <exon start="53886" stop="53686"/>
              <exon start="53581" stop="53416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551298" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54285" stop="54056"/>
              <exon start="53886" stop="53686"/>
              <exon start="53581" stop="53416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688500" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54284" stop="54056"/>
              <exon start="53886" stop="53686"/>
              <exon start="53581" stop="53471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54284" stop="54056"/>
              <exon start="53886" stop="53686"/>
              <exon start="53581" stop="53531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54284" stop="54056"/>
              <exon start="53886" stop="53711"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203955" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54281" stop="54056"/>
              <exon start="53886" stop="53686"/>
              <exon start="53581" stop="53418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54280" stop="54056"/>
              <exon start="53886" stop="53686"/>
              <exon start="53581" stop="53416"/>
              <exon start="52569" stop="52550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54275" stop="54056"/>
              <exon start="53886" stop="53686"/>
              <exon start="53581" stop="53416"/>
              <exon start="52569" stop="52399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54275" stop="54056"/>
              <exon start="53886" stop="53686"/>
              <exon start="53581" stop="53416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54275" stop="54056"/>
              <exon start="53886" stop="53686"/>
              <exon start="53581" stop="53420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54275" stop="54056"/>
              <exon start="53886" stop="53789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54274" stop="54056"/>
              <exon start="53886" stop="53686"/>
              <exon start="53581" stop="53416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54272" stop="54056"/>
              <exon start="53886" stop="53714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210627" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54271" stop="54056"/>
              <exon start="53886" stop="53686"/>
              <exon start="53581" stop="53416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54270" stop="54056"/>
              <exon start="53886" stop="53686"/>
              <exon start="53581" stop="53422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273455" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54268" stop="54056"/>
              <exon start="53886" stop="53686"/>
              <exon start="53581" stop="53416"/>
              <exon start="52569" stop="52513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208746" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54268" stop="54056"/>
              <exon start="53886" stop="53686"/>
              <exon start="53581" stop="53416"/>
              <exon start="52569" stop="52550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214217" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54265" stop="54056"/>
              <exon start="53886" stop="53686"/>
              <exon start="53581" stop="53416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211962" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54254" stop="54056"/>
              <exon start="53886" stop="53686"/>
              <exon start="53581" stop="53573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54240" stop="54056"/>
              <exon start="53886" stop="53686"/>
              <exon start="53581" stop="53416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54231" stop="54056"/>
              <exon start="53886" stop="53686"/>
              <exon start="53581" stop="53416"/>
              <exon start="52569" stop="52441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395881" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54219" stop="54056"/>
              <exon start="53886" stop="53686"/>
              <exon start="53581" stop="53565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54218" stop="54056"/>
              <exon start="53886" stop="53686"/>
              <exon start="53581" stop="53473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54218" stop="54056"/>
              <exon start="53886" stop="53742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201979" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54213" stop="54056"/>
              <exon start="53886" stop="53686"/>
              <exon start="53581" stop="53426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201353" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54208" stop="54056"/>
              <exon start="53886" stop="53686"/>
              <exon start="53581" stop="53521"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211900" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54155" stop="54056"/>
              <exon start="53886" stop="53686"/>
              <exon start="53581" stop="53416"/>
              <exon start="52569" stop="52243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54155" stop="54056"/>
              <exon start="53886" stop="53686"/>
              <exon start="53581" stop="53461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54143" stop="54056"/>
              <exon start="53886" stop="53686"/>
              <exon start="53581" stop="53416"/>
              <exon start="52569" stop="52362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394050" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54142" stop="54056"/>
              <exon start="53886" stop="53686"/>
              <exon start="53581" stop="53416"/>
              <exon start="52569" stop="52347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374702" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54142" stop="54056"/>
              <exon start="53886" stop="53686"/>
              <exon start="53581" stop="53569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54092" stop="54056"/>
              <exon start="53886" stop="53686"/>
              <exon start="53581" stop="53416"/>
              <exon start="52569" stop="52238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212653" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54091" stop="54056"/>
              <exon start="53886" stop="53686"/>
              <exon start="53581" stop="53416"/>
              <exon start="52569" stop="52275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410389" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54089" stop="54056"/>
              <exon start="53886" stop="53686"/>
              <exon start="53581" stop="53416"/>
              <exon start="52569" stop="52341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54089" stop="54056"/>
              <exon start="53886" stop="53686"/>
              <exon start="53581" stop="53416"/>
              <exon start="52569" stop="52444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211380" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53844" stop="53686"/>
              <exon start="53581" stop="53416"/>
              <exon start="52569" stop="52345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209125" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53796" stop="53686"/>
              <exon start="53581" stop="53416"/>
              <exon start="52569" stop="52226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201856" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53784" stop="53686"/>
              <exon start="53581" stop="53416"/>
              <exon start="52569" stop="52139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407709" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53770" stop="53686"/>
              <exon start="53581" stop="53416"/>
              <exon start="52569" stop="52459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53717" stop="53686"/>
              <exon start="53581" stop="53416"/>
              <exon start="52569" stop="52013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53717" stop="53686"/>
              <exon start="53581" stop="53416"/>
              <exon start="52569" stop="52064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53717" stop="53686"/>
              <exon start="53581" stop="53416"/>
              <exon start="52569" stop="52068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53717" stop="53686"/>
              <exon start="53581" stop="53416"/>
              <exon start="52569" stop="52072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211403" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53717" stop="53686"/>
              <exon start="53581" stop="53416"/>
              <exon start="52569" stop="52213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53717" stop="53686"/>
              <exon start="53581" stop="53416"/>
              <exon start="52569" stop="52226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266273" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53717" stop="53686"/>
              <exon start="53581" stop="53416"/>
              <exon start="52569" stop="52287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53526" stop="53416"/>
              <exon start="52569" stop="51918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53526" stop="53416"/>
              <exon start="52569" stop="52057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53526" stop="53416"/>
              <exon start="52569" stop="52150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53493" stop="53416"/>
              <exon start="52569" stop="52145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205847" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53474" stop="53416"/>
              <exon start="52569" stop="51899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52512" stop="51891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460525" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52509" stop="51906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52475" stop="51906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393903" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52459" stop="51928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52161" stop="51900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377749" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGCTATATAATCCTTTCTCTCAATTAAACATTTGCATAACCCATTGTACTTAATTTTATAGCCAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGATGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACCAGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAG : GGATGTGATGCTTCAGTGATTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAGCCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGCTG : TCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTG : CGGCCCATTCTGTTGGTTTTTCTCATTGTGGCAAATTTTCCAACCGGATCTACAACTTCAGCCCTAAAAATCCAATAGACCCAACCCTTAACAAGCAATATGCAGCCCAATTACAAGGGATGTGTCCAAGGAATGTTGACCCAAGAATAGCCATTGACATGGATCCCAAAACTCCAAGGACATTTGACAATAATTACTACAAAAATTTACAACAAGGTATGGGCCTATTCACGTCAGATCAAGTGTTGTATACAGACAAAAGGTCCAAGGGAACTGTGGATCTTTGGGCCAGTAACTCAAAATCATTCCAAAATGCTTTTGTAACTGCAATGACAAAACTGGGCCGAGTTGGTGTGAAGACGGGGAGGAACGGAAATATTCGGTTTGATTGTGGAAGAATGAATTGAAGTGACATTTTACACAAATGGCCAATACTTATAGATTCTGTCCCAGTTAGCTTAATGGATTAAATTTGTCGAATAAATTAAAATTTTATTTTAATTACGCAAAAATTAGTTCGTTGAGTGTTGTCAAGGATAGGAGTTTATTTATATTTTTATTTGTAGGAAGGTGAGTCCTGAATAAGGGGATTAGTCTTGAACCTTCTAATGTTTATATGAAAAATAACAGTCCTATTGTGGGATGTGTAATTGTTGAATAAAAACTCTGTGTGAAATCC</gDNA_template>
            <first_frame> W  L  Y  N  P  F  S  Q  L  N  I  C  I  T  H  C  T  *  F  Y  S  Q  R  N  *  M  G  R  L  N  L  L  M  S  V  L  L  S  I  L  S  V  S  I  V  L  M  P  N  L  A  S  A  Q  L  K  T  N  Y  Y  A  N  I  C  P  N  V  E  S  I  V  R  N  V  V  N  Q  K  F  K  Q  T  F  V  T  V  P  A  V  L  R  L  F  F  H  D  C  F  V  E  :  G  C  D  A  S  V  I  V  S  S  T  P  G  N  T  A  E  K  D  H  S  D  N  L  S  L  A  G  D  G  F  D  T  V  I  K  A  K  A  A  V  D  S  N  S  R  C  K  N  K  V  S  C  A  D  I  L  A  L  A  T  R  D  V  I  Q  L  :  S  G  G  P  W  Y  P  V  E  L  G  R  L  D  G  F  T  S  K  A  S  N  V  E  G  K  L  P  K  P  T  F  N  L  N  Q  L  N  S  M  F  A  S  H  G  L  T  Q  A  D  M  I  A  L  S   : A  A  H  S  V  G  F  S  H  C  G  K  F  S  N  R  I  Y  N  F  S  P  K  N  P  I  D  P  T  L  N  K  Q  Y  A  A  Q  L  Q  G  M  C  P  R  N  V  D  P  R  I  A  I  D  M  D  P  K  T  P  R  T  F  D  N  N  Y  Y  K  N  L  Q  Q  G  M  G  L  F  T  S  D  Q  V  L  Y  T  D  K  R  S  K  G  T  V  D  L  W  A  S  N  S  K  S  F  Q  N  A  F  V  T  A  M  T  K  L  G  R  V  G  V  K  T  G  R  N  G  N  I  R  F  D  C  G  R  M  N  *  S  D  I  L  H  K  W  P  I  L  I  D  S  V  P  V  S  L  M  D  *  I  C  R  I  N  *  N  F  I  L  I  T  Q  K  L  V  R  *  V  L  S  R  I  G  V  Y  L  Y  F  Y  L  *  E  G  E  S  *  I  R  G  L  V  L  N  L  L  M  F  I  *  K  I  T  V  L  L  W  D  V  *  L  L  N  K  N  S  V  *  N   </first_frame>
            <second_frame>  G  Y  I  I  L  S  L  N  *  T  F  A  *  P  I  V  L  N  F  I  A  R  E  I  K  W  V  V  *  I  F  L  C  Q  Y  Y  Y  Q  F  Y  Q  L  V  L  C  *  C  L  T  W  H  L  H  N  *  R  P  I  I  T  P  I  F  V  L  M  L  N  P  L  L  E  M  L  L  T  R  N  S  N  K  L  L  S  L  S  L  L  F  S  V  S  S  S  M  I  A  L  L  R :   D  V  M  L  Q  *  L  Y  H  Q  H  Q  G  T  Q  L  R  R  I  I  Q  I  I  Y  H  W  Q  E  M  D  L  I  L  *  L  K  P  K  P  L  L  I  Q  T  H  V  V  K  I  K  S  L  V  L  T  F  S  L  *  P  P  E  M  S  F  S  C :   L  G  D  H  G  T  Q  W  N  *  E  G  L  M  G  S  H  Q  K  H  R  M  W  K  G  S  Y  Q  N  Q  H  S  I  S  I  N  S  I  L  C  L  P  L  M  V  *  L  R  L  T  *  S  P  F  L  :  R  P  I  L  L  V  F  L  I  V  A  N  F  P  T  G  S  T  T  S  A  L  K  I  Q  *  T  Q  P  L  T  S  N  M  Q  P  N  Y  K  G  C  V  Q  G  M  L  T  Q  E  *  P  L  T  W  I  P  K  L  Q  G  H  L  T  I  I  T  T  K  I  Y  N  K  V  W  A  Y  S  R  Q  I  K  C  C  I  Q  T  K  G  P  R  E  L  W  I  F  G  P  V  T  Q  N  H  S  K  M  L  L  *  L  Q  *  Q  N  W  A  E  L  V  *  R  R  G  G  T  E  I  F  G  L  I  V  E  E  *  I  E  V  T  F  Y  T  N  G  Q  Y  L  *  I  L  S  Q  L  A  *  W  I  K  F  V  E  *  I  K  I  L  F  *  L  R  K  N  *  F  V  E  C  C  Q  G  *  E  F  I  Y  I  F  I  C  R  K  V  S  P  E  *  G  D  *  S  *  T  F  *  C  L  Y  E  K  *  Q  S  Y  C  G  M  C  N  C  *  I  K  T  L  C  E  I  </second_frame>
            <third_frame>   A  I  *  S  F  L  S  I  K  H  L  H  N  P  L  Y  L  I  L  *  P  E  K  L  N  G  S  S  K  S  S  Y  V  S  I  I  I  N  F  I  S  *  Y  C  V  D  A  *  L  G  I  C  T  I  K  D  Q  L  L  R  Q  Y  L  S  *  C  *  I  H  C  *  K  C  C  *  P  E  I  Q  T  N  F  C  H  C  P  C  C  S  P  S  L  L  P  *  L  L  C  *   : G  M  *  C  F  S  D  C  I  I  N  T  R  E  H  S  *  E  G  S  F  R  *  S  I  I  G  R  R  W  I  *  Y  C  N  *  S  Q  S  R  C  *  F  K  L  T  L  *  K  *  S  L  L  C  *  H  S  R  F  S  H  Q  R  C  H  S  A   : V  W  G  T  M  V  P  S  G  I  R  K  A  *  W  V  H  I  K  S  I  E  C  G  R  E  A  T  K  T  N  I  Q  S  Q  S  T  Q  F  Y  V  C  L  S  W  S  N  S  G  *  H  D  R  P  F  C :   G  P  F  C  W  F  F  S  L  W  Q  I  F  Q  P  D  L  Q  L  Q  P  *  K  S  N  R  P  N  P  *  Q  A  I  C  S  P  I  T  R  D  V  S  K  E  C  *  P  K  N  S  H  *  H  G  S  Q  N  S  K  D  I  *  Q  *  L  L  Q  K  F  T  T  R  Y  G  P  I  H  V  R  S  S  V  V  Y  R  Q  K  V  Q  G  N  C  G  S  L  G  Q  *  L  K  I  I  P  K  C  F  C  N  C  N  D  K  T  G  P  S  W  C  E  D  G  E  E  R  K  Y  S  V  *  L  W  K  N  E  L  K  *  H  F  T  Q  M  A  N  T  Y  R  F  C  P  S  *  L  N  G  L  N  L  S  N  K  L  K  F  Y  F  N  Y  A  K  I  S  S  L  S  V  V  K  D  R  S  L  F  I  F  L  F  V  G  R  *  V  L  N  K  G  I  S  L  E  P  S  N  V  Y  M  K  N  N  S  P  I  V  G  C  V  I  V  E  *  K  L  C  V  K  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0053H21.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54280" stop="54056"/>
                    <exon start="53886" stop="53686"/>
                    <exon start="53581" stop="53416"/>
                    <exon start="52569" stop="52163"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>996</number_coding_nucleotides>
                  <number_encoded_amino_acids>332</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MGRLNLLMSVLLSILSVSIVLMPNLASAQLKTNYYANICPNVESIVRNVVNQKFKQTFVTVPAVLRLFFHDCFVEGCDASVIVSSTPGNTAEKDHSDNLSLAGDGFDTVIKAKAAVDSNSRCKNKVSCADILALATRDVIQLSGGPWYPVELGRLDGFTSKASNVEGKLPKPTFNLNQLNSMFASHGLTQADMIALSAAHSVGFSHCGKFSNRIYNFSPKNPIDPTLNKQYAAQLQGMCPRNVDPRIAIDMDPKTPRTFDNNYYKNLQQGMGLFTSDQVLYTDKRSKGTVDLWASNSKSFQNAFVTAMTKLGRVGVKTGRNGNIRFDCGRMN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="51916" PGL_stop="52542"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51916" e_stop="52542"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="51916" e_stop="52542" e_length="627"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51916" stop="52512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202467" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51919" stop="52542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607504" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52085" stop="52533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576052" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAATTACACATCCCACAATAGGACTGTTATTTTTCATATAAACATTAGAAGGTTCAAGACTAATCCCCTTATTCAGGACTCACCTTCCTACAAATAAAAATATAAATAAACTCCTATCCTTGACAACACTCAACGAACTAATTTTTGCGTAATTAAAATAAAATTTTAATTTATTCGACAAATTTAATCCATTAAGCTAACTGGGACAGAATCTATAAGTATTGGCCATTTGTGTAAAATGTCACTTCAATTCATTCTTCCACAATCAAACCGAATATTTCCGTTCCTCCCCGTCTTCACACCAACTCGGCCCAGTTTTGTCATTGCAGTTACAAAAGCATTTTGGAATGATTTTGAGTTACTGGCCCAAAGATCCACAGTTCCCTTGGACCTTTTGTCTGTATACAACACTTGATCTGACGTGAATAGGCCCATACCTTGTTGTAAATTTTTGTAGTAATTATTGTCAAATGTCCTTGGAGTTTTGGGATCCATGTCAATGGCTATTCTTGGGTCAACATTCCTTGGACACATCCCTTGTAATTGGGCTGCATATTGCTTGTTAAGGGTTGGGTCTATTGGATTTTTAGGGCTGAAGTTGTAGATCCGGTTGGAAAATTTGCCAC</gDNA_template>
            <first_frame> T  I  T  H  P  T  I  G  L  L  F  F  I  *  T  L  E  G  S  R  L  I  P  L  F  R  T  H  L  P  T  N  K  N  I  N  K  L  L  S  L  T  T  L  N  E  L  I  F  A  *  L  K  *  N  F  N  L  F  D  K  F  N  P  L  S  *  L  G  Q  N  L  *  V  L  A  I  C  V  K  C  H  F  N  S  F  F  H  N  Q  T  E  Y  F  R  S  S  P  S  S  H  Q  L  G  P  V  L  S  L  Q  L  Q  K  H  F  G  M  I  L  S  Y  W  P  K  D  P  Q  F  P  W  T  F  C  L  Y  T  T  L  D  L  T  *  I  G  P  Y  L  V  V  N  F  C  S  N  Y  C  Q  M  S  L  E  F  W  D  P  C  Q  W  L  F  L  G  Q  H  S  L  D  T  S  L  V  I  G  L  H  I  A  C  *  G  L  G  L  L  D  F  *  G  *  S  C  R  S  G  W  K  I  C  H </first_frame>
            <second_frame>  Q  L  H  I  P  Q  *  D  C  Y  F  S  Y  K  H  *  K  V  Q  D  *  S  P  Y  S  G  L  T  F  L  Q  I  K  I  *  I  N  S  Y  P  *  Q  H  S  T  N  *  F  L  R  N  *  N  K  I  L  I  Y  S  T  N  L  I  H  *  A  N  W  D  R  I  Y  K  Y  W  P  F  V  *  N  V  T  S  I  H  S  S  T  I  K  P  N  I  S  V  P  P  R  L  H  T  N  S  A  Q  F  C  H  C  S  Y  K  S  I  L  E  *  F  *  V  T  G  P  K  I  H  S  S  L  G  P  F  V  C  I  Q  H  L  I  *  R  E  *  A  H  T  L  L  *  I  F  V  V  I  I  V  K  C  P  W  S  F  G  I  H  V  N  G  Y  S  W  V  N  I  P  W  T  H  P  L  *  L  G  C  I  L  L  V  K  G  W  V  Y  W  I  F  R  A  E  V  V  D  P  V  G  K  F  A   </second_frame>
            <third_frame>   N  Y  T  S  H  N  R  T  V  I  F  H  I  N  I  R  R  F  K  T  N  P  L  I  Q  D  S  P  S  Y  K  *  K  Y  K  *  T  P  I  L  D  N  T  Q  R  T  N  F  C  V  I  K  I  K  F  *  F  I  R  Q  I  *  S  I  K  L  T  G  T  E  S  I  S  I  G  H  L  C  K  M  S  L  Q  F  I  L  P  Q  S  N  R  I  F  P  F  L  P  V  F  T  P  T  R  P  S  F  V  I  A  V  T  K  A  F  W  N  D  F  E  L  L  A  Q  R  S  T  V  P  L  D  L  L  S  V  Y  N  T  *  S  D  V  N  R  P  I  P  C  C  K  F  L  *  *  L  L  S  N  V  L  G  V  L  G  S  M  S  M  A  I  L  G  S  T  F  L  G  H  I  P  C  N  W  A  A  Y  C  L  L  R  V  G  S  I  G  F  L  G  L  K  L  *  I  R  L  E  N  L  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0053H21.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52104" stop="52331"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIKLTGTESISIGHLCKMSLQFILPQSNRIFPFLPVFTPTRPSFVIAVTKAFWNDFELLAQRSTVPLDLLSVYNT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0053H21.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52135" stop="52341"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLAICVKCHFNSFFHNQTEYFRSSPSSHQLGPVLSLQLQKHFGMILSYWPKDPQFPWTFCLYTTLDLT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="68517" PGL_stop="70821"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68517" e_stop="69000"/>
            <exon e_start="69791" e_stop="69965"/>
            <exon e_start="70048" e_stop="70821"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.996" e_score="0.932"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.932">
            <gDNA_exon_boundary e_start="68517" e_stop="69000" e_length="484"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.996">
            <gDNA_intron_boundary i_start="69001" i_stop="69790" i_length="790"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="69791" e_stop="69965" e_length="175"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="69966" i_stop="70047" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="0.992">
            <gDNA_exon_boundary e_start="70048" e_stop="70821" e_length="774"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68517" stop="69000"/>
              <exon start="69791" stop="69965"/>
              <exon start="70048" stop="70132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68518" stop="69000"/>
              <exon start="69791" stop="69886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68725" stop="69000"/>
              <exon start="69791" stop="69965"/>
              <exon start="70048" stop="70141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303542" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68881" stop="69000"/>
              <exon start="69791" stop="69965"/>
              <exon start="70048" stop="70406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68882" stop="69000"/>
              <exon start="69791" stop="69965"/>
              <exon start="70048" stop="70480"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68882" stop="69000"/>
              <exon start="69791" stop="69965"/>
              <exon start="70048" stop="70450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377556" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68882" stop="69000"/>
              <exon start="69791" stop="69965"/>
              <exon start="70048" stop="70425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550129" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68882" stop="69000"/>
              <exon start="69791" stop="69965"/>
              <exon start="70048" stop="70424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68882" stop="69000"/>
              <exon start="69791" stop="69965"/>
              <exon start="70048" stop="70290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68882" stop="69000"/>
              <exon start="69791" stop="69965"/>
              <exon start="70048" stop="70271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227050" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68882" stop="69000"/>
              <exon start="69791" stop="69965"/>
              <exon start="70048" stop="70269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68882" stop="69000"/>
              <exon start="69791" stop="69965"/>
              <exon start="70048" stop="70209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242833" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68882" stop="69000"/>
              <exon start="69791" stop="69965"/>
              <exon start="70048" stop="70208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68882" stop="69000"/>
              <exon start="69791" stop="69965"/>
              <exon start="70048" stop="70207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68882" stop="69000"/>
              <exon start="69791" stop="69965"/>
              <exon start="70048" stop="70205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68882" stop="69000"/>
              <exon start="69791" stop="69965"/>
              <exon start="70048" stop="70186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232917" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68882" stop="69000"/>
              <exon start="69791" stop="69965"/>
              <exon start="70048" stop="70182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238170" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68882" stop="69000"/>
              <exon start="69791" stop="69965"/>
              <exon start="70048" stop="70167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68888" stop="69000"/>
              <exon start="69791" stop="69965"/>
              <exon start="70048" stop="70309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68924" stop="69000"/>
              <exon start="69791" stop="69965"/>
              <exon start="70048" stop="70283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205030" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68931" stop="69000"/>
              <exon start="69791" stop="69965"/>
              <exon start="70048" stop="70454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68931" stop="69000"/>
              <exon start="69791" stop="69965"/>
              <exon start="70048" stop="70327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70072" stop="70719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389557" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70130" stop="70756"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70150" stop="70821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546422" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70168" stop="70750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70202" stop="70750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377555" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAGTTAAAAAAATATGTTATCGTGATTAGAAAATGTTTAAATATTATGTGCACTGCTGGACTTGTCTGGGGGCATCTCTTTCACAAAACTCAAACCACATTGGCTAAGGGGACTGGATTTGTTTGGCATGCTTCCTCCCTAGTCCCCCCCTACATACCTATTTCACCCTCTTTTTTTTCCTATCAAACTCCAAAAATACAACAACATTTGCTTTGATTTCCGTGTGCTAAATGAGAATCTTAAATTCTTCCTTATCAGTCCTAATAATGATATTTTATTCTTTCCTCTTTTAATTTTATATATATAATATATATATATATATATATCTTTGGGGGTGCTCACTTTGGCAGTATATACTAGAGGCAAAATTAAAAGTGGGATGTTAATAAACTCTCTCAAACAAAGAAAAAGCCTAAAAGTCTCCAAGTTTTGGTTTTTAAACTCCTCAAAGTTCTTCTATTCGATCAATAAAGTACGTTGCAG : GTACTAATATACATTCCCAATTCCGGAGATACATTGAGTCAAATCGAAGAAACATCGTTCTCTTCCTCTTCTTTCTGTCTTTTTTATTTTAAAAATGGAGAAGCTTATCAATCCTTACGATAAGGAATACATGAAGATGGCGATGTTAAAGCATGAAGAGATCTTCAGAGAACAG : GTGTACGAACTGCATCGTCTATATCAAACACAGAAATTGCTGATGAGAAACATGTCAAGTAGTACTAATAATCGGCCTCAACAAGATCATCATCAAGTAGTGGTAAACCAATTAGACTCGAACAAAAAGATAACTGCTCGTCAATGTATTGACTTGGAAATAAGGCCAAATACAGACGAAGAACACATTGCAGAATCAGGTGGTGAAGATGATACTCATGAATTGGAATTAACATTAGGGCTATCAAGTTACAACGTTCGTCGAAGGAGAAAAACAGCTCATTTTGATTCTTCTTCACCAAGTTTTTCTTCATCTAATTCAACAGGATCTGCTTCTAGCCAAATAAAGAACACTACGACAAATTTAGTGAGAAATTCGAGGAATATTGAAGGTAGTAAATGGGGACTTGAAGAGAAATTGCCAGTTTCGAATAATTTTCAGATTGGTGCAAGAAGTTCACAAAGTAATCAAAATGTTGATCAAGAGCAATATAGATCACAAGATTCGTTGAATAATCCTCCTTGGCTTTTTCAAGTTTTGAGTTTGAATATGACGTAAAAAAAAAACTACTATTATTTAATTATGATGCTGATCGATGATTAATTAGTCGATCGGATGTGATAAGATTTTAGACTTTCATCCTACCGATCGACTACTTATGTAATTTAATTTTGTGTGAAATTTTAGTATCATCTTTTGTTTAATTCTAATCTCTTTGTTTAATTTGCTAACGGTATTTTCGGGATTCAACAGCCAAATATAGTTGATTTGGAT</gDNA_template>
            <first_frame> K  V  K  K  I  C  Y  R  D  *  K  M  F  K  Y  Y  V  H  C  W  T  C  L  G  A  S  L  S  Q  N  S  N  H  I  G  *  G  D  W  I  C  L  A  C  F  L  P  S  P  P  L  H  T  Y  F  T  L  F  F  F  L  S  N  S  K  N  T  T  T  F  A  L  I  S  V  C  *  M  R  I  L  N  S  S  L  S  V  L  I  M  I  F  Y  S  F  L  F  *  F  Y  I  Y  N  I  Y  I  Y  I  Y  L  W  G  C  S  L  W  Q  Y  I  L  E  A  K  L  K  V  G  C  *  *  T  L  S  N  K  E  K  A  *  K  S  P  S  F  G  F  *  T  P  Q  S  S  S  I  R  S  I  K  Y  V  A   : G  T  N  I  H  S  Q  F  R  R  Y  I  E  S  N  R  R  N  I  V  L  F  L  F  F  L  S  F  L  F  *  K  W  R  S  L  S  I  L  T  I  R  N  T  *  R  W  R  C  *  S  M  K  R  S  S  E  N  R :   C  T  N  C  I  V  Y  I  K  H  R  N  C  *  *  E  T  C  Q  V  V  L  I  I  G  L  N  K  I  I  I  K  *  W  *  T  N  *  T  R  T  K  R  *  L  L  V  N  V  L  T  W  K  *  G  Q  I  Q  T  K  N  T  L  Q  N  Q  V  V  K  M  I  L  M  N  W  N  *  H  *  G  Y  Q  V  T  T  F  V  E  G  E  K  Q  L  I  L  I  L  L  H  Q  V  F  L  H  L  I  Q  Q  D  L  L  L  A  K  *  R  T  L  R  Q  I  *  *  E  I  R  G  I  L  K  V  V  N  G  D  L  K  R  N  C  Q  F  R  I  I  F  R  L  V  Q  E  V  H  K  V  I  K  M  L  I  K  S  N  I  D  H  K  I  R  *  I  I  L  L  G  F  F  K  F  *  V  *  I  *  R  K  K  K  T  T  I  I  *  L  *  C  *  S  M  I  N  *  S  I  G  C  D  K  I  L  D  F  H  P  T  D  R  L  L  M  *  F  N  F  V  *  N  F  S  I  I  F  C  L  I  L  I  S  L  F  N  L  L  T  V  F  S  G  F  N  S  Q  I  *  L  I  W   </first_frame>
            <second_frame>  K  L  K  K  Y  V  I  V  I  R  K  C  L  N  I  M  C  T  A  G  L  V  W  G  H  L  F  H  K  T  Q  T  T  L  A  K  G  T  G  F  V  W  H  A  S  S  L  V  P  P  Y  I  P  I  S  P  S  F  F  S  Y  Q  T  P  K  I  Q  Q  H  L  L  *  F  P  C  A  K  *  E  S  *  I  L  P  Y  Q  S  *  *  *  Y  F  I  L  S  S  F  N  F  I  Y  I  I  Y  I  Y  I  Y  I  F  G  G  A  H  F  G  S  I  Y  *  R  Q  N  *  K  W  D  V  N  K  L  S  Q  T  K  K  K  P  K  S  L  Q  V  L  V  F  K  L  L  K  V  L  L  F  D  Q  *  S  T  L  Q  :  V  L  I  Y  I  P  N  S  G  D  T  L  S  Q  I  E  E  T  S  F  S  S  S  S  F  C  L  F  Y  F  K  N  G  E  A  Y  Q  S  L  R  *  G  I  H  E  D  G  D  V  K  A  *  R  D  L  Q  R  T   : G  V  R  T  A  S  S  I  S  N  T  E  I  A  D  E  K  H  V  K  *  Y  *  *  S  A  S  T  R  S  S  S  S  S  G  K  P  I  R  L  E  Q  K  D  N  C  S  S  M  Y  *  L  G  N  K  A  K  Y  R  R  R  T  H  C  R  I  R  W  *  R  *  Y  S  *  I  G  I  N  I  R  A  I  K  L  Q  R  S  S  K  E  K  N  S  S  F  *  F  F  F  T  K  F  F  F  I  *  F  N  R  I  C  F  *  P  N  K  E  H  Y  D  K  F  S  E  K  F  E  E  Y  *  R  *  *  M  G  T  *  R  E  I  A  S  F  E  *  F  S  D  W  C  K  K  F  T  K  *  S  K  C  *  S  R  A  I  *  I  T  R  F  V  E  *  S  S  L  A  F  S  S  F  E  F  E  Y  D  V  K  K  K  L  L  L  F  N  Y  D  A  D  R  *  L  I  S  R  S  D  V  I  R  F  *  T  F  I  L  P  I  D  Y  L  C  N  L  I  L  C  E  I  L  V  S  S  F  V  *  F  *  S  L  C  L  I  C  *  R  Y  F  R  D  S  T  A  K  Y  S  *  F  G  </second_frame>
            <third_frame>   S  *  K  N  M  L  S  *  L  E  N  V  *  I  L  C  A  L  L  D  L  S  G  G  I  S  F  T  K  L  K  P  H  W  L  R  G  L  D  L  F  G  M  L  P  P  *  S  P  P  T  Y  L  F  H  P  L  F  F  P  I  K  L  Q  K  Y  N  N  I  C  F  D  F  R  V  L  N  E  N  L  K  F  F  L  I  S  P  N  N  D  I  L  F  F  P  L  L  I  L  Y  I  *  Y  I  Y  I  Y  I  S  L  G  V  L  T  L  A  V  Y  T  R  G  K  I  K  S  G  M  L  I  N  S  L  K  Q  R  K  S  L  K  V  S  K  F  W  F  L  N  S  S  K  F  F  Y  S  I  N  K  V  R  C  R :   Y  *  Y  T  F  P  I  P  E  I  H  *  V  K  S  K  K  H  R  S  L  P  L  L  S  V  F  F  I  L  K  M  E  K  L  I  N  P  Y  D  K  E  Y  M  K  M  A  M  L  K  H  E  E  I  F  R  E  Q  :  V  Y  E  L  H  R  L  Y  Q  T  Q  K  L  L  M  R  N  M  S  S  S  T  N  N  R  P  Q  Q  D  H  H  Q  V  V  V  N  Q  L  D  S  N  K  K  I  T  A  R  Q  C  I  D  L  E  I  R  P  N  T  D  E  E  H  I  A  E  S  G  G  E  D  D  T  H  E  L  E  L  T  L  G  L  S  S  Y  N  V  R  R  R  R  K  T  A  H  F  D  S  S  S  P  S  F  S  S  S  N  S  T  G  S  A  S  S  Q  I  K  N  T  T  T  N  L  V  R  N  S  R  N  I  E  G  S  K  W  G  L  E  E  K  L  P  V  S  N  N  F  Q  I  G  A  R  S  S  Q  S  N  Q  N  V  D  Q  E  Q  Y  R  S  Q  D  S  L  N  N  P  P  W  L  F  Q  V  L  S  L  N  M  T  *  K  K  N  Y  Y  Y  L  I  M  M  L  I  D  D  *  L  V  D  R  M  *  *  D  F  R  L  S  S  Y  R  S  T  T  Y  V  I  *  F  C  V  K  F  *  Y  H  L  L  F  N  S  N  L  F  V  *  F  A  N  G  I  F  G  I  Q  Q  P  N  I  V  D  L  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0053H21.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69828" stop="69965"/>
                    <exon start="70048" stop="70605"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>693</number_coding_nucleotides>
                  <number_encoded_amino_acids>231</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VKSKKHRSLPLLSVFFILKMEKLINPYDKEYMKMAMLKHEEIFREQVYELHRLYQTQKLLMRNMSSSTNNRPQQDHHQVVVNQLDSNKKITARQCIDLEIRPNTDEEHIAESGGEDDTHELELTLGLSSYNVRRRRKTAHFDSSSPSFSSSNSTGSASSQIKNTTTNLVRNSRNIEGSKWGLEEKLPVSNNFQIGARSSQSNQNVDQEQYRSQDSLNNPPWLFQVLSLNMT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0053H21.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68518" stop="68733"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLKKYVIVIRKCLNIMCTAGLVWGHLFHKTQTTLAKGTGFVWHASSLVPPYIPISPSFFSYQTPKIQQHLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="69128" e_stop="69311"/>
            <exon e_start="69791" e_stop="69965"/>
            <exon e_start="70048" e_stop="70821"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.538" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="69128" e_stop="69311" e_length="184"/>
          </exon>
          <intron i_serial="1" don_prob="0.538" acc_prob="0.996">
            <gDNA_intron_boundary i_start="69312" i_stop="69790" i_length="479"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="69791" e_stop="69965" e_length="175"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="69966" i_stop="70047" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="0.992">
            <gDNA_exon_boundary e_start="70048" e_stop="70821" e_length="774"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69128" stop="69311"/>
              <exon start="69791" stop="69965"/>
              <exon start="70048" stop="70111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70072" stop="70719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389557" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70130" stop="70756"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70150" stop="70821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546422" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70168" stop="70750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70202" stop="70750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377555" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCGATCAACGACAAAAATAATCAAAAATATCCATCTGATCATCAATTAATAGCTAGCAAATTTCTTTGATACACGGAATGGAATTATATGTTTTCTAATTACCTATCTAATGAAAACTAAAAATATCGAAAACGTATTAACAAAAAAAAAGAAGTGAGAAAAGCATGTGGCATGCCGTAAACTG : GTACTAATATACATTCCCAATTCCGGAGATACATTGAGTCAAATCGAAGAAACATCGTTCTCTTCCTCTTCTTTCTGTCTTTTTTATTTTAAAAATGGAGAAGCTTATCAATCCTTACGATAAGGAATACATGAAGATGGCGATGTTAAAGCATGAAGAGATCTTCAGAGAACAG : GTGTACGAACTGCATCGTCTATATCAAACACAGAAATTGCTGATGAGAAACATGTCAAGTAGTACTAATAATCGGCCTCAACAAGATCATCATCAAGTAGTGGTAAACCAATTAGACTCGAACAAAAAGATAACTGCTCGTCAATGTATTGACTTGGAAATAAGGCCAAATACAGACGAAGAACACATTGCAGAATCAGGTGGTGAAGATGATACTCATGAATTGGAATTAACATTAGGGCTATCAAGTTACAACGTTCGTCGAAGGAGAAAAACAGCTCATTTTGATTCTTCTTCACCAAGTTTTTCTTCATCTAATTCAACAGGATCTGCTTCTAGCCAAATAAAGAACACTACGACAAATTTAGTGAGAAATTCGAGGAATATTGAAGGTAGTAAATGGGGACTTGAAGAGAAATTGCCAGTTTCGAATAATTTTCAGATTGGTGCAAGAAGTTCACAAAGTAATCAAAATGTTGATCAAGAGCAATATAGATCACAAGATTCGTTGAATAATCCTCCTTGGCTTTTTCAAGTTTTGAGTTTGAATATGACGTAAAAAAAAAACTACTATTATTTAATTATGATGCTGATCGATGATTAATTAGTCGATCGGATGTGATAAGATTTTAGACTTTCATCCTACCGATCGACTACTTATGTAATTTAATTTTGTGTGAAATTTTAGTATCATCTTTTGTTTAATTCTAATCTCTTTGTTTAATTTGCTAACGGTATTTTCGGGATTCAACAGCCAAATATAGTTGATTTGGAT</gDNA_template>
            <first_frame> S  I  N  D  K  N  N  Q  K  Y  P  S  D  H  Q  L  I  A  S  K  F  L  *  Y  T  E  W  N  Y  M  F  S  N  Y  L  S  N  E  N  *  K  Y  R  K  R  I  N  K  K  K  E  V  R  K  A  C  G  M  P  *  T   : G  T  N  I  H  S  Q  F  R  R  Y  I  E  S  N  R  R  N  I  V  L  F  L  F  F  L  S  F  L  F  *  K  W  R  S  L  S  I  L  T  I  R  N  T  *  R  W  R  C  *  S  M  K  R  S  S  E  N  R :   C  T  N  C  I  V  Y  I  K  H  R  N  C  *  *  E  T  C  Q  V  V  L  I  I  G  L  N  K  I  I  I  K  *  W  *  T  N  *  T  R  T  K  R  *  L  L  V  N  V  L  T  W  K  *  G  Q  I  Q  T  K  N  T  L  Q  N  Q  V  V  K  M  I  L  M  N  W  N  *  H  *  G  Y  Q  V  T  T  F  V  E  G  E  K  Q  L  I  L  I  L  L  H  Q  V  F  L  H  L  I  Q  Q  D  L  L  L  A  K  *  R  T  L  R  Q  I  *  *  E  I  R  G  I  L  K  V  V  N  G  D  L  K  R  N  C  Q  F  R  I  I  F  R  L  V  Q  E  V  H  K  V  I  K  M  L  I  K  S  N  I  D  H  K  I  R  *  I  I  L  L  G  F  F  K  F  *  V  *  I  *  R  K  K  K  T  T  I  I  *  L  *  C  *  S  M  I  N  *  S  I  G  C  D  K  I  L  D  F  H  P  T  D  R  L  L  M  *  F  N  F  V  *  N  F  S  I  I  F  C  L  I  L  I  S  L  F  N  L  L  T  V  F  S  G  F  N  S  Q  I  *  L  I  W   </first_frame>
            <second_frame>  R  S  T  T  K  I  I  K  N  I  H  L  I  I  N  *  *  L  A  N  F  F  D  T  R  N  G  I  I  C  F  L  I  T  Y  L  M  K  T  K  N  I  E  N  V  L  T  K  K  K  K  *  E  K  H  V  A  C  R  K  L  :  V  L  I  Y  I  P  N  S  G  D  T  L  S  Q  I  E  E  T  S  F  S  S  S  S  F  C  L  F  Y  F  K  N  G  E  A  Y  Q  S  L  R  *  G  I  H  E  D  G  D  V  K  A  *  R  D  L  Q  R  T   : G  V  R  T  A  S  S  I  S  N  T  E  I  A  D  E  K  H  V  K  *  Y  *  *  S  A  S  T  R  S  S  S  S  S  G  K  P  I  R  L  E  Q  K  D  N  C  S  S  M  Y  *  L  G  N  K  A  K  Y  R  R  R  T  H  C  R  I  R  W  *  R  *  Y  S  *  I  G  I  N  I  R  A  I  K  L  Q  R  S  S  K  E  K  N  S  S  F  *  F  F  F  T  K  F  F  F  I  *  F  N  R  I  C  F  *  P  N  K  E  H  Y  D  K  F  S  E  K  F  E  E  Y  *  R  *  *  M  G  T  *  R  E  I  A  S  F  E  *  F  S  D  W  C  K  K  F  T  K  *  S  K  C  *  S  R  A  I  *  I  T  R  F  V  E  *  S  S  L  A  F  S  S  F  E  F  E  Y  D  V  K  K  K  L  L  L  F  N  Y  D  A  D  R  *  L  I  S  R  S  D  V  I  R  F  *  T  F  I  L  P  I  D  Y  L  C  N  L  I  L  C  E  I  L  V  S  S  F  V  *  F  *  S  L  C  L  I  C  *  R  Y  F  R  D  S  T  A  K  Y  S  *  F  G  </second_frame>
            <third_frame>   D  Q  R  Q  K  *  S  K  I  S  I  *  S  S  I  N  S  *  Q  I  S  L  I  H  G  M  E  L  Y  V  F  *  L  P  I  *  *  K  L  K  I  S  K  T  Y  *  Q  K  K  R  S  E  K  S  M  W  H  A  V  N  W :   Y  *  Y  T  F  P  I  P  E  I  H  *  V  K  S  K  K  H  R  S  L  P  L  L  S  V  F  F  I  L  K  M  E  K  L  I  N  P  Y  D  K  E  Y  M  K  M  A  M  L  K  H  E  E  I  F  R  E  Q  :  V  Y  E  L  H  R  L  Y  Q  T  Q  K  L  L  M  R  N  M  S  S  S  T  N  N  R  P  Q  Q  D  H  H  Q  V  V  V  N  Q  L  D  S  N  K  K  I  T  A  R  Q  C  I  D  L  E  I  R  P  N  T  D  E  E  H  I  A  E  S  G  G  E  D  D  T  H  E  L  E  L  T  L  G  L  S  S  Y  N  V  R  R  R  R  K  T  A  H  F  D  S  S  S  P  S  F  S  S  S  N  S  T  G  S  A  S  S  Q  I  K  N  T  T  T  N  L  V  R  N  S  R  N  I  E  G  S  K  W  G  L  E  E  K  L  P  V  S  N  N  F  Q  I  G  A  R  S  S  Q  S  N  Q  N  V  D  Q  E  Q  Y  R  S  Q  D  S  L  N  N  P  P  W  L  F  Q  V  L  S  L  N  M  T  *  K  K  N  Y  Y  Y  L  I  M  M  L  I  D  D  *  L  V  D  R  M  *  *  D  F  R  L  S  S  Y  R  S  T  T  Y  V  I  *  F  C  V  K  F  *  Y  H  L  L  F  N  S  N  L  F  V  *  F  A  N  G  I  F  G  I  Q  Q  P  N  I  V  D  L  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0053H21.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69828" stop="69965"/>
                    <exon start="70048" stop="70605"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>693</number_coding_nucleotides>
                  <number_encoded_amino_acids>231</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VKSKKHRSLPLLSVFFILKMEKLINPYDKEYMKMAMLKHEEIFREQVYELHRLYQTQKLLMRNMSSSTNNRPQQDHHQVVVNQLDSNKKITARQCIDLEIRPNTDEEHIAESGGEDDTHELELTLGLSSYNVRRRRKTAHFDSSSPSFSSSNSTGSASSQIKNTTTNLVRNSRNIEGSKWGLEEKLPVSNNFQIGARSSQSNQNVDQEQYRSQDSLNNPPWLFQVLSLNMT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="68574" e_stop="68989"/>
            <exon e_start="69791" e_stop="69866"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="68574" e_stop="68989" e_length="416"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="68990" i_stop="69790" i_length="801"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="69791" e_stop="69866" e_length="76"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68574" stop="68989"/>
              <exon start="69791" stop="69866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313683" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGACTTGTCTGGGGGCATCTCTTTCACAAAACTCAAACCACATTGGCTAAGGGGACTGGATTTGTTTGGCATGCTTCCTCCCTAGTCCCCCCCTACATACCTATTTCACCCTCTTTTTTTTCCTATCAAACTCCAAAAATACAACAACATTTGCTTTGATTTCCGTGTGCTAAATGAGAATCTTAAATTCTTCCTTATCAGTCCTAATAATGATATTTTATTCTTTCCTCTTTTAATTTTATATATATAATATATATATATATATATATCTTTGGGGGTGCTCACTTTGGCAGTATATACTAGAGGCAAAATTAAAAGTGGGATGTTAATAAACTCTCTCAAACAAAGAAAAAGCCTAAAAGTCTCCAAGTTTTGGTTTTTAAACTCCTCAAAGTTCTTCTATTCGATCAATAAA : GTACTAATATACATTCCCAATTCCGGAGATACATTGAGTCAAATCGAAGAAACATCGTTCTCTTCCTCTTCTTTCT</gDNA_template>
            <first_frame> W  T  C  L  G  A  S  L  S  Q  N  S  N  H  I  G  *  G  D  W  I  C  L  A  C  F  L  P  S  P  P  L  H  T  Y  F  T  L  F  F  F  L  S  N  S  K  N  T  T  T  F  A  L  I  S  V  C  *  M  R  I  L  N  S  S  L  S  V  L  I  M  I  F  Y  S  F  L  F  *  F  Y  I  Y  N  I  Y  I  Y  I  Y  L  W  G  C  S  L  W  Q  Y  I  L  E  A  K  L  K  V  G  C  *  *  T  L  S  N  K  E  K  A  *  K  S  P  S  F  G  F  *  T  P  Q  S  S  S  I  R  S  I  K :   Y  *  Y  T  F  P  I  P  E  I  H  *  V  K  S  K  K  H  R  S  L  P  L  L  S </first_frame>
            <second_frame>  G  L  V  W  G  H  L  F  H  K  T  Q  T  T  L  A  K  G  T  G  F  V  W  H  A  S  S  L  V  P  P  Y  I  P  I  S  P  S  F  F  S  Y  Q  T  P  K  I  Q  Q  H  L  L  *  F  P  C  A  K  *  E  S  *  I  L  P  Y  Q  S  *  *  *  Y  F  I  L  S  S  F  N  F  I  Y  I  I  Y  I  Y  I  Y  I  F  G  G  A  H  F  G  S  I  Y  *  R  Q  N  *  K  W  D  V  N  K  L  S  Q  T  K  K  K  P  K  S  L  Q  V  L  V  F  K  L  L  K  V  L  L  F  D  Q  *   : S  T  N  I  H  S  Q  F  R  R  Y  I  E  S  N  R  R  N  I  V  L  F  L  F  F   </second_frame>
            <third_frame>   D  L  S  G  G  I  S  F  T  K  L  K  P  H  W  L  R  G  L  D  L  F  G  M  L  P  P  *  S  P  P  T  Y  L  F  H  P  L  F  F  P  I  K  L  Q  K  Y  N  N  I  C  F  D  F  R  V  L  N  E  N  L  K  F  F  L  I  S  P  N  N  D  I  L  F  F  P  L  L  I  L  Y  I  *  Y  I  Y  I  Y  I  S  L  G  V  L  T  L  A  V  Y  T  R  G  K  I  K  S  G  M  L  I  N  S  L  K  Q  R  K  S  L  K  V  S  K  F  W  F  L  N  S  S  K  F  F  Y  S  I  N  K  :  V  L  I  Y  I  P  N  S  G  D  T  L  S  Q  I  E  E  T  S  F  S  S  S  S  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0053H21.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68825" stop="68989"/>
                    <exon start="69791" stop="69865"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YIYIYISLGVLTLAVYTRGKIKSGMLINSLKQRKSLKVSKFWFLNSSKFFYSINKVLIYIPNSGDTLSQIEETSFSSSSF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="77298" PGL_stop="73386"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77298" e_stop="77073"/>
            <exon e_start="76953" e_stop="76884"/>
            <exon e_start="76504" e_stop="75890"/>
            <exon e_start="75808" e_stop="75277"/>
            <exon e_start="73972" e_stop="73386"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.753" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.989" e_score="0.994"/>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="77298" e_stop="77073" e_length="226"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="77072" i_stop="76954" i_length="119"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="76953" e_stop="76884" e_length="70"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.965">
            <gDNA_intron_boundary i_start="76883" i_stop="76505" i_length="379"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="76504" e_stop="75890" e_length="615"/>
          </exon>
          <intron i_serial="3" don_prob="0.753" acc_prob="1.000">
            <gDNA_intron_boundary i_start="75889" i_stop="75809" i_length="81"/>
          </intron>
          <exon e_serial="4" e_score="0.994">
            <gDNA_exon_boundary e_start="75808" e_stop="75277" e_length="532"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="75276" i_stop="73973" i_length="1304"/>
          </intron>
          <exon e_serial="5" e_score="0.909">
            <gDNA_exon_boundary e_start="73972" e_stop="73386" e_length="587"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77298" stop="77073"/>
              <exon start="76953" stop="76884"/>
              <exon start="76504" stop="76281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76909" stop="76884"/>
              <exon start="76504" stop="76024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76342" stop="75890"/>
              <exon start="75808" stop="75756"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76141" stop="75890"/>
              <exon start="75808" stop="75407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322441" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76141" stop="75890"/>
              <exon start="75808" stop="75481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76017" stop="75890"/>
              <exon start="75808" stop="75345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275552" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75579" stop="75277"/>
              <exon start="73972" stop="73540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75359" stop="75277"/>
              <exon start="73972" stop="73402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428986" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75355" stop="75277"/>
              <exon start="73972" stop="73386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406019" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAACTTACAGAAGCAAAGAAAATGGCAACAAACATGTCTTTCTATTGTTTGCTTCATTAGGAAATAGTTTAAGGGAAAACGAATGAACATGGTTAAGGCCCGTAAAAGACTCGATCACCCATGGTGGATGACATGTTGATCTTGATAATGAACAACCTTCTACTCTAAACAGTATGTCCACTAAAAAGGAGCTTCTTTTCTCTGCTACAAAGAGGACCTCTCAATG : GATTTTCTCCCAGGAGATCCCAAGTGATGTGACTGTAAATGCCGCAGGAATCTCCTTTACACTACACAAG : TTCCCATTAGTTTCAAAGAGTGGATACATAAGGAAGTTGGTCTCGGAATCCAATGATGCTGACGTTTCTACGATCGAAATCCCTGATATACCTGGTGGAGGAGAGGCATTTGAATTTGCAGCAAAGTTTTGTTATGGAATAAATTTTGAGATAAGCACAAGAAACATTGCCTTGCTGAGATGTGCAGCAGAATATCTTGAGATGACAGAAGACTATGCAGTTGCAAATTTGGTGGGAAGAACTGAGGACTACTTTAGTGAAGTAGGAATTGAGAGCCTTCATAGTGCTGTTACAATTTTGCATTCATCAGAAAATCTTATTCCCATTTCAGAGAAAGTGAAATTGGTGAGCCGCTGCATTGACACAATTGCATATATAGCCTGTAAGGATAACCAATTCTCCACATCAGGTTGAGCAGAAGCTGGTATCTATGGATTGACTTCCTCCATGTTTTCGAACCCGAAGTCTATAGTTAACTGGTGGTCGGAGGATTTAACCGTCCTTAGAATTGATTTTTTCCAAAGGGTTCTGATTGCAATGATGGGAAGGGGATTCAAGCAGTATGCACTTGGACCAATATTAATGCTCTATGCACAGAAGTCTCTTCGTTGTTTG : GAAATATTTGGAAAGGGAAGGAAAAAGATTGAACCAAAACAAGAACATGAAAAAAGGGTTGTTGTAGAAACCATCGTTGGTCTTCTGCCAAGGGAGAAAAATGCATTATCCGTTAGCTTTTGTCAATGCTTCTCCGAGCTGCAATATATCTGCAGACCACGATGGCTGGCAGGCTCGACTTGGAGAAGAGGATGGATTGCAGCTTGGACAGGCTGTATTGGATGTATCTGTTAATTCCTTCATATTCCTTCAGAGGGGACACTTTGTTTGATGTTGAAATCATGCAGCTTATTGTGATGAATTTCCTTGCCTATGATATGGAGGAAAATCATTGGGAGATGAAGAGTATAATGAGTCTCATTCATTAAGAGACATGGAGCGAGTTGGGGAACTTATGGAAAATTACCTTGCTAAAATAGCTTCTGACCGTAATCTATCCATCACAAGCTTCATTAATCTTGCTGAAGTCATTCCAGAGCAAGAAAGGATCACTGAAGATGGGATGTACAGTGCCATTGACATTTATTTTAAG : GCACATCCAGATCTAAGCGACATGGAAAGAAAAAAGGTTTGCGGTGTTATAGACTGTCAAAAGCTTTCTCGAGAAGCTTGTGCTCATGCTGCTCAAAATGATAGGCTTCCTGTTCAGACAGTTGTGCAAGTACTTTACTACGAGCAACAATGTCTTCATAATGCCATGGATGGGAGCCAGCTTGTAGCAACCAAACCTCCTGCCCTTGTCTCTTCCAAGATGAATCATCAGTTCTCTGCTGACCCTGAGGACTCGAGTCTAAAACGAGAAAATCAGGAGCTGAAATTTGAGCTTCTGAAAATGAAGATGAGGTTGATGGAAATTGAAAAACCGAATTCAAACAGATCAGTTACAAGCAGCCCTTTGGTCATCACTCATCCATCTGCTGGTAAACCACCTTTGCCAAGTAACTCTAACTTCATGAGCTCAGTCTCGAAAAAGCTCAGAATATTAGTCGAGCTGATGGACTCACGCAAGGCAAAACTCGAAATAAACCAAAGTAAAGATAGACGTCATTCCATATCGTGATTTGAGCTAGCTATATTTGTATTATTGTCTAAATATGGTACGGACTTGATTCCAAATCT</gDNA_template>
            <first_frame> E  L  T  E  A  K  K  M  A  T  N  M  S  F  Y  C  L  L  H  *  E  I  V  *  G  K  T  N  E  H  G  *  G  P  *  K  T  R  S  P  M  V  D  D  M  L  I  L  I  M  N  N  L  L  L  *  T  V  C  P  L  K  R  S  F  F  S  L  L  Q  R  G  P  L  N   : G  F  S  P  R  R  S  Q  V  M  *  L  *  M  P  Q  E  S  P  L  H  Y  T  S :   S  H  *  F  Q  R  V  D  T  *  G  S  W  S  R  N  P  M  M  L  T  F  L  R  S  K  S  L  I  Y  L  V  E  E  R  H  L  N  L  Q  Q  S  F  V  M  E  *  I  L  R  *  A  Q  E  T  L  P  C  *  D  V  Q  Q  N  I  L  R  *  Q  K  T  M  Q  L  Q  I  W  W  E  E  L  R  T  T  L  V  K  *  E  L  R  A  F  I  V  L  L  Q  F  C  I  H  Q  K  I  L  F  P  F  Q  R  K  *  N  W  *  A  A  A  L  T  Q  L  H  I  *  P  V  R  I  T  N  S  P  H  Q  V  E  Q  K  L  V  S  M  D  *  L  P  P  C  F  R  T  R  S  L  *  L  T  G  G  R  R  I  *  P  S  L  E  L  I  F  S  K  G  F  *  L  Q  *  W  E  G  D  S  S  S  M  H  L  D  Q  Y  *  C  S  M  H  R  S  L  F  V  V  W :   K  Y  L  E  R  E  G  K  R  L  N  Q  N  K  N  M  K  K  G  L  L  *  K  P  S  L  V  F  C  Q  G  R  K  M  H  Y  P  L  A  F  V  N  A  S  P  S  C  N  I  S  A  D  H  D  G  W  Q  A  R  L  G  E  E  D  G  L  Q  L  G  Q  A  V  L  D  V  S  V  N  S  F  I  F  L  Q  R  G  H  F  V  *  C  *  N  H  A  A  Y  C  D  E  F  P  C  L  *  Y  G  G  K  S  L  G  D  E  E  Y  N  E  S  H  S  L  R  D  M  E  R  V  G  E  L  M  E  N  Y  L  A  K  I  A  S  D  R  N  L  S  I  T  S  F  I  N  L  A  E  V  I  P  E  Q  E  R  I  T  E  D  G  M  Y  S  A  I  D  I  Y  F  K  :  A  H  P  D  L  S  D  M  E  R  K  K  V  C  G  V  I  D  C  Q  K  L  S  R  E  A  C  A  H  A  A  Q  N  D  R  L  P  V  Q  T  V  V  Q  V  L  Y  Y  E  Q  Q  C  L  H  N  A  M  D  G  S  Q  L  V  A  T  K  P  P  A  L  V  S  S  K  M  N  H  Q  F  S  A  D  P  E  D  S  S  L  K  R  E  N  Q  E  L  K  F  E  L  L  K  M  K  M  R  L  M  E  I  E  K  P  N  S  N  R  S  V  T  S  S  P  L  V  I  T  H  P  S  A  G  K  P  P  L  P  S  N  S  N  F  M  S  S  V  S  K  K  L  R  I  L  V  E  L  M  D  S  R  K  A  K  L  E  I  N  Q  S  K  D  R  R  H  S  I  S  *  F  E  L  A  I  F  V  L  L  S  K  Y  G  T  D  L  I  P  N   </first_frame>
            <second_frame>  N  L  Q  K  Q  R  K  W  Q  Q  T  C  L  S  I  V  C  F  I  R  K  *  F  K  G  K  R  M  N  M  V  K  A  R  K  R  L  D  H  P  W  W  M  T  C  *  S  *  *  *  T  T  F  Y  S  K  Q  Y  V  H  *  K  G  A  S  F  L  C  Y  K  E  D  L  S  M  :  D  F  L  P  G  D  P  K  *  C  D  C  K  C  R  R  N  L  L  Y  T  T  Q   : V  P  I  S  F  K  E  W  I  H  K  E  V  G  L  G  I  Q  *  C  *  R  F  Y  D  R  N  P  *  Y  T  W  W  R  R  G  I  *  I  C  S  K  V  L  L  W  N  K  F  *  D  K  H  K  K  H  C  L  A  E  M  C  S  R  I  S  *  D  D  R  R  L  C  S  C  K  F  G  G  K  N  *  G  L  L  *  *  S  R  N  *  E  P  S  *  C  C  Y  N  F  A  F  I  R  K  S  Y  S  H  F  R  E  S  E  I  G  E  P  L  H  *  H  N  C  I  Y  S  L  *  G  *  P  I  L  H  I  R  L  S  R  S  W  Y  L  W  I  D  F  L  H  V  F  E  P  E  V  Y  S  *  L  V  V  G  G  F  N  R  P  *  N  *  F  F  P  K  G  S  D  C  N  D  G  K  G  I  Q  A  V  C  T  W  T  N  I  N  A  L  C  T  E  V  S  S  L  F   : G  N  I  W  K  G  K  E  K  D  *  T  K  T  R  T  *  K  K  G  C  C  R  N  H  R  W  S  S  A  K  G  E  K  C  I  I  R  *  L  L  S  M  L  L  R  A  A  I  Y  L  Q  T  T  M  A  G  R  L  D  L  E  K  R  M  D  C  S  L  D  R  L  Y  W  M  Y  L  L  I  P  S  Y  S  F  R  G  D  T  L  F  D  V  E  I  M  Q  L  I  V  M  N  F  L  A  Y  D  M  E  E  N  H  W  E  M  K  S  I  M  S  L  I  H  *  E  T  W  S  E  L  G  N  L  W  K  I  T  L  L  K  *  L  L  T  V  I  Y  P  S  Q  A  S  L  I  L  L  K  S  F  Q  S  K  K  G  S  L  K  M  G  C  T  V  P  L  T  F  I  L  R :   H  I  Q  I  *  A  T  W  K  E  K  R  F  A  V  L  *  T  V  K  S  F  L  E  K  L  V  L  M  L  L  K  M  I  G  F  L  F  R  Q  L  C  K  Y  F  T  T  S  N  N  V  F  I  M  P  W  M  G  A  S  L  *  Q  P  N  L  L  P  L  S  L  P  R  *  I  I  S  S  L  L  T  L  R  T  R  V  *  N  E  K  I  R  S  *  N  L  S  F  *  K  *  R  *  G  *  W  K  L  K  N  R  I  Q  T  D  Q  L  Q  A  A  L  W  S  S  L  I  H  L  L  V  N  H  L  C  Q  V  T  L  T  S  *  A  Q  S  R  K  S  S  E  Y  *  S  S  *  W  T  H  A  R  Q  N  S  K  *  T  K  V  K  I  D  V  I  P  Y  R  D  L  S  *  L  Y  L  Y  Y  C  L  N  M  V  R  T  *  F  Q  I  </second_frame>
            <third_frame>   T  Y  R  S  K  E  N  G  N  K  H  V  F  L  L  F  A  S  L  G  N  S  L  R  E  N  E  *  T  W  L  R  P  V  K  D  S  I  T  H  G  G  *  H  V  D  L  D  N  E  Q  P  S  T  L  N  S  M  S  T  K  K  E  L  L  F  S  A  T  K  R  T  S  Q  W :   I  F  S  Q  E  I  P  S  D  V  T  V  N  A  A  G  I  S  F  T  L  H  K  :  F  P  L  V  S  K  S  G  Y  I  R  K  L  V  S  E  S  N  D  A  D  V  S  T  I  E  I  P  D  I  P  G  G  G  E  A  F  E  F  A  A  K  F  C  Y  G  I  N  F  E  I  S  T  R  N  I  A  L  L  R  C  A  A  E  Y  L  E  M  T  E  D  Y  A  V  A  N  L  V  G  R  T  E  D  Y  F  S  E  V  G  I  E  S  L  H  S  A  V  T  I  L  H  S  S  E  N  L  I  P  I  S  E  K  V  K  L  V  S  R  C  I  D  T  I  A  Y  I  A  C  K  D  N  Q  F  S  T  S  G  *  A  E  A  G  I  Y  G  L  T  S  S  M  F  S  N  P  K  S  I  V  N  W  W  S  E  D  L  T  V  L  R  I  D  F  F  Q  R  V  L  I  A  M  M  G  R  G  F  K  Q  Y  A  L  G  P  I  L  M  L  Y  A  Q  K  S  L  R  C  L  :  E  I  F  G  K  G  R  K  K  I  E  P  K  Q  E  H  E  K  R  V  V  V  E  T  I  V  G  L  L  P  R  E  K  N  A  L  S  V  S  F  C  Q  C  F  S  E  L  Q  Y  I  C  R  P  R  W  L  A  G  S  T  W  R  R  G  W  I  A  A  W  T  G  C  I  G  C  I  C  *  F  L  H  I  P  S  E  G  T  L  C  L  M  L  K  S  C  S  L  L  *  *  I  S  L  P  M  I  W  R  K  I  I  G  R  *  R  V  *  *  V  S  F  I  K  R  H  G  A  S  W  G  T  Y  G  K  L  P  C  *  N  S  F  *  P  *  S  I  H  H  K  L  H  *  S  C  *  S  H  S  R  A  R  K  D  H  *  R  W  D  V  Q  C  H  *  H  L  F  *   : G  T  S  R  S  K  R  H  G  K  K  K  G  L  R  C  Y  R  L  S  K  A  F  S  R  S  L  C  S  C  C  S  K  *  *  A  S  C  S  D  S  C  A  S  T  L  L  R  A  T  M  S  S  *  C  H  G  W  E  P  A  C  S  N  Q  T  S  C  P  C  L  F  Q  D  E  S  S  V  L  C  *  P  *  G  L  E  S  K  T  R  K  S  G  A  E  I  *  A  S  E  N  E  D  E  V  D  G  N  *  K  T  E  F  K  Q  I  S  Y  K  Q  P  F  G  H  H  S  S  I  C  W  *  T  T  F  A  K  *  L  *  L  H  E  L  S  L  E  K  A  Q  N  I  S  R  A  D  G  L  T  Q  G  K  T  R  N  K  P  K  *  R  *  T  S  F  H  I  V  I  *  A  S  Y  I  C  I  I  V  *  I  W  Y  G  L  D  S  K  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0053H21.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75492" stop="75277"/>
                    <exon start="73972" stop="73445"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>741</number_coding_nucleotides>
                  <number_encoded_amino_acids>247</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YGGKSLGDEEYNESHSLRDMERVGELMENYLAKIASDRNLSITSFINLAEVIPEQERITEDGMYSAIDIYFKAHPDLSDMERKKVCGVIDCQKLSREACAHAAQNDRLPVQTVVQVLYYEQQCLHNAMDGSQLVATKPPALVSSKMNHQFSADPEDSSLKRENQELKFELLKMKMRLMEIEKPNSNRSVTSSPLVITHPSAGKPPLPSNSNFMSSVSKKLRILVELMDSRKAKLEINQSKDRRHSIS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0053H21.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77167" stop="77073"/>
                    <exon start="76953" stop="76884"/>
                    <exon start="76504" stop="76091"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>576</number_coding_nucleotides>
                  <number_encoded_amino_acids>192</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HVDLDNEQPSTLNSMSTKKELLFSATKRTSQWIFSQEIPSDVTVNAAGISFTLHKFPLVSKSGYIRKLVSESNDADVSTIEIPDIPGGGEAFEFAAKFCYGINFEISTRNIALLRCAAEYLEMTEDYAVANLVGRTEDYFSEVGIESLHSAVTILHSSENLIPISEKVKLVSRCIDTIAYIACKDNQFSTSG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0053H21.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76090" stop="75890"/>
                    <exon start="75808" stop="75575"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>432</number_coding_nucleotides>
                  <number_encoded_amino_acids>144</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AEAGIYGLTSSMFSNPKSIVNWWSEDLTVLRIDFFQRVLIAMMGRGFKQYALGPILMLYAQKSLRCLEIFGKGRKKIEPKQEHEKRVVVETIVGLLPREKNALSVSFCQCFSELQYICRPRWLAGSTWRRGWIAAWTGCIGCIC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="78140" PGL_stop="77749"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78140" e_stop="77749"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="78140" e_stop="77749" e_length="392"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78140" stop="77749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314538" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATAGGTTTTGCTAATTCAACCAAGAAAATAGTTTAATTATGTAGGAAAGATCTTAATATGATGTGAAAATGACATTCCTGGAGGAGCCTATTGACGTCCTACACCAGCTATTCATTATTGACAATTGCCGTAGCTATCATTTGTCAGACAAATTTCAGTGGATATGCTTTCAGTCTGAGACTATTACCTAGCCAGGTCTAGGGTCCAATTAATCCGTACTAGCTTTGAACTAACATTGCAAAACTTGTCTTCACCCTTCTACTGGTGGATTTGGGTTATAGGGCAGGTGCGATCACACCTACTTTGGATACAATTGGGAACAATAACAATTAAAGTATCAAGAAACGAAATTCGATATCAGCTGGTTTGATATGTACCCCGATGGTTTTTTG</gDNA_template>
            <first_frame> I  G  F  A  N  S  T  K  K  I  V  *  L  C  R  K  D  L  N  M  M  *  K  *  H  S  W  R  S  L  L  T  S  Y  T  S  Y  S  L  L  T  I  A  V  A  I  I  C  Q  T  N  F  S  G  Y  A  F  S  L  R  L  L  P  S  Q  V  *  G  P  I  N  P  Y  *  L  *  T  N  I  A  K  L  V  F  T  L  L  L  V  D  L  G  Y  R  A  G  A  I  T  P  T  L  D  T  I  G  N  N  N  N  *  S  I  K  K  R  N  S  I  S  A  G  L  I  C  T  P  M  V  F   </first_frame>
            <second_frame>  *  V  L  L  I  Q  P  R  K  *  F  N  Y  V  G  K  I  L  I  *  C  E  N  D  I  P  G  G  A  Y  *  R  P  T  P  A  I  H  Y  *  Q  L  P  *  L  S  F  V  R  Q  I  S  V  D  M  L  S  V  *  D  Y  Y  L  A  R  S  R  V  Q  L  I  R  T  S  F  E  L  T  L  Q  N  L  S  S  P  F  Y  W  W  I  W  V  I  G  Q  V  R  S  H  L  L  W  I  Q  L  G  T  I  T  I  K  V  S  R  N  E  I  R  Y  Q  L  V  *  Y  V  P  R  W  F  F  </second_frame>
            <third_frame>   R  F  C  *  F  N  Q  E  N  S  L  I  M  *  E  R  S  *  Y  D  V  K  M  T  F  L  E  E  P  I  D  V  L  H  Q  L  F  I  I  D  N  C  R  S  Y  H  L  S  D  K  F  Q  W  I  C  F  Q  S  E  T  I  T  *  P  G  L  G  S  N  *  S  V  L  A  L  N  *  H  C  K  T  C  L  H  P  S  T  G  G  F  G  L  *  G  R  C  D  H  T  Y  F  G  Y  N  W  E  Q  *  Q  L  K  Y  Q  E  T  K  F  D  I  S  W  F  D  M  Y  P  D  G  F  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLe0053H21.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="85066" PGL_stop="91942"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85067" e_stop="85399"/>
            <exon e_start="86576" e_stop="86705"/>
            <exon e_start="87265" e_stop="87459"/>
            <exon e_start="88940" e_stop="89097"/>
            <exon e_start="89944" e_stop="90034"/>
            <exon e_start="90221" e_stop="90286"/>
            <exon e_start="90477" e_stop="90559"/>
            <exon e_start="90748" e_stop="90811"/>
            <exon e_start="90947" e_stop="91015"/>
            <exon e_start="91480" e_stop="91875"/>
            <exon e_start="91929" e_stop="91937"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.994" e_score="1.000"/>
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        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGTGGAGAGTGAAAAGGGTCCCAATAGCAGCATACAAGAGAGAGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGG : TGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAG : ATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAG : GCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCCGAATTTTACCACCCAGGGAAGGAATATAATGTTCGTGTGGCTTCAAG : ATACTTCAAGGGCCCTGAACTTCTAGTTGACTTGCAAGACTATGACTATTCTTTGGACATGTGGAGCCTTGGCTGCATGTTTGCAGGAATG : ATTTTCCGCAAGGAACCTTTCTTTTATGGCCATGATAATCAGGATCAGCTCGTCAAAATTGCAAAG : GTACTTGGGACAGATGAGTTGAATGCGTACTTGCACAAGTATCAACTAGAGCTTGATCCTCAGCTAGAGGCTATGGTTGGGAG : ACACAGTAGGAAGCCGTGGTCCAAATTTATTAATGCAGACAATCAGCATCTAGTGTCACCGGAG : GCTATAGATTATCTTGACAAGCTTCTCCGTTACGATCATCAGACTAGACTTACGGCAAAAGAAGCAATG : GCCCATCCATATTTCGGGCAAGTGAGGGCTGCTGAAACTAGCAGAATGAGGACACAGTAGCTTTCTTGTCTTGCTGTTAATGGGAAGAAAAAAAACTGTGTAATGTACCTTGTGTATCCATTTAAGTGACATTCGTGAGAACTATGTGGATTTGAACTTGAGCAGACATCTGAATTCAGGAATTACAGATCTTCATCATTGAACATTTCAAGAGAAATAGTGTTTTTTAGATTTCCTGATCGTGACCTTGATTGCAAATGGAAGTGACTTGCTGGGCGTCAAAAGTCACCCCACCCCCCCTTCCCCAAAGATACTATCTCCCTAGATGTGAACAAAAGCAGATTTTTGAAAATTAGTTCACTTTGTATATTAGTGCACTGGATTTTTCTGCATTCA : AAGAATGAA</gDNA_template>
            <first_frame> L  W  R  V  K  R  V  P  I  A  A  Y  K  R  E  Q  K  A  F  P  I  Y  G  F  F  L  K  M  V  C  E  *  S  S  V  I  A  L  A  V  A  S  N  R  S  G  A  Q  F  L  R  C  I  Y  P  A  C  V  F  F  V  V  P  F  P  K  S  D  T  F  I  N  N  S  S  V  S  D  F  R  I  N  H  V  Q  S  S  S  I  H  R  Y  Q  C  A  S  S  *  G  I  L  G  L  R  I  A  N  C  S  M  G  :  *  S  G  *  L  *  G  C  S  K  S  W  K  R  K  I  Q  *  S  F  *  R  Y  K  C  *  Q  Q  G  E  V  H  N  Q  D  P  E  T  C  *  E  E  K   : D  Q  K  R  D  K  D  I  A  K  S  L  W  W  T  K  Y  C  Q  T  P  *  Y  R  Q  R  S  A  F  K  N  S  K  L  D  F  *  V  R  E  Q  H  R  F  Q  G  F  V  P  N  A  N  R  L  *  H  T  V  L  H  I  *  A  S  Q   : G  T  R  L  L  P  F  T  G  N  N  A  Q  G  C  Q  T  S  *  R  Y  D  R  P  *  T  A  E  A  S  L  D  R  L  G  S  C  R  I  L  P  P  R  E  G  I  *  C  S  C  G  F  K  :  I  L  Q  G  P  *  T  S  S  *  L  A  R  L  *  L  F  F  G  H  V  E  P  W  L  H  V  C  R  N   : D  F  P  Q  G  T  F  L  L  W  P  *  *  S  G  S  A  R  Q  N  C  K   : G  T  W  D  R  *  V  E  C  V  L  A  Q  V  S  T  R  A  *  S  S  A  R  G  Y  G  W  E  :  T  Q  *  E  A  V  V  Q  I  Y  *  C  R  Q  S  A  S  S  V  T  G   : G  Y  R  L  S  *  Q  A  S  P  L  R  S  S  D  *  T  Y  G  K  R  S  N   : G  P  S  I  F  R  A  S  E  G  C  *  N  *  Q  N  E  D  T  V  A  F  L  S  C  C  *  W  E  E  K  K  L  C  N  V  P  C  V  S  I  *  V  T  F  V  R  T  M  W  I  *  T  *  A  D  I  *  I  Q  E  L  Q  I  F  I  I  E  H  F  K  R  N  S  V  F  *  I  S  *  S  *  P  *  L  Q  M  E  V  T  C  W  A  S  K  V  T  P  P  P  L  P  Q  R  Y  Y  L  P  R  C  E  Q  K  Q  I  F  E  N  *  F  T  L  Y  I  S  A  L  D  F  S  A  F   : K  E  *  </first_frame>
            <second_frame>  C  G  E  *  K  G  S  Q  *  Q  H  T  R  E  S  K  K  L  S  Q  S  M  A  F  S  *  K  W  C  V  S  K  V  V  L  L  L  W  R  L  H  Q  T  E  A  G  P  N  S  F  V  A  S  T  Q  P  A  S  S  L  L  S  L  F  R  N  P  I  P  L  S  I  T  L  Q  S  L  I  S  G  *  T  M  S  K  A  R  V  Y  T  D  I  N  V  L  R  P  R  E  Y  W  D  Y  E  S  L  T  V  Q  W  G :   D  Q  D  D  Y  E  V  V  R  K  V  G  R  G  K  Y  S  E  V  F  E  G  I  N  V  N  S  R  E  K  C  I  I  K  I  L  K  P  V  K  K  K  K  :  I  K  R  E  I  K  I  L  Q  N  L  C  G  G  P  N  I  V  K  L  L  D  I  V  R  D  Q  H  S  K  T  P  S  L  I  F  E  Y  V  N  S  T  D  F  K  V  L  Y  P  T  L  T  D  Y  D  I  R  Y  Y  I  Y  E  L  L  K  :  A  L  D  Y  C  H  S  Q  G  I  M  H  R  D  V  K  P  H  N  V  M  I  D  H  E  L  R  K  L  R  L  I  D  W  G  L  A  E  F  Y  H  P  G  K  E  Y  N  V  R  V  A  S  R :   Y  F  K  G  P  E  L  L  V  D  L  Q  D  Y  D  Y  S  L  D  M  W  S  L  G  C  M  F  A  G  M  :  I  F  R  K  E  P  F  F  Y  G  H  D  N  Q  D  Q  L  V  K  I  A  K  :  V  L  G  T  D  E  L  N  A  Y  L  H  K  Y  Q  L  E  L  D  P  Q  L  E  A  M  V  G  R :   H  S  R  K  P  W  S  K  F  I  N  A  D  N  Q  H  L  V  S  P  E  :  A  I  D  Y  L  D  K  L  L  R  Y  D  H  Q  T  R  L  T  A  K  E  A  M  :  A  H  P  Y  F  G  Q  V  R  A  A  E  T  S  R  M  R  T  Q  *  L  S  C  L  A  V  N  G  K  K  K  N  C  V  M  Y  L  V  Y  P  F  K  *  H  S  *  E  L  C  G  F  E  L  E  Q  T  S  E  F  R  N  Y  R  S  S  S  L  N  I  S  R  E  I  V  F  F  R  F  P  D  R  D  L  D  C  K  W  K  *  L  A  G  R  Q  K  S  P  H  P  P  F  P  K  D  T  I  S  L  D  V  N  K  S  R  F  L  K  I  S  S  L  C  I  L  V  H  W  I  F  L  H  S  :  K  N  E </second_frame>
            <third_frame>   V  E  S  E  K  G  P  N  S  S  I  Q  E  R  A  K  S  F  P  N  L  W  L  F  P  K  N  G  V  *  V  K  *  C  Y  C  S  G  G  C  I  K  Q  K  R  G  P  I  P  S  L  H  L  P  S  L  R  L  L  C  C  P  F  S  E  I  R  Y  L  Y  Q  *  L  F  S  L  *  F  P  D  K  P  C  P  K  L  E  Y  T  P  I  S  M  C  F  V  L  G  N  I  G  I  T  N  R  *  L  F  N  G   : V  I  R  M  T  M  R  L  F  E  K  L  E  E  E  N  T  V  K  F  L  K  V  *  M  L  T  A  G  R  S  A  *  S  R  S  *  N  L  L  R  R  K  R :   S  K  E  R  *  R  Y  C  K  I  S  V  V  D  Q  I  L  S  N  S  L  I  S  S  E  I  S  I  Q  K  L  Q  A  *  F  L  S  T  *  T  A  Q  I  S  R  F  C  T  Q  R  *  Q  T  M  T  Y  G  T  T  Y  M  S  F  S  R :   H  *  I  I  A  I  H  R  E  *  C  T  G  M  S  N  L  I  T  L  *  *  T  M  N  C  G  S  F  A  *  *  I  G  V  L  P  N  F  T  T  Q  G  R  N  I  M  F  V  W  L  Q   : D  T  S  R  A  L  N  F  *  L  T  C  K  T  M  T  I  L  W  T  C  G  A  L  A  A  C  L  Q  E  * :   F  S  A  R  N  L  S  F  M  A  M  I  I  R  I  S  S  S  K  L  Q  R :   Y  L  G  Q  M  S  *  M  R  T  C  T  S  I  N  *  S  L  I  L  S  *  R  L  W  L  G   : D  T  V  G  S  R  G  P  N  L  L  M  Q  T  I  S  I  *  C  H  R  R :   L  *  I  I  L  T  S  F  S  V  T  I  I  R  L  D  L  R  Q  K  K  Q  W :   P  I  H  I  S  G  K  *  G  L  L  K  L  A  E  *  G  H  S  S  F  L  V  L  L  L  M  G  R  K  K  T  V  *  C  T  L  C  I  H  L  S  D  I  R  E  N  Y  V  D  L  N  L  S  R  H  L  N  S  G  I  T  D  L  H  H  *  T  F  Q  E  K  *  C  F  L  D  F  L  I  V  T  L  I  A  N  G  S  D  L  L  G  V  K  S  H  P  T  P  P  S  P  K  I  L  S  P  *  M  *  T  K  A  D  F  *  K  L  V  H  F  V  Y  *  C  T  G  F  F  C  I  Q :   R  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0053H21.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85311" stop="85399"/>
                    <exon start="86576" stop="86705"/>
                    <exon start="87265" stop="87459"/>
                    <exon start="88940" stop="89097"/>
                    <exon start="89944" stop="90034"/>
                    <exon start="90221" stop="90286"/>
                    <exon start="90477" stop="90559"/>
                    <exon start="90748" stop="90811"/>
                    <exon start="90947" stop="91015"/>
                    <exon start="91480" stop="91539"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1002</number_coding_nucleotides>
                  <number_encoded_amino_acids>334</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMSKARVYTDINVLRPREYWDYESLTVQWGDQDDYEVVRKVGRGKYSEVFEGINVNSREKCIIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNQDQLVKIAKVLGTDELNAYLHKYQLELDPQLEAMVGRHSRKPWSKFINADNQHLVSPEAIDYLDKLLRYDHQTRLTAKEAMAHPYFGQVRAAETSRMRTQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="85066" e_stop="85399"/>
            <exon e_start="86576" e_stop="86705"/>
            <exon e_start="87265" e_stop="87459"/>
            <exon e_start="88940" e_stop="89097"/>
            <exon e_start="89944" e_stop="90034"/>
            <exon e_start="90221" e_stop="90286"/>
            <exon e_start="90477" e_stop="90559"/>
            <exon e_start="90748" e_stop="90811"/>
            <exon e_start="90947" e_stop="91015"/>
            <exon e_start="91480" e_stop="91851"/>
            <exon e_start="91929" e_stop="91942"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.273" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.568" acc_prob="0.911" e_score="1.000"/>
          <exon-intron don_prob="0.930" acc_prob="0.941" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.917" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.625" e_score="0.995"/>
          <exon-only e_score="0.643"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="85066" e_stop="85399" e_length="334"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.994">
            <gDNA_intron_boundary i_start="85400" i_stop="86575" i_length="1176"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="86576" e_stop="86705" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="0.975" acc_prob="0.273">
            <gDNA_intron_boundary i_start="86706" i_stop="87264" i_length="559"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="87265" e_stop="87459" e_length="195"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.992">
            <gDNA_intron_boundary i_start="87460" i_stop="88939" i_length="1480"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="88940" e_stop="89097" e_length="158"/>
          </exon>
          <intron i_serial="4" don_prob="0.568" acc_prob="0.911">
            <gDNA_intron_boundary i_start="89098" i_stop="89943" i_length="846"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="89944" e_stop="90034" e_length="91"/>
          </exon>
          <intron i_serial="5" don_prob="0.930" acc_prob="0.941">
            <gDNA_intron_boundary i_start="90035" i_stop="90220" i_length="186"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="90221" e_stop="90286" e_length="66"/>
          </exon>
          <intron i_serial="6" don_prob="0.987" acc_prob="0.992">
            <gDNA_intron_boundary i_start="90287" i_stop="90476" i_length="190"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="90477" e_stop="90559" e_length="83"/>
          </exon>
          <intron i_serial="7" don_prob="0.900" acc_prob="0.917">
            <gDNA_intron_boundary i_start="90560" i_stop="90747" i_length="188"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="90748" e_stop="90811" e_length="64"/>
          </exon>
          <intron i_serial="8" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="90812" i_stop="90946" i_length="135"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="90947" e_stop="91015" e_length="69"/>
          </exon>
          <intron i_serial="9" don_prob="0.992" acc_prob="0.967">
            <gDNA_intron_boundary i_start="91016" i_stop="91479" i_length="464"/>
          </intron>
          <exon e_serial="10" e_score="0.995">
            <gDNA_exon_boundary e_start="91480" e_stop="91851" e_length="372"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.625">
            <gDNA_intron_boundary i_start="91852" i_stop="91928" i_length="77"/>
          </intron>
          <exon e_serial="11" e_score="0.643">
            <gDNA_exon_boundary e_start="91929" e_stop="91942" e_length="14"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85066" stop="85399"/>
              <exon start="86576" stop="86705"/>
              <exon start="87265" stop="87459"/>
              <exon start="88940" stop="89097"/>
              <exon start="89944" stop="90034"/>
              <exon start="90221" stop="90286"/>
              <exon start="90477" stop="90559"/>
              <exon start="90748" stop="90811"/>
              <exon start="90947" stop="91015"/>
              <exon start="91480" stop="91851"/>
              <exon start="91929" stop="91942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85067" stop="85399"/>
              <exon start="86576" stop="86705"/>
              <exon start="87265" stop="87296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299917" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85075" stop="85399"/>
              <exon start="86576" stop="86669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85077" stop="85399"/>
              <exon start="86576" stop="86705"/>
              <exon start="87265" stop="87455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85086" stop="85399"/>
              <exon start="86576" stop="86680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85086" stop="85399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243453" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85098" stop="85399"/>
              <exon start="86576" stop="86705"/>
              <exon start="87265" stop="87459"/>
              <exon start="88940" stop="89097"/>
              <exon start="89944" stop="90018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85100" stop="85399"/>
              <exon start="86576" stop="86705"/>
              <exon start="87265" stop="87459"/>
              <exon start="88940" stop="89097"/>
              <exon start="89944" stop="89997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85100" stop="85399"/>
              <exon start="86576" stop="86705"/>
              <exon start="87265" stop="87434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85102" stop="85399"/>
              <exon start="86576" stop="86705"/>
              <exon start="87265" stop="87459"/>
              <exon start="88940" stop="89097"/>
              <exon start="89944" stop="89958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85103" stop="85399"/>
              <exon start="86576" stop="86705"/>
              <exon start="87265" stop="87459"/>
              <exon start="88940" stop="89004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315527" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85104" stop="85399"/>
              <exon start="86576" stop="86705"/>
              <exon start="87265" stop="87459"/>
              <exon start="88940" stop="89097"/>
              <exon start="89944" stop="90022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85104" stop="85399"/>
              <exon start="86576" stop="86705"/>
              <exon start="87265" stop="87459"/>
              <exon start="88940" stop="89097"/>
              <exon start="89944" stop="90018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85105" stop="85399"/>
              <exon start="86576" stop="86671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279335" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85106" stop="85399"/>
              <exon start="86576" stop="86705"/>
              <exon start="87265" stop="87379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85107" stop="85399"/>
              <exon start="86576" stop="86705"/>
              <exon start="87265" stop="87452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85109" stop="85399"/>
              <exon start="86576" stop="86705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85110" stop="85399"/>
              <exon start="86576" stop="86705"/>
              <exon start="87265" stop="87389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85113" stop="85399"/>
              <exon start="86576" stop="86705"/>
              <exon start="87265" stop="87447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321071" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85113" stop="85399"/>
              <exon start="86576" stop="86705"/>
              <exon start="87265" stop="87390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85113" stop="85399"/>
              <exon start="86576" stop="86705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330170" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85114" stop="85399"/>
              <exon start="86576" stop="86705"/>
              <exon start="87265" stop="87301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85116" stop="85399"/>
              <exon start="86576" stop="86705"/>
              <exon start="87265" stop="87459"/>
              <exon start="88940" stop="89080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85159" stop="85399"/>
              <exon start="86576" stop="86705"/>
              <exon start="87265" stop="87452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85159" stop="85399"/>
              <exon start="86576" stop="86705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85160" stop="85399"/>
              <exon start="86576" stop="86705"/>
              <exon start="87265" stop="87459"/>
              <exon start="88940" stop="89017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85160" stop="85399"/>
              <exon start="86576" stop="86705"/>
              <exon start="87265" stop="87459"/>
              <exon start="88940" stop="89017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85189" stop="85399"/>
              <exon start="86576" stop="86705"/>
              <exon start="87265" stop="87459"/>
              <exon start="88940" stop="89097"/>
              <exon start="89944" stop="90017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452419" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85189" stop="85399"/>
              <exon start="86576" stop="86705"/>
              <exon start="87265" stop="87459"/>
              <exon start="88940" stop="89073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342660" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85189" stop="85399"/>
              <exon start="86576" stop="86705"/>
              <exon start="87265" stop="87459"/>
              <exon start="88940" stop="89052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452500" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85210" stop="85399"/>
              <exon start="86576" stop="86705"/>
              <exon start="87265" stop="87459"/>
              <exon start="88940" stop="89052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86578" stop="86705"/>
              <exon start="87265" stop="87459"/>
              <exon start="88940" stop="89097"/>
              <exon start="89944" stop="90034"/>
              <exon start="90221" stop="90286"/>
              <exon start="90477" stop="90539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86608" stop="86705"/>
              <exon start="87265" stop="87459"/>
              <exon start="88940" stop="89080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467784" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86609" stop="86705"/>
              <exon start="87265" stop="87459"/>
              <exon start="88940" stop="89097"/>
              <exon start="89944" stop="90034"/>
              <exon start="90221" stop="90286"/>
              <exon start="90477" stop="90500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86631" stop="86705"/>
              <exon start="87265" stop="87459"/>
              <exon start="88940" stop="89097"/>
              <exon start="89944" stop="90034"/>
              <exon start="90221" stop="90225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86631" stop="86705"/>
              <exon start="87265" stop="87459"/>
              <exon start="88940" stop="89097"/>
              <exon start="89944" stop="90011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252366" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86631" stop="86705"/>
              <exon start="87265" stop="87459"/>
              <exon start="88940" stop="89081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395258" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86631" stop="86705"/>
              <exon start="87265" stop="87459"/>
              <exon start="88940" stop="89012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86663" stop="86705"/>
              <exon start="87265" stop="87459"/>
              <exon start="88940" stop="89097"/>
              <exon start="89944" stop="90034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87340" stop="87459"/>
              <exon start="88940" stop="89097"/>
              <exon start="89944" stop="90034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87401" stop="87459"/>
              <exon start="88940" stop="89097"/>
              <exon start="89944" stop="90034"/>
              <exon start="90221" stop="90286"/>
              <exon start="90477" stop="90559"/>
              <exon start="90748" stop="90787"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619679" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88944" stop="89097"/>
              <exon start="89944" stop="90034"/>
              <exon start="90221" stop="90286"/>
              <exon start="90477" stop="90559"/>
              <exon start="90748" stop="90811"/>
              <exon start="90947" stop="91015"/>
              <exon start="91480" stop="91709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89017" stop="89097"/>
              <exon start="89944" stop="90034"/>
              <exon start="90221" stop="90286"/>
              <exon start="90477" stop="90559"/>
              <exon start="90748" stop="90811"/>
              <exon start="90947" stop="91015"/>
              <exon start="91480" stop="91702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546683" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90018" stop="90034"/>
              <exon start="90221" stop="90286"/>
              <exon start="90477" stop="90559"/>
              <exon start="90748" stop="90811"/>
              <exon start="90947" stop="91015"/>
              <exon start="91480" stop="91687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255943" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90505" stop="90559"/>
              <exon start="90748" stop="90811"/>
              <exon start="90947" stop="91015"/>
              <exon start="91480" stop="91698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90791" stop="90811"/>
              <exon start="90947" stop="91015"/>
              <exon start="91480" stop="91763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90791" stop="90811"/>
              <exon start="90947" stop="91015"/>
              <exon start="91480" stop="91763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420271" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90791" stop="90811"/>
              <exon start="90947" stop="91015"/>
              <exon start="91480" stop="91763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405996" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTGTGGAGAGTGAAAAGGGTCCCAATAGCAGCATACAAGAGAGAGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGG : TGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAG : ATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAG : GCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCCGAATTTTACCACCCAGGGAAGGAATATAATGTTCGTGTGGCTTCAAG : ATACTTCAAGGGCCCTGAACTTCTAGTTGACTTGCAAGACTATGACTATTCTTTGGACATGTGGAGCCTTGGCTGCATGTTTGCAGGAATG : ATTTTCCGCAAGGAACCTTTCTTTTATGGCCATGATAATCAGGATCAGCTCGTCAAAATTGCAAAG : GTACTTGGGACAGATGAGTTGAATGCGTACTTGCACAAGTATCAACTAGAGCTTGATCCTCAGCTAGAGGCTATGGTTGGGAG : ACACAGTAGGAAGCCGTGGTCCAAATTTATTAATGCAGACAATCAGCATCTAGTGTCACCGGAG : GCTATAGATTATCTTGACAAGCTTCTCCGTTACGATCATCAGACTAGACTTACGGCAAAAGAAGCAATG : GCCCATCCATATTTCGGGCAAGTGAGGGCTGCTGAAACTAGCAGAATGAGGACACAGTAGCTTTCTTGTCTTGCTGTTAATGGGAAGAAAAAAAACTGTGTAATGTACCTTGTGTATCCATTTAAGTGACATTCGTGAGAACTATGTGGATTTGAACTTGAGCAGACATCTGAATTCAGGAATTACAGATCTTCATCATTGAACATTTCAAGAGAAATAGTGTTTTTTAGATTTCCTGATCGTGACCTTGATTGCAAATGGAAGTGACTTGCTGGGCGTCAAAAGTCACCCCACCCCCCCTTCCCCAAAGATACTATCTCCCTAGATGTGAACAAAAGCAGATTTTTGAAAATTAGTTCACTTTGTATATTA : AAGAATGAAGAGAA</gDNA_template>
            <first_frame> P  V  E  S  E  K  G  P  N  S  S  I  Q  E  R  A  K  S  F  P  N  L  W  L  F  P  K  N  G  V  *  V  K  *  C  Y  C  S  G  G  C  I  K  Q  K  R  G  P  I  P  S  L  H  L  P  S  L  R  L  L  C  C  P  F  S  E  I  R  Y  L  Y  Q  *  L  F  S  L  *  F  P  D  K  P  C  P  K  L  E  Y  T  P  I  S  M  C  F  V  L  G  N  I  G  I  T  N  R  *  L  F  N  G   : V  I  R  M  T  M  R  L  F  E  K  L  E  E  E  N  T  V  K  F  L  K  V  *  M  L  T  A  G  R  S  A  *  S  R  S  *  N  L  L  R  R  K  R :   S  K  E  R  *  R  Y  C  K  I  S  V  V  D  Q  I  L  S  N  S  L  I  S  S  E  I  S  I  Q  K  L  Q  A  *  F  L  S  T  *  T  A  Q  I  S  R  F  C  T  Q  R  *  Q  T  M  T  Y  G  T  T  Y  M  S  F  S  R :   H  *  I  I  A  I  H  R  E  *  C  T  G  M  S  N  L  I  T  L  *  *  T  M  N  C  G  S  F  A  *  *  I  G  V  L  P  N  F  T  T  Q  G  R  N  I  M  F  V  W  L  Q   : D  T  S  R  A  L  N  F  *  L  T  C  K  T  M  T  I  L  W  T  C  G  A  L  A  A  C  L  Q  E  * :   F  S  A  R  N  L  S  F  M  A  M  I  I  R  I  S  S  S  K  L  Q  R :   Y  L  G  Q  M  S  *  M  R  T  C  T  S  I  N  *  S  L  I  L  S  *  R  L  W  L  G   : D  T  V  G  S  R  G  P  N  L  L  M  Q  T  I  S  I  *  C  H  R  R :   L  *  I  I  L  T  S  F  S  V  T  I  I  R  L  D  L  R  Q  K  K  Q  W :   P  I  H  I  S  G  K  *  G  L  L  K  L  A  E  *  G  H  S  S  F  L  V  L  L  L  M  G  R  K  K  T  V  *  C  T  L  C  I  H  L  S  D  I  R  E  N  Y  V  D  L  N  L  S  R  H  L  N  S  G  I  T  D  L  H  H  *  T  F  Q  E  K  *  C  F  L  D  F  L  I  V  T  L  I  A  N  G  S  D  L  L  G  V  K  S  H  P  T  P  P  S  P  K  I  L  S  P  *  M  *  T  K  A  D  F  *  K  L  V  H  F  V  Y  * :   R  M  K  R  </first_frame>
            <second_frame>  L  W  R  V  K  R  V  P  I  A  A  Y  K  R  E  Q  K  A  F  P  I  Y  G  F  F  L  K  M  V  C  E  *  S  S  V  I  A  L  A  V  A  S  N  R  S  G  A  Q  F  L  R  C  I  Y  P  A  C  V  F  F  V  V  P  F  P  K  S  D  T  F  I  N  N  S  S  V  S  D  F  R  I  N  H  V  Q  S  S  S  I  H  R  Y  Q  C  A  S  S  *  G  I  L  G  L  R  I  A  N  C  S  M  G  :  *  S  G  *  L  *  G  C  S  K  S  W  K  R  K  I  Q  *  S  F  *  R  Y  K  C  *  Q  Q  G  E  V  H  N  Q  D  P  E  T  C  *  E  E  K   : D  Q  K  R  D  K  D  I  A  K  S  L  W  W  T  K  Y  C  Q  T  P  *  Y  R  Q  R  S  A  F  K  N  S  K  L  D  F  *  V  R  E  Q  H  R  F  Q  G  F  V  P  N  A  N  R  L  *  H  T  V  L  H  I  *  A  S  Q   : G  T  R  L  L  P  F  T  G  N  N  A  Q  G  C  Q  T  S  *  R  Y  D  R  P  *  T  A  E  A  S  L  D  R  L  G  S  C  R  I  L  P  P  R  E  G  I  *  C  S  C  G  F  K  :  I  L  Q  G  P  *  T  S  S  *  L  A  R  L  *  L  F  F  G  H  V  E  P  W  L  H  V  C  R  N   : D  F  P  Q  G  T  F  L  L  W  P  *  *  S  G  S  A  R  Q  N  C  K   : G  T  W  D  R  *  V  E  C  V  L  A  Q  V  S  T  R  A  *  S  S  A  R  G  Y  G  W  E  :  T  Q  *  E  A  V  V  Q  I  Y  *  C  R  Q  S  A  S  S  V  T  G   : G  Y  R  L  S  *  Q  A  S  P  L  R  S  S  D  *  T  Y  G  K  R  S  N   : G  P  S  I  F  R  A  S  E  G  C  *  N  *  Q  N  E  D  T  V  A  F  L  S  C  C  *  W  E  E  K  K  L  C  N  V  P  C  V  S  I  *  V  T  F  V  R  T  M  W  I  *  T  *  A  D  I  *  I  Q  E  L  Q  I  F  I  I  E  H  F  K  R  N  S  V  F  *  I  S  *  S  *  P  *  L  Q  M  E  V  T  C  W  A  S  K  V  T  P  P  P  L  P  Q  R  Y  Y  L  P  R  C  E  Q  K  Q  I  F  E  N  *  F  T  L  Y  I   : K  E  *  R  E </second_frame>
            <third_frame>   C  G  E  *  K  G  S  Q  *  Q  H  T  R  E  S  K  K  L  S  Q  S  M  A  F  S  *  K  W  C  V  S  K  V  V  L  L  L  W  R  L  H  Q  T  E  A  G  P  N  S  F  V  A  S  T  Q  P  A  S  S  L  L  S  L  F  R  N  P  I  P  L  S  I  T  L  Q  S  L  I  S  G  *  T  M  S  K  A  R  V  Y  T  D  I  N  V  L  R  P  R  E  Y  W  D  Y  E  S  L  T  V  Q  W  G :   D  Q  D  D  Y  E  V  V  R  K  V  G  R  G  K  Y  S  E  V  F  E  G  I  N  V  N  S  R  E  K  C  I  I  K  I  L  K  P  V  K  K  K  K  :  I  K  R  E  I  K  I  L  Q  N  L  C  G  G  P  N  I  V  K  L  L  D  I  V  R  D  Q  H  S  K  T  P  S  L  I  F  E  Y  V  N  S  T  D  F  K  V  L  Y  P  T  L  T  D  Y  D  I  R  Y  Y  I  Y  E  L  L  K  :  A  L  D  Y  C  H  S  Q  G  I  M  H  R  D  V  K  P  H  N  V  M  I  D  H  E  L  R  K  L  R  L  I  D  W  G  L  A  E  F  Y  H  P  G  K  E  Y  N  V  R  V  A  S  R :   Y  F  K  G  P  E  L  L  V  D  L  Q  D  Y  D  Y  S  L  D  M  W  S  L  G  C  M  F  A  G  M  :  I  F  R  K  E  P  F  F  Y  G  H  D  N  Q  D  Q  L  V  K  I  A  K  :  V  L  G  T  D  E  L  N  A  Y  L  H  K  Y  Q  L  E  L  D  P  Q  L  E  A  M  V  G  R :   H  S  R  K  P  W  S  K  F  I  N  A  D  N  Q  H  L  V  S  P  E  :  A  I  D  Y  L  D  K  L  L  R  Y  D  H  Q  T  R  L  T  A  K  E  A  M  :  A  H  P  Y  F  G  Q  V  R  A  A  E  T  S  R  M  R  T  Q  *  L  S  C  L  A  V  N  G  K  K  K  N  C  V  M  Y  L  V  Y  P  F  K  *  H  S  *  E  L  C  G  F  E  L  E  Q  T  S  E  F  R  N  Y  R  S  S  S  L  N  I  S  R  E  I  V  F  F  R  F  P  D  R  D  L  D  C  K  W  K  *  L  A  G  R  Q  K  S  P  H  P  P  F  P  K  D  T  I  S  L  D  V  N  K  S  R  F  L  K  I  S  S  L  C  I  L  :  K  N  E  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0053H21.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85311" stop="85399"/>
                    <exon start="86576" stop="86705"/>
                    <exon start="87265" stop="87459"/>
                    <exon start="88940" stop="89097"/>
                    <exon start="89944" stop="90034"/>
                    <exon start="90221" stop="90286"/>
                    <exon start="90477" stop="90559"/>
                    <exon start="90748" stop="90811"/>
                    <exon start="90947" stop="91015"/>
                    <exon start="91480" stop="91539"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1002</number_coding_nucleotides>
                  <number_encoded_amino_acids>334</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMSKARVYTDINVLRPREYWDYESLTVQWGDQDDYEVVRKVGRGKYSEVFEGINVNSREKCIIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNQDQLVKIAKVLGTDELNAYLHKYQLELDPQLEAMVGRHSRKPWSKFINADNQHLVSPEAIDYLDKLLRYDHQTRLTAKEAMAHPYFGQVRAAETSRMRTQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="85067" e_stop="85399"/>
            <exon e_start="86576" e_stop="86705"/>
            <exon e_start="87265" e_stop="87459"/>
            <exon e_start="88940" e_stop="89097"/>
            <exon e_start="89944" e_stop="90034"/>
            <exon e_start="90221" e_stop="90286"/>
            <exon e_start="90477" e_stop="90559"/>
            <exon e_start="90748" e_stop="90811"/>
            <exon e_start="90947" e_stop="91015"/>
            <exon e_start="91480" e_stop="91698"/>
            <exon e_start="91929" e_stop="91937"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.273" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.568" acc_prob="0.911" e_score="1.000"/>
          <exon-intron don_prob="0.930" acc_prob="0.941" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.917" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.625" e_score="0.991"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="85067" e_stop="85399" e_length="333"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.994">
            <gDNA_intron_boundary i_start="85400" i_stop="86575" i_length="1176"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="86576" e_stop="86705" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="0.975" acc_prob="0.273">
            <gDNA_intron_boundary i_start="86706" i_stop="87264" i_length="559"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="87265" e_stop="87459" e_length="195"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.992">
            <gDNA_intron_boundary i_start="87460" i_stop="88939" i_length="1480"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="88940" e_stop="89097" e_length="158"/>
          </exon>
          <intron i_serial="4" don_prob="0.568" acc_prob="0.911">
            <gDNA_intron_boundary i_start="89098" i_stop="89943" i_length="846"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="89944" e_stop="90034" e_length="91"/>
          </exon>
          <intron i_serial="5" don_prob="0.930" acc_prob="0.941">
            <gDNA_intron_boundary i_start="90035" i_stop="90220" i_length="186"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="90221" e_stop="90286" e_length="66"/>
          </exon>
          <intron i_serial="6" don_prob="0.987" acc_prob="0.992">
            <gDNA_intron_boundary i_start="90287" i_stop="90476" i_length="190"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="90477" e_stop="90559" e_length="83"/>
          </exon>
          <intron i_serial="7" don_prob="0.900" acc_prob="0.917">
            <gDNA_intron_boundary i_start="90560" i_stop="90747" i_length="188"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="90748" e_stop="90811" e_length="64"/>
          </exon>
          <intron i_serial="8" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="90812" i_stop="90946" i_length="135"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="90947" e_stop="91015" e_length="69"/>
          </exon>
          <intron i_serial="9" don_prob="0.992" acc_prob="0.967">
            <gDNA_intron_boundary i_start="91016" i_stop="91479" i_length="464"/>
          </intron>
          <exon e_serial="10" e_score="0.991">
            <gDNA_exon_boundary e_start="91480" e_stop="91698" e_length="219"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.625">
            <gDNA_intron_boundary i_start="91699" i_stop="91928" i_length="230"/>
          </intron>
          <exon e_serial="11" e_score="0.667">
            <gDNA_exon_boundary e_start="91929" e_stop="91937" e_length="9"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85067" stop="85399"/>
              <exon start="86576" stop="86705"/>
              <exon start="87265" stop="87296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299917" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85075" stop="85399"/>
              <exon start="86576" stop="86669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85077" stop="85399"/>
              <exon start="86576" stop="86705"/>
              <exon start="87265" stop="87455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85086" stop="85399"/>
              <exon start="86576" stop="86680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85086" stop="85399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243453" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85098" stop="85399"/>
              <exon start="86576" stop="86705"/>
              <exon start="87265" stop="87459"/>
              <exon start="88940" stop="89097"/>
              <exon start="89944" stop="90018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85100" stop="85399"/>
              <exon start="86576" stop="86705"/>
              <exon start="87265" stop="87459"/>
              <exon start="88940" stop="89097"/>
              <exon start="89944" stop="89997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85100" stop="85399"/>
              <exon start="86576" stop="86705"/>
              <exon start="87265" stop="87434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85102" stop="85399"/>
              <exon start="86576" stop="86705"/>
              <exon start="87265" stop="87459"/>
              <exon start="88940" stop="89097"/>
              <exon start="89944" stop="89958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85103" stop="85399"/>
              <exon start="86576" stop="86705"/>
              <exon start="87265" stop="87459"/>
              <exon start="88940" stop="89004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315527" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85104" stop="85399"/>
              <exon start="86576" stop="86705"/>
              <exon start="87265" stop="87459"/>
              <exon start="88940" stop="89097"/>
              <exon start="89944" stop="90022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85104" stop="85399"/>
              <exon start="86576" stop="86705"/>
              <exon start="87265" stop="87459"/>
              <exon start="88940" stop="89097"/>
              <exon start="89944" stop="90018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85105" stop="85399"/>
              <exon start="86576" stop="86671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279335" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85106" stop="85399"/>
              <exon start="86576" stop="86705"/>
              <exon start="87265" stop="87379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85107" stop="85399"/>
              <exon start="86576" stop="86705"/>
              <exon start="87265" stop="87452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85109" stop="85399"/>
              <exon start="86576" stop="86705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85110" stop="85399"/>
              <exon start="86576" stop="86705"/>
              <exon start="87265" stop="87389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85113" stop="85399"/>
              <exon start="86576" stop="86705"/>
              <exon start="87265" stop="87447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321071" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85113" stop="85399"/>
              <exon start="86576" stop="86705"/>
              <exon start="87265" stop="87390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85113" stop="85399"/>
              <exon start="86576" stop="86705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330170" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85114" stop="85399"/>
              <exon start="86576" stop="86705"/>
              <exon start="87265" stop="87301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85116" stop="85399"/>
              <exon start="86576" stop="86705"/>
              <exon start="87265" stop="87459"/>
              <exon start="88940" stop="89080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85159" stop="85399"/>
              <exon start="86576" stop="86705"/>
              <exon start="87265" stop="87452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85159" stop="85399"/>
              <exon start="86576" stop="86705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85160" stop="85399"/>
              <exon start="86576" stop="86705"/>
              <exon start="87265" stop="87459"/>
              <exon start="88940" stop="89017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85160" stop="85399"/>
              <exon start="86576" stop="86705"/>
              <exon start="87265" stop="87459"/>
              <exon start="88940" stop="89017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85189" stop="85399"/>
              <exon start="86576" stop="86705"/>
              <exon start="87265" stop="87459"/>
              <exon start="88940" stop="89097"/>
              <exon start="89944" stop="90017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452419" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85189" stop="85399"/>
              <exon start="86576" stop="86705"/>
              <exon start="87265" stop="87459"/>
              <exon start="88940" stop="89073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342660" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85189" stop="85399"/>
              <exon start="86576" stop="86705"/>
              <exon start="87265" stop="87459"/>
              <exon start="88940" stop="89052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452500" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85210" stop="85399"/>
              <exon start="86576" stop="86705"/>
              <exon start="87265" stop="87459"/>
              <exon start="88940" stop="89052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86578" stop="86705"/>
              <exon start="87265" stop="87459"/>
              <exon start="88940" stop="89097"/>
              <exon start="89944" stop="90034"/>
              <exon start="90221" stop="90286"/>
              <exon start="90477" stop="90539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86608" stop="86705"/>
              <exon start="87265" stop="87459"/>
              <exon start="88940" stop="89080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467784" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86609" stop="86705"/>
              <exon start="87265" stop="87459"/>
              <exon start="88940" stop="89097"/>
              <exon start="89944" stop="90034"/>
              <exon start="90221" stop="90286"/>
              <exon start="90477" stop="90500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86631" stop="86705"/>
              <exon start="87265" stop="87459"/>
              <exon start="88940" stop="89097"/>
              <exon start="89944" stop="90034"/>
              <exon start="90221" stop="90225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86631" stop="86705"/>
              <exon start="87265" stop="87459"/>
              <exon start="88940" stop="89097"/>
              <exon start="89944" stop="90011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252366" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86631" stop="86705"/>
              <exon start="87265" stop="87459"/>
              <exon start="88940" stop="89081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395258" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86631" stop="86705"/>
              <exon start="87265" stop="87459"/>
              <exon start="88940" stop="89012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86663" stop="86705"/>
              <exon start="87265" stop="87459"/>
              <exon start="88940" stop="89097"/>
              <exon start="89944" stop="90034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87340" stop="87459"/>
              <exon start="88940" stop="89097"/>
              <exon start="89944" stop="90034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87401" stop="87459"/>
              <exon start="88940" stop="89097"/>
              <exon start="89944" stop="90034"/>
              <exon start="90221" stop="90286"/>
              <exon start="90477" stop="90559"/>
              <exon start="90748" stop="90787"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619679" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90018" stop="90034"/>
              <exon start="90221" stop="90286"/>
              <exon start="90477" stop="90559"/>
              <exon start="90748" stop="90811"/>
              <exon start="90947" stop="91015"/>
              <exon start="91480" stop="91687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255943" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90505" stop="90559"/>
              <exon start="90748" stop="90811"/>
              <exon start="90947" stop="91015"/>
              <exon start="91480" stop="91698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90790" stop="90811"/>
              <exon start="90947" stop="91015"/>
              <exon start="91480" stop="91698"/>
              <exon start="91929" stop="91937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215366" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGTGGAGAGTGAAAAGGGTCCCAATAGCAGCATACAAGAGAGAGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGG : TGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAG : ATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAG : GCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCCGAATTTTACCACCCAGGGAAGGAATATAATGTTCGTGTGGCTTCAAG : ATACTTCAAGGGCCCTGAACTTCTAGTTGACTTGCAAGACTATGACTATTCTTTGGACATGTGGAGCCTTGGCTGCATGTTTGCAGGAATG : ATTTTCCGCAAGGAACCTTTCTTTTATGGCCATGATAATCAGGATCAGCTCGTCAAAATTGCAAAG : GTACTTGGGACAGATGAGTTGAATGCGTACTTGCACAAGTATCAACTAGAGCTTGATCCTCAGCTAGAGGCTATGGTTGGGAG : ACACAGTAGGAAGCCGTGGTCCAAATTTATTAATGCAGACAATCAGCATCTAGTGTCACCGGAG : GCTATAGATTATCTTGACAAGCTTCTCCGTTACGATCATCAGACTAGACTTACGGCAAAAGAAGCAATG : GCCCATCCATATTTCGGGCAAGTGAGGGCTGCTGAAACTAGCAGAATGAGGACACAGTAGCTTTCTTGTCTTGCTGTTAATGGGAAGAAAAAAAACTGTGTAATGTACCTTGTGTATCCATTTAAGTGACATTCGTGAGAACTATGTGGATTTGAACTTGAGCAGACATCTGAATTCAGGAATTACAGATCTTCATCATTGAACATTTCAAGAGAAATA : AAGAATGAA</gDNA_template>
            <first_frame> L  W  R  V  K  R  V  P  I  A  A  Y  K  R  E  Q  K  A  F  P  I  Y  G  F  F  L  K  M  V  C  E  *  S  S  V  I  A  L  A  V  A  S  N  R  S  G  A  Q  F  L  R  C  I  Y  P  A  C  V  F  F  V  V  P  F  P  K  S  D  T  F  I  N  N  S  S  V  S  D  F  R  I  N  H  V  Q  S  S  S  I  H  R  Y  Q  C  A  S  S  *  G  I  L  G  L  R  I  A  N  C  S  M  G  :  *  S  G  *  L  *  G  C  S  K  S  W  K  R  K  I  Q  *  S  F  *  R  Y  K  C  *  Q  Q  G  E  V  H  N  Q  D  P  E  T  C  *  E  E  K   : D  Q  K  R  D  K  D  I  A  K  S  L  W  W  T  K  Y  C  Q  T  P  *  Y  R  Q  R  S  A  F  K  N  S  K  L  D  F  *  V  R  E  Q  H  R  F  Q  G  F  V  P  N  A  N  R  L  *  H  T  V  L  H  I  *  A  S  Q   : G  T  R  L  L  P  F  T  G  N  N  A  Q  G  C  Q  T  S  *  R  Y  D  R  P  *  T  A  E  A  S  L  D  R  L  G  S  C  R  I  L  P  P  R  E  G  I  *  C  S  C  G  F  K  :  I  L  Q  G  P  *  T  S  S  *  L  A  R  L  *  L  F  F  G  H  V  E  P  W  L  H  V  C  R  N   : D  F  P  Q  G  T  F  L  L  W  P  *  *  S  G  S  A  R  Q  N  C  K   : G  T  W  D  R  *  V  E  C  V  L  A  Q  V  S  T  R  A  *  S  S  A  R  G  Y  G  W  E  :  T  Q  *  E  A  V  V  Q  I  Y  *  C  R  Q  S  A  S  S  V  T  G   : G  Y  R  L  S  *  Q  A  S  P  L  R  S  S  D  *  T  Y  G  K  R  S  N   : G  P  S  I  F  R  A  S  E  G  C  *  N  *  Q  N  E  D  T  V  A  F  L  S  C  C  *  W  E  E  K  K  L  C  N  V  P  C  V  S  I  *  V  T  F  V  R  T  M  W  I  *  T  *  A  D  I  *  I  Q  E  L  Q  I  F  I  I  E  H  F  K  R  N   : K  E  *  </first_frame>
            <second_frame>  C  G  E  *  K  G  S  Q  *  Q  H  T  R  E  S  K  K  L  S  Q  S  M  A  F  S  *  K  W  C  V  S  K  V  V  L  L  L  W  R  L  H  Q  T  E  A  G  P  N  S  F  V  A  S  T  Q  P  A  S  S  L  L  S  L  F  R  N  P  I  P  L  S  I  T  L  Q  S  L  I  S  G  *  T  M  S  K  A  R  V  Y  T  D  I  N  V  L  R  P  R  E  Y  W  D  Y  E  S  L  T  V  Q  W  G :   D  Q  D  D  Y  E  V  V  R  K  V  G  R  G  K  Y  S  E  V  F  E  G  I  N  V  N  S  R  E  K  C  I  I  K  I  L  K  P  V  K  K  K  K  :  I  K  R  E  I  K  I  L  Q  N  L  C  G  G  P  N  I  V  K  L  L  D  I  V  R  D  Q  H  S  K  T  P  S  L  I  F  E  Y  V  N  S  T  D  F  K  V  L  Y  P  T  L  T  D  Y  D  I  R  Y  Y  I  Y  E  L  L  K  :  A  L  D  Y  C  H  S  Q  G  I  M  H  R  D  V  K  P  H  N  V  M  I  D  H  E  L  R  K  L  R  L  I  D  W  G  L  A  E  F  Y  H  P  G  K  E  Y  N  V  R  V  A  S  R :   Y  F  K  G  P  E  L  L  V  D  L  Q  D  Y  D  Y  S  L  D  M  W  S  L  G  C  M  F  A  G  M  :  I  F  R  K  E  P  F  F  Y  G  H  D  N  Q  D  Q  L  V  K  I  A  K  :  V  L  G  T  D  E  L  N  A  Y  L  H  K  Y  Q  L  E  L  D  P  Q  L  E  A  M  V  G  R :   H  S  R  K  P  W  S  K  F  I  N  A  D  N  Q  H  L  V  S  P  E  :  A  I  D  Y  L  D  K  L  L  R  Y  D  H  Q  T  R  L  T  A  K  E  A  M  :  A  H  P  Y  F  G  Q  V  R  A  A  E  T  S  R  M  R  T  Q  *  L  S  C  L  A  V  N  G  K  K  K  N  C  V  M  Y  L  V  Y  P  F  K  *  H  S  *  E  L  C  G  F  E  L  E  Q  T  S  E  F  R  N  Y  R  S  S  S  L  N  I  S  R  E  I  :  K  N  E </second_frame>
            <third_frame>   V  E  S  E  K  G  P  N  S  S  I  Q  E  R  A  K  S  F  P  N  L  W  L  F  P  K  N  G  V  *  V  K  *  C  Y  C  S  G  G  C  I  K  Q  K  R  G  P  I  P  S  L  H  L  P  S  L  R  L  L  C  C  P  F  S  E  I  R  Y  L  Y  Q  *  L  F  S  L  *  F  P  D  K  P  C  P  K  L  E  Y  T  P  I  S  M  C  F  V  L  G  N  I  G  I  T  N  R  *  L  F  N  G   : V  I  R  M  T  M  R  L  F  E  K  L  E  E  E  N  T  V  K  F  L  K  V  *  M  L  T  A  G  R  S  A  *  S  R  S  *  N  L  L  R  R  K  R :   S  K  E  R  *  R  Y  C  K  I  S  V  V  D  Q  I  L  S  N  S  L  I  S  S  E  I  S  I  Q  K  L  Q  A  *  F  L  S  T  *  T  A  Q  I  S  R  F  C  T  Q  R  *  Q  T  M  T  Y  G  T  T  Y  M  S  F  S  R :   H  *  I  I  A  I  H  R  E  *  C  T  G  M  S  N  L  I  T  L  *  *  T  M  N  C  G  S  F  A  *  *  I  G  V  L  P  N  F  T  T  Q  G  R  N  I  M  F  V  W  L  Q   : D  T  S  R  A  L  N  F  *  L  T  C  K  T  M  T  I  L  W  T  C  G  A  L  A  A  C  L  Q  E  * :   F  S  A  R  N  L  S  F  M  A  M  I  I  R  I  S  S  S  K  L  Q  R :   Y  L  G  Q  M  S  *  M  R  T  C  T  S  I  N  *  S  L  I  L  S  *  R  L  W  L  G   : D  T  V  G  S  R  G  P  N  L  L  M  Q  T  I  S  I  *  C  H  R  R :   L  *  I  I  L  T  S  F  S  V  T  I  I  R  L  D  L  R  Q  K  K  Q  W :   P  I  H  I  S  G  K  *  G  L  L  K  L  A  E  *  G  H  S  S  F  L  V  L  L  L  M  G  R  K  K  T  V  *  C  T  L  C  I  H  L  S  D  I  R  E  N  Y  V  D  L  N  L  S  R  H  L  N  S  G  I  T  D  L  H  H  *  T  F  Q  E  K  * :   R  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0053H21.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85311" stop="85399"/>
                    <exon start="86576" stop="86705"/>
                    <exon start="87265" stop="87459"/>
                    <exon start="88940" stop="89097"/>
                    <exon start="89944" stop="90034"/>
                    <exon start="90221" stop="90286"/>
                    <exon start="90477" stop="90559"/>
                    <exon start="90748" stop="90811"/>
                    <exon start="90947" stop="91015"/>
                    <exon start="91480" stop="91539"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1002</number_coding_nucleotides>
                  <number_encoded_amino_acids>334</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMSKARVYTDINVLRPREYWDYESLTVQWGDQDDYEVVRKVGRGKYSEVFEGINVNSREKCIIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNQDQLVKIAKVLGTDELNAYLHKYQLELDPQLEAMVGRHSRKPWSKFINADNQHLVSPEAIDYLDKLLRYDHQTRLTAKEAMAHPYFGQVRAAETSRMRTQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="87182" e_stop="87459"/>
            <exon e_start="88940" e_stop="89097"/>
            <exon e_start="89944" e_stop="90034"/>
            <exon e_start="90221" e_stop="90286"/>
            <exon e_start="90477" e_stop="90559"/>
            <exon e_start="90748" e_stop="90811"/>
            <exon e_start="90947" e_stop="91015"/>
            <exon e_start="91480" e_stop="91875"/>
            <exon e_start="91929" e_stop="91937"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.992" e_score="0.928"/>
          <exon-intron don_prob="0.568" acc_prob="0.911" e_score="1.000"/>
          <exon-intron don_prob="0.930" acc_prob="0.941" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.917" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.625" e_score="1.000"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.928">
            <gDNA_exon_boundary e_start="87182" e_stop="87459" e_length="278"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.992">
            <gDNA_intron_boundary i_start="87460" i_stop="88939" i_length="1480"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="88940" e_stop="89097" e_length="158"/>
          </exon>
          <intron i_serial="2" don_prob="0.568" acc_prob="0.911">
            <gDNA_intron_boundary i_start="89098" i_stop="89943" i_length="846"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="89944" e_stop="90034" e_length="91"/>
          </exon>
          <intron i_serial="3" don_prob="0.930" acc_prob="0.941">
            <gDNA_intron_boundary i_start="90035" i_stop="90220" i_length="186"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="90221" e_stop="90286" e_length="66"/>
          </exon>
          <intron i_serial="4" don_prob="0.987" acc_prob="0.992">
            <gDNA_intron_boundary i_start="90287" i_stop="90476" i_length="190"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="90477" e_stop="90559" e_length="83"/>
          </exon>
          <intron i_serial="5" don_prob="0.900" acc_prob="0.917">
            <gDNA_intron_boundary i_start="90560" i_stop="90747" i_length="188"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="90748" e_stop="90811" e_length="64"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="90812" i_stop="90946" i_length="135"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="90947" e_stop="91015" e_length="69"/>
          </exon>
          <intron i_serial="7" don_prob="0.992" acc_prob="0.967">
            <gDNA_intron_boundary i_start="91016" i_stop="91479" i_length="464"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="91480" e_stop="91875" e_length="396"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.625">
            <gDNA_intron_boundary i_start="91876" i_stop="91928" i_length="53"/>
          </intron>
          <exon e_serial="9" e_score="0.667">
            <gDNA_exon_boundary e_start="91929" e_stop="91937" e_length="9"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87182" stop="87459"/>
              <exon start="88940" stop="89097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604902" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87340" stop="87459"/>
              <exon start="88940" stop="89097"/>
              <exon start="89944" stop="90034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87401" stop="87459"/>
              <exon start="88940" stop="89097"/>
              <exon start="89944" stop="90034"/>
              <exon start="90221" stop="90286"/>
              <exon start="90477" stop="90559"/>
              <exon start="90748" stop="90787"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619679" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88944" stop="89097"/>
              <exon start="89944" stop="90034"/>
              <exon start="90221" stop="90286"/>
              <exon start="90477" stop="90559"/>
              <exon start="90748" stop="90811"/>
              <exon start="90947" stop="91015"/>
              <exon start="91480" stop="91709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89017" stop="89097"/>
              <exon start="89944" stop="90034"/>
              <exon start="90221" stop="90286"/>
              <exon start="90477" stop="90559"/>
              <exon start="90748" stop="90811"/>
              <exon start="90947" stop="91015"/>
              <exon start="91480" stop="91702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546683" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90018" stop="90034"/>
              <exon start="90221" stop="90286"/>
              <exon start="90477" stop="90559"/>
              <exon start="90748" stop="90811"/>
              <exon start="90947" stop="91015"/>
              <exon start="91480" stop="91687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255943" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90505" stop="90559"/>
              <exon start="90748" stop="90811"/>
              <exon start="90947" stop="91015"/>
              <exon start="91480" stop="91698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90791" stop="90811"/>
              <exon start="90947" stop="91015"/>
              <exon start="91480" stop="91875"/>
              <exon start="91929" stop="91937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90791" stop="90811"/>
              <exon start="90947" stop="91015"/>
              <exon start="91480" stop="91875"/>
              <exon start="91929" stop="91937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90791" stop="90811"/>
              <exon start="90947" stop="91015"/>
              <exon start="91480" stop="91763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90791" stop="90811"/>
              <exon start="90947" stop="91015"/>
              <exon start="91480" stop="91763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420271" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90791" stop="90811"/>
              <exon start="90947" stop="91015"/>
              <exon start="91480" stop="91763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90792" stop="90811"/>
              <exon start="90947" stop="91015"/>
              <exon start="91480" stop="91875"/>
              <exon start="91929" stop="91937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270959" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTAGTTTGTAATATTGTGCTTTATACGGAAAAAAAGAAAAGAATATACATGCTTTTGACTTGACATTAGCGGTATCGTGTAGATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAG : GCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCATGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCCGAATTTTACCACCCAGGGAAGGAATATAATGTTCGTGTGGCTTCAAG : ATACTTCAAGGGCCCTGAACTTCTAGTTGACTTGCAAGACTATGACTATTCTTTGGACATGTGGAGCCTTGGCTGCATGTTTGCAGGAATG : ATTTTCCGCAAGGAACCTTTCTTTTATGGCCATGATAATCAGGATCAGCTCGTCAAAATTGCAAAG : GTACTTGGGACAGATGAGTTGAATGCGTACTTGCACAAGTATCAACTAGAGCTTGATCCTCAGCTAGAGGCTATGGTTGGGAG : ACACAGTAGGAAGCCGTGGTCCAAATTTATTAATGCAGACAATCAGCATCTAGTGTCACCGGAG : GCTATAGATTATCTTGACAAGCTTCTCCGTTACGATCATCAGACTAGACTTACGGCAAAAGAAGCAATG : GCCCATCCATATTTCGGGCAAGTGAGGGCTGCTGAAACTAGCAGAATGAGGACACAGTAGCTTTCTTGTCTTGCTGTTAATGGGAAGAAAAAAAACTGTGTAATGTACCTTGTGTATCCATTTAAGTGACATTCGTGAGAACTATGTGGATTTGAACTTGAGCAGACATCTGAATTCAGGAATTACAGATCTTCATCATTGAACATTTCAAGAGAAATAGTGTTTTTTAGATTTCCTGATCGTGACCTTGATTGCAAATGGAAGTGACTTGCTGGGCGTCAAAAGTCACCCCACCCCCCCTTCCCCAAAGATACTATCTCCCTAGATGTGAACAAAAGCAGATTTTTGAAAATTAGTTCACTTTGTATATTAGTGCACTGGATTTTTCTGCATTCA : AAGAATGAA</gDNA_template>
            <first_frame> F  S  L  *  Y  C  A  L  Y  G  K  K  E  K  N  I  H  A  F  D  L  T  L  A  V  S  C  R  S  K  E  R  *  R  Y  C  K  I  S  V  V  D  Q  I  L  S  N  S  L  I  S  S  E  I  S  I  Q  K  L  Q  A  *  F  L  S  T  *  T  A  Q  I  S  R  F  C  T  Q  R  *  Q  T  M  T  Y  G  T  T  Y  M  S  F  S  R :   H  *  I  I  A  I  H  R  E  *  C  T  G  M  S  N  L  I  T  L  *  *  T  M  N  C  G  S  F  A  *  *  I  G  V  L  P  N  F  T  T  Q  G  R  N  I  M  F  V  W  L  Q   : D  T  S  R  A  L  N  F  *  L  T  C  K  T  M  T  I  L  W  T  C  G  A  L  A  A  C  L  Q  E  * :   F  S  A  R  N  L  S  F  M  A  M  I  I  R  I  S  S  S  K  L  Q  R :   Y  L  G  Q  M  S  *  M  R  T  C  T  S  I  N  *  S  L  I  L  S  *  R  L  W  L  G   : D  T  V  G  S  R  G  P  N  L  L  M  Q  T  I  S  I  *  C  H  R  R :   L  *  I  I  L  T  S  F  S  V  T  I  I  R  L  D  L  R  Q  K  K  Q  W :   P  I  H  I  S  G  K  *  G  L  L  K  L  A  E  *  G  H  S  S  F  L  V  L  L  L  M  G  R  K  K  T  V  *  C  T  L  C  I  H  L  S  D  I  R  E  N  Y  V  D  L  N  L  S  R  H  L  N  S  G  I  T  D  L  H  H  *  T  F  Q  E  K  *  C  F  L  D  F  L  I  V  T  L  I  A  N  G  S  D  L  L  G  V  K  S  H  P  T  P  P  S  P  K  I  L  S  P  *  M  *  T  K  A  D  F  *  K  L  V  H  F  V  Y  *  C  T  G  F  F  C  I  Q :   R  M   </first_frame>
            <second_frame>  L  V  C  N  I  V  L  Y  T  E  K  K  K  R  I  Y  M  L  L  T  *  H  *  R  Y  R  V  D  Q  K  R  D  K  D  I  A  K  S  L  W  W  T  K  Y  C  Q  T  P  *  Y  R  Q  R  S  A  F  K  N  S  K  L  D  F  *  V  R  E  Q  H  R  F  Q  G  F  V  P  N  A  N  R  L  *  H  T  V  L  H  I  *  A  S  Q   : G  T  R  L  L  P  F  T  G  N  N  A  Q  G  C  Q  T  S  *  R  Y  D  R  P  *  T  A  E  A  S  L  D  R  L  G  S  C  R  I  L  P  P  R  E  G  I  *  C  S  C  G  F  K  :  I  L  Q  G  P  *  T  S  S  *  L  A  R  L  *  L  F  F  G  H  V  E  P  W  L  H  V  C  R  N   : D  F  P  Q  G  T  F  L  L  W  P  *  *  S  G  S  A  R  Q  N  C  K   : G  T  W  D  R  *  V  E  C  V  L  A  Q  V  S  T  R  A  *  S  S  A  R  G  Y  G  W  E  :  T  Q  *  E  A  V  V  Q  I  Y  *  C  R  Q  S  A  S  S  V  T  G   : G  Y  R  L  S  *  Q  A  S  P  L  R  S  S  D  *  T  Y  G  K  R  S  N   : G  P  S  I  F  R  A  S  E  G  C  *  N  *  Q  N  E  D  T  V  A  F  L  S  C  C  *  W  E  E  K  K  L  C  N  V  P  C  V  S  I  *  V  T  F  V  R  T  M  W  I  *  T  *  A  D  I  *  I  Q  E  L  Q  I  F  I  I  E  H  F  K  R  N  S  V  F  *  I  S  *  S  *  P  *  L  Q  M  E  V  T  C  W  A  S  K  V  T  P  P  P  L  P  Q  R  Y  Y  L  P  R  C  E  Q  K  Q  I  F  E  N  *  F  T  L  Y  I  S  A  L  D  F  S  A  F   : K  E  *  </second_frame>
            <third_frame>   *  F  V  I  L  C  F  I  R  K  K  R  K  E  Y  T  C  F  *  L  D  I  S  G  I  V  *  I  K  R  E  I  K  I  L  Q  N  L  C  G  G  P  N  I  V  K  L  L  D  I  V  R  D  Q  H  S  K  T  P  S  L  I  F  E  Y  V  N  S  T  D  F  K  V  L  Y  P  T  L  T  D  Y  D  I  R  Y  Y  I  Y  E  L  L  K  :  A  L  D  Y  C  H  S  Q  G  I  M  H  R  D  V  K  P  H  N  V  M  I  D  H  E  L  R  K  L  R  L  I  D  W  G  L  A  E  F  Y  H  P  G  K  E  Y  N  V  R  V  A  S  R :   Y  F  K  G  P  E  L  L  V  D  L  Q  D  Y  D  Y  S  L  D  M  W  S  L  G  C  M  F  A  G  M  :  I  F  R  K  E  P  F  F  Y  G  H  D  N  Q  D  Q  L  V  K  I  A  K  :  V  L  G  T  D  E  L  N  A  Y  L  H  K  Y  Q  L  E  L  D  P  Q  L  E  A  M  V  G  R :   H  S  R  K  P  W  S  K  F  I  N  A  D  N  Q  H  L  V  S  P  E  :  A  I  D  Y  L  D  K  L  L  R  Y  D  H  Q  T  R  L  T  A  K  E  A  M  :  A  H  P  Y  F  G  Q  V  R  A  A  E  T  S  R  M  R  T  Q  *  L  S  C  L  A  V  N  G  K  K  K  N  C  V  M  Y  L  V  Y  P  F  K  *  H  S  *  E  L  C  G  F  E  L  E  Q  T  S  E  F  R  N  Y  R  S  S  S  L  N  I  S  R  E  I  V  F  F  R  F  P  D  R  D  L  D  C  K  W  K  *  L  A  G  R  Q  K  S  P  H  P  P  F  P  K  D  T  I  S  L  D  V  N  K  S  R  F  L  K  I  S  S  L  C  I  L  V  H  W  I  F  L  H  S  :  K  N  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0053H21.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87265" stop="87459"/>
                    <exon start="88940" stop="89097"/>
                    <exon start="89944" stop="90034"/>
                    <exon start="90221" stop="90286"/>
                    <exon start="90477" stop="90559"/>
                    <exon start="90748" stop="90811"/>
                    <exon start="90947" stop="91015"/>
                    <exon start="91480" stop="91539"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>783</number_coding_nucleotides>
                  <number_encoded_amino_acids>261</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IKREIKILQNLCGGPNIVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNQDQLVKIAKVLGTDELNAYLHKYQLELDPQLEAMVGRHSRKPWSKFINADNQHLVSPEAIDYLDKLLRYDHQTRLTAKEAMAHPYFGQVRAAETSRMRTQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="85086" e_stop="85399"/>
            <exon e_start="86583" e_stop="86705"/>
            <exon e_start="87252" e_stop="87543"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.941" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.361" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="85086" e_stop="85399" e_length="314"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.941">
            <gDNA_intron_boundary i_start="85400" i_stop="86582" i_length="1183"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="86583" e_stop="86705" e_length="123"/>
          </exon>
          <intron i_serial="2" don_prob="0.975" acc_prob="0.361">
            <gDNA_intron_boundary i_start="86706" i_stop="87251" i_length="546"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="87252" e_stop="87543" e_length="292"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85086" stop="85399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243453" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85090" stop="85399"/>
              <exon start="86583" stop="86705"/>
              <exon start="87252" stop="87543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334421" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCCAATAGCAGCATACAAGAGAGAGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGTAGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCTTTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAATGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGG : GATGACTATGAGGTTGTTCGAAAAGTTGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAAAAAG : CGGTATCGTGTAGATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTCAAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTACATATATGAGCTTCTCAAGGTAAGATGATAAACACATCAGATGGCAGTCAATATGGCTTTTATGTATTCATGCTCCCTCTCCCCTGATTCTTTTTTTTTTTTT</gDNA_template>
            <first_frame> S  Q  *  Q  H  T  R  E  S  K  K  L  S  Q  S  M  A  F  S  *  K  W  C  V  S  K  V  V  L  L  L  W  R  L  H  Q  T  E  A  G  P  N  S  F  V  A  S  T  Q  P  A  S  S  L  L  S  L  F  R  N  P  I  P  L  S  I  T  L  Q  S  L  I  S  G  *  T  M  S  K  A  R  V  Y  T  D  I  N  V  L  R  P  R  E  Y  W  D  Y  E  S  L  T  V  Q  W  G :   M  T  M  R  L  F  E  K  L  E  E  E  N  T  V  K  F  L  K  V  *  M  L  T  A  G  R  S  A  *  S  R  S  *  N  L  L  R  R  K  S :   G  I  V  *  I  K  R  E  I  K  I  L  Q  N  L  C  G  G  P  N  I  V  K  L  L  D  I  V  R  D  Q  H  S  K  T  P  S  L  I  F  E  Y  V  N  S  T  D  F  K  V  L  Y  P  T  L  T  D  Y  D  I  R  Y  Y  I  Y  E  L  L  K  V  R  *  *  T  H  Q  M  A  V  N  M  A  F  M  Y  S  C  S  L  S  P  D  S  F  F  F  F </first_frame>
            <second_frame>  P  N  S  S  I  Q  E  R  A  K  S  F  P  N  L  W  L  F  P  K  N  G  V  *  V  K  *  C  Y  C  S  G  G  C  I  K  Q  K  R  G  P  I  P  S  L  H  L  P  S  L  R  L  L  C  C  P  F  S  E  I  R  Y  L  Y  Q  *  L  F  S  L  *  F  P  D  K  P  C  P  K  L  E  Y  T  P  I  S  M  C  F  V  L  G  N  I  G  I  T  N  R  *  L  F  N  G   : G  *  L  *  G  C  S  K  S  W  K  R  K  I  Q  *  S  F  *  R  Y  K  C  *  Q  Q  G  E  V  H  N  Q  D  P  E  T  C  *  E  E  K   : A  V  S  C  R  S  K  E  R  *  R  Y  C  K  I  S  V  V  D  Q  I  L  S  N  S  L  I  S  S  E  I  S  I  Q  K  L  Q  A  *  F  L  S  T  *  T  A  Q  I  S  R  F  C  T  Q  R  *  Q  T  M  T  Y  G  T  T  Y  M  S  F  S  R  *  D  D  K  H  I  R  W  Q  S  I  W  L  L  C  I  H  A  P  S  P  L  I  L  F  F  F   </second_frame>
            <third_frame>   P  I  A  A  Y  K  R  E  Q  K  A  F  P  I  Y  G  F  F  L  K  M  V  C  E  *  S  S  V  I  A  L  A  V  A  S  N  R  S  G  A  Q  F  L  R  C  I  Y  P  A  C  V  F  F  V  V  P  F  P  K  S  D  T  F  I  N  N  S  S  V  S  D  F  R  I  N  H  V  Q  S  S  S  I  H  R  Y  Q  C  A  S  S  *  G  I  L  G  L  R  I  A  N  C  S  M  G  :  D  D  Y  E  V  V  R  K  V  G  R  G  K  Y  S  E  V  F  E  G  I  N  V  N  S  R  E  K  C  I  I  K  I  L  K  P  V  K  K  K  K  :  R  Y  R  V  D  Q  K  R  D  K  D  I  A  K  S  L  W  W  T  K  Y  C  Q  T  P  *  Y  R  Q  R  S  A  F  K  N  S  K  L  D  F  *  V  R  E  Q  H  R  F  Q  G  F  V  P  N  A  N  R  L  *  H  T  V  L  H  I  *  A  S  Q  G  K  M  I  N  T  S  D  G  S  Q  Y  G  F  Y  V  F  M  L  P  L  P  *  F  F  F  F  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0053H21.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85361" stop="85399"/>
                    <exon start="86583" stop="86705"/>
                    <exon start="87252" stop="87329"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GILGLRIANCSMGDDYEVVRKVGRGKYSEVFEGINVNSREKCIIKILKPVKKKKRYRVDQKRDKDIAKSLWWTKYCQTP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0053H21.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="5" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87265" stop="87468"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IKREIKILQNLCGGPNIVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKVR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0053H21.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="5" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85163" stop="85360"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSVIALAVASNRSGAQFLRCIYPACVFFVVPFPKSDTFINNSSVSDFRINHVQSSSIHRYQCASS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="92973" PGL_stop="92421"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92973" e_stop="92421"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="92973" e_stop="92421" e_length="553"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92973" stop="92421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201886" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCATCTTCGTATGAGTTCATATTTCATAATGACAACCCAATAATGGCAACTCTCAATCATGTGTTCCACTGTGTAGTCTCCTTTAAATGTTCTGTAATTTGGCTCATGTAGCATGTGAATTGTTTAGTCACTCTTCTTACATAGATACTGGCTATGTGGTTCAGTACTCCTATCTTTCTCCTTGTACTTTGAAAATCTGAATTTAGGCAATTCGATTGTTTTTTATGTCTTATTAGATTGTCTTTTGTCTTTCTTTTCCAGCCTTCTACGATATTTCTGTGATGTTGTATAACTTCTGCCAAAAAAAATTTTCTTAGGCTTTCAATAGGAGATAGCCTAAGTAAAGAGTCGCATTCAAGTCTGAACAATAATCTTTATGGCTCTGCTTATCAGTGTCTACACAGATTTTCTTACCGGGTGAACTATTTTTATGTCTTCTTTCAGCCTCTGATAATTCATTAGTGTCTTTAGAGTTCATCTTGATTGATGTTTGTTTTGATCCTTCACTAACTTGTATTTATTGTTGCGGATGATGGCAGTGCAAGGTGTGCAT</gDNA_template>
            <first_frame> S  S  S  Y  E  F  I  F  H  N  D  N  P  I  M  A  T  L  N  H  V  F  H  C  V  V  S  F  K  C  S  V  I  W  L  M  *  H  V  N  C  L  V  T  L  L  T  *  I  L  A  M  W  F  S  T  P  I  F  L  L  V  L  *  K  S  E  F  R  Q  F  D  C  F  L  C  L  I  R  L  S  F  V  F  L  F  Q  P  S  T  I  F  L  *  C  C  I  T  S  A  K  K  N  F  L  R  L  S  I  G  D  S  L  S  K  E  S  H  S  S  L  N  N  N  L  Y  G  S  A  Y  Q  C  L  H  R  F  S  Y  R  V  N  Y  F  Y  V  F  F  Q  P  L  I  I  H  *  C  L  *  S  S  S  *  L  M  F  V  L  I  L  H  *  L  V  F  I  V  A  D  D  G  S  A  R  C  A  </first_frame>
            <second_frame>  H  L  R  M  S  S  Y  F  I  M  T  T  Q  *  W  Q  L  S  I  M  C  S  T  V  *  S  P  L  N  V  L  *  F  G  S  C  S  M  *  I  V  *  S  L  F  L  H  R  Y  W  L  C  G  S  V  L  L  S  F  S  L  Y  F  E  N  L  N  L  G  N  S  I  V  F  Y  V  L  L  D  C  L  L  S  F  F  S  S  L  L  R  Y  F  C  D  V  V  *  L  L  P  K  K  I  F  L  G  F  Q  *  E  I  A  *  V  K  S  R  I  Q  V  *  T  I  I  F  M  A  L  L  I  S  V  Y  T  D  F  L  T  G  *  T  I  F  M  S  S  F  S  L  *  *  F  I  S  V  F  R  V  H  L  D  *  C  L  F  *  S  F  T  N  L  Y  L  L  L  R  M  M  A  V  Q  G  V  H </second_frame>
            <third_frame>   I  F  V  *  V  H  I  S  *  *  Q  P  N  N  G  N  S  Q  S  C  V  P  L  C  S  L  L  *  M  F  C  N  L  A  H  V  A  C  E  L  F  S  H  S  S  Y  I  D  T  G  Y  V  V  Q  Y  S  Y  L  S  P  C  T  L  K  I  *  I  *  A  I  R  L  F  F  M  S  Y  *  I  V  F  C  L  S  F  P  A  F  Y  D  I  S  V  M  L  Y  N  F  C  Q  K  K  F  S  *  A  F  N  R  R  *  P  K  *  R  V  A  F  K  S  E  Q  *  S  L  W  L  C  L  S  V  S  T  Q  I  F  L  P  G  E  L  F  L  C  L  L  S  A  S  D  N  S  L  V  S  L  E  F  I  L  I  D  V  C  F  D  P  S  L  T  C  I  Y  C  C  G  *  W  Q  C  K  V  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLe0053H21.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="95058" PGL_stop="99412"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95058" e_stop="95092"/>
            <exon e_start="95927" e_stop="96071"/>
            <exon e_start="96538" e_stop="96706"/>
            <exon e_start="97254" e_stop="97512"/>
            <exon e_start="98393" e_stop="98481"/>
            <exon e_start="99110" e_stop="99292"/>
            <exon e_start="99372" e_stop="99412"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.869" e_score="0.966"/>
          <exon-intron don_prob="0.996" acc_prob="0.982" e_score="0.982"/>
          <exon-intron don_prob="0.911" acc_prob="0.990" e_score="0.973"/>
          <exon-intron don_prob="0.000" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.982" e_score="0.934"/>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="95058" e_stop="95092" e_length="35"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.988">
            <gDNA_intron_boundary i_start="95093" i_stop="95926" i_length="834"/>
          </intron>
          <exon e_serial="2" e_score="0.966">
            <gDNA_exon_boundary e_start="95927" e_stop="96071" e_length="145"/>
          </exon>
          <intron i_serial="2" don_prob="0.955" acc_prob="0.869">
            <gDNA_intron_boundary i_start="96072" i_stop="96537" i_length="466"/>
          </intron>
          <exon e_serial="3" e_score="0.982">
            <gDNA_exon_boundary e_start="96538" e_stop="96706" e_length="169"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.982">
            <gDNA_intron_boundary i_start="96707" i_stop="97253" i_length="547"/>
          </intron>
          <exon e_serial="4" e_score="0.973">
            <gDNA_exon_boundary e_start="97254" e_stop="97512" e_length="259"/>
          </exon>
          <intron i_serial="4" don_prob="0.911" acc_prob="0.990">
            <gDNA_intron_boundary i_start="97513" i_stop="98392" i_length="880"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="98393" e_stop="98481" e_length="89"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="98482" i_stop="99109" i_length="628"/>
          </intron>
          <exon e_serial="6" e_score="0.934">
            <gDNA_exon_boundary e_start="99110" e_stop="99292" e_length="183"/>
          </exon>
          <intron i_serial="6" don_prob="0.987" acc_prob="0.982">
            <gDNA_intron_boundary i_start="99293" i_stop="99371" i_length="79"/>
          </intron>
          <exon e_serial="7" e_score="0.976">
            <gDNA_exon_boundary e_start="99372" e_stop="99412" e_length="41"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95058" stop="95092"/>
              <exon start="95927" stop="96071"/>
              <exon start="96538" stop="96706"/>
              <exon start="97254" stop="97512"/>
              <exon start="98393" stop="98481"/>
              <exon start="99110" stop="99187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96013" stop="96071"/>
              <exon start="96538" stop="96706"/>
              <exon start="97254" stop="97512"/>
              <exon start="98393" stop="98481"/>
              <exon start="99110" stop="99292"/>
              <exon start="99372" stop="99412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700950" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGAAGTTTCCTTTTACTCTATTCGCTTTCTTCAG : TAATGGAAGGCTTGTTGGCAGTATTTGGAGAGTACGACTTAGCATTCCATGGCATTAGTAGGGAGCAGATGGTCATCTCTCTATGTGTTGGATACGCAACTGCTCTCTTTGTCGGTACCTTTTTGGGAATGCTCTCGGATTTGAT : TGGCCAGAGAAAAGTCAGCTTGTTATTTTGCTTGCTGCATCTTTTTGTTGCCGTATGGAGGAGGGTTACTGGACATCCAACTATTTGGCTCGCTAGCATCTGTCTGTCTCTTACCTCTACAATATTTTTCTTCAACTTCGAGACATGGATGGTTGTTGAGCATGATAAG : CTTGAGCAGAGGCAGGATTCAGTGAATGACATGTTTTGGTTAATGACTTTTGTTGAATCTGCATCTTTCATTGGAAGCCAAGTGGTTGGTAACTGGTTAATTGGTGGTCATGAAAAGACAACTTTGCTTGCTCCGTCCAGTGCAGTGGTAATAATGGCTCTTAGTGCTCTGGCTTATGTCAGCCGAGGATGGAAGGAAGATCCAAAATCAATTATTCTTAAAGAATATCAGACTAAATTTCATACATACATAATCAGTG : ATAAAAGGGTTTGGCTTTTGTCATGGACCCAAGCTACCATGCACTTCTCAATTGCAGTTTTTTGGATTACTTGGGCTCCAACCATTGTG : GCAGATGGGAGAGGGGTTTTGCTAGGTTTAGTATACCCCTGTGTACTTGGTGCGAAAATGCTTGGAAGCACTGCATTTTCCTGGTTCTCTAGTGGCCCTTTATCACTCCGAACAGAGGAGTGCTTAGTATATGCCTGTATTATTATGGGCTTTGTCACTTCCATTGTAGCTTTTGATTATCAG : GATGTTGAAATTCTTTTGATGCTATTCTGCATATTTCATGC</gDNA_template>
            <first_frame> E  K  F  P  F  T  L  F  A  F  F  S :   N  G  R  L  V  G  S  I  W  R  V  R  L  S  I  P  W  H  *  *  G  A  D  G  H  L  S  M  C  W  I  R  N  C  S  L  C  R  Y  L  F  G  N  A  L  G  F  D  :  W  P  E  K  S  Q  L  V  I  L  L  A  A  S  F  C  C  R  M  E  E  G  Y  W  T  S  N  Y  L  A  R  *  H  L  S  V  S  Y  L  Y  N  I  F  L  Q  L  R  D  M  D  G  C  *  A  *  *   : A  *  A  E  A  G  F  S  E  *  H  V  L  V  N  D  F  C  *  I  C  I  F  H  W  K  P  S  G  W  *  L  V  N  W  W  S  *  K  D  N  F  A  C  S  V  Q  C  S  G  N  N  G  S  *  C  S  G  L  C  Q  P  R  M  E  G  R  S  K  I  N  Y  S  *  R  I  S  D  *  I  S  Y  I  H  N  Q  * :   *  K  G  L  A  F  V  M  D  P  S  Y  H  A  L  L  N  C  S  F  L  D  Y  L  G  S  N  H  C   : G  R  W  E  R  G  F  A  R  F  S  I  P  L  C  T  W  C  E  N  A  W  K  H  C  I  F  L  V  L  *  W  P  F  I  T  P  N  R  G  V  L  S  I  C  L  Y  Y  Y  G  L  C  H  F  H  C  S  F  *  L  S   : G  C  *  N  S  F  D  A  I  L  H  I  S  C </first_frame>
            <second_frame>  R  S  F  L  L  L  Y  S  L  S  S   : V  M  E  G  L  L  A  V  F  G  E  Y  D  L  A  F  H  G  I  S  R  E  Q  M  V  I  S  L  C  V  G  Y  A  T  A  L  F  V  G  T  F  L  G  M  L  S  D  L  I :   G  Q  R  K  V  S  L  L  F  C  L  L  H  L  F  V  A  V  W  R  R  V  T  G  H  P  T  I  W  L  A  S  I  C  L  S  L  T  S  T  I  F  F  F  N  F  E  T  W  M  V  V  E  H  D  K  :  L  E  Q  R  Q  D  S  V  N  D  M  F  W  L  M  T  F  V  E  S  A  S  F  I  G  S  Q  V  V  G  N  W  L  I  G  G  H  E  K  T  T  L  L  A  P  S  S  A  V  V  I  M  A  L  S  A  L  A  Y  V  S  R  G  W  K  E  D  P  K  S  I  I  L  K  E  Y  Q  T  K  F  H  T  Y  I  I  S   : D  K  R  V  W  L  L  S  W  T  Q  A  T  M  H  F  S  I  A  V  F  W  I  T  W  A  P  T  I  V  :  A  D  G  R  G  V  L  L  G  L  V  Y  P  C  V  L  G  A  K  M  L  G  S  T  A  F  S  W  F  S  S  G  P  L  S  L  R  T  E  E  C  L  V  Y  A  C  I  I  M  G  F  V  T  S  I  V  A  F  D  Y  Q  :  D  V  E  I  L  L  M  L  F  C  I  F  H   </second_frame>
            <third_frame>   E  V  S  F  Y  S  I  R  F  L  Q  :  *  W  K  A  C  W  Q  Y  L  E  S  T  T  *  H  S  M  A  L  V  G  S  R  W  S  S  L  Y  V  L  D  T  Q  L  L  S  L  S  V  P  F  W  E  C  S  R  I  *   : L  A  R  E  K  S  A  C  Y  F  A  C  C  I  F  L  L  P  Y  G  G  G  L  L  D  I  Q  L  F  G  S  L  A  S  V  C  L  L  P  L  Q  Y  F  S  S  T  S  R  H  G  W  L  L  S  M  I  S :   L  S  R  G  R  I  Q  *  M  T  C  F  G  *  *  L  L  L  N  L  H  L  S  L  E  A  K  W  L  V  T  G  *  L  V  V  M  K  R  Q  L  C  L  L  R  P  V  Q  W  *  *  W  L  L  V  L  W  L  M  S  A  E  D  G  R  K  I  Q  N  Q  L  F  L  K  N  I  R  L  N  F  I  H  T  *  S  V  :  I  K  G  F  G  F  C  H  G  P  K  L  P  C  T  S  Q  L  Q  F  F  G  L  L  G  L  Q  P  L  W :   Q  M  G  E  G  F  C  *  V  *  Y  T  P  V  Y  L  V  R  K  C  L  E  A  L  H  F  P  G  S  L  V  A  L  Y  H  S  E  Q  R  S  A  *  Y  M  P  V  L  L  W  A  L  S  L  P  L  *  L  L  I  I  R :   M  L  K  F  F  *  C  Y  S  A  Y  F  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0053H21.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95059" stop="95092"/>
                    <exon start="95927" stop="96071"/>
                    <exon start="96538" stop="96706"/>
                    <exon start="97254" stop="97512"/>
                    <exon start="98393" stop="98481"/>
                    <exon start="99110" stop="99292"/>
                    <exon start="99372" stop="99410"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>918</number_coding_nucleotides>
                  <number_encoded_amino_acids>306</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSFLLLYSLSSVMEGLLAVFGEYDLAFHGISREQMVISLCVGYATALFVGTFLGMLSDLIGQRKVSLLFCLLHLFVAVWRRVTGHPTIWLASICLSLTSTIFFFNFETWMVVEHDKLEQRQDSVNDMFWLMTFVESASFIGSQVVGNWLIGGHEKTTLLAPSSAVVIMALSALAYVSRGWKEDPKSIILKEYQTKFHTYIISDKRVWLLSWTQATMHFSIAVFWITWAPTIVADGRGVLLGLVYPCVLGAKMLGSTAFSWFSSGPLSLRTEECLVYACIIMGFVTSIVAFDYQDVEILLMLFCIFH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="95058" e_stop="95092"/>
            <exon e_start="95927" e_stop="96071"/>
            <exon e_start="96538" e_stop="96706"/>
            <exon e_start="97254" e_stop="97512"/>
            <exon e_start="98393" e_stop="98501"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.869" e_score="0.966"/>
          <exon-intron don_prob="0.996" acc_prob="0.982" e_score="0.959"/>
          <exon-intron don_prob="0.911" acc_prob="0.990" e_score="0.973"/>
          <exon-only e_score="0.936"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="95058" e_stop="95092" e_length="35"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.988">
            <gDNA_intron_boundary i_start="95093" i_stop="95926" i_length="834"/>
          </intron>
          <exon e_serial="2" e_score="0.966">
            <gDNA_exon_boundary e_start="95927" e_stop="96071" e_length="145"/>
          </exon>
          <intron i_serial="2" don_prob="0.955" acc_prob="0.869">
            <gDNA_intron_boundary i_start="96072" i_stop="96537" i_length="466"/>
          </intron>
          <exon e_serial="3" e_score="0.959">
            <gDNA_exon_boundary e_start="96538" e_stop="96706" e_length="169"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.982">
            <gDNA_intron_boundary i_start="96707" i_stop="97253" i_length="547"/>
          </intron>
          <exon e_serial="4" e_score="0.973">
            <gDNA_exon_boundary e_start="97254" e_stop="97512" e_length="259"/>
          </exon>
          <intron i_serial="4" don_prob="0.911" acc_prob="0.990">
            <gDNA_intron_boundary i_start="97513" i_stop="98392" i_length="880"/>
          </intron>
          <exon e_serial="5" e_score="0.936">
            <gDNA_exon_boundary e_start="98393" e_stop="98501" e_length="109"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95058" stop="95092"/>
              <exon start="95927" stop="96071"/>
              <exon start="96538" stop="96706"/>
              <exon start="97254" stop="97512"/>
              <exon start="98393" stop="98482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96576" stop="96706"/>
              <exon start="97254" stop="97512"/>
              <exon start="98393" stop="98501"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557949" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGAAGTTTCCTTTTACTCTATTCGCTTTCTTCAG : TAATGGAAGGCTTGTTGGCAGTATTTGGAGAGTACGACTTAGCATTCCATGGCATTAGTAGGGAGCAGATGGTCATCTCTCTATGTGTTGGATACGCAACTGCTCTCTTTGTCGGTACCTTTTTGGGAATGCTCTCGGATTTGAT : TGGCCAGAGAAAAGTCAGCTTGTTATTTTGCTTGCTGCATCTTTTTGTTGCCGTATGGAGGAGGGTTACTGGACATCCAACTATTTGGCTCGCTAGCATCTGTCTGTCTCTTACCTCTACAATATTTTTCTTCAACTTCGAGACATGGATGGTTGTTGAGCATGATAAG : CTTGAGCAGAGGCAGGATTCAGTGAATGACATGTTTTGGTTAATGACTTTTGTTGAATCTGCATCTTTCATTGGAAGCCAAGTGGTTGGTAACTGGTTAATTGGTGGTCATGAAAAGACAACTTTGCTTGCTCCGTCCAGTGCAGTGGTAATAATGGCTCTTAGTGCTCTGGCTTATGTCAGCCGAGGATGGAAGGAAGATCCAAAATCAATTATTCTTAAAGAATATCAGACTAAATTTCATACATACATAATCAGTG : ATAAAAGGGTTTGGCTTTTGTCATGGACCCAAGCTACCATGCACTTCTCAATTGCAGTTTTTTGGATTACTTGGGCTCCAACCATTGTGGTATGATTCTGATAAGATTT</gDNA_template>
            <first_frame> E  K  F  P  F  T  L  F  A  F  F  S :   N  G  R  L  V  G  S  I  W  R  V  R  L  S  I  P  W  H  *  *  G  A  D  G  H  L  S  M  C  W  I  R  N  C  S  L  C  R  Y  L  F  G  N  A  L  G  F  D  :  W  P  E  K  S  Q  L  V  I  L  L  A  A  S  F  C  C  R  M  E  E  G  Y  W  T  S  N  Y  L  A  R  *  H  L  S  V  S  Y  L  Y  N  I  F  L  Q  L  R  D  M  D  G  C  *  A  *  *   : A  *  A  E  A  G  F  S  E  *  H  V  L  V  N  D  F  C  *  I  C  I  F  H  W  K  P  S  G  W  *  L  V  N  W  W  S  *  K  D  N  F  A  C  S  V  Q  C  S  G  N  N  G  S  *  C  S  G  L  C  Q  P  R  M  E  G  R  S  K  I  N  Y  S  *  R  I  S  D  *  I  S  Y  I  H  N  Q  * :   *  K  G  L  A  F  V  M  D  P  S  Y  H  A  L  L  N  C  S  F  L  D  Y  L  G  S  N  H  C  G  M  I  L  I  R  F </first_frame>
            <second_frame>  R  S  F  L  L  L  Y  S  L  S  S   : V  M  E  G  L  L  A  V  F  G  E  Y  D  L  A  F  H  G  I  S  R  E  Q  M  V  I  S  L  C  V  G  Y  A  T  A  L  F  V  G  T  F  L  G  M  L  S  D  L  I :   G  Q  R  K  V  S  L  L  F  C  L  L  H  L  F  V  A  V  W  R  R  V  T  G  H  P  T  I  W  L  A  S  I  C  L  S  L  T  S  T  I  F  F  F  N  F  E  T  W  M  V  V  E  H  D  K  :  L  E  Q  R  Q  D  S  V  N  D  M  F  W  L  M  T  F  V  E  S  A  S  F  I  G  S  Q  V  V  G  N  W  L  I  G  G  H  E  K  T  T  L  L  A  P  S  S  A  V  V  I  M  A  L  S  A  L  A  Y  V  S  R  G  W  K  E  D  P  K  S  I  I  L  K  E  Y  Q  T  K  F  H  T  Y  I  I  S   : D  K  R  V  W  L  L  S  W  T  Q  A  T  M  H  F  S  I  A  V  F  W  I  T  W  A  P  T  I  V  V  *  F  *  *  D   </second_frame>
            <third_frame>   E  V  S  F  Y  S  I  R  F  L  Q  :  *  W  K  A  C  W  Q  Y  L  E  S  T  T  *  H  S  M  A  L  V  G  S  R  W  S  S  L  Y  V  L  D  T  Q  L  L  S  L  S  V  P  F  W  E  C  S  R  I  *   : L  A  R  E  K  S  A  C  Y  F  A  C  C  I  F  L  L  P  Y  G  G  G  L  L  D  I  Q  L  F  G  S  L  A  S  V  C  L  L  P  L  Q  Y  F  S  S  T  S  R  H  G  W  L  L  S  M  I  S :   L  S  R  G  R  I  Q  *  M  T  C  F  G  *  *  L  L  L  N  L  H  L  S  L  E  A  K  W  L  V  T  G  *  L  V  V  M  K  R  Q  L  C  L  L  R  P  V  Q  W  *  *  W  L  L  V  L  W  L  M  S  A  E  D  G  R  K  I  Q  N  Q  L  F  L  K  N  I  R  L  N  F  I  H  T  *  S  V  :  I  K  G  F  G  F  C  H  G  P  K  L  P  C  T  S  Q  L  Q  F  F  G  L  L  G  L  Q  P  L  W  Y  D  S  D  K  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0053H21.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95059" stop="95092"/>
                    <exon start="95927" stop="96071"/>
                    <exon start="96538" stop="96706"/>
                    <exon start="97254" stop="97512"/>
                    <exon start="98393" stop="98487"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSFLLLYSLSSVMEGLLAVFGEYDLAFHGISREQMVISLCVGYATALFVGTFLGMLSDLIGQRKVSLLFCLLHLFVAVWRRVTGHPTIWLASICLSLTSTIFFFNFETWMVVEHDKLEQRQDSVNDMFWLMTFVESASFIGSQVVGNWLIGGHEKTTLLAPSSAVVIMALSALAYVSRGWKEDPKSIILKEYQTKFHTYIISDKRVWLLSWTQATMHFSIAVFWITWAPTIVV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="100733" PGL_stop="100389"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100733" e_stop="100389"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="100733" e_stop="100389" e_length="345"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100733" stop="100389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353937" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCATTCTTTACGTAATCTTTCTTCAAATTATAATATCTGCAATCCAACCAAATAATTAAAGGAAAAATCACCATGATATAGAGATCATGTCTGCCGGTTTAAAGAAAACATGATAAGAAAGAAGAGAAATTTCTCTTACTCTTTGGTGATCTCTGAATATGAAACAAGACTTTCCGTGGACCATCACAATTCTGAAGAGCTGTTAAAATCATGCAAACTAAGCCACCATGTATTCTGTTACTCCTCTGGTATAACACTTCTCCACAATACTTACTAGAAGCAAAGTATTAATTTAGCCTTTTCAGGGCATCAATCTGCAAAGTGTCTCGAAAGCAAAATTGAACT</gDNA_template>
            <first_frame> S  F  F  T  *  S  F  F  K  L  *  Y  L  Q  S  N  Q  I  I  K  G  K  I  T  M  I  *  R  S  C  L  P  V  *  R  K  H  D  K  K  E  E  K  F  L  L  L  F  G  D  L  *  I  *  N  K  T  F  R  G  P  S  Q  F  *  R  A  V  K  I  M  Q  T  K  P  P  C  I  L  L  L  L  W  Y  N  T  S  P  Q  Y  L  L  E  A  K  Y  *  F  S  L  F  R  A  S  I  C  K  V  S  R  K  Q  N  *  T </first_frame>
            <second_frame>  H  S  L  R  N  L  S  S  N  Y  N  I  C  N  P  T  K  *  L  K  E  K  S  P  *  Y  R  D  H  V  C  R  F  K  E  N  M  I  R  K  K  R  N  F  S  Y  S  L  V  I  S  E  Y  E  T  R  L  S  V  D  H  H  N  S  E  E  L  L  K  S  C  K  L  S  H  H  V  F  C  Y  S  S  G  I  T  L  L  H  N  T  Y  *  K  Q  S  I  N  L  A  F  S  G  H  Q  S  A  K  C  L  E  S  K  I  E   </second_frame>
            <third_frame>   I  L  Y  V  I  F  L  Q  I  I  I  S  A  I  Q  P  N  N  *  R  K  N  H  H  D  I  E  I  M  S  A  G  L  K  K  T  *  *  E  R  R  E  I  S  L  T  L  W  *  S  L  N  M  K  Q  D  F  P  W  T  I  T  I  L  K  S  C  *  N  H  A  N  *  A  T  M  Y  S  V  T  P  L  V  *  H  F  S  T  I  L  T  R  S  K  V  L  I  *  P  F  Q  G  I  N  L  Q  S  V  S  K  A  K  L  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0053H21.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100657" stop="100457"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YRDHVCRFKENMIRKKRNFSYSLVISEYETRLSVDHHNSEELLKSCKLSHHVFCYSSGITLLHNTY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="105803" PGL_stop="103208"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="105803" e_stop="103286"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="105803" e_stop="103286" e_length="2518"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105803" stop="103323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105780" stop="105006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105526" stop="104831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105180" stop="104608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104865" stop="104231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104753" stop="104177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104624" stop="104115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104534" stop="103804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104465" stop="103684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427838" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104465" stop="103694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104358" stop="103537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104340" stop="103540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104267" stop="103436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706660" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103917" stop="103286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699872" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATCCACTCCCTCTTATTAATGCAGCAGTCCAAGCGAAAAATTAATCAAAAATGTCTACATACACACTACTAGTTGTTGTACTTGTGTGCCTATGTCACATGTCTGTGGCAATGGTGGAGAAGAAAACATACATCATTCACATGGCTAAATCACAAATGCCAGCAATATTTGATGATCATACTCACTGGTATGACGCGTCCCTCAAATCCGTCTCTGAATCAGCAGAGATGATCTATGTTTATAAAAACGTTGTTCATGGTTTTGCAGCAAGGCTTACAGCTCGACAAGCTGAATCCTTAGAGACCCAACCTGGGATTCTCTCTGTTTTGCCTGAGCTGATATACCAACTCCACACTACTCGGACACCTCTTTTTTTGGGACTTGATAGAAGTGTTAATATCTTTCCTGAGTCCGATGCTATGAGTGATGTCATTGTCGGAGTACTCGATACAGGGGTTTGGCCGGAGAGAAAGAGCTTTGACGATACTGGATTTGGACCTGTACCAGATTCGTGGAAAGGTGAGTGTGAGTCCAGCAACAACTTCAGTTCTGCCATGTGTAACAGAAAGCTTGTTGGAGCGAGGTATTTTTCTAGGGGTTATGAAACTACTCTTGGACCAATTGATGAGTCCAAGGAGTCTAAATCTCCTAGGGATGATGATGGACATGGAACACACACTGCTTCGACAGCAGCTGGTTCAGTTGTTCAGGGTGCTAGCCTTTTTGGTTATGCTTCAGGAACTGCTCGTGGAATGGCCTATCGTGCCAGAGTTGCCATGTACAAAGTTTGCTGGCTTGGGGGATGTTTTAACTCTGACATATTGGCAGGGATGGACAAAGCCATTGATGATAAAGTTGATGTGCTTTCATTATCACTTGGTGGAAGCACACCAGATTACTACAAAGATAGCATTGCAATTGGAGCTTTTGCTGCTATGGAGAAGGGTATTTTGGTTTCTTGCTCTGCTGGAAATGCTGGACCTAATCAATTCAGTTTGGCCAACCAAGCACCTTGGATCACCACAGTCGGTGCTGGAACAATTGACCGTGATTTTCCAGCATATGTAAGCCTTGGCAATGGTAAAAATTTCTCCGGCGTTTCACTTTACGCGGGTGATTCATTACTTAATAAAATGCTTCCCTTGGTGTATGCTGGTAATGCCAGCAATGTAACCAGTGGAAATCTCTGTATGATGGGTACCTTAATTCCTGAGAAAGTTAAAGGAAAAATTGTGCTGTGTGACAGAGGGATTAGCGCTCGAGTCCAAAAGGGTTTTGTGGTAAAAGAGGCTGGTGGAGCCGGCATGGTTTTGGCTAACACCGCAGCAAATGGGGAGGAACTAGTGGCTGACGCCCATTTACTTCCAGCGGCGGCGGTGGGTCAAAAAGCCGGTGATGTAATCAAGAAATATTTATTCTCAGATCCTAATCCAACGGCCGAAATTCTTTTTGGAGGAACAAAAGTAGACATCGAACCGTCACCGGTTGTCGCAGCGTTCAGTTCTAGAGGCCCAAATTCAATCACCCCGGAGATACTCAAACCGGATATTATCGCGCCCGGTGTAAACATTCTGGCCGGTTGGACCGGAGCCGTCGGCCCGACGGGGATGGCAGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGCGGCTTGGCGGCTTTGATAAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGACCTCCGCTTACACCGTCTACAAGAACGGCGGAGCACTAGTAGATGTCGCCACCGGAAAACCATCTACACCTTTCGACCACGGCGCTGGACACGTGGATCCCGTTTCGGCAGTGAACCCAGGTCTTGTTTACGACATAAACGCCGATGATTACCTCAATTTCATGTGTGCATTGAAATACACTCCATCACAAATCAACAGCTTAGCGAGAAGAAACTTCACGTGTGATTCAAGCAAAACATACAGCGTCACAGATTTGAATTACCCTTCATTTGCTGTTTCATTCGTTGCCGGGAGTGACGGTTCAAACACAATCAAGTACAGCCGGACATTGACTAATGTTGGACCGGCTGGAACATACAAAGTTACAGTTTCTTCCCCAAATAGTTCAGTGAAAATTATAGTTGAGCCTGAAACATTGAGTTTCACTCAGATTAATGAGAAGAAATCGTATACAGTGAGTTTTACTGCTCCATCAAAGTCCTCAGCTACGGATGTATTCGGTAGAATTGAGTGGTCAGATGGGAAGCATGTGGTTAGTAGTCCAGTTGCAATTTCTTGGTCATGAATAATATGAAGACATAGCTATAGCTTCTGTTAATTTTATGTATAAGTTGATGTTTTTCTGCTTTTAAGTTTCATTCCAGCACAAAAGTTTGTAGCTGGTCTCAAGATTTTTTTATGGATAACATGAAAGAATCAAAGAAATGTATGCCTTATACAATATCTTGCTCACTGTACGGTATTTTAAGCAATTCTAATTGTGAACT</gDNA_template>
            <first_frame> H  P  L  P  L  I  N  A  A  V  Q  A  K  N  *  S  K  M  S  T  Y  T  L  L  V  V  V  L  V  C  L  C  H  M  S  V  A  M  V  E  K  K  T  Y  I  I  H  M  A  K  S  Q  M  P  A  I  F  D  D  H  T  H  W  Y  D  A  S  L  K  S  V  S  E  S  A  E  M  I  Y  V  Y  K  N  V  V  H  G  F  A  A  R  L  T  A  R  Q  A  E  S  L  E  T  Q  P  G  I  L  S  V  L  P  E  L  I  Y  Q  L  H  T  T  R  T  P  L  F  L  G  L  D  R  S  V  N  I  F  P  E  S  D  A  M  S  D  V  I  V  G  V  L  D  T  G  V  W  P  E  R  K  S  F  D  D  T  G  F  G  P  V  P  D  S  W  K  G  E  C  E  S  S  N  N  F  S  S  A  M  C  N  R  K  L  V  G  A  R  Y  F  S  R  G  Y  E  T  T  L  G  P  I  D  E  S  K  E  S  K  S  P  R  D  D  D  G  H  G  T  H  T  A  S  T  A  A  G  S  V  V  Q  G  A  S  L  F  G  Y  A  S  G  T  A  R  G  M  A  Y  R  A  R  V  A  M  Y  K  V  C  W  L  G  G  C  F  N  S  D  I  L  A  G  M  D  K  A  I  D  D  K  V  D  V  L  S  L  S  L  G  G  S  T  P  D  Y  Y  K  D  S  I  A  I  G  A  F  A  A  M  E  K  G  I  L  V  S  C  S  A  G  N  A  G  P  N  Q  F  S  L  A  N  Q  A  P  W  I  T  T  V  G  A  G  T  I  D  R  D  F  P  A  Y  V  S  L  G  N  G  K  N  F  S  G  V  S  L  Y  A  G  D  S  L  L  N  K  M  L  P  L  V  Y  A  G  N  A  S  N  V  T  S  G  N  L  C  M  M  G  T  L  I  P  E  K  V  K  G  K  I  V  L  C  D  R  G  I  S  A  R  V  Q  K  G  F  V  V  K  E  A  G  G  A  G  M  V  L  A  N  T  A  A  N  G  E  E  L  V  A  D  A  H  L  L  P  A  A  A  V  G  Q  K  A  G  D  V  I  K  K  Y  L  F  S  D  P  N  P  T  A  E  I  L  F  G  G  T  K  V  D  I  E  P  S  P  V  V  A  A  F  S  S  R  G  P  N  S  I  T  P  E  I  L  K  P  D  I  I  A  P  G  V  N  I  L  A  G  W  T  G  A  V  G  P  T  G  M  A  E  D  D  R  R  V  E  F  N  I  I  S  G  T  S  M  S  C  P  H  V  S  G  L  A  A  L  I  K  G  V  H  P  E  W  S  P  A  A  I  R  S  A  L  M  T  S  A  Y  T  V  Y  K  N  G  G  A  L  V  D  V  A  T  G  K  P  S  T  P  F  D  H  G  A  G  H  V  D  P  V  S  A  V  N  P  G  L  V  Y  D  I  N  A  D  D  Y  L  N  F  M  C  A  L  K  Y  T  P  S  Q  I  N  S  L  A  R  R  N  F  T  C  D  S  S  K  T  Y  S  V  T  D  L  N  Y  P  S  F  A  V  S  F  V  A  G  S  D  G  S  N  T  I  K  Y  S  R  T  L  T  N  V  G  P  A  G  T  Y  K  V  T  V  S  S  P  N  S  S  V  K  I  I  V  E  P  E  T  L  S  F  T  Q  I  N  E  K  K  S  Y  T  V  S  F  T  A  P  S  K  S  S  A  T  D  V  F  G  R  I  E  W  S  D  G  K  H  V  V  S  S  P  V  A  I  S  W  S  *  I  I  *  R  H  S  Y  S  F  C  *  F  Y  V  *  V  D  V  F  L  L  L  S  F  I  P  A  Q  K  F  V  A  G  L  K  I  F  L  W  I  T  *  K  N  Q  R  N  V  C  L  I  Q  Y  L  A  H  C  T  V  F  *  A  I  L  I  V  N  </first_frame>
            <second_frame>  I  H  S  L  L  L  M  Q  Q  S  K  R  K  I  N  Q  K  C  L  H  T  H  Y  *  L  L  Y  L  C  A  Y  V  T  C  L  W  Q  W  W  R  R  K  H  T  S  F  T  W  L  N  H  K  C  Q  Q  Y  L  M  I  I  L  T  G  M  T  R  P  S  N  P  S  L  N  Q  Q  R  *  S  M  F  I  K  T  L  F  M  V  L  Q  Q  G  L  Q  L  D  K  L  N  P  *  R  P  N  L  G  F  S  L  F  C  L  S  *  Y  T  N  S  T  L  L  G  H  L  F  F  W  D  L  I  E  V  L  I  S  F  L  S  P  M  L  *  V  M  S  L  S  E  Y  S  I  Q  G  F  G  R  R  E  R  A  L  T  I  L  D  L  D  L  Y  Q  I  R  G  K  V  S  V  S  P  A  T  T  S  V  L  P  C  V  T  E  S  L  L  E  R  G  I  F  L  G  V  M  K  L  L  L  D  Q  L  M  S  P  R  S  L  N  L  L  G  M  M  M  D  M  E  H  T  L  L  R  Q  Q  L  V  Q  L  F  R  V  L  A  F  L  V  M  L  Q  E  L  L  V  E  W  P  I  V  P  E  L  P  C  T  K  F  A  G  L  G  D  V  L  T  L  T  Y  W  Q  G  W  T  K  P  L  M  I  K  L  M  C  F  H  Y  H  L  V  E  A  H  Q  I  T  T  K  I  A  L  Q  L  E  L  L  L  L  W  R  R  V  F  W  F  L  A  L  L  E  M  L  D  L  I  N  S  V  W  P  T  K  H  L  G  S  P  Q  S  V  L  E  Q  L  T  V  I  F  Q  H  M  *  A  L  A  M  V  K  I  S  P  A  F  H  F  T  R  V  I  H  Y  L  I  K  C  F  P  W  C  M  L  V  M  P  A  M  *  P  V  E  I  S  V  *  W  V  P  *  F  L  R  K  L  K  E  K  L  C  C  V  T  E  G  L  A  L  E  S  K  R  V  L  W  *  K  R  L  V  E  P  A  W  F  W  L  T  P  Q  Q  M  G  R  N  *  W  L  T  P  I  Y  F  Q  R  R  R  W  V  K  K  P  V  M  *  S  R  N  I  Y  S  Q  I  L  I  Q  R  P  K  F  F  L  E  E  Q  K  *  T  S  N  R  H  R  L  S  Q  R  S  V  L  E  A  Q  I  Q  S  P  R  R  Y  S  N  R  I  L  S  R  P  V  *  T  F  W  P  V  G  P  E  P  S  A  R  R  G  W  Q  R  T  I  D  G  S  S  S  T  L  S  Q  A  H  P  C  R  V  H  T  *  A  A  W  R  L  *  *  K  E  S  T  Q  N  G  A  P  P  P  F  V  R  R  S  *  P  P  L  T  P  S  T  R  T  A  E  H  *  *  M  S  P  P  E  N  H  L  H  L  S  T  T  A  L  D  T  W  I  P  F  R  Q  *  T  Q  V  L  F  T  T  *  T  P  M  I  T  S  I  S  C  V  H  *  N  T  L  H  H  K  S  T  A  *  R  E  E  T  S  R  V  I  Q  A  K  H  T  A  S  Q  I  *  I  T  L  H  L  L  F  H  S  L  P  G  V  T  V  Q  T  Q  S  S  T  A  G  H  *  L  M  L  D  R  L  E  H  T  K  L  Q  F  L  P  Q  I  V  Q  *  K  L  *  L  S  L  K  H  *  V  S  L  R  L  M  R  R  N  R  I  Q  *  V  L  L  L  H  Q  S  P  Q  L  R  M  Y  S  V  E  L  S  G  Q  M  G  S  M  W  L  V  V  Q  L  Q  F  L  G  H  E  *  Y  E  D  I  A  I  A  S  V  N  F  M  Y  K  L  M  F  F  C  F  *  V  S  F  Q  H  K  S  L  *  L  V  S  R  F  F  Y  G  *  H  E  R  I  K  E  M  Y  A  L  Y  N  I  L  L  T  V  R  Y  F  K  Q  F  *  L  *  T </second_frame>
            <third_frame>   S  T  P  S  Y  *  C  S  S  P  S  E  K  L  I  K  N  V  Y  I  H  T  T  S  C  C  T  C  V  P  M  S  H  V  C  G  N  G  G  E  E  N  I  H  H  S  H  G  *  I  T  N  A  S  N  I  *  *  S  Y  S  L  V  *  R  V  P  Q  I  R  L  *  I  S  R  D  D  L  C  L  *  K  R  C  S  W  F  C  S  K  A  Y  S  S  T  S  *  I  L  R  D  P  T  W  D  S  L  C  F  A  *  A  D  I  P  T  P  H  Y  S  D  T  S  F  F  G  T  *  *  K  C  *  Y  L  S  *  V  R  C  Y  E  *  C  H  C  R  S  T  R  Y  R  G  L  A  G  E  K  E  L  *  R  Y  W  I  W  T  C  T  R  F  V  E  R  *  V  *  V  Q  Q  Q  L  Q  F  C  H  V  *  Q  K  A  C  W  S  E  V  F  F  *  G  L  *  N  Y  S  W  T  N  *  *  V  Q  G  V  *  I  S  *  G  *  *  W  T  W  N  T  H  C  F  D  S  S  W  F  S  C  S  G  C  *  P  F  W  L  C  F  R  N  C  S  W  N  G  L  S  C  Q  S  C  H  V  Q  S  L  L  A  W  G  M  F  *  L  *  H  I  G  R  D  G  Q  S  H  *  *  *  S  *  C  A  F  I  I  T  W  W  K  H  T  R  L  L  Q  R  *  H  C  N  W  S  F  C  C  Y  G  E  G  Y  F  G  F  L  L  C  W  K  C  W  T  *  S  I  Q  F  G  Q  P  S  T  L  D  H  H  S  R  C  W  N  N  *  P  *  F  S  S  I  C  K  P  W  Q  W  *  K  F  L  R  R  F  T  L  R  G  *  F  I  T  *  *  N  A  S  L  G  V  C  W  *  C  Q  Q  C  N  Q  W  K  S  L  Y  D  G  Y  L  N  S  *  E  S  *  R  K  N  C  A  V  *  Q  R  D  *  R  S  S  P  K  G  F  C  G  K  R  G  W  W  S  R  H  G  F  G  *  H  R  S  K  W  G  G  T  S  G  *  R  P  F  T  S  S  G  G  G  G  S  K  S  R  *  C  N  Q  E  I  F  I  L  R  S  *  S  N  G  R  N  S  F  W  R  N  K  S  R  H  R  T  V  T  G  C  R  S  V  Q  F  *  R  P  K  F  N  H  P  G  D  T  Q  T  G  Y  Y  R  A  R  C  K  H  S  G  R  L  D  R  S  R  R  P  D  G  D  G  R  G  R  *  T  G  R  V  Q  H  Y  L  R  H  I  H  V  V  S  T  R  E  R  L  G  G  F  D  K  R  S  P  P  R  M  E  P  R  R  H  S  F  G  A  H  D  L  R  L  H  R  L  Q  E  R  R  S  T  S  R  C  R  H  R  K  T  I  Y  T  F  R  P  R  R  W  T  R  G  S  R  F  G  S  E  P  R  S  C  L  R  H  K  R  R  *  L  P  Q  F  H  V  C  I  E  I  H  S  I  T  N  Q  Q  L  S  E  K  K  L  H  V  *  F  K  Q  N  I  Q  R  H  R  F  E  L  P  F  I  C  C  F  I  R  C  R  E  *  R  F  K  H  N  Q  V  Q  P  D  I  D  *  C  W  T  G  W  N  I  Q  S  Y  S  F  F  P  K  *  F  S  E  N  Y  S  *  A  *  N  I  E  F  H  S  D  *  *  E  E  I  V  Y  S  E  F  Y  C  S  I  K  V  L  S  Y  G  C  I  R  *  N  *  V  V  R  W  E  A  C  G  *  *  S  S  C  N  F  L  V  M  N  N  M  K  T  *  L  *  L  L  L  I  L  C  I  S  *  C  F  S  A  F  K  F  H  S  S  T  K  V  C  S  W  S  Q  D  F  F  M  D  N  M  K  E  S  K  K  C  M  P  Y  T  I  S  C  S  L  Y  G  I  L  S  N  S  N  C  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0053H21.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105758" stop="103488"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>2268</number_coding_nucleotides>
                  <number_encoded_amino_acids>756</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKMSTYTLLVVVLVCLCHMSVAMVEKKTYIIHMAKSQMPAIFDDHTHWYDASLKSVSESAEMIYVYKNVVHGFAARLTARQAESLETQPGILSVLPELIYQLHTTRTPLFLGLDRSVNIFPESDAMSDVIVGVLDTGVWPERKSFDDTGFGPVPDSWKGECESSNNFSSAMCNRKLVGARYFSRGYETTLGPIDESKESKSPRDDDGHGTHTASTAAGSVVQGASLFGYASGTARGMAYRARVAMYKVCWLGGCFNSDILAGMDKAIDDKVDVLSLSLGGSTPDYYKDSIAIGAFAAMEKGILVSCSAGNAGPNQFSLANQAPWITTVGAGTIDRDFPAYVSLGNGKNFSGVSLYAGDSLLNKMLPLVYAGNASNVTSGNLCMMGTLIPEKVKGKIVLCDRGISARVQKGFVVKEAGGAGMVLANTAANGEELVADAHLLPAAAVGQKAGDVIKKYLFSDPNPTAEILFGGTKVDIEPSPVVAAFSSRGPNSITPEILKPDIIAPGVNILAGWTGAVGPTGMAEDDRRVEFNIISGTSMSCPHVSGLAALIKGVHPEWSPAAIRSALMTSAYTVYKNGGALVDVATGKPSTPFDHGAGHVDPVSAVNPGLVYDINADDYLNFMCALKYTPSQINSLARRNFTCDSSKTYSVTDLNYPSFAVSFVAGSDGSNTIKYSRTLTNVGPAGTYKVTVSSPNSSVKIIVEPETLSFTQINEKKSYTVSFTAPSKSSATDVFGRIEWSDGKHVVSSPVAISWS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="105803" e_stop="103314"/>
            <exon e_start="103245" e_stop="103208"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.517" acc_prob="0.000" e_score="0.996"/>
          <exon-only e_score="0.842"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="105803" e_stop="103314" e_length="2490"/>
          </exon>
          <intron i_serial="1" don_prob="0.517" acc_prob="0.000">
            <gDNA_intron_boundary i_start="103313" i_stop="103246" i_length="68"/>
          </intron>
          <exon e_serial="2" e_score="0.842">
            <gDNA_exon_boundary e_start="103245" e_stop="103208" e_length="38"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105803" stop="103323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105780" stop="105006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105526" stop="104831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105180" stop="104608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104865" stop="104231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104753" stop="104177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104624" stop="104115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104534" stop="103804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104465" stop="103684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427838" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104465" stop="103694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104358" stop="103537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104340" stop="103540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104267" stop="103436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706660" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103861" stop="103314"/>
              <exon start="103245" stop="103208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427839" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATCCACTCCCTCTTATTAATGCAGCAGTCCAAGCGAAAAATTAATCAAAAATGTCTACATACACACTACTAGTTGTTGTACTTGTGTGCCTATGTCACATGTCTGTGGCAATGGTGGAGAAGAAAACATACATCATTCACATGGCTAAATCACAAATGCCAGCAATATTTGATGATCATACTCACTGGTATGACGCGTCCCTCAAATCCGTCTCTGAATCAGCAGAGATGATCTATGTTTATAAAAACGTTGTTCATGGTTTTGCAGCAAGGCTTACAGCTCGACAAGCTGAATCCTTAGAGACCCAACCTGGGATTCTCTCTGTTTTGCCTGAGCTGATATACCAACTCCACACTACTCGGACACCTCTTTTTTTGGGACTTGATAGAAGTGTTAATATCTTTCCTGAGTCCGATGCTATGAGTGATGTCATTGTCGGAGTACTCGATACAGGGGTTTGGCCGGAGAGAAAGAGCTTTGACGATACTGGATTTGGACCTGTACCAGATTCGTGGAAAGGTGAGTGTGAGTCCAGCAACAACTTCAGTTCTGCCATGTGTAACAGAAAGCTTGTTGGAGCGAGGTATTTTTCTAGGGGTTATGAAACTACTCTTGGACCAATTGATGAGTCCAAGGAGTCTAAATCTCCTAGGGATGATGATGGACATGGAACACACACTGCTTCGACAGCAGCTGGTTCAGTTGTTCAGGGTGCTAGCCTTTTTGGTTATGCTTCAGGAACTGCTCGTGGAATGGCCTATCGTGCCAGAGTTGCCATGTACAAAGTTTGCTGGCTTGGGGGATGTTTTAACTCTGACATATTGGCAGGGATGGACAAAGCCATTGATGATAAAGTTGATGTGCTTTCATTATCACTTGGTGGAAGCACACCAGATTACTACAAAGATAGCATTGCAATTGGAGCTTTTGCTGCTATGGAGAAGGGTATTTTGGTTTCTTGCTCTGCTGGAAATGCTGGACCTAATCAATTCAGTTTGGCCAACCAAGCACCTTGGATCACCACAGTCGGTGCTGGAACAATTGACCGTGATTTTCCAGCATATGTAAGCCTTGGCAATGGTAAAAATTTCTCCGGCGTTTCACTTTACGCGGGTGATTCATTACTTAATAAAATGCTTCCCTTGGTGTATGCTGGTAATGCCAGCAATGTAACCAGTGGAAATCTCTGTATGATGGGTACCTTAATTCCTGAGAAAGTTAAAGGAAAAATTGTGCTGTGTGACAGAGGGATTAGCGCTCGAGTCCAAAAGGGTTTTGTGGTAAAAGAGGCTGGTGGAGCCGGCATGGTTTTGGCTAACACCGCAGCAAATGGGGAGGAACTAGTGGCTGACGCCCATTTACTTCCAGCGGCGGCGGTGGGTCAAAAAGCCGGTGATGTAATCAAGAAATATTTATTCTCAGATCCTAATCCAACGGCCGAAATTCTTTTTGGAGGAACAAAAGTAGACATCGAACCGTCACCGGTTGTCGCAGCGTTCAGTTCTAGAGGCCCAAATTCAATCACCCCGGAGATACTCAAACCGGATATTATCGCGCCCGGTGTAAACATTCTGGCCGGTTGGACCGGAGCCGTCGGCCCGACGGGGATGGCAGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGCGGCTTGGCGGCTTTGATAAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGACCTCCGCTTACACCGTCTACAAGAACGGCGGAGCACTAGTAGATGTCGCCACCGGAAAACCATCTACACCTTTCGACCACGGCGCTGGACACGTGGATCCCGTTTCGGCAGTGAACCCAGGTCTTGTTTACGACATAAACGCCGATGATTACCTCAATTTCATGTGTGCATTGAAATACACTCCATCACAAATCAACAGCTTAGCGAGAAGAAACTTCACGTGTGATTCAAGCAAAACATACAGCGTCACAGATTTGAATTACCCTTCATTTGCTGTTTCATTCGTTGCCGGGAGTGACGGTTCAAACACAATCAAGTACAGCCGGACATTGACTAATGTTGGACCGGCTGGAACATACAAAGTTACAGTTTCTTCCCCAAATAGTTCAGTGAAAATTATAGTTGAGCCTGAAACATTGAGTTTCACTCAGATTAATGAGAAGAAATCGTATACAGTGAGTTTTACTGCTCCATCAAAGTCCTCAGCTACGGATGTATTCGGTAGAATTGAGTGGTCAGATGGGAAGCATGTGGTTAGTAGTCCAGTTGCAATTTCTTGGTCATGAATAATATGAAGACATAGCTATAGCTTCTGTTAATTTTATGTATAAGTTGATGTTTTTCTGCTTTTAAGTTTCATTCCAGCACAAAAGTTTGTAGCTGGTCTCAAGATTTTTTTATGGATAACATGAAAGAATCAAAGAAATGTATGCCTTATACAATATCTTGCTCACTGTACG : TGTATCTCGTATACCAAGTATCGTAAGCAATTCTAATT</gDNA_template>
            <first_frame> H  P  L  P  L  I  N  A  A  V  Q  A  K  N  *  S  K  M  S  T  Y  T  L  L  V  V  V  L  V  C  L  C  H  M  S  V  A  M  V  E  K  K  T  Y  I  I  H  M  A  K  S  Q  M  P  A  I  F  D  D  H  T  H  W  Y  D  A  S  L  K  S  V  S  E  S  A  E  M  I  Y  V  Y  K  N  V  V  H  G  F  A  A  R  L  T  A  R  Q  A  E  S  L  E  T  Q  P  G  I  L  S  V  L  P  E  L  I  Y  Q  L  H  T  T  R  T  P  L  F  L  G  L  D  R  S  V  N  I  F  P  E  S  D  A  M  S  D  V  I  V  G  V  L  D  T  G  V  W  P  E  R  K  S  F  D  D  T  G  F  G  P  V  P  D  S  W  K  G  E  C  E  S  S  N  N  F  S  S  A  M  C  N  R  K  L  V  G  A  R  Y  F  S  R  G  Y  E  T  T  L  G  P  I  D  E  S  K  E  S  K  S  P  R  D  D  D  G  H  G  T  H  T  A  S  T  A  A  G  S  V  V  Q  G  A  S  L  F  G  Y  A  S  G  T  A  R  G  M  A  Y  R  A  R  V  A  M  Y  K  V  C  W  L  G  G  C  F  N  S  D  I  L  A  G  M  D  K  A  I  D  D  K  V  D  V  L  S  L  S  L  G  G  S  T  P  D  Y  Y  K  D  S  I  A  I  G  A  F  A  A  M  E  K  G  I  L  V  S  C  S  A  G  N  A  G  P  N  Q  F  S  L  A  N  Q  A  P  W  I  T  T  V  G  A  G  T  I  D  R  D  F  P  A  Y  V  S  L  G  N  G  K  N  F  S  G  V  S  L  Y  A  G  D  S  L  L  N  K  M  L  P  L  V  Y  A  G  N  A  S  N  V  T  S  G  N  L  C  M  M  G  T  L  I  P  E  K  V  K  G  K  I  V  L  C  D  R  G  I  S  A  R  V  Q  K  G  F  V  V  K  E  A  G  G  A  G  M  V  L  A  N  T  A  A  N  G  E  E  L  V  A  D  A  H  L  L  P  A  A  A  V  G  Q  K  A  G  D  V  I  K  K  Y  L  F  S  D  P  N  P  T  A  E  I  L  F  G  G  T  K  V  D  I  E  P  S  P  V  V  A  A  F  S  S  R  G  P  N  S  I  T  P  E  I  L  K  P  D  I  I  A  P  G  V  N  I  L  A  G  W  T  G  A  V  G  P  T  G  M  A  E  D  D  R  R  V  E  F  N  I  I  S  G  T  S  M  S  C  P  H  V  S  G  L  A  A  L  I  K  G  V  H  P  E  W  S  P  A  A  I  R  S  A  L  M  T  S  A  Y  T  V  Y  K  N  G  G  A  L  V  D  V  A  T  G  K  P  S  T  P  F  D  H  G  A  G  H  V  D  P  V  S  A  V  N  P  G  L  V  Y  D  I  N  A  D  D  Y  L  N  F  M  C  A  L  K  Y  T  P  S  Q  I  N  S  L  A  R  R  N  F  T  C  D  S  S  K  T  Y  S  V  T  D  L  N  Y  P  S  F  A  V  S  F  V  A  G  S  D  G  S  N  T  I  K  Y  S  R  T  L  T  N  V  G  P  A  G  T  Y  K  V  T  V  S  S  P  N  S  S  V  K  I  I  V  E  P  E  T  L  S  F  T  Q  I  N  E  K  K  S  Y  T  V  S  F  T  A  P  S  K  S  S  A  T  D  V  F  G  R  I  E  W  S  D  G  K  H  V  V  S  S  P  V  A  I  S  W  S  *  I  I  *  R  H  S  Y  S  F  C  *  F  Y  V  *  V  D  V  F  L  L  L  S  F  I  P  A  Q  K  F  V  A  G  L  K  I  F  L  W  I  T  *  K  N  Q  R  N  V  C  L  I  Q  Y  L  A  H  C  T  :  C  I  S  Y  T  K  Y  R  K  Q  F  *   </first_frame>
            <second_frame>  I  H  S  L  L  L  M  Q  Q  S  K  R  K  I  N  Q  K  C  L  H  T  H  Y  *  L  L  Y  L  C  A  Y  V  T  C  L  W  Q  W  W  R  R  K  H  T  S  F  T  W  L  N  H  K  C  Q  Q  Y  L  M  I  I  L  T  G  M  T  R  P  S  N  P  S  L  N  Q  Q  R  *  S  M  F  I  K  T  L  F  M  V  L  Q  Q  G  L  Q  L  D  K  L  N  P  *  R  P  N  L  G  F  S  L  F  C  L  S  *  Y  T  N  S  T  L  L  G  H  L  F  F  W  D  L  I  E  V  L  I  S  F  L  S  P  M  L  *  V  M  S  L  S  E  Y  S  I  Q  G  F  G  R  R  E  R  A  L  T  I  L  D  L  D  L  Y  Q  I  R  G  K  V  S  V  S  P  A  T  T  S  V  L  P  C  V  T  E  S  L  L  E  R  G  I  F  L  G  V  M  K  L  L  L  D  Q  L  M  S  P  R  S  L  N  L  L  G  M  M  M  D  M  E  H  T  L  L  R  Q  Q  L  V  Q  L  F  R  V  L  A  F  L  V  M  L  Q  E  L  L  V  E  W  P  I  V  P  E  L  P  C  T  K  F  A  G  L  G  D  V  L  T  L  T  Y  W  Q  G  W  T  K  P  L  M  I  K  L  M  C  F  H  Y  H  L  V  E  A  H  Q  I  T  T  K  I  A  L  Q  L  E  L  L  L  L  W  R  R  V  F  W  F  L  A  L  L  E  M  L  D  L  I  N  S  V  W  P  T  K  H  L  G  S  P  Q  S  V  L  E  Q  L  T  V  I  F  Q  H  M  *  A  L  A  M  V  K  I  S  P  A  F  H  F  T  R  V  I  H  Y  L  I  K  C  F  P  W  C  M  L  V  M  P  A  M  *  P  V  E  I  S  V  *  W  V  P  *  F  L  R  K  L  K  E  K  L  C  C  V  T  E  G  L  A  L  E  S  K  R  V  L  W  *  K  R  L  V  E  P  A  W  F  W  L  T  P  Q  Q  M  G  R  N  *  W  L  T  P  I  Y  F  Q  R  R  R  W  V  K  K  P  V  M  *  S  R  N  I  Y  S  Q  I  L  I  Q  R  P  K  F  F  L  E  E  Q  K  *  T  S  N  R  H  R  L  S  Q  R  S  V  L  E  A  Q  I  Q  S  P  R  R  Y  S  N  R  I  L  S  R  P  V  *  T  F  W  P  V  G  P  E  P  S  A  R  R  G  W  Q  R  T  I  D  G  S  S  S  T  L  S  Q  A  H  P  C  R  V  H  T  *  A  A  W  R  L  *  *  K  E  S  T  Q  N  G  A  P  P  P  F  V  R  R  S  *  P  P  L  T  P  S  T  R  T  A  E  H  *  *  M  S  P  P  E  N  H  L  H  L  S  T  T  A  L  D  T  W  I  P  F  R  Q  *  T  Q  V  L  F  T  T  *  T  P  M  I  T  S  I  S  C  V  H  *  N  T  L  H  H  K  S  T  A  *  R  E  E  T  S  R  V  I  Q  A  K  H  T  A  S  Q  I  *  I  T  L  H  L  L  F  H  S  L  P  G  V  T  V  Q  T  Q  S  S  T  A  G  H  *  L  M  L  D  R  L  E  H  T  K  L  Q  F  L  P  Q  I  V  Q  *  K  L  *  L  S  L  K  H  *  V  S  L  R  L  M  R  R  N  R  I  Q  *  V  L  L  L  H  Q  S  P  Q  L  R  M  Y  S  V  E  L  S  G  Q  M  G  S  M  W  L  V  V  Q  L  Q  F  L  G  H  E  *  Y  E  D  I  A  I  A  S  V  N  F  M  Y  K  L  M  F  F  C  F  *  V  S  F  Q  H  K  S  L  *  L  V  S  R  F  F  Y  G  *  H  E  R  I  K  E  M  Y  A  L  Y  N  I  L  L  T  V  R :   V  S  R  I  P  S  I  V  S  N  S  N  </second_frame>
            <third_frame>   S  T  P  S  Y  *  C  S  S  P  S  E  K  L  I  K  N  V  Y  I  H  T  T  S  C  C  T  C  V  P  M  S  H  V  C  G  N  G  G  E  E  N  I  H  H  S  H  G  *  I  T  N  A  S  N  I  *  *  S  Y  S  L  V  *  R  V  P  Q  I  R  L  *  I  S  R  D  D  L  C  L  *  K  R  C  S  W  F  C  S  K  A  Y  S  S  T  S  *  I  L  R  D  P  T  W  D  S  L  C  F  A  *  A  D  I  P  T  P  H  Y  S  D  T  S  F  F  G  T  *  *  K  C  *  Y  L  S  *  V  R  C  Y  E  *  C  H  C  R  S  T  R  Y  R  G  L  A  G  E  K  E  L  *  R  Y  W  I  W  T  C  T  R  F  V  E  R  *  V  *  V  Q  Q  Q  L  Q  F  C  H  V  *  Q  K  A  C  W  S  E  V  F  F  *  G  L  *  N  Y  S  W  T  N  *  *  V  Q  G  V  *  I  S  *  G  *  *  W  T  W  N  T  H  C  F  D  S  S  W  F  S  C  S  G  C  *  P  F  W  L  C  F  R  N  C  S  W  N  G  L  S  C  Q  S  C  H  V  Q  S  L  L  A  W  G  M  F  *  L  *  H  I  G  R  D  G  Q  S  H  *  *  *  S  *  C  A  F  I  I  T  W  W  K  H  T  R  L  L  Q  R  *  H  C  N  W  S  F  C  C  Y  G  E  G  Y  F  G  F  L  L  C  W  K  C  W  T  *  S  I  Q  F  G  Q  P  S  T  L  D  H  H  S  R  C  W  N  N  *  P  *  F  S  S  I  C  K  P  W  Q  W  *  K  F  L  R  R  F  T  L  R  G  *  F  I  T  *  *  N  A  S  L  G  V  C  W  *  C  Q  Q  C  N  Q  W  K  S  L  Y  D  G  Y  L  N  S  *  E  S  *  R  K  N  C  A  V  *  Q  R  D  *  R  S  S  P  K  G  F  C  G  K  R  G  W  W  S  R  H  G  F  G  *  H  R  S  K  W  G  G  T  S  G  *  R  P  F  T  S  S  G  G  G  G  S  K  S  R  *  C  N  Q  E  I  F  I  L  R  S  *  S  N  G  R  N  S  F  W  R  N  K  S  R  H  R  T  V  T  G  C  R  S  V  Q  F  *  R  P  K  F  N  H  P  G  D  T  Q  T  G  Y  Y  R  A  R  C  K  H  S  G  R  L  D  R  S  R  R  P  D  G  D  G  R  G  R  *  T  G  R  V  Q  H  Y  L  R  H  I  H  V  V  S  T  R  E  R  L  G  G  F  D  K  R  S  P  P  R  M  E  P  R  R  H  S  F  G  A  H  D  L  R  L  H  R  L  Q  E  R  R  S  T  S  R  C  R  H  R  K  T  I  Y  T  F  R  P  R  R  W  T  R  G  S  R  F  G  S  E  P  R  S  C  L  R  H  K  R  R  *  L  P  Q  F  H  V  C  I  E  I  H  S  I  T  N  Q  Q  L  S  E  K  K  L  H  V  *  F  K  Q  N  I  Q  R  H  R  F  E  L  P  F  I  C  C  F  I  R  C  R  E  *  R  F  K  H  N  Q  V  Q  P  D  I  D  *  C  W  T  G  W  N  I  Q  S  Y  S  F  F  P  K  *  F  S  E  N  Y  S  *  A  *  N  I  E  F  H  S  D  *  *  E  E  I  V  Y  S  E  F  Y  C  S  I  K  V  L  S  Y  G  C  I  R  *  N  *  V  V  R  W  E  A  C  G  *  *  S  S  C  N  F  L  V  M  N  N  M  K  T  *  L  *  L  L  L  I  L  C  I  S  *  C  F  S  A  F  K  F  H  S  S  T  K  V  C  S  W  S  Q  D  F  F  M  D  N  M  K  E  S  K  K  C  M  P  Y  T  I  S  C  S  L  Y   : V  Y  L  V  Y  Q  V  S  *  A  I  L  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0053H21.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105758" stop="103488"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>2268</number_coding_nucleotides>
                  <number_encoded_amino_acids>756</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKMSTYTLLVVVLVCLCHMSVAMVEKKTYIIHMAKSQMPAIFDDHTHWYDASLKSVSESAEMIYVYKNVVHGFAARLTARQAESLETQPGILSVLPELIYQLHTTRTPLFLGLDRSVNIFPESDAMSDVIVGVLDTGVWPERKSFDDTGFGPVPDSWKGECESSNNFSSAMCNRKLVGARYFSRGYETTLGPIDESKESKSPRDDDGHGTHTASTAAGSVVQGASLFGYASGTARGMAYRARVAMYKVCWLGGCFNSDILAGMDKAIDDKVDVLSLSLGGSTPDYYKDSIAIGAFAAMEKGILVSCSAGNAGPNQFSLANQAPWITTVGAGTIDRDFPAYVSLGNGKNFSGVSLYAGDSLLNKMLPLVYAGNASNVTSGNLCMMGTLIPEKVKGKIVLCDRGISARVQKGFVVKEAGGAGMVLANTAANGEELVADAHLLPAAAVGQKAGDVIKKYLFSDPNPTAEILFGGTKVDIEPSPVVAAFSSRGPNSITPEILKPDIIAPGVNILAGWTGAVGPTGMAEDDRRVEFNIISGTSMSCPHVSGLAALIKGVHPEWSPAAIRSALMTSAYTVYKNGGALVDVATGKPSTPFDHGAGHVDPVSAVNPGLVYDINADDYLNFMCALKYTPSQINSLARRNFTCDSSKTYSVTDLNYPSFAVSFVAGSDGSNTIKYSRTLTNVGPAGTYKVTVSSPNSSVKIIVEPETLSFTQINEKKSYTVSFTAPSKSSATDVFGRIEWSDGKHVVSSPVAISWS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="-" PGL_start="110980" PGL_stop="109276"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="110980" e_stop="109276"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="110980" e_stop="109276" e_length="1705"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110980" stop="110213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554213" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110725" stop="109849"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553607" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110673" stop="109937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110489" stop="109579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110449" stop="109579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110448" stop="109733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702073" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110130" stop="109276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110130" stop="109307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705470" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCCTTTTTGGTTATGCTTCAGGAACTGCTCGTGGAATGGCTTATCGTGCCAGAGTTGCCGTCTACAAGGTTTGCTGGCTTGGGAAATGCTTTGGCCCCGACATATTGGCAGGTATGGACAAAGCCATTGATGATAATGTTAATGTGCTTTCATTATCACTTGGTGGAGAGCATTTTGATTTCTACAGCGACGATGTTGCAATTGGAGCATTTGCTGCAATGGAGAAGGGTATTATGGTTTCTTGCTCTGCTGGAAATGCTGGACCCAATCAATTCAGTTTGGCTAACCAAGCACCTTGGATCACCACCGTGGGTGCCGGAACAGTTGACCGTGATTTTCCAGCATATGTAAGCCTTGGCAATGGTAAAAATTTCTCCGGTGTTTCACTTTACGCGGGTGATCCATTACCCAGTGGGATGCTTCCCTTGGTGTATGCAGGTAATGCCAGCAATGCAACCAATGGAAATCTCTGTATAATGGGAACCTTAATTCCTGAGAAAGTTAAAGGCAAAATTGTGCTGTGTGACGGAGGGGTTAACGTCAGAGCTGAAAAGGGTTATGTGGTAAAATCAGCCGGTGGAGCCGGCATGATTTTTGCTAACACAAATGGGCTGGGGCTACTGGCTGACGCCCATTTACTTCCAGCGGCGGCTGTGGGTCAATTAGATGGCGATGAAATCAAGAAGTATATAACATCAGATCCTAATCCAACGGCCACGATTCTTTTTGGAGGAACAATGGTAGGAGTCCAACCAGCACCGATTCTTGCAGCGTTCAGTTCCAGAGGCCCAAATTCCATCACGCCGGAGATACTTAAGCCGGATATCATCGCGCCAGGTGTCAATATTCTGGCCGGTTGGAGCGGTGCAGTCGGTCCTACGGGGTTGCCTGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAGGCACATCCATGTCGTGTCCACACGTGAGTGGCTTAGCGGCTTTGCTCAAAGGAGTCCACCCAGAATGGAGCCCCGCCGCCATTCGTTCGGCGCTCATGACCACCGCTTACACCACCTACAGGAACGGCGGAGCACTACTAGACGTAGCTACCGGAAAACCATCTACACCTTTCGGTCACGGCGCTGGGCACGTGGATCCCGTTTCAGCGGTGAACCCAGGTCTTGTTTACGACATAAACGCCGATGATTACCTCAATTTCCTGTGTGCATTGAAATACAGTCCATCACAAATCAATATCATAGCAAGAAGAAACTTCACATGTGATTCAAGCAAAATATACAGCGTCACAGATTTGAATTACCCTTCGTTTTCAGTTGCATTCCCTGCCGATACCGGTTCAAACACAATCAGATACAGCCGGACACTGACTAATGTTGGACCGTCTGGAACATACAAAGTTGCTGTTACTTTGCCCGATAGTTCCGTGGAAATTATAGTTGAACCTGAAACAGTTAGTTTTACTCAGATTAATGAGAAGATATCGTATAGTGTGAGTTTTACTGCTCCATCAAAGCCCCCATCTACCAATGTATTCGGCAAAATTGAGTGGTCAGATGGGACGCATTTGGTCACTAGTCCAGTTGCAATTTCTTGGTCATGAATTATATGAACAAATTAAAGAGCTATATATAGCTGCTATCGATTTAATGTAAAGTTAATCAAAGAAATTTATGCTTCTTGCTCACAGTGCAGTGATGTTTCGTACCAAGTATTGTA</gDNA_template>
            <first_frame> A  F  L  V  M  L  Q  E  L  L  V  E  W  L  I  V  P  E  L  P  S  T  R  F  A  G  L  G  N  A  L  A  P  T  Y  W  Q  V  W  T  K  P  L  M  I  M  L  M  C  F  H  Y  H  L  V  E  S  I  L  I  S  T  A  T  M  L  Q  L  E  H  L  L  Q  W  R  R  V  L  W  F  L  A  L  L  E  M  L  D  P  I  N  S  V  W  L  T  K  H  L  G  S  P  P  W  V  P  E  Q  L  T  V  I  F  Q  H  M  *  A  L  A  M  V  K  I  S  P  V  F  H  F  T  R  V  I  H  Y  P  V  G  C  F  P  W  C  M  Q  V  M  P  A  M  Q  P  M  E  I  S  V  *  W  E  P  *  F  L  R  K  L  K  A  K  L  C  C  V  T  E  G  L  T  S  E  L  K  R  V  M  W  *  N  Q  P  V  E  P  A  *  F  L  L  T  Q  M  G  W  G  Y  W  L  T  P  I  Y  F  Q  R  R  L  W  V  N  *  M  A  M  K  S  R  S  I  *  H  Q  I  L  I  Q  R  P  R  F  F  L  E  E  Q  W  *  E  S  N  Q  H  R  F  L  Q  R  S  V  P  E  A  Q  I  P  S  R  R  R  Y  L  S  R  I  S  S  R  Q  V  S  I  F  W  P  V  G  A  V  Q  S  V  L  R  G  C  L  R  T  I  D  G  S  S  S  T  L  S  Q  A  H  P  C  R  V  H  T  *  V  A  *  R  L  C  S  K  E  S  T  Q  N  G  A  P  P  P  F  V  R  R  S  *  P  P  L  T  P  P  T  G  T  A  E  H  Y  *  T  *  L  P  E  N  H  L  H  L  S  V  T  A  L  G  T  W  I  P  F  Q  R  *  T  Q  V  L  F  T  T  *  T  P  M  I  T  S  I  S  C  V  H  *  N  T  V  H  H  K  S  I  S  *  Q  E  E  T  S  H  V  I  Q  A  K  Y  T  A  S  Q  I  *  I  T  L  R  F  Q  L  H  S  L  P  I  P  V  Q  T  Q  S  D  T  A  G  H  *  L  M  L  D  R  L  E  H  T  K  L  L  L  L  C  P  I  V  P  W  K  L  *  L  N  L  K  Q  L  V  L  L  R  L  M  R  R  Y  R  I  V  *  V  L  L  L  H  Q  S  P  H  L  P  M  Y  S  A  K  L  S  G  Q  M  G  R  I  W  S  L  V  Q  L  Q  F  L  G  H  E  L  Y  E  Q  I  K  E  L  Y  I  A  A  I  D  L  M  *  S  *  S  K  K  F  M  L  L  A  H  S  A  V  M  F  R  T  K  Y  C  </first_frame>
            <second_frame>  P  F  W  L  C  F  R  N  C  S  W  N  G  L  S  C  Q  S  C  R  L  Q  G  L  L  A  W  E  M  L  W  P  R  H  I  G  R  Y  G  Q  S  H  *  *  *  C  *  C  A  F  I  I  T  W  W  R  A  F  *  F  L  Q  R  R  C  C  N  W  S  I  C  C  N  G  E  G  Y  Y  G  F  L  L  C  W  K  C  W  T  Q  S  I  Q  F  G  *  P  S  T  L  D  H  H  R  G  C  R  N  S  *  P  *  F  S  S  I  C  K  P  W  Q  W  *  K  F  L  R  C  F  T  L  R  G  *  S  I  T  Q  W  D  A  S  L  G  V  C  R  *  C  Q  Q  C  N  Q  W  K  S  L  Y  N  G  N  L  N  S  *  E  S  *  R  Q  N  C  A  V  *  R  R  G  *  R  Q  S  *  K  G  L  C  G  K  I  S  R  W  S  R  H  D  F  C  *  H  K  W  A  G  A  T  G  *  R  P  F  T  S  S  G  G  C  G  S  I  R  W  R  *  N  Q  E  V  Y  N  I  R  S  *  S  N  G  H  D  S  F  W  R  N  N  G  R  S  P  T  S  T  D  S  C  S  V  Q  F  Q  R  P  K  F  H  H  A  G  D  T  *  A  G  Y  H  R  A  R  C  Q  Y  S  G  R  L  E  R  C  S  R  S  Y  G  V  A  *  G  R  *  T  G  R  V  Q  H  Y  L  R  H  I  H  V  V  S  T  R  E  W  L  S  G  F  A  Q  R  S  P  P  R  M  E  P  R  R  H  S  F  G  A  H  D  H  R  L  H  H  L  Q  E  R  R  S  T  T  R  R  S  Y  R  K  T  I  Y  T  F  R  S  R  R  W  A  R  G  S  R  F  S  G  E  P  R  S  C  L  R  H  K  R  R  *  L  P  Q  F  P  V  C  I  E  I  Q  S  I  T  N  Q  Y  H  S  K  K  K  L  H  M  *  F  K  Q  N  I  Q  R  H  R  F  E  L  P  F  V  F  S  C  I  P  C  R  Y  R  F  K  H  N  Q  I  Q  P  D  T  D  *  C  W  T  V  W  N  I  Q  S  C  C  Y  F  A  R  *  F  R  G  N  Y  S  *  T  *  N  S  *  F  Y  S  D  *  *  E  D  I  V  *  C  E  F  Y  C  S  I  K  A  P  I  Y  Q  C  I  R  Q  N  *  V  V  R  W  D  A  F  G  H  *  S  S  C  N  F  L  V  M  N  Y  M  N  K  L  K  S  Y  I  *  L  L  S  I  *  C  K  V  N  Q  R  N  L  C  F  L  L  T  V  Q  *  C  F  V  P  S  I  V </second_frame>
            <third_frame>   L  F  G  Y  A  S  G  T  A  R  G  M  A  Y  R  A  R  V  A  V  Y  K  V  C  W  L  G  K  C  F  G  P  D  I  L  A  G  M  D  K  A  I  D  D  N  V  N  V  L  S  L  S  L  G  G  E  H  F  D  F  Y  S  D  D  V  A  I  G  A  F  A  A  M  E  K  G  I  M  V  S  C  S  A  G  N  A  G  P  N  Q  F  S  L  A  N  Q  A  P  W  I  T  T  V  G  A  G  T  V  D  R  D  F  P  A  Y  V  S  L  G  N  G  K  N  F  S  G  V  S  L  Y  A  G  D  P  L  P  S  G  M  L  P  L  V  Y  A  G  N  A  S  N  A  T  N  G  N  L  C  I  M  G  T  L  I  P  E  K  V  K  G  K  I  V  L  C  D  G  G  V  N  V  R  A  E  K  G  Y  V  V  K  S  A  G  G  A  G  M  I  F  A  N  T  N  G  L  G  L  L  A  D  A  H  L  L  P  A  A  A  V  G  Q  L  D  G  D  E  I  K  K  Y  I  T  S  D  P  N  P  T  A  T  I  L  F  G  G  T  M  V  G  V  Q  P  A  P  I  L  A  A  F  S  S  R  G  P  N  S  I  T  P  E  I  L  K  P  D  I  I  A  P  G  V  N  I  L  A  G  W  S  G  A  V  G  P  T  G  L  P  E  D  D  R  R  V  E  F  N  I  I  S  G  T  S  M  S  C  P  H  V  S  G  L  A  A  L  L  K  G  V  H  P  E  W  S  P  A  A  I  R  S  A  L  M  T  T  A  Y  T  T  Y  R  N  G  G  A  L  L  D  V  A  T  G  K  P  S  T  P  F  G  H  G  A  G  H  V  D  P  V  S  A  V  N  P  G  L  V  Y  D  I  N  A  D  D  Y  L  N  F  L  C  A  L  K  Y  S  P  S  Q  I  N  I  I  A  R  R  N  F  T  C  D  S  S  K  I  Y  S  V  T  D  L  N  Y  P  S  F  S  V  A  F  P  A  D  T  G  S  N  T  I  R  Y  S  R  T  L  T  N  V  G  P  S  G  T  Y  K  V  A  V  T  L  P  D  S  S  V  E  I  I  V  E  P  E  T  V  S  F  T  Q  I  N  E  K  I  S  Y  S  V  S  F  T  A  P  S  K  P  P  S  T  N  V  F  G  K  I  E  W  S  D  G  T  H  L  V  T  S  P  V  A  I  S  W  S  *  I  I  *  T  N  *  R  A  I  Y  S  C  Y  R  F  N  V  K  L  I  K  E  I  Y  A  S  C  S  Q  C  S  D  V  S  Y  Q  V  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0053H21.1" strand="-"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110978" stop="109392"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1584</number_coding_nucleotides>
                  <number_encoded_amino_acids>528</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFGYASGTARGMAYRARVAVYKVCWLGKCFGPDILAGMDKAIDDNVNVLSLSLGGEHFDFYSDDVAIGAFAAMEKGIMVSCSAGNAGPNQFSLANQAPWITTVGAGTVDRDFPAYVSLGNGKNFSGVSLYAGDPLPSGMLPLVYAGNASNATNGNLCIMGTLIPEKVKGKIVLCDGGVNVRAEKGYVVKSAGGAGMIFANTNGLGLLADAHLLPAAAVGQLDGDEIKKYITSDPNPTATILFGGTMVGVQPAPILAAFSSRGPNSITPEILKPDIIAPGVNILAGWSGAVGPTGLPEDDRRVEFNIISGTSMSCPHVSGLAALLKGVHPEWSPAAIRSALMTTAYTTYRNGGALLDVATGKPSTPFGHGAGHVDPVSAVNPGLVYDINADDYLNFLCALKYSPSQINIIARRNFTCDSSKIYSVTDLNYPSFSVAFPADTGSNTIRYSRTLTNVGPSGTYKVAVTLPDSSVEIIVEPETVSFTQINEKISYSVSFTAPSKPPSTNVFGKIEWSDGTHLVTSPVAISWS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="+" PGL_start="112939" PGL_stop="113427"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="112939" e_stop="113427"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="112939" e_stop="113427" e_length="489"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112939" stop="113427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253292" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATCACAACTTTCAAGTTTGGTTTTTTGGTTAGAGTTCGTTAACAGGCAAAAAGAAGCTTAATCCGAATGATGGCAAGAATTATATAGATATATAATGATATTAGTTAGTAAACCAACTACCAAATGTATGCGTAATTTTTTTTTCTTTTTTGTATATTAAGTTGTGGTGCATAGTGTTTCATCCTTAACTAGAGATTTTATGTTCGAGCTCAAGTATGAAAGAAAATTTTGTTGGGAGCATCACCTCGAATGGATCTTACAAAGCGCAATTCAAATTCGATCGAAGCTCCAATACGGATTTTGAACACTTTGGCCGAAAAAAAAAGCTTTTTGGATATTTTCTTTCTTTCTTTGTAGGATACATGCAAGAAAATATGTATCGACAGTTTTCTCTTTATATGTCCTATTGATTGTAGTTACCTTGAAGATTTTGTACAAGGCTCCATTTGGGAATATTTTGCAAATTATCTTATCATGTTTGTTATATA</gDNA_template>
            <first_frame> Y  H  N  F  Q  V  W  F  F  G  *  S  S  L  T  G  K  K  K  L  N  P  N  D  G  K  N  Y  I  D  I  *  *  Y  *  L  V  N  Q  L  P  N  V  C  V  I  F  F  S  F  L  Y  I  K  L  W  C  I  V  F  H  P  *  L  E  I  L  C  S  S  S  S  M  K  E  N  F  V  G  S  I  T  S  N  G  S  Y  K  A  Q  F  K  F  D  R  S  S  N  T  D  F  E  H  F  G  R  K  K  K  L  F  G  Y  F  L  S  F  F  V  G  Y  M  Q  E  N  M  Y  R  Q  F  S  L  Y  M  S  Y  *  L  *  L  P  *  R  F  C  T  R  L  H  L  G  I  F  C  K  L  S  Y  H  V  C  Y  I </first_frame>
            <second_frame>  I  T  T  F  K  F  G  F  L  V  R  V  R  *  Q  A  K  R  S  L  I  R  M  M  A  R  I  I  *  I  Y  N  D  I  S  *  *  T  N  Y  Q  M  Y  A  *  F  F  F  L  F  C  I  L  S  C  G  A  *  C  F  I  L  N  *  R  F  Y  V  R  A  Q  V  *  K  K  I  L  L  G  A  S  P  R  M  D  L  T  K  R  N  S  N  S  I  E  A  P  I  R  I  L  N  T  L  A  E  K  K  S  F  L  D  I  F  F  L  S  L  *  D  T  C  K  K  I  C  I  D  S  F  L  F  I  C  P  I  D  C  S  Y  L  E  D  F  V  Q  G  S  I  W  E  Y  F  A  N  Y  L  I  M  F  V  I   </second_frame>
            <third_frame>   S  Q  L  S  S  L  V  F  W  L  E  F  V  N  R  Q  K  E  A  *  S  E  *  W  Q  E  L  Y  R  Y  I  M  I  L  V  S  K  P  T  T  K  C  M  R  N  F  F  F  F  F  V  Y  *  V  V  V  H  S  V  S  S  L  T  R  D  F  M  F  E  L  K  Y  E  R  K  F  C  W  E  H  H  L  E  W  I  L  Q  S  A  I  Q  I  R  S  K  L  Q  Y  G  F  *  T  L  W  P  K  K  K  A  F  W  I  F  S  F  F  L  C  R  I  H  A  R  K  Y  V  S  T  V  F  S  L  Y  V  L  L  I  V  V  T  L  K  I  L  Y  K  A  P  F  G  N  I  L  Q  I  I  L  S  C  L  L  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0053H21.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113128" stop="113349"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LEILCSSSSMKENFVGSITSNGSYKAQFKFDRSSNTDFEHFGRKKKLFGYFLSFFVGYMQENMYRQFSLYMSY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="-" PGL_start="121111" PGL_stop="117904"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="121111" e_stop="120787"/>
            <exon e_start="120301" e_stop="120149"/>
            <exon e_start="119972" e_stop="119895"/>
            <exon e_start="119726" e_stop="119631"/>
            <exon e_start="118791" e_stop="118756"/>
            <exon e_start="118642" e_stop="118461"/>
            <exon e_start="118383" e_stop="118058"/>
            <exon e_start="117937" e_stop="117904"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.115" e_score="0.997"/>
          <exon-intron don_prob="0.997" acc_prob="0.849" e_score="1.000"/>
          <exon-intron don_prob="0.831" acc_prob="0.341" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.334" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.987"/>
          <exon-only e_score="0.676"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="121111" e_stop="120787" e_length="325"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.115">
            <gDNA_intron_boundary i_start="120786" i_stop="120302" i_length="485"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="120301" e_stop="120149" e_length="153"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.849">
            <gDNA_intron_boundary i_start="120148" i_stop="119973" i_length="176"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="119972" e_stop="119895" e_length="78"/>
          </exon>
          <intron i_serial="3" don_prob="0.831" acc_prob="0.341">
            <gDNA_intron_boundary i_start="119894" i_stop="119727" i_length="168"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="119726" e_stop="119631" e_length="96"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.995">
            <gDNA_intron_boundary i_start="119630" i_stop="118792" i_length="839"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="118791" e_stop="118756" e_length="36"/>
          </exon>
          <intron i_serial="5" don_prob="0.959" acc_prob="0.334">
            <gDNA_intron_boundary i_start="118755" i_stop="118643" i_length="113"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="118642" e_stop="118461" e_length="182"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="118460" i_stop="118384" i_length="77"/>
          </intron>
          <exon e_serial="7" e_score="0.987">
            <gDNA_exon_boundary e_start="118383" e_stop="118058" e_length="326"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="118057" i_stop="117938" i_length="120"/>
          </intron>
          <exon e_serial="8" e_score="0.676">
            <gDNA_exon_boundary e_start="117937" e_stop="117904" e_length="34"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121111" stop="120787"/>
              <exon start="120301" stop="120149"/>
              <exon start="119972" stop="119895"/>
              <exon start="119726" stop="119715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299176" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121096" stop="120787"/>
              <exon start="120301" stop="120149"/>
              <exon start="119972" stop="119895"/>
              <exon start="119726" stop="119631"/>
              <exon start="118791" stop="118758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730712" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121090" stop="120787"/>
              <exon start="120301" stop="120149"/>
              <exon start="119972" stop="119967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121088" stop="120879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121088" stop="120880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735838" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121087" stop="120879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735350" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121087" stop="120880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121085" stop="120787"/>
              <exon start="120301" stop="120149"/>
              <exon start="119972" stop="119895"/>
              <exon start="119726" stop="119631"/>
              <exon start="118791" stop="118756"/>
              <exon start="118642" stop="118558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327449" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121084" stop="120880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735378" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121076" stop="120787"/>
              <exon start="120301" stop="120149"/>
              <exon start="119972" stop="119895"/>
              <exon start="119726" stop="119640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252133" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121055" stop="120787"/>
              <exon start="120301" stop="120149"/>
              <exon start="119972" stop="119895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121053" stop="120787"/>
              <exon start="120301" stop="120149"/>
              <exon start="119972" stop="119895"/>
              <exon start="119726" stop="119639"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121032" stop="120787"/>
              <exon start="120301" stop="120149"/>
              <exon start="119972" stop="119895"/>
              <exon start="119726" stop="119635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259441" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121032" stop="120787"/>
              <exon start="120301" stop="120149"/>
              <exon start="119972" stop="119895"/>
              <exon start="119726" stop="119679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121032" stop="120854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368226" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121030" stop="120787"/>
              <exon start="120301" stop="120149"/>
              <exon start="119972" stop="119895"/>
              <exon start="119726" stop="119708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121028" stop="120787"/>
              <exon start="120301" stop="120149"/>
              <exon start="119972" stop="119895"/>
              <exon start="119726" stop="119631"/>
              <exon start="118791" stop="118756"/>
              <exon start="118642" stop="118461"/>
              <exon start="118383" stop="118264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740443" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121027" stop="120787"/>
              <exon start="120301" stop="120149"/>
              <exon start="119972" stop="119895"/>
              <exon start="119726" stop="119631"/>
              <exon start="118791" stop="118756"/>
              <exon start="118642" stop="118461"/>
              <exon start="118383" stop="118304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740389" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121019" stop="120787"/>
              <exon start="120301" stop="120149"/>
              <exon start="119972" stop="119895"/>
              <exon start="119726" stop="119631"/>
              <exon start="118791" stop="118756"/>
              <exon start="118642" stop="118461"/>
              <exon start="118383" stop="118287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121019" stop="120787"/>
              <exon start="120301" stop="120149"/>
              <exon start="119972" stop="119895"/>
              <exon start="119726" stop="119631"/>
              <exon start="118791" stop="118756"/>
              <exon start="118642" stop="118508"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729298" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121004" stop="120787"/>
              <exon start="120301" stop="120149"/>
              <exon start="119972" stop="119895"/>
              <exon start="119726" stop="119631"/>
              <exon start="118791" stop="118756"/>
              <exon start="118642" stop="118461"/>
              <exon start="118383" stop="118305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735627" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121003" stop="120787"/>
              <exon start="120301" stop="120149"/>
              <exon start="119972" stop="119895"/>
              <exon start="119726" stop="119631"/>
              <exon start="118791" stop="118756"/>
              <exon start="118642" stop="118461"/>
              <exon start="118383" stop="118289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735421" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121002" stop="120787"/>
              <exon start="120301" stop="120149"/>
              <exon start="119972" stop="119895"/>
              <exon start="119726" stop="119631"/>
              <exon start="118791" stop="118756"/>
              <exon start="118642" stop="118461"/>
              <exon start="118383" stop="118269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120984" stop="120787"/>
              <exon start="120301" stop="120149"/>
              <exon start="119972" stop="119895"/>
              <exon start="119726" stop="119631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348117" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120984" stop="120787"/>
              <exon start="120301" stop="120149"/>
              <exon start="119972" stop="119895"/>
              <exon start="119726" stop="119643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120953" stop="120787"/>
              <exon start="120301" stop="120149"/>
              <exon start="119972" stop="119895"/>
              <exon start="119726" stop="119631"/>
              <exon start="118791" stop="118756"/>
              <exon start="118642" stop="118461"/>
              <exon start="118383" stop="118237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120953" stop="120787"/>
              <exon start="120301" stop="120149"/>
              <exon start="119972" stop="119895"/>
              <exon start="119726" stop="119631"/>
              <exon start="118791" stop="118756"/>
              <exon start="118642" stop="118461"/>
              <exon start="118383" stop="118340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120942" stop="120787"/>
              <exon start="120301" stop="120149"/>
              <exon start="119972" stop="119895"/>
              <exon start="119726" stop="119631"/>
              <exon start="118791" stop="118756"/>
              <exon start="118642" stop="118461"/>
              <exon start="118383" stop="118243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120892" stop="120787"/>
              <exon start="120301" stop="120149"/>
              <exon start="119972" stop="119895"/>
              <exon start="119726" stop="119631"/>
              <exon start="118791" stop="118756"/>
              <exon start="118642" stop="118568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278922" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120215" stop="120149"/>
              <exon start="119972" stop="119895"/>
              <exon start="119726" stop="119631"/>
              <exon start="118791" stop="118756"/>
              <exon start="118642" stop="118470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291353" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119947" stop="119895"/>
              <exon start="119726" stop="119631"/>
              <exon start="118791" stop="118756"/>
              <exon start="118642" stop="118461"/>
              <exon start="118383" stop="118069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577461" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119906" stop="119895"/>
              <exon start="119726" stop="119631"/>
              <exon start="118791" stop="118756"/>
              <exon start="118642" stop="118461"/>
              <exon start="118383" stop="118125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119906" stop="119895"/>
              <exon start="119726" stop="119631"/>
              <exon start="118791" stop="118756"/>
              <exon start="118642" stop="118461"/>
              <exon start="118383" stop="118125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118791" stop="118756"/>
              <exon start="118642" stop="118461"/>
              <exon start="118383" stop="118104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733301" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118577" stop="118461"/>
              <exon start="118383" stop="118069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118463" stop="118461"/>
              <exon start="118383" stop="118058"/>
              <exon start="117937" stop="117904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222654" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTTTCCATCACGTATGATGCATGGTCAAAAAAAAAAAAGAACTTCTATCTAGCTACTTTTTCTTCTGAATTCTATGGTTGCAAGAAAATTCACAAATGCTAAGGCTAAATTTATATGGCTCCATAGTTTCTAGTCCGATAGAAGTCAACAAAAGCTGCCGCTCGTGGATCATTTTATCGAACAAAGCAACGATTGTATGTCGGAGGAACATTCGAGTTAAAGCCCTGAAAGATGGGATGAACGGTGGCACGAATGGCAGTGGATTAGGTGGTCGTAGTTGGGACCCAGGCTTGGAAATTGAGGTGCCATTTGAACAAAGGCCG : GTGAATGAGTACTCATCTCTGAAAGATGAAACTTTATACTCTTGGGCAGAACTGGGTCCAGGGGCCTTCTTCCTACGTCTCGGGGGACTTTGGTTAGTCACTTTCGCAGTTTTGGGAGTACCTATTGCTGCTGCAAGCTTCAATCCTTCAAAG : GATCCTTTAAGATTTCTCCTGGCTGCAAGTACGGGGACTCTTTTTCTTGTTGCACTGATTGTCCTAAGAATTTATCTG : GGATGGAGCTATGTTGGAGATAGGCTTTTATCAGCAGTTATACCTTATGAAGAGACTGGATGGTATGATGGGCAGATGTGGGTGAAGCCCCCAGAG : ATCTTAGCTCGGGATAGGCTGTTGGGATCTTATAAG : GTGAAACCAGTCATTAAAATGCTGAAGCAAACGCTAGTTGGAACAGGGGCTTTGCTTGTTGCAGCAGTCTCATTATTCATATTTGCAACACCAGTAGAAGATTTTTTCCGCAATACTTTCACAACAAACGAGAACTCATTGAGTTCCACCTCAACAAACAGCACAAATAAACTAGGCATCAG : GAAAGAAGAACTGTTGCGCTTGCCACTGGAAGTCAAGGAGGACGATGATCTAGCAAAAGCTGCCGCTGAAGCAGCTGATGGAAGGCCAGTTTACTGCAGAGATAGGTATTATCGTGCATTGGCCGGTGGACAGTACTGCAAATGGGAAGACTTAGTTAAATAAGAGGATATATATAAGTGAAGAAAGCTACAGTTAAATTCTGTGATTGCTCAAAAGATCTGTACAATTGAGCCTCTTCTTATAATTTTAACGAAGAAATTTTGATGTTTTATGCATTAGATAATGCGCATGCAAAGAACAAAAGAAAGAGAATCATAACCCAAAA : AAAACTAACAAATACCACAAAAATAAAGCATTAT</gDNA_template>
            <first_frame> N  F  P  S  R  M  M  H  G  Q  K  K  K  R  T  S  I  *  L  L  F  L  L  N  S  M  V  A  R  K  F  T  N  A  K  A  K  F  I  W  L  H  S  F  *  S  D  R  S  Q  Q  K  L  P  L  V  D  H  F  I  E  Q  S  N  D  C  M  S  E  E  H  S  S  *  S  P  E  R  W  D  E  R  W  H  E  W  Q  W  I  R  W  S  *  L  G  P  R  L  G  N  *  G  A  I  *  T  K  A   : G  E  *  V  L  I  S  E  R  *  N  F  I  L  L  G  R  T  G  S  R  G  L  L  P  T  S  R  G  T  L  V  S  H  F  R  S  F  G  S  T  Y  C  C  C  K  L  Q  S  F  K   : G  S  F  K  I  S  P  G  C  K  Y  G  D  S  F  S  C  C  T  D  C  P  K  N  L  S   : G  M  E  L  C  W  R  *  A  F  I  S  S  Y  T  L  *  R  D  W  M  V  *  W  A  D  V  G  E  A  P  R   : D  L  S  S  G  *  A  V  G  I  L  *   : G  E  T  S  H  *  N  A  E  A  N  A  S  W  N  R  G  F  A  C  C  S  S  L  I  I  H  I  C  N  T  S  R  R  F  F  P  Q  Y  F  H  N  K  R  E  L  I  E  F  H  L  N  K  Q  H  K  *  T  R  H  Q  :  E  R  R  T  V  A  L  A  T  G  S  Q  G  G  R  *  S  S  K  S  C  R  *  S  S  *  W  K  A  S  L  L  Q  R  *  V  L  S  C  I  G  R  W  T  V  L  Q  M  G  R  L  S  *  I  R  G  Y  I  *  V  K  K  A  T  V  K  F  C  D  C  S  K  D  L  Y  N  *  A  S  S  Y  N  F  N  E  E  I  L  M  F  Y  A  L  D  N  A  H  A  K  N  K  R  K  R  I  I  T  Q  K :   K  L  T  N  T  T  K  I  K  H  Y </first_frame>
            <second_frame>  I  F  H  H  V  *  C  M  V  K  K  K  K  E  L  L  S  S  Y  F  F  F  *  I  L  W  L  Q  E  N  S  Q  M  L  R  L  N  L  Y  G  S  I  V  S  S  P  I  E  V  N  K  S  C  R  S  W  I  I  L  S  N  K  A  T  I  V  C  R  R  N  I  R  V  K  A  L  K  D  G  M  N  G  G  T  N  G  S  G  L  G  G  R  S  W  D  P  G  L  E  I  E  V  P  F  E  Q  R  P  :  V  N  E  Y  S  S  L  K  D  E  T  L  Y  S  W  A  E  L  G  P  G  A  F  F  L  R  L  G  G  L  W  L  V  T  F  A  V  L  G  V  P  I  A  A  A  S  F  N  P  S  K  :  D  P  L  R  F  L  L  A  A  S  T  G  T  L  F  L  V  A  L  I  V  L  R  I  Y  L  :  G  W  S  Y  V  G  D  R  L  L  S  A  V  I  P  Y  E  E  T  G  W  Y  D  G  Q  M  W  V  K  P  P  E  :  I  L  A  R  D  R  L  L  G  S  Y  K  :  V  K  P  V  I  K  M  L  K  Q  T  L  V  G  T  G  A  L  L  V  A  A  V  S  L  F  I  F  A  T  P  V  E  D  F  F  R  N  T  F  T  T  N  E  N  S  L  S  S  T  S  T  N  S  T  N  K  L  G  I  R :   K  E  E  L  L  R  L  P  L  E  V  K  E  D  D  D  L  A  K  A  A  A  E  A  A  D  G  R  P  V  Y  C  R  D  R  Y  Y  R  A  L  A  G  G  Q  Y  C  K  W  E  D  L  V  K  *  E  D  I  Y  K  *  R  K  L  Q  L  N  S  V  I  A  Q  K  I  C  T  I  E  P  L  L  I  I  L  T  K  K  F  *  C  F  M  H  *  I  M  R  M  Q  R  T  K  E  R  E  S  *  P  K   : K  N  *  Q  I  P  Q  K  *  S  I   </second_frame>
            <third_frame>   F  S  I  T  Y  D  A  W  S  K  K  K  K  N  F  Y  L  A  T  F  S  S  E  F  Y  G  C  K  K  I  H  K  C  *  G  *  I  Y  M  A  P  *  F  L  V  R  *  K  S  T  K  A  A  A  R  G  S  F  Y  R  T  K  Q  R  L  Y  V  G  G  T  F  E  L  K  P  *  K  M  G  *  T  V  A  R  M  A  V  D  *  V  V  V  V  G  T  Q  A  W  K  L  R  C  H  L  N  K  G  R :   *  M  S  T  H  L  *  K  M  K  L  Y  T  L  G  Q  N  W  V  Q  G  P  S  S  Y  V  S  G  D  F  G  *  S  L  S  Q  F  W  E  Y  L  L  L  L  Q  A  S  I  L  Q  R :   I  L  *  D  F  S  W  L  Q  V  R  G  L  F  F  L  L  H  *  L  S  *  E  F  I  W :   D  G  A  M  L  E  I  G  F  Y  Q  Q  L  Y  L  M  K  R  L  D  G  M  M  G  R  C  G  *  S  P  Q  R :   S  *  L  G  I  G  C  W  D  L  I  R :   *  N  Q  S  L  K  C  *  S  K  R  *  L  E  Q  G  L  C  L  L  Q  Q  S  H  Y  S  Y  L  Q  H  Q  *  K  I  F  S  A  I  L  S  Q  Q  T  R  T  H  *  V  P  P  Q  Q  T  A  Q  I  N  *  A  S   : G  K  K  N  C  C  A  C  H  W  K  S  R  R  T  M  I  *  Q  K  L  P  L  K  Q  L  M  E  G  Q  F  T  A  E  I  G  I  I  V  H  W  P  V  D  S  T  A  N  G  K  T  *  L  N  K  R  I  Y  I  S  E  E  S  Y  S  *  I  L  *  L  L  K  R  S  V  Q  L  S  L  F  L  *  F  *  R  R  N  F  D  V  L  C  I  R  *  C  A  C  K  E  Q  K  K  E  N  H  N  P  K  :  K  T  N  K  Y  H  K  N  K  A  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0053H21.1" strand="-"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="121041" stop="120787"/>
                    <exon start="120301" stop="120149"/>
                    <exon start="119972" stop="119895"/>
                    <exon start="119726" stop="119631"/>
                    <exon start="118791" stop="118756"/>
                    <exon start="118642" stop="118461"/>
                    <exon start="118383" stop="118221"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>960</number_coding_nucleotides>
                  <number_encoded_amino_acids>320</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILWLQENSQMLRLNLYGSIVSSPIEVNKSCRSWIILSNKATIVCRRNIRVKALKDGMNGGTNGSGLGGRSWDPGLEIEVPFEQRPVNEYSSLKDETLYSWAELGPGAFFLRLGGLWLVTFAVLGVPIAAASFNPSKDPLRFLLAASTGTLFLVALIVLRIYLGWSYVGDRLLSAVIPYEETGWYDGQMWVKPPEILARDRLLGSYKVKPVIKMLKQTLVGTGALLVAAVSLFIFATPVEDFFRNTFTTNENSLSSTSTNSTNKLGIRKEELLRLPLEVKEDDDLAKAAAEAADGRPVYCRDRYYRALAGGQYCKWEDLVK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="24" PGL_strand="+" PGL_start="126794" PGL_stop="132047"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="126807" e_stop="126943"/>
            <exon e_start="127014" e_stop="127130"/>
            <exon e_start="128018" e_stop="128175"/>
            <exon e_start="128540" e_stop="128642"/>
            <exon e_start="129834" e_stop="129929"/>
            <exon e_start="130547" e_stop="130612"/>
            <exon e_start="130702" e_stop="130821"/>
            <exon e_start="131647" e_stop="132047"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.983" acc_prob="0.637" e_score="0.993"/>
          <exon-intron don_prob="0.998" acc_prob="0.949" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.383" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.942" e_score="0.983"/>
          <exon-intron don_prob="0.879" acc_prob="0.890" e_score="1.000"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="126807" e_stop="126943" e_length="137"/>
          </exon>
          <intron i_serial="1" don_prob="0.983" acc_prob="0.637">
            <gDNA_intron_boundary i_start="126944" i_stop="127013" i_length="70"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="127014" e_stop="127130" e_length="117"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.949">
            <gDNA_intron_boundary i_start="127131" i_stop="128017" i_length="887"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="128018" e_stop="128175" e_length="158"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.967">
            <gDNA_intron_boundary i_start="128176" i_stop="128539" i_length="364"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="128540" e_stop="128642" e_length="103"/>
          </exon>
          <intron i_serial="4" don_prob="0.952" acc_prob="0.968">
            <gDNA_intron_boundary i_start="128643" i_stop="129833" i_length="1191"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="129834" e_stop="129929" e_length="96"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.383">
            <gDNA_intron_boundary i_start="129930" i_stop="130546" i_length="617"/>
          </intron>
          <exon e_serial="6" e_score="0.983">
            <gDNA_exon_boundary e_start="130547" e_stop="130612" e_length="66"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.942">
            <gDNA_intron_boundary i_start="130613" i_stop="130701" i_length="89"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="130702" e_stop="130821" e_length="120"/>
          </exon>
          <intron i_serial="7" don_prob="0.879" acc_prob="0.890">
            <gDNA_intron_boundary i_start="130822" i_stop="131646" i_length="825"/>
          </intron>
          <exon e_serial="8" e_score="0.980">
            <gDNA_exon_boundary e_start="131647" e_stop="132047" e_length="401"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126807" stop="126943"/>
              <exon start="127014" stop="127130"/>
              <exon start="128018" stop="128175"/>
              <exon start="128540" stop="128642"/>
              <exon start="129834" stop="129929"/>
              <exon start="130547" stop="130612"/>
              <exon start="130702" stop="130730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441739" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126807" stop="126943"/>
              <exon start="127014" stop="127130"/>
              <exon start="128018" stop="128175"/>
              <exon start="128540" stop="128601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126808" stop="126943"/>
              <exon start="127014" stop="127130"/>
              <exon start="128018" stop="128175"/>
              <exon start="128540" stop="128642"/>
              <exon start="129834" stop="129929"/>
              <exon start="130547" stop="130612"/>
              <exon start="130702" stop="130821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130553" stop="130612"/>
              <exon start="130702" stop="130821"/>
              <exon start="131647" stop="131844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130717" stop="130821"/>
              <exon start="131647" stop="131844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130804" stop="130821"/>
              <exon start="131647" stop="131842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131647" stop="132047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349058" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAGGAAGAAGATGAAGAGCAAAGGTAGATTAGTGGGACAAAGATGGCGGAGCATAGGGGGCTTACCTTCAATATTTCTGCTATGTCTTTTCTTGTTCTTCGCCGGTTTATTCGGTTCTACTCTCGTTTCTCATCAG : GATGTACAACTACTTACTGTACGGCCTAGGTCAAGGGTGCTTAAATCTGTGGAAGAATTTGATGTTTTGCCTAATGGCGACACTGGAGAACACTCCCTTACTTCCATCCCCTTCCAG : GTCTTAAGCTGGTTCCCACGTGCATTATACTTTCCCAATTTCGCAACTACAGAACAATGCCAAGGCATAATTAAGATGGCAAAGGCAGAACTGAAACCATCATCTTTGGCTCTCCGCAAAGGAGAAACAGCAGAAAATACCAAAGGAGTTAGAACAAG : TTCTGGTATGTTTATCAGTGCATCTGAAGACAAAACTGGAATTCTGGACCTCATTGAGGAGAAAATCGCAAAGGCGACTATGATCCCCAGGACACACGGAGAG : GCATTTAATGTTTTGCGGTACGAAATAGGCCAGAGTTATTATTCACATTATGATGCGTTTGATCCTTCTCAATATGGTCCTCAGAAGAGCCAAAGG : GTTGCATCCTTTTTGTTATATTTATCTGATGTGGAAGAAGGTGGAGAAACCATGTTCCCTTTCGAG : AATGCACAGAATATGGATGTTAATTATGACTTCCGCAAGTGTATTGGTCTGAAAGTGAAGCCGCGTAGAGGGGATGGACTACTATTTTACTCGCTGTTTCCAAATGGTACAATTGATCCG : ACATCTCTTCACGGGAGCTGTGCAGTAATCCGAGGTGAAAAATGGGTTGCCACAAAGTGGATCAGGGATCAAGAAATGGATGAATAAACGAGTACATGTCTGGAAGTGGTGTTAATATAATTCTTTCGTAATTTAATGTAGCCACTCACTGGAACCTTTGAGCGAATTTTACAGTAAATATATCTAGTGTTTGTTCATATTGATCTGTGTCAGTTAACCCTTAATACGTTACTTGAGTCTTGGTTGCTCCCATTACCCACAAAGCTCACCCCATCTTGCAGTAAAAAAGAAGTCTAATTGTAATGACCGTGCGAATGTTTTGTAATAGGATCAGATCACGTGTTTCAAAAGTGTTGTACTAACACAAATATTATTATGACGCTAAAAAGAATGTGTATAGA</gDNA_template>
            <first_frame> S  G  R  R  *  R  A  K  V  D  *  W  D  K  D  G  G  A  *  G  A  Y  L  Q  Y  F  C  Y  V  F  S  C  S  S  P  V  Y  S  V  L  L  S  F  L  I  R :   M  Y  N  Y  L  L  Y  G  L  G  Q  G  C  L  N  L  W  K  N  L  M  F  C  L  M  A  T  L  E  N  T  P  L  L  P  S  P  S  R :   S  *  A  G  S  H  V  H  Y  T  F  P  I  S  Q  L  Q  N  N  A  K  A  *  L  R  W  Q  R  Q  N  *  N  H  H  L  W  L  S  A  K  E  K  Q  Q  K  I  P  K  E  L  E  Q   : V  L  V  C  L  S  V  H  L  K  T  K  L  E  F  W  T  S  L  R  R  K  S  Q  R  R  L  *  S  P  G  H  T  E  R :   H  L  M  F  C  G  T  K  *  A  R  V  I  I  H  I  M  M  R  L  I  L  L  N  M  V  L  R  R  A  K  G :   L  H  P  F  C  Y  I  Y  L  M  W  K  K  V  E  K  P  C  S  L  S  R :   M  H  R  I  W  M  L  I  M  T  S  A  S  V  L  V  *  K  *  S  R  V  E  G  M  D  Y  Y  F  T  R  C  F  Q  M  V  Q  L  I  R :   H  L  F  T  G  A  V  Q  *  S  E  V  K  N  G  L  P  Q  S  G  S  G  I  K  K  W  M  N  K  R  V  H  V  W  K  W  C  *  Y  N  S  F  V  I  *  C  S  H  S  L  E  P  L  S  E  F  Y  S  K  Y  I  *  C  L  F  I  L  I  C  V  S  *  P  L  I  R  Y  L  S  L  G  C  S  H  Y  P  Q  S  S  P  H  L  A  V  K  K  K  S  N  C  N  D  R  A  N  V  L  *  *  D  Q  I  T  C  F  K  S  V  V  L  T  Q  I  L  L  *  R  *  K  E  C  V  *  </first_frame>
            <second_frame>  Q  E  E  D  E  E  Q  R  *  I  S  G  T  K  M  A  E  H  R  G  L  T  F  N  I  S  A  M  S  F  L  V  L  R  R  F  I  R  F  Y  S  R  F  S  S   : G  C  T  T  T  Y  C  T  A  *  V  K  G  A  *  I  C  G  R  I  *  C  F  A  *  W  R  H  W  R  T  L  P  Y  F  H  P  L  P   : G  L  K  L  V  P  T  C  I  I  L  S  Q  F  R  N  Y  R  T  M  P  R  H  N  *  D  G  K  G  R  T  E  T  I  I  F  G  S  P  Q  R  R  N  S  R  K  Y  Q  R  S  *  N  K  :  F  W  Y  V  Y  Q  C  I  *  R  Q  N  W  N  S  G  P  H  *  G  E  N  R  K  G  D  Y  D  P  Q  D  T  R  R   : G  I  *  C  F  A  V  R  N  R  P  E  L  L  F  T  L  *  C  V  *  S  F  S  I  W  S  S  E  E  P  K   : G  C  I  L  F  V  I  F  I  *  C  G  R  R  W  R  N  H  V  P  F  R   : E  C  T  E  Y  G  C  *  L  *  L  P  Q  V  Y  W  S  E  S  E  A  A  *  R  G  W  T  T  I  L  L  A  V  S  K  W  Y  N  *  S   : D  I  S  S  R  E  L  C  S  N  P  R  *  K  M  G  C  H  K  V  D  Q  G  S  R  N  G  *  I  N  E  Y  M  S  G  S  G  V  N  I  I  L  S  *  F  N  V  A  T  H  W  N  L  *  A  N  F  T  V  N  I  S  S  V  C  S  Y  *  S  V  S  V  N  P  *  Y  V  T  *  V  L  V  A  P  I  T  H  K  A  H  P  I  L  Q  *  K  R  S  L  I  V  M  T  V  R  M  F  C  N  R  I  R  S  R  V  S  K  V  L  Y  *  H  K  Y  Y  Y  D  A  K  K  N  V  Y  R </second_frame>
            <third_frame>   R  K  K  M  K  S  K  G  R  L  V  G  Q  R  W  R  S  I  G  G  L  P  S  I  F  L  L  C  L  F  L  F  F  A  G  L  F  G  S  T  L  V  S  H  Q  :  D  V  Q  L  L  T  V  R  P  R  S  R  V  L  K  S  V  E  E  F  D  V  L  P  N  G  D  T  G  E  H  S  L  T  S  I  P  F  Q  :  V  L  S  W  F  P  R  A  L  Y  F  P  N  F  A  T  T  E  Q  C  Q  G  I  I  K  M  A  K  A  E  L  K  P  S  S  L  A  L  R  K  G  E  T  A  E  N  T  K  G  V  R  T  S :   S  G  M  F  I  S  A  S  E  D  K  T  G  I  L  D  L  I  E  E  K  I  A  K  A  T  M  I  P  R  T  H  G  E  :  A  F  N  V  L  R  Y  E  I  G  Q  S  Y  Y  S  H  Y  D  A  F  D  P  S  Q  Y  G  P  Q  K  S  Q  R  :  V  A  S  F  L  L  Y  L  S  D  V  E  E  G  G  E  T  M  F  P  F  E  :  N  A  Q  N  M  D  V  N  Y  D  F  R  K  C  I  G  L  K  V  K  P  R  R  G  D  G  L  L  F  Y  S  L  F  P  N  G  T  I  D  P  :  T  S  L  H  G  S  C  A  V  I  R  G  E  K  W  V  A  T  K  W  I  R  D  Q  E  M  D  E  *  T  S  T  C  L  E  V  V  L  I  *  F  F  R  N  L  M  *  P  L  T  G  T  F  E  R  I  L  Q  *  I  Y  L  V  F  V  H  I  D  L  C  Q  L  T  L  N  T  L  L  E  S  W  L  L  P  L  P  T  K  L  T  P  S  C  S  K  K  E  V  *  L  *  *  P  C  E  C  F  V  I  G  S  D  H  V  F  Q  K  C  C  T  N  T  N  I  I  M  T  L  K  R  M  C  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0053H21.1" strand="+"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="126809" stop="126943"/>
                    <exon start="127014" stop="127130"/>
                    <exon start="128018" stop="128175"/>
                    <exon start="128540" stop="128642"/>
                    <exon start="129834" stop="129929"/>
                    <exon start="130547" stop="130612"/>
                    <exon start="130702" stop="130821"/>
                    <exon start="131647" stop="131733"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>879</number_coding_nucleotides>
                  <number_encoded_amino_acids>293</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKKMKSKGRLVGQRWRSIGGLPSIFLLCLFLFFAGLFGSTLVSHQDVQLLTVRPRSRVLKSVEEFDVLPNGDTGEHSLTSIPFQVLSWFPRALYFPNFATTEQCQGIIKMAKAELKPSSLALRKGETAENTKGVRTSSGMFISASEDKTGILDLIEEKIAKATMIPRTHGEAFNVLRYEIGQSYYSHYDAFDPSQYGPQKSQRVASFLLYLSDVEEGGETMFPFENAQNMDVNYDFRKCIGLKVKPRRGDGLLFYSLFPNGTIDPTSLHGSCAVIRGEKWVATKWIRDQEMDE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="129818" e_stop="129929"/>
            <exon e_start="130547" e_stop="130612"/>
            <exon e_start="130702" e_stop="130821"/>
            <exon e_start="131647" e_stop="132047"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.383" e_score="0.964"/>
          <exon-intron don_prob="0.998" acc_prob="0.942" e_score="0.983"/>
          <exon-intron don_prob="0.879" acc_prob="0.890" e_score="1.000"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.964">
            <gDNA_exon_boundary e_start="129818" e_stop="129929" e_length="112"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.383">
            <gDNA_intron_boundary i_start="129930" i_stop="130546" i_length="617"/>
          </intron>
          <exon e_serial="2" e_score="0.983">
            <gDNA_exon_boundary e_start="130547" e_stop="130612" e_length="66"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.942">
            <gDNA_intron_boundary i_start="130613" i_stop="130701" i_length="89"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="130702" e_stop="130821" e_length="120"/>
          </exon>
          <intron i_serial="3" don_prob="0.879" acc_prob="0.890">
            <gDNA_intron_boundary i_start="130822" i_stop="131646" i_length="825"/>
          </intron>
          <exon e_serial="4" e_score="0.980">
            <gDNA_exon_boundary e_start="131647" e_stop="132047" e_length="401"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129818" stop="129929"/>
              <exon start="130547" stop="130612"/>
              <exon start="130702" stop="130821"/>
              <exon start="131647" stop="131850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597678" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130553" stop="130612"/>
              <exon start="130702" stop="130821"/>
              <exon start="131647" stop="131844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130717" stop="130821"/>
              <exon start="131647" stop="131844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130804" stop="130821"/>
              <exon start="131647" stop="131842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131647" stop="132047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349058" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTGTGCGTTTTTCAGGCATTTAATGTTTTGCGGTACGAAATAGGCCAGAGTTATTATTCACATTATGATGCGTTTGATCCTTCTCAATATGGTCCTCAGAAGAGCCAAAGG : GTTGCATCCTTTTTGTTATATTTATCTGATGTGGAAGAAGGTGGAGAAACCATGTTCCCTTTCGAG : AATGCACAGAATATGGATGTTAATTATGACTTCCGCAAGTGTATTGGTCTGAAAGTGAAGCCGCGTAGAGGGGATGGACTACTATTTTACTCGCTGTTTCCAAATGGTACAATTGATCCG : ACATCTCTTCACGGGAGCTGTGCAGTAATCCGAGGTGAAAAATGGGTTGCCACAAAGTGGATCAGGGATCAAGAAATGGATGAATAAACGAGTACATGTCTGGAAGTGGTGTTAATATAATTCTTTCGTAATTTAATGTAGCCACTCACTGGAACCTTTGAGCGAATTTTACAGTAAATATATCTAGTGTTTGTTCATATTGATCTGTGTCAGTTAACCCTTAATACGTTACTTGAGTCTTGGTTGCTCCCATTACCCACAAAGCTCACCCCATCTTGCAGTAAAAAAGAAGTCTAATTGTAATGACCGTGCGAATGTTTTGTAATAGGATCAGATCACGTGTTTCAAAAGTGTTGTACTAACACAAATATTATTATGACGCTAAAAAGAATGTGTATAGA</gDNA_template>
            <first_frame> P  V  R  F  S  G  I  *  C  F  A  V  R  N  R  P  E  L  L  F  T  L  *  C  V  *  S  F  S  I  W  S  S  E  E  P  K   : G  C  I  L  F  V  I  F  I  *  C  G  R  R  W  R  N  H  V  P  F  R   : E  C  T  E  Y  G  C  *  L  *  L  P  Q  V  Y  W  S  E  S  E  A  A  *  R  G  W  T  T  I  L  L  A  V  S  K  W  Y  N  *  S   : D  I  S  S  R  E  L  C  S  N  P  R  *  K  M  G  C  H  K  V  D  Q  G  S  R  N  G  *  I  N  E  Y  M  S  G  S  G  V  N  I  I  L  S  *  F  N  V  A  T  H  W  N  L  *  A  N  F  T  V  N  I  S  S  V  C  S  Y  *  S  V  S  V  N  P  *  Y  V  T  *  V  L  V  A  P  I  T  H  K  A  H  P  I  L  Q  *  K  R  S  L  I  V  M  T  V  R  M  F  C  N  R  I  R  S  R  V  S  K  V  L  Y  *  H  K  Y  Y  Y  D  A  K  K  N  V  Y  R </first_frame>
            <second_frame>  L  C  V  F  Q  A  F  N  V  L  R  Y  E  I  G  Q  S  Y  Y  S  H  Y  D  A  F  D  P  S  Q  Y  G  P  Q  K  S  Q  R  :  V  A  S  F  L  L  Y  L  S  D  V  E  E  G  G  E  T  M  F  P  F  E  :  N  A  Q  N  M  D  V  N  Y  D  F  R  K  C  I  G  L  K  V  K  P  R  R  G  D  G  L  L  F  Y  S  L  F  P  N  G  T  I  D  P  :  T  S  L  H  G  S  C  A  V  I  R  G  E  K  W  V  A  T  K  W  I  R  D  Q  E  M  D  E  *  T  S  T  C  L  E  V  V  L  I  *  F  F  R  N  L  M  *  P  L  T  G  T  F  E  R  I  L  Q  *  I  Y  L  V  F  V  H  I  D  L  C  Q  L  T  L  N  T  L  L  E  S  W  L  L  P  L  P  T  K  L  T  P  S  C  S  K  K  E  V  *  L  *  *  P  C  E  C  F  V  I  G  S  D  H  V  F  Q  K  C  C  T  N  T  N  I  I  M  T  L  K  R  M  C  I   </second_frame>
            <third_frame>   C  A  F  F  R  H  L  M  F  C  G  T  K  *  A  R  V  I  I  H  I  M  M  R  L  I  L  L  N  M  V  L  R  R  A  K  G :   L  H  P  F  C  Y  I  Y  L  M  W  K  K  V  E  K  P  C  S  L  S  R :   M  H  R  I  W  M  L  I  M  T  S  A  S  V  L  V  *  K  *  S  R  V  E  G  M  D  Y  Y  F  T  R  C  F  Q  M  V  Q  L  I  R :   H  L  F  T  G  A  V  Q  *  S  E  V  K  N  G  L  P  Q  S  G  S  G  I  K  K  W  M  N  K  R  V  H  V  W  K  W  C  *  Y  N  S  F  V  I  *  C  S  H  S  L  E  P  L  S  E  F  Y  S  K  Y  I  *  C  L  F  I  L  I  C  V  S  *  P  L  I  R  Y  L  S  L  G  C  S  H  Y  P  Q  S  S  P  H  L  A  V  K  K  K  S  N  C  N  D  R  A  N  V  L  *  *  D  Q  I  T  C  F  K  S  V  V  L  T  Q  I  L  L  *  R  *  K  E  C  V  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0053H21.1" strand="+"/>
                <serials PGL_serial="24" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="129819" stop="129929"/>
                    <exon start="130547" stop="130612"/>
                    <exon start="130702" stop="130821"/>
                    <exon start="131647" stop="131733"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>381</number_coding_nucleotides>
                  <number_encoded_amino_acids>127</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LCVFQAFNVLRYEIGQSYYSHYDAFDPSQYGPQKSQRVASFLLYLSDVEEGGETMFPFENAQNMDVNYDFRKCIGLKVKPRRGDGLLFYSLFPNGTIDPTSLHGSCAVIRGEKWVATKWIRDQEMDE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="126794" e_stop="126943"/>
            <exon e_start="127014" e_stop="127130"/>
            <exon e_start="128018" e_stop="128175"/>
            <exon e_start="128540" e_stop="128642"/>
            <exon e_start="129398" e_stop="129428"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.983" acc_prob="0.637" e_score="0.942"/>
          <exon-intron don_prob="0.998" acc_prob="0.949" e_score="0.957"/>
          <exon-intron don_prob="0.997" acc_prob="0.967" e_score="0.968"/>
          <exon-intron don_prob="0.952" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.968"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.942">
            <gDNA_exon_boundary e_start="126794" e_stop="126943" e_length="150"/>
          </exon>
          <intron i_serial="1" don_prob="0.983" acc_prob="0.637">
            <gDNA_intron_boundary i_start="126944" i_stop="127013" i_length="70"/>
          </intron>
          <exon e_serial="2" e_score="0.957">
            <gDNA_exon_boundary e_start="127014" e_stop="127130" e_length="117"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.949">
            <gDNA_intron_boundary i_start="127131" i_stop="128017" i_length="887"/>
          </intron>
          <exon e_serial="3" e_score="0.968">
            <gDNA_exon_boundary e_start="128018" e_stop="128175" e_length="158"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.967">
            <gDNA_intron_boundary i_start="128176" i_stop="128539" i_length="364"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="128540" e_stop="128642" e_length="103"/>
          </exon>
          <intron i_serial="4" don_prob="0.952" acc_prob="0.000">
            <gDNA_intron_boundary i_start="128643" i_stop="129397" i_length="755"/>
          </intron>
          <exon e_serial="5" e_score="0.968">
            <gDNA_exon_boundary e_start="129398" e_stop="129428" e_length="31"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126794" stop="126943"/>
              <exon start="127014" stop="127130"/>
              <exon start="128018" stop="128175"/>
              <exon start="128540" stop="128642"/>
              <exon start="129398" stop="129428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126807" stop="126943"/>
              <exon start="127014" stop="127130"/>
              <exon start="128018" stop="128175"/>
              <exon start="128540" stop="128601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441740" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCGGATTCGCCATCAGGAAGAAGATGAAGAGCAAAGGTAGATTAGTGGGACAAAGATGGCGGAGCATAGGGGGCTTACCTTCAATATTTCTGCTATGTCTTTTCTTGTTCTTCGCCGGTTTATTCGGTTCTACTCTCGTTTCTCATCAG : GATGTACAACTACTTACTGTACGGCCTAGGTCAAGGGTGCTTAAATCTGTGGAAGAATTTGATGTTTTGCCTAATGGCGACACTGGAGAACACTCCCTTACTTCCATCCCCTTCCAG : GTCTTAAGCTGGTTCCCACGTGCATTATACTTTCCCAATTTCGCAACTACAGAACAATGCCAAGGCATAATTAAGATGGCAAAGGCAGAACTGAAACCATCATCTTTGGCTCTCCGCAAAGGAGAAACAGCAGAAAATACCAAAGGAGTTAGAACAAG : TTCTGGTATGTTTATCAGTGCATCTGAAGACAAAACTGGAATTCTGGACCTCATTGAGGAGAAAATCGCAAAGGCGACTATGATCCCCAGGACACACGGAGAG : CTGTCACATGGTCTAGTCTGTATGTATTCTA</gDNA_template>
            <first_frame> I  G  F  A  I  R  K  K  M  K  S  K  G  R  L  V  G  Q  R  W  R  S  I  G  G  L  P  S  I  F  L  L  C  L  F  L  F  F  A  G  L  F  G  S  T  L  V  S  H  Q  :  D  V  Q  L  L  T  V  R  P  R  S  R  V  L  K  S  V  E  E  F  D  V  L  P  N  G  D  T  G  E  H  S  L  T  S  I  P  F  Q  :  V  L  S  W  F  P  R  A  L  Y  F  P  N  F  A  T  T  E  Q  C  Q  G  I  I  K  M  A  K  A  E  L  K  P  S  S  L  A  L  R  K  G  E  T  A  E  N  T  K  G  V  R  T  S :   S  G  M  F  I  S  A  S  E  D  K  T  G  I  L  D  L  I  E  E  K  I  A  K  A  T  M  I  P  R  T  H  G  E  :  L  S  H  G  L  V  C  M  Y  S  </first_frame>
            <second_frame>  S  D  S  P  S  G  R  R  *  R  A  K  V  D  *  W  D  K  D  G  G  A  *  G  A  Y  L  Q  Y  F  C  Y  V  F  S  C  S  S  P  V  Y  S  V  L  L  S  F  L  I  R :   M  Y  N  Y  L  L  Y  G  L  G  Q  G  C  L  N  L  W  K  N  L  M  F  C  L  M  A  T  L  E  N  T  P  L  L  P  S  P  S  R :   S  *  A  G  S  H  V  H  Y  T  F  P  I  S  Q  L  Q  N  N  A  K  A  *  L  R  W  Q  R  Q  N  *  N  H  H  L  W  L  S  A  K  E  K  Q  Q  K  I  P  K  E  L  E  Q   : V  L  V  C  L  S  V  H  L  K  T  K  L  E  F  W  T  S  L  R  R  K  S  Q  R  R  L  *  S  P  G  H  T  E  S :   C  H  M  V  *  S  V  C  I  L </second_frame>
            <third_frame>   R  I  R  H  Q  E  E  D  E  E  Q  R  *  I  S  G  T  K  M  A  E  H  R  G  L  T  F  N  I  S  A  M  S  F  L  V  L  R  R  F  I  R  F  Y  S  R  F  S  S   : G  C  T  T  T  Y  C  T  A  *  V  K  G  A  *  I  C  G  R  I  *  C  F  A  *  W  R  H  W  R  T  L  P  Y  F  H  P  L  P   : G  L  K  L  V  P  T  C  I  I  L  S  Q  F  R  N  Y  R  T  M  P  R  H  N  *  D  G  K  G  R  T  E  T  I  I  F  G  S  P  Q  R  R  N  S  R  K  Y  Q  R  S  *  N  K  :  F  W  Y  V  Y  Q  C  I  *  R  Q  N  W  N  S  G  P  H  *  G  E  N  R  K  G  D  Y  D  P  Q  D  T  R  R   : A  V  T  W  S  S  L  Y  V  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0053H21.1" strand="+"/>
                <serials PGL_serial="24" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="126794" stop="126943"/>
                    <exon start="127014" stop="127130"/>
                    <exon start="128018" stop="128175"/>
                    <exon start="128540" stop="128642"/>
                    <exon start="129398" stop="129427"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>558</number_coding_nucleotides>
                  <number_encoded_amino_acids>186</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IGFAIRKKMKSKGRLVGQRWRSIGGLPSIFLLCLFLFFAGLFGSTLVSHQDVQLLTVRPRSRVLKSVEEFDVLPNGDTGEHSLTSIPFQVLSWFPRALYFPNFATTEQCQGIIKMAKAELKPSSLALRKGETAENTKGVRTSSGMFISASEDKTGILDLIEEKIAKATMIPRTHGELSHGLVCMYS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="25" PGL_strand="+" PGL_start="132360" PGL_stop="132859"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="132360" e_stop="132859"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="132360" e_stop="132859" e_length="500"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132360" stop="132859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714981" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="25" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAATATTAATATAACAGAGAGGAGAAAGAAAAGAAATGGAAAAGCAAAGAGATAGTAATAAGGGATGTATAGATGAGAGAAAACTAGAAGGATTGCCAGTGGATACAAGTCCATATACACAGTATAAGGATTTGGAGGATTACAAGCAACAGGGTTATGGAACACAAGGCCATCAACAGCCCAATCCTGGGCGTGGTGCTGCCAGTTCCACCGACGCCCCAACCCTCGCAGGTGGTGGATCTGCTGAAGCTCAGCTTTCTGCTACTGACAACATCAATCGCCAGGGTGTTCCTTAATTAATTTCGTTAATTTTTAGTCGCATTTACAACAGTTATTCCTTTTTTTTACTTGGGTAAAATACGTATATGTAGAATAATAACAATAAGAACGTTCTGAATTAGTGATTCTAGATCTTAGATTCGTCCCTGTTTGGTGTTGTTTGTATGTTCCTTCCGTCGGCTTGTAACTTAATAAATATATTTTTCTAAAAATAAGTACTA</gDNA_template>
            <first_frame> *  Y  *  Y  N  R  E  E  K  E  K  K  W  K  S  K  E  I  V  I  R  D  V  *  M  R  E  N  *  K  D  C  Q  W  I  Q  V  H  I  H  S  I  R  I  W  R  I  T  S  N  R  V  M  E  H  K  A  I  N  S  P  I  L  G  V  V  L  P  V  P  P  T  P  Q  P  S  Q  V  V  D  L  L  K  L  S  F  L  L  L  T  T  S  I  A  R  V  F  L  N  *  F  R  *  F  L  V  A  F  T  T  V  I  P  F  F  Y  L  G  K  I  R  I  C  R  I  I  T  I  R  T  F  *  I  S  D  S  R  S  *  I  R  P  C  L  V  L  F  V  C  S  F  R  R  L  V  T  *  *  I  Y  F  S  K  N  K  Y   </first_frame>
            <second_frame>  N  I  N  I  T  E  R  R  K  K  R  N  G  K  A  K  R  *  *  *  G  M  Y  R  *  E  K  T  R  R  I  A  S  G  Y  K  S  I  Y  T  V  *  G  F  G  G  L  Q  A  T  G  L  W  N  T  R  P  S  T  A  Q  S  W  A  W  C  C  Q  F  H  R  R  P  N  P  R  R  W  W  I  C  *  S  S  A  F  C  Y  *  Q  H  Q  S  P  G  C  S  L  I  N  F  V  N  F  *  S  H  L  Q  Q  L  F  L  F  F  T  W  V  K  Y  V  Y  V  E  *  *  Q  *  E  R  S  E  L  V  I  L  D  L  R  F  V  P  V  W  C  C  L  Y  V  P  S  V  G  L  *  L  N  K  Y  I  F  L  K  I  S  T  </second_frame>
            <third_frame>   I  L  I  *  Q  R  G  E  R  K  E  M  E  K  Q  R  D  S  N  K  G  C  I  D  E  R  K  L  E  G  L  P  V  D  T  S  P  Y  T  Q  Y  K  D  L  E  D  Y  K  Q  Q  G  Y  G  T  Q  G  H  Q  Q  P  N  P  G  R  G  A  A  S  S  T  D  A  P  T  L  A  G  G  G  S  A  E  A  Q  L  S  A  T  D  N  I  N  R  Q  G  V  P  *  L  I  S  L  I  F  S  R  I  Y  N  S  Y  S  F  F  L  L  G  *  N  T  Y  M  *  N  N  N  N  K  N  V  L  N  *  *  F  *  I  L  D  S  S  L  F  G  V  V  C  M  F  L  P  S  A  C  N  L  I  N  I  F  F  *  K  *  V  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0053H21.1" strand="+"/>
                <serials PGL_serial="25" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="132374" stop="132655"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QRGERKEMEKQRDSNKGCIDERKLEGLPVDTSPYTQYKDLEDYKQQGYGTQGHQQPNPGRGAASSTDAPTLAGGGSAEAQLSATDNINRQGVP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0053H21.1" strand="+"/>
                <serials PGL_serial="25" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="132447" stop="132659"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KDCQWIQVHIHSIRIWRITSNRVMEHKAINSPILGVVLPVPPTPQPSQVVDLLKLSFLLLTTSIARVFLN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="26" PGL_strand="-" PGL_start="132703" PGL_stop="132363"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="132703" e_stop="132363"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="132703" e_stop="132363" e_length="341"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132703" stop="132378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132698" stop="132363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280790" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="26" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAAAGGAATAACTGTTGTAAATGCGACTAAAAATTAACGAAATTAATTAAGGAACACCCTGGCGATTGATGTTGTCAGTAGCAGAAAGCTGAGCTTCAGCAGATCCACCACCTGCGAGGGTTGGGGCGTCGGTGGAACTGGCAGCACCACGCCCAGGATTGGGCTGTTGATGGCCTTGTGTTCCATAACCCTGTTGCTTGTAATCCTCCAAATCCTTATACTGTGTATATGGACTTGTATCCACTGGCAATCCTTCTAGTTTTCTCTCATCTATACATCCCTTATTACTATCTCTTTGCTTTTCCATTTCTTTTCTTTCTCCTCTCTGTTATATTAATA</gDNA_template>
            <first_frame> K  K  G  I  T  V  V  N  A  T  K  N  *  R  N  *  L  R  N  T  L  A  I  D  V  V  S  S  R  K  L  S  F  S  R  S  T  T  C  E  G  W  G  V  G  G  T  G  S  T  T  P  R  I  G  L  L  M  A  L  C  S  I  T  L  L  L  V  I  L  Q  I  L  I  L  C  I  W  T  C  I  H  W  Q  S  F  *  F  S  L  I  Y  T  S  L  I  T  I  S  L  L  F  H  F  F  S  F  S  S  L  L  Y  *   </first_frame>
            <second_frame>  K  K  E  *  L  L  *  M  R  L  K  I  N  E  I  N  *  G  T  P  W  R  L  M  L  S  V  A  E  S  *  A  S  A  D  P  P  P  A  R  V  G  A  S  V  E  L  A  A  P  R  P  G  L  G  C  *  W  P  C  V  P  *  P  C  C  L  *  S  S  K  S  L  Y  C  V  Y  G  L  V  S  T  G  N  P  S  S  F  L  S  S  I  H  P  L  L  L  S  L  C  F  S  I  S  F  L  S  P  L  C  Y  I  N  </second_frame>
            <third_frame>   K  R  N  N  C  C  K  C  D  *  K  L  T  K  L  I  K  E  H  P  G  D  *  C  C  Q  *  Q  K  A  E  L  Q  Q  I  H  H  L  R  G  L  G  R  R  W  N  W  Q  H  H  A  Q  D  W  A  V  D  G  L  V  F  H  N  P  V  A  C  N  P  P  N  P  Y  T  V  Y  M  D  L  Y  P  L  A  I  L  L  V  F  S  H  L  Y  I  P  Y  Y  Y  L  F  A  F  P  F  L  F  F  L  L  S  V  I  L  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0053H21.1" strand="-"/>
                <serials PGL_serial="26" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="132620" stop="132363"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QKAELQQIHHLRGLGRRWNWQHHAQDWAVDGLVFHNPVACNPPNPYTVYMDLYPLAILLVFSHLYIPYYYLFAFPFLFFLLSVILI</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0053H21.1" strand="-"/>
                <serials PGL_serial="26" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="132655" stop="132443"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRNTLAIDVVSSRKLSFSRSTTCEGWGVGGTGSTTPRIGLLMALCSITLLLVILQILILCIWTCIHWQSF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="27" PGL_strand="+" PGL_start="135861" PGL_stop="137274"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="135861" e_stop="137274"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="135861" e_stop="137274" e_length="1414"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135861" stop="136592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135861" stop="136368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136028" stop="136702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402607" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136052" stop="136482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324153" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136061" stop="136658"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136061" stop="136464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333441" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136087" stop="136653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471145" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136620" stop="137274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371081" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136723" stop="137274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280332" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="27" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTATAATATAATCTATATAAATTAATACCATTCAAATGCATGCATTGTTAAATTAAAGTAGTCCCCACCATCTTCACTCTTCCCAAGTAGTAACAGAGAAGCCCAACTTTATTTTTCTCCGTAATAATCATTTGAAAGGCTTAAAAAAGCTCCACGCTGCTAAAAAAAAAGCCGGCTTTATTTGCGCCCCAATAGTATTCTTGACTTACAAACAAGGAACGAACAATTTTCTATTGTCGCCTGCAAGCTTATTCCTACATCCCATTTGTCTCCCTCTTTATATAACTGTTCCTCTTTTTTAACTATATTATTCTATATCGACCTCGATCAACAAGAACAAGAGCAAGAAAAAATGATGAAAATTACTAGGGAAAGCGAAGAAATTGTTCTCCTCGAAGAACAATACGATGAATTAGAAGACGAATATGATGAAGAAGCATTATCACTGTGTGATCTTCCGAACAATGAAGAGGACGAAAAGAAGGAAGAAGTTTCTAGAAGTACTAGCGTAGAAGGCGGACAATTAGAAGATTTTGATTTTAGCTCTTCTGGTGGTAATTTGTTGAAAGAATCAGAGATGTGTACGGCAGATGAAATTTTCTACAAAGGCCAAATATTACCGTTGCGTCATTCAATTAGTTTGCCAAGTGATCGGCGCAATTGTCATGATACAAATTCAAGCAGTAGAAGTAGCAGTATTCGAAGCCAACGTTCATCTAGCAGTGGCAGTTCATCTAATTTCAACACGAAATATCAGCCTAAAATTCGAAATCAATTTCATTCTCATCCTAGTCCAACACCTCAGGTTCGATTTTCTAAAGTTAGTTTTCAATCAAATGTCAACAATTCCACACGAAAATCAGCATTGTGGAGTCTATTTCGCGTTGGCCTAGTTACACCACCAGAAATTGCATTACAAGATCTGAAAAACAGAGGAAACAGGGATATTTCAGGAAGTCGAAATAGCACGAGCAGTAGTAGCAGCGGGAGCTTCGGCAATAATGATAATAAGATGAGAATTAAGAAAACGAAACAGAGGTTTTCTCTAGGCAGCTGTAAATGTTCAGCAAATGTGGTAGAAACAGTTCCAATCGTGAACAGTAGAAGTACAATTAAGAAAATAAGAAAAGCCACAGGGGACCATGAACATGAAGATAAGAAGGATTCATCAGAGAATATCAAATCGACAAAAAAGCAAGCAATGTCACGTCATCGAACGTTTGAGTGGTTAAAGCAACTTTCACTAGAAGGTCCATCAGATGAAACATAAAGATTTCAAAGTATCACGCATGCTTAGCTTCTTTTTTTTCTTCTTTTTTTCATGTAATGTAATGTAACTTTTTTTTTTTTTTGAGTAGTGGAATCATGAAGTTGATTAATTGAAGTAATTGAGGACGCAATTATAATGGTAGC</gDNA_template>
            <first_frame> F  I  I  *  S  I  *  I  N  T  I  Q  M  H  A  L  L  N  *  S  S  P  H  H  L  H  S  S  Q  V  V  T  E  K  P  N  F  I  F  L  R  N  N  H  L  K  G  L  K  K  L  H  A  A  K  K  K  A  G  F  I  C  A  P  I  V  F  L  T  Y  K  Q  G  T  N  N  F  L  L  S  P  A  S  L  F  L  H  P  I  C  L  P  L  Y  I  T  V  P  L  F  *  L  Y  Y  S  I  S  T  S  I  N  K  N  K  S  K  K  K  *  *  K  L  L  G  K  A  K  K  L  F  S  S  K  N  N  T  M  N  *  K  T  N  M  M  K  K  H  Y  H  C  V  I  F  R  T  M  K  R  T  K  R  R  K  K  F  L  E  V  L  A  *  K  A  D  N  *  K  I  L  I  L  A  L  L  V  V  I  C  *  K  N  Q  R  C  V  R  Q  M  K  F  S  T  K  A  K  Y  Y  R  C  V  I  Q  L  V  C  Q  V  I  G  A  I  V  M  I  Q  I  Q  A  V  E  V  A  V  F  E  A  N  V  H  L  A  V  A  V  H  L  I  S  T  R  N  I  S  L  K  F  E  I  N  F  I  L  I  L  V  Q  H  L  R  F  D  F  L  K  L  V  F  N  Q  M  S  T  I  P  H  E  N  Q  H  C  G  V  Y  F  A  L  A  *  L  H  H  Q  K  L  H  Y  K  I  *  K  T  E  E  T  G  I  F  Q  E  V  E  I  A  R  A  V  V  A  A  G  A  S  A  I  M  I  I  R  *  E  L  R  K  R  N  R  G  F  L  *  A  A  V  N  V  Q  Q  M  W  *  K  Q  F  Q  S  *  T  V  E  V  Q  L  R  K  *  E  K  P  Q  G  T  M  N  M  K  I  R  R  I  H  Q  R  I  S  N  R  Q  K  S  K  Q  C  H  V  I  E  R  L  S  G  *  S  N  F  H  *  K  V  H  Q  M  K  H  K  D  F  K  V  S  R  M  L  S  F  F  F  F  F  F  F  S  C  N  V  M  *  L  F  F  F  F  E  *  W  N  H  E  V  D  *  L  K  *  L  R  T  Q  L  *  W  *  </first_frame>
            <second_frame>  L  *  Y  N  L  Y  K  L  I  P  F  K  C  M  H  C  *  I  K  V  V  P  T  I  F  T  L  P  K  *  *  Q  R  S  P  T  L  F  F  S  V  I  I  I  *  K  A  *  K  S  S  T  L  L  K  K  K  P  A  L  F  A  P  Q  *  Y  S  *  L  T  N  K  E  R  T  I  F  Y  C  R  L  Q  A  Y  S  Y  I  P  F  V  S  L  F  I  *  L  F  L  F  F  N  Y  I  I  L  Y  R  P  R  S  T  R  T  R  A  R  K  N  D  E  N  Y  *  G  K  R  R  N  C  S  P  R  R  T  I  R  *  I  R  R  R  I  *  *  R  S  I  I  T  V  *  S  S  E  Q  *  R  G  R  K  E  G  R  S  F  *  K  Y  *  R  R  R  R  T  I  R  R  F  *  F  *  L  F  W  W  *  F  V  E  R  I  R  D  V  Y  G  R  *  N  F  L  Q  R  P  N  I  T  V  A  S  F  N  *  F  A  K  *  S  A  Q  L  S  *  Y  K  F  K  Q  *  K  *  Q  Y  S  K  P  T  F  I  *  Q  W  Q  F  I  *  F  Q  H  E  I  S  A  *  N  S  K  S  I  S  F  S  S  *  S  N  T  S  G  S  I  F  *  S  *  F  S  I  K  C  Q  Q  F  H  T  K  I  S  I  V  E  S  I  S  R  W  P  S  Y  T  T  R  N  C  I  T  R  S  E  K  Q  R  K  Q  G  Y  F  R  K  S  K  *  H  E  Q  *  *  Q  R  E  L  R  Q  *  *  *  *  D  E  N  *  E  N  E  T  E  V  F  S  R  Q  L  *  M  F  S  K  C  G  R  N  S  S  N  R  E  Q  *  K  Y  N  *  E  N  K  K  S  H  R  G  P  *  T  *  R  *  E  G  F  I  R  E  Y  Q  I  D  K  K  A  S  N  V  T  S  S  N  V  *  V  V  K  A  T  F  T  R  R  S  I  R  *  N  I  K  I  S  K  Y  H  A  C  L  A  S  F  F  S  S  F  F  H  V  M  *  C  N  F  F  F  F  L  S  S  G  I  M  K  L  I  N  *  S  N  *  G  R  N  Y  N  G  S </second_frame>
            <third_frame>   Y  N  I  I  Y  I  N  *  Y  H  S  N  A  C  I  V  K  L  K  *  S  P  P  S  S  L  F  P  S  S  N  R  E  A  Q  L  Y  F  S  P  *  *  S  F  E  R  L  K  K  A  P  R  C  *  K  K  S  R  L  Y  L  R  P  N  S  I  L  D  L  Q  T  R  N  E  Q  F  S  I  V  A  C  K  L  I  P  T  S  H  L  S  P  S  L  Y  N  C  S  S  F  L  T  I  L  F  Y  I  D  L  D  Q  Q  E  Q  E  Q  E  K  M  M  K  I  T  R  E  S  E  E  I  V  L  L  E  E  Q  Y  D  E  L  E  D  E  Y  D  E  E  A  L  S  L  C  D  L  P  N  N  E  E  D  E  K  K  E  E  V  S  R  S  T  S  V  E  G  G  Q  L  E  D  F  D  F  S  S  S  G  G  N  L  L  K  E  S  E  M  C  T  A  D  E  I  F  Y  K  G  Q  I  L  P  L  R  H  S  I  S  L  P  S  D  R  R  N  C  H  D  T  N  S  S  S  R  S  S  S  I  R  S  Q  R  S  S  S  S  G  S  S  S  N  F  N  T  K  Y  Q  P  K  I  R  N  Q  F  H  S  H  P  S  P  T  P  Q  V  R  F  S  K  V  S  F  Q  S  N  V  N  N  S  T  R  K  S  A  L  W  S  L  F  R  V  G  L  V  T  P  P  E  I  A  L  Q  D  L  K  N  R  G  N  R  D  I  S  G  S  R  N  S  T  S  S  S  S  S  G  S  F  G  N  N  D  N  K  M  R  I  K  K  T  K  Q  R  F  S  L  G  S  C  K  C  S  A  N  V  V  E  T  V  P  I  V  N  S  R  S  T  I  K  K  I  R  K  A  T  G  D  H  E  H  E  D  K  K  D  S  S  E  N  I  K  S  T  K  K  Q  A  M  S  R  H  R  T  F  E  W  L  K  Q  L  S  L  E  G  P  S  D  E  T  *  R  F  Q  S  I  T  H  A  *  L  L  F  F  L  L  F  F  M  *  C  N  V  T  F  F  F  F  *  V  V  E  S  *  S  *  L  I  E  V  I  E  D  A  I  I  M  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0053H21.1" strand="+"/>
                <serials PGL_serial="27" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="136025" stop="137131"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1104</number_coding_nucleotides>
                  <number_encoded_amino_acids>368</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKSRLYLRPNSILDLQTRNEQFSIVACKLIPTSHLSPSLYNCSSFLTILFYIDLDQQEQEQEKMMKITRESEEIVLLEEQYDELEDEYDEEALSLCDLPNNEEDEKKEEVSRSTSVEGGQLEDFDFSSSGGNLLKESEMCTADEIFYKGQILPLRHSISLPSDRRNCHDTNSSSRSSSIRSQRSSSSGSSSNFNTKYQPKIRNQFHSHPSPTPQVRFSKVSFQSNVNNSTRKSALWSLFRVGLVTPPEIALQDLKNRGNRDISGSRNSTSSSSSGSFGNNDNKMRIKKTKQRFSLGSCKCSANVVETVPIVNSRSTIKKIRKATGDHEHEDKKDSSENIKSTKKQAMSRHRTFEWLKQLSLEGPSDET*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="28" PGL_strand="-" PGL_start="140921" PGL_stop="138263"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="140921" e_stop="140210"/>
            <exon e_start="138836" e_stop="138263"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="0.997"/>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="140921" e_stop="140210" e_length="712"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="140209" i_stop="138837" i_length="1373"/>
          </intron>
          <exon e_serial="2" e_score="0.977">
            <gDNA_exon_boundary e_start="138836" e_stop="138263" e_length="574"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140921" stop="140250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140840" stop="140210"/>
              <exon start="138836" stop="138795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140840" stop="140373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140839" stop="140362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140735" stop="140262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140723" stop="140210"/>
              <exon start="138836" stop="138732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253795" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140681" stop="140210"/>
              <exon start="138836" stop="138705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140671" stop="140210"/>
              <exon start="138836" stop="138791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140342" stop="140210"/>
              <exon start="138836" stop="138812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747600" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140273" stop="140210"/>
              <exon start="138836" stop="138263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395610" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="28" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATTTTCTCTGAAAAACAAGAGAGTGACTTTTATGTATATGTAATACGAAGATGAAGAGCTGTAATATCAATGGCTACTGGTTTAATCCGACGAGCTATTTATAGGGTTCAGTCATCTTCGCCGGCGGCGAGGCTACTTGTTGCCCGAGCTCACGCTTCGGACACCAAATCCCAGCAGGTCCAACCTCAAGTCGTTTCAAATTTACCGATGGAATCCAGATAACCCAGGGAAACCCGAGCTCCAAGAATACAAAATTGATCTGAAGGAATGTGGCCCTATGGTCTTAGACGCCCTAATCAAAATCAAGAATGAAGTTGACCCTTCACCAACCTTCAGAAGATCTTGCAGAGAAGGGATCTGTGGGTCCTGTGCCATGAACATCGACGGCTGTAATGGACTCGCTTGTTTGACAAAGATCTCATCGGATTCTGTATCGACGATTACGCCACTGCCACATATGTTTGTGATTAAGGATTTGGTAGTGGATATGACTAATTTTTATAATCAGTATAAGTCTATTGAGCCTTGGCTGAAGAGAAAAACACCTGCGCCAACGCCTGGAAAGGAGATACCTCAGAGCAAGAGCGATAAGGCTAAGTTGGATGGGATGTACGAGTGTATTCTCTGTGCTTGTTGTAGTACATCATGCCCTAGCTACTGGTGGAATCCTGAGTCTTATCTTGGTCCTGCTGCACTACTCCATGCCAATAG : ATGGATCATGGATAGCCGTGATGAACATACTCTGGAGCGCCTGGACGCAGTTAATGATGAATTCAAGCTTTATCGCTGCCACACTATTTTGAACTGTTCTCGTGCTTGCCCAAAGGGATTTAATCCTGGCAAGCTCAGAACATCAAGCGCCTGGAGATGGCGCCTTGAGCCTGCACTCTGCAGTGTAGTGTACCAGTCTATTCTGCTAACATTGATTTTGGAGGACCAGTAGGAGGTAGTTCTCAAAATAATTTATGCACAGATCGTAATTTGCTTTCTGAGATTTTTTTTTGGTGCTAGGGTGTTGCCCTTCCCCGAGCCCTGTGTGAATATGGGATTCTTTTGTGCACCGTGCTGCCTTATTCGAGATGAAAGGTGCATCTCACCTGAAATATTGTACTAACAATTAGTATGATAGCTGAAGTGAAGCAAACATGTAATAGCAGAGAGTATATACAAATTTATGAACTGATTTATCATAGAAAATAATGATTTCTATAAATATTCGTTTGAAATTATACCTCATAAAAACTTCATCAATTATATAAAACATTTCTTATATTATCGATGGTAG</gDNA_template>
            <first_frame> H  F  L  *  K  T  R  E  *  L  L  C  I  C  N  T  K  M  K  S  C  N  I  N  G  Y  W  F  N  P  T  S  Y  L  *  G  S  V  I  F  A  G  G  E  A  T  C  C  P  S  S  R  F  G  H  Q  I  P  A  G  P  T  S  S  R  F  K  F  T  D  G  I  Q  I  T  Q  G  N  P  S  S  K  N  T  K  L  I  *  R  N  V  A  L  W  S  *  T  P  *  S  K  S  R  M  K  L  T  L  H  Q  P  S  E  D  L  A  E  K  G  S  V  G  P  V  P  *  T  S  T  A  V  M  D  S  L  V  *  Q  R  S  H  R  I  L  Y  R  R  L  R  H  C  H  I  C  L  *  L  R  I  W  *  W  I  *  L  I  F  I  I  S  I  S  L  L  S  L  G  *  R  E  K  H  L  R  Q  R  L  E  R  R  Y  L  R  A  R  A  I  R  L  S  W  M  G  C  T  S  V  F  S  V  L  V  V  V  H  H  A  L  A  T  G  G  I  L  S  L  I  L  V  L  L  H  Y  S  M  P  I   : D  G  S  W  I  A  V  M  N  I  L  W  S  A  W  T  Q  L  M  M  N  S  S  F  I  A  A  T  L  F  *  T  V  L  V  L  A  Q  R  D  L  I  L  A  S  S  E  H  Q  A  P  G  D  G  A  L  S  L  H  S  A  V  *  C  T  S  L  F  C  *  H  *  F  W  R  T  S  R  R  *  F  S  K  *  F  M  H  R  S  *  F  A  F  *  D  F  F  L  V  L  G  C  C  P  S  P  S  P  V  *  I  W  D  S  F  V  H  R  A  A  L  F  E  M  K  G  A  S  H  L  K  Y  C  T  N  N  *  Y  D  S  *  S  E  A  N  M  *  *  Q  R  V  Y  T  N  L  *  T  D  L  S  *  K  I  M  I  S  I  N  I  R  L  K  L  Y  L  I  K  T  S  S  I  I  *  N  I  S  Y  I  I  D  G   </first_frame>
            <second_frame>  I  F  S  E  K  Q  E  S  D  F  Y  V  Y  V  I  R  R  *  R  A  V  I  S  M  A  T  G  L  I  R  R  A  I  Y  R  V  Q  S  S  S  P  A  A  R  L  L  V  A  R  A  H  A  S  D  T  K  S  Q  Q  V  Q  P  Q  V  V  S  N  L  P  M  E  S  R  *  P  R  E  T  R  A  P  R  I  Q  N  *  S  E  G  M  W  P  Y  G  L  R  R  P  N  Q  N  Q  E  *  S  *  P  F  T  N  L  Q  K  I  L  Q  R  R  D  L  W  V  L  C  H  E  H  R  R  L  *  W  T  R  L  F  D  K  D  L  I  G  F  C  I  D  D  Y  A  T  A  T  Y  V  C  D  *  G  F  G  S  G  Y  D  *  F  L  *  S  V  *  V  Y  *  A  L  A  E  E  K  N  T  C  A  N  A  W  K  G  D  T  S  E  Q  E  R  *  G  *  V  G  W  D  V  R  V  Y  S  L  C  L  L  *  Y  I  M  P  *  L  L  V  E  S  *  V  L  S  W  S  C  C  T  T  P  C  Q  *  :  M  D  H  G  *  P  *  *  T  Y  S  G  A  P  G  R  S  *  *  *  I  Q  A  L  S  L  P  H  Y  F  E  L  F  S  C  L  P  K  G  I  *  S  W  Q  A  Q  N  I  K  R  L  E  M  A  P  *  A  C  T  L  Q  C  S  V  P  V  Y  S  A  N  I  D  F  G  G  P  V  G  G  S  S  Q  N  N  L  C  T  D  R  N  L  L  S  E  I  F  F  W  C  *  G  V  A  L  P  R  A  L  C  E  Y  G  I  L  L  C  T  V  L  P  Y  S  R  *  K  V  H  L  T  *  N  I  V  L  T  I  S  M  I  A  E  V  K  Q  T  C  N  S  R  E  Y  I  Q  I  Y  E  L  I  Y  H  R  K  *  *  F  L  *  I  F  V  *  N  Y  T  S  *  K  L  H  Q  L  Y  K  T  F  L  I  L  S  M  V  </second_frame>
            <third_frame>   F  S  L  K  N  K  R  V  T  F  M  Y  M  *  Y  E  D  E  E  L  *  Y  Q  W  L  L  V  *  S  D  E  L  F  I  G  F  S  H  L  R  R  R  R  G  Y  L  L  P  E  L  T  L  R  T  P  N  P  S  R  S  N  L  K  S  F  Q  I  Y  R  W  N  P  D  N  P  G  K  P  E  L  Q  E  Y  K  I  D  L  K  E  C  G  P  M  V  L  D  A  L  I  K  I  K  N  E  V  D  P  S  P  T  F  R  R  S  C  R  E  G  I  C  G  S  C  A  M  N  I  D  G  C  N  G  L  A  C  L  T  K  I  S  S  D  S  V  S  T  I  T  P  L  P  H  M  F  V  I  K  D  L  V  V  D  M  T  N  F  Y  N  Q  Y  K  S  I  E  P  W  L  K  R  K  T  P  A  P  T  P  G  K  E  I  P  Q  S  K  S  D  K  A  K  L  D  G  M  Y  E  C  I  L  C  A  C  C  S  T  S  C  P  S  Y  W  W  N  P  E  S  Y  L  G  P  A  A  L  L  H  A  N  R :   W  I  M  D  S  R  D  E  H  T  L  E  R  L  D  A  V  N  D  E  F  K  L  Y  R  C  H  T  I  L  N  C  S  R  A  C  P  K  G  F  N  P  G  K  L  R  T  S  S  A  W  R  W  R  L  E  P  A  L  C  S  V  V  Y  Q  S  I  L  L  T  L  I  L  E  D  Q  *  E  V  V  L  K  I  I  Y  A  Q  I  V  I  C  F  L  R  F  F  F  G  A  R  V  L  P  F  P  E  P  C  V  N  M  G  F  F  C  A  P  C  C  L  I  R  D  E  R  C  I  S  P  E  I  L  Y  *  Q  L  V  *  *  L  K  *  S  K  H  V  I  A  E  S  I  Y  K  F  M  N  *  F  I  I  E  N  N  D  F  Y  K  Y  S  F  E  I  I  P  H  K  N  F  I  N  Y  I  K  H  F  L  Y  Y  R  W  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0053H21.1" strand="-"/>
                <serials PGL_serial="28" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="140835" stop="140210"/>
                    <exon start="138836" stop="138605"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>855</number_coding_nucleotides>
                  <number_encoded_amino_acids>285</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SDELFIGFSHLRRRRGYLLPELTLRTPNPSRSNLKSFQIYRWNPDNPGKPELQEYKIDLKECGPMVLDALIKIKNEVDPSPTFRRSCREGICGSCAMNIDGCNGLACLTKISSDSVSTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKTPAPTPGKEIPQSKSDKAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWIMDSRDEHTLERLDAVNDEFKLYRCHTILNCSRACPKGFNPGKLRTSSAWRWRLEPALCSVVYQSILLTLILEDQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="29" PGL_strand="+" PGL_start="141728" PGL_stop="145074"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="141728" e_stop="142038"/>
            <exon e_start="142406" e_stop="142788"/>
            <exon e_start="144092" e_stop="144328"/>
            <exon e_start="144537" e_stop="145074"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.984"/>
          <exon-intron don_prob="0.957" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.804" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.914"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="141728" e_stop="142038" e_length="311"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="142039" i_stop="142405" i_length="367"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="142406" e_stop="142788" e_length="383"/>
          </exon>
          <intron i_serial="2" don_prob="0.957" acc_prob="0.977">
            <gDNA_intron_boundary i_start="142789" i_stop="144091" i_length="1303"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="144092" e_stop="144328" e_length="237"/>
          </exon>
          <intron i_serial="3" don_prob="0.804" acc_prob="0.999">
            <gDNA_intron_boundary i_start="144329" i_stop="144536" i_length="208"/>
          </intron>
          <exon e_serial="4" e_score="0.914">
            <gDNA_exon_boundary e_start="144537" e_stop="145074" e_length="538"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141728" stop="142038"/>
              <exon start="142406" stop="142690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335131" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141728" stop="142038"/>
              <exon start="142406" stop="142481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336900" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141856" stop="142038"/>
              <exon start="142406" stop="142772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142533" stop="142788"/>
              <exon start="144092" stop="144328"/>
              <exon start="144537" stop="144852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733260" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144245" stop="144328"/>
              <exon start="144537" stop="145074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453674" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="29" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCTTCTTTCTTTTCTTCAAAAAAAAAAAAAAATCCTCTTTCACTCTACAGCCAGCAGTCTAAGATGTTAAGCTCCTGTTTTGGGAGCTGCTTTGGTGGGGACGATGGTGATGATCTTTTATGGCATATGGACTTGAAGCCACATGCCACAGGTGAATATTCTGTTGCTGTAGTTCAGGCCAATTCTTTGCTTGAAGATCAAGGTCAAGTTTTTACAACCCCTAGTGCTACTTATGTGGGTGTTTATGATGGTCATGGTGGCCCGCAAGCTTCTCGCTTCATCAACAACAATCTCTTCCCTCAACTACAAA : AGCTGGCTTTGGAAGAAGGAGGATTGTCTGAGGACGTGATCAGGAAAGCATTTGATGCTATTGAGGAGGGATTCTTGCGTTTGGTGAAACAGTCTTGGCTGGATCAACCTCAGATTGCATCTGCAGGGTCTTGTTGTCTATTTGGAGCAATCTCAAAAGATGAATTGTATGTGGCAAATCTTGGGGACTCCAGGGCAGTGCTTGGCAGGAGAGCAGAGACAGGCCAGACGGGTGATTCAGCAGTAGTAGTGGCAGAACGTTTGTCGATAGATCATAATGTTGGGGTTGAGGAGGTTAGGAAGGAGGTAGAGGCACTGCATCCAGATGATTCTCATGTTGTGGTCTACGTTCGAGGGGTTTGGAGAATTAAGGGTATAATTCAG : GTTTCTAGATCAATTGGTGATGTCTATCTGAAGAAACCTGAGTTTAATAGAGATCCTATGTTCATACAATATGGATATCCTATTCCTTTAAAAAGAGCTGTAATGTCAGCAGAGCCCTCCATATTGATCCGAAAGATAAGACCAGAAGACTTATTTTTGATATTTGCATCGGATGGCCTATGGGATCAACTAACCGATGACGAAGCTAAGGATATTGTTTTGAAGAATCCTAGAATT : GGAATAGCAAAACGATTAGTGAGAGCTGCCCTTGAGGGTGCTGCAGAGAAGAAAGAAATGAGATATGAGGACATCAAACGACTAGAGAAGGGGGAAAGGCGGCACGTTCATGATGATATCACAGTTATTGTGATATATTTGGATCACCCTGGAAGGTCCTCAAATTCTGGAATTAACATTGTTAAGGGCACGAATGTCCCTCTTGACATATACTCCTTGAACTCGGGTCATTAAGGAGAGAACATATCTTATGTTTCCCCATGAAAAGTGTCTAATACATGTATACATTATATATACCATTTTGTAAATACGTCGTCTAAAACTTGGAGAGTTTCTTTATATACTTTTAGATAACAATCAGAAGGGCCAACCATGTACATTTACCTTGATGTACACGTACCTTCTGTATTGGAGTTGATAGACTAAGCTGGTGACAAAACCAGCTTGAGCTTATACTTCTTTTTTTGACACTTCTGCTTAAAGCCCTGTTTGTTTGTACCTTGTTATACTTTCCTGGCAATTATACTACAACTCTTCA</gDNA_template>
            <first_frame> V  F  F  L  F  F  K  K  K  K  K  S  S  F  T  L  Q  P  A  V  *  D  V  K  L  L  F  W  E  L  L  W  W  G  R  W  *  *  S  F  M  A  Y  G  L  E  A  T  C  H  R  *  I  F  C  C  C  S  S  G  Q  F  F  A  *  R  S  R  S  S  F  Y  N  P  *  C  Y  L  C  G  C  L  *  W  S  W  W  P  A  S  F  S  L  H  Q  Q  Q  S  L  P  S  T  T  K :   A  G  F  G  R  R  R  I  V  *  G  R  D  Q  E  S  I  *  C  Y  *  G  G  I  L  A  F  G  E  T  V  L  A  G  S  T  S  D  C  I  C  R  V  L  L  S  I  W  S  N  L  K  R  *  I  V  C  G  K  S  W  G  L  Q  G  S  A  W  Q  E  S  R  D  R  P  D  G  *  F  S  S  S  S  G  R  T  F  V  D  R  S  *  C  W  G  *  G  G  *  E  G  G  R  G  T  A  S  R  *  F  S  C  C  G  L  R  S  R  G  L  E  N  *  G  Y  N  S   : G  F  *  I  N  W  *  C  L  S  E  E  T  *  V  *  *  R  S  Y  V  H  T  I  W  I  S  Y  S  F  K  K  S  C  N  V  S  R  A  L  H  I  D  P  K  D  K  T  R  R  L  I  F  D  I  C  I  G  W  P  M  G  S  T  N  R  *  R  S  *  G  Y  C  F  E  E  S  *  N   : W  N  S  K  T  I  S  E  S  C  P  *  G  C  C  R  E  E  R  N  E  I  *  G  H  Q  T  T  R  E  G  G  K  A  A  R  S  *  *  Y  H  S  Y  C  D  I  F  G  S  P  W  K  V  L  K  F  W  N  *  H  C  *  G  H  E  C  P  S  *  H  I  L  L  E  L  G  S  L  R  R  E  H  I  L  C  F  P  M  K  S  V  *  Y  M  Y  T  L  Y  I  P  F  C  K  Y  V  V  *  N  L  E  S  F  F  I  Y  F  *  I  T  I  R  R  A  N  H  V  H  L  P  *  C  T  R  T  F  C  I  G  V  D  R  L  S  W  *  Q  N  Q  L  E  L  I  L  L  F  L  T  L  L  L  K  A  L  F  V  C  T  L  L  Y  F  P  G  N  Y  T  T  T  L   </first_frame>
            <second_frame>  S  S  F  F  S  S  K  K  K  K  N  P  L  S  L  Y  S  Q  Q  S  K  M  L  S  S  C  F  G  S  C  F  G  G  D  D  G  D  D  L  L  W  H  M  D  L  K  P  H  A  T  G  E  Y  S  V  A  V  V  Q  A  N  S  L  L  E  D  Q  G  Q  V  F  T  T  P  S  A  T  Y  V  G  V  Y  D  G  H  G  G  P  Q  A  S  R  F  I  N  N  N  L  F  P  Q  L  Q   : K  L  A  L  E  E  G  G  L  S  E  D  V  I  R  K  A  F  D  A  I  E  E  G  F  L  R  L  V  K  Q  S  W  L  D  Q  P  Q  I  A  S  A  G  S  C  C  L  F  G  A  I  S  K  D  E  L  Y  V  A  N  L  G  D  S  R  A  V  L  G  R  R  A  E  T  G  Q  T  G  D  S  A  V  V  V  A  E  R  L  S  I  D  H  N  V  G  V  E  E  V  R  K  E  V  E  A  L  H  P  D  D  S  H  V  V  V  Y  V  R  G  V  W  R  I  K  G  I  I  Q  :  V  S  R  S  I  G  D  V  Y  L  K  K  P  E  F  N  R  D  P  M  F  I  Q  Y  G  Y  P  I  P  L  K  R  A  V  M  S  A  E  P  S  I  L  I  R  K  I  R  P  E  D  L  F  L  I  F  A  S  D  G  L  W  D  Q  L  T  D  D  E  A  K  D  I  V  L  K  N  P  R  I  :  G  I  A  K  R  L  V  R  A  A  L  E  G  A  A  E  K  K  E  M  R  Y  E  D  I  K  R  L  E  K  G  E  R  R  H  V  H  D  D  I  T  V  I  V  I  Y  L  D  H  P  G  R  S  S  N  S  G  I  N  I  V  K  G  T  N  V  P  L  D  I  Y  S  L  N  S  G  H  *  G  E  N  I  S  Y  V  S  P  *  K  V  S  N  T  C  I  H  Y  I  Y  H  F  V  N  T  S  S  K  T  W  R  V  S  L  Y  T  F  R  *  Q  S  E  G  P  T  M  Y  I  Y  L  D  V  H  V  P  S  V  L  E  L  I  D  *  A  G  D  K  T  S  L  S  L  Y  F  F  F  *  H  F  C  L  K  P  C  L  F  V  P  C  Y  T  F  L  A  I  I  L  Q  L  F  </second_frame>
            <third_frame>   L  L  S  F  L  Q  K  K  K  K  I  L  F  H  S  T  A  S  S  L  R  C  *  A  P  V  L  G  A  A  L  V  G  T  M  V  M  I  F  Y  G  I  W  T  *  S  H  M  P  Q  V  N  I  L  L  L  *  F  R  P  I  L  C  L  K  I  K  V  K  F  L  Q  P  L  V  L  L  M  W  V  F  M  M  V  M  V  A  R  K  L  L  A  S  S  T  T  I  S  S  L  N  Y  K  :  S  W  L  W  K  K  E  D  C  L  R  T  *  S  G  K  H  L  M  L  L  R  R  D  S  C  V  W  *  N  S  L  G  W  I  N  L  R  L  H  L  Q  G  L  V  V  Y  L  E  Q  S  Q  K  M  N  C  M  W  Q  I  L  G  T  P  G  Q  C  L  A  G  E  Q  R  Q  A  R  R  V  I  Q  Q  *  *  W  Q  N  V  C  R  *  I  I  M  L  G  L  R  R  L  G  R  R  *  R  H  C  I  Q  M  I  L  M  L  W  S  T  F  E  G  F  G  E  L  R  V  *  F  R :   F  L  D  Q  L  V  M  S  I  *  R  N  L  S  L  I  E  I  L  C  S  Y  N  M  D  I  L  F  L  *  K  E  L  *  C  Q  Q  S  P  P  Y  *  S  E  R  *  D  Q  K  T  Y  F  *  Y  L  H  R  M  A  Y  G  I  N  *  P  M  T  K  L  R  I  L  F  *  R  I  L  E  L :   E  *  Q  N  D  *  *  E  L  P  L  R  V  L  Q  R  R  K  K  *  D  M  R  T  S  N  D  *  R  R  G  K  G  G  T  F  M  M  I  S  Q  L  L  *  Y  I  W  I  T  L  E  G  P  Q  I  L  E  L  T  L  L  R  A  R  M  S  L  L  T  Y  T  P  *  T  R  V  I  K  E  R  T  Y  L  M  F  P  H  E  K  C  L  I  H  V  Y  I  I  Y  T  I  L  *  I  R  R  L  K  L  G  E  F  L  Y  I  L  L  D  N  N  Q  K  G  Q  P  C  T  F  T  L  M  Y  T  Y  L  L  Y  W  S  *  *  T  K  L  V  T  K  P  A  *  A  Y  T  S  F  F  D  T  S  A  *  S  P  V  C  L  Y  L  V  I  L  S  W  Q  L  Y  Y  N  S  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0053H21.1" strand="+"/>
                <serials PGL_serial="29" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="141729" stop="142038"/>
                    <exon start="142406" stop="142788"/>
                    <exon start="144092" stop="144328"/>
                    <exon start="144537" stop="144770"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1161</number_coding_nucleotides>
                  <number_encoded_amino_acids>387</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSFFSSKKKKNPLSLYSQQSKMLSSCFGSCFGGDDGDDLLWHMDLKPHATGEYSVAVVQANSLLEDQGQVFTTPSATYVGVYDGHGGPQASRFINNNLFPQLQKLALEEGGLSEDVIRKAFDAIEEGFLRLVKQSWLDQPQIASAGSCCLFGAISKDELYVANLGDSRAVLGRRAETGQTGDSAVVVAERLSIDHNVGVEEVRKEVEALHPDDSHVVVYVRGVWRIKGIIQVSRSIGDVYLKKPEFNRDPMFIQYGYPIPLKRAVMSAEPSILIRKIRPEDLFLIFASDGLWDQLTDDEAKDIVLKNPRIGIAKRLVRAALEGAAEKKEMRYEDIKRLEKGERRHVHDDITVIVIYLDHPGRSSNSGINIVKGTNVPLDIYSLNSGH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="30" PGL_strand="-" PGL_start="146808" PGL_stop="145984"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="146808" e_stop="145984"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="146808" e_stop="145984" e_length="825"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146808" stop="145984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732249" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="30" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGTTTAAGAGGGAAATGCTACGTACATCTTCCTTCTAATTTATTTGTGTTAAACGAGCATTTTAATTAACACTTTTCTTGTTTTTTAGTTAAATACAGAAATATTTAAAAGTTTCATTAGACAAATAAATTGACATATCAATTTATCTCACCTTGGGGAAGCTGATACAAGAATGAGTTTGGAAAAGAGATCGGGACGAAAAATAGAAGCAACAACACCAGTCATAGCCGATAAGGAATGGCCTAAGTACATGCAACGATTGATTTGAAGTTCCTCCAAAATGGAAATTAAATCGTACGCATAACCTTCAAGGGAAGAATATCGATCAAAATCGAAGTAATCAGGATTTGTCGGTCCAGCACCCATATTATCATAAAGTACAACACGATATTCATCAACGAGGTAAGGAACAAGCTGTTTCCAAACAGACTGATCGGTGCCGAAGCCATGACCCAGTACGATGGTCTTTTCGCCTGAACCTACAACTTTTACGTTGTGAGCTTCTTCACCGATTCCCATTTTTTGGTCTGAGTTTTTTGTTTCCCAATTTTTAGACTTTATTAAGGTGTGGTGTGGAAATTGGAGGAGACGACCAGCCGACTTTTTGGTACGAAGGAAGATGGATTGGCCGGTGGCTGTTAATTTTAGGTTCACAAATCATAACATTAGTATTGCAAGAGTGCTAATTAATGGAAGGGTTTTTATGGTTATCAAGTTATTGAAATACTTTAGTAAAGTTACTTTATCTGTTTTATGCTAAAATAAAAGTCACACATATTTTTTACTATAATAAAATATTAATAACTTCTACCGAAAAACACTAGA</gDNA_template>
            <first_frame> R  L  R  G  K  C  Y  V  H  L  P  S  N  L  F  V  L  N  E  H  F  N  *  H  F  S  C  F  L  V  K  Y  R  N  I  *  K  F  H  *  T  N  K  L  T  Y  Q  F  I  S  P  W  G  S  *  Y  K  N  E  F  G  K  E  I  G  T  K  N  R  S  N  N  T  S  H  S  R  *  G  M  A  *  V  H  A  T  I  D  L  K  F  L  Q  N  G  N  *  I  V  R  I  T  F  K  G  R  I  S  I  K  I  E  V  I  R  I  C  R  S  S  T  H  I  I  I  K  Y  N  T  I  F  I  N  E  V  R  N  K  L  F  P  N  R  L  I  G  A  E  A  M  T  Q  Y  D  G  L  F  A  *  T  Y  N  F  Y  V  V  S  F  F  T  D  S  H  F  L  V  *  V  F  C  F  P  I  F  R  L  Y  *  G  V  V  W  K  L  E  E  T  T  S  R  L  F  G  T  K  E  D  G  L  A  G  G  C  *  F  *  V  H  K  S  *  H  *  Y  C  K  S  A  N  *  W  K  G  F  Y  G  Y  Q  V  I  E  I  L  *  *  S  Y  F  I  C  F  M  L  K  *  K  S  H  I  F  F  T  I  I  K  Y  *  *  L  L  P  K  N  T  R </first_frame>
            <second_frame>  V  *  E  G  N  A  T  Y  I  F  L  L  I  Y  L  C  *  T  S  I  L  I  N  T  F  L  V  F  *  L  N  T  E  I  F  K  S  F  I  R  Q  I  N  *  H  I  N  L  S  H  L  G  E  A  D  T  R  M  S  L  E  K  R  S  G  R  K  I  E  A  T  T  P  V  I  A  D  K  E  W  P  K  Y  M  Q  R  L  I  *  S  S  S  K  M  E  I  K  S  Y  A  *  P  S  R  E  E  Y  R  S  K  S  K  *  S  G  F  V  G  P  A  P  I  L  S  *  S  T  T  R  Y  S  S  T  R  *  G  T  S  C  F  Q  T  D  *  S  V  P  K  P  *  P  S  T  M  V  F  S  P  E  P  T  T  F  T  L  *  A  S  S  P  I  P  I  F  W  S  E  F  F  V  S  Q  F  L  D  F  I  K  V  W  C  G  N  W  R  R  R  P  A  D  F  L  V  R  R  K  M  D  W  P  V  A  V  N  F  R  F  T  N  H  N  I  S  I  A  R  V  L  I  N  G  R  V  F  M  V  I  K  L  L  K  Y  F  S  K  V  T  L  S  V  L  C  *  N  K  S  H  T  Y  F  L  L  *  *  N  I  N  N  F  Y  R  K  T  L   </second_frame>
            <third_frame>   F  K  R  E  M  L  R  T  S  S  F  *  F  I  C  V  K  R  A  F  *  L  T  L  F  L  F  F  S  *  I  Q  K  Y  L  K  V  S  L  D  K  *  I  D  I  S  I  Y  L  T  L  G  K  L  I  Q  E  *  V  W  K  R  D  R  D  E  K  *  K  Q  Q  H  Q  S  *  P  I  R  N  G  L  S  T  C  N  D  *  F  E  V  P  P  K  W  K  L  N  R  T  H  N  L  Q  G  K  N  I  D  Q  N  R  S  N  Q  D  L  S  V  Q  H  P  Y  Y  H  K  V  Q  H  D  I  H  Q  R  G  K  E  Q  A  V  S  K  Q  T  D  R  C  R  S  H  D  P  V  R  W  S  F  R  L  N  L  Q  L  L  R  C  E  L  L  H  R  F  P  F  F  G  L  S  F  L  F  P  N  F  *  T  L  L  R  C  G  V  E  I  G  G  D  D  Q  P  T  F  W  Y  E  G  R  W  I  G  R  W  L  L  I  L  G  S  Q  I  I  T  L  V  L  Q  E  C  *  L  M  E  G  F  L  W  L  S  S  Y  *  N  T  L  V  K  L  L  Y  L  F  Y  A  K  I  K  V  T  H  I  F  Y  Y  N  K  I  L  I  T  S  T  E  K  H  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0053H21.1" strand="-"/>
                <serials PGL_serial="30" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="146545" stop="146255"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FEVPPKWKLNRTHNLQGKNIDQNRSNQDLSVQHPYYHKVQHDIHQRGKEQAVSKQTDRCRSHDPVRWSFRLNLQLLRCELLHRFPFFGLSFLFPNF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0053H21.1" strand="-"/>
                <serials PGL_serial="30" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="146309" stop="146049"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASSPIPIFWSEFFVSQFLDFIKVWCGNWRRRPADFLVRRKMDWPVAVNFRFTNHNISIARVLINGRVFMVIKLLKYFSKVTLSVLC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 608 chains have been computed
$ 
$ memory statistics:
$ 1092600 bytes spliced alignments in total
$ 375 spliced alignments have been stored
$ 2913 bytes was the average size of a spliced alignment
$ 48872 bytes predicted gene locations in total
$ 30 predicted gene locations have been stored
$ 1629 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 685 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 11:04:15
-->
