<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 10:59:36"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02SLe0057O21-q26C2/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02SLe0057O21-q26C2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0057O21-q26C2/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At3g26710" ref_strand="+" ref_description="C2_At3g26710">
      <seq>taacgtgtgggcacatttgggtgttttgttgattggcaccaaacagttccatggcagcaaaacttgtactctctcctgtctctcttccgtggagtttacagagtgtacagaaaccgcatgtatgtctcagaacaaaacccagaagccgcttcgccgttaaagcctatagcgatgtgcttttctgtgctgctagtgctactgctctactttatcaagaaaacccttcttctctcttctcacttgcagcagcagcagattctggttattcattggctagctattacacttctctaggtctatttgtcatctctgttcccggtctttggtcccttattaaacgatctgttaaatccaagattgtgcagaagacatttattaagcaaggaatagatgagggaaagaaagcggctaaccaggttgctggggaaattctttccttcttcactcgaaataatttcgctgtgttggatagaggagagactataacgtttgagggaatgatggttccaagccgaggacaggcagcattgttaactttctgcacgtgtgtaagcttgggaagtgttgccctagttcttactataacagttccagatgtaggcaataattggttctggattactgccttgagtccattagcgggtgtatattattggactcgagcatccagaaaggagcagatcaaggttaaaatgattgttgcagatgatggaagcttgtcggaaatagttgttcaaggtgatgaccaagaagtagagaaaatgcggaaggagctacagctgagtgaaaaaggcatggtttatgttaagggcttacttgaaaggtgatattacttggttttcttgtaagatatatatgtctgaaacatactcctccataatgcttggtcaacaacgttcttttgttgtaacgtggaaagttctaagaagctgtaaattaattgcccatgcatatatttgtcagaagtttatgtgcaataggggtgaatatgtctactatttgtttgttggtttcttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0057O21-q26C2/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02SLe0057O21.2" temp_strand="-" temp_description="C02SLe0057O21.2  AC215456.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0057O21 sequenced_by:kribb upload_account_name:korea">
        <position start="37462" stop="35045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37162" g_stop="36807" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="356" r_length="356" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36806" i_stop="36729" i_length="78">
            <donor d_prob="0.814" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36728" g_stop="36598" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="487" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36597" i_stop="35968" i_length="630">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35967" g_stop="35815" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="640" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35814" i_stop="35728" i_length="87">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35727" g_stop="35343" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="1025" r_length="385" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0057O21.2" gen_strand="-" ref_id="C2_At3g26710" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1025</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0057O21.2" gen_strand="-"/>
        <rDNA rDNA_id="C2_At3g26710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37162" e_stop="36807"/>
          <exon e_start="36728" e_stop="36598"/>
          <exon e_start="35967" e_stop="35815"/>
          <exon e_start="35727" e_stop="35343"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACGTGTGGGCACATTTGGGTGTTTTGTTGATTGGCACCAAACAGTTCCATGGCAGCAAAACTTGTACTCTCTCCTGTCTCTCTTCCGTGGAGTTTACAGAGTGTACAGAAACCGCATGTATGTCTCAGAACAAAACCCAGAAGCCGCTTCGCCGTTAAAGCCTATAGCGATGTGCTTTTCTGTGCTGCTAGTGCTACTGCTCTACTTTATCAAGAAAACCCTTCTTCTCTCTTCTCACTTGCAGCAGCAGCAGATTCTGGTTATTCATTGGCTAGCTATTACACTTCTCTAGGTCTATTTGTCATCTCTGTTCCCGGTCTTTGGTCCCTTATTAAACGATCTGTTAAATCCAAGGTTATTTATTTCGTTTGATTCTTTGTTTCTGTTGGGTTTGGGTTTGGTTTGTAATTGATGGTGAATTTTTGAATGCAGATTGTGCAGAAGACATTTATTAAGCAAGGAATAGATGAGGGAAAGAAAGCGGCTAACCAGGTTGCTGGGGAAATTCTTTCCTTCTTCACTCGAAATAATTTCGCTGTGTTGGATAGAGGAGAGACTATAACGTTAGTAGTATCCCTTTTTTATTTCTCTTACCTTTGAGCAACTTTTACCTTATAATATTAGAATTGGACAATTGCATCCTTTAGCTGTAATGGATGTGAATAACAAGTGTTTAACGTCTTTGGCCTTAAATGGCAGCAAACTGTGTCATTGGCTGCATGAACTTGTCTTTTCTCATGTTTATTATTGCAATGTTATTTTCAGCTGAAACTGAGATTTCTTTTCCAATCTTTGCATCTAAGCACACTCTGTAACTTCTTTTTTTACTTCTTTCCGGAAGCTTGTGCCTACTAATGAATTGATGACGTTTTGAAAACCGTTCATCATCACTACTGTTATTTAATTATCTCATGTAGGTGAGTGACATCGATGCTGTTTTCACCATATCATCTTCTGTTTGGCCATAGGGTGGGTGGGGGGGGGGGAATTCAATCTAATGCTTCTGATTTACTAAATTGCCTTTTCTAGCAAGCGAAGACGAGTTCATTCATATAAGTATATTTGTCATGCCTTGACATGTGAGAGTGTTTTTTTGCCTCAATTGGTTTAACTTTACTAATAACAAACACCTACATAGATTGTTTCAGCCTCTCTCTATTGATATATGTTAGTATAACTTTTGAATCATGAAGGTTTGAGGGAATGATGGTTCCAAGCCGAGGACAGGCAGCATTGTTAACTTTCTGCACGTGTGTAAGCTTGGGAAGTGTTGCCCTAGTTCTTACTATAACAGTTCCAGATGTAGGCAATAATTGGTTCTGGATTACTGCCTTGAGTCCATTAGCGTAAGTACTACTAATAAAAGAAAAATCATCTGCCAACTCTGATTTTGAATTTCTGTTGACTGGAAATCGTATTTAAATTTGGAGCAGGGGTGTATATTATTGGACTCGAGCATCCAGAAAGGAGCAGATCAAGGTTAAAATGATTGTTGCAGATGATGGAAGCTTGTCGGAAATAGTTGTTCAAGGTGATGACCAAGAAGTAGAGAAAATGCGGAAGGAGCTACAGCTGAGTGAAAAAGGCATGGTTTATGTTAAGGGCTTACTTGAAAGGTGATATTACTTGGTTTTCTTGTAAGATATATATGTCTGAAACATACTCCTCCATAATGCTTGGTCAACAACGTTCTTTTGTTGTAACGTGGAAAGTTCTAAGAAGCTGTAAATTAATTGCCCATGCATATATTTGTCAGAAGTTTATGTGCAATAGGGGTGAATATGTCTACTATTTGTTTGTTGGTTTCTTACTACAACC</genome_strand>
        <mrna_strand>TAACGTGTGGGCACATTTGGGTGTTTTGTTGATTGGCACCAAACAGTTCCATGGCAGCAAAACTTGTACTCTCTCCTGTCTCTCTTCCGTGGAGTTTACAGAGTGTACAGAAACCGCATGTATGTCTCAGAACAAAACCCAGAAGCCGCTTCGCCGTTAAAGCCTATAGCGATGTGCTTTTCTGTGCTGCTAGTGCTACTGCTCTACTTTATCAAGAAAACCCTTCTTCTCTCTTCTCACTTGCAGCAGCAGCAGATTCTGGTTATTCATTGGCTAGCTATTACACTTCTCTAGGTCTATTTGTCATCTCTGTTCCCGGTCTTTGGTCCCTTATTAAACGATCTGTTAAATCCAAG..............................................................................ATTGTGCAGAAGACATTTATTAAGCAAGGAATAGATGAGGGAAAGAAAGCGGCTAACCAGGTTGCTGGGGAAATTCTTTCCTTCTTCACTCGAAATAATTTCGCTGTGTTGGATAGAGGAGAGACTATAAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGAGGGAATGATGGTTCCAAGCCGAGGACAGGCAGCATTGTTAACTTTCTGCACGTGTGTAAGCTTGGGAAGTGTTGCCCTAGTTCTTACTATAACAGTTCCAGATGTAGGCAATAATTGGTTCTGGATTACTGCCTTGAGTCCATTAGC.......................................................................................GGGTGTATATTATTGGACTCGAGCATCCAGAAAGGAGCAGATCAAGGTTAAAATGATTGTTGCAGATGATGGAAGCTTGTCGGAAATAGTTGTTCAAGGTGATGACCAAGAAGTAGAGAAAATGCGGAAGGAGCTACAGCTGAGTGAAAAAGGCATGGTTTATGTTAAGGGCTTACTTGAAAGGTGATATTACTTGGTTTTCTTGTAAGATATATATGTCTGAAACATACTCCTCCATAATGCTTGGTCAACAACGTTCTTTTGTTGTAACGTGGAAAGTTCTAAGAAGCTGTAAATTAATTGCCCATGCATATATTTGTCAGAAGTTTATGTGCAATAGGGGTGAATATGTCTACTATTTGTTTGTTGGTTTCTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>1</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="37162" PGL_stop="35343"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37162" e_stop="36807"/>
            <exon e_start="36728" e_stop="36598"/>
            <exon e_start="35967" e_stop="35815"/>
            <exon e_start="35727" e_stop="35343"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.814" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.932" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="37162" e_stop="36807" e_length="356"/>
          </exon>
          <intron i_serial="1" don_prob="0.814" acc_prob="0.999">
            <gDNA_intron_boundary i_start="36806" i_stop="36729" i_length="78"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="36728" e_stop="36598" e_length="131"/>
          </exon>
          <intron i_serial="2" don_prob="0.932" acc_prob="0.992">
            <gDNA_intron_boundary i_start="36597" i_stop="35968" i_length="630"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="35967" e_stop="35815" e_length="153"/>
          </exon>
          <intron i_serial="3" don_prob="0.965" acc_prob="0.995">
            <gDNA_intron_boundary i_start="35814" i_stop="35728" i_length="87"/>
          </intron>
          <exon e_serial="4" e_score="0.987">
            <gDNA_exon_boundary e_start="35727" e_stop="35343" e_length="385"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37162" stop="36807"/>
              <exon start="36728" stop="36598"/>
              <exon start="35967" stop="35815"/>
              <exon start="35727" stop="35343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At3g26710" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAACGTGTGGGCACATTTGGGTGTTTTGTTGATTGGCACCAAACAGTTCCATGGCAGCAAAACTTGTACTCTCTCCTGTCTCTCTTCCGTGGAGTTTACAGAGTGTACAGAAACCGCATGTATGTCTCAGAACAAAACCCAGAAGCCGCTTCGCCGTTAAAGCCTATAGCGATGTGCTTTTCTGTGCTGCTAGTGCTACTGCTCTACTTTATCAAGAAAACCCTTCTTCTCTCTTCTCACTTGCAGCAGCAGCAGATTCTGGTTATTCATTGGCTAGCTATTACACTTCTCTAGGTCTATTTGTCATCTCTGTTCCCGGTCTTTGGTCCCTTATTAAACGATCTGTTAAATCCAAG : ATTGTGCAGAAGACATTTATTAAGCAAGGAATAGATGAGGGAAAGAAAGCGGCTAACCAGGTTGCTGGGGAAATTCTTTCCTTCTTCACTCGAAATAATTTCGCTGTGTTGGATAGAGGAGAGACTATAAC : GTTTGAGGGAATGATGGTTCCAAGCCGAGGACAGGCAGCATTGTTAACTTTCTGCACGTGTGTAAGCTTGGGAAGTGTTGCCCTAGTTCTTACTATAACAGTTCCAGATGTAGGCAATAATTGGTTCTGGATTACTGCCTTGAGTCCATTAGC : GGGTGTATATTATTGGACTCGAGCATCCAGAAAGGAGCAGATCAAGGTTAAAATGATTGTTGCAGATGATGGAAGCTTGTCGGAAATAGTTGTTCAAGGTGATGACCAAGAAGTAGAGAAAATGCGGAAGGAGCTACAGCTGAGTGAAAAAGGCATGGTTTATGTTAAGGGCTTACTTGAAAGGTGATATTACTTGGTTTTCTTGTAAGATATATATGTCTGAAACATACTCCTCCATAATGCTTGGTCAACAACGTTCTTTTGTTGTAACGTGGAAAGTTCTAAGAAGCTGTAAATTAATTGCCCATGCATATATTTGTCAGAAGTTTATGTGCAATAGGGGTGAATATGTCTACTATTTGTTTGTTGGTTTCTTACTACAACC</gDNA_template>
            <first_frame> *  R  V  G  T  F  G  C  F  V  D  W  H  Q  T  V  P  W  Q  Q  N  L  Y  S  L  L  S  L  F  R  G  V  Y  R  V  Y  R  N  R  M  Y  V  S  E  Q  N  P  E  A  A  S  P  L  K  P  I  A  M  C  F  S  V  L  L  V  L  L  L  Y  F  I  K  K  T  L  L  L  S  S  H  L  Q  Q  Q  Q  I  L  V  I  H  W  L  A  I  T  L  L  *  V  Y  L  S  S  L  F  P  V  F  G  P  L  L  N  D  L  L  N  P  R :   L  C  R  R  H  L  L  S  K  E  *  M  R  E  R  K  R  L  T  R  L  L  G  K  F  F  P  S  S  L  E  I  I  S  L  C  W  I  E  E  R  L  *   : R  L  R  E  *  W  F  Q  A  E  D  R  Q  H  C  *  L  S  A  R  V  *  A  W  E  V  L  P  *  F  L  L  *  Q  F  Q  M  *  A  I  I  G  S  G  L  L  P  *  V  H  *   : R  V  Y  I  I  G  L  E  H  P  E  R  S  R  S  R  L  K  *  L  L  Q  M  M  E  A  C  R  K  *  L  F  K  V  M  T  K  K  *  R  K  C  G  R  S  Y  S  *  V  K  K  A  W  F  M  L  R  A  Y  L  K  G  D  I  T  W  F  S  C  K  I  Y  M  S  E  T  Y  S  S  I  M  L  G  Q  Q  R  S  F  V  V  T  W  K  V  L  R  S  C  K  L  I  A  H  A  Y  I  C  Q  K  F  M  C  N  R  G  E  Y  V  Y  Y  L  F  V  G  F  L  L  Q   </first_frame>
            <second_frame>  N  V  W  A  H  L  G  V  L  L  I  G  T  K  Q  F  H  G  S  K  T  C  T  L  S  C  L  S  S  V  E  F  T  E  C  T  E  T  A  C  M  S  Q  N  K  T  Q  K  P  L  R  R  *  S  L  *  R  C  A  F  L  C  C  *  C  Y  C  S  T  L  S  R  K  P  F  F  S  L  L  T  C  S  S  S  R  F  W  L  F  I  G  *  L  L  H  F  S  R  S  I  C  H  L  C  S  R  S  L  V  P  Y  *  T  I  C  *  I  Q   : D  C  A  E  D  I  Y  *  A  R  N  R  *  G  K  E  S  G  *  P  G  C  W  G  N  S  F  L  L  H  S  K  *  F  R  C  V  G  *  R  R  D  Y  N  :  V  *  G  N  D  G  S  K  P  R  T  G  S  I  V  N  F  L  H  V  C  K  L  G  K  C  C  P  S  S  Y  Y  N  S  S  R  C  R  Q  *  L  V  L  D  Y  C  L  E  S  I  S  :  G  C  I  L  L  D  S  S  I  Q  K  G  A  D  Q  G  *  N  D  C  C  R  *  W  K  L  V  G  N  S  C  S  R  *  *  P  R  S  R  E  N  A  E  G  A  T  A  E  *  K  R  H  G  L  C  *  G  L  T  *  K  V  I  L  L  G  F  L  V  R  Y  I  C  L  K  H  T  P  P  *  C  L  V  N  N  V  L  L  L  *  R  G  K  F  *  E  A  V  N  *  L  P  M  H  I  F  V  R  S  L  C  A  I  G  V  N  M  S  T  I  C  L  L  V  S  Y  Y  N  </second_frame>
            <third_frame>   T  C  G  H  I  W  V  F  C  *  L  A  P  N  S  S  M  A  A  K  L  V  L  S  P  V  S  L  P  W  S  L  Q  S  V  Q  K  P  H  V  C  L  R  T  K  P  R  S  R  F  A  V  K  A  Y  S  D  V  L  F  C  A  A  S  A  T  A  L  L  Y  Q  E  N  P  S  S  L  F  S  L  A  A  A  A  D  S  G  Y  S  L  A  S  Y  Y  T  S  L  G  L  F  V  I  S  V  P  G  L  W  S  L  I  K  R  S  V  K  S  K  :  I  V  Q  K  T  F  I  K  Q  G  I  D  E  G  K  K  A  A  N  Q  V  A  G  E  I  L  S  F  F  T  R  N  N  F  A  V  L  D  R  G  E  T  I  T :   F  E  G  M  M  V  P  S  R  G  Q  A  A  L  L  T  F  C  T  C  V  S  L  G  S  V  A  L  V  L  T  I  T  V  P  D  V  G  N  N  W  F  W  I  T  A  L  S  P  L  A :   G  V  Y  Y  W  T  R  A  S  R  K  E  Q  I  K  V  K  M  I  V  A  D  D  G  S  L  S  E  I  V  V  Q  G  D  D  Q  E  V  E  K  M  R  K  E  L  Q  L  S  E  K  G  M  V  Y  V  K  G  L  L  E  R  *  Y  Y  L  V  F  L  *  D  I  Y  V  *  N  I  L  L  H  N  A  W  S  T  T  F  F  C  C  N  V  E  S  S  K  K  L  *  I  N  C  P  C  I  Y  L  S  E  V  Y  V  Q  *  G  *  I  C  L  L  F  V  C  W  F  L  T  T  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0057O21.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37130" stop="36807"/>
                    <exon start="36728" stop="36598"/>
                    <exon start="35967" stop="35815"/>
                    <exon start="35727" stop="35541"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>792</number_coding_nucleotides>
                  <number_encoded_amino_acids>264</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LAPNSSMAAKLVLSPVSLPWSLQSVQKPHVCLRTKPRSRFAVKAYSDVLFCAASATALLYQENPSSLFSLAAAADSGYSLASYYTSLGLFVISVPGLWSLIKRSVKSKIVQKTFIKQGIDEGKKAANQVAGEILSFFTRNNFAVLDRGETITFEGMMVPSRGQAALLTFCTCVSLGSVALVLTITVPDVGNNWFWITALSPLAGVYYWTRASRKEQIKVKMIVADDGSLSEIVVQGDDQEVEKMRKELQLSEKGMVYVKGLLER*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 111 chains have been computed
$ 
$ memory statistics:
$ 2280 bytes spliced alignments in total
$ 1 spliced alignments have been stored
$ 2280 bytes was the average size of a spliced alignment
$ 5624 bytes predicted gene locations in total
$ 1 predicted gene locations have been stored
$ 5624 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 111 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 10:59:39
-->
