<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 11:01:37"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U570381" ref_strand="-" ref_description="SGN-U570381 Tomato 200607#2 [4 ESTs aligned] ">
      <seq>ggtccaaacacattcagttaagaaaggtgctggacaaaacagcggtgcaactaaaaatggaaaaacagaaaaccaagtggtggcaacaaaaaagagggaaaagaagaaaccccttcctagagaggaaattgcaaaagctagggagcagaagaggaaagctacttagggaagctacacgaaaagccacgatgaagaacaaatgaggtctggtgataagccgaagatattttaccagaggtgacatgagcgaacataaaacaagaaactctggtgattttgtgaaagctcacctcgcgtattattagcacctgccagctagttgtaatatttttgttattggttgatgactttgagatgaagagagctggaggtcgtgtatgattttgctttagaaaacaacttagggttcatggtttgcatgaatatgaatccaaaaattttgtcctatacttttaacctacttgggaatgagcaatgaaaattataaagggaaaagggtagtttgtattcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="-" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="4239" stop="3024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3940" g_stop="3800" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3799" i_stop="3693" i_length="107">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3692" g_stop="3324" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="511" r_length="370" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="-" ref_id="SGN-U570381" ref_strand="-">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U570381" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="3940" e_stop="3800"/>
          <exon e_start="3692" e_stop="3324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCCAAACACATTCAGTTAAGAAAGGTGCTGGACAAAACAGCGGTGCAACTAAAAATGGAAAAACAGAAAACCAAGTGGTGGCAACAAAAAAGAGGGAAAAGAAGAAACCCCTTCCTAGAGAGGAAATTGCAAAAGCTAGGTACTATTTGTAGTTTCACTATCACTAGTTGTTAAACAGTGATGTGCTATTGGAACAGAGTTAATTTCAGATAATATAACCTAGTATTGTCTTCAACATTTTTACAGGGAGGAGAAGAGGAAAGC-ACTTAGGGAAGCTACACGAAAAGCCACGATGAAGAACAAATGAGGTCTGGTGATAAGCCGAAGATATTTTACCAGAGGTGACATGAGCGAACATAAAACAAGAAACTCTGGTGATTTTGTGAAAGCTCACCTCGCGTATTATTAGCACCTGCCAGCTAGTTGTAATATTTTTGTTATTGGTTGATGACTTTGAGATGAAGAGAGCTGGAGGTCGTGTATGATTTTGCTTTAGAAAACAACTTAGGGTTCATGGTTTGCATGAATATGAATCCAAAAATTTTGTCCTATACTTTTAACCTACTTGGGAATGAGCAATGAAAATTATAAAGGGAAAAGGGTAGTTTGTATTCC</genome_strand>
        <mrna_strand>GGTCCAAACACATTCAGTTAAGAAAGGTGCTGGACAAAACAGCGGTGCAACTAAAAATGGAAAAACAGAAAACCAAGTGGTGGCAACAAAAAAGAGGGAAAAGAAGAAACCCCTTCCTAGAGAGGAAATTGCAAAAGCTAG...........................................................................................................GGAGCAGAAGAGGAAAGCTACTTAGGGAAGCTACACGAAAAGCCACGATGAAGAACAAATGAGGTCTGGTGATAAGCCGAAGATATTTTACCAGAGGTGACATGAGCGAACATAAAACAAGAAACTCTGGTGATTTTGTGAAAGCTCACCTCGCGTATTATTAGCACCTGCCAGCTAGTTGTAATATTTTTGTTATTGGTTGATGACTTTGAGATGAAGAGAGCTGGAGGTCGTGTATGATTTTGCTTTAGAAAACAACTTAGGGTTCATGGTTTGCATGAATATGAATCCAAAAATTTTGTCCTATACTTTTAACCTACTTGGGAATGAGCAATGAAAATTATAAAGGGAAAAGGGTAGTTTGTATTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U596812" ref_strand="+" ref_description="SGN-U596812 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>gttttctaaagcataatcatactcgtcctccagctgtcttcatctcaaagtcatcaaccaataccaaaaatagttacaactagctggcaggtgctaataatacgcgaggtgagctttcacaaaatcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="+" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="3138" stop="3865"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3438" g_stop="3565" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="+" ref_id="SGN-U596812" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>128</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U596812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3438" e_stop="3565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTCTAAAGCAAAATCATACACGACCTCCAGCTCTCTTCATCTCAAAGTCATCAACCAATAACAAAAATA-TTACAACTAGCTGGCAGGTGCTAATAATACGCGAGGTGAGCTTTCACAAAATCACC</genome_strand>
        <mrna_strand>GTTTTCTAAAGCATAATCATACTCGTCCTCCAGCTGTCTTCATCTCAAAGTCATCAACCAATACCAAAAATAGTTACAACTAGCTGGCAGGTGCTAATAATACGCGAGGTGAGCTTTCACAAAATCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U582423" ref_strand="+" ref_description="SGN-U582423 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|42568529|ref|NP_200258.2| (e_value=3e-29) zinc finger (B-box type) family protein [Arabidopsis thaliana]; (*ATH) AT5G54470.1 (e_value=2e-31) | Symbol: None | zinc finger (B-box type) family protein, similar to unknown protein (pir::T05755) | chr5:22131660-22132683 REVERSE | Aliases: F24B18.9, F24B18_9; ">
      <seq>gtaggcacttactatatttcttgtaacacatcataatctccaaagacctaaagatttacctaaatttgagatagaaaaattgtaaaaatcttttgttcagtgactctgtatgtgtgataacaattattaacaatgaagaaatgtgagttgtgcagttccatagcaagagtttattgtgaatcagatcaagccagtctttgttgggattgtgatgccagagttcacacagccaatttccttgtagctaaacattcaaggattcttctctgtaattcttgccaatcacttaccccatggactggctctggctctaagcttggtcccactgtttctgtttgccagaaatgttttcacagaaataataatgatggcgcagatcaacatcttaatgatcataatgatacggaagaagaagaagatgatgatgatgatacggaagaagacgaagatgatggaagcagtgatggtgataatcaagttgttcctttatcttcttcaacttcagatcaacctaatcctccctcattgacttcaagctcttctagtagtgaagattccactaacagatttaacagaagaagtataattggattttcacctaacagaacagaggaaaatatccaatcccattattgtggcattacaagacctaaagagaagatagaaaggagttcatggagatggagataatcgggatatttacagctcaaaagctaattctgttatctgatncatgtatgaaataatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="-" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="17609" stop="16065"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17309" g_stop="16674" g_length="636"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="636" r_length="636" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16673" i_stop="16478" i_length="196">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16477" g_stop="16365" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="749" r_length="113" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="-" ref_id="SGN-U582423" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U582423" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17309" e_stop="16674"/>
          <exon e_start="16477" e_stop="16365"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGGCACTTACTATATTTCTTGTAACACATCATAATCTCCAAAGACCTAAAGATTTACCTAAATTTGAGATAGAAAAATTGTAAAAATCTTTTGTTCAGTGACTCTGTATGTGTGATAACAATTATTAACAATGAAGAAATGTGAGTTGTGCAGTTCCATAGCAAGAGTTTATTGTGAATCAGATCAAGCCAGTCTTTGTTGGGATTGTGATGCCAGAGTTCACACAGCCAATTTCCTTGTAGCTAAACATTCAAGGATTCTTCTCTGTAATTCTTGCCAATCACTTACCCCATGGACTGGCTCTGGCTCTAAGCTTGGTCCCACTGTTTCTGTTTGCCAGAAATGTTTTCACAGAAATAATAATGATGGCGCAGATCAACATCTTAATGATCATAATGATACGGAAGAAGAAGAAGATGATGATGATGATACGGAAGAAGACGAAGATGATGGAAGCAGTGATGGTGATAATCAAGTTGTTCCTTTATCTTCTTCAACTTCAGATCAACCTAATCCTCCCTCATTGACTTCAAGCTCTTCTAGTAGTGAAGATTCCACTAACAGATTTAACAGAAGAAGTATAATTGGATTTTCACCTAACAGAACAGAGGAAAATATCCAATCCCATTATTGTGTAAGTCTTTAATTCCCTACCTGTTATCAATCACTCCCTCCGTTTCAATATTTGACATTTCAATCTCATAATCGTTGAAAAACGGAACGATTATTTTTTTAAACAGACTAAAAGAAAAGTAGGTCAAACAGAGAGGTAACACATTCCAATATTTCTACAGCTGAATGTGTGTTCTGTTCTCTTTTTGTATTTTCAGGGCATTACAAGACCTAAAGAGAAGATAGAAAGGAGTTCATGGAGATGGAGATAATCGGGATATTTACAGCTCAAAAGCTAATTCTGTTATCTGATCAATGTATGAATAAATCT</genome_strand>
        <mrna_strand>GTAGGCACTTACTATATTTCTTGTAACACATCATAATCTCCAAAGACCTAAAGATTTACCTAAATTTGAGATAGAAAAATTGTAAAAATCTTTTGTTCAGTGACTCTGTATGTGTGATAACAATTATTAACAATGAAGAAATGTGAGTTGTGCAGTTCCATAGCAAGAGTTTATTGTGAATCAGATCAAGCCAGTCTTTGTTGGGATTGTGATGCCAGAGTTCACACAGCCAATTTCCTTGTAGCTAAACATTCAAGGATTCTTCTCTGTAATTCTTGCCAATCACTTACCCCATGGACTGGCTCTGGCTCTAAGCTTGGTCCCACTGTTTCTGTTTGCCAGAAATGTTTTCACAGAAATAATAATGATGGCGCAGATCAACATCTTAATGATCATAATGATACGGAAGAAGAAGAAGATGATGATGATGATACGGAAGAAGACGAAGATGATGGAAGCAGTGATGGTGATAATCAAGTTGTTCCTTTATCTTCTTCAACTTCAGATCAACCTAATCCTCCCTCATTGACTTCAAGCTCTTCTAGTAGTGAAGATTCCACTAACAGATTTAACAGAAGAAGTATAATTGGATTTTCACCTAACAGAACAGAGGAAAATATCCAATCCCATTATTGT....................................................................................................................................................................................................GGCATTACAAGACCTAAAGAGAAGATAGAAAGGAGTTCATGGAGATGGAGATAATCGGGATATTTACAGCTCAAAAGCTAATTCTGTTATCTGATNCATGTATGAAATAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U599304" ref_strand="+" ref_description="SGN-U599304 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|83728524|gb|ABC41950.1| (e_value=2e-49) FAD-linked; (*ATH) AT4G20860.1 (e_value=2e-49)  Symbol: None | FAD-binding domain-containing protein, simlar to SP:P30986 reticuline oxidase precursor (Berberine-bridge-forming enzyme) (BBE) (Tetrahydroprotoberberine synthase) (Eschscholzia californica); contains PF01565 FAD binding domain | chr4... ; (*SWP) sp|Q9SVG4|RETOL_ARATH (e_value=4e-27) Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830; ">
      <seq>aggaggtggaggagcaagttttggtgttattttagcatggaaactcaaacttgttcctgtcccggagaaagttactgttttcaatgtttacaagaggttagagggtaaccacaatctcctcacaaaatgggaaagcaccgcgcatcaattacctgataaattacttatcagagtaattatacaaaatgatggaacagagaatgacaagtacgttgaagtaatctttcaatcactatacctcggacctgttgatgagttaattccattgctcaaagaaaaattccctgaatttgatttggacaaaaaggattgcttccaagagcctgttgtggattgtagtaacaggccttgtattaagaaagaatgtcgcgaatcttcctggattggatcagtcctgtatttctatggtaggagaacaaatgaatcacttgaagttctgctagaaaagagtattccaacacagaagaattatttcaaagccacatctgattttgtgaagactccagttccggaaagtggttgggaaatggttgaaaaaatgtttttggaagaagaaagacctcagatgataatggagccattangtgggatattagatgaaatatcagaatctgaaattccattccctcatagaaaggggaatttgtataatattcagtactttggtgaactggggcgataacagcgagagtatatcaagccagaaagatagatggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="-" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="23520" stop="22203"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23220" g_stop="22503" g_length="718"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="719" r_length="719" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="-" ref_id="SGN-U599304" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U599304" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23220" e_stop="22503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGGTGGAGGAGCAAGTTTTGGTGTTATTTTAGCATGGAAACTCAAACTTGTTCCTGTCCCGGAGAAAGTTACTGTTTTCAATGTTTACAAGAGGTTAGAGGGTAACCACAATCTCCTCACAAAATGGGAAAGCACCGCGCATCAATTACCTGATAAATTACTTATCAGAGTAATTATACAAAATGATGGAACAGAGAATGACAAGTACGTTGAAGTAATCTTTCAATCACTATACCTCGGACCTGTTGATGAGTTAATTCCATTGCTCAAAGAAAAATTCCCTGAATTTGATTTGGACAAAAAGGATTGCTTCCAAGAGCCTGTTGTGGATTGTAGTAACAGGCCTTGTATTAAGAAAGAATGTCGCGAATCTTCCTGGATTGGATCAGTCCTGTATTTCTATGGTAGGAGAACAAATGAATCACTTGAAGTTCTGCTAGAAAAGAGTATTCCAACACAGAAGAATTATTTCAAAGCCACATCTGATTTTGTGAAGACTCCAGTTCCGGAAAGTGGTTGGGAAATGGTTGAAAAAATGTTTTTGGAAGAAGAAAGACCTCAGATGATAATGGAGCCATTAGGTGGGATATTAGATGAAATATCAGAATCTGAAATTCCATTCCCTCATAGAAAGGGGAATTTGTATAATATTCAGTAC-TTGGTGAACTGGGGCGATAACAGCGAGAGTATATCAAGCCAGAAGATAAGATGGATG</genome_strand>
        <mrna_strand>AGGAGGTGGAGGAGCAAGTTTTGGTGTTATTTTAGCATGGAAACTCAAACTTGTTCCTGTCCCGGAGAAAGTTACTGTTTTCAATGTTTACAAGAGGTTAGAGGGTAACCACAATCTCCTCACAAAATGGGAAAGCACCGCGCATCAATTACCTGATAAATTACTTATCAGAGTAATTATACAAAATGATGGAACAGAGAATGACAAGTACGTTGAAGTAATCTTTCAATCACTATACCTCGGACCTGTTGATGAGTTAATTCCATTGCTCAAAGAAAAATTCCCTGAATTTGATTTGGACAAAAAGGATTGCTTCCAAGAGCCTGTTGTGGATTGTAGTAACAGGCCTTGTATTAAGAAAGAATGTCGCGAATCTTCCTGGATTGGATCAGTCCTGTATTTCTATGGTAGGAGAACAAATGAATCACTTGAAGTTCTGCTAGAAAAGAGTATTCCAACACAGAAGAATTATTTCAAAGCCACATCTGATTTTGTGAAGACTCCAGTTCCGGAAAGTGGTTGGGAAATGGTTGAAAAAATGTTTTTGGAAGAAGAAAGACCTCAGATGATAATGGAGCCATTANGTGGGATATTAGATGAAATATCAGAATCTGAAATTCCATTCCCTCATAGAAAGGGGAATTTGTATAATATTCAGTACTTTGGTGAACTGGGGCGATAACAGCGAGAGTATATCAAGCCAGAAAGATAGATGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U569685" ref_strand="+" ref_description="SGN-U569685 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157351649|emb|CAO42608.1| (e_value=9e-48) unnamed; (*ATH) AT4G20840.1 (e_value=3e-45)  Symbol: None | FAD-binding domain-containing protein, similar to SP:P30986 reticuline oxidase precursor (Berberine-bridge-forming enzyme) (BBE) (Tetrahydroprotoberberine synthase) (Eschscholzia californica); contains PF01565 FAD binding domain | chr... ; (*SWP) sp|Q9SVG4|RETOL_ARATH (e_value=9e-42) Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830; ">
      <seq>caggcaatttctattcctcaaaagaaaaagaaaaattatgggtaaccttcaaatcctctctcttttaatcttttccttctttttgtcaaaatgttactccaaacaagaagattttgttcagtgtctttctaaatactctaaaaccaacgttacacacaacatttacaccccaaaatctccaacctattcatctatcttagaatatgctcaaaaaaatcctagatggatgaattcttcacatcccattttcattgtttcccctacaaaagaatcacaaatcaagccggttattcgctgtgcaaaaaaactagggttgcaaatgaaaataaaaagtggtggccatgactatgaaggcatatcttttcgctctaaaaccccttttgttatgcttgatttaagcaatcttaacaaaatcaagattgatttaaatgaaggaacagtttgggttcaagcaggggcaaccctcggccagctttactatgcaattgctaaaaaaagtaatgtgcatggttttgctggaggtgtttgtttcagtattggcactggagggattattagtggtggagggttaggtactttgatgagaaaattcgggcttgcagctgataatggtgtagatgctcgcgtaatagatgtaaatggaaaaattcttaataagaacaaaatgaatgaagatctgttttgggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="-" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="24212" stop="22926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23913" g_stop="23226" g_length="688"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="688" r_length="688" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="-" ref_id="SGN-U569685" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U569685" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23913" e_stop="23226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGCAATTTCTATTCCTCAAAAGAAAAAGAAAAATTATGGGTAACCTTCAAATCCTCTCTCTTTTAATCTTTTCCTTCTTTTTGTCAAAATGTTACTCCAAACAAGAAGATTTTGTTCAGTGTCTTTCTAAATACTCTAAAACCAACGTTACACACAACATTTACACCCCAAAATCTCCAACCTATTCATCTATCTTAGAATATGCTCAAAAAAATCCTAGATGGATGAATTCTTCACATCCCATTTTCATTGTTTCCCCTACAAAAGAATCACAAATCAAGCCGGTTATTCGCTGTGCAAAAAAACTAGGGTTGCAAATGAAAATAAAAAGTGGTGGCCATGACTATGAAGGCATATCTTTTCGCTCTAAAACCCCTTTTGTTATGCTTGATTTAAGCAATCTTAACAAAATCAAGATTGATTTAAATGAAGGAACAGTTTGGGTTCAAGCAGGGGCAACCCTCGGCCAGCTTTACTATGCAATTGCTAAAAAAAGTAATGTGCATGGTTTTGCTGGAGGTGTTTGTTTCAGTATTGGCACTGGAGGGATTATTAGTGGTGGAGGGTTAGGTACTTTGATGAGAAAATTCGGGCTTGCAGCTGATAATGTTGTAGATGCTCGCGTAATAGATGTAAATGGAAAAATTCTTAATAAGAACAAAATGAATGAAGATCTGTTTTGGGCA</genome_strand>
        <mrna_strand>CAGGCAATTTCTATTCCTCAAAAGAAAAAGAAAAATTATGGGTAACCTTCAAATCCTCTCTCTTTTAATCTTTTCCTTCTTTTTGTCAAAATGTTACTCCAAACAAGAAGATTTTGTTCAGTGTCTTTCTAAATACTCTAAAACCAACGTTACACACAACATTTACACCCCAAAATCTCCAACCTATTCATCTATCTTAGAATATGCTCAAAAAAATCCTAGATGGATGAATTCTTCACATCCCATTTTCATTGTTTCCCCTACAAAAGAATCACAAATCAAGCCGGTTATTCGCTGTGCAAAAAAACTAGGGTTGCAAATGAAAATAAAAAGTGGTGGCCATGACTATGAAGGCATATCTTTTCGCTCTAAAACCCCTTTTGTTATGCTTGATTTAAGCAATCTTAACAAAATCAAGATTGATTTAAATGAAGGAACAGTTTGGGTTCAAGCAGGGGCAACCCTCGGCCAGCTTTACTATGCAATTGCTAAAAAAAGTAATGTGCATGGTTTTGCTGGAGGTGTTTGTTTCAGTATTGGCACTGGAGGGATTATTAGTGGTGGAGGGTTAGGTACTTTGATGAGAAAATTCGGGCTTGCAGCTGATAATGGTGTAGATGCTCGCGTAATAGATGTAAATGGAAAAATTCTTAATAAGAACAAAATGAATGAAGATCTGTTTTGGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U573887" ref_strand="+" ref_description="SGN-U573887 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157351628|emb|CAO42587.1| (e_value=1e-61) unnamed; (*ATH) AT4G20860.1 (e_value=4e-59)  Symbol: None | FAD-binding domain-containing protein, simlar to SP:P30986 reticuline oxidase precursor (Berberine-bridge-forming enzyme) (BBE) (Tetrahydroprotoberberine synthase) (Eschscholzia californica); contains PF01565 FAD binding domain | chr4... ; (*SWP) sp|Q9SVG4|RETOL_ARATH (e_value=4e-51) Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830; ">
      <seq>ggatccggcagggctgcaggccaaatacaacactacacaaaacatttacaccccaaattctccaacttattcatctatcctggaatatgcccaaaaaaaaccaagatggttgaattcttcacatcccaatttcattgcttcccctaaagaagaatcagaaatcaggcctatcattctttgtagtaaaaaagtaggcctacaaatcaagatcaaaagcggtggtcacgactatgaaggcatatcttatcgctctaaatcccggtttgttatgcttgatttaagcaatcttaacaaaatcaagattgatttaaatgatgaaacagtttgggttcaaacaggggcgacccttggccaactttactatgcaattgccaagaaaagtaaagttcatgcatttccaagtggtgtctgtttcagtattggcactggtggaatcatcagtggtggtgggattggcgcattgatgaggaaattcggcctgtcagctgataacgttgtagatgcacgtgtgatggatgtgaatggaaaaattcttgacaggaagatgaatgaagatttgttttgggcgataagaggaggcggaggagcaagtttcggtgttattctagcatggaaactaaaattggttcgtattccagtgaagcttactgttttcacgattcgtacagaagttagagggtaacctaaatctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="+" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="32208" stop="33479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32507" g_stop="33179" g_length="673"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="693" r_length="674" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="+" ref_id="SGN-U573887" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U573887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32507" e_stop="33179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAAAACAACACTACACAAAACATTTACACCCCAAATTCTCCAACTTATTCATCTATCCTGGAATATGCCCAAAAAAAACCAAGATGGTTGAATTCTTCACATCCCAATTTCATTGCTTCCCCTAAAGAAGAATCAGAAATCAGGCCTATCATTCTTTGTAGTAAAAAAGTAGGCCTACAAATCAAGATCAAAAGCGGTGGTCACGACTATGAAGGCATATCTTATCGCTCTAAATCCCGGTTTGTTATGCTTGATTTAAGCAATCTTAACAAAATCAAGATTGATTTAAATGATGAAACAGTTTGGGTTCAAACAGGGGCGACCCTTGGCCAACTTTACTATGCAATTGCCAAGAAAAGTAAAGTTCATGCATTTCCAAGTGGTGTCTGTTTCAGTATTGGCACTGGTGGAATCATCAGTGGTGGTGGGATTGGCGCATTGATGAGGAAATTCGGCCTGTCAGCTGATAACGTTGTAGATGCACGTGTGATGGATGTGAATGGAAAAATTCTTGACAGGAAGATGAATGAAGATTTGTTTTGGGCGATAAGAGGAGGCGGAGGAGCAAGTTTCGGTGTTATTCTAGCATGGAAACTAAAATTGGTTCGTATTCCAGTGAAGCTTACTGTTTTCACGATTCGTA-GGAAGTTAGAGGGTAACCTAAATCTCC</genome_strand>
        <mrna_strand>GCCAAATACAACACTACACAAAACATTTACACCCCAAATTCTCCAACTTATTCATCTATCCTGGAATATGCCCAAAAAAAACCAAGATGGTTGAATTCTTCACATCCCAATTTCATTGCTTCCCCTAAAGAAGAATCAGAAATCAGGCCTATCATTCTTTGTAGTAAAAAAGTAGGCCTACAAATCAAGATCAAAAGCGGTGGTCACGACTATGAAGGCATATCTTATCGCTCTAAATCCCGGTTTGTTATGCTTGATTTAAGCAATCTTAACAAAATCAAGATTGATTTAAATGATGAAACAGTTTGGGTTCAAACAGGGGCGACCCTTGGCCAACTTTACTATGCAATTGCCAAGAAAAGTAAAGTTCATGCATTTCCAAGTGGTGTCTGTTTCAGTATTGGCACTGGTGGAATCATCAGTGGTGGTGGGATTGGCGCATTGATGAGGAAATTCGGCCTGTCAGCTGATAACGTTGTAGATGCACGTGTGATGGATGTGAATGGAAAAATTCTTGACAGGAAGATGAATGAAGATTTGTTTTGGGCGATAAGAGGAGGCGGAGGAGCAAGTTTCGGTGTTATTCTAGCATGGAAACTAAAATTGGTTCGTATTCCAGTGAAGCTTACTGTTTTCACGATTCGTACAGAAGTTAGAGGGTAACCTAAATCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U598539" ref_strand="+" ref_description="SGN-U598539 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157351628|emb|CAO42587.1| (e_value=5e-56) unnamed; (*ATH) AT4G20860.1 (e_value=5e-55)  Symbol: None | FAD-binding domain-containing protein, simlar to SP:P30986 reticuline oxidase precursor (Berberine-bridge-forming enzyme) (BBE) (Tetrahydroprotoberberine synthase) (Eschscholzia californica); contains PF01565 FAD binding domain | chr4... ; (*SWP) sp|Q9SVG4|RETOL_ARATH (e_value=2e-35) Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830; ">
      <seq>tttttatttaaactgaaacttctttgtatctcatattacaaagtgtgacaagcactaactggcctgtctaataatatgagacatgtgagtaaaatgactcttcaatttgtagaataaggtggaatactttgttcatttctgaagaaattgttgggatccaccttactcttaacttgagccaatctctcaaagttgccactataatacttttgaccccatattttggccttggaatagctgtagtcctctgaatttgtcccaaaatcaaggtccctgtagttcagataagcagttcttggagaatttgaaacatatggctccatttcctggtaaagtttcctcatccatcctatcttctggcttgatatagtctcactgttatcgctccagtagttcaagtactgaatattgtacaaattcccttttctatgagggaatggaatttcggattctgatatttcatcaaatttcgcacccattggctcaaagatcatctggggactttcttcttccaagaacagtctttctatcatttcccaaccactttctggaactggagtcttcacaaaatcagacgtccctttgtcgtaacttttctttgttggaatactcttttctagcaatgtttcaggggcatcagttagttttctgaaatagaaatataagattgactgaatccaggaaacttcatggcattctttctccgcaccagtactagtagtcttttgaaagcaatcttttcgctccaattgaactcagggaagtactgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="-" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="34418" stop="33045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34118" g_stop="33345" g_length="774"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="771" r_length="771" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="-" ref_id="SGN-U598539" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>774</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U598539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34118" e_stop="33345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTATTTAAAACTGAAACTTCTTTGTAATATCATATTACAATGTGTGACAAGCACTAACTGGCCTGTCTAATAATATGAGACATGTGAGTAAAATGACTCTTCAATTTGTAGAATAAGGTGGAATACTTTGTTCATTTCTGAAGAAATTGTTGGGATCCACCTTACTCTTAACTTGAGCCAATCTCTCAAAGTTGCCACTATAATACTTTTGACCCCATATTTTGGCCTTGGAATAGCTGTAGTCCTCTGAATTTGTCCCAAAATCAAGGTCCCTGTAGTTCAGATAAGCAGTTCTTGGAGAATTTGAAACATATGGCTCCATTTCCTGGTAAAGTTTCCTCATCCATCCTATCTTCTGGCTTGATATAGTCTCACTGTTATCGCTCCAGTAGTTCAAGTACTGAATATTGTACAAATTCCCTTTTCTATGAGGGAATGGAATTTCGGATTCTGATATTTCATCAAATTTCGCACCCATTGGCTCAAAGATCATCTGGGGACTTTCTTCTTCCAAGAACAGTCTTTCTATCATTTCCCAACCACTTTCTGGAACTGGAGTCTTCACAAAATCAGACGTCCCTTTGTCGTAACTTTTCTTTGTTGGAATACTCTTTTCTAGCAATGTTTCAGGGGCATCAGTTAGTTTTCTGAAATAGAAATATAAGATTGACTGAATCCAGGAAACTTCATGGCATTCTTTCTCCGCACCAGTACTAGTAGTCTTTTGAAAGCAATCTTTTCGCTCCAAATTGAACTCAGGGAAGTACTGTT</genome_strand>
        <mrna_strand>TTTTTATTT-AAACTGAAACTTCTTTGT-ATCTCATATTACAAAGTGTGACAAGCACTAACTGGCCTGTCTAATAATATGAGACATGTGAGTAAAATGACTCTTCAATTTGTAGAATAAGGTGGAATACTTTGTTCATTTCTGAAGAAATTGTTGGGATCCACCTTACTCTTAACTTGAGCCAATCTCTCAAAGTTGCCACTATAATACTTTTGACCCCATATTTTGGCCTTGGAATAGCTGTAGTCCTCTGAATTTGTCCCAAAATCAAGGTCCCTGTAGTTCAGATAAGCAGTTCTTGGAGAATTTGAAACATATGGCTCCATTTCCTGGTAAAGTTTCCTCATCCATCCTATCTTCTGGCTTGATATAGTCTCACTGTTATCGCTCCAGTAGTTCAAGTACTGAATATTGTACAAATTCCCTTTTCTATGAGGGAATGGAATTTCGGATTCTGATATTTCATCAAATTTCGCACCCATTGGCTCAAAGATCATCTGGGGACTTTCTTCTTCCAAGAACAGTCTTTCTATCATTTCCCAACCACTTTCTGGAACTGGAGTCTTCACAAAATCAGACGTCCCTTTGTCGTAACTTTTCTTTGTTGGAATACTCTTTTCTAGCAATGTTTCAGGGGCATCAGTTAGTTTTCTGAAATAGAAATATAAGATTGACTGAATCCAGGAAACTTCATGGCATTCTTTCTCCGCACCAGTACTAGTAGTCTTTTGAAAGCAATCTTTTCGCTCC-AATTGAACTCAGGGAAGTACTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U565973" ref_strand="+" ref_description="SGN-U565973 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157351552|emb|CAO41777.1| (e_value=9e-148) unnamed; (*ATH) AT1G32910.1 (e_value=3e-131)  Symbol: None | transferase family protein, low similarity to anthranilate N-hydroxycinnamoyl/benzoyltransferase Dianthus caryophyllus GI:2239091, benzylalcohol acetyltransferase Clarkia breweri GI:6166336; contains Pfam profile PF02458 transferase f... ; (*SWP) sp|Q9M6E2|DBAT_TAXCU (e_value=3e-11) 10-deacetylbaccatin III 10-O-acetyltransferase OS=Taxus cuspidata; ">
      <seq>tgggaaaacacaacattacaaacatacaatccattgatacaaagattcaaaagtctctccagtattctttccctcaacaaaaagcaaaaaatatatcttagaaatattaatagatgggtgccaaaaaggacttcaatgtgaagttgataaaaacagaggtggtagcagcaatgttgccaatgcaagagcattggctatcacagtccaatcttgatttgcttttacctccagtggatgttggagtattcttatgttatcaaaatcccattatttctggaatattgtcaaaaaattggtcatttgattccatggtcaatgttcttaaggtgtctttgggtgagactttggtttcatactatgcatttgctggagagttaattcaaaaccttgctggagagcccgaaattctgtgtaacaatgctggagtggatttcatagaatcttgggctgatgtagagcttaaagagatcaactttcataatccggatgaaagcatagaaggcaagcttgtaccaaagaagaagcatggtgtactagctgttcaggttacagaactaaaatgtggaggagtagtggtgggttgtacatttgatcatagagttgctgatgcttactctttcaacatgtttcttgtatcatgggctgagttagctcagtccaaaccactctctcagctaccatctttcagacgatcttttcttactccgcggtgtccctctttctatgatcctataattgataccatgtacttacctatctcagccctgaaacaggaaaccgcaaatattgatcatgatgctgatgaaattataagtagaatttactatgttaaaggccgaagaaatcaggcgcctccaatcactagccaattgtaacaacacaacgtttactaaacttgaagcattcagcgctttcctatggaaaactatagccagtgatactaataacaagttcaggcttggaattgtggttaatggaagaagtagattaagcaacggagatgaagaacaagcgaagatactagaagggtattttgggaatgttctttccatcccatttggggaaaaaaaagttgaggaactaaaagagaaatcattgagttgggttgcaagtgcagtgcatgagtttcttgaacatgttgtgacaagagaacattttcttgggttaataaattgggttgagaatcattgtccggagccagctctagcaagaatttatgccacgaatgaagatacacctgcgctggtggtgtcatcggggcaacaatttccggtgaggaagattgagtttggatggggagaggcggtgtttggttcgtaccattttccatgggaagggaaatcaggatatgtgatgccaatgccaagtccaaaaggaaatggagattggattgtttacatgcatatgttgaagggacaaattgatttgattgaggctattgcgtcaaatgtgttcaagcccctcactgcagattatctcaatttaaagtaatcaatcaatgtttgtgtatacatatgtactcggagatctgaaggggagctttggagcaatgaaaacgttgtttgtttccgtttgactcatagattgtgggttcaagtatagaaacaaattacaatacttgtgtttatacaacacgacctactaacataggatgttttctgcataaaaactattttaatatatatactaagcttgtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="-" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="44492" stop="41574"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44194" g_stop="43650" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43649" i_stop="43027" i_length="623">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43026" g_stop="41874" g_length="1153"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="1699" r_length="1154" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="-" ref_id="SGN-U565973" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>1698</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U565973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44194" e_stop="43650"/>
          <exon e_start="43026" e_stop="41874"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGAAAACACAACATTACAAACATACAATCCATTGATACAAAGATTCAAAAGTCTCTCCAGTATTCTTTCCCTCAACAAAAAGCAAAAAATATATCTTAGAAATATTAATAGATGGGTGCCAAAAAGGACTTCAATGTGAAGTTGATAAAAACAGAGGTGGTAGCAGCAATGTTGCCAATGCAAGAGCATTGGCTATCACAGTCCAATCTTGATTTGCTTTTACCTCCAGTGGATGTTGGAGTATTCTTATGTTATCAAAATCCCATTATTTCTGGAATATTGTCAAAAAATTGGTCATTTGATTCCATGGTCAATGTTCTTAAGGTGTCTTTGGGTGAGACTTTGGTTTCATACTATGCATTTGCTGGAGAGTTAATTCAAAACCTTGCTGGAGAGCCCGAAATTCTGTGTAACAATGCTGGAGTGGATTTCATAGAATCTTGGGCTGATGTAGAGCTTAAAGAGATCAACTTTCATAATCCGGATGAAAGCATAGAAGGCAAGCTTGTACCAAAGAAGAAGCATGGTGTACTAGCTGTTCAGGTACTATTCATCATTCCTCAATCACTCTAGATATTCTTCGAATCCAGCTCGCGTCATCTCATTAACCATCTATCTGAGACTTTTGTTATTCTTTAACACCCCATCTCTGCCCAGTTGAATTTTGATTTTAGGTTCCAACATTGGGTGGGATGGAATTGCTCTGATACTATGTTAAATTAGCTCAAAAAGAAGGATTGTCCATGCGATTATATCTATTTTGAGAAACTAGGATTATTATTTTCCATGCCCACACGAGAAGCATATATACGAGTGCCTTTGTGCCGCTTGTACAAACCAGAGAAAACACCGGCGAGACCAGGGTTCAAATCCAGCTAGAGCCCTATTTGAGTCATTAGGACCAATCAAATACAAATTATTCGTTACTGTTATTAAAAGTTGCCTAAATTAAGTTAATATTGATAGATGCATCTTAAGTTTTCAAATGCTGGATTTTCCTCTTGTCTTCATGGGTTCTGTGAAGGACTAGACCACGTCAAGCCCATTTACCCTTTTTCTCCTTTTGCAACTCAACTTGAACTTGTTGTTTTGCATGCTGCTATTCCTATGAACTCTGCTCCTTACTAAAGTTTTTTGAGAATTGAAAGTTTAATAATCCATTGCAGGTTACAGAACTAAAATGTGGAGGAGTAGTGGTGGGTTGTACATTTGATCATAGAGTTGCTGATGCTTACTCTTTCAACATGTTTCTTGTATCATGGGCTGAGTTAGCTCAGTCCAAACCACTCTCTCAGCTACCATCTTTCAGACGATCTTTTCTTACTCCGCGGTGTCCCTCTTTCTATGATCCTATAATTGATACCATGTACTTACCTATCTCAGCCCTGAAACAGGAAACCGCAAATATTGATCATGATGCTGATGAAATTATAAGTAGAATTTACTATGTT-AAGGCCGAAGAAATCAGGCGCCTCCAATCACTAGCCAATTGTAACAACACAACGTTTACTAAACTTGAAGCATTCAGCGCTTTCCTATGGAAAACGATAGCCAGTGATACTAATAACAAGTTCAGGCTTGGAATTGTGGTTAATGGAAGAAGTAGATTAAGCAACGGAGATGAAGAACAAGCCAAGATACTAGAAGGGTATTTTGGGAATGTTCTTTCCATCCCATTTGGGGAAAAAAAAGTTGAGGAACTAAAAGAGAAATCATTGAGTTGGGTTGCAAGTGCAGTGCATGAGTTTCTTGAACATGTTGTGACAAGAGAACATTTTCTTGGGTTAATAAATTGGGTTGAGAATCATCGTCCGGAGCCAGCTCTAGCAAGAATTTATGCCACGAATGAAGATACACCTGCGCTGGTGGTGTCATCGGGGCAACAATTTCCGGTGAGGAAGATTGAGTTTGGATGGGGAGAGGCGGTGTTTGGTTCGTACCATTTTCCATGGGAAGGGAAATCAGGATATGTGATGCCAATGCCAAGTCCAAAAGGAAATGGAGATTGGATTGTTTACATGCATATGTTGAAGGGACAAATTGATTTGATTGAGGCTATTGCGTCAAATGTGTTCAAGCCCCTCACTGCAGATTATCTCAGTTTAAAGTAATCAATCAATGTTTGTGTATACATATGTACTCGGAGATCAGAAGGGGAGCTTTGGAGCAATGAAAACGTTGTTTGTTTCCGTTTGACTCATAGGTTGTGGGTTCAAGTATAGAAACAAATTACAATACTTGTGTTTATACAACACGACCTACTAACATAGGATGTTTTCTGCATAAAAACTACTTTAATATATATACTAAGCTTGTTTG</genome_strand>
        <mrna_strand>TGGGAAAACACAACATTACAAACATACAATCCATTGATACAAAGATTCAAAAGTCTCTCCAGTATTCTTTCCCTCAACAAAAAGCAAAAAATATATCTTAGAAATATTAATAGATGGGTGCCAAAAAGGACTTCAATGTGAAGTTGATAAAAACAGAGGTGGTAGCAGCAATGTTGCCAATGCAAGAGCATTGGCTATCACAGTCCAATCTTGATTTGCTTTTACCTCCAGTGGATGTTGGAGTATTCTTATGTTATCAAAATCCCATTATTTCTGGAATATTGTCAAAAAATTGGTCATTTGATTCCATGGTCAATGTTCTTAAGGTGTCTTTGGGTGAGACTTTGGTTTCATACTATGCATTTGCTGGAGAGTTAATTCAAAACCTTGCTGGAGAGCCCGAAATTCTGTGTAACAATGCTGGAGTGGATTTCATAGAATCTTGGGCTGATGTAGAGCTTAAAGAGATCAACTTTCATAATCCGGATGAAAGCATAGAAGGCAAGCTTGTACCAAAGAAGAAGCATGGTGTACTAGCTGTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACAGAACTAAAATGTGGAGGAGTAGTGGTGGGTTGTACATTTGATCATAGAGTTGCTGATGCTTACTCTTTCAACATGTTTCTTGTATCATGGGCTGAGTTAGCTCAGTCCAAACCACTCTCTCAGCTACCATCTTTCAGACGATCTTTTCTTACTCCGCGGTGTCCCTCTTTCTATGATCCTATAATTGATACCATGTACTTACCTATCTCAGCCCTGAAACAGGAAACCGCAAATATTGATCATGATGCTGATGAAATTATAAGTAGAATTTACTATGTTAAAGGCCGAAGAAATCAGGCGCCTCCAATCACTAGCCAATTGTAACAACACAACGTTTACTAAACTTGAAGCATTCAGCGCTTTCCTATGGAAAACTATAGCCAGTGATACTAATAACAAGTTCAGGCTTGGAATTGTGGTTAATGGAAGAAGTAGATTAAGCAACGGAGATGAAGAACAAGCGAAGATACTAGAAGGGTATTTTGGGAATGTTCTTTCCATCCCATTTGGGGAAAAAAAAGTTGAGGAACTAAAAGAGAAATCATTGAGTTGGGTTGCAAGTGCAGTGCATGAGTTTCTTGAACATGTTGTGACAAGAGAACATTTTCTTGGGTTAATAAATTGGGTTGAGAATCATTGTCCGGAGCCAGCTCTAGCAAGAATTTATGCCACGAATGAAGATACACCTGCGCTGGTGGTGTCATCGGGGCAACAATTTCCGGTGAGGAAGATTGAGTTTGGATGGGGAGAGGCGGTGTTTGGTTCGTACCATTTTCCATGGGAAGGGAAATCAGGATATGTGATGCCAATGCCAAGTCCAAAAGGAAATGGAGATTGGATTGTTTACATGCATATGTTGAAGGGACAAATTGATTTGATTGAGGCTATTGCGTCAAATGTGTTCAAGCCCCTCACTGCAGATTATCTCAATTTAAAGTAATCAATCAATGTTTGTGTATACATATGTACTCGGAGATCTGAAGGGGAGCTTTGGAGCAATGAAAACGTTGTTTGTTTCCGTTTGACTCATAGATTGTGGGTTCAAGTATAGAAACAAATTACAATACTTGTGTTTATACAACACGACCTACTAACATAGGATGTTTTCTGCATAAAAACTATTTTAATATATATACTAAGCTTGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U581155" ref_strand="+" ref_description="SGN-U581155 Tomato 200607#2 [33 ESTs aligned] (*GB) gi|129807|sp|P15003|PER1_SOLLC (e_value=0) RecName:; (*ATH) AT5G05340.1 (e_value=5e-60) | Symbol: None | peroxidase, putative, similar to peroxidase (Nicotiana tabacum) gi:5381253:dbj:BAA82306; similar to Peroxidase P7 (Brassica rapa (Turnip)) SWISS-PROT:P00434 | chr5:1578952-1580876 REVERSE | Aliases: K18I23.14, K18I23_14; (*SWP) sp|P15003|PER1_SOLLC (e_value=0) Suberization-associated anionic peroxidase 1 OS=Solanum lycopersicum GN=TAP1; ">
      <seq>cggccgattcccagggggatccgatgatccctatcgaaagcctttaatttgtttcctcgatagacatttaaattaagtgatgggttttcgtttgagtcatttgagtcttgcattgagttttgtggcacttgcacttgcaggtgttgctatttatagaaatacttatgaagccatcatcatgaaaaacggttcactcctcaaaaatgtttctccagatttcgattcgttggaatcaggcgtagccagtattttaaccttaaataataataagaagagaaattcagacaagtacttgagacagcaactaactccggaggcatgcgttttctcagctgtacgagcagttgtggacagtgctattgatgcagaaactcgcatgggagcttctctcattcgtctccactttcatgactgcttcgttgatggttgtgatggaggtattctgctagatgatattaatggaacatttacaggggaacaaaactcaccacccaacgccaactcagccagaggttatgaagtaatagcacaagctaaacaaagtgtcataaacacatgccccaacgtatctgtatcttgtgccgacatattagctattgctgctcgtgattctgttgctaaattaggaggacaaacttatagcgttgcattagggagaagcgatgctagaactgccaactttagtggtgctataaatcaacttccagctccattcgacaacctaacagtccaaatacagaaattcagcgacaaaaatttcaccctccgtgaaatggttgcactagctggtgcacacacggtaggtttcgccaggtgttccacagtttgcaccagcggtaacgttaatcctgccgcacaactccaatgcaactgctccgccacgctaactgattctgatttgcaacaattggatactactcctactatgttcgacaaagtttactacgataacttaaacagcaaccaaggcataatgttttcagatcaagttttgaccggggatgctacaactgctggttttgtaacggattatagcaacgatgtgaacgttttccttggagattttgctgctgccatgatcaagatgggagacttgcccccctccgccggcgctcaattggaaattcgtgatgtttgtagcagggttaatcccacttcagtggcttctatgtgaaaaattcggaaattttaattaacttatctcacgactagttgcttcatgttttcttcaaaataaaagaatcactggctccagaatgtggtttggttttggtatttgttttgtaatccatcctattttatatgaatattgttttccttgtgtgctaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="-" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="62581" stop="59532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62278" g_stop="61881" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="424" r_length="398" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61880" i_stop="61019" i_length="862">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.630" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61018" g_stop="60821" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="622" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60820" i_stop="60539" i_length="282">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60538" g_stop="59830" g_length="709"/>
          <reference_exon_boundary r_type="cDNA" r_start="623" r_stop="1331" r_length="709" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="-" ref_id="SGN-U581155" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1305</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U581155" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62278" e_stop="61881"/>
          <exon e_start="61018" e_stop="60821"/>
          <exon e_start="60538" e_stop="59830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCCTATCGAAAGCCTTTAATTTGTTTCCTCGATAGACATTTAAATTAAGTGATGGGTTTTCGTTTGAGTCATTTGAGTCTTGCATTGAGTTTTGTGGCACTTGCACTTGCAGGTGTTGCTATTTATAGAAATACTTATGAAGCCATCATCATGAAAAACGGTTCACTCCTCAAAAATGTTTCTCCAGATTTCGATTCGTTGGAATCAGGCGTAGCCAGTATTTTAACCTTAAATAATAATAAGAAGAGAAATTCAGACAAGTACTTGAGACAGCAACTAACTCCGGAGGCATGCGTTTTCTCAGCTGTACGAGCAGTTGTGGACAGTGCTATTGATGCAGAAACTCGCATGGGAGCTTCTCTCATTCGTCTCCACTTTCATGACTGCTTCGTTGATGTAAATATATATTTCCTTCGCTCTTTTTTTATCGTATTTGATTATGCACAAAATTTTATTTGAAGTCACTTAAATATTTTATGCTTGTTCAAACAAATTTGAAAATTCTTTCAGTTTTTCCTGAACTCACAATGCATGCAGTCAATTACTTTACTAGGGAAAATGCACAAGTACATTCTCAACCTATGTCCGAAATTACAGAGACACACTTATATTATACTAAGGTTCTATTACTCCCCTGAACTTATTTTATAAGTAATATTCTACCTAGCTTGAAAAAAAAGTCAACCTGCGTAAGGCCAACAAGATAGTGTCACGTAGGCCGAAAAAAAGTAAAAAATTATTAATAAAATAAGTTAAGTAAAATAATAGGACCTTAGTATAGTATAAGCGTGTCTCTAAAATTTCGGGTATAGGTTAAAGGGACTACTTAAATTGAAATGAAAAGAGTAGAGGGATATCATTTTTTAAGACAGGCTAAAAAGAGTACAATGTTAGGTGTAGCATATTAATTGAATCCGAGTCCTTTTCCTCTTATTAATTAAACCTGGCCGTATGATCATATTTTTCTTTCATAAATAAATAAATTGTTGAAAGATCTGAGGCTACGAACTCCAAATTAAAATTATAATGCCATACTTGTTGTTTTAAATCGCAAATATTTAAAAAAAAAATACTTTTTCTTTTGAACTCCCCGTCAAGTAAAATATCTTCGCACACATTTTGCTTCTACATGAACTCCAAAAACTTTGAAAAGTCTAGTCTGCTTTCCAGTTTTATTTTATTTTAGATCTTCTGCAGTTGATTTATGTATTTGACTAATTATACCTCTCTCGTTTTCTTTTTTATTACGAAAAATAAGGGTTGTGATGGAGGTATTCTGCTAGATGATATTAATGGAACATTTACAGGGGAACAAAACTCACCACCCAACGCCAACTCAGCCAGAGGTTATGAAGTAATAGCACAAGCTAAACAAAGTGTCATAAACACATGCCCCAACGTATCTGTATCTTGTGCCGACATATTAGCTATTGCTGCTCGTGATTCTGTTGCTAAAGTAAGTCTATCATTCATTTTACAGTTTGATAATTTCTACCAAAATTAATTACGAATAGTAACAAATGGATATTTAATCAAACTCTAAAGTCATCGTGGAAGTTGAGAAATGTTCAAAGAGATGACCAAATTCCACATCCACAATCAATGTGGAAATTGTGACACCTCGCCTGTGGGCGTCTAACATTTAATAGATGAAGCATTGTATTTATTTAGGTTATGATGATATGACAAAGAAATTGACTTGGGCTAACTCAAACTCTGTTTTATTGGTATTTGACAGTTAGGAGGACAAACTTATAGCGTTGCATTAGGGAGAAGCGATGCTAGAACTGCCAACTTTAGTGGTGCTATAAATCAACTTCCAGCTCCATTCGACAACCTAACAGTCCAAATACAGAAATTCAGCGACAAAAATTTCACCCTCCGTGAAATGGTTGCACTAGCTGGTGCACACACGGTAGGTTTCGCCAGGTGTTCCACAGTTTGCACCAGCGGTAACGTTAATCCTGCCGCACAACTCCAATGCAACTGCTCCGCCACGCTAACTGATTCTGATTTGCAACAATTGGATACTACTCCTACTATGTTCGACAAAGTTTACTACGATAACTTAAACAGCAACCAAGGCATAATGTTTTCAGATCAAGTTTTGACCGGGGATGCTACAACTGCTGGTTTTGTAACGGATTATAGCAACGATGTGAACGTTTTCCTTGGAGATTTTGCTGCTGCCATGATCAAGATGGGAGACTTGCCCCCCTCCGCCGGCGCTCAATTGGAAATTCGTGATGTTTGTAGCAGGGTTAATCCCACTTCAGTGGCTTCTATGTGAAAAATTCGGAAATTTTAATTAACTTATCTCGCGACTAGTTGCTTCATGTTTTCTTCAAAATAAAAGAATCACTGGCTCCAGAATGTGGTTTGGTTTTGGTATTTGTTTTGTAATCCATCCTATTTTATATGAATATTGTTTTCCTTGTGTGCTAATG</genome_strand>
        <mrna_strand>ATCCCTATCGAAAGCCTTTAATTTGTTTCCTCGATAGACATTTAAATTAAGTGATGGGTTTTCGTTTGAGTCATTTGAGTCTTGCATTGAGTTTTGTGGCACTTGCACTTGCAGGTGTTGCTATTTATAGAAATACTTATGAAGCCATCATCATGAAAAACGGTTCACTCCTCAAAAATGTTTCTCCAGATTTCGATTCGTTGGAATCAGGCGTAGCCAGTATTTTAACCTTAAATAATAATAAGAAGAGAAATTCAGACAAGTACTTGAGACAGCAACTAACTCCGGAGGCATGCGTTTTCTCAGCTGTACGAGCAGTTGTGGACAGTGCTATTGATGCAGAAACTCGCATGGGAGCTTCTCTCATTCGTCTCCACTTTCATGACTGCTTCGTTGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGTGATGGAGGTATTCTGCTAGATGATATTAATGGAACATTTACAGGGGAACAAAACTCACCACCCAACGCCAACTCAGCCAGAGGTTATGAAGTAATAGCACAAGCTAAACAAAGTGTCATAAACACATGCCCCAACGTATCTGTATCTTGTGCCGACATATTAGCTATTGCTGCTCGTGATTCTGTTGCTAAA..........................................................................................................................................................................................................................................................................................TTAGGAGGACAAACTTATAGCGTTGCATTAGGGAGAAGCGATGCTAGAACTGCCAACTTTAGTGGTGCTATAAATCAACTTCCAGCTCCATTCGACAACCTAACAGTCCAAATACAGAAATTCAGCGACAAAAATTTCACCCTCCGTGAAATGGTTGCACTAGCTGGTGCACACACGGTAGGTTTCGCCAGGTGTTCCACAGTTTGCACCAGCGGTAACGTTAATCCTGCCGCACAACTCCAATGCAACTGCTCCGCCACGCTAACTGATTCTGATTTGCAACAATTGGATACTACTCCTACTATGTTCGACAAAGTTTACTACGATAACTTAAACAGCAACCAAGGCATAATGTTTTCAGATCAAGTTTTGACCGGGGATGCTACAACTGCTGGTTTTGTAACGGATTATAGCAACGATGTGAACGTTTTCCTTGGAGATTTTGCTGCTGCCATGATCAAGATGGGAGACTTGCCCCCCTCCGCCGGCGCTCAATTGGAAATTCGTGATGTTTGTAGCAGGGTTAATCCCACTTCAGTGGCTTCTATGTGAAAAATTCGGAAATTTTAATTAACTTATCTCACGACTAGTTGCTTCATGTTTTCTTCAAAATAAAAGAATCACTGGCTCCAGAATGTGGTTTGGTTTTGGTATTTGTTTTGTAATCCATCCTATTTTATATGAATATTGTTTTCCTTGTGTGCTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U590488" ref_strand="+" ref_description="SGN-U590488 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|129807|sp|P15003|PER1_SOLLC (e_value=3e-47) RecName:; (*SWP) sp|P15003|PER1_SOLLC (e_value=2e-48) Suberization-associated anionic peroxidase 1 OS=Solanum lycopersicum GN=TAP1; ">
      <seq>taatttgtttcctcgatagacatttaaattaagtgatgggttttcgtttgagtcatttgagtcttgcattgagttttgtggcacttgcacttgcaggtgttgctatttatagaaatacttatgaagccatcatcatgaaaaacggttcactcctcaaaaatgtttctccagatttcgattcgttggaatcaggcgtagccagtattttaaccttaaataataataagaagagaaattcagacaagtacttgagacagcaactaactccggaggcatgcgttttctcagctgtacgagcagttgtggacagtgctattgatgcagaaactcgcatgggagcttctctcattcgtctccactttcatgactgcttcgttgatgtaaatatatatttccttcgctctttttttatcgtatttgattatgcacaaaattttatttgaagtcacttaaatattttatgcttgttcaaacaaatttgaaaattctttcagtttttcctgaactcacaatgcatgcagtcaattactttactagggaaaatgcacaagtacattctcaacctatgtccgaaattacagagacacacttatattatactaaggntctattactcccctgaacttattttataagtaatattctacctagcttgaaaaaaaagtcaacctgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="-" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="62560" stop="61287"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62260" g_stop="61587" g_length="674"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="674" r_length="674" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="-" ref_id="SGN-U590488" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U590488" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62260" e_stop="61587"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTTGTTTCCTCGATAGACATTTAAATTAAGTGATGGGTTTTCGTTTGAGTCATTTGAGTCTTGCATTGAGTTTTGTGGCACTTGCACTTGCAGGTGTTGCTATTTATAGAAATACTTATGAAGCCATCATCATGAAAAACGGTTCACTCCTCAAAAATGTTTCTCCAGATTTCGATTCGTTGGAATCAGGCGTAGCCAGTATTTTAACCTTAAATAATAATAAGAAGAGAAATTCAGACAAGTACTTGAGACAGCAACTAACTCCGGAGGCATGCGTTTTCTCAGCTGTACGAGCAGTTGTGGACAGTGCTATTGATGCAGAAACTCGCATGGGAGCTTCTCTCATTCGTCTCCACTTTCATGACTGCTTCGTTGATGTAAATATATATTTCCTTCGCTCTTTTTTTATCGTATTTGATTATGCACAAAATTTTATTTGAAGTCACTTAAATATTTTATGCTTGTTCAAACAAATTTGAAAATTCTTTCAGTTTTTCCTGAACTCACAATGCATGCAGTCAATTACTTTACTAGGGAAAATGCACAAGTACATTCTCAACCTATGTCCGAAATTACAGAGACACACTTATATTATACTAAGGTTCTATTACTCCCCTGAACTTATTTTATAAGTAATATTCTACCTAGCTTGAAAAAAAAGTCAACCTGCG</genome_strand>
        <mrna_strand>TAATTTGTTTCCTCGATAGACATTTAAATTAAGTGATGGGTTTTCGTTTGAGTCATTTGAGTCTTGCATTGAGTTTTGTGGCACTTGCACTTGCAGGTGTTGCTATTTATAGAAATACTTATGAAGCCATCATCATGAAAAACGGTTCACTCCTCAAAAATGTTTCTCCAGATTTCGATTCGTTGGAATCAGGCGTAGCCAGTATTTTAACCTTAAATAATAATAAGAAGAGAAATTCAGACAAGTACTTGAGACAGCAACTAACTCCGGAGGCATGCGTTTTCTCAGCTGTACGAGCAGTTGTGGACAGTGCTATTGATGCAGAAACTCGCATGGGAGCTTCTCTCATTCGTCTCCACTTTCATGACTGCTTCGTTGATGTAAATATATATTTCCTTCGCTCTTTTTTTATCGTATTTGATTATGCACAAAATTTTATTTGAAGTCACTTAAATATTTTATGCTTGTTCAAACAAATTTGAAAATTCTTTCAGTTTTTCCTGAACTCACAATGCATGCAGTCAATTACTTTACTAGGGAAAATGCACAAGTACATTCTCAACCTATGTCCGAAATTACAGAGACACACTTATATTATACTAAGGNTCTATTACTCCCCTGAACTTATTTTATAAGTAATATTCTACCTAGCTTGAAAAAAAAGTCAACCTGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U580369" ref_strand="+" ref_description="SGN-U580369 Tomato 200607#2 [15 ESTs aligned] (*GB) gi|129811|sp|P15004|PER2_SOLLC (e_value=5e-173) RecName:; (*ATH) AT5G05340.1 (e_value=6e-59) | Symbol: None | peroxidase, putative, similar to peroxidase (Nicotiana tabacum) gi:5381253:dbj:BAA82306; similar to Peroxidase P7 (Brassica rapa (Turnip)) SWISS-PROT:P00434 | chr5:1578952-1580876 REVERSE | Aliases: K18I23.14, K18I23_14; (*SWP) sp|P15004|PER2_SOLLC (e_value=3e-174) Suberization-associated anionic peroxidase 2 OS=Solanum lycopersicum GN=TAP2; ">
      <seq>ggtttcttccaaatagacatttaataatttcttttaagtgatgggttttcgtttgagccttttgagccttgcggtgagccttgtggcacttgcactcgcaggtgttgccatttatagaaatacttatgaggccatgatcatgaataacggatcactcctccaaaatatctctccagatatcgattcgttggaatcaggcgaagtcagtattttaattttaaatgataagaagaaaaattcagacaaatatttgagtcagcaattaactcaggagtcttgcgttttctcagctgtgaaaggagttgtggacagtgccattgataatgaaacgcgcatgggagcttctctcattcgtctacatttccatgactgctttgttgatggttgtgatggaggtattctgctagatgatattaatggaacattcaccggggaacaaaactcaccacccaacaacaactcagtcagaggctttgaagtgatagcacaagctaaacaaagtgttgtagattcatgccccaacatatctgtatcttgtgctgatattttagctattgctgctcgtgattcccttgctaaattaggaggacaaacttataccgttgcactagggagaagcgatgctacaacagccaactttagtggtgctataaatcaacttccagctccatccgacaacctaactgttcaaatacagaaattcagcgacaaaaatttcactgtccgtgaaatggtggcactagctggcgcgcacacggtaggtttcgccaggtgttccacagtttgcaccagcggtaacgttaatcctgccgcacaactccaatgcaactgctccgccacgctaactgattccgatttgcaacaattggatacaactcctgctgtgttcgacaaagtttactatgataacttaaacaacaaccaagggataatgttctcggatcaagttttgactgggaatactacaactgctggttttgtaaccacttatagcaacaatgttactgtttttcttgaagattttgctgctgctatgatcaaaatggggaatttacctccctccgctggcgctcaattggaaattcgcgatgtttgcagcagggttaatcccacttctgtggcttctatgtgaaaaatttcggaaattttaagtagcttttatcttactatttgtcgcatcatgttttcatctttttcagtattgatgcaataatatatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="-" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="66906" stop="63967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66607" g_stop="66227" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66226" i_stop="65231" i_length="996">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65230" g_stop="65033" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="580" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65032" i_stop="64908" i_length="125">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64907" g_stop="64267" g_length="641"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="1221" r_length="641" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="-" ref_id="SGN-U580369" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1220</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U580369" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66607" e_stop="66227"/>
          <exon e_start="65230" e_stop="65033"/>
          <exon e_start="64907" e_stop="64267"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTCTTCCAAATAGACATTTAATAATTTC-TTTAAGTGATGGGTTTTCGTTTGAGCCTTTTGAGCCTTGCGGTGAGCCTTGTGGCACTTGCACTCGCAGGTGTTGCCATTTATAGAAATACTTATGAGGCCATGATCATGAATAACGGATCACTCCTCCAAAATATCTCTCCAGATATCGATTCGTTGGAATCAGGCGAAGTCAGTATTTTAATTTTAAATGATAAGAAGAAAAATTCAGACAAATATTTGAGTCAGCAATTAACTCAGGAGTCTTGCGTTTTCTCAGCTGTGAAAGGAGTTGTGGACAGTGCCATTGATAATGAAACGCGCATGGGAGCTTCTCTCATTCGTCTACATTTCCATGACTGCTTTGTTGATGTAAATATTCTTTCGTCCTTTTTCTCCCGCTCAATATTTTATAATAATGTAATTTTAAGGTTGATATAATCGTATGAATAAGTATTTACTTATTTTTTATCATAAATTTTAAATTTTTTAATTTTAACTTTTAAAATCTCTTACAACTAAACGCTTAATATAAAAATAGAAAGATCGGATTTTTTATTTTATTTTTGAGGACATATTAAAAAAATAAAACAGTATGTTAGGTGTAGTATATAAATTGAATCCGAGTCCTCCTTTCTCTTATTAAAATTAAAAGTAAAAACCTGGCTCCATGGACCATGGTCATATAATATTATTTAATGTAAATATGTGTAAGTGGTCCGAAAGGAAAGTGATCCGTAAAATTATTTGAAAAATCTGACGGAACGAATTTCAAAACATGCTTATGAAAACTGTGTGGGTTTTTATTAGTGTAGTAGTTGTAAAGTTGCATCATGAATGGTACCATCTTCTTGTAATTTGTGAAATGAACAGTTTCTTATTAGTTTTTTCTGCCTTACAACTCTTTTTTATCAGCCACTTGGCTAATTTTGGGCAACTTTATCTCCTTTATCTCACTCATCACTTTCTCTTTTGCTCGATTCTCTTTGCATATTTTAGATATATATAAATCTAGTCCCATTTTTATATACCTTAAATAAATAGTCTGTTTTACTCATTTTCATTCTATCTAGCATGCTCTTTTTCTATATTAATATATTGATAAAAAAAATATATGATTTTACAATATCTAACTTAAAATCTAATATAAAATTATTGATTAGTAAGACAATATTTAATTTGTTTGAACTATAAGGAGAACTAGTAAATATAGTAGGATTATTTATCTAATTAGGTTTGTTTTTTCTTTAAATAAATTCATGTTAAATTAAACCACATCCATATAAATTGAAGCAATAGAGTAACTAATTATGTATACATATAATTGACTAATTACAGTTATGTTTTTGGTTTGGAAAAAAAAAACAGGGTTGTGATGGAGGTATTCTGCTAGATGATATTAATGGAACATTCACCGGGGAACAAAACTCACCACCCAACAACAACTCAGTCAGAGGCTTTGAAGTGATAGCACAAGCTAAACAAAGTGTTGTAGATTCATGCCCCAACATATCTGTATCTTGTGCTGATATTTTAGCTATTGCTGCTCGTGATTCCCTTGCTAAAGTAAGTCCATTGCTCAATTTTTAGTCAAAGTTACTATTTTTAATTTAGCTTTACACTACATGTTTAATTAACTTATATCATATGATCAATAGTAAGTTAAACTCTATTTTATTGGTATTTGACAGTTAGGAGGACAAACTTATACCGTTGCACTAGGGAGAAGCGATGCTACAACAGCCAACTTTAGTGGTGCTATAAATCAACTTCCAGCTCCATCCGACAACCTAACTGTTCAAATACAGAAATTCAGCGACAAAAATTTCACTGTCCGTGAAATGGTGGCACTAGCTGGCGCGCACACGGTAGGTTTCGCCAGGTGTTCCACAGTTTGCACCAGCGGTAACGTTAATCCTGCCGCACAACTCCAATGCAACTGCTCCGCCACGCTAACTGATTCCGATTTGCAACAATTGGATACAACTCCTGCTGTGTTCGACAAAGTTTACTATGATAACTTAAACAACAACCAAGGGATAATGTTCTCGGATCAAGTTTTGACTGGGAATACTACAACTGCTGGTTTTGTAACCACTTATAGCAACAATGTTACTGTTTTTCTTGAAGATTTTGCTGCTGCTATGATCAAAATGGGGAATTTACCTCCCTCCGCTGGCGCTCAATTGGAAATTCGCGATGTTTGCAGCAGGGTTAATCCCACTTCTGTGGCTTCTATGTGAAAAATTTCGGAAATTTTAAGTAGCTTTTATCTTACTATTTGTCGCATCATGTTTTCATCTTTTTCAGTATTGATGCAATAATATATATG</genome_strand>
        <mrna_strand>GGTTTCTTCCAAATAGACATTTAATAATTTCTTTTAAGTGATGGGTTTTCGTTTGAGCCTTTTGAGCCTTGCGGTGAGCCTTGTGGCACTTGCACTCGCAGGTGTTGCCATTTATAGAAATACTTATGAGGCCATGATCATGAATAACGGATCACTCCTCCAAAATATCTCTCCAGATATCGATTCGTTGGAATCAGGCGAAGTCAGTATTTTAATTTTAAATGATAAGAAGAAAAATTCAGACAAATATTTGAGTCAGCAATTAACTCAGGAGTCTTGCGTTTTCTCAGCTGTGAAAGGAGTTGTGGACAGTGCCATTGATAATGAAACGCGCATGGGAGCTTCTCTCATTCGTCTACATTTCCATGACTGCTTTGTTGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGTGATGGAGGTATTCTGCTAGATGATATTAATGGAACATTCACCGGGGAACAAAACTCACCACCCAACAACAACTCAGTCAGAGGCTTTGAAGTGATAGCACAAGCTAAACAAAGTGTTGTAGATTCATGCCCCAACATATCTGTATCTTGTGCTGATATTTTAGCTATTGCTGCTCGTGATTCCCTTGCTAAA.............................................................................................................................TTAGGAGGACAAACTTATACCGTTGCACTAGGGAGAAGCGATGCTACAACAGCCAACTTTAGTGGTGCTATAAATCAACTTCCAGCTCCATCCGACAACCTAACTGTTCAAATACAGAAATTCAGCGACAAAAATTTCACTGTCCGTGAAATGGTGGCACTAGCTGGCGCGCACACGGTAGGTTTCGCCAGGTGTTCCACAGTTTGCACCAGCGGTAACGTTAATCCTGCCGCACAACTCCAATGCAACTGCTCCGCCACGCTAACTGATTCCGATTTGCAACAATTGGATACAACTCCTGCTGTGTTCGACAAAGTTTACTATGATAACTTAAACAACAACCAAGGGATAATGTTCTCGGATCAAGTTTTGACTGGGAATACTACAACTGCTGGTTTTGTAACCACTTATAGCAACAATGTTACTGTTTTTCTTGAAGATTTTGCTGCTGCTATGATCAAAATGGGGAATTTACCTCCCTCCGCTGGCGCTCAATTGGAAATTCGCGATGTTTGCAGCAGGGTTAATCCCACTTCTGTGGCTTCTATGTGAAAAATTTCGGAAATTTTAAGTAGCTTTTATCTTACTATTTGTCGCATCATGTTTTCATCTTTTTCAGTATTGATGCAATAATATATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U597836" ref_strand="+" ref_description="SGN-U597836 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|147788102|emb|CAN67069.1| (e_value=5e-33) hypothetical; (*ATH) AT4G27280.1 (e_value=4e-27)  Symbol: None | calcium-binding EF hand family protein, similar to EF-hand Ca2+-binding protein CCD1 (Triticum aestivum) GI:9255753; contains INTERPRO:IPR002048 calcium-binding EF-hand domain | chr4:13663582-13664246 REVERSE | Aliases: M4I22.90, M4I2... ; ">
      <seq>gaaaacatcgataatatccattttcgaaaattcatcgtgtacgttaattaatttttaaggcatggctacattgggacgtgacgttgtgtttgaggatttttttccatcaatggtggagaaactagggtcagaagggttcttgaaggagctaaagaacgggttccgggcattgatggataaggagagggaagtgatcacgtttgagagcttgaagaggaattcggcgttgttagggttagaaggaatgagtgatgatgaactaatgtgtatgttgagggaaggggatttgaatggagatgattgcttgaatgagaaagaattttgtgtgctaatggtaaggttgagccctgatttgatggaaaaatcgagaatgtggttcgctcagagcattgaaaatgatctgatgtaggctcgtattagcatgtgctttattaagggcattcattttgaagtaggattattaagctattctacctaggtctattaatttctatcatgttatttttcctcctatgtatgtgtcgtctagttttattattagtgaagttcattgttttatttgccattatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="-" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="75916" stop="74747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75617" g_stop="75047" g_length="571"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="570" r_length="570" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="-" ref_id="SGN-U597836" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U597836" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75617" e_stop="75047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACATCGATAATATCCATTTTCGAAAATTCATCGTGTACGTTAATTAATTTTTAAGGCATGGCTACATTGGGACGTGACGTTGTGTTTGAGGATTTTTTTCCATCAATGATGGAGAAACTAGGGTCAGAAGGGTTCTTGAAGGAGCTAAAGAACGGGTTCCGGGCATTGATGGATAAGGAGAGGGAAGTGATCACGTTTGAGAGCTTGAAGAGGAATTCGGCGTTGTTAGGGTTAGAAGGAATGAGTGATGATGAACTAATGTGTATGTTGAGGGAAGGGGATTTGAATGGAGATGATTGCTTGAATGAGAAAGAATTTTGTGTGCTAATGGTAAGGTTGAGCCCTGATTTGATGGAAAAATCGAGAATGTGGTTCGCTCAGAGCATTGAAAATGATCTGATGTAGGCTCGTATTAGCATGTGCTTTATTGAGGGCATTCATTTTGAAGTAGGATTATTAAGCTATTCTAGCTAGGTCTATTAATTTCTATCTTGTTATTTTTTCCTCCTATGTATGTGTCGTCTAGTTTTATTATTAGTGAAGTTCATTGTTTTATTTGCCATTATT</genome_strand>
        <mrna_strand>GAAAACATCGATAATATCCATTTTCGAAAATTCATCGTGTACGTTAATTAATTTTTAAGGCATGGCTACATTGGGACGTGACGTTGTGTTTGAGGATTTTTTTCCATCAATGGTGGAGAAACTAGGGTCAGAAGGGTTCTTGAAGGAGCTAAAGAACGGGTTCCGGGCATTGATGGATAAGGAGAGGGAAGTGATCACGTTTGAGAGCTTGAAGAGGAATTCGGCGTTGTTAGGGTTAGAAGGAATGAGTGATGATGAACTAATGTGTATGTTGAGGGAAGGGGATTTGAATGGAGATGATTGCTTGAATGAGAAAGAATTTTGTGTGCTAATGGTAAGGTTGAGCCCTGATTTGATGGAAAAATCGAGAATGTGGTTCGCTCAGAGCATTGAAAATGATCTGATGTAGGCTCGTATTAGCATGTGCTTTATTAAGGGCATTCATTTTGAAGTAGGATTATTAAGCTATTCTACCTAGGTCTATTAATTTCTATCATGTTA-TTTTTCCTCCTATGTATGTGTCGTCTAGTTTTATTATTAGTGAAGTTCATTGTTTTATTTGCCATTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U602189" ref_strand="+" ref_description="SGN-U602189 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157328299|emb|CAO17786.1| (e_value=2e-39) unnamed; (*ATH) AT1G61610.1 (e_value=1e-34)  Symbol: None | S-locus lectin protein kinase family protein, similar to KI domain interacting kinase 1 (Zea mays) gi:2735017:gb:AAB93834; contains S-locus glycoprotein family domain, Pfam:PF00954 | chr1:22737137-22740174 FORWARD | Aliases: T25B24.4,... ; (*SWP) sp|P17840|SLSG3_BRAOL (e_value=2e-22) S-locus-specific glycoprotein S13 (Fragment) OS=Brassica oleracea GN=SLSG; ">
      <seq>aaaagataacagtcaagcataccgaaaagagaaagaagtgtgagcaaatatcacgaaaatagtattgcaggctgcagatataggtattctccattttagcttatacagaattaatccacacatgcaaaacaaaccttaataagcaatgaaattaagcacaagagagatacttctgtttccagttgttcttgttctgtttctttctatatcaactgcttcaggtatcattagcaccaataaattcctgcgagattcagaaactttagtctccaatgacaaaagattcatattcgggttctttagtcttgaaaattcgacgaatcgttatgttggtgttatgtttaatgtccaaccaccaactgtagtatgggttgccaacagagagagacctttacaggattctagaggaagagtgacaatatctgatgatggaaatcttgtaatcttgaattcacagaataggagtatatggtcatcaaatatttcaccagctgtgagaaattctacagcgcagctcttggatactggaaacttaattttgaacgacagctccgatgggagggttctctgggaaagttttcgggatccttcagattgcttcttgcagaccatgaaaattggcgttgatgttagtactaacacgacaaatctgctgaaatcatggataagtcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="+" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="83290" stop="84562"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83590" g_stop="84262" g_length="673"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="673" r_length="673" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="+" ref_id="SGN-U602189" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U602189" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83590" e_stop="84262"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGATAACAGTCAAGCATACCGAAAAGAGAAAGAAGTGTGAGCAAATATCACGAAAATAGTATTGCAGGCTGCAGATATAGGTATTCTCCATTTTAGCTTATACAGAATTAATCCACACATGCAAAACAAACCTTAATAAGCAATGAAATTAAGCACAAGAGAGATACTTCTGTTTCCAGTTGTTCTTGTTCTGTTTCTTTCTATATCAACTGCTTCAGGTATCATTAGCACCAATAAATTCCTGCGAGATTCAGAAACTTTAGTCTCCAATGACAAAAGATTCATATTCGGGTTCTTTAGTCTTGAAAATTCGACGAATCGTTATGTTGGTGTTATGTTTAATGTCCAACCACCAACTGTAGTATGGGTTGCCAACAGAGAGAGACCTTTACAGGATTCTAGAGGAAGAGTGACAATATCTGATGATGGAAATCTTGTAATCTTGAATTCACAGAATAGGAGTATATGGTCATCAAATATTTCACCAGCTGTGAGAAATTCTACAGCGCAGCTCTTGGATACTGGAAACTTAATTTTGAACGACAGCTCCAATGGGAGGGTTCTCTGGGAAAGTTTTCGGGATCCTTCAGATTGCTTCTTGCAGACCATGAAAATTGGCGTTGATGTTAGTACTAACACGACAAATCTGCTGAAATCATGGATAAGTCCT</genome_strand>
        <mrna_strand>AAAAGATAACAGTCAAGCATACCGAAAAGAGAAAGAAGTGTGAGCAAATATCACGAAAATAGTATTGCAGGCTGCAGATATAGGTATTCTCCATTTTAGCTTATACAGAATTAATCCACACATGCAAAACAAACCTTAATAAGCAATGAAATTAAGCACAAGAGAGATACTTCTGTTTCCAGTTGTTCTTGTTCTGTTTCTTTCTATATCAACTGCTTCAGGTATCATTAGCACCAATAAATTCCTGCGAGATTCAGAAACTTTAGTCTCCAATGACAAAAGATTCATATTCGGGTTCTTTAGTCTTGAAAATTCGACGAATCGTTATGTTGGTGTTATGTTTAATGTCCAACCACCAACTGTAGTATGGGTTGCCAACAGAGAGAGACCTTTACAGGATTCTAGAGGAAGAGTGACAATATCTGATGATGGAAATCTTGTAATCTTGAATTCACAGAATAGGAGTATATGGTCATCAAATATTTCACCAGCTGTGAGAAATTCTACAGCGCAGCTCTTGGATACTGGAAACTTAATTTTGAACGACAGCTCCGATGGGAGGGTTCTCTGGGAAAGTTTTCGGGATCCTTCAGATTGCTTCTTGCAGACCATGAAAATTGGCGTTGATGTTAGTACTAACACGACAAATCTGCTGAAATCATGGATAAGTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U581765" ref_strand="+" ref_description="SGN-U581765 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|147840283|emb|CAN63986.1| (e_value=3e-40) hypothetical; (*ATH) AT1G11300.1 (e_value=9e-36) | Symbol: None | S-locus lectin protein kinase family protein, contains protein kinase domain, Pfam:PF00069; contains S-locus glycoprotein family domain, Pfam:PF00954 | chr1:3794389-3800719 FORWARD | Aliases: T28P6.6, T28P6_6; (*SWP) sp|P17840|SLSG3_BRAOL (e_value=5e-22) S-locus-specific glycoprotein S13 (Fragment) OS=Brassica oleracea GN=SLSG; ">
      <seq>gcttattgggagaagaaaacttgataagaaatgaagctgagcttaagctgtaagaatatactgcgtggtggtgcttttcttgttctgtttttttctcataacaaatgcttcatcagactccattagtattaatgagtttctgcaagattcagaaactttagtctctaataacaaaacattcaaattggttttttttgtcctgagaattcggcgaatcgttatgttggtatcatgtttaatatgaaatcacaatctgttatatgggtagccaacagagaccagcctttacaagattctagtggaagagtaacaatatcagaagatggcaatcttgtaatcttgaatggacagggaaagagtgtatggtcatcaaatatttcacctgctgtgaggaattctacagcccagctcttggatactggaaacttagttttgaaggacaactcaagtgagagagttctatgggaaagttttagtgatctttcagattcctacttgcagaacatgaaacttggcactgataagagtactaacaccacaaatctgttgaaatcatggagaagtcctgtagaaccatctgatgggagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="+" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="88894" stop="90082"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89194" g_stop="89782" g_length="589"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="589" r_length="589" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="+" ref_id="SGN-U581765" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U581765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89194" e_stop="89782"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTATTGGGAGAAGAAAACTTGATAAGAAATGAAGCTGAGCTTAAGCTGTAAGAATATACTTCTTTGTTGTGCTTTTCTTGTTCTG-TTTTTTCTTATAACAAATGCTTCATCAGACTCCATTAGTATTAATGAGTTTCTGCAAGATTCAGAAACTTTAGTCTCTAATAACAAAACATTCAAATTGGTTTTTTTTTGTCCTGAGAATTCGGCGAATCGTTATGTTGGTATCATGTTTAATATGAAATCACAATCTGTTATATGGGTAGCCAACAGAGACCAGCCTTTACAAGATTCTAGTGGAAGAGTAACAATATCAGAAGATGGCAATCTTGTAATCTTGAATGGACAGGGAAAGAGTGTATGGTCATCAAATATTTCACCTGCTGTGAGGAATTCTACAGCCCAGCTCTTGGATACTGGAAACTTAGTTTTGAAGGACAACTCAAGTGAGAGAGTTCTATGGGAAAGTTTTAGTGATCTTTCAGATTCCTACTTGCAGAACATGAAACTTGGCACTGATAAGAGTACTAACACCACAAATCTGTTGAAATCATGGAGAAGTCCTGTAGATCCATCTGATGGGAGTT</genome_strand>
        <mrna_strand>GCTTATTGGGAGAAGAAAACTTGATAAGAAATGAAGCTGAGCTTAAGCTGTAAGAATATACTGCGTGGTGGTGCTTTTCTTGTTCTGTTTTTTTCTCATAACAAATGCTTCATCAGACTCCATTAGTATTAATGAGTTTCTGCAAGATTCAGAAACTTTAGTCTCTAATAACAAAACATTCAAATTGG-TTTTTTTTGTCCTGAGAATTCGGCGAATCGTTATGTTGGTATCATGTTTAATATGAAATCACAATCTGTTATATGGGTAGCCAACAGAGACCAGCCTTTACAAGATTCTAGTGGAAGAGTAACAATATCAGAAGATGGCAATCTTGTAATCTTGAATGGACAGGGAAAGAGTGTATGGTCATCAAATATTTCACCTGCTGTGAGGAATTCTACAGCCCAGCTCTTGGATACTGGAAACTTAGTTTTGAAGGACAACTCAAGTGAGAGAGTTCTATGGGAAAGTTTTAGTGATCTTTCAGATTCCTACTTGCAGAACATGAAACTTGGCACTGATAAGAGTACTAACACCACAAATCTGTTGAAATCATGGAGAAGTCCTGTAGAACCATCTGATGGGAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U567053" ref_strand="-" ref_description="SGN-U567053 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|147840284|emb|CAN63987.1| (e_value=4e-81) hypothetical; (*ATH) AT1G11300.1 (e_value=4e-75) | Symbol: None | S-locus lectin protein kinase family protein, contains protein kinase domain, Pfam:PF00069; contains S-locus glycoprotein family domain, Pfam:PF00954 | chr1:3794389-3800719 FORWARD | Aliases: T28P6.6, T28P6_6; (*SWP) sp|Q8GYA4|CRK10_ARATH (e_value=4e-65) Cysteine-rich receptor-like protein kinase 10 OS=Arabidopsis thaliana GN=CRK10; ">
      <seq>gttggtttatgaatacatgccaaaaagaagcttggatgcctatctctttggtgtacacattgaagaggaatacttccttgattggagcaaacgtgtgatcatcattgagggaatcggccgaggcctcctataccttcacagggattcaagactaaggattatccacagggatttaaaggcaagcaacattttgttggatgaatatctgaaccctaaaatttcagattttggtatggcaagaattattgcaggcaaccaagatcaagccaatacaattagggttgttggaacctatggttatatggcacctgaatatgcaatgacaggaagattctcagaaaaatcagatgtctacagctttggcgtattgttactggaaattattagcggaaggaggaacactagcttttaccaagaggatggtgcattaagccttctagcatgggcatggaagttgtggaatgaaaataagattgtcgaattggttgactccaagataattgaactacagctcaaaaaggagattcatagatgtgtacatgttggactattatgtgtacaagaatatgcagaagacaggccagatgtctccacagttttgtctatgctcacccgggaaattgatgatttaccaagtccttaacaacctgcatttacaacaagaccgaccccttccaagaaaggctcctctagaattcaagtctccgtgaacgatgttagcattactattatggaagcacgatagagatcatataattttagtgtaggcatatatcttattcatttcctgtaattattcttgtatgtgattctacatttagaatccaagagaagtttaaaccgagctgagtcctttagcagcgagaatttcagtcaagagattaacaagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="+" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="90953" stop="92708"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91253" g_stop="91302" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91303" i_stop="91407" i_length="105">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91408" g_stop="91651" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="294" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91652" i_stop="91736" i_length="85">
            <donor d_prob="0.883" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91737" g_stop="91887" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="445" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91888" i_stop="91962" i_length="75">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.786" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91963" g_stop="92408" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="891" r_length="446" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="+" ref_id="SGN-U567053" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>891</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U567053" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="91253" e_stop="91302"/>
          <exon e_start="91408" e_stop="91651"/>
          <exon e_start="91737" e_stop="91887"/>
          <exon e_start="91963" e_stop="92408"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGTTTATGAATACATGCCAAAAAGAAGCTTGGATGCCTATCTCTTTGGTTGGTTTCTTTTTCTTTTATTCCTTTTCTTTACATTCACTATTCAGTATGGTCTAACTAAAAAAGAAAAAAAATCGAACTGATACATTTTCAATGTACTTACAGGTGTACACATTGAAGAGGAATACTTCCTTGATTGGAGCAAACGTGTGATCATCATTGAGGGAATCGGCCGAGGCCTCCTATACCTTCACAGGGATTCAAGACTAAGGATTATCCACAGGGATTTAAAGGCAAGCAACATTTTGTTGGATGAATATCTGAACCCTAAAATTTCAGATTTTGGTATGGCAAGAATTATTGCAGGCAACCAAGATCAAGCCAATACAATTAGGGTTGTTGGAACCTAGTATGTTTGTGAATCTCATTCTCCATTTTATTCATGGTTAAAATGAAAAGAAAAAGTAATCGTTCAAATTTATAATGTGATGCAGTGGTTATATGGCACCTGAATATGCAATGACAGGAAGATTCTCAGAAAAATCAGATGTCTACAGCTTTGGCGTATTGTTACTGGAAATTATTAGCGGAAGGAGGAACACTAGCTTTTACCAAGAGGATGGTGCATTAAGCCTTCTAGCATGGGTAAGTTTTTATGAAAACTAAGCTCCACTTCATATGAAATGTCAACCTTTCATAGTCAATACTCTTGCTCTTCAGGCATGGAAGTTGTGGAATGAAAATAAGATTGTCGAATTGGTTGACTCCAAGATAATTGAACTACAGCTCAAAAAGGAGATTCATAGATGTGTACATGTTGGACTATTATGTGTACAAGAATATGCAGAAGACAGGCCAAATGTCTCCACAGTTTTGTCTATGCTCACCCGGGAAATTGATGATTTACCAAGTCCTAAACAACCTGCATTTACAACAAGACCGACCCCTTCCAAGAAAGGCTCCTCTAGAATTCAAGTCTCCGTGAACGATGTTAGCATTACTATTATGGAAGCACGATAGAGATCATATAATTTTAGTGTAGGCATATATCTTATTCATTTCCTGTAATTATTCTTGTATGTGATTCTACATTTAGAATCCAAGAGAAGTTTAAACCGAGCTGAGTCCTTTAGCAGCGAGAATTTCAGTCAAGAGATTAACAAGTT</genome_strand>
        <mrna_strand>GTTGGTTTATGAATACATGCCAAAAAGAAGCTTGGATGCCTATCTCTTTG.........................................................................................................GTGTACACATTGAAGAGGAATACTTCCTTGATTGGAGCAAACGTGTGATCATCATTGAGGGAATCGGCCGAGGCCTCCTATACCTTCACAGGGATTCAAGACTAAGGATTATCCACAGGGATTTAAAGGCAAGCAACATTTTGTTGGATGAATATCTGAACCCTAAAATTTCAGATTTTGGTATGGCAAGAATTATTGCAGGCAACCAAGATCAAGCCAATACAATTAGGGTTGTTGGAACCTA.....................................................................................TGGTTATATGGCACCTGAATATGCAATGACAGGAAGATTCTCAGAAAAATCAGATGTCTACAGCTTTGGCGTATTGTTACTGGAAATTATTAGCGGAAGGAGGAACACTAGCTTTTACCAAGAGGATGGTGCATTAAGCCTTCTAGCATGG...........................................................................GCATGGAAGTTGTGGAATGAAAATAAGATTGTCGAATTGGTTGACTCCAAGATAATTGAACTACAGCTCAAAAAGGAGATTCATAGATGTGTACATGTTGGACTATTATGTGTACAAGAATATGCAGAAGACAGGCCAGATGTCTCCACAGTTTTGTCTATGCTCACCCGGGAAATTGATGATTTACCAAGTCCTTAACAACCTGCATTTACAACAAGACCGACCCCTTCCAAGAAAGGCTCCTCTAGAATTCAAGTCTCCGTGAACGATGTTAGCATTACTATTATGGAAGCACGATAGAGATCATATAATTTTAGTGTAGGCATATATCTTATTCATTTCCTGTAATTATTCTTGTATGTGATTCTACATTTAGAATCCAAGAGAAGTTTAAACCGAGCTGAGTCCTTTAGCAGCGAGAATTTCAGTCAAGAGATTAACAAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>15</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="3940" PGL_stop="3324"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3940" e_stop="3800"/>
            <exon e_start="3692" e_stop="3324"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.999" e_score="0.993"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="3940" e_stop="3800" e_length="141"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.999">
            <gDNA_intron_boundary i_start="3799" i_stop="3693" i_length="107"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="3692" e_stop="3324" e_length="369"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3940" stop="3800"/>
              <exon start="3692" stop="3324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U570381" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTCCAAACACATTCAGTTAAGAAAGGTGCTGGACAAAACAGCGGTGCAACTAAAAATGGAAAAACAGAAAACCAAGTGGTGGCAACAAAAAAGAGGGAAAAGAAGAAACCCCTTCCTAGAGAGGAAATTGCAAAAGCTAG : GGAGGAGAAGAGGAAAGCACTTAGGGAAGCTACACGAAAAGCCACGATGAAGAACAAATGAGGTCTGGTGATAAGCCGAAGATATTTTACCAGAGGTGACATGAGCGAACATAAAACAAGAAACTCTGGTGATTTTGTGAAAGCTCACCTCGCGTATTATTAGCACCTGCCAGCTAGTTGTAATATTTTTGTTATTGGTTGATGACTTTGAGATGAAGAGAGCTGGAGGTCGTGTATGATTTTGCTTTAGAAAACAACTTAGGGTTCATGGTTTGCATGAATATGAATCCAAAAATTTTGTCCTATACTTTTAACCTACTTGGGAATGAGCAATGAAAATTATAAAGGGAAAAGGGTAGTTTGTATTCC</gDNA_template>
            <first_frame> C  P  N  T  F  S  *  E  R  C  W  T  K  Q  R  C  N  *  K  W  K  N  R  K  P  S  G  G  N  K  K  E  G  K  E  E  T  P  S  *  R  G  N  C  K  S  *  :  G  G  E  E  E  S  T  *  G  S  Y  T  K  S  H  D  E  E  Q  M  R  S  G  D  K  P  K  I  F  Y  Q  R  *  H  E  R  T  *  N  K  K  L  W  *  F  C  E  S  S  P  R  V  L  L  A  P  A  S  *  L  *  Y  F  C  Y  W  L  M  T  L  R  *  R  E  L  E  V  V  Y  D  F  A  L  E  N  N  L  G  F  M  V  C  M  N  M  N  P  K  I  L  S  Y  T  F  N  L  L  G  N  E  Q  *  K  L  *  R  E  K  G  S  L  Y  S </first_frame>
            <second_frame>  V  Q  T  H  S  V  K  K  G  A  G  Q  N  S  G  A  T  K  N  G  K  T  E  N  Q  V  V  A  T  K  K  R  E  K  K  K  P  L  P  R  E  E  I  A  K  A  R :   E  E  K  R  K  A  L  R  E  A  T  R  K  A  T  M  K  N  K  *  G  L  V  I  S  R  R  Y  F  T  R  G  D  M  S  E  H  K  T  R  N  S  G  D  F  V  K  A  H  L  A  Y  Y  *  H  L  P  A  S  C  N  I  F  V  I  G  *  *  L  *  D  E  E  S  W  R  S  C  M  I  L  L  *  K  T  T  *  G  S  W  F  A  *  I  *  I  Q  K  F  C  P  I  L  L  T  Y  L  G  M  S  N  E  N  Y  K  G  K  R  V  V  C  I   </second_frame>
            <third_frame>   S  K  H  I  Q  L  R  K  V  L  D  K  T  A  V  Q  L  K  M  E  K  Q  K  T  K  W  W  Q  Q  K  R  G  K  R  R  N  P  F  L  E  R  K  L  Q  K  L   : G  R  R  R  G  K  H  L  G  K  L  H  E  K  P  R  *  R  T  N  E  V  W  *  *  A  E  D  I  L  P  E  V  T  *  A  N  I  K  Q  E  T  L  V  I  L  *  K  L  T  S  R  I  I  S  T  C  Q  L  V  V  I  F  L  L  L  V  D  D  F  E  M  K  R  A  G  G  R  V  *  F  C  F  R  K  Q  L  R  V  H  G  L  H  E  Y  E  S  K  N  F  V  L  Y  F  *  P  T  W  E  *  A  M  K  I  I  K  G  K  G  *  F  V  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0075O22.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3939" stop="3800"/>
                    <exon start="3692" stop="3632"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VQTHSVKKGAGQNSGATKNGKTENQVVATKKREKKKPLPREEIAKAREEKRKALREATRKATMKNK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="3438" PGL_stop="3565"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3438" e_stop="3565"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.945"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.945">
            <gDNA_exon_boundary e_start="3438" e_stop="3565" e_length="128"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3438" stop="3565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U596812" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTTCTAAAGCAAAATCATACACGACCTCCAGCTCTCTTCATCTCAAAGTCATCAACCAATAACAAAAATATTACAACTAGCTGGCAGGTGCTAATAATACGCGAGGTGAGCTTTCACAAAATCACC</gDNA_template>
            <first_frame> V  F  *  S  K  I  I  H  D  L  Q  L  S  S  S  Q  S  H  Q  P  I  T  K  I  L  Q  L  A  G  R  C  *  *  Y  A  R  *  A  F  T  K  S   </first_frame>
            <second_frame>  F  S  K  A  K  S  Y  T  T  S  S  S  L  H  L  K  V  I  N  Q  *  Q  K  Y  Y  N  *  L  A  G  A  N  N  T  R  G  E  L  S  Q  N  H  </second_frame>
            <third_frame>   F  L  K  Q  N  H  T  R  P  P  A  L  F  I  S  K  S  S  T  N  N  K  N  I  T  T  S  W  Q  V  L  I  I  R  E  V  S  F  H  K  I  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLe0075O22.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="17309" PGL_stop="16365"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17309" e_stop="16674"/>
            <exon e_start="16477" e_stop="16365"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="17309" e_stop="16674" e_length="636"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="16673" i_stop="16478" i_length="196"/>
          </intron>
          <exon e_serial="2" e_score="0.965">
            <gDNA_exon_boundary e_start="16477" e_stop="16365" e_length="113"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17309" stop="16674"/>
              <exon start="16477" stop="16365"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U582423" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTAGGCACTTACTATATTTCTTGTAACACATCATAATCTCCAAAGACCTAAAGATTTACCTAAATTTGAGATAGAAAAATTGTAAAAATCTTTTGTTCAGTGACTCTGTATGTGTGATAACAATTATTAACAATGAAGAAATGTGAGTTGTGCAGTTCCATAGCAAGAGTTTATTGTGAATCAGATCAAGCCAGTCTTTGTTGGGATTGTGATGCCAGAGTTCACACAGCCAATTTCCTTGTAGCTAAACATTCAAGGATTCTTCTCTGTAATTCTTGCCAATCACTTACCCCATGGACTGGCTCTGGCTCTAAGCTTGGTCCCACTGTTTCTGTTTGCCAGAAATGTTTTCACAGAAATAATAATGATGGCGCAGATCAACATCTTAATGATCATAATGATACGGAAGAAGAAGAAGATGATGATGATGATACGGAAGAAGACGAAGATGATGGAAGCAGTGATGGTGATAATCAAGTTGTTCCTTTATCTTCTTCAACTTCAGATCAACCTAATCCTCCCTCATTGACTTCAAGCTCTTCTAGTAGTGAAGATTCCACTAACAGATTTAACAGAAGAAGTATAATTGGATTTTCACCTAACAGAACAGAGGAAAATATCCAATCCCATTATTGT : GGCATTACAAGACCTAAAGAGAAGATAGAAAGGAGTTCATGGAGATGGAGATAATCGGGATATTTACAGCTCAAAAGCTAATTCTGTTATCTGATCAATGTATGAATAAATCT</gDNA_template>
            <first_frame> V  G  T  Y  Y  I  S  C  N  T  S  *  S  P  K  T  *  R  F  T  *  I  *  D  R  K  I  V  K  I  F  C  S  V  T  L  Y  V  *  *  Q  L  L  T  M  K  K  C  E  L  C  S  S  I  A  R  V  Y  C  E  S  D  Q  A  S  L  C  W  D  C  D  A  R  V  H  T  A  N  F  L  V  A  K  H  S  R  I  L  L  C  N  S  C  Q  S  L  T  P  W  T  G  S  G  S  K  L  G  P  T  V  S  V  C  Q  K  C  F  H  R  N  N  N  D  G  A  D  Q  H  L  N  D  H  N  D  T  E  E  E  E  D  D  D  D  D  T  E  E  D  E  D  D  G  S  S  D  G  D  N  Q  V  V  P  L  S  S  S  T  S  D  Q  P  N  P  P  S  L  T  S  S  S  S  S  S  E  D  S  T  N  R  F  N  R  R  S  I  I  G  F  S  P  N  R  T  E  E  N  I  Q  S  H  Y  C  :  G  I  T  R  P  K  E  K  I  E  R  S  S  W  R  W  R  *  S  G  Y  L  Q  L  K  S  *  F  C  Y  L  I  N  V  *  I  N   </first_frame>
            <second_frame>  *  A  L  T  I  F  L  V  T  H  H  N  L  Q  R  P  K  D  L  P  K  F  E  I  E  K  L  *  K  S  F  V  Q  *  L  C  M  C  D  N  N  Y  *  Q  *  R  N  V  S  C  A  V  P  *  Q  E  F  I  V  N  Q  I  K  P  V  F  V  G  I  V  M  P  E  F  T  Q  P  I  S  L  *  L  N  I  Q  G  F  F  S  V  I  L  A  N  H  L  P  H  G  L  A  L  A  L  S  L  V  P  L  F  L  F  A  R  N  V  F  T  E  I  I  M  M  A  Q  I  N  I  L  M  I  I  M  I  R  K  K  K  K  M  M  M  M  I  R  K  K  T  K  M  M  E  A  V  M  V  I  I  K  L  F  L  Y  L  L  Q  L  Q  I  N  L  I  L  P  H  *  L  Q  A  L  L  V  V  K  I  P  L  T  D  L  T  E  E  V  *  L  D  F  H  L  T  E  Q  R  K  I  S  N  P  I  I  V :   A  L  Q  D  L  K  R  R  *  K  G  V  H  G  D  G  D  N  R  D  I  Y  S  S  K  A  N  S  V  I  *  S  M  Y  E  *  I  </second_frame>
            <third_frame>   R  H  L  L  Y  F  L  *  H  I  I  I  S  K  D  L  K  I  Y  L  N  L  R  *  K  N  C  K  N  L  L  F  S  D  S  V  C  V  I  T  I  I  N  N  E  E  M  *  V  V  Q  F  H  S  K  S  L  L  *  I  R  S  S  Q  S  L  L  G  L  *  C  Q  S  S  H  S  Q  F  P  C  S  *  T  F  K  D  S  S  L  *  F  L  P  I  T  Y  P  M  D  W  L  W  L  *  A  W  S  H  C  F  C  L  P  E  M  F  S  Q  K  *  *  *  W  R  R  S  T  S  *  *  S  *  *  Y  G  R  R  R  R  *  *  *  *  Y  G  R  R  R  R  *  W  K  Q  *  W  *  *  S  S  C  S  F  I  F  F  N  F  R  S  T  *  S  S  L  I  D  F  K  L  F  *  *  *  R  F  H  *  Q  I  *  Q  K  K  Y  N  W  I  F  T  *  Q  N  R  G  K  Y  P  I  P  L  L   : W  H  Y  K  T  *  R  E  D  R  K  E  F  M  E  M  E  I  I  G  I  F  T  A  Q  K  L  I  L  L  S  D  Q  C  M  N  K  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0075O22.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17189" stop="16674"/>
                    <exon start="16477" stop="16424"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>567</number_coding_nucleotides>
                  <number_encoded_amino_acids>189</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLLTMKKCELCSSIARVYCESDQASLCWDCDARVHTANFLVAKHSRILLCNSCQSLTPWTGSGSKLGPTVSVCQKCFHRNNNDGADQHLNDHNDTEEEEDDDDDTEEDEDDGSSDGDNQVVPLSSSTSDQPNPPSLTSSSSSSEDSTNRFNRRSIIGFSPNRTEENIQSHYCGITRPKEKIERSSWRWR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="23220" PGL_stop="22503"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23220" e_stop="22503"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="23220" e_stop="22503" e_length="718"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23220" stop="22503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U599304" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGAGGTGGAGGAGCAAGTTTTGGTGTTATTTTAGCATGGAAACTCAAACTTGTTCCTGTCCCGGAGAAAGTTACTGTTTTCAATGTTTACAAGAGGTTAGAGGGTAACCACAATCTCCTCACAAAATGGGAAAGCACCGCGCATCAATTACCTGATAAATTACTTATCAGAGTAATTATACAAAATGATGGAACAGAGAATGACAAGTACGTTGAAGTAATCTTTCAATCACTATACCTCGGACCTGTTGATGAGTTAATTCCATTGCTCAAAGAAAAATTCCCTGAATTTGATTTGGACAAAAAGGATTGCTTCCAAGAGCCTGTTGTGGATTGTAGTAACAGGCCTTGTATTAAGAAAGAATGTCGCGAATCTTCCTGGATTGGATCAGTCCTGTATTTCTATGGTAGGAGAACAAATGAATCACTTGAAGTTCTGCTAGAAAAGAGTATTCCAACACAGAAGAATTATTTCAAAGCCACATCTGATTTTGTGAAGACTCCAGTTCCGGAAAGTGGTTGGGAAATGGTTGAAAAAATGTTTTTGGAAGAAGAAAGACCTCAGATGATAATGGAGCCATTAGGTGGGATATTAGATGAAATATCAGAATCTGAAATTCCATTCCCTCATAGAAAGGGGAATTTGTATAATATTCAGTACTTGGTGAACTGGGGCGATAACAGCGAGAGTATATCAAGCCAGAAGATAAGATGGATG</gDNA_template>
            <first_frame> R  R  W  R  S  K  F  W  C  Y  F  S  M  E  T  Q  T  C  S  C  P  G  E  S  Y  C  F  Q  C  L  Q  E  V  R  G  *  P  Q  S  P  H  K  M  G  K  H  R  A  S  I  T  *  *  I  T  Y  Q  S  N  Y  T  K  *  W  N  R  E  *  Q  V  R  *  S  N  L  S  I  T  I  P  R  T  C  *  *  V  N  S  I  A  Q  R  K  I  P  *  I  *  F  G  Q  K  G  L  L  P  R  A  C  C  G  L  *  *  Q  A  L  Y  *  E  R  M  S  R  I  F  L  D  W  I  S  P  V  F  L  W  *  E  N  K  *  I  T  *  S  S  A  R  K  E  Y  S  N  T  E  E  L  F  Q  S  H  I  *  F  C  E  D  S  S  S  G  K  W  L  G  N  G  *  K  N  V  F  G  R  R  K  T  S  D  D  N  G  A  I  R  W  D  I  R  *  N  I  R  I  *  N  S  I  P  S  *  K  G  E  F  V  *  Y  S  V  L  G  E  L  G  R  *  Q  R  E  Y  I  K  P  E  D  K  M  D  </first_frame>
            <second_frame>  G  G  G  G  A  S  F  G  V  I  L  A  W  K  L  K  L  V  P  V  P  E  K  V  T  V  F  N  V  Y  K  R  L  E  G  N  H  N  L  L  T  K  W  E  S  T  A  H  Q  L  P  D  K  L  L  I  R  V  I  I  Q  N  D  G  T  E  N  D  K  Y  V  E  V  I  F  Q  S  L  Y  L  G  P  V  D  E  L  I  P  L  L  K  E  K  F  P  E  F  D  L  D  K  K  D  C  F  Q  E  P  V  V  D  C  S  N  R  P  C  I  K  K  E  C  R  E  S  S  W  I  G  S  V  L  Y  F  Y  G  R  R  T  N  E  S  L  E  V  L  L  E  K  S  I  P  T  Q  K  N  Y  F  K  A  T  S  D  F  V  K  T  P  V  P  E  S  G  W  E  M  V  E  K  M  F  L  E  E  E  R  P  Q  M  I  M  E  P  L  G  G  I  L  D  E  I  S  E  S  E  I  P  F  P  H  R  K  G  N  L  Y  N  I  Q  Y  L  V  N  W  G  D  N  S  E  S  I  S  S  Q  K  I  R  W  M </second_frame>
            <third_frame>   E  V  E  E  Q  V  L  V  L  F  *  H  G  N  S  N  L  F  L  S  R  R  K  L  L  F  S  M  F  T  R  G  *  R  V  T  T  I  S  S  Q  N  G  K  A  P  R  I  N  Y  L  I  N  Y  L  S  E  *  L  Y  K  M  M  E  Q  R  M  T  S  T  L  K  *  S  F  N  H  Y  T  S  D  L  L  M  S  *  F  H  C  S  K  K  N  S  L  N  L  I  W  T  K  R  I  A  S  K  S  L  L  W  I  V  V  T  G  L  V  L  R  K  N  V  A  N  L  P  G  L  D  Q  S  C  I  S  M  V  G  E  Q  M  N  H  L  K  F  C  *  K  R  V  F  Q  H  R  R  I  I  S  K  P  H  L  I  L  *  R  L  Q  F  R  K  V  V  G  K  W  L  K  K  C  F  W  K  K  K  D  L  R  *  *  W  S  H  *  V  G  Y  *  M  K  Y  Q  N  L  K  F  H  S  L  I  E  R  G  I  C  I  I  F  S  T  W  *  T  G  A  I  T  A  R  V  Y  Q  A  R  R  *  D  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0075O22.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23219" stop="22503"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>717</number_coding_nucleotides>
                  <number_encoded_amino_acids>239</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGGGASFGVILAWKLKLVPVPEKVTVFNVYKRLEGNHNLLTKWESTAHQLPDKLLIRVIIQNDGTENDKYVEVIFQSLYLGPVDELIPLLKEKFPEFDLDKKDCFQEPVVDCSNRPCIKKECRESSWIGSVLYFYGRRTNESLEVLLEKSIPTQKNYFKATSDFVKTPVPESGWEMVEKMFLEEERPQMIMEPLGGILDEISESEIPFPHRKGNLYNIQYLVNWGDNSESISSQKIRWM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="23913" PGL_stop="23226"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23913" e_stop="23226"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="23913" e_stop="23226" e_length="688"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23913" stop="23226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U569685" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAGCAATTTCTATTCCTCAAAAGAAAAAGAAAAATTATGGGTAACCTTCAAATCCTCTCTCTTTTAATCTTTTCCTTCTTTTTGTCAAAATGTTACTCCAAACAAGAAGATTTTGTTCAGTGTCTTTCTAAATACTCTAAAACCAACGTTACACACAACATTTACACCCCAAAATCTCCAACCTATTCATCTATCTTAGAATATGCTCAAAAAAATCCTAGATGGATGAATTCTTCACATCCCATTTTCATTGTTTCCCCTACAAAAGAATCACAAATCAAGCCGGTTATTCGCTGTGCAAAAAAACTAGGGTTGCAAATGAAAATAAAAAGTGGTGGCCATGACTATGAAGGCATATCTTTTCGCTCTAAAACCCCTTTTGTTATGCTTGATTTAAGCAATCTTAACAAAATCAAGATTGATTTAAATGAAGGAACAGTTTGGGTTCAAGCAGGGGCAACCCTCGGCCAGCTTTACTATGCAATTGCTAAAAAAAGTAATGTGCATGGTTTTGCTGGAGGTGTTTGTTTCAGTATTGGCACTGGAGGGATTATTAGTGGTGGAGGGTTAGGTACTTTGATGAGAAAATTCGGGCTTGCAGCTGATAATGTTGTAGATGCTCGCGTAATAGATGTAAATGGAAAAATTCTTAATAAGAACAAAATGAATGAAGATCTGTTTTGGGCA</gDNA_template>
            <first_frame> *  A  I  S  I  P  Q  K  K  K  K  N  Y  G  *  P  S  N  P  L  S  F  N  L  F  L  L  F  V  K  M  L  L  Q  T  R  R  F  C  S  V  S  F  *  I  L  *  N  Q  R  Y  T  Q  H  L  H  P  K  I  S  N  L  F  I  Y  L  R  I  C  S  K  K  S  *  M  D  E  F  F  T  S  H  F  H  C  F  P  Y  K  R  I  T  N  Q  A  G  Y  S  L  C  K  K  T  R  V  A  N  E  N  K  K  W  W  P  *  L  *  R  H  I  F  S  L  *  N  P  F  C  Y  A  *  F  K  Q  S  *  Q  N  Q  D  *  F  K  *  R  N  S  L  G  S  S  R  G  N  P  R  P  A  L  L  C  N  C  *  K  K  *  C  A  W  F  C  W  R  C  L  F  Q  Y  W  H  W  R  D  Y  *  W  W  R  V  R  Y  F  D  E  K  I  R  A  C  S  *  *  C  C  R  C  S  R  N  R  C  K  W  K  N  S  *  *  E  Q  N  E  *  R  S  V  L  G  </first_frame>
            <second_frame>  K  Q  F  L  F  L  K  R  K  R  K  I  M  G  N  L  Q  I  L  S  L  L  I  F  S  F  F  L  S  K  C  Y  S  K  Q  E  D  F  V  Q  C  L  S  K  Y  S  K  T  N  V  T  H  N  I  Y  T  P  K  S  P  T  Y  S  S  I  L  E  Y  A  Q  K  N  P  R  W  M  N  S  S  H  P  I  F  I  V  S  P  T  K  E  S  Q  I  K  P  V  I  R  C  A  K  K  L  G  L  Q  M  K  I  K  S  G  G  H  D  Y  E  G  I  S  F  R  S  K  T  P  F  V  M  L  D  L  S  N  L  N  K  I  K  I  D  L  N  E  G  T  V  W  V  Q  A  G  A  T  L  G  Q  L  Y  Y  A  I  A  K  K  S  N  V  H  G  F  A  G  G  V  C  F  S  I  G  T  G  G  I  I  S  G  G  G  L  G  T  L  M  R  K  F  G  L  A  A  D  N  V  V  D  A  R  V  I  D  V  N  G  K  I  L  N  K  N  K  M  N  E  D  L  F  W  A </second_frame>
            <third_frame>   S  N  F  Y  S  S  K  E  K  E  K  L  W  V  T  F  K  S  S  L  F  *  S  F  P  S  F  C  Q  N  V  T  P  N  K  K  I  L  F  S  V  F  L  N  T  L  K  P  T  L  H  T  T  F  T  P  Q  N  L  Q  P  I  H  L  S  *  N  M  L  K  K  I  L  D  G  *  I  L  H  I  P  F  S  L  F  P  L  Q  K  N  H  K  S  S  R  L  F  A  V  Q  K  N  *  G  C  K  *  K  *  K  V  V  A  M  T  M  K  A  Y  L  F  A  L  K  P  L  L  L  C  L  I  *  A  I  L  T  K  S  R  L  I  *  M  K  E  Q  F  G  F  K  Q  G  Q  P  S  A  S  F  T  M  Q  L  L  K  K  V  M  C  M  V  L  L  E  V  F  V  S  V  L  A  L  E  G  L  L  V  V  E  G  *  V  L  *  *  E  N  S  G  L  Q  L  I  M  L  *  M  L  A  *  *  M  *  M  E  K  F  L  I  R  T  K  *  M  K  I  C  F  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0075O22.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23912" stop="23226"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>687</number_coding_nucleotides>
                  <number_encoded_amino_acids>229</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KQFLFLKRKRKIMGNLQILSLLIFSFFLSKCYSKQEDFVQCLSKYSKTNVTHNIYTPKSPTYSSILEYAQKNPRWMNSSHPIFIVSPTKESQIKPVIRCAKKLGLQMKIKSGGHDYEGISFRSKTPFVMLDLSNLNKIKIDLNEGTVWVQAGATLGQLYYAIAKKSNVHGFAGGVCFSIGTGGIISGGGLGTLMRKFGLAADNVVDARVIDVNGKILNKNKMNEDLFWA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="32507" PGL_stop="33179"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32507" e_stop="33179"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="32507" e_stop="33179" e_length="673"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32507" stop="33179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U573887" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCAAAAACAACACTACACAAAACATTTACACCCCAAATTCTCCAACTTATTCATCTATCCTGGAATATGCCCAAAAAAAACCAAGATGGTTGAATTCTTCACATCCCAATTTCATTGCTTCCCCTAAAGAAGAATCAGAAATCAGGCCTATCATTCTTTGTAGTAAAAAAGTAGGCCTACAAATCAAGATCAAAAGCGGTGGTCACGACTATGAAGGCATATCTTATCGCTCTAAATCCCGGTTTGTTATGCTTGATTTAAGCAATCTTAACAAAATCAAGATTGATTTAAATGATGAAACAGTTTGGGTTCAAACAGGGGCGACCCTTGGCCAACTTTACTATGCAATTGCCAAGAAAAGTAAAGTTCATGCATTTCCAAGTGGTGTCTGTTTCAGTATTGGCACTGGTGGAATCATCAGTGGTGGTGGGATTGGCGCATTGATGAGGAAATTCGGCCTGTCAGCTGATAACGTTGTAGATGCACGTGTGATGGATGTGAATGGAAAAATTCTTGACAGGAAGATGAATGAAGATTTGTTTTGGGCGATAAGAGGAGGCGGAGGAGCAAGTTTCGGTGTTATTCTAGCATGGAAACTAAAATTGGTTCGTATTCCAGTGAAGCTTACTGTTTTCACGATTCGTAGGAAGTTAGAGGGTAACCTAAATCTCC</gDNA_template>
            <first_frame> S  K  N  N  T  T  Q  N  I  Y  T  P  N  S  P  T  Y  S  S  I  L  E  Y  A  Q  K  K  P  R  W  L  N  S  S  H  P  N  F  I  A  S  P  K  E  E  S  E  I  R  P  I  I  L  C  S  K  K  V  G  L  Q  I  K  I  K  S  G  G  H  D  Y  E  G  I  S  Y  R  S  K  S  R  F  V  M  L  D  L  S  N  L  N  K  I  K  I  D  L  N  D  E  T  V  W  V  Q  T  G  A  T  L  G  Q  L  Y  Y  A  I  A  K  K  S  K  V  H  A  F  P  S  G  V  C  F  S  I  G  T  G  G  I  I  S  G  G  G  I  G  A  L  M  R  K  F  G  L  S  A  D  N  V  V  D  A  R  V  M  D  V  N  G  K  I  L  D  R  K  M  N  E  D  L  F  W  A  I  R  G  G  G  G  A  S  F  G  V  I  L  A  W  K  L  K  L  V  R  I  P  V  K  L  T  V  F  T  I  R  R  K  L  E  G  N  L  N  L  </first_frame>
            <second_frame>  P  K  T  T  L  H  K  T  F  T  P  Q  I  L  Q  L  I  H  L  S  W  N  M  P  K  K  N  Q  D  G  *  I  L  H  I  P  I  S  L  L  P  L  K  K  N  Q  K  S  G  L  S  F  F  V  V  K  K  *  A  Y  K  S  R  S  K  A  V  V  T  T  M  K  A  Y  L  I  A  L  N  P  G  L  L  C  L  I  *  A  I  L  T  K  S  R  L  I  *  M  M  K  Q  F  G  F  K  Q  G  R  P  L  A  N  F  T  M  Q  L  P  R  K  V  K  F  M  H  F  Q  V  V  S  V  S  V  L  A  L  V  E  S  S  V  V  V  G  L  A  H  *  *  G  N  S  A  C  Q  L  I  T  L  *  M  H  V  *  W  M  *  M  E  K  F  L  T  G  R  *  M  K  I  C  F  G  R  *  E  E  A  E  E  Q  V  S  V  L  F  *  H  G  N  *  N  W  F  V  F  Q  *  S  L  L  F  S  R  F  V  G  S  *  R  V  T  *  I  S </second_frame>
            <third_frame>   Q  K  Q  H  Y  T  K  H  L  H  P  K  F  S  N  L  F  I  Y  P  G  I  C  P  K  K  T  K  M  V  E  F  F  T  S  Q  F  H  C  F  P  *  R  R  I  R  N  Q  A  Y  H  S  L  *  *  K  S  R  P  T  N  Q  D  Q  K  R  W  S  R  L  *  R  H  I  L  S  L  *  I  P  V  C  Y  A  *  F  K  Q  S  *  Q  N  Q  D  *  F  K  *  *  N  S  L  G  S  N  R  G  D  P  W  P  T  L  L  C  N  C  Q  E  K  *  S  S  C  I  S  K  W  C  L  F  Q  Y  W  H  W  W  N  H  Q  W  W  W  D  W  R  I  D  E  E  I  R  P  V  S  *  *  R  C  R  C  T  C  D  G  C  E  W  K  N  S  *  Q  E  D  E  *  R  F  V  L  G  D  K  R  R  R  R  S  K  F  R  C  Y  S  S  M  E  T  K  I  G  S  Y  S  S  E  A  Y  C  F  H  D  S  *  E  V  R  G  *  P  K  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0075O22.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32507" stop="33178"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>672</number_coding_nucleotides>
                  <number_encoded_amino_acids>224</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKNNTTQNIYTPNSPTYSSILEYAQKKPRWLNSSHPNFIASPKEESEIRPIILCSKKVGLQIKIKSGGHDYEGISYRSKSRFVMLDLSNLNKIKIDLNDETVWVQTGATLGQLYYAIAKKSKVHAFPSGVCFSIGTGGIISGGGIGALMRKFGLSADNVVDARVMDVNGKILDRKMNEDLFWAIRGGGGASFGVILAWKLKLVRIPVKLTVFTIRRKLEGNLNL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="34118" PGL_stop="33345"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34118" e_stop="33345"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="34118" e_stop="33345" e_length="774"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34118" stop="33345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U598539" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTATTTAAAACTGAAACTTCTTTGTAATATCATATTACAATGTGTGACAAGCACTAACTGGCCTGTCTAATAATATGAGACATGTGAGTAAAATGACTCTTCAATTTGTAGAATAAGGTGGAATACTTTGTTCATTTCTGAAGAAATTGTTGGGATCCACCTTACTCTTAACTTGAGCCAATCTCTCAAAGTTGCCACTATAATACTTTTGACCCCATATTTTGGCCTTGGAATAGCTGTAGTCCTCTGAATTTGTCCCAAAATCAAGGTCCCTGTAGTTCAGATAAGCAGTTCTTGGAGAATTTGAAACATATGGCTCCATTTCCTGGTAAAGTTTCCTCATCCATCCTATCTTCTGGCTTGATATAGTCTCACTGTTATCGCTCCAGTAGTTCAAGTACTGAATATTGTACAAATTCCCTTTTCTATGAGGGAATGGAATTTCGGATTCTGATATTTCATCAAATTTCGCACCCATTGGCTCAAAGATCATCTGGGGACTTTCTTCTTCCAAGAACAGTCTTTCTATCATTTCCCAACCACTTTCTGGAACTGGAGTCTTCACAAAATCAGACGTCCCTTTGTCGTAACTTTTCTTTGTTGGAATACTCTTTTCTAGCAATGTTTCAGGGGCATCAGTTAGTTTTCTGAAATAGAAATATAAGATTGACTGAATCCAGGAAACTTCATGGCATTCTTTCTCCGCACCAGTACTAGTAGTCTTTTGAAAGCAATCTTTTCGCTCCAAATTGAACTCAGGGAAGTACTGTT</gDNA_template>
            <first_frame> F  L  F  K  T  E  T  S  L  *  Y  H  I  T  M  C  D  K  H  *  L  A  C  L  I  I  *  D  M  *  V  K  *  L  F  N  L  *  N  K  V  E  Y  F  V  H  F  *  R  N  C  W  D  P  P  Y  S  *  L  E  P  I  S  Q  S  C  H  Y  N  T  F  D  P  I  F  W  P  W  N  S  C  S  P  L  N  L  S  Q  N  Q  G  P  C  S  S  D  K  Q  F  L  E  N  L  K  H  M  A  P  F  P  G  K  V  S  S  S  I  L  S  S  G  L  I  *  S  H  C  Y  R  S  S  S  S  S  T  E  Y  C  T  N  S  L  F  Y  E  G  M  E  F  R  I  L  I  F  H  Q  I  S  H  P  L  A  Q  R  S  S  G  D  F  L  L  P  R  T  V  F  L  S  F  P  N  H  F  L  E  L  E  S  S  Q  N  Q  T  S  L  C  R  N  F  S  L  L  E  Y  S  F  L  A  M  F  Q  G  H  Q  L  V  F  *  N  R  N  I  R  L  T  E  S  R  K  L  H  G  I  L  S  P  H  Q  Y  *  *  S  F  E  S  N  L  F  A  P  N  *  T  Q  G  S  T  V </first_frame>
            <second_frame>  F  Y  L  K  L  K  L  L  C  N  I  I  L  Q  C  V  T  S  T  N  W  P  V  *  *  Y  E  T  C  E  *  N  D  S  S  I  C  R  I  R  W  N  T  L  F  I  S  E  E  I  V  G  I  H  L  T  L  N  L  S  Q  S  L  K  V  A  T  I  I  L  L  T  P  Y  F  G  L  G  I  A  V  V  L  *  I  C  P  K  I  K  V  P  V  V  Q  I  S  S  S  W  R  I  *  N  I  W  L  H  F  L  V  K  F  P  H  P  S  Y  L  L  A  *  Y  S  L  T  V  I  A  P  V  V  Q  V  L  N  I  V  Q  I  P  F  S  M  R  E  W  N  F  G  F  *  Y  F  I  K  F  R  T  H  W  L  K  D  H  L  G  T  F  F  F  Q  E  Q  S  F  Y  H  F  P  T  T  F  W  N  W  S  L  H  K  I  R  R  P  F  V  V  T  F  L  C  W  N  T  L  F  *  Q  C  F  R  G  I  S  *  F  S  E  I  E  I  *  D  *  L  N  P  G  N  F  M  A  F  F  L  R  T  S  T  S  S  L  L  K  A  I  F  S  L  Q  I  E  L  R  E  V  L   </second_frame>
            <third_frame>   F  I  *  N  *  N  F  F  V  I  S  Y  Y  N  V  *  Q  A  L  T  G  L  S  N  N  M  R  H  V  S  K  M  T  L  Q  F  V  E  *  G  G  I  L  C  S  F  L  K  K  L  L  G  S  T  L  L  L  T  *  A  N  L  S  K  L  P  L  *  Y  F  *  P  H  I  L  A  L  E  *  L  *  S  S  E  F  V  P  K  S  R  S  L  *  F  R  *  A  V  L  G  E  F  E  T  Y  G  S  I  S  W  *  S  F  L  I  H  P  I  F  W  L  D  I  V  S  L  L  S  L  Q  *  F  K  Y  *  I  L  Y  K  F  P  F  L  *  G  N  G  I  S  D  S  D  I  S  S  N  F  A  P  I  G  S  K  I  I  W  G  L  S  S  S  K  N  S  L  S  I  I  S  Q  P  L  S  G  T  G  V  F  T  K  S  D  V  P  L  S  *  L  F  F  V  G  I  L  F  S  S  N  V  S  G  A  S  V  S  F  L  K  *  K  Y  K  I  D  *  I  Q  E  T  S  W  H  S  F  S  A  P  V  L  V  V  F  *  K  Q  S  F  R  S  K  L  N  S  G  K  Y  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0075O22.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33746" stop="33465"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SHCYRSSSSSTEYCTNSLFYEGMEFRILIFHQISHPLAQRSSGDFLLPRTVFLSFPNHFLELESSQNQTSLCRNFSLLEYSFLAMFQGHQLVF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0075O22.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33944" stop="33747"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LEPISQSCHYNTFDPIFWPWNSCSPLNLSQNQGPCSSDKQFLENLKHMAPFPGKVSSSILSSGLI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="44194" PGL_stop="41874"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44194" e_stop="43650"/>
            <exon e_start="43026" e_stop="41874"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.989" e_score="0.996"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="44194" e_stop="43650" e_length="545"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.989">
            <gDNA_intron_boundary i_start="43649" i_stop="43027" i_length="623"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="43026" e_stop="41874" e_length="1153"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44194" stop="43650"/>
              <exon start="43026" stop="41874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U565973" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGGAAAACACAACATTACAAACATACAATCCATTGATACAAAGATTCAAAAGTCTCTCCAGTATTCTTTCCCTCAACAAAAAGCAAAAAATATATCTTAGAAATATTAATAGATGGGTGCCAAAAAGGACTTCAATGTGAAGTTGATAAAAACAGAGGTGGTAGCAGCAATGTTGCCAATGCAAGAGCATTGGCTATCACAGTCCAATCTTGATTTGCTTTTACCTCCAGTGGATGTTGGAGTATTCTTATGTTATCAAAATCCCATTATTTCTGGAATATTGTCAAAAAATTGGTCATTTGATTCCATGGTCAATGTTCTTAAGGTGTCTTTGGGTGAGACTTTGGTTTCATACTATGCATTTGCTGGAGAGTTAATTCAAAACCTTGCTGGAGAGCCCGAAATTCTGTGTAACAATGCTGGAGTGGATTTCATAGAATCTTGGGCTGATGTAGAGCTTAAAGAGATCAACTTTCATAATCCGGATGAAAGCATAGAAGGCAAGCTTGTACCAAAGAAGAAGCATGGTGTACTAGCTGTTCAG : GTTACAGAACTAAAATGTGGAGGAGTAGTGGTGGGTTGTACATTTGATCATAGAGTTGCTGATGCTTACTCTTTCAACATGTTTCTTGTATCATGGGCTGAGTTAGCTCAGTCCAAACCACTCTCTCAGCTACCATCTTTCAGACGATCTTTTCTTACTCCGCGGTGTCCCTCTTTCTATGATCCTATAATTGATACCATGTACTTACCTATCTCAGCCCTGAAACAGGAAACCGCAAATATTGATCATGATGCTGATGAAATTATAAGTAGAATTTACTATGTTAAGGCCGAAGAAATCAGGCGCCTCCAATCACTAGCCAATTGTAACAACACAACGTTTACTAAACTTGAAGCATTCAGCGCTTTCCTATGGAAAACGATAGCCAGTGATACTAATAACAAGTTCAGGCTTGGAATTGTGGTTAATGGAAGAAGTAGATTAAGCAACGGAGATGAAGAACAAGCCAAGATACTAGAAGGGTATTTTGGGAATGTTCTTTCCATCCCATTTGGGGAAAAAAAAGTTGAGGAACTAAAAGAGAAATCATTGAGTTGGGTTGCAAGTGCAGTGCATGAGTTTCTTGAACATGTTGTGACAAGAGAACATTTTCTTGGGTTAATAAATTGGGTTGAGAATCATCGTCCGGAGCCAGCTCTAGCAAGAATTTATGCCACGAATGAAGATACACCTGCGCTGGTGGTGTCATCGGGGCAACAATTTCCGGTGAGGAAGATTGAGTTTGGATGGGGAGAGGCGGTGTTTGGTTCGTACCATTTTCCATGGGAAGGGAAATCAGGATATGTGATGCCAATGCCAAGTCCAAAAGGAAATGGAGATTGGATTGTTTACATGCATATGTTGAAGGGACAAATTGATTTGATTGAGGCTATTGCGTCAAATGTGTTCAAGCCCCTCACTGCAGATTATCTCAGTTTAAAGTAATCAATCAATGTTTGTGTATACATATGTACTCGGAGATCAGAAGGGGAGCTTTGGAGCAATGAAAACGTTGTTTGTTTCCGTTTGACTCATAGGTTGTGGGTTCAAGTATAGAAACAAATTACAATACTTGTGTTTATACAACACGACCTACTAACATAGGATGTTTTCTGCATAAAAACTACTTTAATATATATACTAAGCTTGTTTG</gDNA_template>
            <first_frame> M  E  N  T  T  L  Q  T  Y  N  P  L  I  Q  R  F  K  S  L  S  S  I  L  S  L  N  K  K  Q  K  I  Y  L  R  N  I  N  R  W  V  P  K  R  T  S  M  *  S  *  *  K  Q  R  W  *  Q  Q  C  C  Q  C  K  S  I  G  Y  H  S  P  I  L  I  C  F  Y  L  Q  W  M  L  E  Y  S  Y  V  I  K  I  P  L  F  L  E  Y  C  Q  K  I  G  H  L  I  P  W  S  M  F  L  R  C  L  W  V  R  L  W  F  H  T  M  H  L  L  E  S  *  F  K  T  L  L  E  S  P  K  F  C  V  T  M  L  E  W  I  S  *  N  L  G  L  M  *  S  L  K  R  S  T  F  I  I  R  M  K  A  *  K  A  S  L  Y  Q  R  R  S  M  V  Y  *  L  F  R :   L  Q  N  *  N  V  E  E  *  W  W  V  V  H  L  I  I  E  L  L  M  L  T  L  S  T  C  F  L  Y  H  G  L  S  *  L  S  P  N  H  S  L  S  Y  H  L  S  D  D  L  F  L  L  R  G  V  P  L  S  M  I  L  *  L  I  P  C  T  Y  L  S  Q  P  *  N  R  K  P  Q  I  L  I  M  M  L  M  K  L  *  V  E  F  T  M  L  R  P  K  K  S  G  A  S  N  H  *  P  I  V  T  T  Q  R  L  L  N  L  K  H  S  A  L  S  Y  G  K  R  *  P  V  I  L  I  T  S  S  G  L  E  L  W  L  M  E  E  V  D  *  A  T  E  M  K  N  K  P  R  Y  *  K  G  I  L  G  M  F  F  P  S  H  L  G  K  K  K  L  R  N  *  K  R  N  H  *  V  G  L  Q  V  Q  C  M  S  F  L  N  M  L  *  Q  E  N  I  F  L  G  *  *  I  G  L  R  I  I  V  R  S  Q  L  *  Q  E  F  M  P  R  M  K  I  H  L  R  W  W  C  H  R  G  N  N  F  R  *  G  R  L  S  L  D  G  E  R  R  C  L  V  R  T  I  F  H  G  K  G  N  Q  D  M  *  C  Q  C  Q  V  Q  K  E  M  E  I  G  L  F  T  C  I  C  *  R  D  K  L  I  *  L  R  L  L  R  Q  M  C  S  S  P  S  L  Q  I  I  S  V  *  S  N  Q  S  M  F  V  Y  T  Y  V  L  G  D  Q  K  G  S  F  G  A  M  K  T  L  F  V  S  V  *  L  I  G  C  G  F  K  Y  R  N  K  L  Q  Y  L  C  L  Y  N  T  T  Y  *  H  R  M  F  S  A  *  K  L  L  *  Y  I  Y  *  A  C  L </first_frame>
            <second_frame>  W  K  T  Q  H  Y  K  H  T  I  H  *  Y  K  D  S  K  V  S  P  V  F  F  P  S  T  K  S  K  K  Y  I  L  E  I  L  I  D  G  C  Q  K  G  L  Q  C  E  V  D  K  N  R  G  G  S  S  N  V  A  N  A  R  A  L  A  I  T  V  Q  S  *  F  A  F  T  S  S  G  C  W  S  I  L  M  L  S  K  S  H  Y  F  W  N  I  V  K  K  L  V  I  *  F  H  G  Q  C  S  *  G  V  F  G  *  D  F  G  F  I  L  C  I  C  W  R  V  N  S  K  P  C  W  R  A  R  N  S  V  *  Q  C  W  S  G  F  H  R  I  L  G  *  C  R  A  *  R  D  Q  L  S  *  S  G  *  K  H  R  R  Q  A  C  T  K  E  E  A  W  C  T  S  C  S   : G  Y  R  T  K  M  W  R  S  S  G  G  L  Y  I  *  S  *  S  C  *  C  L  L  F  Q  H  V  S  C  I  M  G  *  V  S  S  V  Q  T  T  L  S  A  T  I  F  Q  T  I  F  S  Y  S  A  V  S  L  F  L  *  S  Y  N  *  Y  H  V  L  T  Y  L  S  P  E  T  G  N  R  K  Y  *  S  *  C  *  *  N  Y  K  *  N  L  L  C  *  G  R  R  N  Q  A  P  P  I  T  S  Q  L  *  Q  H  N  V  Y  *  T  *  S  I  Q  R  F  P  M  E  N  D  S  Q  *  Y  *  *  Q  V  Q  A  W  N  C  G  *  W  K  K  *  I  K  Q  R  R  *  R  T  S  Q  D  T  R  R  V  F  W  E  C  S  F  H  P  I  W  G  K  K  S  *  G  T  K  R  E  I  I  E  L  G  C  K  C  S  A  *  V  S  *  T  C  C  D  K  R  T  F  S  W  V  N  K  L  G  *  E  S  S  S  G  A  S  S  S  K  N  L  C  H  E  *  R  Y  T  C  A  G  G  V  I  G  A  T  I  S  G  E  E  D  *  V  W  M  G  R  G  G  V  W  F  V  P  F  S  M  G  R  E  I  R  I  C  D  A  N  A  K  S  K  R  K  W  R  L  D  C  L  H  A  Y  V  E  G  T  N  *  F  D  *  G  Y  C  V  K  C  V  Q  A  P  H  C  R  L  S  Q  F  K  V  I  N  Q  C  L  C  I  H  M  Y  S  E  I  R  R  G  A  L  E  Q  *  K  R  C  L  F  P  F  D  S  *  V  V  G  S  S  I  E  T  N  Y  N  T  C  V  Y  T  T  R  P  T  N  I  G  C  F  L  H  K  N  Y  F  N  I  Y  T  K  L  V   </second_frame>
            <third_frame>   G  K  H  N  I  T  N  I  Q  S  I  D  T  K  I  Q  K  S  L  Q  Y  S  F  P  Q  Q  K  A  K  N  I  S  *  K  Y  *  *  M  G  A  K  K  D  F  N  V  K  L  I  K  T  E  V  V  A  A  M  L  P  M  Q  E  H  W  L  S  Q  S  N  L  D  L  L  L  P  P  V  D  V  G  V  F  L  C  Y  Q  N  P  I  I  S  G  I  L  S  K  N  W  S  F  D  S  M  V  N  V  L  K  V  S  L  G  E  T  L  V  S  Y  Y  A  F  A  G  E  L  I  Q  N  L  A  G  E  P  E  I  L  C  N  N  A  G  V  D  F  I  E  S  W  A  D  V  E  L  K  E  I  N  F  H  N  P  D  E  S  I  E  G  K  L  V  P  K  K  K  H  G  V  L  A  V  Q  :  V  T  E  L  K  C  G  G  V  V  V  G  C  T  F  D  H  R  V  A  D  A  Y  S  F  N  M  F  L  V  S  W  A  E  L  A  Q  S  K  P  L  S  Q  L  P  S  F  R  R  S  F  L  T  P  R  C  P  S  F  Y  D  P  I  I  D  T  M  Y  L  P  I  S  A  L  K  Q  E  T  A  N  I  D  H  D  A  D  E  I  I  S  R  I  Y  Y  V  K  A  E  E  I  R  R  L  Q  S  L  A  N  C  N  N  T  T  F  T  K  L  E  A  F  S  A  F  L  W  K  T  I  A  S  D  T  N  N  K  F  R  L  G  I  V  V  N  G  R  S  R  L  S  N  G  D  E  E  Q  A  K  I  L  E  G  Y  F  G  N  V  L  S  I  P  F  G  E  K  K  V  E  E  L  K  E  K  S  L  S  W  V  A  S  A  V  H  E  F  L  E  H  V  V  T  R  E  H  F  L  G  L  I  N  W  V  E  N  H  R  P  E  P  A  L  A  R  I  Y  A  T  N  E  D  T  P  A  L  V  V  S  S  G  Q  Q  F  P  V  R  K  I  E  F  G  W  G  E  A  V  F  G  S  Y  H  F  P  W  E  G  K  S  G  Y  V  M  P  M  P  S  P  K  G  N  G  D  W  I  V  Y  M  H  M  L  K  G  Q  I  D  L  I  E  A  I  A  S  N  V  F  K  P  L  T  A  D  Y  L  S  L  K  *  S  I  N  V  C  V  Y  I  C  T  R  R  S  E  G  E  L  W  S  N  E  N  V  V  C  F  R  L  T  H  R  L  W  V  Q  V  *  K  Q  I  T  I  L  V  F  I  Q  H  D  L  L  T  *  D  V  F  C  I  K  T  T  L  I  Y  I  L  S  L  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0075O22.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44081" stop="43650"/>
                    <exon start="43026" stop="42082"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1374</number_coding_nucleotides>
                  <number_encoded_amino_acids>458</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MGAKKDFNVKLIKTEVVAAMLPMQEHWLSQSNLDLLLPPVDVGVFLCYQNPIISGILSKNWSFDSMVNVLKVSLGETLVSYYAFAGELIQNLAGEPEILCNNAGVDFIESWADVELKEINFHNPDESIEGKLVPKKKHGVLAVQVTELKCGGVVVGCTFDHRVADAYSFNMFLVSWAELAQSKPLSQLPSFRRSFLTPRCPSFYDPIIDTMYLPISALKQETANIDHDADEIISRIYYVKAEEIRRLQSLANCNNTTFTKLEAFSAFLWKTIASDTNNKFRLGIVVNGRSRLSNGDEEQAKILEGYFGNVLSIPFGEKKVEELKEKSLSWVASAVHEFLEHVVTREHFLGLINWVENHRPEPALARIYATNEDTPALVVSSGQQFPVRKIEFGWGEAVFGSYHFPWEGKSGYVMPMPSPKGNGDWIVYMHMLKGQIDLIEAIASNVFKPLTADYLSLK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="62278" PGL_stop="59830"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62278" e_stop="61881"/>
            <exon e_start="61018" e_stop="60821"/>
            <exon e_start="60538" e_stop="59830"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.630" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.983" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62278" e_stop="61881" e_length="398"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.630">
            <gDNA_intron_boundary i_start="61880" i_stop="61019" i_length="862"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="61018" e_stop="60821" e_length="198"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.983">
            <gDNA_intron_boundary i_start="60820" i_stop="60539" i_length="282"/>
          </intron>
          <exon e_serial="3" e_score="0.996">
            <gDNA_exon_boundary e_start="60538" e_stop="59830" e_length="709"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62278" stop="61881"/>
              <exon start="61018" stop="60821"/>
              <exon start="60538" stop="59830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U581155" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCCCTATCGAAAGCCTTTAATTTGTTTCCTCGATAGACATTTAAATTAAGTGATGGGTTTTCGTTTGAGTCATTTGAGTCTTGCATTGAGTTTTGTGGCACTTGCACTTGCAGGTGTTGCTATTTATAGAAATACTTATGAAGCCATCATCATGAAAAACGGTTCACTCCTCAAAAATGTTTCTCCAGATTTCGATTCGTTGGAATCAGGCGTAGCCAGTATTTTAACCTTAAATAATAATAAGAAGAGAAATTCAGACAAGTACTTGAGACAGCAACTAACTCCGGAGGCATGCGTTTTCTCAGCTGTACGAGCAGTTGTGGACAGTGCTATTGATGCAGAAACTCGCATGGGAGCTTCTCTCATTCGTCTCCACTTTCATGACTGCTTCGTTGAT : GGTTGTGATGGAGGTATTCTGCTAGATGATATTAATGGAACATTTACAGGGGAACAAAACTCACCACCCAACGCCAACTCAGCCAGAGGTTATGAAGTAATAGCACAAGCTAAACAAAGTGTCATAAACACATGCCCCAACGTATCTGTATCTTGTGCCGACATATTAGCTATTGCTGCTCGTGATTCTGTTGCTAAA : TTAGGAGGACAAACTTATAGCGTTGCATTAGGGAGAAGCGATGCTAGAACTGCCAACTTTAGTGGTGCTATAAATCAACTTCCAGCTCCATTCGACAACCTAACAGTCCAAATACAGAAATTCAGCGACAAAAATTTCACCCTCCGTGAAATGGTTGCACTAGCTGGTGCACACACGGTAGGTTTCGCCAGGTGTTCCACAGTTTGCACCAGCGGTAACGTTAATCCTGCCGCACAACTCCAATGCAACTGCTCCGCCACGCTAACTGATTCTGATTTGCAACAATTGGATACTACTCCTACTATGTTCGACAAAGTTTACTACGATAACTTAAACAGCAACCAAGGCATAATGTTTTCAGATCAAGTTTTGACCGGGGATGCTACAACTGCTGGTTTTGTAACGGATTATAGCAACGATGTGAACGTTTTCCTTGGAGATTTTGCTGCTGCCATGATCAAGATGGGAGACTTGCCCCCCTCCGCCGGCGCTCAATTGGAAATTCGTGATGTTTGTAGCAGGGTTAATCCCACTTCAGTGGCTTCTATGTGAAAAATTCGGAAATTTTAATTAACTTATCTCGCGACTAGTTGCTTCATGTTTTCTTCAAAATAAAAGAATCACTGGCTCCAGAATGTGGTTTGGTTTTGGTATTTGTTTTGTAATCCATCCTATTTTATATGAATATTGTTTTCCTTGTGTGCTAATG</gDNA_template>
            <first_frame> I  P  I  E  S  L  *  F  V  S  S  I  D  I  *  I  K  *  W  V  F  V  *  V  I  *  V  L  H  *  V  L  W  H  L  H  L  Q  V  L  L  F  I  E  I  L  M  K  P  S  S  *  K  T  V  H  S  S  K  M  F  L  Q  I  S  I  R  W  N  Q  A  *  P  V  F  *  P  *  I  I  I  R  R  E  I  Q  T  S  T  *  D  S  N  *  L  R  R  H  A  F  S  Q  L  Y  E  Q  L  W  T  V  L  L  M  Q  K  L  A  W  E  L  L  S  F  V  S  T  F  M  T  A  S  L  M :   V  V  M  E  V  F  C  *  M  I  L  M  E  H  L  Q  G  N  K  T  H  H  P  T  P  T  Q  P  E  V  M  K  *  *  H  K  L  N  K  V  S  *  T  H  A  P  T  Y  L  Y  L  V  P  T  Y  *  L  L  L  L  V  I  L  L  L  N :   *  E  D  K  L  I  A  L  H  *  G  E  A  M  L  E  L  P  T  L  V  V  L  *  I  N  F  Q  L  H  S  T  T  *  Q  S  K  Y  R  N  S  A  T  K  I  S  P  S  V  K  W  L  H  *  L  V  H  T  R  *  V  S  P  G  V  P  Q  F  A  P  A  V  T  L  I  L  P  H  N  S  N  A  T  A  P  P  R  *  L  I  L  I  C  N  N  W  I  L  L  L  L  C  S  T  K  F  T  T  I  T  *  T  A  T  K  A  *  C  F  Q  I  K  F  *  P  G  M  L  Q  L  L  V  L  *  R  I  I  A  T  M  *  T  F  S  L  E  I  L  L  L  P  *  S  R  W  E  T  C  P  P  P  P  A  L  N  W  K  F  V  M  F  V  A  G  L  I  P  L  Q  W  L  L  C  E  K  F  G  N  F  N  *  L  I  S  R  L  V  A  S  C  F  L  Q  N  K  R  I  T  G  S  R  M  W  F  G  F  G  I  C  F  V  I  H  P  I  L  Y  E  Y  C  F  P  C  V  L  M </first_frame>
            <second_frame>  S  L  S  K  A  F  N  L  F  P  R  *  T  F  K  L  S  D  G  F  S  F  E  S  F  E  S  C  I  E  F  C  G  T  C  T  C  R  C  C  Y  L  *  K  Y  L  *  S  H  H  H  E  K  R  F  T  P  Q  K  C  F  S  R  F  R  F  V  G  I  R  R  S  Q  Y  F  N  L  K  *  *  *  E  E  K  F  R  Q  V  L  E  T  A  T  N  S  G  G  M  R  F  L  S  C  T  S  S  C  G  Q  C  Y  *  C  R  N  S  H  G  S  F  S  H  S  S  P  L  S  *  L  L  R  *   : W  L  *  W  R  Y  S  A  R  *  Y  *  W  N  I  Y  R  G  T  K  L  T  T  Q  R  Q  L  S  Q  R  L  *  S  N  S  T  S  *  T  K  C  H  K  H  M  P  Q  R  I  C  I  L  C  R  H  I  S  Y  C  C  S  *  F  C  C  *   : I  R  R  T  N  L  *  R  C  I  R  E  K  R  C  *  N  C  Q  L  *  W  C  Y  K  S  T  S  S  S  I  R  Q  P  N  S  P  N  T  E  I  Q  R  Q  K  F  H  P  P  *  N  G  C  T  S  W  C  T  H  G  R  F  R  Q  V  F  H  S  L  H  Q  R  *  R  *  S  C  R  T  T  P  M  Q  L  L  R  H  A  N  *  F  *  F  A  T  I  G  Y  Y  S  Y  Y  V  R  Q  S  L  L  R  *  L  K  Q  Q  P  R  H  N  V  F  R  S  S  F  D  R  G  C  Y  N  C  W  F  C  N  G  L  *  Q  R  C  E  R  F  P  W  R  F  C  C  C  H  D  Q  D  G  R  L  A  P  L  R  R  R  S  I  G  N  S  *  C  L  *  Q  G  *  S  H  F  S  G  F  Y  V  K  N  S  E  I  L  I  N  L  S  R  D  *  L  L  H  V  F  F  K  I  K  E  S  L  A  P  E  C  G  L  V  L  V  F  V  L  *  S  I  L  F  Y  M  N  I  V  F  L  V  C  *   </second_frame>
            <third_frame>   P  Y  R  K  P  L  I  C  F  L  D  R  H  L  N  *  V  M  G  F  R  L  S  H  L  S  L  A  L  S  F  V  A  L  A  L  A  G  V  A  I  Y  R  N  T  Y  E  A  I  I  M  K  N  G  S  L  L  K  N  V  S  P  D  F  D  S  L  E  S  G  V  A  S  I  L  T  L  N  N  N  K  K  R  N  S  D  K  Y  L  R  Q  Q  L  T  P  E  A  C  V  F  S  A  V  R  A  V  V  D  S  A  I  D  A  E  T  R  M  G  A  S  L  I  R  L  H  F  H  D  C  F  V  D  :  G  C  D  G  G  I  L  L  D  D  I  N  G  T  F  T  G  E  Q  N  S  P  P  N  A  N  S  A  R  G  Y  E  V  I  A  Q  A  K  Q  S  V  I  N  T  C  P  N  V  S  V  S  C  A  D  I  L  A  I  A  A  R  D  S  V  A  K  :  L  G  G  Q  T  Y  S  V  A  L  G  R  S  D  A  R  T  A  N  F  S  G  A  I  N  Q  L  P  A  P  F  D  N  L  T  V  Q  I  Q  K  F  S  D  K  N  F  T  L  R  E  M  V  A  L  A  G  A  H  T  V  G  F  A  R  C  S  T  V  C  T  S  G  N  V  N  P  A  A  Q  L  Q  C  N  C  S  A  T  L  T  D  S  D  L  Q  Q  L  D  T  T  P  T  M  F  D  K  V  Y  Y  D  N  L  N  S  N  Q  G  I  M  F  S  D  Q  V  L  T  G  D  A  T  T  A  G  F  V  T  D  Y  S  N  D  V  N  V  F  L  G  D  F  A  A  A  M  I  K  M  G  D  L  P  P  S  A  G  A  Q  L  E  I  R  D  V  C  S  R  V  N  P  T  S  V  A  S  M  *  K  I  R  K  F  *  L  T  Y  L  A  T  S  C  F  M  F  S  S  K  *  K  N  H  W  L  Q  N  V  V  W  F  W  Y  L  F  C  N  P  S  Y  F  I  *  I  L  F  S  L  C  A  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0075O22.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62228" stop="61881"/>
                    <exon start="61018" stop="60821"/>
                    <exon start="60538" stop="59987"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1095</number_coding_nucleotides>
                  <number_encoded_amino_acids>365</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VMGFRLSHLSLALSFVALALAGVAIYRNTYEAIIMKNGSLLKNVSPDFDSLESGVASILTLNNNKKRNSDKYLRQQLTPEACVFSAVRAVVDSAIDAETRMGASLIRLHFHDCFVDGCDGGILLDDINGTFTGEQNSPPNANSARGYEVIAQAKQSVINTCPNVSVSCADILAIAARDSVAKLGGQTYSVALGRSDARTANFSGAINQLPAPFDNLTVQIQKFSDKNFTLREMVALAGAHTVGFARCSTVCTSGNVNPAAQLQCNCSATLTDSDLQQLDTTPTMFDKVYYDNLNSNQGIMFSDQVLTGDATTAGFVTDYSNDVNVFLGDFAAAMIKMGDLPPSAGAQLEIRDVCSRVNPTSVASM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="62260" e_stop="61587"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="62260" e_stop="61587" e_length="674"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62260" stop="61587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590488" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAATTTGTTTCCTCGATAGACATTTAAATTAAGTGATGGGTTTTCGTTTGAGTCATTTGAGTCTTGCATTGAGTTTTGTGGCACTTGCACTTGCAGGTGTTGCTATTTATAGAAATACTTATGAAGCCATCATCATGAAAAACGGTTCACTCCTCAAAAATGTTTCTCCAGATTTCGATTCGTTGGAATCAGGCGTAGCCAGTATTTTAACCTTAAATAATAATAAGAAGAGAAATTCAGACAAGTACTTGAGACAGCAACTAACTCCGGAGGCATGCGTTTTCTCAGCTGTACGAGCAGTTGTGGACAGTGCTATTGATGCAGAAACTCGCATGGGAGCTTCTCTCATTCGTCTCCACTTTCATGACTGCTTCGTTGATGTAAATATATATTTCCTTCGCTCTTTTTTTATCGTATTTGATTATGCACAAAATTTTATTTGAAGTCACTTAAATATTTTATGCTTGTTCAAACAAATTTGAAAATTCTTTCAGTTTTTCCTGAACTCACAATGCATGCAGTCAATTACTTTACTAGGGAAAATGCACAAGTACATTCTCAACCTATGTCCGAAATTACAGAGACACACTTATATTATACTAAGGTTCTATTACTCCCCTGAACTTATTTTATAAGTAATATTCTACCTAGCTTGAAAAAAAAGTCAACCTGCG</gDNA_template>
            <first_frame> *  F  V  S  S  I  D  I  *  I  K  *  W  V  F  V  *  V  I  *  V  L  H  *  V  L  W  H  L  H  L  Q  V  L  L  F  I  E  I  L  M  K  P  S  S  *  K  T  V  H  S  S  K  M  F  L  Q  I  S  I  R  W  N  Q  A  *  P  V  F  *  P  *  I  I  I  R  R  E  I  Q  T  S  T  *  D  S  N  *  L  R  R  H  A  F  S  Q  L  Y  E  Q  L  W  T  V  L  L  M  Q  K  L  A  W  E  L  L  S  F  V  S  T  F  M  T  A  S  L  M  *  I  Y  I  S  F  A  L  F  L  S  Y  L  I  M  H  K  I  L  F  E  V  T  *  I  F  Y  A  C  S  N  K  F  E  N  S  F  S  F  S  *  T  H  N  A  C  S  Q  L  L  Y  *  G  K  C  T  S  T  F  S  T  Y  V  R  N  Y  R  D  T  L  I  L  Y  *  G  S  I  T  P  L  N  L  F  Y  K  *  Y  S  T  *  L  E  K  K  V  N  L   </first_frame>
            <second_frame>  N  L  F  P  R  *  T  F  K  L  S  D  G  F  S  F  E  S  F  E  S  C  I  E  F  C  G  T  C  T  C  R  C  C  Y  L  *  K  Y  L  *  S  H  H  H  E  K  R  F  T  P  Q  K  C  F  S  R  F  R  F  V  G  I  R  R  S  Q  Y  F  N  L  K  *  *  *  E  E  K  F  R  Q  V  L  E  T  A  T  N  S  G  G  M  R  F  L  S  C  T  S  S  C  G  Q  C  Y  *  C  R  N  S  H  G  S  F  S  H  S  S  P  L  S  *  L  L  R  *  C  K  Y  I  F  P  S  L  F  F  Y  R  I  *  L  C  T  K  F  Y  L  K  S  L  K  Y  F  M  L  V  Q  T  N  L  K  I  L  S  V  F  P  E  L  T  M  H  A  V  N  Y  F  T  R  E  N  A  Q  V  H  S  Q  P  M  S  E  I  T  E  T  H  L  Y  Y  T  K  V  L  L  L  P  *  T  Y  F  I  S  N  I  L  P  S  L  K  K  K  S  T  C  </second_frame>
            <third_frame>   I  C  F  L  D  R  H  L  N  *  V  M  G  F  R  L  S  H  L  S  L  A  L  S  F  V  A  L  A  L  A  G  V  A  I  Y  R  N  T  Y  E  A  I  I  M  K  N  G  S  L  L  K  N  V  S  P  D  F  D  S  L  E  S  G  V  A  S  I  L  T  L  N  N  N  K  K  R  N  S  D  K  Y  L  R  Q  Q  L  T  P  E  A  C  V  F  S  A  V  R  A  V  V  D  S  A  I  D  A  E  T  R  M  G  A  S  L  I  R  L  H  F  H  D  C  F  V  D  V  N  I  Y  F  L  R  S  F  F  I  V  F  D  Y  A  Q  N  F  I  *  S  H  L  N  I  L  C  L  F  K  Q  I  *  K  F  F  Q  F  F  L  N  S  Q  C  M  Q  S  I  T  L  L  G  K  M  H  K  Y  I  L  N  L  C  P  K  L  Q  R  H  T  Y  I  I  L  R  F  Y  Y  S  P  E  L  I  L  *  V  I  F  Y  L  A  *  K  K  S  Q  P  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0075O22.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62228" stop="61818"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>408</number_coding_nucleotides>
                  <number_encoded_amino_acids>136</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VMGFRLSHLSLALSFVALALAGVAIYRNTYEAIIMKNGSLLKNVSPDFDSLESGVASILTLNNNKKRNSDKYLRQQLTPEACVFSAVRAVVDSAIDAETRMGASLIRLHFHDCFVDVNIYFLRSFFIVFDYAQNFI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0075O22.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61839" stop="61639"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LCTKFYLKSLKYFMLVQTNLKILSVFPELTMHAVNYFTRENAQVHSQPMSEITETHLYYTKVLLLP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="66607" PGL_stop="64267"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66607" e_stop="66227"/>
            <exon e_start="65230" e_stop="65033"/>
            <exon e_start="64907" e_stop="64267"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.995" e_score="0.992"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="66607" e_stop="66227" e_length="381"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.995">
            <gDNA_intron_boundary i_start="66226" i_stop="65231" i_length="996"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="65230" e_stop="65033" e_length="198"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="65032" i_stop="64908" i_length="125"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="64907" e_stop="64267" e_length="641"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66607" stop="66227"/>
              <exon start="65230" stop="65033"/>
              <exon start="64907" stop="64267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U580369" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTTTCTTCCAAATAGACATTTAATAATTTCTTTAAGTGATGGGTTTTCGTTTGAGCCTTTTGAGCCTTGCGGTGAGCCTTGTGGCACTTGCACTCGCAGGTGTTGCCATTTATAGAAATACTTATGAGGCCATGATCATGAATAACGGATCACTCCTCCAAAATATCTCTCCAGATATCGATTCGTTGGAATCAGGCGAAGTCAGTATTTTAATTTTAAATGATAAGAAGAAAAATTCAGACAAATATTTGAGTCAGCAATTAACTCAGGAGTCTTGCGTTTTCTCAGCTGTGAAAGGAGTTGTGGACAGTGCCATTGATAATGAAACGCGCATGGGAGCTTCTCTCATTCGTCTACATTTCCATGACTGCTTTGTTGAT : GGTTGTGATGGAGGTATTCTGCTAGATGATATTAATGGAACATTCACCGGGGAACAAAACTCACCACCCAACAACAACTCAGTCAGAGGCTTTGAAGTGATAGCACAAGCTAAACAAAGTGTTGTAGATTCATGCCCCAACATATCTGTATCTTGTGCTGATATTTTAGCTATTGCTGCTCGTGATTCCCTTGCTAAA : TTAGGAGGACAAACTTATACCGTTGCACTAGGGAGAAGCGATGCTACAACAGCCAACTTTAGTGGTGCTATAAATCAACTTCCAGCTCCATCCGACAACCTAACTGTTCAAATACAGAAATTCAGCGACAAAAATTTCACTGTCCGTGAAATGGTGGCACTAGCTGGCGCGCACACGGTAGGTTTCGCCAGGTGTTCCACAGTTTGCACCAGCGGTAACGTTAATCCTGCCGCACAACTCCAATGCAACTGCTCCGCCACGCTAACTGATTCCGATTTGCAACAATTGGATACAACTCCTGCTGTGTTCGACAAAGTTTACTATGATAACTTAAACAACAACCAAGGGATAATGTTCTCGGATCAAGTTTTGACTGGGAATACTACAACTGCTGGTTTTGTAACCACTTATAGCAACAATGTTACTGTTTTTCTTGAAGATTTTGCTGCTGCTATGATCAAAATGGGGAATTTACCTCCCTCCGCTGGCGCTCAATTGGAAATTCGCGATGTTTGCAGCAGGGTTAATCCCACTTCTGTGGCTTCTATGTGAAAAATTTCGGAAATTTTAAGTAGCTTTTATCTTACTATTTGTCGCATCATGTTTTCATCTTTTTCAGTATTGATGCAATAATATATATG</gDNA_template>
            <first_frame> C  F  F  Q  I  D  I  *  *  F  L  *  V  M  G  F  R  L  S  L  L  S  L  A  V  S  L  V  A  L  A  L  A  G  V  A  I  Y  R  N  T  Y  E  A  M  I  M  N  N  G  S  L  L  Q  N  I  S  P  D  I  D  S  L  E  S  G  E  V  S  I  L  I  L  N  D  K  K  K  N  S  D  K  Y  L  S  Q  Q  L  T  Q  E  S  C  V  F  S  A  V  K  G  V  V  D  S  A  I  D  N  E  T  R  M  G  A  S  L  I  R  L  H  F  H  D  C  F  V  D  :  G  C  D  G  G  I  L  L  D  D  I  N  G  T  F  T  G  E  Q  N  S  P  P  N  N  N  S  V  R  G  F  E  V  I  A  Q  A  K  Q  S  V  V  D  S  C  P  N  I  S  V  S  C  A  D  I  L  A  I  A  A  R  D  S  L  A  K  :  L  G  G  Q  T  Y  T  V  A  L  G  R  S  D  A  T  T  A  N  F  S  G  A  I  N  Q  L  P  A  P  S  D  N  L  T  V  Q  I  Q  K  F  S  D  K  N  F  T  V  R  E  M  V  A  L  A  G  A  H  T  V  G  F  A  R  C  S  T  V  C  T  S  G  N  V  N  P  A  A  Q  L  Q  C  N  C  S  A  T  L  T  D  S  D  L  Q  Q  L  D  T  T  P  A  V  F  D  K  V  Y  Y  D  N  L  N  N  N  Q  G  I  M  F  S  D  Q  V  L  T  G  N  T  T  T  A  G  F  V  T  T  Y  S  N  N  V  T  V  F  L  E  D  F  A  A  A  M  I  K  M  G  N  L  P  P  S  A  G  A  Q  L  E  I  R  D  V  C  S  R  V  N  P  T  S  V  A  S  M  *  K  I  S  E  I  L  S  S  F  Y  L  T  I  C  R  I  M  F  S  S  F  S  V  L  M  Q  *  Y  I   </first_frame>
            <second_frame>  V  S  S  K  *  T  F  N  N  F  F  K  *  W  V  F  V  *  A  F  *  A  L  R  *  A  L  W  H  L  H  S  Q  V  L  P  F  I  E  I  L  M  R  P  *  S  *  I  T  D  H  S  S  K  I  S  L  Q  I  S  I  R  W  N  Q  A  K  S  V  F  *  F  *  M  I  R  R  K  I  Q  T  N  I  *  V  S  N  *  L  R  S  L  A  F  S  Q  L  *  K  E  L  W  T  V  P  L  I  M  K  R  A  W  E  L  L  S  F  V  Y  I  S  M  T  A  L  L  M :   V  V  M  E  V  F  C  *  M  I  L  M  E  H  S  P  G  N  K  T  H  H  P  T  T  T  Q  S  E  A  L  K  *  *  H  K  L  N  K  V  L  *  I  H  A  P  T  Y  L  Y  L  V  L  I  F  *  L  L  L  L  V  I  P  L  L  N :   *  E  D  K  L  I  P  L  H  *  G  E  A  M  L  Q  Q  P  T  L  V  V  L  *  I  N  F  Q  L  H  P  T  T  *  L  F  K  Y  R  N  S  A  T  K  I  S  L  S  V  K  W  W  H  *  L  A  R  T  R  *  V  S  P  G  V  P  Q  F  A  P  A  V  T  L  I  L  P  H  N  S  N  A  T  A  P  P  R  *  L  I  P  I  C  N  N  W  I  Q  L  L  L  C  S  T  K  F  T  M  I  T  *  T  T  T  K  G  *  C  S  R  I  K  F  *  L  G  I  L  Q  L  L  V  L  *  P  L  I  A  T  M  L  L  F  F  L  K  I  L  L  L  L  *  S  K  W  G  I  Y  L  P  P  L  A  L  N  W  K  F  A  M  F  A  A  G  L  I  P  L  L  W  L  L  C  E  K  F  R  K  F  *  V  A  F  I  L  L  F  V  A  S  C  F  H  L  F  Q  Y  *  C  N  N  I  Y  </second_frame>
            <third_frame>   F  L  P  N  R  H  L  I  I  S  L  S  D  G  F  S  F  E  P  F  E  P  C  G  E  P  C  G  T  C  T  R  R  C  C  H  L  *  K  Y  L  *  G  H  D  H  E  *  R  I  T  P  P  K  Y  L  S  R  Y  R  F  V  G  I  R  R  S  Q  Y  F  N  F  K  *  *  E  E  K  F  R  Q  I  F  E  S  A  I  N  S  G  V  L  R  F  L  S  C  E  R  S  C  G  Q  C  H  *  *  *  N  A  H  G  S  F  S  H  S  S  T  F  P  *  L  L  C  *   : W  L  *  W  R  Y  S  A  R  *  Y  *  W  N  I  H  R  G  T  K  L  T  T  Q  Q  Q  L  S  Q  R  L  *  S  D  S  T  S  *  T  K  C  C  R  F  M  P  Q  H  I  C  I  L  C  *  Y  F  S  Y  C  C  S  *  F  P  C  *   : I  R  R  T  N  L  Y  R  C  T  R  E  K  R  C  Y  N  S  Q  L  *  W  C  Y  K  S  T  S  S  S  I  R  Q  P  N  C  S  N  T  E  I  Q  R  Q  K  F  H  C  P  *  N  G  G  T  S  W  R  A  H  G  R  F  R  Q  V  F  H  S  L  H  Q  R  *  R  *  S  C  R  T  T  P  M  Q  L  L  R  H  A  N  *  F  R  F  A  T  I  G  Y  N  S  C  C  V  R  Q  S  L  L  *  *  L  K  Q  Q  P  R  D  N  V  L  G  S  S  F  D  W  E  Y  Y  N  C  W  F  C  N  H  L  *  Q  Q  C  Y  C  F  S  *  R  F  C  C  C  Y  D  Q  N  G  E  F  T  S  L  R  W  R  S  I  G  N  S  R  C  L  Q  Q  G  *  S  H  F  C  G  F  Y  V  K  N  F  G  N  F  K  *  L  L  S  Y  Y  L  S  H  H  V  F  I  F  F  S  I  D  A  I  I  Y  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0075O22.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66571" stop="66227"/>
                    <exon start="65230" stop="65033"/>
                    <exon start="64907" stop="64356"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1092</number_coding_nucleotides>
                  <number_encoded_amino_acids>364</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VMGFRLSLLSLAVSLVALALAGVAIYRNTYEAMIMNNGSLLQNISPDIDSLESGEVSILILNDKKKNSDKYLSQQLTQESCVFSAVKGVVDSAIDNETRMGASLIRLHFHDCFVDGCDGGILLDDINGTFTGEQNSPPNNNSVRGFEVIAQAKQSVVDSCPNISVSCADILAIAARDSLAKLGGQTYTVALGRSDATTANFSGAINQLPAPSDNLTVQIQKFSDKNFTVREMVALAGAHTVGFARCSTVCTSGNVNPAAQLQCNCSATLTDSDLQQLDTTPAVFDKVYYDNLNNNQGIMFSDQVLTGNTTTAGFVTTYSNNVTVFLEDFAAAMIKMGNLPPSAGAQLEIRDVCSRVNPTSVASM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="75617" PGL_stop="75047"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75617" e_stop="75047"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="75617" e_stop="75047" e_length="571"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75617" stop="75047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U597836" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAAACATCGATAATATCCATTTTCGAAAATTCATCGTGTACGTTAATTAATTTTTAAGGCATGGCTACATTGGGACGTGACGTTGTGTTTGAGGATTTTTTTCCATCAATGATGGAGAAACTAGGGTCAGAAGGGTTCTTGAAGGAGCTAAAGAACGGGTTCCGGGCATTGATGGATAAGGAGAGGGAAGTGATCACGTTTGAGAGCTTGAAGAGGAATTCGGCGTTGTTAGGGTTAGAAGGAATGAGTGATGATGAACTAATGTGTATGTTGAGGGAAGGGGATTTGAATGGAGATGATTGCTTGAATGAGAAAGAATTTTGTGTGCTAATGGTAAGGTTGAGCCCTGATTTGATGGAAAAATCGAGAATGTGGTTCGCTCAGAGCATTGAAAATGATCTGATGTAGGCTCGTATTAGCATGTGCTTTATTGAGGGCATTCATTTTGAAGTAGGATTATTAAGCTATTCTAGCTAGGTCTATTAATTTCTATCTTGTTATTTTTTCCTCCTATGTATGTGTCGTCTAGTTTTATTATTAGTGAAGTTCATTGTTTTATTTGCCATTATT</gDNA_template>
            <first_frame> Q  N  I  D  N  I  H  F  R  K  F  I  V  Y  V  N  *  F  L  R  H  G  Y  I  G  T  *  R  C  V  *  G  F  F  S  I  N  D  G  E  T  R  V  R  R  V  L  E  G  A  K  E  R  V  P  G  I  D  G  *  G  E  G  S  D  H  V  *  E  L  E  E  E  F  G  V  V  R  V  R  R  N  E  *  *  *  T  N  V  Y  V  E  G  R  G  F  E  W  R  *  L  L  E  *  E  R  I  L  C  A  N  G  K  V  E  P  *  F  D  G  K  I  E  N  V  V  R  S  E  H  *  K  *  S  D  V  G  S  Y  *  H  V  L  Y  *  G  H  S  F  *  S  R  I  I  K  L  F  *  L  G  L  L  I  S  I  L  L  F  F  P  P  M  Y  V  S  S  S  F  I  I  S  E  V  H  C  F  I  C  H  Y  </first_frame>
            <second_frame>  K  T  S  I  I  S  I  F  E  N  S  S  C  T  L  I  N  F  *  G  M  A  T  L  G  R  D  V  V  F  E  D  F  F  P  S  M  M  E  K  L  G  S  E  G  F  L  K  E  L  K  N  G  F  R  A  L  M  D  K  E  R  E  V  I  T  F  E  S  L  K  R  N  S  A  L  L  G  L  E  G  M  S  D  D  E  L  M  C  M  L  R  E  G  D  L  N  G  D  D  C  L  N  E  K  E  F  C  V  L  M  V  R  L  S  P  D  L  M  E  K  S  R  M  W  F  A  Q  S  I  E  N  D  L  M  *  A  R  I  S  M  C  F  I  E  G  I  H  F  E  V  G  L  L  S  Y  S  S  *  V  Y  *  F  L  S  C  Y  F  F  L  L  C  M  C  R  L  V  L  L  L  V  K  F  I  V  L  F  A  I  I </second_frame>
            <third_frame>   K  H  R  *  Y  P  F  S  K  I  H  R  V  R  *  L  I  F  K  A  W  L  H  W  D  V  T  L  C  L  R  I  F  F  H  Q  *  W  R  N  *  G  Q  K  G  S  *  R  S  *  R  T  G  S  G  H  *  W  I  R  R  G  K  *  S  R  L  R  A  *  R  G  I  R  R  C  *  G  *  K  E  *  V  M  M  N  *  C  V  C  *  G  K  G  I  *  M  E  M  I  A  *  M  R  K  N  F  V  C  *  W  *  G  *  A  L  I  *  W  K  N  R  E  C  G  S  L  R  A  L  K  M  I  *  C  R  L  V  L  A  C  A  L  L  R  A  F  I  L  K  *  D  Y  *  A  I  L  A  R  S  I  N  F  Y  L  V  I  F  S  S  Y  V  C  V  V  *  F  Y  Y  *  *  S  S  L  F  Y  L  P  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0075O22.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75559" stop="75209"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>348</number_coding_nucleotides>
                  <number_encoded_amino_acids>116</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GMATLGRDVVFEDFFPSMMEKLGSEGFLKELKNGFRALMDKEREVITFESLKRNSALLGLEGMSDDELMCMLREGDLNGDDCLNEKEFCVLMVRLSPDLMEKSRMWFAQSIENDLM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="83590" PGL_stop="84262"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83590" e_stop="84262"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="83590" e_stop="84262" e_length="673"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83590" stop="84262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U602189" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAGATAACAGTCAAGCATACCGAAAAGAGAAAGAAGTGTGAGCAAATATCACGAAAATAGTATTGCAGGCTGCAGATATAGGTATTCTCCATTTTAGCTTATACAGAATTAATCCACACATGCAAAACAAACCTTAATAAGCAATGAAATTAAGCACAAGAGAGATACTTCTGTTTCCAGTTGTTCTTGTTCTGTTTCTTTCTATATCAACTGCTTCAGGTATCATTAGCACCAATAAATTCCTGCGAGATTCAGAAACTTTAGTCTCCAATGACAAAAGATTCATATTCGGGTTCTTTAGTCTTGAAAATTCGACGAATCGTTATGTTGGTGTTATGTTTAATGTCCAACCACCAACTGTAGTATGGGTTGCCAACAGAGAGAGACCTTTACAGGATTCTAGAGGAAGAGTGACAATATCTGATGATGGAAATCTTGTAATCTTGAATTCACAGAATAGGAGTATATGGTCATCAAATATTTCACCAGCTGTGAGAAATTCTACAGCGCAGCTCTTGGATACTGGAAACTTAATTTTGAACGACAGCTCCAATGGGAGGGTTCTCTGGGAAAGTTTTCGGGATCCTTCAGATTGCTTCTTGCAGACCATGAAAATTGGCGTTGATGTTAGTACTAACACGACAAATCTGCTGAAATCATGGATAAGTCCT</gDNA_template>
            <first_frame> K  R  *  Q  S  S  I  P  K  R  E  R  S  V  S  K  Y  H  E  N  S  I  A  G  C  R  Y  R  Y  S  P  F  *  L  I  Q  N  *  S  T  H  A  K  Q  T  L  I  S  N  E  I  K  H  K  R  D  T  S  V  S  S  C  S  C  S  V  S  F  Y  I  N  C  F  R  Y  H  *  H  Q  *  I  P  A  R  F  R  N  F  S  L  Q  *  Q  K  I  H  I  R  V  L  *  S  *  K  F  D  E  S  L  C  W  C  Y  V  *  C  P  T  T  N  C  S  M  G  C  Q  Q  R  E  T  F  T  G  F  *  R  K  S  D  N  I  *  *  W  K  S  C  N  L  E  F  T  E  *  E  Y  M  V  I  K  Y  F  T  S  C  E  K  F  Y  S  A  A  L  G  Y  W  K  L  N  F  E  R  Q  L  Q  W  E  G  S  L  G  K  F  S  G  S  F  R  L  L  L  A  D  H  E  N  W  R  *  C  *  Y  *  H  D  K  S  A  E  I  M  D  K  S  </first_frame>
            <second_frame>  K  D  N  S  Q  A  Y  R  K  E  K  E  V  *  A  N  I  T  K  I  V  L  Q  A  A  D  I  G  I  L  H  F  S  L  Y  R  I  N  P  H  M  Q  N  K  P  *  *  A  M  K  L  S  T  R  E  I  L  L  F  P  V  V  L  V  L  F  L  S  I  S  T  A  S  G  I  I  S  T  N  K  F  L  R  D  S  E  T  L  V  S  N  D  K  R  F  I  F  G  F  F  S  L  E  N  S  T  N  R  Y  V  G  V  M  F  N  V  Q  P  P  T  V  V  W  V  A  N  R  E  R  P  L  Q  D  S  R  G  R  V  T  I  S  D  D  G  N  L  V  I  L  N  S  Q  N  R  S  I  W  S  S  N  I  S  P  A  V  R  N  S  T  A  Q  L  L  D  T  G  N  L  I  L  N  D  S  S  N  G  R  V  L  W  E  S  F  R  D  P  S  D  C  F  L  Q  T  M  K  I  G  V  D  V  S  T  N  T  T  N  L  L  K  S  W  I  S  P </second_frame>
            <third_frame>   K  I  T  V  K  H  T  E  K  R  K  K  C  E  Q  I  S  R  K  *  Y  C  R  L  Q  I  *  V  F  S  I  L  A  Y  T  E  L  I  H  T  C  K  T  N  L  N  K  Q  *  N  *  A  Q  E  R  Y  F  C  F  Q  L  F  L  F  C  F  F  L  Y  Q  L  L  Q  V  S  L  A  P  I  N  S  C  E  I  Q  K  L  *  S  P  M  T  K  D  S  Y  S  G  S  L  V  L  K  I  R  R  I  V  M  L  V  L  C  L  M  S  N  H  Q  L  *  Y  G  L  P  T  E  R  D  L  Y  R  I  L  E  E  E  *  Q  Y  L  M  M  E  I  L  *  S  *  I  H  R  I  G  V  Y  G  H  Q  I  F  H  Q  L  *  E  I  L  Q  R  S  S  W  I  L  E  T  *  F  *  T  T  A  P  M  G  G  F  S  G  K  V  F  G  I  L  Q  I  A  S  C  R  P  *  K  L  A  L  M  L  V  L  T  R  Q  I  C  *  N  H  G  *  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0075O22.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83732" stop="84262"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>531</number_coding_nucleotides>
                  <number_encoded_amino_acids>177</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AMKLSTREILLFPVVLVLFLSISTASGIISTNKFLRDSETLVSNDKRFIFGFFSLENSTNRYVGVMFNVQPPTVVWVANRERPLQDSRGRVTISDDGNLVILNSQNRSIWSSNISPAVRNSTAQLLDTGNLILNDSSNGRVLWESFRDPSDCFLQTMKIGVDVSTNTTNLLKSWISP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="89194" PGL_stop="89782"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89194" e_stop="89782"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="89194" e_stop="89782" e_length="589"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89194" stop="89782"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U581765" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTTATTGGGAGAAGAAAACTTGATAAGAAATGAAGCTGAGCTTAAGCTGTAAGAATATACTTCTTTGTTGTGCTTTTCTTGTTCTGTTTTTTCTTATAACAAATGCTTCATCAGACTCCATTAGTATTAATGAGTTTCTGCAAGATTCAGAAACTTTAGTCTCTAATAACAAAACATTCAAATTGGTTTTTTTTTGTCCTGAGAATTCGGCGAATCGTTATGTTGGTATCATGTTTAATATGAAATCACAATCTGTTATATGGGTAGCCAACAGAGACCAGCCTTTACAAGATTCTAGTGGAAGAGTAACAATATCAGAAGATGGCAATCTTGTAATCTTGAATGGACAGGGAAAGAGTGTATGGTCATCAAATATTTCACCTGCTGTGAGGAATTCTACAGCCCAGCTCTTGGATACTGGAAACTTAGTTTTGAAGGACAACTCAAGTGAGAGAGTTCTATGGGAAAGTTTTAGTGATCTTTCAGATTCCTACTTGCAGAACATGAAACTTGGCACTGATAAGAGTACTAACACCACAAATCTGTTGAAATCATGGAGAAGTCCTGTAGATCCATCTGATGGGAGTT</gDNA_template>
            <first_frame> A  Y  W  E  K  K  T  *  *  E  M  K  L  S  L  S  C  K  N  I  L  L  C  C  A  F  L  V  L  F  F  L  I  T  N  A  S  S  D  S  I  S  I  N  E  F  L  Q  D  S  E  T  L  V  S  N  N  K  T  F  K  L  V  F  F  C  P  E  N  S  A  N  R  Y  V  G  I  M  F  N  M  K  S  Q  S  V  I  W  V  A  N  R  D  Q  P  L  Q  D  S  S  G  R  V  T  I  S  E  D  G  N  L  V  I  L  N  G  Q  G  K  S  V  W  S  S  N  I  S  P  A  V  R  N  S  T  A  Q  L  L  D  T  G  N  L  V  L  K  D  N  S  S  E  R  V  L  W  E  S  F  S  D  L  S  D  S  Y  L  Q  N  M  K  L  G  T  D  K  S  T  N  T  T  N  L  L  K  S  W  R  S  P  V  D  P  S  D  G  S  </first_frame>
            <second_frame>  L  I  G  R  R  K  L  D  K  K  *  S  *  A  *  A  V  R  I  Y  F  F  V  V  L  F  L  F  C  F  F  L  *  Q  M  L  H  Q  T  P  L  V  L  M  S  F  C  K  I  Q  K  L  *  S  L  I  T  K  H  S  N  W  F  F  F  V  L  R  I  R  R  I  V  M  L  V  S  C  L  I  *  N  H  N  L  L  Y  G  *  P  T  E  T  S  L  Y  K  I  L  V  E  E  *  Q  Y  Q  K  M  A  I  L  *  S  *  M  D  R  E  R  V  Y  G  H  Q  I  F  H  L  L  *  G  I  L  Q  P  S  S  W  I  L  E  T  *  F  *  R  T  T  Q  V  R  E  F  Y  G  K  V  L  V  I  F  Q  I  P  T  C  R  T  *  N  L  A  L  I  R  V  L  T  P  Q  I  C  *  N  H  G  E  V  L  *  I  H  L  M  G  V </second_frame>
            <third_frame>   L  L  G  E  E  N  L  I  R  N  E  A  E  L  K  L  *  E  Y  T  S  L  L  C  F  S  C  S  V  F  S  Y  N  K  C  F  I  R  L  H  *  Y  *  *  V  S  A  R  F  R  N  F  S  L  *  *  Q  N  I  Q  I  G  F  F  L  S  *  E  F  G  E  S  L  C  W  Y  H  V  *  Y  E  I  T  I  C  Y  M  G  S  Q  Q  R  P  A  F  T  R  F  *  W  K  S  N  N  I  R  R  W  Q  S  C  N  L  E  W  T  G  K  E  C  M  V  I  K  Y  F  T  C  C  E  E  F  Y  S  P  A  L  G  Y  W  K  L  S  F  E  G  Q  L  K  *  E  S  S  M  G  K  F  *  *  S  F  R  F  L  L  A  E  H  E  T  W  H  *  *  E  Y  *  H  H  K  S  V  E  I  M  E  K  S  C  R  S  I  *  W  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0075O22.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89221" stop="89781"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>561</number_coding_nucleotides>
                  <number_encoded_amino_acids>187</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMKLSLSCKNILLCCAFLVLFFLITNASSDSISINEFLQDSETLVSNNKTFKLVFFCPENSANRYVGIMFNMKSQSVIWVANRDQPLQDSSGRVTISEDGNLVILNGQGKSVWSSNISPAVRNSTAQLLDTGNLVLKDNSSERVLWESFSDLSDSYLQNMKLGTDKSTNTTNLLKSWRSPVDPSDGS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="91253" PGL_stop="92408"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91253" e_stop="91302"/>
            <exon e_start="91408" e_stop="91651"/>
            <exon e_start="91737" e_stop="91887"/>
            <exon e_start="91963" e_stop="92408"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.937" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.883" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.786" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="91253" e_stop="91302" e_length="50"/>
          </exon>
          <intron i_serial="1" don_prob="0.937" acc_prob="0.987">
            <gDNA_intron_boundary i_start="91303" i_stop="91407" i_length="105"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="91408" e_stop="91651" e_length="244"/>
          </exon>
          <intron i_serial="2" don_prob="0.883" acc_prob="0.984">
            <gDNA_intron_boundary i_start="91652" i_stop="91736" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="91737" e_stop="91887" e_length="151"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.786">
            <gDNA_intron_boundary i_start="91888" i_stop="91962" i_length="75"/>
          </intron>
          <exon e_serial="4" e_score="0.996">
            <gDNA_exon_boundary e_start="91963" e_stop="92408" e_length="446"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91253" stop="91302"/>
              <exon start="91408" stop="91651"/>
              <exon start="91737" stop="91887"/>
              <exon start="91963" stop="92408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U567053" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTGGTTTATGAATACATGCCAAAAAGAAGCTTGGATGCCTATCTCTTTG : GTGTACACATTGAAGAGGAATACTTCCTTGATTGGAGCAAACGTGTGATCATCATTGAGGGAATCGGCCGAGGCCTCCTATACCTTCACAGGGATTCAAGACTAAGGATTATCCACAGGGATTTAAAGGCAAGCAACATTTTGTTGGATGAATATCTGAACCCTAAAATTTCAGATTTTGGTATGGCAAGAATTATTGCAGGCAACCAAGATCAAGCCAATACAATTAGGGTTGTTGGAACCTA : TGGTTATATGGCACCTGAATATGCAATGACAGGAAGATTCTCAGAAAAATCAGATGTCTACAGCTTTGGCGTATTGTTACTGGAAATTATTAGCGGAAGGAGGAACACTAGCTTTTACCAAGAGGATGGTGCATTAAGCCTTCTAGCATGG : GCATGGAAGTTGTGGAATGAAAATAAGATTGTCGAATTGGTTGACTCCAAGATAATTGAACTACAGCTCAAAAAGGAGATTCATAGATGTGTACATGTTGGACTATTATGTGTACAAGAATATGCAGAAGACAGGCCAAATGTCTCCACAGTTTTGTCTATGCTCACCCGGGAAATTGATGATTTACCAAGTCCTAAACAACCTGCATTTACAACAAGACCGACCCCTTCCAAGAAAGGCTCCTCTAGAATTCAAGTCTCCGTGAACGATGTTAGCATTACTATTATGGAAGCACGATAGAGATCATATAATTTTAGTGTAGGCATATATCTTATTCATTTCCTGTAATTATTCTTGTATGTGATTCTACATTTAGAATCCAAGAGAAGTTTAAACCGAGCTGAGTCCTTTAGCAGCGAGAATTTCAGTCAAGAGATTAACAAGTT</gDNA_template>
            <first_frame> V  G  L  *  I  H  A  K  K  K  L  G  C  L  S  L  W :   C  T  H  *  R  G  I  L  P  *  L  E  Q  T  C  D  H  H  *  G  N  R  P  R  P  P  I  P  S  Q  G  F  K  T  K  D  Y  P  Q  G  F  K  G  K  Q  H  F  V  G  *  I  S  E  P  *  N  F  R  F  W  Y  G  K  N  Y  C  R  Q  P  R  S  S  Q  Y  N  *  G  C  W  N  L  :  W  L  Y  G  T  *  I  C  N  D  R  K  I  L  R  K  I  R  C  L  Q  L  W  R  I  V  T  G  N  Y  *  R  K  E  E  H  *  L  L  P  R  G  W  C  I  K  P  S  S  M   : G  M  E  V  V  E  *  K  *  D  C  R  I  G  *  L  Q  D  N  *  T  T  A  Q  K  G  D  S  *  M  C  T  C  W  T  I  M  C  T  R  I  C  R  R  Q  A  K  C  L  H  S  F  V  Y  A  H  P  G  N  *  *  F  T  K  S  *  T  T  C  I  Y  N  K  T  D  P  F  Q  E  R  L  L  *  N  S  S  L  R  E  R  C  *  H  Y  Y  Y  G  S  T  I  E  I  I  *  F  *  C  R  H  I  S  Y  S  F  P  V  I  I  L  V  C  D  S  T  F  R  I  Q  E  K  F  K  P  S  *  V  L  *  Q  R  E  F  Q  S  R  D  *  Q  V </first_frame>
            <second_frame>  L  V  Y  E  Y  M  P  K  R  S  L  D  A  Y  L  F   : G  V  H  I  E  E  E  Y  F  L  D  W  S  K  R  V  I  I  I  E  G  I  G  R  G  L  L  Y  L  H  R  D  S  R  L  R  I  I  H  R  D  L  K  A  S  N  I  L  L  D  E  Y  L  N  P  K  I  S  D  F  G  M  A  R  I  I  A  G  N  Q  D  Q  A  N  T  I  R  V  V  G  T  Y :   G  Y  M  A  P  E  Y  A  M  T  G  R  F  S  E  K  S  D  V  Y  S  F  G  V  L  L  L  E  I  I  S  G  R  R  N  T  S  F  Y  Q  E  D  G  A  L  S  L  L  A  W  :  A  W  K  L  W  N  E  N  K  I  V  E  L  V  D  S  K  I  I  E  L  Q  L  K  K  E  I  H  R  C  V  H  V  G  L  L  C  V  Q  E  Y  A  E  D  R  P  N  V  S  T  V  L  S  M  L  T  R  E  I  D  D  L  P  S  P  K  Q  P  A  F  T  T  R  P  T  P  S  K  K  G  S  S  R  I  Q  V  S  V  N  D  V  S  I  T  I  M  E  A  R  *  R  S  Y  N  F  S  V  G  I  Y  L  I  H  F  L  *  L  F  L  Y  V  I  L  H  L  E  S  K  R  S  L  N  R  A  E  S  F  S  S  E  N  F  S  Q  E  I  N  K   </second_frame>
            <third_frame>   W  F  M  N  T  C  Q  K  E  A  W  M  P  I  S  L  :  V  Y  T  L  K  R  N  T  S  L  I  G  A  N  V  *  S  S  L  R  E  S  A  E  A  S  Y  T  F  T  G  I  Q  D  *  G  L  S  T  G  I  *  R  Q  A  T  F  C  W  M  N  I  *  T  L  K  F  Q  I  L  V  W  Q  E  L  L  Q  A  T  K  I  K  P  I  Q  L  G  L  L  E  P   : M  V  I  W  H  L  N  M  Q  *  Q  E  D  S  Q  K  N  Q  M  S  T  A  L  A  Y  C  Y  W  K  L  L  A  E  G  G  T  L  A  F  T  K  R  M  V  H  *  A  F  *  H  G :   H  G  S  C  G  M  K  I  R  L  S  N  W  L  T  P  R  *  L  N  Y  S  S  K  R  R  F  I  D  V  Y  M  L  D  Y  Y  V  Y  K  N  M  Q  K  T  G  Q  M  S  P  Q  F  C  L  C  S  P  G  K  L  M  I  Y  Q  V  L  N  N  L  H  L  Q  Q  D  R  P  L  P  R  K  A  P  L  E  F  K  S  P  *  T  M  L  A  L  L  L  W  K  H  D  R  D  H  I  I  L  V  *  A  Y  I  L  F  I  S  C  N  Y  S  C  M  *  F  Y  I  *  N  P  R  E  V  *  T  E  L  S  P  L  A  A  R  I  S  V  K  R  L  T  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0075O22.2" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91254" stop="91302"/>
                    <exon start="91408" stop="91651"/>
                    <exon start="91737" stop="91887"/>
                    <exon start="91963" stop="92262"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>741</number_coding_nucleotides>
                  <number_encoded_amino_acids>247</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVYEYMPKRSLDAYLFGVHIEEEYFLDWSKRVIIIEGIGRGLLYLHRDSRLRIIHRDLKASNILLDEYLNPKISDFGMARIIAGNQDQANTIRVVGTYGYMAPEYAMTGRFSEKSDVYSFGVLLLEIISGRRNTSFYQEDGALSLLAWAWKLWNENKIVELVDSKIIELQLKKEIHRCVHVGLLCVQEYAEDRPNVSTVLSMLTREIDDLPSPKQPAFTTRPTPSKKGSSRIQVSVNDVSITIMEAR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 31 chains have been computed
$ 
$ memory statistics:
$ 31016 bytes spliced alignments in total
$ 15 spliced alignments have been stored
$ 2067 bytes was the average size of a spliced alignment
$ 21224 bytes predicted gene locations in total
$ 14 predicted gene locations have been stored
$ 1516 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 38 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 11:02:00
-->
