<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 11:04:55"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E356693" ref_strand="+" ref_description="SGN-E356693 [cTOS-21-I23]">
      <seq>gcgaacccaagggacttccaagaatgtggaagatgatgacgagggcagaaagctagaaggctgggagttagtcatgaaagagagactattaaatgttaaggaaatggcagatttctcgtctgaactgttatcgtggcttgatgacatgacttcagcaacggatttccaggaggcatttgatgttcttggtgttttgagtgatgtgctttctgggttcagtcgatgtgaagattatgtacatgctgcaatcagtggtgggaaaaactgatccatcaaaggtgtttctgtgacatgctttctgggttcagtcaatgtgaggattatgtacatggtggcgggccaaacagagaatttgtcgaaggctcacttcggttaagtattgtattccctagtcttcttacttcgatatatgtggaatattcttttgtaggtgcgtcttttattcccttgttacacgaattgcgagtgagccttctgagttttgtttctcaatgtagtcgaagtttacatctttctgtatcgaccataacttataaccagtaaaatagcccccactttgggcagcaaaaaatttaaatagttttgtctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="1454" stop="266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1154" g_stop="557" g_length="598"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="598" r_length="598" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E356693" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356693" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1154" e_stop="557"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAACCCAAGGGACTTCCAAGAATGTGGAAGATGATGACGAGGGCAGAAAGCTAGAAGGCTGGGAGTTAGTCATGAAAGAGAGACTATTAAATGTTAAGGAAATGGCAGATTTCTCGTCTGAACTGTTATCGTGGCTTGATGACATGACTTCAGCAACGGATTTCCAGGAGGCATTTGATGTTCTTGGTGTTTTGAGTGATGTGCTTTCTGGGTTCAGTCGATGTGAAGATTATGTACATGCTGCAATCAGTGGTGGGAAAAACTGATCCATCAAAGGTGTTTCTGTGACATGCTTTCTGGGTTCAGTCAATGTGAGGATTATGTACATGGTGGCGGGCCAAACAGAGAATTTGTCGAAGGCTCACTTCGGTTAAGTATTGTATTCCCTAGTCTTCTTACTTCGATATATGTGGAATATTCTTTTGTAGGTGCGTCTTTTATTCCCTTGTTACACGAATTGCGAGTGAGCCTTCTGAGTTTTGTTTCTCAATGTAGTCGAAGTGTACATCTTTCTGTATCGACCATAACTTAAAACCAGTAAAATAGCCCCCACTTTGGGCAGCAAAAAATTTAAATAGTTTTGTCTACTTGAGTAG</genome_strand>
        <mrna_strand>GCGAACCCAAGGGACTTCCAAGAATGTGGAAGATGATGACGAGGGCAGAAAGCTAGAAGGCTGGGAGTTAGTCATGAAAGAGAGACTATTAAATGTTAAGGAAATGGCAGATTTCTCGTCTGAACTGTTATCGTGGCTTGATGACATGACTTCAGCAACGGATTTCCAGGAGGCATTTGATGTTCTTGGTGTTTTGAGTGATGTGCTTTCTGGGTTCAGTCGATGTGAAGATTATGTACATGCTGCAATCAGTGGTGGGAAAAACTGATCCATCAAAGGTGTTTCTGTGACATGCTTTCTGGGTTCAGTCAATGTGAGGATTATGTACATGGTGGCGGGCCAAACAGAGAATTTGTCGAAGGCTCACTTCGGTTAAGTATTGTATTCCCTAGTCTTCTTACTTCGATATATGTGGAATATTCTTTTGTAGGTGCGTCTTTTATTCCCTTGTTACACGAATTGCGAGTGAGCCTTCTGAGTTTTGTTTCTCAATGTAGTCGAAGTTTACATCTTTCTGTATCGACCATAACTTATAACCAGTAAAATAGCCCCCACTTTGGGCAGCAAAAAATTTAAATAGTTTTGTCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E711493" ref_strand="+" ref_description="SGN-E711493 [FB02AF06]">
      <seq>cctataagaacatctgcttctgaggctgggggatcaattgagcctttctcaactattcaaccaatgcttgtctacactggtttgatagaacaactgcagcgcttctttaaggtaaaaaaatcatctaatgcgaccaccttgcgaacccaagggacttccaagaatgtggaatatgatgacgagggcacaaagctagaaggctgggagttagtcatgaaagagagactattaaatgttaaggaaatggcagatttctcgtctgaactgttatcgtggcttgatgacatgacttcagcaacggatttccaggaggcatttgatgttcttggtgttttgagtgatgtgctttctgggttcagtcgatgtgaagattatgtacatgctgcaatcagtggtgggaaaaactgatccatcaaaggtgtttctgtgacatgctttctgggttcagtcaatgtgatgattatgtacatggtgacgggccaaacagagaatttgtcgaaggctcacttcggttaagtattgtattccctagtcttcttacttcgatatatgtggaatattcttttgtaggtgcgatcttttattcccttgatacacgaattgcgagtgagccttctgagttttgtttctcaatgtagtcgaagtgtacatctttctgtatcgaccataacttaaaaccagtaaaatagcccccactttgggcagcaaaaaatttaaatagtttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="1592" stop="272"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1294" g_stop="571" g_length="724"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="725" r_length="725" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="726" polyA_stop="737"/>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E711493" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711493" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1294" e_stop="571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTACAAGTACATCTGCTTCTGAGGCTGGGGGATCAATTGAGTTATTCTCAACTATTCAACCAATGCTTGTCTACACTGGTTTGATAGAACAACTGCAGCGCTTCTTTAAGGTAAAAAAATCATCTAGTGCGACCACCTTGCGAACCCAAGGGACTTCCAAGAATGTGGAAGATGATGACGAGGGCAGAAAGCTAGAAGGCTGGGAGTTAGTCATGAAAGAGAGACTATTAAATGTTAAGGAAATGGCAGATTTCTCGTCTGAACTGTTATCGTGGCTTGATGACATGACTTCAGCAACGGATTTCCAGGAGGCATTTGATGTTCTTGGTGTTTTGAGTGATGTGCTTTCTGGGTTCAGTCGATGTGAAGATTATGTACATGCTGCAATCAGTGGTGGGAAAAACTGATCCATCAAAGGTGTTTCTGTGACATGCTTTCTGGGTTCAGTCAATGTGAGGATTATGTACATGGTGGCGGGCCAAACAGAGAATTTGTCGAAGGCTCACTTCGGTTAAGTATTGTATTCCCTAGTCTTCTTACTTCGATATATGTGGAATATTCTTTTGTAGGTGCG-TCTTTTATTCCCTTGTTACACGAATTGCGAGTGAGCCTTCTGAGTTTTGTTTCTCAATGTAGTCGAAGTGTACATCTTTCTGTATCGACCATAACTTAAAACCAGTAAAATAGCCCCCACTTTGGGCAGCAAAAAATTTAAATAGTTTT</genome_strand>
        <mrna_strand>CCTATAAGAACATCTGCTTCTGAGGCTGGGGGATCAATTGAGCCTTTCTCAACTATTCAACCAATGCTTGTCTACACTGGTTTGATAGAACAACTGCAGCGCTTCTTTAAGGTAAAAAAATCATCTAATGCGACCACCTTGCGAACCCAAGGGACTTCCAAGAATGTGGAATATGATGACGAGGGCACAAAGCTAGAAGGCTGGGAGTTAGTCATGAAAGAGAGACTATTAAATGTTAAGGAAATGGCAGATTTCTCGTCTGAACTGTTATCGTGGCTTGATGACATGACTTCAGCAACGGATTTCCAGGAGGCATTTGATGTTCTTGGTGTTTTGAGTGATGTGCTTTCTGGGTTCAGTCGATGTGAAGATTATGTACATGCTGCAATCAGTGGTGGGAAAAACTGATCCATCAAAGGTGTTTCTGTGACATGCTTTCTGGGTTCAGTCAATGTGATGATTATGTACATGGTGACGGGCCAAACAGAGAATTTGTCGAAGGCTCACTTCGGTTAAGTATTGTATTCCCTAGTCTTCTTACTTCGATATATGTGGAATATTCTTTTGTAGGTGCGATCTTTTATTCCCTTGATACACGAATTGCGAGTGAGCCTTCTGAGTTTTGTTTCTCAATGTAGTCGAAGTGTACATCTTTCTGTATCGACCATAACTTAAAACCAGTAAAATAGCCCCCACTTTGGGCAGCAAAAAATTTAAATAGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E735759" ref_strand="+" ref_description="SGN-E735759 [LC02DF04]">
      <seq>gagggcagcaatctagaaggctgggagttagtcatgaaagagagactattaaatgttaaggaaatggcagatttctcgtctgaactgttatcgtggcttgatgacatgacttcagcaacggatttccaggaggcatttgatgttcttggtgttttgagtgatgtgctttctgggttcagtcgatgtgaagattatgtacatgctgcaatcagtggtgggaaaaactgatccatcaaaggtgtttctgtgacatgctttctgggttcagtcaatgtgaggattatgtacatggtggcgggccaaacagagaatttgtcgaaggctcacttcggttaagtattgtattccctagtcttcttacttcgatatatgtggaatattcttttgtaggtgcgtcttttattcccttgttacacgaattgcgagtgagccttctgagttttgtttctcaatgtagtcgaagtgtacatctttctgtatcgaccataacttaaaaccagtaaaatagcccccactttgggcagcaaaaaatttaaataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="1414" stop="276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1114" g_stop="576" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="539" r_length="539" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="540" polyA_stop="552"/>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E735759" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1114" e_stop="576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGGCAGAAAGCTAGAAGGCTGGGAGTTAGTCATGAAAGAGAGACTATTAAATGTTAAGGAAATGGCAGATTTCTCGTCTGAACTGTTATCGTGGCTTGATGACATGACTTCAGCAACGGATTTCCAGGAGGCATTTGATGTTCTTGGTGTTTTGAGTGATGTGCTTTCTGGGTTCAGTCGATGTGAAGATTATGTACATGCTGCAATCAGTGGTGGGAAAAACTGATCCATCAAAGGTGTTTCTGTGACATGCTTTCTGGGTTCAGTCAATGTGAGGATTATGTACATGGTGGCGGGCCAAACAGAGAATTTGTCGAAGGCTCACTTCGGTTAAGTATTGTATTCCCTAGTCTTCTTACTTCGATATATGTGGAATATTCTTTTGTAGGTGCGTCTTTTATTCCCTTGTTACACGAATTGCGAGTGAGCCTTCTGAGTTTTGTTTCTCAATGTAGTCGAAGTGTACATCTTTCTGTATCGACCATAACTTAAAACCAGTAAAATAGCCCCCACTTTGGGCAGCAAAAAATTTAAATA</genome_strand>
        <mrna_strand>GAGGGCAGCAATCTAGAAGGCTGGGAGTTAGTCATGAAAGAGAGACTATTAAATGTTAAGGAAATGGCAGATTTCTCGTCTGAACTGTTATCGTGGCTTGATGACATGACTTCAGCAACGGATTTCCAGGAGGCATTTGATGTTCTTGGTGTTTTGAGTGATGTGCTTTCTGGGTTCAGTCGATGTGAAGATTATGTACATGCTGCAATCAGTGGTGGGAAAAACTGATCCATCAAAGGTGTTTCTGTGACATGCTTTCTGGGTTCAGTCAATGTGAGGATTATGTACATGGTGGCGGGCCAAACAGAGAATTTGTCGAAGGCTCACTTCGGTTAAGTATTGTATTCCCTAGTCTTCTTACTTCGATATATGTGGAATATTCTTTTGTAGGTGCGTCTTTTATTCCCTTGTTACACGAATTGCGAGTGAGCCTTCTGAGTTTTGTTTCTCAATGTAGTCGAAGTGTACATCTTTCTGTATCGACCATAACTTAAAACCAGTAAAATAGCCCCCACTTTGGGCAGCAAAAAATTTAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E735334" ref_strand="+" ref_description="SGN-E735334 [LC01AD09]">
      <seq>gagggcagaacgctagaaggctgggagttagtcatgaaagagagactattaaatgttaaggaaatggcagatttctcgtctgaactgttatcgtggcttgatgacatgacttcagcaacggatttccaggaggcatttgatgttcttggtgttttgagtgatgtgctttctgggttcagtcgatgtgaagattatgtacatgctgcaatcagtggtgggaaaaactgatccatcaaaggtgtttctgtgacatgctttctgggttcagtcaatgtgaggattatgtacatggtggcgggccaaacagagaatttgtcgaaggctcacttcggttaagtattgtattccctagtcttcttacttcgatatatgtggaatattcttttgtaggtgcgtcttttattcccttgttacacgaattgcgagtgagccttctgagttttgtttctcaatgtagtcgaagtgtacatctttctgtatcgaccataacttaaaaccagtaaaatagcccccactttgggcagcaaaaaatttaaataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="1414" stop="276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1114" g_stop="576" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="539" r_length="539" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="540" polyA_stop="552"/>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E735334" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735334" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1114" e_stop="576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGGCAGAAAGCTAGAAGGCTGGGAGTTAGTCATGAAAGAGAGACTATTAAATGTTAAGGAAATGGCAGATTTCTCGTCTGAACTGTTATCGTGGCTTGATGACATGACTTCAGCAACGGATTTCCAGGAGGCATTTGATGTTCTTGGTGTTTTGAGTGATGTGCTTTCTGGGTTCAGTCGATGTGAAGATTATGTACATGCTGCAATCAGTGGTGGGAAAAACTGATCCATCAAAGGTGTTTCTGTGACATGCTTTCTGGGTTCAGTCAATGTGAGGATTATGTACATGGTGGCGGGCCAAACAGAGAATTTGTCGAAGGCTCACTTCGGTTAAGTATTGTATTCCCTAGTCTTCTTACTTCGATATATGTGGAATATTCTTTTGTAGGTGCGTCTTTTATTCCCTTGTTACACGAATTGCGAGTGAGCCTTCTGAGTTTTGTTTCTCAATGTAGTCGAAGTGTACATCTTTCTGTATCGACCATAACTTAAAACCAGTAAAATAGCCCCCACTTTGGGCAGCAAAAAATTTAAATA</genome_strand>
        <mrna_strand>GAGGGCAGAACGCTAGAAGGCTGGGAGTTAGTCATGAAAGAGAGACTATTAAATGTTAAGGAAATGGCAGATTTCTCGTCTGAACTGTTATCGTGGCTTGATGACATGACTTCAGCAACGGATTTCCAGGAGGCATTTGATGTTCTTGGTGTTTTGAGTGATGTGCTTTCTGGGTTCAGTCGATGTGAAGATTATGTACATGCTGCAATCAGTGGTGGGAAAAACTGATCCATCAAAGGTGTTTCTGTGACATGCTTTCTGGGTTCAGTCAATGTGAGGATTATGTACATGGTGGCGGGCCAAACAGAGAATTTGTCGAAGGCTCACTTCGGTTAAGTATTGTATTCCCTAGTCTTCTTACTTCGATATATGTGGAATATTCTTTTGTAGGTGCGTCTTTTATTCCCTTGTTACACGAATTGCGAGTGAGCCTTCTGAGTTTTGTTTCTCAATGTAGTCGAAGTGTACATCTTTCTGTATCGACCATAACTTAAAACCAGTAAAATAGCCCCCACTTTGGGCAGCAAAAAATTTAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E735454" ref_strand="+" ref_description="SGN-E735454 [LC01CF04]">
      <seq>gagggcagacagctagaaggctgggagttagtcatgaaagagagactattaaatgttaaggaaatggcagatttctcgtctgaactgttatcgtggcttgatgacatgacttcagcaacggatttccaggaggcatttgatgttcttggtgttttgagtgatgtgctttctgggttcagtcgatgtgaagattatgtacatgctgcaatcagtggtgggaaaaactgatccatcaaaggtgtttctgtgacatgctttctgggttcagtcaatgtgaggattatgtacatggtggcgggccaaacagagaatttgtcgaaggctcacttcggttaagtattgtattccctagtcttcttacttcgatatatgtggaatattcttttgtaggtgcgtcttttattcccttgttacacgaattgcgagtgagccttctgagttttgtttctcaatgtagtcgaagtgtacatctttctgtatcgaccataacttaaaaccagtaaaatagcccccactttgggcagcaaaaaatttaaataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="1414" stop="276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1114" g_stop="576" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="539" r_length="539" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="540" polyA_stop="552"/>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E735454" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735454" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1114" e_stop="576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGGCAGAAAGCTAGAAGGCTGGGAGTTAGTCATGAAAGAGAGACTATTAAATGTTAAGGAAATGGCAGATTTCTCGTCTGAACTGTTATCGTGGCTTGATGACATGACTTCAGCAACGGATTTCCAGGAGGCATTTGATGTTCTTGGTGTTTTGAGTGATGTGCTTTCTGGGTTCAGTCGATGTGAAGATTATGTACATGCTGCAATCAGTGGTGGGAAAAACTGATCCATCAAAGGTGTTTCTGTGACATGCTTTCTGGGTTCAGTCAATGTGAGGATTATGTACATGGTGGCGGGCCAAACAGAGAATTTGTCGAAGGCTCACTTCGGTTAAGTATTGTATTCCCTAGTCTTCTTACTTCGATATATGTGGAATATTCTTTTGTAGGTGCGTCTTTTATTCCCTTGTTACACGAATTGCGAGTGAGCCTTCTGAGTTTTGTTTCTCAATGTAGTCGAAGTGTACATCTTTCTGTATCGACCATAACTTAAAACCAGTAAAATAGCCCCCACTTTGGGCAGCAAAAAATTTAAATA</genome_strand>
        <mrna_strand>GAGGGCAGACAGCTAGAAGGCTGGGAGTTAGTCATGAAAGAGAGACTATTAAATGTTAAGGAAATGGCAGATTTCTCGTCTGAACTGTTATCGTGGCTTGATGACATGACTTCAGCAACGGATTTCCAGGAGGCATTTGATGTTCTTGGTGTTTTGAGTGATGTGCTTTCTGGGTTCAGTCGATGTGAAGATTATGTACATGCTGCAATCAGTGGTGGGAAAAACTGATCCATCAAAGGTGTTTCTGTGACATGCTTTCTGGGTTCAGTCAATGTGAGGATTATGTACATGGTGGCGGGCCAAACAGAGAATTTGTCGAAGGCTCACTTCGGTTAAGTATTGTATTCCCTAGTCTTCTTACTTCGATATATGTGGAATATTCTTTTGTAGGTGCGTCTTTTATTCCCTTGTTACACGAATTGCGAGTGAGCCTTCTGAGTTTTGTTTCTCAATGTAGTCGAAGTGTACATCTTTCTGTATCGACCATAACTTAAAACCAGTAAAATAGCCCCCACTTTGGGCAGCAAAAAATTTAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E735550" ref_strand="+" ref_description="SGN-E735550 [LC02AD09]">
      <seq>gagggcagacagctagaaggctgggagttagtcatgaaagagagactattaaatgttaaggaaatggcagatttctcgtctgaactgttatcgtggcttgatgacatgacttcagcaacggatttccaggaggcatttgatgttcttggtgttttgagtgatgtgctttctgggttcagtcgatgtgaagattatgtacatgctgcaatcagtggtgggaaaaactgatccatcaaaggtgtttctgtgacatgctttctgggttcagtcaatgtgaggattatgtacatggtggcgggccaaacagagaatttgtcgaaggctcacttcggttaagtattgtattccctagtcttcttacttcgatatatgtggaatattcttttgtaggtgcgtcttttattcccttgttacacgaattgcgagtgagccttctgagttttgtttctcaatgtagtcgaagtgtacatctttctgtatcgaccataacttaaaaccagtaaaatagcccccactttgggcagcaaaaaatttaaataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="1414" stop="276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1114" g_stop="576" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="539" r_length="539" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="540" polyA_stop="552"/>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E735550" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1114" e_stop="576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGGCAGAAAGCTAGAAGGCTGGGAGTTAGTCATGAAAGAGAGACTATTAAATGTTAAGGAAATGGCAGATTTCTCGTCTGAACTGTTATCGTGGCTTGATGACATGACTTCAGCAACGGATTTCCAGGAGGCATTTGATGTTCTTGGTGTTTTGAGTGATGTGCTTTCTGGGTTCAGTCGATGTGAAGATTATGTACATGCTGCAATCAGTGGTGGGAAAAACTGATCCATCAAAGGTGTTTCTGTGACATGCTTTCTGGGTTCAGTCAATGTGAGGATTATGTACATGGTGGCGGGCCAAACAGAGAATTTGTCGAAGGCTCACTTCGGTTAAGTATTGTATTCCCTAGTCTTCTTACTTCGATATATGTGGAATATTCTTTTGTAGGTGCGTCTTTTATTCCCTTGTTACACGAATTGCGAGTGAGCCTTCTGAGTTTTGTTTCTCAATGTAGTCGAAGTGTACATCTTTCTGTATCGACCATAACTTAAAACCAGTAAAATAGCCCCCACTTTGGGCAGCAAAAAATTTAAATA</genome_strand>
        <mrna_strand>GAGGGCAGACAGCTAGAAGGCTGGGAGTTAGTCATGAAAGAGAGACTATTAAATGTTAAGGAAATGGCAGATTTCTCGTCTGAACTGTTATCGTGGCTTGATGACATGACTTCAGCAACGGATTTCCAGGAGGCATTTGATGTTCTTGGTGTTTTGAGTGATGTGCTTTCTGGGTTCAGTCGATGTGAAGATTATGTACATGCTGCAATCAGTGGTGGGAAAAACTGATCCATCAAAGGTGTTTCTGTGACATGCTTTCTGGGTTCAGTCAATGTGAGGATTATGTACATGGTGGCGGGCCAAACAGAGAATTTGTCGAAGGCTCACTTCGGTTAAGTATTGTATTCCCTAGTCTTCTTACTTCGATATATGTGGAATATTCTTTTGTAGGTGCGTCTTTTATTCCCTTGTTACACGAATTGCGAGTGAGCCTTCTGAGTTTTGTTTCTCAATGTAGTCGAAGTGTACATCTTTCTGTATCGACCATAACTTAAAACCAGTAAAATAGCCCCCACTTTGGGCAGCAAAAAATTTAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E739563" ref_strand="+" ref_description="SGN-E739563 [LC17DG08]">
      <seq>gagggcagaacgctagaaggctgggagttagtcatgaaagagagactattaaatgttaaggaaatggcagatttctcgtctgaactgttatcgtggcttgatgacatgacttcagcaacggatttccaggaggcatttgatgttcttggtgttttgagtgatgtgctttctgggttcagtcgatgtgaagattatgtacatgctgcaatcagtggtgggaaaaactgatccatcaaaggtgtttctgtgacatgctttctgggttcagtcaatgtgaggattatgtacatggtggcgggccaaacagagaatttgtcgaaggctcacttcggttaagtattgtattccctagtcttcttacttcgatatatgtggaatattcttttgtaggtgcgtcttttattcccttgttacacgaattgcgagtgagccttctgagttttgtttctcaatgtagtcgaagtgtacatctttctgtatcgaccataacttaaaaccagtaaaatagcccccactttgggcagcaaaaaatttaaataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="1414" stop="276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1114" g_stop="576" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="539" r_length="539" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="540" polyA_stop="552"/>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E739563" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739563" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1114" e_stop="576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGGCAGAAAGCTAGAAGGCTGGGAGTTAGTCATGAAAGAGAGACTATTAAATGTTAAGGAAATGGCAGATTTCTCGTCTGAACTGTTATCGTGGCTTGATGACATGACTTCAGCAACGGATTTCCAGGAGGCATTTGATGTTCTTGGTGTTTTGAGTGATGTGCTTTCTGGGTTCAGTCGATGTGAAGATTATGTACATGCTGCAATCAGTGGTGGGAAAAACTGATCCATCAAAGGTGTTTCTGTGACATGCTTTCTGGGTTCAGTCAATGTGAGGATTATGTACATGGTGGCGGGCCAAACAGAGAATTTGTCGAAGGCTCACTTCGGTTAAGTATTGTATTCCCTAGTCTTCTTACTTCGATATATGTGGAATATTCTTTTGTAGGTGCGTCTTTTATTCCCTTGTTACACGAATTGCGAGTGAGCCTTCTGAGTTTTGTTTCTCAATGTAGTCGAAGTGTACATCTTTCTGTATCGACCATAACTTAAAACCAGTAAAATAGCCCCCACTTTGGGCAGCAAAAAATTTAAATA</genome_strand>
        <mrna_strand>GAGGGCAGAACGCTAGAAGGCTGGGAGTTAGTCATGAAAGAGAGACTATTAAATGTTAAGGAAATGGCAGATTTCTCGTCTGAACTGTTATCGTGGCTTGATGACATGACTTCAGCAACGGATTTCCAGGAGGCATTTGATGTTCTTGGTGTTTTGAGTGATGTGCTTTCTGGGTTCAGTCGATGTGAAGATTATGTACATGCTGCAATCAGTGGTGGGAAAAACTGATCCATCAAAGGTGTTTCTGTGACATGCTTTCTGGGTTCAGTCAATGTGAGGATTATGTACATGGTGGCGGGCCAAACAGAGAATTTGTCGAAGGCTCACTTCGGTTAAGTATTGTATTCCCTAGTCTTCTTACTTCGATATATGTGGAATATTCTTTTGTAGGTGCGTCTTTTATTCCCTTGTTACACGAATTGCGAGTGAGCCTTCTGAGTTTTGTTTCTCAATGTAGTCGAAGTGTACATCTTTCTGTATCGACCATAACTTAAAACCAGTAAAATAGCCCCCACTTTGGGCAGCAAAAAATTTAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E739617" ref_strand="+" ref_description="SGN-E739617 [LC18AG01]">
      <seq>gagggcagaacgctagaaggctgggagttagtcatgaaagagagactattaaatgttaaggaaatggcagatttctcgtctgaactgttatcgtggcttgatgacatgacttcagcaacggatttccaggaggcatttgatgttcttggtgttttgagtgatgtgctttctgggttcagtcgatgtgaagattatgtacatgctgcaatcagtggtgggaaaaactgatccatcaaaggtgtttctgtgacatgctttctgggttcagtcaatgtgaggattatgtacatggtggcgggccaaacagagaatttgtcgaaggctcacttcggttaagtattgtattccctagtcttcttacttcgatatatgtggaatattcttttgtaggtgcgtcttttattcccttgttacacgaattgcgagtgagccttctgagttttgtttctcaatgtagtcgaagtgtacatctttctgtatcgaccataacttaaaaccagtaaaatagcccccactttgggcagcaaaaaatttaaataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="1414" stop="276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1114" g_stop="576" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="539" r_length="539" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="540" polyA_stop="552"/>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E739617" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1114" e_stop="576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGGCAGAAAGCTAGAAGGCTGGGAGTTAGTCATGAAAGAGAGACTATTAAATGTTAAGGAAATGGCAGATTTCTCGTCTGAACTGTTATCGTGGCTTGATGACATGACTTCAGCAACGGATTTCCAGGAGGCATTTGATGTTCTTGGTGTTTTGAGTGATGTGCTTTCTGGGTTCAGTCGATGTGAAGATTATGTACATGCTGCAATCAGTGGTGGGAAAAACTGATCCATCAAAGGTGTTTCTGTGACATGCTTTCTGGGTTCAGTCAATGTGAGGATTATGTACATGGTGGCGGGCCAAACAGAGAATTTGTCGAAGGCTCACTTCGGTTAAGTATTGTATTCCCTAGTCTTCTTACTTCGATATATGTGGAATATTCTTTTGTAGGTGCGTCTTTTATTCCCTTGTTACACGAATTGCGAGTGAGCCTTCTGAGTTTTGTTTCTCAATGTAGTCGAAGTGTACATCTTTCTGTATCGACCATAACTTAAAACCAGTAAAATAGCCCCCACTTTGGGCAGCAAAAAATTTAAATA</genome_strand>
        <mrna_strand>GAGGGCAGAACGCTAGAAGGCTGGGAGTTAGTCATGAAAGAGAGACTATTAAATGTTAAGGAAATGGCAGATTTCTCGTCTGAACTGTTATCGTGGCTTGATGACATGACTTCAGCAACGGATTTCCAGGAGGCATTTGATGTTCTTGGTGTTTTGAGTGATGTGCTTTCTGGGTTCAGTCGATGTGAAGATTATGTACATGCTGCAATCAGTGGTGGGAAAAACTGATCCATCAAAGGTGTTTCTGTGACATGCTTTCTGGGTTCAGTCAATGTGAGGATTATGTACATGGTGGCGGGCCAAACAGAGAATTTGTCGAAGGCTCACTTCGGTTAAGTATTGTATTCCCTAGTCTTCTTACTTCGATATATGTGGAATATTCTTTTGTAGGTGCGTCTTTTATTCCCTTGTTACACGAATTGCGAGTGAGCCTTCTGAGTTTTGTTTCTCAATGTAGTCGAAGTGTACATCTTTCTGTATCGACCATAACTTAAAACCAGTAAAATAGCCCCCACTTTGGGCAGCAAAAAATTTAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E740040" ref_strand="+" ref_description="SGN-E740040 [LC19DD01]">
      <seq>gagggcagaacgctagaaggctgggagttagtcatgaaagagagactattaaatgttaaggaaatggcagatttctcgtctgaactgttatcgtggcttgatgacatgacttcagcaacggatttccaggaggcatttgatgttcttggtgttttgagtgatgtgctttctgggttcagtcgatgtgaagattatgtacatgctgcaatcagtggtgggaaaaactgatccatcaaaggtgtttctgtgacatgctttctgggttcagtcaatgtgaggattatgtacatggtggcgggccaaacagagaatttgtcgaaggctcacttcggttaagtattgtattccctagtcttcttacttcgatatatgtggaatattcttttgtaggtgcgtcttttattcccttgttacacgaattgcgagtgagccttctgagttttgtttctcaatgtagtcgaagtgtacatctttctgtatcgaccataacttaaaaccagtaaaatagcccccactttgggcagcaaaaaatttaaataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="1414" stop="276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1114" g_stop="576" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="539" r_length="539" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="540" polyA_stop="552"/>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E740040" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740040" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1114" e_stop="576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGGCAGAAAGCTAGAAGGCTGGGAGTTAGTCATGAAAGAGAGACTATTAAATGTTAAGGAAATGGCAGATTTCTCGTCTGAACTGTTATCGTGGCTTGATGACATGACTTCAGCAACGGATTTCCAGGAGGCATTTGATGTTCTTGGTGTTTTGAGTGATGTGCTTTCTGGGTTCAGTCGATGTGAAGATTATGTACATGCTGCAATCAGTGGTGGGAAAAACTGATCCATCAAAGGTGTTTCTGTGACATGCTTTCTGGGTTCAGTCAATGTGAGGATTATGTACATGGTGGCGGGCCAAACAGAGAATTTGTCGAAGGCTCACTTCGGTTAAGTATTGTATTCCCTAGTCTTCTTACTTCGATATATGTGGAATATTCTTTTGTAGGTGCGTCTTTTATTCCCTTGTTACACGAATTGCGAGTGAGCCTTCTGAGTTTTGTTTCTCAATGTAGTCGAAGTGTACATCTTTCTGTATCGACCATAACTTAAAACCAGTAAAATAGCCCCCACTTTGGGCAGCAAAAAATTTAAATA</genome_strand>
        <mrna_strand>GAGGGCAGAACGCTAGAAGGCTGGGAGTTAGTCATGAAAGAGAGACTATTAAATGTTAAGGAAATGGCAGATTTCTCGTCTGAACTGTTATCGTGGCTTGATGACATGACTTCAGCAACGGATTTCCAGGAGGCATTTGATGTTCTTGGTGTTTTGAGTGATGTGCTTTCTGGGTTCAGTCGATGTGAAGATTATGTACATGCTGCAATCAGTGGTGGGAAAAACTGATCCATCAAAGGTGTTTCTGTGACATGCTTTCTGGGTTCAGTCAATGTGAGGATTATGTACATGGTGGCGGGCCAAACAGAGAATTTGTCGAAGGCTCACTTCGGTTAAGTATTGTATTCCCTAGTCTTCTTACTTCGATATATGTGGAATATTCTTTTGTAGGTGCGTCTTTTATTCCCTTGTTACACGAATTGCGAGTGAGCCTTCTGAGTTTTGTTTCTCAATGTAGTCGAAGTGTACATCTTTCTGTATCGACCATAACTTAAAACCAGTAAAATAGCCCCCACTTTGGGCAGCAAAAAATTTAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E737947" ref_strand="+" ref_description="SGN-E737947 [LC11DC03]">
      <seq>ccgggctgcaggaattgagggcagaaagctagaaggctgggagttagtcatgaaagagagactattaaatgttaaggaaatggcagatttctcgtctgaactgttatcgtggcttgatgacatgacttcagcaacggatttccaggaggcatttgatgttcttggtgttttgagtgatgtgctttctgggttcagtcgatgtgaagattatgtacatgctgcaatcagtggtgggaaaaactgatccatcaaaggtgtttctgtgacatgctttctgggttcagtcaatgtgaggattatgtacatggtggcgggccaaacagagaatttgtcgaaggctcacttcggttaagtattgtattccctagtcttcttacttcgatatatgtggaatattcttttgtaggtgcgtcttttattcccttgttacacgaattgcgagtgagccttctgagttttgtttctcaatgtagtcgaagtgtacatctttctgtatcgaccataacttaaaaccagtaaaatagcccccactttgggcagcaaaaaatttaaataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="1414" stop="276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1114" g_stop="576" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="555" r_length="539" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="556" polyA_stop="568"/>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E737947" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1114" e_stop="576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGGCAGAAAGCTAGAAGGCTGGGAGTTAGTCATGAAAGAGAGACTATTAAATGTTAAGGAAATGGCAGATTTCTCGTCTGAACTGTTATCGTGGCTTGATGACATGACTTCAGCAACGGATTTCCAGGAGGCATTTGATGTTCTTGGTGTTTTGAGTGATGTGCTTTCTGGGTTCAGTCGATGTGAAGATTATGTACATGCTGCAATCAGTGGTGGGAAAAACTGATCCATCAAAGGTGTTTCTGTGACATGCTTTCTGGGTTCAGTCAATGTGAGGATTATGTACATGGTGGCGGGCCAAACAGAGAATTTGTCGAAGGCTCACTTCGGTTAAGTATTGTATTCCCTAGTCTTCTTACTTCGATATATGTGGAATATTCTTTTGTAGGTGCGTCTTTTATTCCCTTGTTACACGAATTGCGAGTGAGCCTTCTGAGTTTTGTTTCTCAATGTAGTCGAAGTGTACATCTTTCTGTATCGACCATAACTTAAAACCAGTAAAATAGCCCCCACTTTGGGCAGCAAAAAATTTAAATA</genome_strand>
        <mrna_strand>GAGGGCAGAAAGCTAGAAGGCTGGGAGTTAGTCATGAAAGAGAGACTATTAAATGTTAAGGAAATGGCAGATTTCTCGTCTGAACTGTTATCGTGGCTTGATGACATGACTTCAGCAACGGATTTCCAGGAGGCATTTGATGTTCTTGGTGTTTTGAGTGATGTGCTTTCTGGGTTCAGTCGATGTGAAGATTATGTACATGCTGCAATCAGTGGTGGGAAAAACTGATCCATCAAAGGTGTTTCTGTGACATGCTTTCTGGGTTCAGTCAATGTGAGGATTATGTACATGGTGGCGGGCCAAACAGAGAATTTGTCGAAGGCTCACTTCGGTTAAGTATTGTATTCCCTAGTCTTCTTACTTCGATATATGTGGAATATTCTTTTGTAGGTGCGTCTTTTATTCCCTTGTTACACGAATTGCGAGTGAGCCTTCTGAGTTTTGTTTCTCAATGTAGTCGAAGTGTACATCTTTCTGTATCGACCATAACTTAAAACCAGTAAAATAGCCCCCACTTTGGGCAGCAAAAAATTTAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E740126" ref_strand="+" ref_description="SGN-E740126 [LC20AH02]">
      <seq>gagggcagaaagctagaaggctgggagttagtcatgaaagagagactattaaatgttaaggaaatggcagatttctcgtctgaactgttatcgtggcttgatgacatgacttcagcaacggatttccaggaggcatttgatgttcttggtgttttgagtgatgtgctttctgggttcagtcgatgtgaagattatgtacatgctgcaatcagtggtgggaaaaactgatccatcaaaggtgtttctgtgacatgctttctgggttcagtcaatgtgaggattatgtacatggtggcgggccaaacagagaatttgtcgaaggctcacttcggttaagtattgtattccctagtcttcttacttcgatatatgtggaatattcttttgtaggtgcgtcttttattcccttgttacacgaattgcgagtgagccttctgagttttgtttctcaatgtagtcgaagtgtacatctttctgtatcgaccataacttaaaaccagtaaaatagcccccactttgggcagcaaaaaatttaaataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="1414" stop="276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1114" g_stop="576" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="539" r_length="539" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="540" polyA_stop="552"/>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E740126" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740126" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1114" e_stop="576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGGCAGAAAGCTAGAAGGCTGGGAGTTAGTCATGAAAGAGAGACTATTAAATGTTAAGGAAATGGCAGATTTCTCGTCTGAACTGTTATCGTGGCTTGATGACATGACTTCAGCAACGGATTTCCAGGAGGCATTTGATGTTCTTGGTGTTTTGAGTGATGTGCTTTCTGGGTTCAGTCGATGTGAAGATTATGTACATGCTGCAATCAGTGGTGGGAAAAACTGATCCATCAAAGGTGTTTCTGTGACATGCTTTCTGGGTTCAGTCAATGTGAGGATTATGTACATGGTGGCGGGCCAAACAGAGAATTTGTCGAAGGCTCACTTCGGTTAAGTATTGTATTCCCTAGTCTTCTTACTTCGATATATGTGGAATATTCTTTTGTAGGTGCGTCTTTTATTCCCTTGTTACACGAATTGCGAGTGAGCCTTCTGAGTTTTGTTTCTCAATGTAGTCGAAGTGTACATCTTTCTGTATCGACCATAACTTAAAACCAGTAAAATAGCCCCCACTTTGGGCAGCAAAAAATTTAAATA</genome_strand>
        <mrna_strand>GAGGGCAGAAAGCTAGAAGGCTGGGAGTTAGTCATGAAAGAGAGACTATTAAATGTTAAGGAAATGGCAGATTTCTCGTCTGAACTGTTATCGTGGCTTGATGACATGACTTCAGCAACGGATTTCCAGGAGGCATTTGATGTTCTTGGTGTTTTGAGTGATGTGCTTTCTGGGTTCAGTCGATGTGAAGATTATGTACATGCTGCAATCAGTGGTGGGAAAAACTGATCCATCAAAGGTGTTTCTGTGACATGCTTTCTGGGTTCAGTCAATGTGAGGATTATGTACATGGTGGCGGGCCAAACAGAGAATTTGTCGAAGGCTCACTTCGGTTAAGTATTGTATTCCCTAGTCTTCTTACTTCGATATATGTGGAATATTCTTTTGTAGGTGCGTCTTTTATTCCCTTGTTACACGAATTGCGAGTGAGCCTTCTGAGTTTTGTTTCTCAATGTAGTCGAAGTGTACATCTTTCTGTATCGACCATAACTTAAAACCAGTAAAATAGCCCCCACTTTGGGCAGCAAAAAATTTAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E713285" ref_strand="+" ref_description="SGN-E713285 [FB08AH09]">
      <seq>gtacaagtacatctgcttctgaggctgggggatcaattgagttattctcaactattcaaccaatgcttgtctacactggtttgatagaacaactgcagcgcttctttaaggtaaaaaaatcatctagtgcgaccaccttgcgaacccaagggacttccaagaatgtggaagatgatgacgagggcagaaagctagaaggctgggagttagtcatgaaagagagactattaaatgttaaggaaatggcagatttctcgtctgaactgttatcgtggcttgatgacatgacttcagcaacggatttccaggaggcatttgatgttcttggtgttttgagtgatgtgctttctgggttcagtcgatgtgaagattatgtacatgctgcaatcagtggtgggaaaaactgatccatcaaaggtgtttctgtgacatgctttctgggttcagtcaatgtgaggattatgtacatggtggcgggccaaacagagaatttgtcgaaggctcacttcggttaagtattgtattccctagtcttcttacttcgatatatgtggaatattcttttgtaggtgcgtcttttattcccttgttannaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="1593" stop="402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1293" g_stop="706" g_length="588"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="588" r_length="588" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="595" polyA_stop="618"/>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E713285" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713285" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1293" e_stop="706"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACAAGTACATCTGCTTCTGAGGCTGGGGGATCAATTGAGTTATTCTCAACTATTCAACCAATGCTTGTCTACACTGGTTTGATAGAACAACTGCAGCGCTTCTTTAAGGTAAAAAAATCATCTAGTGCGACCACCTTGCGAACCCAAGGGACTTCCAAGAATGTGGAAGATGATGACGAGGGCAGAAAGCTAGAAGGCTGGGAGTTAGTCATGAAAGAGAGACTATTAAATGTTAAGGAAATGGCAGATTTCTCGTCTGAACTGTTATCGTGGCTTGATGACATGACTTCAGCAACGGATTTCCAGGAGGCATTTGATGTTCTTGGTGTTTTGAGTGATGTGCTTTCTGGGTTCAGTCGATGTGAAGATTATGTACATGCTGCAATCAGTGGTGGGAAAAACTGATCCATCAAAGGTGTTTCTGTGACATGCTTTCTGGGTTCAGTCAATGTGAGGATTATGTACATGGTGGCGGGCCAAACAGAGAATTTGTCGAAGGCTCACTTCGGTTAAGTATTGTATTCCCTAGTCTTCTTACTTCGATATATGTGGAATATTCTTTTGTAGGTGCGTCTTTTATTCCCTT</genome_strand>
        <mrna_strand>GTACAAGTACATCTGCTTCTGAGGCTGGGGGATCAATTGAGTTATTCTCAACTATTCAACCAATGCTTGTCTACACTGGTTTGATAGAACAACTGCAGCGCTTCTTTAAGGTAAAAAAATCATCTAGTGCGACCACCTTGCGAACCCAAGGGACTTCCAAGAATGTGGAAGATGATGACGAGGGCAGAAAGCTAGAAGGCTGGGAGTTAGTCATGAAAGAGAGACTATTAAATGTTAAGGAAATGGCAGATTTCTCGTCTGAACTGTTATCGTGGCTTGATGACATGACTTCAGCAACGGATTTCCAGGAGGCATTTGATGTTCTTGGTGTTTTGAGTGATGTGCTTTCTGGGTTCAGTCGATGTGAAGATTATGTACATGCTGCAATCAGTGGTGGGAAAAACTGATCCATCAAAGGTGTTTCTGTGACATGCTTTCTGGGTTCAGTCAATGTGAGGATTATGTACATGGTGGCGGGCCAAACAGAGAATTTGTCGAAGGCTCACTTCGGTTAAGTATTGTATTCCCTAGTCTTCTTACTTCGATATATGTGGAATATTCTTTTGTAGGTGCGTCTTTTATTCCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E202921" ref_strand="+" ref_description="SGN-E202921 [cLEB-1-F12]">
      <seq>gcacgagcaagaatgtggaagatgatgacgagggcagaaagctagaaggctgggagttagtcatgaaagagagactattaaatgttaaggaaatggcagatttctcgtctgaactgttatcgtggcttgatgacatgacttcagcaacggatttccaggaggcatttgatgttcttggtgttttgagtgatgtgctttctgggttcagtcgatgtgaagattatgtacatgctgcaatcagtggtgggaaaaactgatccatcaaaggtgtttctgtgacatgctttctgggttcagtcaatgtgaggattatgtacatggtggcgggccaaacagagaatttgtcgaaggctcacttcggttaagtattgtattccctagtcttcttacttcgatatatgtggaatattcttttgtaggtgcgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="1436" stop="417"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1143" g_stop="717" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E202921" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1143" e_stop="717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACTTCCAAGAATGTGGAAGATGATGACGAGGGCAGAAAGCTAGAAGGCTGGGAGTTAGTCATGAAAGAGAGACTATTAAATGTTAAGGAAATGGCAGATTTCTCGTCTGAACTGTTATCGTGGCTTGATGACATGACTTCAGCAACGGATTTCCAGGAGGCATTTGATGTTCTTGGTGTTTTGAGTGATGTGCTTTCTGGGTTCAGTCGATGTGAAGATTATGTACATGCTGCAATCAGTGGTGGGAAAAACTGATCCATCAAAGGTGTTTCTGTGACATGCTTTCTGGGTTCAGTCAATGTGAGGATTATGTACATGGTGGCGGGCCAAACAGAGAATTTGTCGAAGGCTCACTTCGGTTAAGTATTGTATTCCCTAGTCTTCTTACTTCGATATATGTGGAATATTCTTTTGTAGGTGCGTCT</genome_strand>
        <mrna_strand>GCACGAGCAAGAATGTGGAAGATGATGACGAGGGCAGAAAGCTAGAAGGCTGGGAGTTAGTCATGAAAGAGAGACTATTAAATGTTAAGGAAATGGCAGATTTCTCGTCTGAACTGTTATCGTGGCTTGATGACATGACTTCAGCAACGGATTTCCAGGAGGCATTTGATGTTCTTGGTGTTTTGAGTGATGTGCTTTCTGGGTTCAGTCGATGTGAAGATTATGTACATGCTGCAATCAGTGGTGGGAAAAACTGATCCATCAAAGGTGTTTCTGTGACATGCTTTCTGGGTTCAGTCAATGTGAGGATTATGTACATGGTGGCGGGCCAAACAGAGAATTTGTCGAAGGCTCACTTCGGTTAAGTATTGTATTCCCTAGTCTTCTTACTTCGATATATGTGGAATATTCTTTTGTAGGTGCGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E434404" ref_strand="+" ref_description="SGN-E434404 [STM-59-L2]">
      <seq>gtttgatagaacagctgcagcgcttcttcaaggtaaaaaaatcacctagtgcgaccaccttgcaaacccaagggacttccaagaatgtggaagatgatgacgagggcagaaagctagaaggctgggaggtagtcatgaaagagagactattaaatgttaaggaaatggtagatttctcgtctgaactgttatcatggcttgatgacatgacttcagcaacggatttccaggaggcatttgatgttcttggtgttttgagtgatgttctttctgggttcagtcgatgtgaggattatgtacatgctgcaatcagtggtgggaaaaactgatctatcaaagctgtttttgtgatgtgctttctggggtccgtccatgtgaggattaatggccttgtttctgctcggtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="1515" stop="522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1215" g_stop="833" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="383" r_length="383" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E434404" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E434404" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1215" e_stop="833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGATAGAACAACTGCAGCGCTTCTTTAAGGTAAAAAAATCATCTAGTGCGACCACCTTGCGAACCCAAGGGACTTCCAAGAATGTGGAAGATGATGACGAGGGCAGAAAGCTAGAAGGCTGGGAGTTAGTCATGAAAGAGAGACTATTAAATGTTAAGGAAATGGCAGATTTCTCGTCTGAACTGTTATCGTGGCTTGATGACATGACTTCAGCAACGGATTTCCAGGAGGCATTTGATGTTCTTGGTGTTTTGAGTGATGTGCTTTCTGGGTTCAGTCGATGTGAAGATTATGTACATGCTGCAATCAGTGGTGGGAAAAACTGATCCATCAAAGGTGTTTCTGTGACATGCTTTCTGGGTTCAGTCAATGTGAGGATT</genome_strand>
        <mrna_strand>GTTTGATAGAACAGCTGCAGCGCTTCTTCAAGGTAAAAAAATCACCTAGTGCGACCACCTTGCAAACCCAAGGGACTTCCAAGAATGTGGAAGATGATGACGAGGGCAGAAAGCTAGAAGGCTGGGAGGTAGTCATGAAAGAGAGACTATTAAATGTTAAGGAAATGGTAGATTTCTCGTCTGAACTGTTATCATGGCTTGATGACATGACTTCAGCAACGGATTTCCAGGAGGCATTTGATGTTCTTGGTGTTTTGAGTGATGTTCTTTCTGGGTTCAGTCGATGTGAGGATTATGTACATGCTGCAATCAGTGGTGGGAAAAACTGATCTATCAAAGCTGTTTTTGTGATGTGCTTTCTGGGGTCCGTCCATGTGAGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E213012" ref_strand="+" ref_description="SGN-E213012 [cLEC-72-M2]">
      <seq>aggggtggtggaaaagacagtaatgctcgatttttgcctttcatgatgcaaatggcgcgtcaccttcttgatcatgattcttctcagcagcatatcatgattaagtctatctcaacctatttaagttctcctgcatcagaatccagagcctccactacctctggaactcagacttccgctggtacagaggagactgtccagttcatgatggttacctcacttctttcagaatcctatgagtcgtggctgcagaatcgcgcttcctttttacaacgaggtatataccatgcgtatatccagcggactcatggtaggcctgtgcctcgctcgtcccccaatatgtctggggctttgaaaacagagtcgggaagtacaagtacatctgcttctgaggctgggggatcaattgagttattctcaactattcaaccaatgcttgtctacactggtttgatagaacaactgcagcgcttctttaaggtaaaaaaatcatctagtgcgaccaccttgcgaacccaagggacttccaagaatgtggaagatgatgacgagggcagaaagctagaaggctgggagttagtcatgaaagagagactattaaatgttaaggaaatggcagatttctcgtctgaactgttatcgtggcttgatgacatgacttcagcaacggatttccaggaggcatttgatgttcttggtgttttgagtgatgtgctttctgggttcagtcgatgtgaagattatgtacatgctgcaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="1963" stop="605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1663" g_stop="905" g_length="759"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="759" r_length="759" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E213012" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1663" e_stop="905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGGTGGTGGAAAAGACAGTAATGCTCGATTTTTGCCTTTCATGATGCAAATGGCGCGTCACCTTCTTGATCATGATTCTTCTCAGCAGCATATCATGATTAAGTCTATCTCAACCTATTTAAGTTCTCCTGCATCAGAATCCAGAGCCTCCACTACCTCTGGAACTCAGACTTCCGCTGGTACAGAGGAGACTGTCCAGTTCATGATGGTTACCTCACTTCTTTCAGAATCCTATGAGTCGTGGCTGCAGAATCGCGCTTCCTTTTTACAACGAGGTATATACCATGCGTATATCCAGCGGACTCATGGTAGGCCTGTGCCTCGCTCGTCCCCCAATATGTCTGGGGCTTTGAAAACAGAGTCGGGAAGTACAAGTACATCTGCTTCTGAGGCTGGGGGATCAATTGAGTTATTCTCAACTATTCAACCAATGCTTGTCTACACTGGTTTGATAGAACAACTGCAGCGCTTCTTTAAGGTAAAAAAATCATCTAGTGCGACCACCTTGCGAACCCAAGGGACTTCCAAGAATGTGGAAGATGATGACGAGGGCAGAAAGCTAGAAGGCTGGGAGTTAGTCATGAAAGAGAGACTATTAAATGTTAAGGAAATGGCAGATTTCTCGTCTGAACTGTTATCGTGGCTTGATGACATGACTTCAGCAACGGATTTCCAGGAGGCATTTGATGTTCTTGGTGTTTTGAGTGATGTGCTTTCTGGGTTCAGTCGATGTGAAGATTATGTACATGCTGCAATC</genome_strand>
        <mrna_strand>AGGGGTGGTGGAAAAGACAGTAATGCTCGATTTTTGCCTTTCATGATGCAAATGGCGCGTCACCTTCTTGATCATGATTCTTCTCAGCAGCATATCATGATTAAGTCTATCTCAACCTATTTAAGTTCTCCTGCATCAGAATCCAGAGCCTCCACTACCTCTGGAACTCAGACTTCCGCTGGTACAGAGGAGACTGTCCAGTTCATGATGGTTACCTCACTTCTTTCAGAATCCTATGAGTCGTGGCTGCAGAATCGCGCTTCCTTTTTACAACGAGGTATATACCATGCGTATATCCAGCGGACTCATGGTAGGCCTGTGCCTCGCTCGTCCCCCAATATGTCTGGGGCTTTGAAAACAGAGTCGGGAAGTACAAGTACATCTGCTTCTGAGGCTGGGGGATCAATTGAGTTATTCTCAACTATTCAACCAATGCTTGTCTACACTGGTTTGATAGAACAACTGCAGCGCTTCTTTAAGGTAAAAAAATCATCTAGTGCGACCACCTTGCGAACCCAAGGGACTTCCAAGAATGTGGAAGATGATGACGAGGGCAGAAAGCTAGAAGGCTGGGAGTTAGTCATGAAAGAGAGACTATTAAATGTTAAGGAAATGGCAGATTTCTCGTCTGAACTGTTATCGTGGCTTGATGACATGACTTCAGCAACGGATTTCCAGGAGGCATTTGATGTTCTTGGTGTTTTGAGTGATGTGCTTTCTGGGTTCAGTCGATGTGAAGATTATGTACATGCTGCAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E314985" ref_strand="+" ref_description="SGN-E314985 [cTOA-31-I6]">
      <seq>gcaaatggcgcgtcaccttcttgatcatgattcttctcagcagcatatcatgattaagtctatctcaacctatttaagttctcctgcatcagaatccagagcctccactacctctggaactcagacttccgctggtacagaggagactgtccagttcatgatggttacctcacttctttcagaatcctatgagtcgtggctgcagaatcgcgcttcctttttacaacgaggtatataccatgcgtatatccagcggactcatggtaggcctgtgcctcgctcgccccccaatatgtctggggctttgaaaacagagtcgggaagtacaagtacatctgcttctgaggctgggggatcaattgagttattctcaactattcaaccaatgcttgtctacactggtttgatagaacaactgcagcgcttctttaaggtaaaaaaatcatctagtgcgaccaccttgcgaacccaagggacttccaagaatgtggaagatgatgacgagggcagaaagctagaaggctgggagttagtcatgaaagagagactattaaatgttaaggaaatggcagatttctcgtctgaactgttatcgtggcttgatgacatgacttcagcaacggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="1916" stop="691"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1616" g_stop="991" g_length="626"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="626" r_length="626" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E314985" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314985" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1616" e_stop="991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAATGGCGCGTCACCTTCTTGATCATGATTCTTCTCAGCAGCATATCATGATTAAGTCTATCTCAACCTATTTAAGTTCTCCTGCATCAGAATCCAGAGCCTCCACTACCTCTGGAACTCAGACTTCCGCTGGTACAGAGGAGACTGTCCAGTTCATGATGGTTACCTCACTTCTTTCAGAATCCTATGAGTCGTGGCTGCAGAATCGCGCTTCCTTTTTACAACGAGGTATATACCATGCGTATATCCAGCGGACTCATGGTAGGCCTGTGCCTCGCTCGTCCCCCAATATGTCTGGGGCTTTGAAAACAGAGTCGGGAAGTACAAGTACATCTGCTTCTGAGGCTGGGGGATCAATTGAGTTATTCTCAACTATTCAACCAATGCTTGTCTACACTGGTTTGATAGAACAACTGCAGCGCTTCTTTAAGGTAAAAAAATCATCTAGTGCGACCACCTTGCGAACCCAAGGGACTTCCAAGAATGTGGAAGATGATGACGAGGGCAGAAAGCTAGAAGGCTGGGAGTTAGTCATGAAAGAGAGACTATTAAATGTTAAGGAAATGGCAGATTTCTCGTCTGAACTGTTATCGTGGCTTGATGACATGACTTCAGCAACGGATT</genome_strand>
        <mrna_strand>GCAAATGGCGCGTCACCTTCTTGATCATGATTCTTCTCAGCAGCATATCATGATTAAGTCTATCTCAACCTATTTAAGTTCTCCTGCATCAGAATCCAGAGCCTCCACTACCTCTGGAACTCAGACTTCCGCTGGTACAGAGGAGACTGTCCAGTTCATGATGGTTACCTCACTTCTTTCAGAATCCTATGAGTCGTGGCTGCAGAATCGCGCTTCCTTTTTACAACGAGGTATATACCATGCGTATATCCAGCGGACTCATGGTAGGCCTGTGCCTCGCTCGCCCCCCAATATGTCTGGGGCTTTGAAAACAGAGTCGGGAAGTACAAGTACATCTGCTTCTGAGGCTGGGGGATCAATTGAGTTATTCTCAACTATTCAACCAATGCTTGTCTACACTGGTTTGATAGAACAACTGCAGCGCTTCTTTAAGGTAAAAAAATCATCTAGTGCGACCACCTTGCGAACCCAAGGGACTTCCAAGAATGTGGAAGATGATGACGAGGGCAGAAAGCTAGAAGGCTGGGAGTTAGTCATGAAAGAGAGACTATTAAATGTTAAGGAAATGGCAGATTTCTCGTCTGAACTGTTATCGTGGCTTGATGACATGACTTCAGCAACGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E243069" ref_strand="+" ref_description="SGN-E243069 [cLEF-1-L15]">
      <seq>acagaggagactgtccagttcatgatggttacctcacttctttcagaatcctatgagtcgtggctgcagaatcgcgcttcctttttacaacgaggtatataccatgcgtatatccagcggactcatggtaggcctgtgcctcgctcgtcccccaatatgtctggggctttgaaaacagagtcgggaagtacaagtacatctgcttctgaggctgggggatcaattgagttattctcaactattcaaccaatgcttgtctacactggtttgatagaacaactgcagcgcttctttaaggtaaaaaaatcatctagtgcgaccaccttgcgaacccaagggacttccaagaatgtggaagatgatgacgagggcagaaagctagaaggctgggagttagtcatgaaagagagactattaaatgttaaggaaatggcagatttctcgtctgaactgttatcgtggctggatgacatgacttcagcaacgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="1780" stop="693"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1480" g_stop="993" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="488" r_length="488" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E243069" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243069" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1480" e_stop="993"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGAGGAGACTGTCCAGTTCATGATGGTTACCTCACTTCTTTCAGAATCCTATGAGTCGTGGCTGCAGAATCGCGCTTCCTTTTTACAACGAGGTATATACCATGCGTATATCCAGCGGACTCATGGTAGGCCTGTGCCTCGCTCGTCCCCCAATATGTCTGGGGCTTTGAAAACAGAGTCGGGAAGTACAAGTACATCTGCTTCTGAGGCTGGGGGATCAATTGAGTTATTCTCAACTATTCAACCAATGCTTGTCTACACTGGTTTGATAGAACAACTGCAGCGCTTCTTTAAGGTAAAAAAATCATCTAGTGCGACCACCTTGCGAACCCAAGGGACTTCCAAGAATGTGGAAGATGATGACGAGGGCAGAAAGCTAGAAGGCTGGGAGTTAGTCATGAAAGAGAGACTATTAAATGTTAAGGAAATGGCAGATTTCTCGTCTGAACTGTTATCGTGGCTTGATGACATGACTTCAGCAACGGA</genome_strand>
        <mrna_strand>ACAGAGGAGACTGTCCAGTTCATGATGGTTACCTCACTTCTTTCAGAATCCTATGAGTCGTGGCTGCAGAATCGCGCTTCCTTTTTACAACGAGGTATATACCATGCGTATATCCAGCGGACTCATGGTAGGCCTGTGCCTCGCTCGTCCCCCAATATGTCTGGGGCTTTGAAAACAGAGTCGGGAAGTACAAGTACATCTGCTTCTGAGGCTGGGGGATCAATTGAGTTATTCTCAACTATTCAACCAATGCTTGTCTACACTGGTTTGATAGAACAACTGCAGCGCTTCTTTAAGGTAAAAAAATCATCTAGTGCGACCACCTTGCGAACCCAAGGGACTTCCAAGAATGTGGAAGATGATGACGAGGGCAGAAAGCTAGAAGGCTGGGAGTTAGTCATGAAAGAGAGACTATTAAATGTTAAGGAAATGGCAGATTTCTCGTCTGAACTGTTATCGTGGCTGGATGACATGACTTCAGCAACGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E319307" ref_strand="+" ref_description="SGN-E319307 [cTOB-16-F18]">
      <seq>agtaatgctcgatttttgcctttcatgatgcaaatggcgcgtcaccttcttgatcatgattcttctcagcagcatatcatgattaagtctatctcaacctatttaagttctcctgcatcagaatccagagcctccactacctctggaactcagacttccgctggtacagaggagactgtccagttcatgatggttacctcacttctttcagaatcctatgagtcgtggctgcagaatcgcgcttcctttttacaacgaggtatataccatgcgtatatccagcggactcatggtaggcctgtgcctcgctcgtcccccaatatgtctggggctttgaaaacagagtcgggaagtacaagtacatctgcttctgaggctgggggatcaattgagttattctcaactattcaaccaatgcttgtctacactggtttgatagaacaactgcagcgcttctttaacgtaaaaaaatcatctagtgcgaccaccttgcgaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="1945" stop="848"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1645" g_stop="1148" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="498" r_length="498" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E319307" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319307" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1645" e_stop="1148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATGCTCGATTTTTGCCTTTCATGATGCAAATGGCGCGTCACCTTCTTGATCATGATTCTTCTCAGCAGCATATCATGATTAAGTCTATCTCAACCTATTTAAGTTCTCCTGCATCAGAATCCAGAGCCTCCACTACCTCTGGAACTCAGACTTCCGCTGGTACAGAGGAGACTGTCCAGTTCATGATGGTTACCTCACTTCTTTCAGAATCCTATGAGTCGTGGCTGCAGAATCGCGCTTCCTTTTTACAACGAGGTATATACCATGCGTATATCCAGCGGACTCATGGTAGGCCTGTGCCTCGCTCGTCCCCCAATATGTCTGGGGCTTTGAAAACAGAGTCGGGAAGTACAAGTACATCTGCTTCTGAGGCTGGGGGATCAATTGAGTTATTCTCAACTATTCAACCAATGCTTGTCTACACTGGTTTGATAGAACAACTGCAGCGCTTCTTTAAGGTAAAAAAATCATCTAGTGCGACCACCTTGCGAACC</genome_strand>
        <mrna_strand>AGTAATGCTCGATTTTTGCCTTTCATGATGCAAATGGCGCGTCACCTTCTTGATCATGATTCTTCTCAGCAGCATATCATGATTAAGTCTATCTCAACCTATTTAAGTTCTCCTGCATCAGAATCCAGAGCCTCCACTACCTCTGGAACTCAGACTTCCGCTGGTACAGAGGAGACTGTCCAGTTCATGATGGTTACCTCACTTCTTTCAGAATCCTATGAGTCGTGGCTGCAGAATCGCGCTTCCTTTTTACAACGAGGTATATACCATGCGTATATCCAGCGGACTCATGGTAGGCCTGTGCCTCGCTCGTCCCCCAATATGTCTGGGGCTTTGAAAACAGAGTCGGGAAGTACAAGTACATCTGCTTCTGAGGCTGGGGGATCAATTGAGTTATTCTCAACTATTCAACCAATGCTTGTCTACACTGGTTTGATAGAACAACTGCAGCGCTTCTTTAACGTAAAAAAATCATCTAGTGCGACCACCTTGCGAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E707015" ref_strand="+" ref_description="SGN-E707015 [FA31DC09]">
      <seq>ggcgtgctgatggaagtcggctccggttgttaacttacgacattgttttgatgcttgctcgatttgccactggtgcttcatttagtgcagattgcaggggtggtggaaaagacagtaatgctcgatttttgcctttcatgatgcaaatggcgcgtcaccttcttgatcatgattcttctcagcagcatatcatgattaagtctatctcaacctatttaagttctcctgcatcagaatccagagcctccactacctctggaactcagacttccgctggtacagaggagactgtccagttcatgatggttacctcacttctttcagaatcctatgagtcgtggctgcagaatcgcgcttcctttttacaacgaggtatataccatgcgtatatccagcggactcatggtaggcctgtgcctcgctcgtcccccaatatgtctggggctttgaaaacagagtcgggaagtacaagtacatctgcttctgaggctgggggatcaattgagttattctcaactattcaaccaatgcttgtctacactggtttgatagaacaactgcagcgcttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="3267" stop="887"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2967" g_stop="2918" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2917" i_stop="1709" i_length="1209">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1708" g_stop="1187" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="572" r_length="522" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E707015" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2967" e_stop="2918"/>
          <exon e_start="1708" e_stop="1187"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGTGCTGATGGAAGTCGGCTCCGGTTGTTAACTTACGACATTGTTTTGGTGAGTTTCTATCTTTGTTATTCCTTTCTATCATGTTTTCATCTCTCCACTCCTGATCTTCTCTTTTTATCTCTATCCCTCTTTTTTCTTTATCTTTTTCTTTTTTAAGAAGGTAACATATTTGTGTATTCCTTTACACCAAAAATCAAACAGCGCTAAGCACATCTTCTGGAATAGTTGGCTTTATCTTGAAAACATCTTTGGTTTCTCTCTTCTCGAACTGTCCCCAAATGCAAACTGGAATATTCTTCCATCTCATTTTGTGAATTGCATTACTGCCTTCTCTGTTCCAGCCTCTTTTATTTTAATCCCTCCCTTTCCGTGTGGTTGGGGTCGAGGAGGGAGGAACGGTTTTGTTGGACGATGAGGTAGGTTAGGGGTGTTAAATGGGAGGGTTGGGTTAATTTGATTCCGAAGGTCTGCATACACTCTACCCTCCCCAAATCCCACTTTATGGGATTTCACTGGGTATGTTGTTATTGTTGATTTTGTGTGATTCCTATTTTGTTGATTGAGAAGGTTAAATTGGTTCAATAAAGTACGAAAAAGTTCTTGCACTTTTTGAGATTATAATTTTGTTCATATCATTCTTGAAAGAAGATCTGAAAACTTGGTCAAAAATGTGTTTCATTTTCTCTAAATGGCAAATGGACTTCCCTCCGGATGGAAAAATGAGACCTCTGTTTTGCTTTCTAAATCCTTTTCCAATTTATTCAACTTTAATTATAATCAATTTATTCTACTTTTTCCCATCGTGATTTGATAGAGTAGAATATTCGCAGAAAGGTAAGAATATGTGTTGAACATATTCCAAATCAGACCATCTGATGTTTAAAATTTGACAGCATTAAGGTCAGAAACATAACTAAGTCAACATTACCTCTGTTAGAACTTGGAAGTACAAAAAGTCGAGAACCCACAAGCTGCTTAGAAATTTATCATTCCTGCTGGGGTTCAAAAGTTGCTAATAGTCACCAACTTGGATAATTAATTATGACCTGTTGCATTGGGTCTTAAAACGTTAGGTAACACTTGTATCAAACCCAATCTGACCCAATATTTTGATGGGTCAACCCATCTTGACCCAATCAGTTCAAGCTTTGGCGGGTTACATATTCTTGGGCTGATTTTTCCACTTCTGAAGTAGGTGAAGCTTCTTACAACAGAGACTGTTGATTTTAATGCAAATCTTTTTTGGGTGACATGCAGATGCTTGCTCGATTTGCCACTGGTGCTTCATTTAGTGCAGATTGCAGGGGTGGTGGAAAAGACAGTAATGCTCGATTTTTGCCTTTCATGATGCAAATGGCGCGTCACCTTCTTGATCATGATTCTTCTCAGCAGCATATCATGATTAAGTCTATCTCAACCTATTTAAGTTCTCCTGCATCAGAATCCAGAGCCTCCACTACCTCTGGAACTCAGACTTCCGCTGGTACAGAGGAGACTGTCCAGTTCATGATGGTTACCTCACTTCTTTCAGAATCCTATGAGTCGTGGCTGCAGAATCGCGCTTCCTTTTTACAACGAGGTATATACCATGCGTATATCCAGCGGACTCATGGTAGGCCTGTGCCTCGCTCGTCCCCCAATATGTCTGGGGCTTTGAAAACAGAGTCGGGAAGTACAAGTACATCTGCTTCTGAGGCTGGGGGATCAATTGAGTTATTCTCAACTATTCAACCAATGCTTGTCTACACTGGTTTGATAGAACAACTGCAGCGCTTCTTT</genome_strand>
        <mrna_strand>GGCGTGCTGATGGAAGTCGGCTCCGGTTGTTAACTTACGACATTGTTTTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTTGCTCGATTTGCCACTGGTGCTTCATTTAGTGCAGATTGCAGGGGTGGTGGAAAAGACAGTAATGCTCGATTTTTGCCTTTCATGATGCAAATGGCGCGTCACCTTCTTGATCATGATTCTTCTCAGCAGCATATCATGATTAAGTCTATCTCAACCTATTTAAGTTCTCCTGCATCAGAATCCAGAGCCTCCACTACCTCTGGAACTCAGACTTCCGCTGGTACAGAGGAGACTGTCCAGTTCATGATGGTTACCTCACTTCTTTCAGAATCCTATGAGTCGTGGCTGCAGAATCGCGCTTCCTTTTTACAACGAGGTATATACCATGCGTATATCCAGCGGACTCATGGTAGGCCTGTGCCTCGCTCGTCCCCCAATATGTCTGGGGCTTTGAAAACAGAGTCGGGAAGTACAAGTACATCTGCTTCTGAGGCTGGGGGATCAATTGAGTTATTCTCAACTATTCAACCAATGCTTGTCTACACTGGTTTGATAGAACAACTGCAGCGCTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E305180" ref_strand="+" ref_description="SGN-E305180 [cLEY-18-D20]">
      <seq>ttgggcgtgctgatggaagtcggctccggttgttaacttacgacattgttttgatgcttgctcgatttgccactggtgcttcatttagtgcagattgcaggggtggtggaaaagacagtaatgctcgatttttgcctttcatgatgcaaatggcgcgtcaccttcttgatcatgattcttctcagcagcatatcatgattaagtctatctcaacctatttaagttcttctgcatcagaatccagagcctccactacctctggaactcagacttccgctggtacagaggagactgtccagttcatgatggttacctcacttctttcagaatcctatgagtcgtggctgcagaatcgcgcttcctttttacaacgaggtatataccatgcgtatatccagcggactcatggtaggcctgtgcctcgctcgtcccccaatatgtctggggctatgaaaacagagtcgggaagtacaagtacatctgcttctgaggctgggggatcaattgagttattctcaactattcaaccaatgcttgtctacactggtttgatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="3270" stop="907"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2970" g_stop="2918" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2917" i_stop="1709" i_length="1209">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1708" g_stop="1207" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="555" r_length="502" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E305180" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2970" e_stop="2918"/>
          <exon e_start="1708" e_stop="1207"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGGCGTGCTGATGGAAGTCGGCTCCGGTTGTTAACTTACGACATTGTTTTGGTGAGTTTCTATCTTTGTTATTCCTTTCTATCATGTTTTCATCTCTCCACTCCTGATCTTCTCTTTTTATCTCTATCCCTCTTTTTTCTTTATCTTTTTCTTTTTTAAGAAGGTAACATATTTGTGTATTCCTTTACACCAAAAATCAAACAGCGCTAAGCACATCTTCTGGAATAGTTGGCTTTATCTTGAAAACATCTTTGGTTTCTCTCTTCTCGAACTGTCCCCAAATGCAAACTGGAATATTCTTCCATCTCATTTTGTGAATTGCATTACTGCCTTCTCTGTTCCAGCCTCTTTTATTTTAATCCCTCCCTTTCCGTGTGGTTGGGGTCGAGGAGGGAGGAACGGTTTTGTTGGACGATGAGGTAGGTTAGGGGTGTTAAATGGGAGGGTTGGGTTAATTTGATTCCGAAGGTCTGCATACACTCTACCCTCCCCAAATCCCACTTTATGGGATTTCACTGGGTATGTTGTTATTGTTGATTTTGTGTGATTCCTATTTTGTTGATTGAGAAGGTTAAATTGGTTCAATAAAGTACGAAAAAGTTCTTGCACTTTTTGAGATTATAATTTTGTTCATATCATTCTTGAAAGAAGATCTGAAAACTTGGTCAAAAATGTGTTTCATTTTCTCTAAATGGCAAATGGACTTCCCTCCGGATGGAAAAATGAGACCTCTGTTTTGCTTTCTAAATCCTTTTCCAATTTATTCAACTTTAATTATAATCAATTTATTCTACTTTTTCCCATCGTGATTTGATAGAGTAGAATATTCGCAGAAAGGTAAGAATATGTGTTGAACATATTCCAAATCAGACCATCTGATGTTTAAAATTTGACAGCATTAAGGTCAGAAACATAACTAAGTCAACATTACCTCTGTTAGAACTTGGAAGTACAAAAAGTCGAGAACCCACAAGCTGCTTAGAAATTTATCATTCCTGCTGGGGTTCAAAAGTTGCTAATAGTCACCAACTTGGATAATTAATTATGACCTGTTGCATTGGGTCTTAAAACGTTAGGTAACACTTGTATCAAACCCAATCTGACCCAATATTTTGATGGGTCAACCCATCTTGACCCAATCAGTTCAAGCTTTGGCGGGTTACATATTCTTGGGCTGATTTTTCCACTTCTGAAGTAGGTGAAGCTTCTTACAACAGAGACTGTTGATTTTAATGCAAATCTTTTTTGGGTGACATGCAGATGCTTGCTCGATTTGCCACTGGTGCTTCATTTAGTGCAGATTGCAGGGGTGGTGGAAAAGACAGTAATGCTCGATTTTTGCCTTTCATGATGCAAATGGCGCGTCACCTTCTTGATCATGATTCTTCTCAGCAGCATATCATGATTAAGTCTATCTCAACCTATTTAAGTTCTCCTGCATCAGAATCCAGAGCCTCCACTACCTCTGGAACTCAGACTTCCGCTGGTACAGAGGAGACTGTCCAGTTCATGATGGTTACCTCACTTCTTTCAGAATCCTATGAGTCGTGGCTGCAGAATCGCGCTTCCTTTTTACAACGAGGTATATACCATGCGTATATCCAGCGGACTCATGGTAGGCCTGTGCCTCGCTCGTCCCCCAATATGTCTGGGGCTTTGAAAACAGAGTCGGGAAGTACAAGTACATCTGCTTCTGAGGCTGGGGGATCAATTGAGTTATTCTCAACTATTCAACCAATGCTTGTCTACACTGGTTTGATAG</genome_strand>
        <mrna_strand>TTGGGCGTGCTGATGGAAGTCGGCTCCGGTTGTTAACTTACGACATTGTTTTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTTGCTCGATTTGCCACTGGTGCTTCATTTAGTGCAGATTGCAGGGGTGGTGGAAAAGACAGTAATGCTCGATTTTTGCCTTTCATGATGCAAATGGCGCGTCACCTTCTTGATCATGATTCTTCTCAGCAGCATATCATGATTAAGTCTATCTCAACCTATTTAAGTTCTTCTGCATCAGAATCCAGAGCCTCCACTACCTCTGGAACTCAGACTTCCGCTGGTACAGAGGAGACTGTCCAGTTCATGATGGTTACCTCACTTCTTTCAGAATCCTATGAGTCGTGGCTGCAGAATCGCGCTTCCTTTTTACAACGAGGTATATACCATGCGTATATCCAGCGGACTCATGGTAGGCCTGTGCCTCGCTCGTCCCCCAATATGTCTGGGGCTATGAAAACAGAGTCGGGAAGTACAAGTACATCTGCTTCTGAGGCTGGGGGATCAATTGAGTTATTCTCAACTATTCAACCAATGCTTGTCTACACTGGTTTGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E709315" ref_strand="+" ref_description="SGN-E709315 [FA51BF04]">
      <seq>tcttgatggttacctcacttctttcagaatcctatgagtcgtggctgccgaatcgcgcttcctttttacaacgaggcatataccatgcgtatatccagcggactcatggtaggcctgtgcctcgctcgccccccaatatgtctggggctttgaaaacagagtcgggaagtacaagcacatctgcttctgaggctgggggatcaattgagttattctcaactattcaaccaatgcttgcctacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="1761" stop="917"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1461" g_stop="1217" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E709315" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>245</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1461" e_stop="1217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGATGGTTACCTCACTTCTTTCAGAATCCTATGAGTCGTGGCTGCAGAATCGCGCTTCCTTTTTACAACGAGGTATATACCATGCGTATATCCAGCGGACTCATGGTAGGCCTGTGCCTCGCTCGTCCCCCAATATGTCTGGGGCTTTGAAAACAGAGTCGGGAAGTACAAGTACATCTGCTTCTGAGGCTGGGGGATCAATTGAGTTATTCTCAACTATTCAACCAATGCTTGTCTACACT</genome_strand>
        <mrna_strand>TCTTGATGGTTACCTCACTTCTTTCAGAATCCTATGAGTCGTGGCTGCCGAATCGCGCTTCCTTTTTACAACGAGGCATATACCATGCGTATATCCAGCGGACTCATGGTAGGCCTGTGCCTCGCTCGCCCCCCAATATGTCTGGGGCTTTGAAAACAGAGTCGGGAAGTACAAGCACATCTGCTTCTGAGGCTGGGGGATCAATTGAGTTATTCTCAACTATTCAACCAATGCTTGCCTACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E427015" ref_strand="+" ref_description="SGN-E427015 [STM-47-J19]">
      <seq>aagtaaacctaaaaaagaatgggatggagcagccctaagaaataatgagacactatgcaataatcttttcccactgagaggtccatcagtaccaataggccaatatatacgctatgttgaccaatactgggattacctgaatgctcttgggcgtgctgatgggagtcggctccggttgttaacttacgacattgttttgatgcttgctcgatttgccactggtgcttcatttagtgcagattgcaggggtggtggaaaagacagtaatgctcgatttttgcctttcatgatgcaaatggctcatcaccttcttgatcatgattcttctcagcagcatatcatgatcaagtctatctcaacctatttaagttctcctgcatcagaatccagagcctccactaccgttggaactcagacttctgctggtacagaggagactgtccaattcatgatggttacctcacttctttcagaatcctatgagtcgtggctgcagaatcgctcttcctttttacaacgaggtatataccatgcgtatatccagcggactcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="3416" stop="1054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3116" g_stop="2918" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2917" i_stop="1709" i_length="1209">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1708" g_stop="1354" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="554" r_length="355" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E427015" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E427015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3116" e_stop="2918"/>
          <exon e_start="1708" e_stop="1354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTAAACCTAAAAAAGAATGGGATGGAGCAGCCCTTAGAAATAACGAGACACTATGCAATAATCTTTTCCCTCTGAGAGGTCCATCAGTACCAATAGGGCAATATATACGCTACGTTGACCAATACTGGGATTACCTGAATGCTCTTGGGCGTGCTGATGGAAGTCGGCTCCGGTTGTTAACTTACGACATTGTTTTGGTGAGTTTCTATCTTTGTTATTCCTTTCTATCATGTTTTCATCTCTCCACTCCTGATCTTCTCTTTTTATCTCTATCCCTCTTTTTTCTTTATCTTTTTCTTTTTTAAGAAGGTAACATATTTGTGTATTCCTTTACACCAAAAATCAAACAGCGCTAAGCACATCTTCTGGAATAGTTGGCTTTATCTTGAAAACATCTTTGGTTTCTCTCTTCTCGAACTGTCCCCAAATGCAAACTGGAATATTCTTCCATCTCATTTTGTGAATTGCATTACTGCCTTCTCTGTTCCAGCCTCTTTTATTTTAATCCCTCCCTTTCCGTGTGGTTGGGGTCGAGGAGGGAGGAACGGTTTTGTTGGACGATGAGGTAGGTTAGGGGTGTTAAATGGGAGGGTTGGGTTAATTTGATTCCGAAGGTCTGCATACACTCTACCCTCCCCAAATCCCACTTTATGGGATTTCACTGGGTATGTTGTTATTGTTGATTTTGTGTGATTCCTATTTTGTTGATTGAGAAGGTTAAATTGGTTCAATAAAGTACGAAAAAGTTCTTGCACTTTTTGAGATTATAATTTTGTTCATATCATTCTTGAAAGAAGATCTGAAAACTTGGTCAAAAATGTGTTTCATTTTCTCTAAATGGCAAATGGACTTCCCTCCGGATGGAAAAATGAGACCTCTGTTTTGCTTTCTAAATCCTTTTCCAATTTATTCAACTTTAATTATAATCAATTTATTCTACTTTTTCCCATCGTGATTTGATAGAGTAGAATATTCGCAGAAAGGTAAGAATATGTGTTGAACATATTCCAAATCAGACCATCTGATGTTTAAAATTTGACAGCATTAAGGTCAGAAACATAACTAAGTCAACATTACCTCTGTTAGAACTTGGAAGTACAAAAAGTCGAGAACCCACAAGCTGCTTAGAAATTTATCATTCCTGCTGGGGTTCAAAAGTTGCTAATAGTCACCAACTTGGATAATTAATTATGACCTGTTGCATTGGGTCTTAAAACGTTAGGTAACACTTGTATCAAACCCAATCTGACCCAATATTTTGATGGGTCAACCCATCTTGACCCAATCAGTTCAAGCTTTGGCGGGTTACATATTCTTGGGCTGATTTTTCCACTTCTGAAGTAGGTGAAGCTTCTTACAACAGAGACTGTTGATTTTAATGCAAATCTTTTTTGGGTGACATGCAGATGCTTGCTCGATTTGCCACTGGTGCTTCATTTAGTGCAGATTGCAGGGGTGGTGGAAAAGACAGTAATGCTCGATTTTTGCCTTTCATGATGCAAATGGCGCGTCACCTTCTTGATCATGATTCTTCTCAGCAGCATATCATGATTAAGTCTATCTCAACCTATTTAAGTTCTCCTGCATCAGAATCCAGAGCCTCCACTACCTCTGGAACTCAGACTTCCGCTGGTACAGAGGAGACTGTCCAGTTCATGATGGTTACCTCACTTCTTTCAGAATCCTATGAGTCGTGGCTGCAGAATCGCGCTTCCTTTTTACAACGAGGTATATACCATGCGTATATCCAGCGGACTCATG</genome_strand>
        <mrna_strand>AAGTAAACCTAAAAAAGAATGGGATGGAGCAGCCCTAAGAAATAATGAGACACTATGCAATAATCTTTTCCCACTGAGAGGTCCATCAGTACCAATAGGCCAATATATACGCTATGTTGACCAATACTGGGATTACCTGAATGCTCTTGGGCGTGCTGATGGGAGTCGGCTCCGGTTGTTAACTTACGACATTGTTTTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTTGCTCGATTTGCCACTGGTGCTTCATTTAGTGCAGATTGCAGGGGTGGTGGAAAAGACAGTAATGCTCGATTTTTGCCTTTCATGATGCAAATGGCTCATCACCTTCTTGATCATGATTCTTCTCAGCAGCATATCATGATCAAGTCTATCTCAACCTATTTAAGTTCTCCTGCATCAGAATCCAGAGCCTCCACTACCGTTGGAACTCAGACTTCTGCTGGTACAGAGGAGACTGTCCAATTCATGATGGTTACCTCACTTCTTTCAGAATCCTATGAGTCGTGGCTGCAGAATCGCTCTTCCTTTTTACAACGAGGTATATACCATGCGTATATCCAGCGGACTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E706168" ref_strand="+" ref_description="SGN-E706168 [FA29AH02]">
      <seq>gttgttgctcgacctatcttggaaggtttggaagatgttgaggatgaggaagaggaaggcttggcttgcatggtttgtcgtgaaggctaccgcttgcgccctacagacttgcttggtgtttacacttatagtaaacgggttaatcttggtgttggaagccctggaaatgctcgtggggactgtgtttacacaacggtcagccatttcaacatcatacattttcagtgccatcaggaggctaaacgagcagatgcggccttaagtaaacctaaaaaagaatgggatggagcagcccttagaaataacgagacactatgcaataatcttttccctctgagaggtccatcagtaccaatagggcaatatatacgctacgttgaccaatactgggattacctgaatgctcttgggcgtgctgatggaagtcggctccggttgttaacttacgacattgttttgatgcttgctcgatttgccactggtgcttcatttagtgcagattgcaggggtggtggaaaagacagtaatgctcgatttttgcctttcatgatgcaaatggcgcgtcaccttcttgatcatgattcttctcagcagcatatcatgattaagtctatctcaacctatttaagttctcctgcatcagaatccagagcctccactacctctggaactcagacttccgctggtacagaggagactgtccagttcatgatggttacctcacttctttcagaatcctatgagtcgtggctgcagaatcgcgcttcctttttacaacgaggtatataccatgcgtatatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="3676" stop="1067"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3376" g_stop="2918" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="459" r_length="459" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2917" i_stop="1709" i_length="1209">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1708" g_stop="1367" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="801" r_length="342" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E706168" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3376" e_stop="2918"/>
          <exon e_start="1708" e_stop="1367"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTTGCTCGACCTATCTTGGAAGGTTTGGAAGATGTTGAGGATGAGGAAGAGGAAGGCTTGGCTTGCATGGTTTGTCGTGAAGGCTACCGCTTGCGCCCTACAGACTTGCTTGGTGTTTACACTTATAGTAAACGGGTTAATCTTGGTGTTGGAAGCCCTGGAAATGCTCGTGGGGACTGTGTTTACACAACGGTCAGCCATTTCAACATCATACATTTTCAGTGCCATCAGGAGGCTAAACGAGCAGATGCGGCCTTAAGTAAACCTAAAAAAGAATGGGATGGAGCAGCCCTTAGAAATAACGAGACACTATGCAATAATCTTTTCCCTCTGAGAGGTCCATCAGTACCAATAGGGCAATATATACGCTACGTTGACCAATACTGGGATTACCTGAATGCTCTTGGGCGTGCTGATGGAAGTCGGCTCCGGTTGTTAACTTACGACATTGTTTTGGTGAGTTTCTATCTTTGTTATTCCTTTCTATCATGTTTTCATCTCTCCACTCCTGATCTTCTCTTTTTATCTCTATCCCTCTTTTTTCTTTATCTTTTTCTTTTTTAAGAAGGTAACATATTTGTGTATTCCTTTACACCAAAAATCAAACAGCGCTAAGCACATCTTCTGGAATAGTTGGCTTTATCTTGAAAACATCTTTGGTTTCTCTCTTCTCGAACTGTCCCCAAATGCAAACTGGAATATTCTTCCATCTCATTTTGTGAATTGCATTACTGCCTTCTCTGTTCCAGCCTCTTTTATTTTAATCCCTCCCTTTCCGTGTGGTTGGGGTCGAGGAGGGAGGAACGGTTTTGTTGGACGATGAGGTAGGTTAGGGGTGTTAAATGGGAGGGTTGGGTTAATTTGATTCCGAAGGTCTGCATACACTCTACCCTCCCCAAATCCCACTTTATGGGATTTCACTGGGTATGTTGTTATTGTTGATTTTGTGTGATTCCTATTTTGTTGATTGAGAAGGTTAAATTGGTTCAATAAAGTACGAAAAAGTTCTTGCACTTTTTGAGATTATAATTTTGTTCATATCATTCTTGAAAGAAGATCTGAAAACTTGGTCAAAAATGTGTTTCATTTTCTCTAAATGGCAAATGGACTTCCCTCCGGATGGAAAAATGAGACCTCTGTTTTGCTTTCTAAATCCTTTTCCAATTTATTCAACTTTAATTATAATCAATTTATTCTACTTTTTCCCATCGTGATTTGATAGAGTAGAATATTCGCAGAAAGGTAAGAATATGTGTTGAACATATTCCAAATCAGACCATCTGATGTTTAAAATTTGACAGCATTAAGGTCAGAAACATAACTAAGTCAACATTACCTCTGTTAGAACTTGGAAGTACAAAAAGTCGAGAACCCACAAGCTGCTTAGAAATTTATCATTCCTGCTGGGGTTCAAAAGTTGCTAATAGTCACCAACTTGGATAATTAATTATGACCTGTTGCATTGGGTCTTAAAACGTTAGGTAACACTTGTATCAAACCCAATCTGACCCAATATTTTGATGGGTCAACCCATCTTGACCCAATCAGTTCAAGCTTTGGCGGGTTACATATTCTTGGGCTGATTTTTCCACTTCTGAAGTAGGTGAAGCTTCTTACAACAGAGACTGTTGATTTTAATGCAAATCTTTTTTGGGTGACATGCAGATGCTTGCTCGATTTGCCACTGGTGCTTCATTTAGTGCAGATTGCAGGGGTGGTGGAAAAGACAGTAATGCTCGATTTTTGCCTTTCATGATGCAAATGGCGCGTCACCTTCTTGATCATGATTCTTCTCAGCAGCATATCATGATTAAGTCTATCTCAACCTATTTAAGTTCTCCTGCATCAGAATCCAGAGCCTCCACTACCTCTGGAACTCAGACTTCCGCTGGTACAGAGGAGACTGTCCAGTTCATGATGGTTACCTCACTTCTTTCAGAATCCTATGAGTCGTGGCTGCAGAATCGCGCTTCCTTTTTACAACGAGGTATATACCATGCGTATATC</genome_strand>
        <mrna_strand>GTTGTTGCTCGACCTATCTTGGAAGGTTTGGAAGATGTTGAGGATGAGGAAGAGGAAGGCTTGGCTTGCATGGTTTGTCGTGAAGGCTACCGCTTGCGCCCTACAGACTTGCTTGGTGTTTACACTTATAGTAAACGGGTTAATCTTGGTGTTGGAAGCCCTGGAAATGCTCGTGGGGACTGTGTTTACACAACGGTCAGCCATTTCAACATCATACATTTTCAGTGCCATCAGGAGGCTAAACGAGCAGATGCGGCCTTAAGTAAACCTAAAAAAGAATGGGATGGAGCAGCCCTTAGAAATAACGAGACACTATGCAATAATCTTTTCCCTCTGAGAGGTCCATCAGTACCAATAGGGCAATATATACGCTACGTTGACCAATACTGGGATTACCTGAATGCTCTTGGGCGTGCTGATGGAAGTCGGCTCCGGTTGTTAACTTACGACATTGTTTTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTTGCTCGATTTGCCACTGGTGCTTCATTTAGTGCAGATTGCAGGGGTGGTGGAAAAGACAGTAATGCTCGATTTTTGCCTTTCATGATGCAAATGGCGCGTCACCTTCTTGATCATGATTCTTCTCAGCAGCATATCATGATTAAGTCTATCTCAACCTATTTAAGTTCTCCTGCATCAGAATCCAGAGCCTCCACTACCTCTGGAACTCAGACTTCCGCTGGTACAGAGGAGACTGTCCAGTTCATGATGGTTACCTCACTTCTTTCAGAATCCTATGAGTCGTGGCTGCAGAATCGCGCTTCCTTTTTACAACGAGGTATATACCATGCGTATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E484760" ref_strand="+" ref_description="SGN-E484760 [cSTE-14-N12]">
      <seq>aagtaaacctaaaaaagaatgggatggagcagccctaagaaataacgagacactatgcaataatcttttcccactgagaggtccatcagtaccaataggccaatatatacgctatgttgaccaatactgggattacctgaatgctcttgggcgtgctgatgggagtcggctccggttgttaacttacgacattgttttgatgcttgctcgatttgccactggtgcttcatttagtgcagattgcaggggtggtggaaaagacagtaatgctcgatttttgcctttcatgatgcaaatggctcatcaccttcttgatcatgattcttctcagcagcatatcatgatcaagtctatctcaacctatttaagttctcctgcatcagaatccagagcctccactaccgttggaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="3416" stop="1195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3116" g_stop="2918" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2917" i_stop="1709" i_length="1209">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1708" g_stop="1495" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="413" r_length="214" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E484760" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E484760" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3116" e_stop="2918"/>
          <exon e_start="1708" e_stop="1495"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTAAACCTAAAAAAGAATGGGATGGAGCAGCCCTTAGAAATAACGAGACACTATGCAATAATCTTTTCCCTCTGAGAGGTCCATCAGTACCAATAGGGCAATATATACGCTACGTTGACCAATACTGGGATTACCTGAATGCTCTTGGGCGTGCTGATGGAAGTCGGCTCCGGTTGTTAACTTACGACATTGTTTTGGTGAGTTTCTATCTTTGTTATTCCTTTCTATCATGTTTTCATCTCTCCACTCCTGATCTTCTCTTTTTATCTCTATCCCTCTTTTTTCTTTATCTTTTTCTTTTTTAAGAAGGTAACATATTTGTGTATTCCTTTACACCAAAAATCAAACAGCGCTAAGCACATCTTCTGGAATAGTTGGCTTTATCTTGAAAACATCTTTGGTTTCTCTCTTCTCGAACTGTCCCCAAATGCAAACTGGAATATTCTTCCATCTCATTTTGTGAATTGCATTACTGCCTTCTCTGTTCCAGCCTCTTTTATTTTAATCCCTCCCTTTCCGTGTGGTTGGGGTCGAGGAGGGAGGAACGGTTTTGTTGGACGATGAGGTAGGTTAGGGGTGTTAAATGGGAGGGTTGGGTTAATTTGATTCCGAAGGTCTGCATACACTCTACCCTCCCCAAATCCCACTTTATGGGATTTCACTGGGTATGTTGTTATTGTTGATTTTGTGTGATTCCTATTTTGTTGATTGAGAAGGTTAAATTGGTTCAATAAAGTACGAAAAAGTTCTTGCACTTTTTGAGATTATAATTTTGTTCATATCATTCTTGAAAGAAGATCTGAAAACTTGGTCAAAAATGTGTTTCATTTTCTCTAAATGGCAAATGGACTTCCCTCCGGATGGAAAAATGAGACCTCTGTTTTGCTTTCTAAATCCTTTTCCAATTTATTCAACTTTAATTATAATCAATTTATTCTACTTTTTCCCATCGTGATTTGATAGAGTAGAATATTCGCAGAAAGGTAAGAATATGTGTTGAACATATTCCAAATCAGACCATCTGATGTTTAAAATTTGACAGCATTAAGGTCAGAAACATAACTAAGTCAACATTACCTCTGTTAGAACTTGGAAGTACAAAAAGTCGAGAACCCACAAGCTGCTTAGAAATTTATCATTCCTGCTGGGGTTCAAAAGTTGCTAATAGTCACCAACTTGGATAATTAATTATGACCTGTTGCATTGGGTCTTAAAACGTTAGGTAACACTTGTATCAAACCCAATCTGACCCAATATTTTGATGGGTCAACCCATCTTGACCCAATCAGTTCAAGCTTTGGCGGGTTACATATTCTTGGGCTGATTTTTCCACTTCTGAAGTAGGTGAAGCTTCTTACAACAGAGACTGTTGATTTTAATGCAAATCTTTTTTGGGTGACATGCAGATGCTTGCTCGATTTGCCACTGGTGCTTCATTTAGTGCAGATTGCAGGGGTGGTGGAAAAGACAGTAATGCTCGATTTTTGCCTTTCATGATGCAAATGGCGCGTCACCTTCTTGATCATGATTCTTCTCAGCAGCATATCATGATTAAGTCTATCTCAACCTATTTAAGTTCTCCTGCATCAGAATCCAGAGCCTCCACTACCTCTGGAACTC</genome_strand>
        <mrna_strand>AAGTAAACCTAAAAAAGAATGGGATGGAGCAGCCCTAAGAAATAACGAGACACTATGCAATAATCTTTTCCCACTGAGAGGTCCATCAGTACCAATAGGCCAATATATACGCTATGTTGACCAATACTGGGATTACCTGAATGCTCTTGGGCGTGCTGATGGGAGTCGGCTCCGGTTGTTAACTTACGACATTGTTTTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTTGCTCGATTTGCCACTGGTGCTTCATTTAGTGCAGATTGCAGGGGTGGTGGAAAAGACAGTAATGCTCGATTTTTGCCTTTCATGATGCAAATGGCTCATCACCTTCTTGATCATGATTCTTCTCAGCAGCATATCATGATCAAGTCTATCTCAACCTATTTAAGTTCTCCTGCATCAGAATCCAGAGCCTCCACTACCGTTGGAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E483289" ref_strand="+" ref_description="SGN-E483289 [cSTE-8-D12]">
      <seq>ctgcaatcagccatctgaaagaaaactttgctttcactggacaggttggtttcaaatcaactgtggagtgggcctcgggtttaaagcttccatctattcctcttattttatccatgctgaggggcttgtcaatgggccatttggcaactcaagagtgcatagatgaaggaggaatcttgccattgcttcatgctttagagggtgtcgccggtgaaaatgagattggagccagggctgaaaacttgttggacacgctgtctgacaaggagggaaaaggtgatgggttcttagctcagaaagttcaccaactacgtcatgcgacaaaggatgagatgaggcgacgagcattgaggaagagagcagaattactgcagggacttggtatgcaccaagaactgtcctcagatggtggtgaacgtattgttgttgctcaacctgtcttggaaggtttggaagatgttgaggatgaagaagaggaaggcttggcttgcatggtttgtcgtgaaggctaccgcttgcgccctacagacttgcttggtgtttacacttatagtaaacgggttaatctttggtgttggaagccctggaaatgctcgtggggactgtgtctacacaacggtcagccatttcaacatcatacattttcagtgccatcangaggctaaacgagcagatgcggccttaagtaaacctaaaaaagaatgggatggagcagccctaagaaataacgagacactatgcaataatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="4824" stop="2752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4524" g_stop="4151" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="374" r_length="374" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4150" i_stop="3425" i_length="726">
            <donor d_prob="0.941" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3424" g_stop="3052" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="748" r_length="374" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E483289" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E483289" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4524" e_stop="4151"/>
          <exon e_start="3424" e_stop="3052"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCAATCAGCCATCTAAAAGAAACCTTTGCTTTCACTGGACAGGTTGGTTTCAAATCAACTGTGGAGTGGACCTCGGGTTTAAAGCTTCCATCTATTCCTCTTATTTTATCCATGCTGAGGGGTTTGTCGATGGGCCATTTAGCAACTCAAAAGTGCATAGATGAAGGAGGAATCTTGCCATTGCTTCATGCTTTAGAGGGTGTCGCTGGTGAGAATGAGATTGGAGCCAGGGCTGAAAACTTGTTGGACACACTGTCTGACAAAGAGGGAAAAGGTGATGGGTTCTTAGCTCAGAAAGTTCACCAACTACGTCATGCGACAAAGGATGAGATGAGGAGACGAGCATTGAGGAAGAGAGCAGAATTACTGCAGGTTCCTTGCCATCTCACTTTACTCTTAACTCCTACTTTACTATTCTTAATGTCCTTTGCGTCTTTATTTTTGTGTTGGCTTGACTTAACACTACTGATGTGTTGCGTAGTAATGAATGATTAAATACCACTTGTCCTCATCTGAAGCATATTTTATGGTCAAATCTTCCCAGCAAAATTGCACATCATAGCCTCCTGTTTGGTAACAAAGCATTTCCAGAACTAGAGATCCTTAGGTGACGAGTAGACATAACATGAGGCATGAGCATTACTTTAAGAATATTTCTTAAGTAATTGAAACATTTTGCTAAATATAATTTAAAATTGGAAGTTAGAAGTGTCTGTCTTGAATGTAAGAACTGATATTGAGACGCTGTGGAATTGTACAGAAGCTTATCAACAGTATCTATCTCTTAGGAAGATGATTGATACTGAAGCTAGAATTTTTTCAATGTAGGTCAGTGGTTACTTCATATTGTTATATGTAGATGCTAAAGTAGAATAGTTTTCTGTCAAGCATCTAATCATTCTCTGGCAAGAATATCTTTTTATCTAGTGACACAATATGTTTCTTCCCTTCCAATTGTTCCTTGTGATTTATTTAATGAAGCTTCTTAGATGTCTTTTAGATGCAACATTTAATATCTAACAACTGAGGTTATAAATGTTGTTTCGGTTGGGCCCAATATCGTAACTAAGGAGATTCATCTCATTTTTATGGTACCAGGGACTTGGTATGCACCAAGAACTGTCCTCAGATGGTGGTGAACGTATTGTTGTTGCTCGACCTATCTTGGAAGGTTTGGAAGATGTTGAGGATGAGGAAGAGGAAGGCTTGGCTTGCATGGTTTGTCGTGAAGGCTACCGCTTGCGCCCTACAGACTTGCTTGGTGTTTACACTTATAGTAAACGGGTTAATC-TTGGTGTTGGAAGCCCTGGAAATGCTCGTGGGGACTGTGTTTACACAACGGTCAGCCATTTCAACATCATACATTTTCAGTGCCATCAGGAGGCTAAACGAGCAGATGCGGCCTTAAGTAAACCTAAAAAAGAATGGGATGGAGCAGCCCTTAGAAATAACGAGACACTATGCAATAATC</genome_strand>
        <mrna_strand>CTGCAATCAGCCATCTGAAAGAAAACTTTGCTTTCACTGGACAGGTTGGTTTCAAATCAACTGTGGAGTGGGCCTCGGGTTTAAAGCTTCCATCTATTCCTCTTATTTTATCCATGCTGAGGGGCTTGTCAATGGGCCATTTGGCAACTCAAGAGTGCATAGATGAAGGAGGAATCTTGCCATTGCTTCATGCTTTAGAGGGTGTCGCCGGTGAAAATGAGATTGGAGCCAGGGCTGAAAACTTGTTGGACACGCTGTCTGACAAGGAGGGAAAAGGTGATGGGTTCTTAGCTCAGAAAGTTCACCAACTACGTCATGCGACAAAGGATGAGATGAGGCGACGAGCATTGAGGAAGAGAGCAGAATTACTGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACTTGGTATGCACCAAGAACTGTCCTCAGATGGTGGTGAACGTATTGTTGTTGCTCAACCTGTCTTGGAAGGTTTGGAAGATGTTGAGGATGAAGAAGAGGAAGGCTTGGCTTGCATGGTTTGTCGTGAAGGCTACCGCTTGCGCCCTACAGACTTGCTTGGTGTTTACACTTATAGTAAACGGGTTAATCTTTGGTGTTGGAAGCCCTGGAAATGCTCGTGGGGACTGTGTCTACACAACGGTCAGCCATTTCAACATCATACATTTTCAGTGCCATCANGAGGCTAAACGAGCAGATGCGGCCTTAAGTAAACCTAAAAAAGAATGGGATGGAGCAGCCCTAAGAAATAACGAGACACTATGCAATAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E701479" ref_strand="+" ref_description="SGN-E701479 [FA16AD05]">
      <seq>gattgtcccatccatctggacttagaaagtcaaataagcagcagaggaacactgagatggtcgcaagaatattgccttacttgacgtacggggaacctgcagcaatggaagctcttgtacagcattttgaaccttgtttacagaattggcgcgaatttgataggctgcaaaaactttacgaagacaatatgaatgatgaaacaattgcgcagcaagcttcaaagcaaaaatacaccctagagaattttgttagggtttcagaatccctcaagacaagttcttgtggagagaggttgaaagatattatactggaaaaagggattactggggctgcaatcagccatctaaaagaaacctttgctttcactggacaggttggtttcaaatcaactgtggagtggacctcgggtttaaagcttccatctattcctcttattttatccatgctgaggggtttgtcgatgggccatttagcaactcaaaagtgcatagatgaaggaggaatcttgccattgcttcatgctttagagggtgtcgctggtgagaatgagattggagccagggctgaaaacttgttggacacactgtctgacaaagagggaaaaggtgatgggttcttagctcagaaagttcaccaactacgtcatgcgacaaaggatgagatgaggagacgagcattgaggaagagagcagaattactgcagggacttggtatgcaccaagaactgtcctcagatggtggtgaacgtattgttgttgctcgacctatcttggaaggtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="5154" stop="3047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4854" g_stop="4151" g_length="704"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="704" r_length="704" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4150" i_stop="3425" i_length="726">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3424" g_stop="3347" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="705" r_stop="782" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E701479" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>782</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701479" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4854" e_stop="4151"/>
          <exon e_start="3424" e_stop="3347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTGTCCCATCCATCTGGACTTAGAAAGTCAAATAAGCAGCAGAGGAACACTGAGATGGTCGCAAGAATATTGCCTTACTTGACGTACGGGGAACCTGCAGCAATGGAAGCTCTTGTACAGCATTTTGAACCTTGTTTACAGAATTGGCGCGAATTTGATAGGCTGCAAAAACTTTACGAAGACAATATGAATGATGAAACAATTGCGCAGCAAGCTTCAAAGCAAAAATACACCCTAGAGAATTTTGTTAGGGTTTCAGAATCCCTCAAGACAAGTTCTTGTGGAGAGAGGTTGAAAGATATTATACTGGAAAAAGGGATTACTGGGGCTGCAATCAGCCATCTAAAAGAAACCTTTGCTTTCACTGGACAGGTTGGTTTCAAATCAACTGTGGAGTGGACCTCGGGTTTAAAGCTTCCATCTATTCCTCTTATTTTATCCATGCTGAGGGGTTTGTCGATGGGCCATTTAGCAACTCAAAAGTGCATAGATGAAGGAGGAATCTTGCCATTGCTTCATGCTTTAGAGGGTGTCGCTGGTGAGAATGAGATTGGAGCCAGGGCTGAAAACTTGTTGGACACACTGTCTGACAAAGAGGGAAAAGGTGATGGGTTCTTAGCTCAGAAAGTTCACCAACTACGTCATGCGACAAAGGATGAGATGAGGAGACGAGCATTGAGGAAGAGAGCAGAATTACTGCAGGTTCCTTGCCATCTCACTTTACTCTTAACTCCTACTTTACTATTCTTAATGTCCTTTGCGTCTTTATTTTTGTGTTGGCTTGACTTAACACTACTGATGTGTTGCGTAGTAATGAATGATTAAATACCACTTGTCCTCATCTGAAGCATATTTTATGGTCAAATCTTCCCAGCAAAATTGCACATCATAGCCTCCTGTTTGGTAACAAAGCATTTCCAGAACTAGAGATCCTTAGGTGACGAGTAGACATAACATGAGGCATGAGCATTACTTTAAGAATATTTCTTAAGTAATTGAAACATTTTGCTAAATATAATTTAAAATTGGAAGTTAGAAGTGTCTGTCTTGAATGTAAGAACTGATATTGAGACGCTGTGGAATTGTACAGAAGCTTATCAACAGTATCTATCTCTTAGGAAGATGATTGATACTGAAGCTAGAATTTTTTCAATGTAGGTCAGTGGTTACTTCATATTGTTATATGTAGATGCTAAAGTAGAATAGTTTTCTGTCAAGCATCTAATCATTCTCTGGCAAGAATATCTTTTTATCTAGTGACACAATATGTTTCTTCCCTTCCAATTGTTCCTTGTGATTTATTTAATGAAGCTTCTTAGATGTCTTTTAGATGCAACATTTAATATCTAACAACTGAGGTTATAAATGTTGTTTCGGTTGGGCCCAATATCGTAACTAAGGAGATTCATCTCATTTTTATGGTACCAGGGACTTGGTATGCACCAAGAACTGTCCTCAGATGGTGGTGAACGTATTGTTGTTGCTCGACCTATCTTGGAAGGTTTG</genome_strand>
        <mrna_strand>GATTGTCCCATCCATCTGGACTTAGAAAGTCAAATAAGCAGCAGAGGAACACTGAGATGGTCGCAAGAATATTGCCTTACTTGACGTACGGGGAACCTGCAGCAATGGAAGCTCTTGTACAGCATTTTGAACCTTGTTTACAGAATTGGCGCGAATTTGATAGGCTGCAAAAACTTTACGAAGACAATATGAATGATGAAACAATTGCGCAGCAAGCTTCAAAGCAAAAATACACCCTAGAGAATTTTGTTAGGGTTTCAGAATCCCTCAAGACAAGTTCTTGTGGAGAGAGGTTGAAAGATATTATACTGGAAAAAGGGATTACTGGGGCTGCAATCAGCCATCTAAAAGAAACCTTTGCTTTCACTGGACAGGTTGGTTTCAAATCAACTGTGGAGTGGACCTCGGGTTTAAAGCTTCCATCTATTCCTCTTATTTTATCCATGCTGAGGGGTTTGTCGATGGGCCATTTAGCAACTCAAAAGTGCATAGATGAAGGAGGAATCTTGCCATTGCTTCATGCTTTAGAGGGTGTCGCTGGTGAGAATGAGATTGGAGCCAGGGCTGAAAACTTGTTGGACACACTGTCTGACAAAGAGGGAAAAGGTGATGGGTTCTTAGCTCAGAAAGTTCACCAACTACGTCATGCGACAAAGGATGAGATGAGGAGACGAGCATTGAGGAAGAGAGCAGAATTACTGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACTTGGTATGCACCAAGAACTGTCCTCAGATGGTGGTGAACGTATTGTTGTTGCTCGACCTATCTTGGAAGGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E426644" ref_strand="+" ref_description="SGN-E426644 [STM-46-N14]">
      <seq>ctgcaatcagccatctgaaagaaaactttgctttcactggacaggttggtttcaaatcaactgtggagtgggcctcgggtttaaagcttccatctattcctcttattttatccatgctgaggggcttgtcaatgggccatttggcaactcaagagtgcatagatgaaggaggaatcttgccattgcttcatgctttagagggtgtcgccggtgaaaatgagattggagccagggctgaaaacttgttggacacgctgtctgacaaggagggaaaaggtgatgggttcttagctcagaaagttcaccaactacgtcatgcgacaaaggatgagatgaggcgacgagcattgaggaagagagcagaattactgcagggacttggtatgcaccaagaactgtcctcagatggtggtgaacgtattgntgttgctcaacctgtcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="4824" stop="3056"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4524" g_stop="4151" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="374" r_length="374" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4150" i_stop="3425" i_length="726">
            <donor d_prob="0.941" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3424" g_stop="3356" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="443" r_length="69" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E426644" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E426644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4524" e_stop="4151"/>
          <exon e_start="3424" e_stop="3356"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCAATCAGCCATCTAAAAGAAACCTTTGCTTTCACTGGACAGGTTGGTTTCAAATCAACTGTGGAGTGGACCTCGGGTTTAAAGCTTCCATCTATTCCTCTTATTTTATCCATGCTGAGGGGTTTGTCGATGGGCCATTTAGCAACTCAAAAGTGCATAGATGAAGGAGGAATCTTGCCATTGCTTCATGCTTTAGAGGGTGTCGCTGGTGAGAATGAGATTGGAGCCAGGGCTGAAAACTTGTTGGACACACTGTCTGACAAAGAGGGAAAAGGTGATGGGTTCTTAGCTCAGAAAGTTCACCAACTACGTCATGCGACAAAGGATGAGATGAGGAGACGAGCATTGAGGAAGAGAGCAGAATTACTGCAGGTTCCTTGCCATCTCACTTTACTCTTAACTCCTACTTTACTATTCTTAATGTCCTTTGCGTCTTTATTTTTGTGTTGGCTTGACTTAACACTACTGATGTGTTGCGTAGTAATGAATGATTAAATACCACTTGTCCTCATCTGAAGCATATTTTATGGTCAAATCTTCCCAGCAAAATTGCACATCATAGCCTCCTGTTTGGTAACAAAGCATTTCCAGAACTAGAGATCCTTAGGTGACGAGTAGACATAACATGAGGCATGAGCATTACTTTAAGAATATTTCTTAAGTAATTGAAACATTTTGCTAAATATAATTTAAAATTGGAAGTTAGAAGTGTCTGTCTTGAATGTAAGAACTGATATTGAGACGCTGTGGAATTGTACAGAAGCTTATCAACAGTATCTATCTCTTAGGAAGATGATTGATACTGAAGCTAGAATTTTTTCAATGTAGGTCAGTGGTTACTTCATATTGTTATATGTAGATGCTAAAGTAGAATAGTTTTCTGTCAAGCATCTAATCATTCTCTGGCAAGAATATCTTTTTATCTAGTGACACAATATGTTTCTTCCCTTCCAATTGTTCCTTGTGATTTATTTAATGAAGCTTCTTAGATGTCTTTTAGATGCAACATTTAATATCTAACAACTGAGGTTATAAATGTTGTTTCGGTTGGGCCCAATATCGTAACTAAGGAGATTCATCTCATTTTTATGGTACCAGGGACTTGGTATGCACCAAGAACTGTCCTCAGATGGTGGTGAACGTATTGTTGTTGCTCGACCTATCTTG</genome_strand>
        <mrna_strand>CTGCAATCAGCCATCTGAAAGAAAACTTTGCTTTCACTGGACAGGTTGGTTTCAAATCAACTGTGGAGTGGGCCTCGGGTTTAAAGCTTCCATCTATTCCTCTTATTTTATCCATGCTGAGGGGCTTGTCAATGGGCCATTTGGCAACTCAAGAGTGCATAGATGAAGGAGGAATCTTGCCATTGCTTCATGCTTTAGAGGGTGTCGCCGGTGAAAATGAGATTGGAGCCAGGGCTGAAAACTTGTTGGACACGCTGTCTGACAAGGAGGGAAAAGGTGATGGGTTCTTAGCTCAGAAAGTTCACCAACTACGTCATGCGACAAAGGATGAGATGAGGCGACGAGCATTGAGGAAGAGAGCAGAATTACTGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACTTGGTATGCACCAAGAACTGTCCTCAGATGGTGGTGAACGTATTGNTGTTGCTCAACCTGTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E366845" ref_strand="+" ref_description="SGN-E366845 [cLPT-6-B15]">
      <seq>tggaaccagctgagggtattcttttgattgtggagagcttaacactagaagcaaatgagagtgataacatcagcattacttctgatgtagatgtagtctccagtgatgaagcaggtgctggtgaacaggcaaagaaaattgtactacttttccttgaaagattgtcccatccatctggacttagaaagtcaaataagcagcagaggaacactgagatggtcgctagaatattgccttacttgacgtacggggaacctgcagcaatggaagctcttgtacagcattttgaaccttgtttacagaattggcgcgaatttgataggctgcaaaaacattacgaagaaaatatgaaagatgaaacaattgcgcagcaagcttcaaagcaaaaatacaccctagagaattttgttagggtttcagaatccctcaagacaagttcttgtggagagaggttgaaagatattatactggaaaaagggattactggggctgcaatcagccatctaaaagaaagctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="5313" stop="4197"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5013" g_stop="4497" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="517" r_length="517" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E366845" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5013" e_stop="4497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAACCAGCTGAGGGTATTCTTTTGATTGTGGAGAGCTTAACACTAGAAGCAAATGAGAGTGATAACATCAGCATTACTTCTGATGTAGATGTAGTCTCCAGTGATGAAGCAGGTGCTGGTGAACAGGCAAAGAAAATTGTACTACTTTTCCTTGAAAGATTGTCCCATCCATCTGGACTTAGAAAGTCAAATAAGCAGCAGAGGAACACTGAGATGGTCGCAAGAATATTGCCTTACTTGACGTACGGGGAACCTGCAGCAATGGAAGCTCTTGTACAGCATTTTGAACCTTGTTTACAGAATTGGCGCGAATTTGATAGGCTGCAAAAACTTTACGAAGACAATATGAATGATGAAACAATTGCGCAGCAAGCTTCAAAGCAAAAATACACCCTAGAGAATTTTGTTAGGGTTTCAGAATCCCTCAAGACAAGTTCTTGTGGAGAGAGGTTGAAAGATATTATACTGGAAAAAGGGATTACTGGGGCTGCAATCAGCCATCTAAAAGAAACCTT</genome_strand>
        <mrna_strand>TGGAACCAGCTGAGGGTATTCTTTTGATTGTGGAGAGCTTAACACTAGAAGCAAATGAGAGTGATAACATCAGCATTACTTCTGATGTAGATGTAGTCTCCAGTGATGAAGCAGGTGCTGGTGAACAGGCAAAGAAAATTGTACTACTTTTCCTTGAAAGATTGTCCCATCCATCTGGACTTAGAAAGTCAAATAAGCAGCAGAGGAACACTGAGATGGTCGCTAGAATATTGCCTTACTTGACGTACGGGGAACCTGCAGCAATGGAAGCTCTTGTACAGCATTTTGAACCTTGTTTACAGAATTGGCGCGAATTTGATAGGCTGCAAAAACATTACGAAGAAAATATGAAAGATGAAACAATTGCGCAGCAAGCTTCAAAGCAAAAATACACCCTAGAGAATTTTGTTAGGGTTTCAGAATCCCTCAAGACAAGTTCTTGTGGAGAGAGGTTGAAAGATATTATACTGGAAAAAGGGATTACTGGGGCTGCAATCAGCCATCTAAAAGAAAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E351478" ref_strand="+" ref_description="SGN-E351478 [cTOS-12-A3]">
      <seq>tggttttcctggtgttcctccagcttccacttcttcatctctacaaaagaagaacccctctccttagtcaagaatacagttacacaaacacctgtcatatagcttggcaacttctttttccttatgcctctgtacttctccaataaacctactccactttgttttactaccttctttgtttcttgatttctgtttacctttataatttttatcctcggtttcatcttgtttcgttttgttttgttagacatattagataggaaatcaagtgattgtatgatatgtaagctacttcaataaaagctaaacttatcagcgactgtgtttatagaagataatggctattgctagtagatatttaacctttagtgttaaagaaaaattgtagacctgctggtattacatgtgtcaggaaccaaatacctatatatagtttctgaacttctgctcaacagaagagatgaattgaacgaattcttggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="31072" stop="29989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30772" g_stop="30289" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="484" r_length="484" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E351478" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30772" e_stop="30289"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTTTCCTGGTGTTCCTCCAGCTTCCACTTCTTCATCTCTACAAAAGAAGAACCCCTCTCCTTAGTCAAGAATACAGTTACACAAACACCTGTCATATAGCTTGGCAACTTCTTTTTCCTTATGCCTCTGTACTTCTCCAATAAACCTACTCCACTTTGTTTTACTACCTTCTTTGTTTCTTGATTTCTGTTTACCTTTATAATTTTTATCCTCGGTTTCATCTTGTTTCGTTTTGTTTTGTTAGACATATTAGATAGGAAATCAAGTGATTGTATGATATGTAAGCTACTTCAATAAAAGCTAAACTTATCAGCGACTGTGTTTATAGAAGATAATGGCTATTGCTAGTAGATATTTAACCTTTAGTGTTAAAGAAAAATTGTAGACCTGCTGGTATTACATGTGTCAGGAACCAAATACCTATATATAGTTTCTGAACTTCTGCTCAACAGAAGAGATGAATTGAACGAATTCTTGGATG</genome_strand>
        <mrna_strand>TGGTTTTCCTGGTGTTCCTCCAGCTTCCACTTCTTCATCTCTACAAAAGAAGAACCCCTCTCCTTAGTCAAGAATACAGTTACACAAACACCTGTCATATAGCTTGGCAACTTCTTTTTCCTTATGCCTCTGTACTTCTCCAATAAACCTACTCCACTTTGTTTTACTACCTTCTTTGTTTCTTGATTTCTGTTTACCTTTATAATTTTTATCCTCGGTTTCATCTTGTTTCGTTTTGTTTTGTTAGACATATTAGATAGGAAATCAAGTGATTGTATGATATGTAAGCTACTTCAATAAAAGCTAAACTTATCAGCGACTGTGTTTATAGAAGATAATGGCTATTGCTAGTAGATATTTAACCTTTAGTGTTAAAGAAAAATTGTAGACCTGCTGGTATTACATGTGTCAGGAACCAAATACCTATATATAGTTTCTGAACTTCTGCTCAACAGAAGAGATGAATTGAACGAATTCTTGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E352317" ref_strand="+" ref_description="SGN-E352317 [cTOS-9-O17]">
      <seq>cagaaactgcagctaagccaaattttttcaatccaataggaggacttcccctgcctccaaatccacttcttccaccaccttcaatccttcctccaaacccatttctacctccaccttctattattcctcctatcatcccatctcctcctccttccatatttcctcccttattcccttctcctccaccttcaatatttcctccattaattccttcacctccacgttctccaccttcattattccctccgcttatcccaccgttcatacctggtttaactccatctcccccaccaccgcccccttcactcttcccaccaatcatacctggttttcctggtgttcctccagcttccacttcttcatctctacaaaagaagaacccctctccttagtcaagaatacagttacacaaacacctgtcatatagcttggcaacttctttttccttatgcctctgtacttctccaataaacctactccactttgttttactaccttctttgtttcttgatttctgtttacctttataatttttatcctcgggttcatcttgtttcgntttgttttgttagacatattagataggaaatcaagtgattgtatgatatgtaagctacttcaataaaagctaaacttatcagcgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="31397" stop="30152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31097" g_stop="30452" g_length="646"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="646" r_length="646" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E352317" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352317" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31097" e_stop="30452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAACTGCAGCTAAGCCAAATTTTTTCAATCCAATAGGAGGACTTCCCCTGCCTCCAAATCCACTTCTTCCACCACCTTCAATCCTTCCTCCAAACCCATTTCTACCTCCACCTTCTATTATTCCTCCTATCATCCCATCTCCTCCTCCTTCCATATTTCCTCCCTTATTCCCTTCTCCTCCACCTTCAATATTTCCTCCATTAATTCCTTCACCTCCACGTTCTCCACCTTCATTATTCCCTCCGCTTATCCCACCGTTCATACCTGGTTTAACTCCATCTCCCCCACCACCGCCCCCTTCACTCTTCCCACCAATCATACCTGGTTTTCCTGGTGTTCCTCCAGCTTCCACTTCTTCATCTCTACAAAAGAAGAACCCCTCTCCTTAGTCAAGAATACAGTTACACAAACACCTGTCATATAGCTTGGCAACTTCTTTTTCCTTATGCCTCTGTACTTCTCCAATAAACCTACTCCACTTTGTTTTACTACCTTCTTTGTTTCTTGATTTCTGTTTACCTTTATAATTTTTATCCTCGGTTTCATCTTGTTTCGTTTTGTTTTGTTAGACATATTAGATAGGAAATCAAGTGATTGTATGATATGTAAGCTACTTCAATAAAAGCTAAACTTATCAGCGACT</genome_strand>
        <mrna_strand>CAGAAACTGCAGCTAAGCCAAATTTTTTCAATCCAATAGGAGGACTTCCCCTGCCTCCAAATCCACTTCTTCCACCACCTTCAATCCTTCCTCCAAACCCATTTCTACCTCCACCTTCTATTATTCCTCCTATCATCCCATCTCCTCCTCCTTCCATATTTCCTCCCTTATTCCCTTCTCCTCCACCTTCAATATTTCCTCCATTAATTCCTTCACCTCCACGTTCTCCACCTTCATTATTCCCTCCGCTTATCCCACCGTTCATACCTGGTTTAACTCCATCTCCCCCACCACCGCCCCCTTCACTCTTCCCACCAATCATACCTGGTTTTCCTGGTGTTCCTCCAGCTTCCACTTCTTCATCTCTACAAAAGAAGAACCCCTCTCCTTAGTCAAGAATACAGTTACACAAACACCTGTCATATAGCTTGGCAACTTCTTTTTCCTTATGCCTCTGTACTTCTCCAATAAACCTACTCCACTTTGTTTTACTACCTTCTTTGTTTCTTGATTTCTGTTTACCTTTATAATTTTTATCCTCGGGTTCATCTTGTTTCGNTTTGTTTTGTTAGACATATTAGATAGGAAATCAAGTGATTGTATGATATGTAAGCTACTTCAATAAAAGCTAAACTTATCAGCGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E374549" ref_strand="+" ref_description="SGN-E374549 [TUS-15-B11]">
      <seq>tcaatcagaaactgcagctaagccaaattttttcaatccaataggaggacttcccctgcctccaaatccacttcttccaccaccttcaatccttcctccaaacccatttctacctccaccttctattattcctcctatcatcccatctcctcctccttccatatttcctcccttattcccttctcctccaccttcaatatttcctccattaattccttcacctccacgttctccaccttcattattccctccgcttatcccaccgttcatacctggtttaactccatctcccccaccaccgcccccttcactcttcccaccaatcatacctggttttcctggtgttcctccagcttccacttcttcatctctacaaaagaagaacccctctccttagtcaagaatacagttacacaaacacctgtcatatagcttggcaacttctttttccttatgcctctgtacttctccaataaacctactccactttgttttactaccttctttgtttcttgatttctgtttacctttataatttttatcctcggtttcatcttgtttcgttttgttttgttagacatattagataggaaatcaagtgattgtatgatatgtaagctacttcaataaaagctaaacttatcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="31402" stop="30158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31102" g_stop="30458" g_length="645"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="645" r_length="645" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="646" polyA_stop="660"/>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E374549" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374549" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31102" e_stop="30458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATCAGAAACTGCAGCTAAGCCAAATTTTTTCAATCCAATAGGAGGACTTCCCCTGCCTCCAAATCCACTTCTTCCACCACCTTCAATCCTTCCTCCAAACCCATTTCTACCTCCACCTTCTATTATTCCTCCTATCATCCCATCTCCTCCTCCTTCCATATTTCCTCCCTTATTCCCTTCTCCTCCACCTTCAATATTTCCTCCATTAATTCCTTCACCTCCACGTTCTCCACCTTCATTATTCCCTCCGCTTATCCCACCGTTCATACCTGGTTTAACTCCATCTCCCCCACCACCGCCCCCTTCACTCTTCCCACCAATCATACCTGGTTTTCCTGGTGTTCCTCCAGCTTCCACTTCTTCATCTCTACAAAAGAAGAACCCCTCTCCTTAGTCAAGAATACAGTTACACAAACACCTGTCATATAGCTTGGCAACTTCTTTTTCCTTATGCCTCTGTACTTCTCCAATAAACCTACTCCACTTTGTTTTACTACCTTCTTTGTTTCTTGATTTCTGTTTACCTTTATAATTTTTATCCTCGGTTTCATCTTGTTTCGTTTTGTTTTGTTAGACATATTAGATAGGAAATCAAGTGATTGTATGATATGTAAGCTACTTCAATAAAAGCTAAACTTATCA</genome_strand>
        <mrna_strand>TCAATCAGAAACTGCAGCTAAGCCAAATTTTTTCAATCCAATAGGAGGACTTCCCCTGCCTCCAAATCCACTTCTTCCACCACCTTCAATCCTTCCTCCAAACCCATTTCTACCTCCACCTTCTATTATTCCTCCTATCATCCCATCTCCTCCTCCTTCCATATTTCCTCCCTTATTCCCTTCTCCTCCACCTTCAATATTTCCTCCATTAATTCCTTCACCTCCACGTTCTCCACCTTCATTATTCCCTCCGCTTATCCCACCGTTCATACCTGGTTTAACTCCATCTCCCCCACCACCGCCCCCTTCACTCTTCCCACCAATCATACCTGGTTTTCCTGGTGTTCCTCCAGCTTCCACTTCTTCATCTCTACAAAAGAAGAACCCCTCTCCTTAGTCAAGAATACAGTTACACAAACACCTGTCATATAGCTTGGCAACTTCTTTTTCCTTATGCCTCTGTACTTCTCCAATAAACCTACTCCACTTTGTTTTACTACCTTCTTTGTTTCTTGATTTCTGTTTACCTTTATAATTTTTATCCTCGGTTTCATCTTGTTTCGTTTTGTTTTGTTAGACATATTAGATAGGAAATCAAGTGATTGTATGATATGTAAGCTACTTCAATAAAAGCTAAACTTATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E379079" ref_strand="+" ref_description="SGN-E379079 [TUS-1-L19]">
      <seq>tcaatcagaaactgcagctaagccaaattttttcaatccaataggaggacttcccctgcctccaaatccacttcttccaccaccttcaatccttcctccaaacccatttctacctccaccttctattattcctcctatcatcccatctcctcctccttccatatttcctcccttattcccttctcctccaccttcaatatttcctccattaattccttcacctccacgttctccaccttcattattccctccgcttatcccaccgttcatacctggtttaactccatctcccccaccaccgcccccttcactcttcccaccaatcatacctggttttcctggtgttcctccagcttccacttcttcatctctacaaaagaagaacccctctccttagtcaagaatacagttacacaaacacctgtcatatagcttggcaacttctttttccttatgcctctgtacttctccaataaacctactccactttgttttactaccttctttgtttcttgatttctgtttacctttataatttttatcctcggtttcatcttgtttcgttttgttttgttagacatattagataggaaatcaagtgattgtatgatatgtaagctacttcaataaaagctaaacttatcaaaaaaaaaaaaaaaaaaaaaaaaactcaggggggggcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="31402" stop="30158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31102" g_stop="30458" g_length="645"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="645" r_length="645" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="646" polyA_stop="670"/>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E379079" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31102" e_stop="30458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATCAGAAACTGCAGCTAAGCCAAATTTTTTCAATCCAATAGGAGGACTTCCCCTGCCTCCAAATCCACTTCTTCCACCACCTTCAATCCTTCCTCCAAACCCATTTCTACCTCCACCTTCTATTATTCCTCCTATCATCCCATCTCCTCCTCCTTCCATATTTCCTCCCTTATTCCCTTCTCCTCCACCTTCAATATTTCCTCCATTAATTCCTTCACCTCCACGTTCTCCACCTTCATTATTCCCTCCGCTTATCCCACCGTTCATACCTGGTTTAACTCCATCTCCCCCACCACCGCCCCCTTCACTCTTCCCACCAATCATACCTGGTTTTCCTGGTGTTCCTCCAGCTTCCACTTCTTCATCTCTACAAAAGAAGAACCCCTCTCCTTAGTCAAGAATACAGTTACACAAACACCTGTCATATAGCTTGGCAACTTCTTTTTCCTTATGCCTCTGTACTTCTCCAATAAACCTACTCCACTTTGTTTTACTACCTTCTTTGTTTCTTGATTTCTGTTTACCTTTATAATTTTTATCCTCGGTTTCATCTTGTTTCGTTTTGTTTTGTTAGACATATTAGATAGGAAATCAAGTGATTGTATGATATGTAAGCTACTTCAATAAAAGCTAAACTTATCA</genome_strand>
        <mrna_strand>TCAATCAGAAACTGCAGCTAAGCCAAATTTTTTCAATCCAATAGGAGGACTTCCCCTGCCTCCAAATCCACTTCTTCCACCACCTTCAATCCTTCCTCCAAACCCATTTCTACCTCCACCTTCTATTATTCCTCCTATCATCCCATCTCCTCCTCCTTCCATATTTCCTCCCTTATTCCCTTCTCCTCCACCTTCAATATTTCCTCCATTAATTCCTTCACCTCCACGTTCTCCACCTTCATTATTCCCTCCGCTTATCCCACCGTTCATACCTGGTTTAACTCCATCTCCCCCACCACCGCCCCCTTCACTCTTCCCACCAATCATACCTGGTTTTCCTGGTGTTCCTCCAGCTTCCACTTCTTCATCTCTACAAAAGAAGAACCCCTCTCCTTAGTCAAGAATACAGTTACACAAACACCTGTCATATAGCTTGGCAACTTCTTTTTCCTTATGCCTCTGTACTTCTCCAATAAACCTACTCCACTTTGTTTTACTACCTTCTTTGTTTCTTGATTTCTGTTTACCTTTATAATTTTTATCCTCGGTTTCATCTTGTTTCGTTTTGTTTTGTTAGACATATTAGATAGGAAATCAAGTGATTGTATGATATGTAAGCTACTTCAATAAAAGCTAAACTTATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E374548" ref_strand="+" ref_description="SGN-E374548 [TUS-15-B11](-)">
      <seq>tcccatctcctcctccttccatatttcctcccttattcccttctcctccaccttcaatatttcctccattaattccttcacctccacgttctccaccttcattattccctccgcttatcccaccgttcatacctggtttaactccatctcccccaccaccgcccccttcactcttcccaccaatcatacctggttttcctggtgttcctccagcttccacttcttcatctctacaaaagaagaacccctctccttagtcaagaatacagttacacaaacacctgtcatatagcttggcaacttctttttccttatgcctctgtacttctccaataaacctactccactttgttttactaccttctttgtttcttgatttctgtttacctttataatttttatcctcggtttcatcttgtttcgttttgttttgttagacatattagataggaaatcaagtgattgtatgatatgtaagctacttcaataaaagctaaacttatcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="31262" stop="30158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30962" g_stop="30458" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="506" polyA_stop="520"/>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E374548" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374548" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30962" e_stop="30458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCATCTCCTCCTCCTTCCATATTTCCTCCCTTATTCCCTTCTCCTCCACCTTCAATATTTCCTCCATTAATTCCTTCACCTCCACGTTCTCCACCTTCATTATTCCCTCCGCTTATCCCACCGTTCATACCTGGTTTAACTCCATCTCCCCCACCACCGCCCCCTTCACTCTTCCCACCAATCATACCTGGTTTTCCTGGTGTTCCTCCAGCTTCCACTTCTTCATCTCTACAAAAGAAGAACCCCTCTCCTTAGTCAAGAATACAGTTACACAAACACCTGTCATATAGCTTGGCAACTTCTTTTTCCTTATGCCTCTGTACTTCTCCAATAAACCTACTCCACTTTGTTTTACTACCTTCTTTGTTTCTTGATTTCTGTTTACCTTTATAATTTTTATCCTCGGTTTCATCTTGTTTCGTTTTGTTTTGTTAGACATATTAGATAGGAAATCAAGTGATTGTATGATATGTAAGCTACTTCAATAAAAGCTAAACTTATCA</genome_strand>
        <mrna_strand>TCCCATCTCCTCCTCCTTCCATATTTCCTCCCTTATTCCCTTCTCCTCCACCTTCAATATTTCCTCCATTAATTCCTTCACCTCCACGTTCTCCACCTTCATTATTCCCTCCGCTTATCCCACCGTTCATACCTGGTTTAACTCCATCTCCCCCACCACCGCCCCCTTCACTCTTCCCACCAATCATACCTGGTTTTCCTGGTGTTCCTCCAGCTTCCACTTCTTCATCTCTACAAAAGAAGAACCCCTCTCCTTAGTCAAGAATACAGTTACACAAACACCTGTCATATAGCTTGGCAACTTCTTTTTCCTTATGCCTCTGTACTTCTCCAATAAACCTACTCCACTTTGTTTTACTACCTTCTTTGTTTCTTGATTTCTGTTTACCTTTATAATTTTTATCCTCGGTTTCATCTTGTTTCGTTTTGTTTTGTTAGACATATTAGATAGGAAATCAAGTGATTGTATGATATGTAAGCTACTTCAATAAAAGCTAAACTTATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E201788" ref_strand="+" ref_description="SGN-E201788 [cLEC-11-H9]">
      <seq>tcaatcagaaactgcagctaatccaaattttttcaatccaataggaggacttcccctgcctccaaatccacttcttccaccaccttcaatccttcctccaaacccatttctacctccaccttctattattcctcctatcatcccatctcctcctccttccatatttcctcccttattcccttctcctccaccttcaatatttcctccattaattccttcacctccacgttctccaccttcattattccctccgcttatcccaccgttcatacctggtttaactccatctcccccaccaccgcccccttcactcttcccaccaatcatacctggttttcctggtgttcctccagcttccacttcttcatctctacaaaagaagaacccctctccttagtcaagaatacagttacacaaacacctgtcatatagcttggcaacttctttttccttatgcctctgtacttctccaataaacctactccactttgttttactaccttctttgtttcttgatttctgtttacctttataatttttatcctcggtttcatcttgtttcgttttgttttgttagacatattagataggaaatcaagtgattgtatgatatgtaagctacttcaataaaagctaaacttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="31402" stop="30159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31102" g_stop="30459" g_length="644"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="644" r_length="644" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E201788" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31102" e_stop="30459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATCAGAAACTGCAGCTAAGCCAAATTTTTTCAATCCAATAGGAGGACTTCCCCTGCCTCCAAATCCACTTCTTCCACCACCTTCAATCCTTCCTCCAAACCCATTTCTACCTCCACCTTCTATTATTCCTCCTATCATCCCATCTCCTCCTCCTTCCATATTTCCTCCCTTATTCCCTTCTCCTCCACCTTCAATATTTCCTCCATTAATTCCTTCACCTCCACGTTCTCCACCTTCATTATTCCCTCCGCTTATCCCACCGTTCATACCTGGTTTAACTCCATCTCCCCCACCACCGCCCCCTTCACTCTTCCCACCAATCATACCTGGTTTTCCTGGTGTTCCTCCAGCTTCCACTTCTTCATCTCTACAAAAGAAGAACCCCTCTCCTTAGTCAAGAATACAGTTACACAAACACCTGTCATATAGCTTGGCAACTTCTTTTTCCTTATGCCTCTGTACTTCTCCAATAAACCTACTCCACTTTGTTTTACTACCTTCTTTGTTTCTTGATTTCTGTTTACCTTTATAATTTTTATCCTCGGTTTCATCTTGTTTCGTTTTGTTTTGTTAGACATATTAGATAGGAAATCAAGTGATTGTATGATATGTAAGCTACTTCAATAAAAGCTAAACTTATC</genome_strand>
        <mrna_strand>TCAATCAGAAACTGCAGCTAATCCAAATTTTTTCAATCCAATAGGAGGACTTCCCCTGCCTCCAAATCCACTTCTTCCACCACCTTCAATCCTTCCTCCAAACCCATTTCTACCTCCACCTTCTATTATTCCTCCTATCATCCCATCTCCTCCTCCTTCCATATTTCCTCCCTTATTCCCTTCTCCTCCACCTTCAATATTTCCTCCATTAATTCCTTCACCTCCACGTTCTCCACCTTCATTATTCCCTCCGCTTATCCCACCGTTCATACCTGGTTTAACTCCATCTCCCCCACCACCGCCCCCTTCACTCTTCCCACCAATCATACCTGGTTTTCCTGGTGTTCCTCCAGCTTCCACTTCTTCATCTCTACAAAAGAAGAACCCCTCTCCTTAGTCAAGAATACAGTTACACAAACACCTGTCATATAGCTTGGCAACTTCTTTTTCCTTATGCCTCTGTACTTCTCCAATAAACCTACTCCACTTTGTTTTACTACCTTCTTTGTTTCTTGATTTCTGTTTACCTTTATAATTTTTATCCTCGGTTTCATCTTGTTTCGTTTTGTTTTGTTAGACATATTAGATAGGAAATCAAGTGATTGTATGATATGTAAGCTACTTCAATAAAAGCTAAACTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E420591" ref_strand="+" ref_description="SGN-E420591 [STM-31-B1]">
      <seq>taccttttattgaagtagcttacatatcatacaatcacttgatttcctatctaatatgtctaacaaaacataacgaaacaagatgaaacagaggataaaaattaccaaggtaaacagaaatcaagaaacaaagaagggagttaaacaaagtggagtaggtttattggagaagtacagaggcataaggaaaaagaagttgccaagctatatggcaggtgtttgtgtaactgtatttttgactaaggagaggggtttttattttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="+" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="30167" stop="31029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30467" g_stop="30730" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="+" ref_id="SGN-E420591" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>264</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E420591" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30467" e_stop="30730"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCTTTTATTGAAGTAGCTTACATATCATACAATCACTTGATTTCCTATCTAATATGTCTAACAAAACAAAACGAAACAAGATGAAACCGAGGATAAAAATTATAAAGGTAAACAGAAATCAAGAAACAAAGAAGGTAGTAAAACAAAGTGGAGTAGGTTTATTGGAGAAGTACAGAGGCATAAGGAAAAAGAAGTTGCCAAGCTATATGACAGGTGTTTGTGTAACTGTATTCTTGACTAAGGAGAGGGGTTCTTCTTTTGT</genome_strand>
        <mrna_strand>TACCTTTTATTGAAGTAGCTTACATATCATACAATCACTTGATTTCCTATCTAATATGTCTAACAAAACATAACGAAACAAGATGAAACAGAGGATAAAAATTACCAAGGTAAACAGAAATCAAGAAACAAAGAAGGGAGTTAAACAAAGTGGAGTAGGTTTATTGGAGAAGTACAGAGGCATAAGGAAAAAGAAGTTGCCAAGCTATATGGCAGGTGTTTGTGTAACTGTATTTTTGACTAAGGAGAGGGGTTTTTATTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E379275" ref_strand="+" ref_description="SGN-E379275 [TUS-1-L19](-)">
      <seq>ctcaatcagaaactgcagctaagccaaattttttcaatccaataggaggacttcccctgcctccaaatccacttcttccaccaccttcaatccttcctccaaacccatttctacctccaccttctattattcctcctatcatcccatctcctcctccttccatatttcctcccttattcccttctcctccaccttcaatatttcctccattaattccttcacctccacgttctccaccttcattattccctccgcttatcccaccgttcatacctggtttaactccatctcccccaccaccgcccccttcactcttcccaccaatcatacctggttttcctggtgttcctccagcttccacttcttcatctctacaaaagaagaacccctctccttagtcaagaatacagttacacaaacacctgtcatatagcttggcaacttctttttccttatgcctctgtacttctccaataaacctactccactttgttttactaccttctttgtttcttgatttctgtttacctttataatttttatcctcggtttcatcttgtttcgttttgttttgttagacatatcagataggaaatcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="31403" stop="30205"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31103" g_stop="30504" g_length="600"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="600" r_length="600" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E379275" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379275" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31103" e_stop="30504"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAATCAGAAACTGCAGCTAAGCCAAATTTTTTCAATCCAATAGGAGGACTTCCCCTGCCTCCAAATCCACTTCTTCCACCACCTTCAATCCTTCCTCCAAACCCATTTCTACCTCCACCTTCTATTATTCCTCCTATCATCCCATCTCCTCCTCCTTCCATATTTCCTCCCTTATTCCCTTCTCCTCCACCTTCAATATTTCCTCCATTAATTCCTTCACCTCCACGTTCTCCACCTTCATTATTCCCTCCGCTTATCCCACCGTTCATACCTGGTTTAACTCCATCTCCCCCACCACCGCCCCCTTCACTCTTCCCACCAATCATACCTGGTTTTCCTGGTGTTCCTCCAGCTTCCACTTCTTCATCTCTACAAAAGAAGAACCCCTCTCCTTAGTCAAGAATACAGTTACACAAACACCTGTCATATAGCTTGGCAACTTCTTTTTCCTTATGCCTCTGTACTTCTCCAATAAACCTACTCCACTTTGTTTTACTACCTTCTTTGTTTCTTGATTTCTGTTTACCTTTATAATTTTTATCCTCGGTTTCATCTTGTTTCGTTTTGTTTTGTTAGACATATTAGATAGGAAATCAAG</genome_strand>
        <mrna_strand>CTCAATCAGAAACTGCAGCTAAGCCAAATTTTTTCAATCCAATAGGAGGACTTCCCCTGCCTCCAAATCCACTTCTTCCACCACCTTCAATCCTTCCTCCAAACCCATTTCTACCTCCACCTTCTATTATTCCTCCTATCATCCCATCTCCTCCTCCTTCCATATTTCCTCCCTTATTCCCTTCTCCTCCACCTTCAATATTTCCTCCATTAATTCCTTCACCTCCACGTTCTCCACCTTCATTATTCCCTCCGCTTATCCCACCGTTCATACCTGGTTTAACTCCATCTCCCCCACCACCGCCCCCTTCACTCTTCCCACCAATCATACCTGGTTTTCCTGGTGTTCCTCCAGCTTCCACTTCTTCATCTCTACAAAAGAAGAACCCCTCTCCTTAGTCAAGAATACAGTTACACAAACACCTGTCATATAGCTTGGCAACTTCTTTTTCCTTATGCCTCTGTACTTCTCCAATAAACCTACTCCACTTTGTTTTACTACCTTCTTTGTTTCTTGATTTCTGTTTACCTTTATAATTTTTATCCTCGGTTTCATCTTGTTTCGTTTTGTTTTGTTAGACATATCAGATAGGAAATCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E287740" ref_strand="+" ref_description="SGN-E287740 [cLES-9-L24]">
      <seq>caagatccaccagcgccaggtactttacttccacctcttcctaggctacctcctttaccattgctccctcctttgccagatcttccaggacttccaatatcaccagtgcctaaagactctagcaaatactactctcaatcagaaactgcagctaagccaaattttttcaatccaataggaggacttcccctgcctccaaatccacttcttccaccaccttcaatccttcctccaaacccatttctacctccaccttctattattcctcctatcatcccatctcctcctccttccatatttcctcccttattcccttctcctccaccttcaatatttcctccattaattccttcacctccacgttctccaccttcattattccctccgcttatcccaccgttcatacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="31536" stop="30529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31236" g_stop="30829" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="408" r_length="408" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E287740" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31236" e_stop="30829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGATCCACCAGCGCCAGGTACTTTACTTCCACCTCTTCCTAGGCTACCTCCTTTACCATTGCTCCCTCCTTTGCCAGATCTTCCAGGACTTCCAATATCACCAGTGCCTAAAGACTCTAGCAAATACTACTCTCAATCAGAAACTGCAGCTAAGCCAAATTTTTTCAATCCAATAGGAGGACTTCCCCTGCCTCCAAATCCACTTCTTCCACCACCTTCAATCCTTCCTCCAAACCCATTTCTACCTCCACCTTCTATTATTCCTCCTATCATCCCATCTCCTCCTCCTTCCATATTTCCTCCCTTATTCCCTTCTCCTCCACCTTCAATATTTCCTCCATTAATTCCTTCACCTCCACGTTCTCCACCTTCATTATTCCCTCCGCTTATCCCACCGTTCATACCT</genome_strand>
        <mrna_strand>CAAGATCCACCAGCGCCAGGTACTTTACTTCCACCTCTTCCTAGGCTACCTCCTTTACCATTGCTCCCTCCTTTGCCAGATCTTCCAGGACTTCCAATATCACCAGTGCCTAAAGACTCTAGCAAATACTACTCTCAATCAGAAACTGCAGCTAAGCCAAATTTTTTCAATCCAATAGGAGGACTTCCCCTGCCTCCAAATCCACTTCTTCCACCACCTTCAATCCTTCCTCCAAACCCATTTCTACCTCCACCTTCTATTATTCCTCCTATCATCCCATCTCCTCCTCCTTCCATATTTCCTCCCTTATTCCCTTCTCCTCCACCTTCAATATTTCCTCCATTAATTCCTTCACCTCCACGTTCTCCACCTTCATTATTCCCTCCGCTTATCCCACCGTTCATACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E485596" ref_strand="+" ref_description="SGN-E485596 [cSTE-18-P9]">
      <seq>gtcgcagtagaatgtgcagactcagtcagaagatcaagtttttacaaggaggtgaaaaccaatgagcatgggaaattcagtgtagaccttcctatttctgtaagcaaacatgtcaagaaaatcaagggatgttctgtgaagctgattaagagcagcgagccatattgtgctgtggcgtcgacagcaacttcatcttctcttcatctcaaatcgagaaaacaagggactcacatcttctctgctggtttcttcactttcaaacctctcaaccagccagatctctgtagccaaaagccaagcatccaaaattcaaaaaagaaactaacagatcctcaaaagtctgctatttcaaatcccaatgatcctacattttacccaccaattcaagatccaccagcgcagggtactttacttccacctcttcctaggctacctcctttaccattgctccctcctttgccagatcttccaggacttccaatatcaccagtgcctaaagactctagcaaatactactctcaatcagaagctgcagctaagccaaatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="31920" stop="30772"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31620" g_stop="31072" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="549" r_length="549" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E485596" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E485596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31620" e_stop="31072"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGCTGTAGAATGTGCAGACTCGGTCAGAAGATCAAGTTTTTACAAGGAGGTGAAAACCAATGAGCATGGGAAATTCAGTGTAGACCTTCCTATTTCTGTAAGTAAACATGTCAAGAAAATCAAGGGATGTTCTGTGAAGCTGATCAAGAGCAGCGAGCCATATTGTGCTGTGGCGTCGACAGCAACTTCATCTTCCCTTCATCTCAAGTCAAGAACACAAGGGACTCACATCTTCTCTGCTGGTTTCTTCACTTTCAAGCCTCTCAACCAGCCAGATCTCTGTAGCCAAAAGCCAAGCATCCAAAAGTCAAAAAAGAAATTAACAGATCCTCAAAAGTCTGCTATTTCAAATCCCAATGATCCTACATTTTACCCTCCAATTCAAGATCCACCAGCGCCAGGTACTTTACTTCCACCTCTTCCTAGGCTACCTCCTTTACCATTGCTCCCTCCTTTGCCAGATCTTCCAGGACTTCCAATATCACCAGTGCCTAAAGACTCTAGCAAATACTACTCTCAATCAGAAACTGCAGCTAAGCCAAATTTT</genome_strand>
        <mrna_strand>GTCGCAGTAGAATGTGCAGACTCAGTCAGAAGATCAAGTTTTTACAAGGAGGTGAAAACCAATGAGCATGGGAAATTCAGTGTAGACCTTCCTATTTCTGTAAGCAAACATGTCAAGAAAATCAAGGGATGTTCTGTGAAGCTGATTAAGAGCAGCGAGCCATATTGTGCTGTGGCGTCGACAGCAACTTCATCTTCTCTTCATCTCAAATCGAGAAAACAAGGGACTCACATCTTCTCTGCTGGTTTCTTCACTTTCAAACCTCTCAACCAGCCAGATCTCTGTAGCCAAAAGCCAAGCATCCAAAATTCAAAAAAGAAACTAACAGATCCTCAAAAGTCTGCTATTTCAAATCCCAATGATCCTACATTTTACCCACCAATTCAAGATCCACCAGCGCAGGGTACTTTACTTCCACCTCTTCCTAGGCTACCTCCTTTACCATTGCTCCCTCCTTTGCCAGATCTTCCAGGACTTCCAATATCACCAGTGCCTAAAGACTCTAGCAAATACTACTCTCAATCAGAAGCTGCAGCTAAGCCAAATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E371214" ref_strand="+" ref_description="SGN-E371214 [TUS-28-J9]">
      <seq>tttcgacttcacaggcagagaatactaggcataggcatcactcaaccgcagttattgagggaactgttttctgtgatacctgcttccagcaacacttctcaggggctagtcacttcatttcaggtgctactgtcgctgtagaatgtgcagactcggtcagaagatcaagtttttacaaggaggtgaaaaccaatgagcatgggaaattcagtgtagaccttcctatttctgtaagtaaacatgtcaagaaaatcaagggatgttctgtgaagctgatcaagagcagcgagccatattgtgctgtggcgtcgacagcaacttcatcttcccttcatctcaagtcaagaacacaagggactcacatcttctctgctggtttcttcactttcaagcctctcaaccagccagatctctgtagccaaaagccaagcatccaaaagtcaaaaaagaaattaacagatcctcaaaagtctgctatttcaaatcccaatgatcctacattttaccctccaattcaagatccaccagcgccaggtactttacttccacctcttcctaggctacctcctttaccattgctccctcctttgccagatcttccaggacttccaatatcaccagtgcctaaagactctagcaaatactactctcaatcagaaactgcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="32146" stop="30786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31846" g_stop="31724" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31723" i_stop="31629" i_length="95">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31628" g_stop="31086" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="666" r_length="543" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E371214" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371214" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31846" e_stop="31724"/>
          <exon e_start="31628" e_stop="31086"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCGACTTCACAGGCAGAGAATACTAGGCATAGGCATCACTCAACCGCAGTTATTGAGGGAACTGTTTTCTGTGATACCTGCTTCCAGCAACACTTCTCAGGGGCTAGTCACTTCATTTCAGGTTCATCATTCTTGTCAAAATCTTTAACTATATCATCTTTCTTGGGTTCTCATTGAGCTTGCAGCTCATTAATGTGCATTTAAATCTGTGTTTAGGTGCTACTGTCGCTGTAGAATGTGCAGACTCGGTCAGAAGATCAAGTTTTTACAAGGAGGTGAAAACCAATGAGCATGGGAAATTCAGTGTAGACCTTCCTATTTCTGTAAGTAAACATGTCAAGAAAATCAAGGGATGTTCTGTGAAGCTGATCAAGAGCAGCGAGCCATATTGTGCTGTGGCGTCGACAGCAACTTCATCTTCCCTTCATCTCAAGTCAAGAACACAAGGGACTCACATCTTCTCTGCTGGTTTCTTCACTTTCAAGCCTCTCAACCAGCCAGATCTCTGTAGCCAAAAGCCAAGCATCCAAAAGTCAAAAAAGAAATTAACAGATCCTCAAAAGTCTGCTATTTCAAATCCCAATGATCCTACATTTTACCCTCCAATTCAAGATCCACCAGCGCCAGGTACTTTACTTCCACCTCTTCCTAGGCTACCTCCTTTACCATTGCTCCCTCCTTTGCCAGATCTTCCAGGACTTCCAATATCACCAGTGCCTAAAGACTCTAGCAAATACTACTCTCAATCAGAAACTGCAG</genome_strand>
        <mrna_strand>TTTCGACTTCACAGGCAGAGAATACTAGGCATAGGCATCACTCAACCGCAGTTATTGAGGGAACTGTTTTCTGTGATACCTGCTTCCAGCAACACTTCTCAGGGGCTAGTCACTTCATTTCAG...............................................................................................GTGCTACTGTCGCTGTAGAATGTGCAGACTCGGTCAGAAGATCAAGTTTTTACAAGGAGGTGAAAACCAATGAGCATGGGAAATTCAGTGTAGACCTTCCTATTTCTGTAAGTAAACATGTCAAGAAAATCAAGGGATGTTCTGTGAAGCTGATCAAGAGCAGCGAGCCATATTGTGCTGTGGCGTCGACAGCAACTTCATCTTCCCTTCATCTCAAGTCAAGAACACAAGGGACTCACATCTTCTCTGCTGGTTTCTTCACTTTCAAGCCTCTCAACCAGCCAGATCTCTGTAGCCAAAAGCCAAGCATCCAAAAGTCAAAAAAGAAATTAACAGATCCTCAAAAGTCTGCTATTTCAAATCCCAATGATCCTACATTTTACCCTCCAATTCAAGATCCACCAGCGCCAGGTACTTTACTTCCACCTCTTCCTAGGCTACCTCCTTTACCATTGCTCCCTCCTTTGCCAGATCTTCCAGGACTTCCAATATCACCAGTGCCTAAAGACTCTAGCAAATACTACTCTCAATCAGAAACTGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E427223" ref_strand="+" ref_description="SGN-E427223 [STM-48-C3]">
      <seq>gtcgcagtagaatgtgcagactcagtcagaagatcaagtttttacaaggaggtgaaaaccaatgagcatgggaaattcagtgtagaccttcctatttctgtaagcaaacatgtcaagaaaatcaagggatgttctgtgaagctgattaagagcagcgagccatattgtgctgtggcgtcgacagcaacttcatcttctcttcatctcaaatcgagaaaacaagggactcacatcttctctgctggtttcttcactttcaaacctctcaaccagccagatctctgtagccaaaagccaagcatccaaaattcaaaaaagaaactaacagatcctcaaaagtctgctatttcaaatcccaatgatcctacattttacccaccaattcaagatccaccagcgcagggtactttacttccacctcttcctaggctacctcctttaccattgctccctcctttgccagatcttccaggacttccaatatcaccagtgcctaaagactctagcaaatactactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="31920" stop="30802"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31620" g_stop="31102" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="519" r_length="519" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E427223" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E427223" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31620" e_stop="31102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGCTGTAGAATGTGCAGACTCGGTCAGAAGATCAAGTTTTTACAAGGAGGTGAAAACCAATGAGCATGGGAAATTCAGTGTAGACCTTCCTATTTCTGTAAGTAAACATGTCAAGAAAATCAAGGGATGTTCTGTGAAGCTGATCAAGAGCAGCGAGCCATATTGTGCTGTGGCGTCGACAGCAACTTCATCTTCCCTTCATCTCAAGTCAAGAACACAAGGGACTCACATCTTCTCTGCTGGTTTCTTCACTTTCAAGCCTCTCAACCAGCCAGATCTCTGTAGCCAAAAGCCAAGCATCCAAAAGTCAAAAAAGAAATTAACAGATCCTCAAAAGTCTGCTATTTCAAATCCCAATGATCCTACATTTTACCCTCCAATTCAAGATCCACCAGCGCCAGGTACTTTACTTCCACCTCTTCCTAGGCTACCTCCTTTACCATTGCTCCCTCCTTTGCCAGATCTTCCAGGACTTCCAATATCACCAGTGCCTAAAGACTCTAGCAAATACTACTCT</genome_strand>
        <mrna_strand>GTCGCAGTAGAATGTGCAGACTCAGTCAGAAGATCAAGTTTTTACAAGGAGGTGAAAACCAATGAGCATGGGAAATTCAGTGTAGACCTTCCTATTTCTGTAAGCAAACATGTCAAGAAAATCAAGGGATGTTCTGTGAAGCTGATTAAGAGCAGCGAGCCATATTGTGCTGTGGCGTCGACAGCAACTTCATCTTCTCTTCATCTCAAATCGAGAAAACAAGGGACTCACATCTTCTCTGCTGGTTTCTTCACTTTCAAACCTCTCAACCAGCCAGATCTCTGTAGCCAAAAGCCAAGCATCCAAAATTCAAAAAAGAAACTAACAGATCCTCAAAAGTCTGCTATTTCAAATCCCAATGATCCTACATTTTACCCACCAATTCAAGATCCACCAGCGCAGGGTACTTTACTTCCACCTCTTCCTAGGCTACCTCCTTTACCATTGCTCCCTCCTTTGCCAGATCTTCCAGGACTTCCAATATCACCAGTGCCTAAAGACTCTAGCAAATACTACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E271922" ref_strand="+" ref_description="SGN-E271922 [cLEM-8-A15]">
      <seq>tttcgacttcacaggcagagaatgggaggcataggcatcactgggccgcagttattgagggaactgttttctgtgatacctgcttccagcaacacttctcaggggctagtcacttcatttcaggtgctactgtcgctgtagaatgtgcagactcggtcagaagatcaagtttttacaaggaggtgaaaaccaatgagcatgggaaattcagtgtagaccttcctatttctgtaagtaaacatgtcaagaaaatcaagggatgttctgtgaagctgatcaagagcagcgagccatattgtgctgtggcgtcgacagcaacttcatcttcccttcatctcaagtcaagaacacaagggactcacatcttctctgctggtttcttcactttcaagcctctcaaccagccagatctctgtagccaaaagccaagcatccaaaagtcaaaaaagaaattaacagatcctcaaaagtctgctatttcaaatcccaatgatcctacattttaccctccaattcaagatccaccagcgccaggtactttacttccacctcttcctaggctacctcctttaccattgctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="32146" stop="30870"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31846" g_stop="31724" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31723" i_stop="31629" i_length="95">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31628" g_stop="31170" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="582" r_length="459" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E271922" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271922" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31846" e_stop="31724"/>
          <exon e_start="31628" e_stop="31170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCGACTTCACAGGCAGAGAATACTAGGCATAGGCATCACTCAACCGCAGTTATTGAGGGAACTGTTTTCTGTGATACCTGCTTCCAGCAACACTTCTCAGGGGCTAGTCACTTCATTTCAGGTTCATCATTCTTGTCAAAATCTTTAACTATATCATCTTTCTTGGGTTCTCATTGAGCTTGCAGCTCATTAATGTGCATTTAAATCTGTGTTTAGGTGCTACTGTCGCTGTAGAATGTGCAGACTCGGTCAGAAGATCAAGTTTTTACAAGGAGGTGAAAACCAATGAGCATGGGAAATTCAGTGTAGACCTTCCTATTTCTGTAAGTAAACATGTCAAGAAAATCAAGGGATGTTCTGTGAAGCTGATCAAGAGCAGCGAGCCATATTGTGCTGTGGCGTCGACAGCAACTTCATCTTCCCTTCATCTCAAGTCAAGAACACAAGGGACTCACATCTTCTCTGCTGGTTTCTTCACTTTCAAGCCTCTCAACCAGCCAGATCTCTGTAGCCAAAAGCCAAGCATCCAAAAGTCAAAAAAGAAATTAACAGATCCTCAAAAGTCTGCTATTTCAAATCCCAATGATCCTACATTTTACCCTCCAATTCAAGATCCACCAGCGCCAGGTACTTTACTTCCACCTCTTCCTAGGCTACCTCCTTTACCATTGCTCC</genome_strand>
        <mrna_strand>TTTCGACTTCACAGGCAGAGAATGGGAGGCATAGGCATCACTGGGCCGCAGTTATTGAGGGAACTGTTTTCTGTGATACCTGCTTCCAGCAACACTTCTCAGGGGCTAGTCACTTCATTTCAG...............................................................................................GTGCTACTGTCGCTGTAGAATGTGCAGACTCGGTCAGAAGATCAAGTTTTTACAAGGAGGTGAAAACCAATGAGCATGGGAAATTCAGTGTAGACCTTCCTATTTCTGTAAGTAAACATGTCAAGAAAATCAAGGGATGTTCTGTGAAGCTGATCAAGAGCAGCGAGCCATATTGTGCTGTGGCGTCGACAGCAACTTCATCTTCCCTTCATCTCAAGTCAAGAACACAAGGGACTCACATCTTCTCTGCTGGTTTCTTCACTTTCAAGCCTCTCAACCAGCCAGATCTCTGTAGCCAAAAGCCAAGCATCCAAAAGTCAAAAAAGAAATTAACAGATCCTCAAAAGTCTGCTATTTCAAATCCCAATGATCCTACATTTTACCCTCCAATTCAAGATCCACCAGCGCCAGGTACTTTACTTCCACCTCTTCCTAGGCTACCTCCTTTACCATTGCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E202523" ref_strand="+" ref_description="SGN-E202523 [cLEC-6-L5]">
      <seq>acaggcagagaatactaggcataggcatcactcaaccgcagttattgagggaactgttttctgtgatacctgcttccagcaacacttctcaggggctagtcacttcatttcaggtgctactgtcgctgtagaatgtgcagactcggtcagaagatcaagtttttacaaggaggtgaaaaccaatgagcatgggaaattcagtgtagaccttcctatttctgtaagtaaacatgtcaagaaaatcaagggatgttctgtgaagctgatcaagagcagcgagccatattgtgctgtggcgtcgacagcaacttcatcttcccttcatctcaagtcaagaacacaagggactcacatcttctctgctggtttcttcactttcaagcctctcaaccagccagatctctgtagccaaaagccaagcatccaaaagtcaaaaaagaaattaacagatcctcaaaagtctgctatttcaaatcccaatgatcctacattttaccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="32136" stop="30943"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31836" g_stop="31724" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31723" i_stop="31629" i_length="95">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31628" g_stop="31243" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="499" r_length="386" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E202523" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202523" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31836" e_stop="31724"/>
          <exon e_start="31628" e_stop="31243"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGGCAGAGAATACTAGGCATAGGCATCACTCAACCGCAGTTATTGAGGGAACTGTTTTCTGTGATACCTGCTTCCAGCAACACTTCTCAGGGGCTAGTCACTTCATTTCAGGTTCATCATTCTTGTCAAAATCTTTAACTATATCATCTTTCTTGGGTTCTCATTGAGCTTGCAGCTCATTAATGTGCATTTAAATCTGTGTTTAGGTGCTACTGTCGCTGTAGAATGTGCAGACTCGGTCAGAAGATCAAGTTTTTACAAGGAGGTGAAAACCAATGAGCATGGGAAATTCAGTGTAGACCTTCCTATTTCTGTAAGTAAACATGTCAAGAAAATCAAGGGATGTTCTGTGAAGCTGATCAAGAGCAGCGAGCCATATTGTGCTGTGGCGTCGACAGCAACTTCATCTTCCCTTCATCTCAAGTCAAGAACACAAGGGACTCACATCTTCTCTGCTGGTTTCTTCACTTTCAAGCCTCTCAACCAGCCAGATCTCTGTAGCCAAAAGCCAAGCATCCAAAAGTCAAAAAAGAAATTAACAGATCCTCAAAAGTCTGCTATTTCAAATCCCAATGATCCTACATTTTACCCT</genome_strand>
        <mrna_strand>ACAGGCAGAGAATACTAGGCATAGGCATCACTCAACCGCAGTTATTGAGGGAACTGTTTTCTGTGATACCTGCTTCCAGCAACACTTCTCAGGGGCTAGTCACTTCATTTCAG...............................................................................................GTGCTACTGTCGCTGTAGAATGTGCAGACTCGGTCAGAAGATCAAGTTTTTACAAGGAGGTGAAAACCAATGAGCATGGGAAATTCAGTGTAGACCTTCCTATTTCTGTAAGTAAACATGTCAAGAAAATCAAGGGATGTTCTGTGAAGCTGATCAAGAGCAGCGAGCCATATTGTGCTGTGGCGTCGACAGCAACTTCATCTTCCCTTCATCTCAAGTCAAGAACACAAGGGACTCACATCTTCTCTGCTGGTTTCTTCACTTTCAAGCCTCTCAACCAGCCAGATCTCTGTAGCCAAAAGCCAAGCATCCAAAAGTCAAAAAAGAAATTAACAGATCCTCAAAAGTCTGCTATTTCAAATCCCAATGATCCTACATTTTACCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E244429" ref_strand="+" ref_description="SGN-E244429 [cLEF-3-A4]">
      <seq>aagaacatttttcattgcgtagatagaaaaaataaaaaagaaaccctttgacctctgaaattatctatttttatctttctctctattatccccgcaatctccgctattttcaggtgatacacaacagtttttgaaattttttctgaaggtcttggtcatgaagggcatcaactcattcagggtttcctgaagagagagggtgcccaattgcattttccgtaagttatattcttacaagtattgcatccataaccatctaatcacaagaatggaggattgacaatgatagccgtggaaggtttttgagttacgaacatttatttgaagacatcatcatgggtgcagtttgttgctgcttgcgagatgaatgggaagattatgccaatccaaacagctcaatatataggaactgcttatgccttcgatgttttgttcaaaacttcttgcatatgtatgcattattgtttcatagagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="+" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="40647" stop="43163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40947" g_stop="41059" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41060" i_stop="41735" i_length="676">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41736" g_stop="42074" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="452" r_length="339" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42075" i_stop="42839" i_length="765">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42840" g_stop="42863" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="476" r_length="24" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="+" ref_id="SGN-E244429" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244429" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40947" e_stop="41059"/>
          <exon e_start="41736" e_stop="42074"/>
          <exon e_start="42840" e_stop="42863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACATTGTTCATTGTGTAGATAGAAAAAATAAAAAAGAAACCCTTTGACCTCTGAAATTATCTATTTTTATCTTTCTCTCTATTATCCCCGCAATCTCCGCTATTTTCAGGTACTTTTCTTGATTTCTTGATTTTTTTTTATCACTGTATTTTACGCTCACTTTTATCTATCTCCTACTGATTGGAGCTTTAATCGATTGTAAACTGTTATGAACTGAAATGGGTTTCATCGGAATCGGTTGATGCAGAGATTTTCACGGTAAAGTTCTGTTTTTTAGGGATCGATAATGCAATTTCTTGATTTGAATTGTAGAAATCTTGATTTTCTTGATTCTTGATCACTGTTGGTGTTGTTTTGTTGATCATTTTTTGTTTTAATTTTTTCTTGTTTTCGGTTTAGCTGTGTCTTTAACACTGTTGTATGAGAGTTCCCTTTGCTTCTTATTAAAGAAATTAAGATGATGATAACAATTTGAGAATTAAGTTCTCACAAGTGGTGTTTAAGATTAGGAATTAAGAATAATTCCCTGCAAATTTATAGTGTCCATCTATTTATGTTTTTTTATTTTATTGCAATTTGTTGAGTGTTAGGCAGCTGGATTATGCCAAAGAAGCTGTTTATAAATTTGAATTTAATGTGATTTTGCTTGCTCACATATCAAATTTAAACTGTAAGCTTATTTATTTCATTCTTCGGAAGCTGTAATTTTCTTGTGTCACTCGAGGTAGACCATCCATGTATTTCTCCATCAATGCATATATGATAGTTGTTCTTTACTTGTACAGGTGATACACAACAGTTTTTGAAATTTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACGAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATGGTATGCTTTTTCTACTATTGTGTAGTACTATCTTCTTTTTTTCTGCTACCTGTATTTCACCCCATTGCATTACCTTTCAGTACATCCAAATCATAACTGATTTCACTTTTAACTTTTCTGTGAATTGTCAAACTGTATGTCTACTGATCTAATTAAGAGTGCTTCAAATTGAACTTGTCATCATTGTTGCTATCGAGCACATAATTAGTCAATTTTTAGCAACATTTTTGATATCTGATAGGATAAGGTGTCAGTCTGCTATCATGAGAATCTCTCATTTAGGTGTCTTGAGTAGAGAGACTTAGGCTCATCTCTTTGATTTCTAGTGAAACAGAACTGCTCTGAATTTTTAGCTAAAGTTGGTCAATTTTTAGCAACATTTTGATATCTGATGGATAATTCATGACTTTGAATACAAAATTAAGATAATCAAAGGGAACAATAGCCAACAATTATGGTTAAGCAGAAAATACATAACTTTGGGAAGCCTTGTACGTGAGACTCCTCCATGGCATACCAAGAACTTAACTGGCAATAAGATAACTTTATGATTTCTCTGTTACTGTTCATCAAACATTCGTGCATGTACCGTAAAGAATTAATACTGCAACATCATTTCAGTAGCTATTATTTGTAATATGTAAGCACATTATCTTAGAGAAACAATCATCAAGGCTTTCTTCATTCTCTATTGGTAAGTACCAAATGTAATCGCTCTCCTTCATTTGCCATAGAATTTAGAGCACTCCATGTTTTGTTGTGCAGTATGCATCATTGTTTCATAGAGGA</genome_strand>
        <mrna_strand>AAGAACATTTTTCATTGCGTAGATAGAAAAAATAAAAAAGAAACCCTTTGACCTCTGAAATTATCTATTTTTATCTTTCTCTCTATTATCCCCGCAATCTCCGCTATTTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATACACAACAGTTTTTGAAATTTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTATTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACGAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGGGAAGATTATGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCATTATTGTTTCATAGAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E745998" ref_strand="+" ref_description="SGN-E745998 [GI|47105404]">
      <seq>gattgttcattgtgtagatagaaaaaataaaaaagaaaccctttgacctctgaaattatctatttttatctttctctctattatccccgcaatctccgctattttcaggtgatacacaacagtttttgaaattttttctgaaggtcttggtcatgaagggcatcaactcattcagggtttcctgaagagagagggtgcccaattgcattttccgtaagttatattcttacaagttttgcatccataaccatctaatcacaagaatggaggattgacaatgatagccgtggaaggtttttgagttacgaacatttatttgaagacatcatcatgggtgcagtttgttgctgcttgcgagatgaatgtgaagattttgccaatccaaacagctcaatatataggaactgcttatgccttcgatgttttgttcaaaacttcttgcatatgtatgcatcattgtttcatagaggagaacaacatgccattgcttcatccactcaaggtacaacatctttgagctcctcagcatcccttgataactcactatctgatatgtaccgctctcctccaagaccacttccttacgatgctgatccaagatacttccgcttgcaacgtgatgggctagtctcaagaagggagaaaggctcaagtcattcacatgaggaaactgaaccactacgaagaagtgatattgatgatgattctgaatctttgggtatgggcaataaatggaaggagtctgtatgtgaagaaggatcaaaagaatataattccaagtcattgaaattctcaacagctaaaacaactactgagtttactcaaatttgttattcttcagaagatgaagatgtctgcccgacatgtcttgaagaatatactgaagaaaacccaaaaataatgacaaaatgctctcaccacttccacttgggttgcatatatgagtggatggagagaagtgacaactgtccagtatgcggcaaggtgatgctattcaacgagtcgccatgatctttgctcttaaaaagctttagtcgtggatgaaaccagaaggagataagggcaacaactagtaaaccagaaaagctaatcaacgtaaagtcattgtgaatatctgtgcagctaaatgtgtgaccatacatcagtaaaaatgaaattactgttctctctgtttggaactttcgagttcatattgatcatttgatgcaacagaaaacagtttcaaagtacatcatgtaatcttgttttgatttgatgagtgatttctcccagtgtatagcacattgttcctactttcacaagttgaatgttggcacatttgtctgccaaaatcactggatctgatactattttatatctgttccaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="+" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="40653" stop="46718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40952" g_stop="41059" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41060" i_stop="41735" i_length="676">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41736" g_stop="42074" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="447" r_length="339" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42075" i_stop="42839" i_length="765">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42840" g_stop="43266" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="874" r_length="427" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43267" i_stop="43567" i_length="301">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.753" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43568" g_stop="43677" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="875" r_stop="984" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43678" i_stop="46036" i_length="2359">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="46037" g_stop="46419" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="985" r_stop="1367" r_length="383" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1368" polyA_stop="1383"/>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="+" ref_id="SGN-E745998" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1367</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745998" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40952" e_stop="41059"/>
          <exon e_start="41736" e_stop="42074"/>
          <exon e_start="42840" e_stop="43266"/>
          <exon e_start="43568" e_stop="43677"/>
          <exon e_start="46037" e_stop="46419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTGTTCATTGTGTAGATAGAAAAAATAAAAAAGAAACCCTTTGACCTCTGAAATTATCTATTTTTATCTTTCTCTCTATTATCCCCGCAATCTCCGCTATTTTCAGGTACTTTTCTTGATTTCTTGATTTTTTTTTATCACTGTATTTTACGCTCACTTTTATCTATCTCCTACTGATTGGAGCTTTAATCGATTGTAAACTGTTATGAACTGAAATGGGTTTCATCGGAATCGGTTGATGCAGAGATTTTCACGGTAAAGTTCTGTTTTTTAGGGATCGATAATGCAATTTCTTGATTTGAATTGTAGAAATCTTGATTTTCTTGATTCTTGATCACTGTTGGTGTTGTTTTGTTGATCATTTTTTGTTTTAATTTTTTCTTGTTTTCGGTTTAGCTGTGTCTTTAACACTGTTGTATGAGAGTTCCCTTTGCTTCTTATTAAAGAAATTAAGATGATGATAACAATTTGAGAATTAAGTTCTCACAAGTGGTGTTTAAGATTAGGAATTAAGAATAATTCCCTGCAAATTTATAGTGTCCATCTATTTATGTTTTTTTATTTTATTGCAATTTGTTGAGTGTTAGGCAGCTGGATTATGCCAAAGAAGCTGTTTATAAATTTGAATTTAATGTGATTTTGCTTGCTCACATATCAAATTTAAACTGTAAGCTTATTTATTTCATTCTTCGGAAGCTGTAATTTTCTTGTGTCACTCGAGGTAGACCATCCATGTATTTCTCCATCAATGCATATATGATAGTTGTTCTTTACTTGTACAGGTGATACACAACAGTTTTTGAAATTTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACGAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATGGTATGCTTTTTCTACTATTGTGTAGTACTATCTTCTTTTTTTCTGCTACCTGTATTTCACCCCATTGCATTACCTTTCAGTACATCCAAATCATAACTGATTTCACTTTTAACTTTTCTGTGAATTGTCAAACTGTATGTCTACTGATCTAATTAAGAGTGCTTCAAATTGAACTTGTCATCATTGTTGCTATCGAGCACATAATTAGTCAATTTTTAGCAACATTTTTGATATCTGATAGGATAAGGTGTCAGTCTGCTATCATGAGAATCTCTCATTTAGGTGTCTTGAGTAGAGAGACTTAGGCTCATCTCTTTGATTTCTAGTGAAACAGAACTGCTCTGAATTTTTAGCTAAAGTTGGTCAATTTTTAGCAACATTTTGATATCTGATGGATAATTCATGACTTTGAATACAAAATTAAGATAATCAAAGGGAACAATAGCCAACAATTATGGTTAAGCAGAAAATACATAACTTTGGGAAGCCTTGTACGTGAGACTCCTCCATGGCATACCAAGAACTTAACTGGCAATAAGATAACTTTATGATTTCTCTGTTACTGTTCATCAAACATTCGTGCATGTACCGTAAAGAATTAATACTGCAACATCATTTCAGTAGCTATTATTTGTAATATGTAAGCACATTATCTTAGAGAAACAATCATCAAGGCTTTCTTCATTCTCTATTGGTAAGTACCAAATGTAATCGCTCTCCTTCATTTGCCATAGAATTTAGAGCACTCCATGTTTTGTTGTGCAGTATGCATCATTGTTTCATAGAGGAGAACAACATGCCATTGCTTCATCCACTCAAGGTACAACATCTTTGAGCTCCTCAGCATCCCTTGATAACTCACTATCTGATATGTACCGCTCTCCTCCAAGACCACTTCCTTACGATGCTGATCCAAGATACTTCCGCTTGCAACGTGATGGGCTAGTCTCAAGAAGGGAGAAAGGCTCAAGTCATTCACATGAGGAAACTGAACCACTACGAAGAAGTGATATTGATGATGATTCTGAATCTTTGGGTATGGGCAATAAATGGAAGGAGTCTGTATGTGAAGAAGGATCAAAAGAATATAATTCCAAGTCATTGAAATTCTCAACAGCTAAAACAACTACTGAGTTTACTCAAATTTGTTATTCTTCAGAAGATGAAGATGTCTGCCCGACATGTCTTGAAGGTAGGTCAAGCTTTAGGTATTTTGTGATCCATCTTGTTGCACTTCATTACAGAGTAATTTATGTACTCCATCTGCTAAAATAACCATGAGAACACTTTCATATTTCACTTTCTTCCCTCTAGTATCATAGGGTAGACAATATTATTTCAGCATGCAATAGGAAATACACTAATAACTCCTGTAATTTATTTCCCTTGTAAAATAATTTGGTTTCCGTTTTATATTTTCGTTCAGTGTTTACGAAAATTCAGGAATATCTTGACTATTAATTTCCTCATCTTGATGATACTCTCTTTTCCAGAATATACTGAAGAAAACCCAAAAATAATGACAAAATGCTCTCACCACTTCCACTTGGGTTGCATATATGAGTGGATGGAGAGAAGTGACAACTGTCCAGTATGCGGCAAGGTAACTGCGATGTTCTTTATACTATATGCATACTCAATAAATATTCTTTATAACTCTGTGATGAGGTTGAGTTTTCCCTTTGTATGCTACTCCCTCTGCCCCAGTTTATGCGACACCATTTCATGTTTAGTTTGTCCCAACAAGCATGTCACCTTTATATAATTAGAATTAACAACTTTAAAATTCTCATTTTTCTTTCAATGAAATGATTTATAAGCCCACAAATGTCTAAGGTTTGTTTTAGACAACAAATTTCAAAAAGTCTTCTTTCTTTCCTTAAACTTTGTGCTAAGTCAAACAGTGCTACATAAATTGGGATGGAGGGAGTATTGTACTAGAAACGATACCCAGACATTCTGAGGCAAACAATTCACATCTTTATTTTTCTATAGTAGTATGAACTGATGTGGTTAACGATCTACTTGTGCCTTCACAAGCTGCTAAAAACCTCTCAATAGTTGCACTAATTAATTTGACAAAATTACACTTGTGTGTATGATAACAGTTTAAATTGCTCTGCTGTTGATAATTGAAAGAAAGTAGCGAAACTAGTGGGCTTCATTTTCCTTATAGTTATAACTTATAAGTAATAAGTGAGACATGAATAACTCGTGGAGGGGGCGCATATACTCCAGAACGAGCACGAGAAAGAAGCACAAGATCATCAAAGCAATAGATGGGAAGAGATAACACCATTGAGGAGATGGCTGGAAGGAGGCATAGTGCCATCAAGAGTAGCAGGAAACGAATGCGATGTCGTCAGAATGGTCACGGATAAGAGGCGTAACTCCACTAGAATGGTCTCTTAAAAGAGTCCTGATGCTATCAGAGTGGTTGTTGGGAAGAGGCCTGGTGACGCCAGATGGTCGCTAGAAAGTAGAAATGACGTTGGCAGCTAGGCAGTGTAAGGTTGCCTACACTCGATGAAAAACCTTTACAAATGGAATTATTCTACTTGAGTTTCTACCCAGATTATAGGGCCTTGGTTACCACGTGGGAGAATAAACTAAGAGAAGGTTATATCAAGGACTTAAGGATATGTTGAATTTGAGGCACACAACATAATAAATACTCATACTATATGATAGTATGGTGCAAAGTTTAAATTATTAGTTTTAGGAGAGATGGTTAGATTCTTTTTCATAGGGTTAACATTTGGTAAGTTTGTTCTTTAAAGTTCAATCATCTATCCACTGTGTACCGAGGTGCAGGAGGGTGTTAGATATAAAGAAGTCCTATGTATAAGAGGCCGTCTATTATCCACGAAGTATCAAACCATGCACCACTCAGGACGCTTACAAAGAAAAGTTGTCCCTAGATGGTATCAAAGAGATATCTGAAAGTGCCGATAATGGTTTATGGATTATTCCACCCACTGTCTAGGTTGTGGGTAAGAGGTTCCAGCTTGTCTTATGGTATGCTAGTTAAATGGCTGTAATGAAGAAGAGTGAACATTGGCCTGATTGGACTATCCATTCAGGTCTATTCTTGACTAGAAAAATTAGTCCATGCTTGGTTTGTGCCGAAATATTTACCCTGATAGAGAGTCCAACTAGTGGGGGACATGCTATGGCCTACCTAGACTATTTATTAGCAGATTCTTTCCAAATAAAACTCTTTACTGATGCCTGTGGTTCAGACAAGGGATTTGGCTGGGCCTGAGCAAATCTGTAATTTTTGTAGGGTACTTTGTCTCACAAGCCTGTTCTCTGCTCATCCATAAATCTCTGTTCAGATTACACTGCATTTGACCGTGTTCTTGGGGAGCTTTTATGATGGGCTTGAATAACGATGGGTTGGAAGTTTTAAACTGTATTACTGTTACTAAAGATGTTCAAATACGGCTCTGGCAGTATTTAAAACAAAGGTTGCTGAACATTGTTTATTCCGTTCCCTAGCATATATTGGTCTTCAGCCTGATGGATAACTAACAATGAGGACAAAGAAGGAGAAGAAAGCTGTTGTCGGTACTTGTAAGGAGAGCGCTTGCAACTCTTCCATAGAAAGAGAAAATAGTTCAGAAAACACAAAAGGGGTGGCTGAGAAACAAAATCTATTCAAGAATCTGTATAATCGGGTGGATATGACATTTTCCCTCCGATTTCTGTTTATTGGTTGCTTCAACTCAGAAAACATCTAATAAATTAATTGGGGGATGATTATGGTGAGGAGCAGAATATATGAGAGCATGAAAAGTTGTTCAGTCTCTCTAAGAACCCTCACTTCTTTATCAGTGTAGATTTAGACCGTTTCAAAGTGCTGTTGAGTAATTTCTTTTACATTCATACATATGTAGTACATTATAGTATATGATGCATAGTATTTTCTTTTCTTATTTAATGACCTCTTTGCTTTGTAGGTGATGCTATTCAACGAGTCGCCATGATCTTTGCTCTTAAAAAGCTTTAGTCGTGGATGAAACCAGAAGGAGATAAGGGCAACAACTAGTAAACCAGAAAAGCTAATCAACGTAAAGTCATTGTGAATATCTGTGCAGCTAAATGTGTGACCATACATCAGTAAAAATGAAATTACTGTTCTCTCTGTTTGGAACTTTCGAGTTCATATTGATCATTTGATGCAACAGAAAACAGTTTCAAAGTACATCATGTAATCTTGTTTTGATTTGATGAGTGATTTCTCCCAGTGTATAGCACATTGTTCCTACTTTCACAAGTTGAATGTTGGCACATTTGTCTGCCAAAATCACTGGATCTGATACTATTTTATATCTGTTCCAAC</genome_strand>
        <mrna_strand>GATTGTTCATTGTGTAGATAGAAAAAATAAAAAAGAAACCCTTTGACCTCTGAAATTATCTATTTTTATCTTTCTCTCTATTATCCCCGCAATCTCCGCTATTTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATACACAACAGTTTTTGAAATTTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACGAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCATCATTGTTTCATAGAGGAGAACAACATGCCATTGCTTCATCCACTCAAGGTACAACATCTTTGAGCTCCTCAGCATCCCTTGATAACTCACTATCTGATATGTACCGCTCTCCTCCAAGACCACTTCCTTACGATGCTGATCCAAGATACTTCCGCTTGCAACGTGATGGGCTAGTCTCAAGAAGGGAGAAAGGCTCAAGTCATTCACATGAGGAAACTGAACCACTACGAAGAAGTGATATTGATGATGATTCTGAATCTTTGGGTATGGGCAATAAATGGAAGGAGTCTGTATGTGAAGAAGGATCAAAAGAATATAATTCCAAGTCATTGAAATTCTCAACAGCTAAAACAACTACTGAGTTTACTCAAATTTGTTATTCTTCAGAAGATGAAGATGTCTGCCCGACATGTCTTGAAG.............................................................................................................................................................................................................................................................................................................AATATACTGAAGAAAACCCAAAAATAATGACAAAATGCTCTCACCACTTCCACTTGGGTTGCATATATGAGTGGATGGAGAGAAGTGACAACTGTCCAGTATGCGGCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGCTATTCAACGAGTCGCCATGATCTTTGCTCTTAAAAAGCTTTAGTCGTGGATGAAACCAGAAGGAGATAAGGGCAACAACTAGTAAACCAGAAAAGCTAATCAACGTAAAGTCATTGTGAATATCTGTGCAGCTAAATGTGTGACCATACATCAGTAAAAATGAAATTACTGTTCTCTCTGTTTGGAACTTTCGAGTTCATATTGATCATTTGATGCAACAGAAAACAGTTTCAAAGTACATCATGTAATCTTGTTTTGATTTGATGAGTGATTTCTCCCAGTGTATAGCACATTGTTCCTACTTTCACAAGTTGAATGTTGGCACATTTGTCTGCCAAAATCACTGGATCTGATACTATTTTATATCTGTTCCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E243782" ref_strand="+" ref_description="SGN-E243782 [cLED-35-H23]">
      <seq>cattgtgtagatagaaaaaataaaaaagaaaccctttgacctctgaaattatctatttttatctttctctctattatccccgcaatctccgctattttcaggtgatacacaacagtttttgaaattttttctgaaggtcttggtcatgaagggcatcaactcattcagggtttcctgaagagagagggtgcccaattgcattttccgtaagttatattcttacaagttttgcatccataaccatctaatcacaagaatggaggattgacaatgatagccgtggaaggtttttgagttaccaacatttatttgaagacatcatcatgggtgcagtttgttgctgcttgcgagatgaatgtgaagattttgccaatccaaacagctcaatatataggaactgcttatgccttcgatgttttgttcaaaacttcttgcatatgtatgcatcattgtttcatagaggagaacaacatgccattgcttcatccactcaagggacaacatctttgagctcctcagcatcccttgataactcactatctgatatgtacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="+" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="40659" stop="43251"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40959" g_stop="41059" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41060" i_stop="41735" i_length="676">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41736" g_stop="42074" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="440" r_length="339" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42075" i_stop="42839" i_length="765">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42840" g_stop="42951" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="552" r_length="112" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="+" ref_id="SGN-E243782" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40959" e_stop="41059"/>
          <exon e_start="41736" e_stop="42074"/>
          <exon e_start="42840" e_stop="42951"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTGTGTAGATAGAAAAAATAAAAAAGAAACCCTTTGACCTCTGAAATTATCTATTTTTATCTTTCTCTCTATTATCCCCGCAATCTCCGCTATTTTCAGGTACTTTTCTTGATTTCTTGATTTTTTTTTATCACTGTATTTTACGCTCACTTTTATCTATCTCCTACTGATTGGAGCTTTAATCGATTGTAAACTGTTATGAACTGAAATGGGTTTCATCGGAATCGGTTGATGCAGAGATTTTCACGGTAAAGTTCTGTTTTTTAGGGATCGATAATGCAATTTCTTGATTTGAATTGTAGAAATCTTGATTTTCTTGATTCTTGATCACTGTTGGTGTTGTTTTGTTGATCATTTTTTGTTTTAATTTTTTCTTGTTTTCGGTTTAGCTGTGTCTTTAACACTGTTGTATGAGAGTTCCCTTTGCTTCTTATTAAAGAAATTAAGATGATGATAACAATTTGAGAATTAAGTTCTCACAAGTGGTGTTTAAGATTAGGAATTAAGAATAATTCCCTGCAAATTTATAGTGTCCATCTATTTATGTTTTTTTATTTTATTGCAATTTGTTGAGTGTTAGGCAGCTGGATTATGCCAAAGAAGCTGTTTATAAATTTGAATTTAATGTGATTTTGCTTGCTCACATATCAAATTTAAACTGTAAGCTTATTTATTTCATTCTTCGGAAGCTGTAATTTTCTTGTGTCACTCGAGGTAGACCATCCATGTATTTCTCCATCAATGCATATATGATAGTTGTTCTTTACTTGTACAGGTGATACACAACAGTTTTTGAAATTTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACGAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATGGTATGCTTTTTCTACTATTGTGTAGTACTATCTTCTTTTTTTCTGCTACCTGTATTTCACCCCATTGCATTACCTTTCAGTACATCCAAATCATAACTGATTTCACTTTTAACTTTTCTGTGAATTGTCAAACTGTATGTCTACTGATCTAATTAAGAGTGCTTCAAATTGAACTTGTCATCATTGTTGCTATCGAGCACATAATTAGTCAATTTTTAGCAACATTTTTGATATCTGATAGGATAAGGTGTCAGTCTGCTATCATGAGAATCTCTCATTTAGGTGTCTTGAGTAGAGAGACTTAGGCTCATCTCTTTGATTTCTAGTGAAACAGAACTGCTCTGAATTTTTAGCTAAAGTTGGTCAATTTTTAGCAACATTTTGATATCTGATGGATAATTCATGACTTTGAATACAAAATTAAGATAATCAAAGGGAACAATAGCCAACAATTATGGTTAAGCAGAAAATACATAACTTTGGGAAGCCTTGTACGTGAGACTCCTCCATGGCATACCAAGAACTTAACTGGCAATAAGATAACTTTATGATTTCTCTGTTACTGTTCATCAAACATTCGTGCATGTACCGTAAAGAATTAATACTGCAACATCATTTCAGTAGCTATTATTTGTAATATGTAAGCACATTATCTTAGAGAAACAATCATCAAGGCTTTCTTCATTCTCTATTGGTAAGTACCAAATGTAATCGCTCTCCTTCATTTGCCATAGAATTTAGAGCACTCCATGTTTTGTTGTGCAGTATGCATCATTGTTTCATAGAGGAGAACAACATGCCATTGCTTCATCCACTCAAGGTACAACATCTTTGAGCTCCTCAGCATCCCTTGATAACTCACTATCTGATATGTACC</genome_strand>
        <mrna_strand>CATTGTGTAGATAGAAAAAATAAAAAAGAAACCCTTTGACCTCTGAAATTATCTATTTTTATCTTTCTCTCTATTATCCCCGCAATCTCCGCTATTTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATACACAACAGTTTTTGAAATTTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACCAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCATCATTGTTTCATAGAGGAGAACAACATGCCATTGCTTCATCCACTCAAGGGACAACATCTTTGAGCTCCTCAGCATCCCTTGATAACTCACTATCTGATATGTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E243916" ref_strand="+" ref_description="SGN-E243916 [cLED-35-L13]">
      <seq>cattgtgtagatagaaaaaataaaaaagaaaccctttgacctctgaaattatctatttttatctttctctctattatccccgcaatctccgctattttcaggtgatacacaacagtttttgaaattttttctgaaggtcttggtcatgaagggcatcaactcattcagggtttcctgaagagagagggtgcccaattgcattttccgtaagttatattcttacaagttttgcatccataaccatctaatcacaagaatggaggattgacaatgatagccgtggaaggtttttgagttacgaacatttatttgaagacatcatcatgggtgcagtttgttgctgcttgcgagatgaatgtgaagattttgccaatccaaacagctcaatatataggaactgcttatgccttcgatgttttgttcaaaacttcttgcatatgtatgcatcattgtttcatagaggagaacaacatgccattgcttcatccactcaaggtacaacatctttgagctcctcagcatcccttgataactcactatctgatatgtacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="+" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="40659" stop="43251"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40959" g_stop="41059" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41060" i_stop="41735" i_length="676">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41736" g_stop="42074" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="440" r_length="339" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42075" i_stop="42839" i_length="765">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42840" g_stop="42951" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="552" r_length="112" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="+" ref_id="SGN-E243916" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40959" e_stop="41059"/>
          <exon e_start="41736" e_stop="42074"/>
          <exon e_start="42840" e_stop="42951"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTGTGTAGATAGAAAAAATAAAAAAGAAACCCTTTGACCTCTGAAATTATCTATTTTTATCTTTCTCTCTATTATCCCCGCAATCTCCGCTATTTTCAGGTACTTTTCTTGATTTCTTGATTTTTTTTTATCACTGTATTTTACGCTCACTTTTATCTATCTCCTACTGATTGGAGCTTTAATCGATTGTAAACTGTTATGAACTGAAATGGGTTTCATCGGAATCGGTTGATGCAGAGATTTTCACGGTAAAGTTCTGTTTTTTAGGGATCGATAATGCAATTTCTTGATTTGAATTGTAGAAATCTTGATTTTCTTGATTCTTGATCACTGTTGGTGTTGTTTTGTTGATCATTTTTTGTTTTAATTTTTTCTTGTTTTCGGTTTAGCTGTGTCTTTAACACTGTTGTATGAGAGTTCCCTTTGCTTCTTATTAAAGAAATTAAGATGATGATAACAATTTGAGAATTAAGTTCTCACAAGTGGTGTTTAAGATTAGGAATTAAGAATAATTCCCTGCAAATTTATAGTGTCCATCTATTTATGTTTTTTTATTTTATTGCAATTTGTTGAGTGTTAGGCAGCTGGATTATGCCAAAGAAGCTGTTTATAAATTTGAATTTAATGTGATTTTGCTTGCTCACATATCAAATTTAAACTGTAAGCTTATTTATTTCATTCTTCGGAAGCTGTAATTTTCTTGTGTCACTCGAGGTAGACCATCCATGTATTTCTCCATCAATGCATATATGATAGTTGTTCTTTACTTGTACAGGTGATACACAACAGTTTTTGAAATTTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACGAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATGGTATGCTTTTTCTACTATTGTGTAGTACTATCTTCTTTTTTTCTGCTACCTGTATTTCACCCCATTGCATTACCTTTCAGTACATCCAAATCATAACTGATTTCACTTTTAACTTTTCTGTGAATTGTCAAACTGTATGTCTACTGATCTAATTAAGAGTGCTTCAAATTGAACTTGTCATCATTGTTGCTATCGAGCACATAATTAGTCAATTTTTAGCAACATTTTTGATATCTGATAGGATAAGGTGTCAGTCTGCTATCATGAGAATCTCTCATTTAGGTGTCTTGAGTAGAGAGACTTAGGCTCATCTCTTTGATTTCTAGTGAAACAGAACTGCTCTGAATTTTTAGCTAAAGTTGGTCAATTTTTAGCAACATTTTGATATCTGATGGATAATTCATGACTTTGAATACAAAATTAAGATAATCAAAGGGAACAATAGCCAACAATTATGGTTAAGCAGAAAATACATAACTTTGGGAAGCCTTGTACGTGAGACTCCTCCATGGCATACCAAGAACTTAACTGGCAATAAGATAACTTTATGATTTCTCTGTTACTGTTCATCAAACATTCGTGCATGTACCGTAAAGAATTAATACTGCAACATCATTTCAGTAGCTATTATTTGTAATATGTAAGCACATTATCTTAGAGAAACAATCATCAAGGCTTTCTTCATTCTCTATTGGTAAGTACCAAATGTAATCGCTCTCCTTCATTTGCCATAGAATTTAGAGCACTCCATGTTTTGTTGTGCAGTATGCATCATTGTTTCATAGAGGAGAACAACATGCCATTGCTTCATCCACTCAAGGTACAACATCTTTGAGCTCCTCAGCATCCCTTGATAACTCACTATCTGATATGTACC</genome_strand>
        <mrna_strand>CATTGTGTAGATAGAAAAAATAAAAAAGAAACCCTTTGACCTCTGAAATTATCTATTTTTATCTTTCTCTCTATTATCCCCGCAATCTCCGCTATTTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATACACAACAGTTTTTGAAATTTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACGAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCATCATTGTTTCATAGAGGAGAACAACATGCCATTGCTTCATCCACTCAAGGTACAACATCTTTGAGCTCCTCAGCATCCCTTGATAACTCACTATCTGATATGTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E233482" ref_strand="+" ref_description="SGN-E233482 [cLED-9-C11]">
      <seq>cattgtgtagatagaaaaaataaaaaagaaaccctttgacctctgaaattatctatttttatctttctctctattatccccgcaatctccgctattttcaggtgatacacaacagtttttgaaattttttctgaaggtcttggtcatgaagggcatcaactcattcagggtttcctgaagagagagggtgcccaattgcattttccgtaagttatattcttacaagttttgcatccataaccatctaatcacaagaatggaggattgacaatgatagccgtggaaggtttttgagttacgaacatttatttgaagacatcatcatgggtgcagtttgttgctgcttgcgagatgaatgtgaagattttgccaatccaaacagctcaatatataggaactgcttatgccttcgatgttttgttcaaaacttcttgcatatgtatgcatcattgtttcatagaggagaacaacatgccattgcttcatccactcaaggtacaacatctttgagctcctcagcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="+" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="40659" stop="43221"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40959" g_stop="41059" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41060" i_stop="41735" i_length="676">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41736" g_stop="42074" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="440" r_length="339" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42075" i_stop="42839" i_length="765">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42840" g_stop="42921" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="522" r_length="82" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="+" ref_id="SGN-E233482" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233482" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40959" e_stop="41059"/>
          <exon e_start="41736" e_stop="42074"/>
          <exon e_start="42840" e_stop="42921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTGTGTAGATAGAAAAAATAAAAAAGAAACCCTTTGACCTCTGAAATTATCTATTTTTATCTTTCTCTCTATTATCCCCGCAATCTCCGCTATTTTCAGGTACTTTTCTTGATTTCTTGATTTTTTTTTATCACTGTATTTTACGCTCACTTTTATCTATCTCCTACTGATTGGAGCTTTAATCGATTGTAAACTGTTATGAACTGAAATGGGTTTCATCGGAATCGGTTGATGCAGAGATTTTCACGGTAAAGTTCTGTTTTTTAGGGATCGATAATGCAATTTCTTGATTTGAATTGTAGAAATCTTGATTTTCTTGATTCTTGATCACTGTTGGTGTTGTTTTGTTGATCATTTTTTGTTTTAATTTTTTCTTGTTTTCGGTTTAGCTGTGTCTTTAACACTGTTGTATGAGAGTTCCCTTTGCTTCTTATTAAAGAAATTAAGATGATGATAACAATTTGAGAATTAAGTTCTCACAAGTGGTGTTTAAGATTAGGAATTAAGAATAATTCCCTGCAAATTTATAGTGTCCATCTATTTATGTTTTTTTATTTTATTGCAATTTGTTGAGTGTTAGGCAGCTGGATTATGCCAAAGAAGCTGTTTATAAATTTGAATTTAATGTGATTTTGCTTGCTCACATATCAAATTTAAACTGTAAGCTTATTTATTTCATTCTTCGGAAGCTGTAATTTTCTTGTGTCACTCGAGGTAGACCATCCATGTATTTCTCCATCAATGCATATATGATAGTTGTTCTTTACTTGTACAGGTGATACACAACAGTTTTTGAAATTTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACGAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATGGTATGCTTTTTCTACTATTGTGTAGTACTATCTTCTTTTTTTCTGCTACCTGTATTTCACCCCATTGCATTACCTTTCAGTACATCCAAATCATAACTGATTTCACTTTTAACTTTTCTGTGAATTGTCAAACTGTATGTCTACTGATCTAATTAAGAGTGCTTCAAATTGAACTTGTCATCATTGTTGCTATCGAGCACATAATTAGTCAATTTTTAGCAACATTTTTGATATCTGATAGGATAAGGTGTCAGTCTGCTATCATGAGAATCTCTCATTTAGGTGTCTTGAGTAGAGAGACTTAGGCTCATCTCTTTGATTTCTAGTGAAACAGAACTGCTCTGAATTTTTAGCTAAAGTTGGTCAATTTTTAGCAACATTTTGATATCTGATGGATAATTCATGACTTTGAATACAAAATTAAGATAATCAAAGGGAACAATAGCCAACAATTATGGTTAAGCAGAAAATACATAACTTTGGGAAGCCTTGTACGTGAGACTCCTCCATGGCATACCAAGAACTTAACTGGCAATAAGATAACTTTATGATTTCTCTGTTACTGTTCATCAAACATTCGTGCATGTACCGTAAAGAATTAATACTGCAACATCATTTCAGTAGCTATTATTTGTAATATGTAAGCACATTATCTTAGAGAAACAATCATCAAGGCTTTCTTCATTCTCTATTGGTAAGTACCAAATGTAATCGCTCTCCTTCATTTGCCATAGAATTTAGAGCACTCCATGTTTTGTTGTGCAGTATGCATCATTGTTTCATAGAGGAGAACAACATGCCATTGCTTCATCCACTCAAGGTACAACATCTTTGAGCTCCTCAGCAT</genome_strand>
        <mrna_strand>CATTGTGTAGATAGAAAAAATAAAAAAGAAACCCTTTGACCTCTGAAATTATCTATTTTTATCTTTCTCTCTATTATCCCCGCAATCTCCGCTATTTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATACACAACAGTTTTTGAAATTTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACGAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCATCATTGTTTCATAGAGGAGAACAACATGCCATTGCTTCATCCACTCAAGGTACAACATCTTTGAGCTCCTCAGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E241647" ref_strand="+" ref_description="SGN-E241647 [cLED-36-P11]">
      <seq>cattgtgtagatagaaaaaataaaaaagaaaccctttgacctctgaaattatctatttttatctttctctctattatccccgcaatctccgctattttcaggtgatacacaacagtttttgaaattttttctgaaggtcttggtcatgaagggcatcaactcattcagggtttcctgaagagagagggtgcccaattgcattttccgtaagttatattcttacaagttttgcatccataaccatctaatcacaagaatggaggattgacaatgatagccgtggaaggtttttgagttacgaacatttatttgaagacatcatcatgggtgcagtttgttgctgcttgcgagatgaatgtgaagattttgccaatccaaacagctcaatatataggaactgcttatgccttcgatgttttgttcaaaacttcttgcatatgtatgcatcattgtttcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="+" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="40659" stop="42382"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40959" g_stop="41059" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41060" i_stop="41735" i_length="676">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41736" g_stop="42074" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="440" r_length="339" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="+" ref_id="SGN-E241647" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40959" e_stop="41059"/>
          <exon e_start="41736" e_stop="42074"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTGTGTAGATAGAAAAAATAAAAAAGAAACCCTTTGACCTCTGAAATTATCTATTTTTATCTTTCTCTCTATTATCCCCGCAATCTCCGCTATTTTCAGGTACTTTTCTTGATTTCTTGATTTTTTTTTATCACTGTATTTTACGCTCACTTTTATCTATCTCCTACTGATTGGAGCTTTAATCGATTGTAAACTGTTATGAACTGAAATGGGTTTCATCGGAATCGGTTGATGCAGAGATTTTCACGGTAAAGTTCTGTTTTTTAGGGATCGATAATGCAATTTCTTGATTTGAATTGTAGAAATCTTGATTTTCTTGATTCTTGATCACTGTTGGTGTTGTTTTGTTGATCATTTTTTGTTTTAATTTTTTCTTGTTTTCGGTTTAGCTGTGTCTTTAACACTGTTGTATGAGAGTTCCCTTTGCTTCTTATTAAAGAAATTAAGATGATGATAACAATTTGAGAATTAAGTTCTCACAAGTGGTGTTTAAGATTAGGAATTAAGAATAATTCCCTGCAAATTTATAGTGTCCATCTATTTATGTTTTTTTATTTTATTGCAATTTGTTGAGTGTTAGGCAGCTGGATTATGCCAAAGAAGCTGTTTATAAATTTGAATTTAATGTGATTTTGCTTGCTCACATATCAAATTTAAACTGTAAGCTTATTTATTTCATTCTTCGGAAGCTGTAATTTTCTTGTGTCACTCGAGGTAGACCATCCATGTATTTCTCCATCAATGCATATATGATAGTTGTTCTTTACTTGTACAGGTGATACACAACAGTTTTTGAAATTTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACGAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATG</genome_strand>
        <mrna_strand>CATTGTGTAGATAGAAAAAATAAAAAAGAAACCCTTTGACCTCTGAAATTATCTATTTTTATCTTTCTCTCTATTATCCCCGCAATCTCCGCTATTTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATACACAACAGTTTTTGAAATTTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACGAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E391521" ref_strand="+" ref_description="SGN-E391521 [TUS-16-E21]">
      <seq>atagaaaaaataaaaaagaaaccctttgacctctgaaattatctatttttatctttctctctattatccccgcaatctccgctattttcaggtgatacacaacagtttttgaaattttttctgaaggtcttggtcatgaagggcatcaactcattcagggtttcctgaagagagagggtgcccaattgcattttccgtaagttatattcttacaagttttgcatccataaccatctaatcacaagaatggaggattgacaatgatagccgtggaaggtttttgagttacgaacatttatttgaagacatcatcatgggtgcagtttgttgctgcttgcgagatgaatgtgaagattttgccaatccaaacagctcaatatataggaactgcttatgccttcgatgttttgttcaaaacttcttgcatatgtatgcatcattgtttcatagaggagaacaacatgccattgcttcatccactcaaggtacaacatctttgagctcctcagcatcccttgataactcactatctgatatgtaccgctctcctccaagaccacttccttacgatgctgatccaagatacttccgcttgcaacgtgatgggctagtctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="+" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="40669" stop="43324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40969" g_stop="41059" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41060" i_stop="41735" i_length="676">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41736" g_stop="42074" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="430" r_length="339" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42075" i_stop="42839" i_length="765">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42840" g_stop="43024" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="615" r_length="185" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="+" ref_id="SGN-E391521" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40969" e_stop="41059"/>
          <exon e_start="41736" e_stop="42074"/>
          <exon e_start="42840" e_stop="43024"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGAAAAAATAAAAAAGAAACCCTTTGACCTCTGAAATTATCTATTTTTATCTTTCTCTCTATTATCCCCGCAATCTCCGCTATTTTCAGGTACTTTTCTTGATTTCTTGATTTTTTTTTATCACTGTATTTTACGCTCACTTTTATCTATCTCCTACTGATTGGAGCTTTAATCGATTGTAAACTGTTATGAACTGAAATGGGTTTCATCGGAATCGGTTGATGCAGAGATTTTCACGGTAAAGTTCTGTTTTTTAGGGATCGATAATGCAATTTCTTGATTTGAATTGTAGAAATCTTGATTTTCTTGATTCTTGATCACTGTTGGTGTTGTTTTGTTGATCATTTTTTGTTTTAATTTTTTCTTGTTTTCGGTTTAGCTGTGTCTTTAACACTGTTGTATGAGAGTTCCCTTTGCTTCTTATTAAAGAAATTAAGATGATGATAACAATTTGAGAATTAAGTTCTCACAAGTGGTGTTTAAGATTAGGAATTAAGAATAATTCCCTGCAAATTTATAGTGTCCATCTATTTATGTTTTTTTATTTTATTGCAATTTGTTGAGTGTTAGGCAGCTGGATTATGCCAAAGAAGCTGTTTATAAATTTGAATTTAATGTGATTTTGCTTGCTCACATATCAAATTTAAACTGTAAGCTTATTTATTTCATTCTTCGGAAGCTGTAATTTTCTTGTGTCACTCGAGGTAGACCATCCATGTATTTCTCCATCAATGCATATATGATAGTTGTTCTTTACTTGTACAGGTGATACACAACAGTTTTTGAAATTTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACGAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATGGTATGCTTTTTCTACTATTGTGTAGTACTATCTTCTTTTTTTCTGCTACCTGTATTTCACCCCATTGCATTACCTTTCAGTACATCCAAATCATAACTGATTTCACTTTTAACTTTTCTGTGAATTGTCAAACTGTATGTCTACTGATCTAATTAAGAGTGCTTCAAATTGAACTTGTCATCATTGTTGCTATCGAGCACATAATTAGTCAATTTTTAGCAACATTTTTGATATCTGATAGGATAAGGTGTCAGTCTGCTATCATGAGAATCTCTCATTTAGGTGTCTTGAGTAGAGAGACTTAGGCTCATCTCTTTGATTTCTAGTGAAACAGAACTGCTCTGAATTTTTAGCTAAAGTTGGTCAATTTTTAGCAACATTTTGATATCTGATGGATAATTCATGACTTTGAATACAAAATTAAGATAATCAAAGGGAACAATAGCCAACAATTATGGTTAAGCAGAAAATACATAACTTTGGGAAGCCTTGTACGTGAGACTCCTCCATGGCATACCAAGAACTTAACTGGCAATAAGATAACTTTATGATTTCTCTGTTACTGTTCATCAAACATTCGTGCATGTACCGTAAAGAATTAATACTGCAACATCATTTCAGTAGCTATTATTTGTAATATGTAAGCACATTATCTTAGAGAAACAATCATCAAGGCTTTCTTCATTCTCTATTGGTAAGTACCAAATGTAATCGCTCTCCTTCATTTGCCATAGAATTTAGAGCACTCCATGTTTTGTTGTGCAGTATGCATCATTGTTTCATAGAGGAGAACAACATGCCATTGCTTCATCCACTCAAGGTACAACATCTTTGAGCTCCTCAGCATCCCTTGATAACTCACTATCTGATATGTACCGCTCTCCTCCAAGACCACTTCCTTACGATGCTGATCCAAGATACTTCCGCTTGCAACGTGATGGGCTAGTCTC</genome_strand>
        <mrna_strand>ATAGAAAAAATAAAAAAGAAACCCTTTGACCTCTGAAATTATCTATTTTTATCTTTCTCTCTATTATCCCCGCAATCTCCGCTATTTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATACACAACAGTTTTTGAAATTTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACGAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCATCATTGTTTCATAGAGGAGAACAACATGCCATTGCTTCATCCACTCAAGGTACAACATCTTTGAGCTCCTCAGCATCCCTTGATAACTCACTATCTGATATGTACCGCTCTCCTCCAAGACCACTTCCTTACGATGCTGATCCAAGATACTTCCGCTTGCAACGTGATGGGCTAGTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E203796" ref_strand="+" ref_description="SGN-E203796 [cLEC-17-P17]">
      <seq>tagaaaaaataaaaaagaaaccctgggacctctgaaatggtctatttttatctttctctctattatccccgcaatctccgctattttcaggtgatacacaacagtttttgaaattttttctgaaggtcttggtcatgaagggcatcaactcattcagggtttcctgaagagagagggtgcccaattgcattttccgtaagttatattcttacaagttttgcatccataaccatctaatcacaagaatggaggattgacaatgatagccgtggaaggtttttgagttacaaacatttatttgaagacatcatcatgggtgcagtttgttgctgcttgcgagatgaatgtgaagattttgccaatccaaacagctcaatatataggaactgcttatgccttcgatgttttgttcaaaacttcttgcatatgtatgcatcattgtttcatagaggagaacaacatgccattgcttcatccactcaaagtacaacatctttgagctcctcagcatcccttgataactcactatctgatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="+" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="40670" stop="43247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40970" g_stop="41059" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41060" i_stop="41735" i_length="676">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41736" g_stop="42074" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="429" r_length="339" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42075" i_stop="42839" i_length="765">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42840" g_stop="42947" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="537" r_length="108" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="+" ref_id="SGN-E203796" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203796" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40970" e_stop="41059"/>
          <exon e_start="41736" e_stop="42074"/>
          <exon e_start="42840" e_stop="42947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAAAAAATAAAAAAGAAACCCTTTGACCTCTGAAATTATCTATTTTTATCTTTCTCTCTATTATCCCCGCAATCTCCGCTATTTTCAGGTACTTTTCTTGATTTCTTGATTTTTTTTTATCACTGTATTTTACGCTCACTTTTATCTATCTCCTACTGATTGGAGCTTTAATCGATTGTAAACTGTTATGAACTGAAATGGGTTTCATCGGAATCGGTTGATGCAGAGATTTTCACGGTAAAGTTCTGTTTTTTAGGGATCGATAATGCAATTTCTTGATTTGAATTGTAGAAATCTTGATTTTCTTGATTCTTGATCACTGTTGGTGTTGTTTTGTTGATCATTTTTTGTTTTAATTTTTTCTTGTTTTCGGTTTAGCTGTGTCTTTAACACTGTTGTATGAGAGTTCCCTTTGCTTCTTATTAAAGAAATTAAGATGATGATAACAATTTGAGAATTAAGTTCTCACAAGTGGTGTTTAAGATTAGGAATTAAGAATAATTCCCTGCAAATTTATAGTGTCCATCTATTTATGTTTTTTTATTTTATTGCAATTTGTTGAGTGTTAGGCAGCTGGATTATGCCAAAGAAGCTGTTTATAAATTTGAATTTAATGTGATTTTGCTTGCTCACATATCAAATTTAAACTGTAAGCTTATTTATTTCATTCTTCGGAAGCTGTAATTTTCTTGTGTCACTCGAGGTAGACCATCCATGTATTTCTCCATCAATGCATATATGATAGTTGTTCTTTACTTGTACAGGTGATACACAACAGTTTTTGAAATTTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACGAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATGGTATGCTTTTTCTACTATTGTGTAGTACTATCTTCTTTTTTTCTGCTACCTGTATTTCACCCCATTGCATTACCTTTCAGTACATCCAAATCATAACTGATTTCACTTTTAACTTTTCTGTGAATTGTCAAACTGTATGTCTACTGATCTAATTAAGAGTGCTTCAAATTGAACTTGTCATCATTGTTGCTATCGAGCACATAATTAGTCAATTTTTAGCAACATTTTTGATATCTGATAGGATAAGGTGTCAGTCTGCTATCATGAGAATCTCTCATTTAGGTGTCTTGAGTAGAGAGACTTAGGCTCATCTCTTTGATTTCTAGTGAAACAGAACTGCTCTGAATTTTTAGCTAAAGTTGGTCAATTTTTAGCAACATTTTGATATCTGATGGATAATTCATGACTTTGAATACAAAATTAAGATAATCAAAGGGAACAATAGCCAACAATTATGGTTAAGCAGAAAATACATAACTTTGGGAAGCCTTGTACGTGAGACTCCTCCATGGCATACCAAGAACTTAACTGGCAATAAGATAACTTTATGATTTCTCTGTTACTGTTCATCAAACATTCGTGCATGTACCGTAAAGAATTAATACTGCAACATCATTTCAGTAGCTATTATTTGTAATATGTAAGCACATTATCTTAGAGAAACAATCATCAAGGCTTTCTTCATTCTCTATTGGTAAGTACCAAATGTAATCGCTCTCCTTCATTTGCCATAGAATTTAGAGCACTCCATGTTTTGTTGTGCAGTATGCATCATTGTTTCATAGAGGAGAACAACATGCCATTGCTTCATCCACTCAAGGTACAACATCTTTGAGCTCCTCAGCATCCCTTGATAACTCACTATCTGATATG</genome_strand>
        <mrna_strand>TAGAAAAAATAAAAAAGAAACCCTGGGACCTCTGAAATGGTCTATTTTTATCTTTCTCTCTATTATCCCCGCAATCTCCGCTATTTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATACACAACAGTTTTTGAAATTTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACAAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCATCATTGTTTCATAGAGGAGAACAACATGCCATTGCTTCATCCACTCAAAGTACAACATCTTTGAGCTCCTCAGCATCCCTTGATAACTCACTATCTGATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E205236" ref_strand="+" ref_description="SGN-E205236 [cLEC-16-P24]">
      <seq>tagaaaaaataaaaaagaaaccctttgacctctgaaattatctatttttatctttctctctattatccccgcaatctccgctattttcaggtgatacacaacagtttttgaaaatttttctgaaggtcttggtcatgaagggcatcaactcattcaaggtttcctgcagagagagggtgcccaattgcattttccgtaagttatattcttacaagttttgcatccataaccatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="+" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="40670" stop="42180"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40970" g_stop="41059" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41060" i_stop="41735" i_length="676">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41736" g_stop="41880" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="235" r_length="145" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="+" ref_id="SGN-E205236" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>235</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205236" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40970" e_stop="41059"/>
          <exon e_start="41736" e_stop="41880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAAAAAATAAAAAAGAAACCCTTTGACCTCTGAAATTATCTATTTTTATCTTTCTCTCTATTATCCCCGCAATCTCCGCTATTTTCAGGTACTTTTCTTGATTTCTTGATTTTTTTTTATCACTGTATTTTACGCTCACTTTTATCTATCTCCTACTGATTGGAGCTTTAATCGATTGTAAACTGTTATGAACTGAAATGGGTTTCATCGGAATCGGTTGATGCAGAGATTTTCACGGTAAAGTTCTGTTTTTTAGGGATCGATAATGCAATTTCTTGATTTGAATTGTAGAAATCTTGATTTTCTTGATTCTTGATCACTGTTGGTGTTGTTTTGTTGATCATTTTTTGTTTTAATTTTTTCTTGTTTTCGGTTTAGCTGTGTCTTTAACACTGTTGTATGAGAGTTCCCTTTGCTTCTTATTAAAGAAATTAAGATGATGATAACAATTTGAGAATTAAGTTCTCACAAGTGGTGTTTAAGATTAGGAATTAAGAATAATTCCCTGCAAATTTATAGTGTCCATCTATTTATGTTTTTTTATTTTATTGCAATTTGTTGAGTGTTAGGCAGCTGGATTATGCCAAAGAAGCTGTTTATAAATTTGAATTTAATGTGATTTTGCTTGCTCACATATCAAATTTAAACTGTAAGCTTATTTATTTCATTCTTCGGAAGCTGTAATTTTCTTGTGTCACTCGAGGTAGACCATCCATGTATTTCTCCATCAATGCATATATGATAGTTGTTCTTTACTTGTACAGGTGATACACAACAGTTTTTGAAATTTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCT</genome_strand>
        <mrna_strand>TAGAAAAAATAAAAAAGAAACCCTTTGACCTCTGAAATTATCTATTTTTATCTTTCTCTCTATTATCCCCGCAATCTCCGCTATTTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATACACAACAGTTTTTGAAAATTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAAGGTTTCCTGCAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E201837" ref_strand="+" ref_description="SGN-E201837 [cLEC-11-N14]">
      <seq>aattatctatttttatctttctctctattatccccgcaatctccgctattttcaggtgatacacaacagtttttgaaattttttctgaaggtcttggtcatgaagggcatcaactcattcagggtttcctgaagagagagggtgcccaattgcattttccgtaagttatattcttacaagttttgcatccataaccatctaatcacaagaatggaggattgacaatgatagccgtggaaggtttttgagttacgaacatttatttgaagacatcatcatgggtgcagtttgttgctgcttgcgagatgaatgtgaagattttgccaatccaaacagctcaatatataggaactgcttatgccttcgatgttttgttcaaaacttcttgcatatgtatgcatcattgtttcatagaggagaacaacatgcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="+" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="40705" stop="43176"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41005" g_stop="41059" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41060" i_stop="41735" i_length="676">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41736" g_stop="42074" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="394" r_length="339" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42075" i_stop="42839" i_length="765">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42840" g_stop="42876" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="431" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="+" ref_id="SGN-E201837" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201837" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41005" e_stop="41059"/>
          <exon e_start="41736" e_stop="42074"/>
          <exon e_start="42840" e_stop="42876"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTATCTATTTTTATCTTTCTCTCTATTATCCCCGCAATCTCCGCTATTTTCAGGTACTTTTCTTGATTTCTTGATTTTTTTTTATCACTGTATTTTACGCTCACTTTTATCTATCTCCTACTGATTGGAGCTTTAATCGATTGTAAACTGTTATGAACTGAAATGGGTTTCATCGGAATCGGTTGATGCAGAGATTTTCACGGTAAAGTTCTGTTTTTTAGGGATCGATAATGCAATTTCTTGATTTGAATTGTAGAAATCTTGATTTTCTTGATTCTTGATCACTGTTGGTGTTGTTTTGTTGATCATTTTTTGTTTTAATTTTTTCTTGTTTTCGGTTTAGCTGTGTCTTTAACACTGTTGTATGAGAGTTCCCTTTGCTTCTTATTAAAGAAATTAAGATGATGATAACAATTTGAGAATTAAGTTCTCACAAGTGGTGTTTAAGATTAGGAATTAAGAATAATTCCCTGCAAATTTATAGTGTCCATCTATTTATGTTTTTTTATTTTATTGCAATTTGTTGAGTGTTAGGCAGCTGGATTATGCCAAAGAAGCTGTTTATAAATTTGAATTTAATGTGATTTTGCTTGCTCACATATCAAATTTAAACTGTAAGCTTATTTATTTCATTCTTCGGAAGCTGTAATTTTCTTGTGTCACTCGAGGTAGACCATCCATGTATTTCTCCATCAATGCATATATGATAGTTGTTCTTTACTTGTACAGGTGATACACAACAGTTTTTGAAATTTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACGAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATGGTATGCTTTTTCTACTATTGTGTAGTACTATCTTCTTTTTTTCTGCTACCTGTATTTCACCCCATTGCATTACCTTTCAGTACATCCAAATCATAACTGATTTCACTTTTAACTTTTCTGTGAATTGTCAAACTGTATGTCTACTGATCTAATTAAGAGTGCTTCAAATTGAACTTGTCATCATTGTTGCTATCGAGCACATAATTAGTCAATTTTTAGCAACATTTTTGATATCTGATAGGATAAGGTGTCAGTCTGCTATCATGAGAATCTCTCATTTAGGTGTCTTGAGTAGAGAGACTTAGGCTCATCTCTTTGATTTCTAGTGAAACAGAACTGCTCTGAATTTTTAGCTAAAGTTGGTCAATTTTTAGCAACATTTTGATATCTGATGGATAATTCATGACTTTGAATACAAAATTAAGATAATCAAAGGGAACAATAGCCAACAATTATGGTTAAGCAGAAAATACATAACTTTGGGAAGCCTTGTACGTGAGACTCCTCCATGGCATACCAAGAACTTAACTGGCAATAAGATAACTTTATGATTTCTCTGTTACTGTTCATCAAACATTCGTGCATGTACCGTAAAGAATTAATACTGCAACATCATTTCAGTAGCTATTATTTGTAATATGTAAGCACATTATCTTAGAGAAACAATCATCAAGGCTTTCTTCATTCTCTATTGGTAAGTACCAAATGTAATCGCTCTCCTTCATTTGCCATAGAATTTAGAGCACTCCATGTTTTGTTGTGCAGTATGCATCATTGTTTCATAGAGGAGAACAACATGCCA</genome_strand>
        <mrna_strand>AATTATCTATTTTTATCTTTCTCTCTATTATCCCCGCAATCTCCGCTATTTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATACACAACAGTTTTTGAAATTTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACGAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCATCATTGTTTCATAGAGGAGAACAACATGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E542546" ref_strand="+" ref_description="SGN-E542546 [TUS-63-O15](-)">
      <seq>attagatggttatggatgcaaaacttgtaagaatataacttacggaaaatgcaattgggcaccctctctcttcaggaaaccctgaatgagttgatgcccttcatgaccaagaccttcagaaaaaatttcaaaaactgttgtgtatcacctgtacaagtaaagaacaactatcatatatgcattgatggagaaatacatggatggtctacctcgagtgacacaagaaaattacagcttccgaagaatgaaataaataagcttacagtttaaatttgatatgtgagcaagcaaaatcacattaaattcaaatttataaacagcttctttggcataatccagctgcctaacactcaacaaattgcaataaaataaaaaaacataaatagatggacactataaatttgcagggaattattcttaattcctaatcttaaacaccacttgtgagaacttaattctcaaattgttatcatcatcttaatttctttaataagaagcaaagggaactctcatacaacagtgttaaagacacagctaaaccgaaaacaagaaaaaattaaaacaaaaaatgatcaacaaaacaacaccaacagtgatcaagaatcaagaaaatcaagatttctacaattcaaatcaagaaattgcattatcgatccctaaaaaacagaactttaccgtgaaaatctctgcatcaaccgattccgatgaaacccatttcagttcataacagtttacaatcgattaaagctccaatcagtaggagatagataaaagtgagcgtaaaatacagtgataaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="42183" stop="40775"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41883" g_stop="41082" g_length="802"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="802" r_length="802" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E542546" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>802</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542546" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41883" e_stop="41082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAGATGGTTATGGATGCAAAACTTGTAAGAATATAACTTACGGAAAATGCAATTGGGCACCCTCTCTCTTCAGGAAACCCTGAATGAGTTGATGCCCTTCATGACCAAGACCTTCAGAAAAAATTTCAAAAACTGTTGTGTATCACCTGTACAAGTAAAGAACAACTATCATATATGCATTGATGGAGAAATACATGGATGGTCTACCTCGAGTGACACAAGAAAATTACAGCTTCCGAAGAATGAAATAAATAAGCTTACAGTTTAAATTTGATATGTGAGCAAGCAAAATCACATTAAATTCAAATTTATAAACAGCTTCTTTGGCATAATCCAGCTGCCTAACACTCAACAAATTGCAATAAAATAAAAAAACATAAATAGATGGACACTATAAATTTGCAGGGAATTATTCTTAATTCCTAATCTTAAACACCACTTGTGAGAACTTAATTCTCAAATTGTTATCATCATCTTAATTTCTTTAATAAGAAGCAAAGGGAACTCTCATACAACAGTGTTAAAGACACAGCTAAACCGAAAACAAGAAAAAATTAAAACAAAAAATGATCAACAAAACAACACCAACAGTGATCAAGAATCAAGAAAATCAAGATTTCTACAATTCAAATCAAGAAATTGCATTATCGATCCCTAAAAAACAGAACTTTACCGTGAAAATCTCTGCATCAACCGATTCCGATGAAACCCATTTCAGTTCATAACAGTTTACAATCGATTAAAGCTCCAATCAGTAGGAGATAGATAAAAGTGAGCGTAAAATACAGTGATAAAAAAAA</genome_strand>
        <mrna_strand>ATTAGATGGTTATGGATGCAAAACTTGTAAGAATATAACTTACGGAAAATGCAATTGGGCACCCTCTCTCTTCAGGAAACCCTGAATGAGTTGATGCCCTTCATGACCAAGACCTTCAGAAAAAATTTCAAAAACTGTTGTGTATCACCTGTACAAGTAAAGAACAACTATCATATATGCATTGATGGAGAAATACATGGATGGTCTACCTCGAGTGACACAAGAAAATTACAGCTTCCGAAGAATGAAATAAATAAGCTTACAGTTTAAATTTGATATGTGAGCAAGCAAAATCACATTAAATTCAAATTTATAAACAGCTTCTTTGGCATAATCCAGCTGCCTAACACTCAACAAATTGCAATAAAATAAAAAAACATAAATAGATGGACACTATAAATTTGCAGGGAATTATTCTTAATTCCTAATCTTAAACACCACTTGTGAGAACTTAATTCTCAAATTGTTATCATCATCTTAATTTCTTTAATAAGAAGCAAAGGGAACTCTCATACAACAGTGTTAAAGACACAGCTAAACCGAAAACAAGAAAAAATTAAAACAAAAAATGATCAACAAAACAACACCAACAGTGATCAAGAATCAAGAAAATCAAGATTTCTACAATTCAAATCAAGAAATTGCATTATCGATCCCTAAAAAACAGAACTTTACCGTGAAAATCTCTGCATCAACCGATTCCGATGAAACCCATTTCAGTTCATAACAGTTTACAATCGATTAAAGCTCCAATCAGTAGGAGATAGATAAAAGTGAGCGTAAAATACAGTGATAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E703406" ref_strand="+" ref_description="SGN-E703406 [FA21BF06]">
      <seq>atcgattgtaaactgttatgaactgaaatgggtttcatcggaatcggttgatgcagagattttcacggtgatacacaacagtttttgaaatttttctgaaggtcttggtcatgaagggcatcaactcattcagggtttcctgaagagagagggtgcccaattgcattttccgtaagttatattcttacaagttttgcatccataaccatctaatcacaagaatggaggattgacaatgatagccgtggaaggtttttgagttacgaacatttatttgaagacatcatcatgggtgcagtttgttgctgcttgcgagatgaatgtgaagattttgccaatccaaacagctcaatatataggaactgcttatgccttcgatgttttgttcaaaacttcttgcatatgtatgcatcattgtttcatagaggagaacaacatgccattgcttcatccactcaaggtacaacatctttgagctcctcagcatcccttgataactcactatctgatatgtaccgctctcctccaagaccacttccttacgatgctgatccaagatacttccgcttgcaacgtgatgggctagtctcaagaagggagaaaggctcaagtcattcacatgaggaaactgaaccactacgaagaagtgatattgatgatgattctgaatctttgggtatgggcaataaatggaaggagtctgtatgtgaagaaggatcaaaagaatataattccaagtcattgaaattctcaacagctaaaacaactactgagtttactcaaatttgttattcttcagaagatgaagatgtctgcccgacatgtcttgaagaatatactgaagaaaaccaaaaataatgacaaaatgctctcaccacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="+" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="40842" stop="43917"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41142" g_stop="41208" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41209" i_stop="41735" i_length="527">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41736" g_stop="42074" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="405" r_length="338" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42075" i_stop="42839" i_length="765">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42840" g_stop="43266" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="832" r_length="427" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43267" i_stop="43567" i_length="301">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.753" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43568" g_stop="43617" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="833" r_stop="881" r_length="49" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="+" ref_id="SGN-E703406" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>883</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41142" e_stop="41208"/>
          <exon e_start="41736" e_stop="42074"/>
          <exon e_start="42840" e_stop="43266"/>
          <exon e_start="43568" e_stop="43617"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGATTGTAAACTGTTATGAACTGAAATGGGTTTCATCGGAATCGGTTGATGCAGAGATTTTCACGGTAAAGTTCTGTTTTTTAGGGATCGATAATGCAATTTCTTGATTTGAATTGTAGAAATCTTGATTTTCTTGATTCTTGATCACTGTTGGTGTTGTTTTGTTGATCATTTTTTGTTTTAATTTTTTCTTGTTTTCGGTTTAGCTGTGTCTTTAACACTGTTGTATGAGAGTTCCCTTTGCTTCTTATTAAAGAAATTAAGATGATGATAACAATTTGAGAATTAAGTTCTCACAAGTGGTGTTTAAGATTAGGAATTAAGAATAATTCCCTGCAAATTTATAGTGTCCATCTATTTATGTTTTTTTATTTTATTGCAATTTGTTGAGTGTTAGGCAGCTGGATTATGCCAAAGAAGCTGTTTATAAATTTGAATTTAATGTGATTTTGCTTGCTCACATATCAAATTTAAACTGTAAGCTTATTTATTTCATTCTTCGGAAGCTGTAATTTTCTTGTGTCACTCGAGGTAGACCATCCATGTATTTCTCCATCAATGCATATATGATAGTTGTTCTTTACTTGTACAGGTGATACACAACAGTTTTTGAAATTTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACGAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATGGTATGCTTTTTCTACTATTGTGTAGTACTATCTTCTTTTTTTCTGCTACCTGTATTTCACCCCATTGCATTACCTTTCAGTACATCCAAATCATAACTGATTTCACTTTTAACTTTTCTGTGAATTGTCAAACTGTATGTCTACTGATCTAATTAAGAGTGCTTCAAATTGAACTTGTCATCATTGTTGCTATCGAGCACATAATTAGTCAATTTTTAGCAACATTTTTGATATCTGATAGGATAAGGTGTCAGTCTGCTATCATGAGAATCTCTCATTTAGGTGTCTTGAGTAGAGAGACTTAGGCTCATCTCTTTGATTTCTAGTGAAACAGAACTGCTCTGAATTTTTAGCTAAAGTTGGTCAATTTTTAGCAACATTTTGATATCTGATGGATAATTCATGACTTTGAATACAAAATTAAGATAATCAAAGGGAACAATAGCCAACAATTATGGTTAAGCAGAAAATACATAACTTTGGGAAGCCTTGTACGTGAGACTCCTCCATGGCATACCAAGAACTTAACTGGCAATAAGATAACTTTATGATTTCTCTGTTACTGTTCATCAAACATTCGTGCATGTACCGTAAAGAATTAATACTGCAACATCATTTCAGTAGCTATTATTTGTAATATGTAAGCACATTATCTTAGAGAAACAATCATCAAGGCTTTCTTCATTCTCTATTGGTAAGTACCAAATGTAATCGCTCTCCTTCATTTGCCATAGAATTTAGAGCACTCCATGTTTTGTTGTGCAGTATGCATCATTGTTTCATAGAGGAGAACAACATGCCATTGCTTCATCCACTCAAGGTACAACATCTTTGAGCTCCTCAGCATCCCTTGATAACTCACTATCTGATATGTACCGCTCTCCTCCAAGACCACTTCCTTACGATGCTGATCCAAGATACTTCCGCTTGCAACGTGATGGGCTAGTCTCAAGAAGGGAGAAAGGCTCAAGTCATTCACATGAGGAAACTGAACCACTACGAAGAAGTGATATTGATGATGATTCTGAATCTTTGGGTATGGGCAATAAATGGAAGGAGTCTGTATGTGAAGAAGGATCAAAAGAATATAATTCCAAGTCATTGAAATTCTCAACAGCTAAAACAACTACTGAGTTTACTCAAATTTGTTATTCTTCAGAAGATGAAGATGTCTGCCCGACATGTCTTGAAGGTAGGTCAAGCTTTAGGTATTTTGTGATCCATCTTGTTGCACTTCATTACAGAGTAATTTATGTACTCCATCTGCTAAAATAACCATGAGAACACTTTCATATTTCACTTTCTTCCCTCTAGTATCATAGGGTAGACAATATTATTTCAGCATGCAATAGGAAATACACTAATAACTCCTGTAATTTATTTCCCTTGTAAAATAATTTGGTTTCCGTTTTATATTTTCGTTCAGTGTTTACGAAAATTCAGGAATATCTTGACTATTAATTTCCTCATCTTGATGATACTCTCTTTTCCAGAATATACTGAAGAAAACCCAAAAATAATGACAAAATGCTCTCACCACTTC</genome_strand>
        <mrna_strand>ATCGATTGTAAACTGTTATGAACTGAAATGGGTTTCATCGGAATCGGTTGATGCAGAGATTTTCACG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATACACAACAGTTTTTGAAA-TTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACGAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCATCATTGTTTCATAGAGGAGAACAACATGCCATTGCTTCATCCACTCAAGGTACAACATCTTTGAGCTCCTCAGCATCCCTTGATAACTCACTATCTGATATGTACCGCTCTCCTCCAAGACCACTTCCTTACGATGCTGATCCAAGATACTTCCGCTTGCAACGTGATGGGCTAGTCTCAAGAAGGGAGAAAGGCTCAAGTCATTCACATGAGGAAACTGAACCACTACGAAGAAGTGATATTGATGATGATTCTGAATCTTTGGGTATGGGCAATAAATGGAAGGAGTCTGTATGTGAAGAAGGATCAAAAGAATATAATTCCAAGTCATTGAAATTCTCAACAGCTAAAACAACTACTGAGTTTACTCAAATTTGTTATTCTTCAGAAGATGAAGATGTCTGCCCGACATGTCTTGAAG.............................................................................................................................................................................................................................................................................................................AATATACTGAAGAAAA-CCAAAAATAATGACAAAATGCTCTCACCACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E207320" ref_strand="+" ref_description="SGN-E207320 [cLEC-30-B18]">
      <seq>ttttcaggtgatacacaacagtttttgaaattttttctgaaggtcttggtcatgaagggcatcaactcattcagggtttcctgaagagagagggtgcccaattgcattttccgtaagttatattcttacaagttttgcatccataaccatctaatcacaagaatggaggattgacaatgatagccgtggaaggtttttgagttacgaacatttatttgaagacatcatcatgggtgcagtttgttgctgcttgcgagatgaatgtgaagattttgccaatccaaacagctcaatatataggaactgcttatgccttcgatgttttgttcaaaacttcttgcatatgtatgcatcattgtttcatagaggagaacaacatgccattgcttcatccactcaaggtacaacatctttgagctcctcagcatcccttgataactcactatctgatatgtaccgctctcctccaagaccacttccttacgatgctgatccaagatacttccgcttgcaacgtgatgggctagtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="+" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="41429" stop="43323"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41729" g_stop="42074" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="346" r_length="346" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42075" i_stop="42839" i_length="765">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42840" g_stop="43023" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="530" r_length="184" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="+" ref_id="SGN-E207320" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41729" e_stop="42074"/>
          <exon e_start="42840" e_stop="43023"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTACAGGTGATACACAACAGTTTTTGAAATTTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACGAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATGGTATGCTTTTTCTACTATTGTGTAGTACTATCTTCTTTTTTTCTGCTACCTGTATTTCACCCCATTGCATTACCTTTCAGTACATCCAAATCATAACTGATTTCACTTTTAACTTTTCTGTGAATTGTCAAACTGTATGTCTACTGATCTAATTAAGAGTGCTTCAAATTGAACTTGTCATCATTGTTGCTATCGAGCACATAATTAGTCAATTTTTAGCAACATTTTTGATATCTGATAGGATAAGGTGTCAGTCTGCTATCATGAGAATCTCTCATTTAGGTGTCTTGAGTAGAGAGACTTAGGCTCATCTCTTTGATTTCTAGTGAAACAGAACTGCTCTGAATTTTTAGCTAAAGTTGGTCAATTTTTAGCAACATTTTGATATCTGATGGATAATTCATGACTTTGAATACAAAATTAAGATAATCAAAGGGAACAATAGCCAACAATTATGGTTAAGCAGAAAATACATAACTTTGGGAAGCCTTGTACGTGAGACTCCTCCATGGCATACCAAGAACTTAACTGGCAATAAGATAACTTTATGATTTCTCTGTTACTGTTCATCAAACATTCGTGCATGTACCGTAAAGAATTAATACTGCAACATCATTTCAGTAGCTATTATTTGTAATATGTAAGCACATTATCTTAGAGAAACAATCATCAAGGCTTTCTTCATTCTCTATTGGTAAGTACCAAATGTAATCGCTCTCCTTCATTTGCCATAGAATTTAGAGCACTCCATGTTTTGTTGTGCAGTATGCATCATTGTTTCATAGAGGAGAACAACATGCCATTGCTTCATCCACTCAAGGTACAACATCTTTGAGCTCCTCAGCATCCCTTGATAACTCACTATCTGATATGTACCGCTCTCCTCCAAGACCACTTCCTTACGATGCTGATCCAAGATACTTCCGCTTGCAACGTGATGGGCTAGTCT</genome_strand>
        <mrna_strand>TTTTCAGGTGATACACAACAGTTTTTGAAATTTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACGAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCATCATTGTTTCATAGAGGAGAACAACATGCCATTGCTTCATCCACTCAAGGTACAACATCTTTGAGCTCCTCAGCATCCCTTGATAACTCACTATCTGATATGTACCGCTCTCCTCCAAGACCACTTCCTTACGATGCTGATCCAAGATACTTCCGCTTGCAACGTGATGGGCTAGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E613990" ref_strand="+" ref_description="SGN-E613990 [63771]">
      <seq>tttcaggtgacacacagcaattttaaaaagaatttattaaggtcttgatcatgaagggcatcaactcattcagagtgtcctgaagagagagggtgcccaattgcattttccgtagttcttactgtgacaagttttgcatccataaccatccaatcacaagaattgaggattgccaatgatagccttgaaaggtttttgagttcggacatttgattgaagacagcatcatgggtgcagtttgttgctgcttgcgagatgaatgtgaagattttgccaatccaaacagctcaatatataggaactgcatatgccttcgatgttttgttcaaaacttcttgcacatgtatgcatcattgtttcatagaggagaacaacatgccattgcttcatccactcaaggtacaacatctttgagttcctcagcatcccttgataactcactatctgatatgtaccgctctcctccaagaccacttccttacgatgccgatccaagatacttccgcttgcaacgcgatgggctagtctcaagaagggagaaaggctcaagtcactcgcatgaggaaactgaaccactgcgaagaagtgatattgatgatgattctgaatctttgggtacgggtaataaatggaaggagtctgtatgtgaagaaggatcaaaagaacataattccaagtcattgaaactctcaaacagtaaacaactactgaattactcaaatttgttattcttcagaagatgaagatgtcttgccctacatgtcttgaaagaaatatactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="+" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="41456" stop="43569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41730" g_stop="42074" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="344" r_length="344" r_score="0.901"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42075" i_stop="42839" i_length="765">
            <donor d_prob="0.921" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42840" g_stop="43266" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="770" r_length="426" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="+" ref_id="SGN-E613990" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E613990" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41730" e_stop="42074"/>
          <exon e_start="42840" e_stop="43266"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACAGGTGATACACAACAGTTTTTGAAATTTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACGAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATGGTATGCTTTTTCTACTATTGTGTAGTACTATCTTCTTTTTTTCTGCTACCTGTATTTCACCCCATTGCATTACCTTTCAGTACATCCAAATCATAACTGATTTCACTTTTAACTTTTCTGTGAATTGTCAAACTGTATGTCTACTGATCTAATTAAGAGTGCTTCAAATTGAACTTGTCATCATTGTTGCTATCGAGCACATAATTAGTCAATTTTTAGCAACATTTTTGATATCTGATAGGATAAGGTGTCAGTCTGCTATCATGAGAATCTCTCATTTAGGTGTCTTGAGTAGAGAGACTTAGGCTCATCTCTTTGATTTCTAGTGAAACAGAACTGCTCTGAATTTTTAGCTAAAGTTGGTCAATTTTTAGCAACATTTTGATATCTGATGGATAATTCATGACTTTGAATACAAAATTAAGATAATCAAAGGGAACAATAGCCAACAATTATGGTTAAGCAGAAAATACATAACTTTGGGAAGCCTTGTACGTGAGACTCCTCCATGGCATACCAAGAACTTAACTGGCAATAAGATAACTTTATGATTTCTCTGTTACTGTTCATCAAACATTCGTGCATGTACCGTAAAGAATTAATACTGCAACATCATTTCAGTAGCTATTATTTGTAATATGTAAGCACATTATCTTAGAGAAACAATCATCAAGGCTTTCTTCATTCTCTATTGGTAAGTACCAAATGTAATCGCTCTCCTTCATTTGCCATAGAATTTAGAGCACTCCATGTTTTGTTGTGCAGTATGCATCATTGTTTCATAGAGGAGAACAACATGCCATTGCTTCATCCACTCAAGGTACAACATCTTTGAGCTCCTCAGCATCCCTTGATAACTCACTATCTGATATGTACCGCTCTCCTCCAAGACCACTTCCTTACGATGCTGATCCAAGATACTTCCGCTTGCAACGTGATGGGCTAGTCTCAAGAAGGGAGAAAGGCTCAAGTCATTCACATGAGGAAACTGAACCACTACGAAGAAGTGATATTGATGATGATTCTGAATCTTTGGGTATGGGCAATAAATGGAAGGAGTCTGTATGTGAAGAAGGATCAAAAGAATATAATTCCAAGTCATTGAAATTCTC-AACAGCTAAAACAACTACTGAGTTTACTCAAATTTGTTATTCTTCAGAAGATGAAGATGTC-TGCCCGACATGTCTTGAAG</genome_strand>
        <mrna_strand>TTTCAGGTGACACACAGCAATTTTAAAAAGAATTTATTAAGGTCTTGATCATGAAGGGCATCAACTCATTCAGAGTGTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAGTTCTTACTGTGACAAGTTTTGCATCCATAACCATCCAATCACAAGAATTGAGGATTGCCAATGATAGCCTTGAAAGGTTTTTGAGTT-CGGACATTTGATTGAAGACAGCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCATATGCCTTCGATGTTTTGTTCAAAACTTCTTGCACATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCATCATTGTTTCATAGAGGAGAACAACATGCCATTGCTTCATCCACTCAAGGTACAACATCTTTGAGTTCCTCAGCATCCCTTGATAACTCACTATCTGATATGTACCGCTCTCCTCCAAGACCACTTCCTTACGATGCCGATCCAAGATACTTCCGCTTGCAACGCGATGGGCTAGTCTCAAGAAGGGAGAAAGGCTCAAGTCACTCGCATGAGGAAACTGAACCACTGCGAAGAAGTGATATTGATGATGATTCTGAATCTTTGGGTACGGGTAATAAATGGAAGGAGTCTGTATGTGAAGAAGGATCAAAAGAACATAATTCCAAGTCATTGAAACTCTCAAACAG-T-AAACAACTACTGA-ATTACTCAAATTTGTTATTCTTCAGAAGATGAAGATGTCTTGCCCTACATGTCTTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E689772" ref_strand="+" ref_description="SGN-E689772 [LH_Ea01M10]">
      <seq>ccatttatcactctttttctgaaggtcttggtcatgaaggccttcaactcattcagggtttcctgaagagagagggtgcccaattgcattttccgtaagttatattcttacaagttttgcatccataaccatctaatcacaagaatggaggattgccaatgatagccgtggaaggtttttgagttacggacatttatttgaagacatcatcatgggtgcagtttgttgctgcttgcgagatgaatgcgaagattttgccaatccaaacagctcaatatataggaactgcttatgccttcgatgttttgttcaaaacttcttgcacatgtatgcatcattgtttcatacaggagaacaacatgccattgcttcatccactcaaggtacaacatctttgagctcctcagcatcccttgataactcactatctgatatgtaccgctctcctccaagaccacttccttacgatgctgatccaagatacttccgcttgcaacgtgatgggctagtctcaagaagggagaaaggctcaagccactcgcatgaggaaactgaaccactgcgaagaagtgatattgatgatgattctgaatctttgggtacgggcaataaatggaaggagtctgtatgtgaagaaggatcaaaagaatataattcccagtcattgaaattctcaacagctaaaacaactactgagtttactcaaatttgtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="+" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="41457" stop="43525"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41747" g_stop="42074" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42075" i_stop="42839" i_length="765">
            <donor d_prob="0.921" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42840" g_stop="43225" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="714" r_length="386" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="+" ref_id="SGN-E689772" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41747" e_stop="42074"/>
          <exon e_start="42840" e_stop="43225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTTTTTGAAATTTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACGAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATGGTATGCTTTTTCTACTATTGTGTAGTACTATCTTCTTTTTTTCTGCTACCTGTATTTCACCCCATTGCATTACCTTTCAGTACATCCAAATCATAACTGATTTCACTTTTAACTTTTCTGTGAATTGTCAAACTGTATGTCTACTGATCTAATTAAGAGTGCTTCAAATTGAACTTGTCATCATTGTTGCTATCGAGCACATAATTAGTCAATTTTTAGCAACATTTTTGATATCTGATAGGATAAGGTGTCAGTCTGCTATCATGAGAATCTCTCATTTAGGTGTCTTGAGTAGAGAGACTTAGGCTCATCTCTTTGATTTCTAGTGAAACAGAACTGCTCTGAATTTTTAGCTAAAGTTGGTCAATTTTTAGCAACATTTTGATATCTGATGGATAATTCATGACTTTGAATACAAAATTAAGATAATCAAAGGGAACAATAGCCAACAATTATGGTTAAGCAGAAAATACATAACTTTGGGAAGCCTTGTACGTGAGACTCCTCCATGGCATACCAAGAACTTAACTGGCAATAAGATAACTTTATGATTTCTCTGTTACTGTTCATCAAACATTCGTGCATGTACCGTAAAGAATTAATACTGCAACATCATTTCAGTAGCTATTATTTGTAATATGTAAGCACATTATCTTAGAGAAACAATCATCAAGGCTTTCTTCATTCTCTATTGGTAAGTACCAAATGTAATCGCTCTCCTTCATTTGCCATAGAATTTAGAGCACTCCATGTTTTGTTGTGCAGTATGCATCATTGTTTCATAGAGGAGAACAACATGCCATTGCTTCATCCACTCAAGGTACAACATCTTTGAGCTCCTCAGCATCCCTTGATAACTCACTATCTGATATGTACCGCTCTCCTCCAAGACCACTTCCTTACGATGCTGATCCAAGATACTTCCGCTTGCAACGTGATGGGCTAGTCTCAAGAAGGGAGAAAGGCTCAAGTCATTCACATGAGGAAACTGAACCACTACGAAGAAGTGATATTGATGATGATTCTGAATCTTTGGGTATGGGCAATAAATGGAAGGAGTCTGTATGTGAAGAAGGATCAAAAGAATATAATTCCAAGTCATTGAAATTCTCAACAGCTAAAACAACTACTGAGTTTACTCAAATTTGTTA</genome_strand>
        <mrna_strand>CCATTTATCACTCTTTTTCTGAAGGTCTTGGTCATGAAGGCCTTCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGCCAATGATAGCCGTGGAAGGTTTTTGAGTTACGGACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGCGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCACATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCATCATTGTTTCATACAGGAGAACAACATGCCATTGCTTCATCCACTCAAGGTACAACATCTTTGAGCTCCTCAGCATCCCTTGATAACTCACTATCTGATATGTACCGCTCTCCTCCAAGACCACTTCCTTACGATGCTGATCCAAGATACTTCCGCTTGCAACGTGATGGGCTAGTCTCAAGAAGGGAGAAAGGCTCAAGCCACTCGCATGAGGAAACTGAACCACTGCGAAGAAGTGATATTGATGATGATTCTGAATCTTTGGGTACGGGCAATAAATGGAAGGAGTCTGTATGTGAAGAAGGATCAAAAGAATATAATTCCCAGTCATTGAAATTCTCAACAGCTAAAACAACTACTGAGTTTACTCAAATTTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E261379" ref_strand="+" ref_description="SGN-E261379 [cLEG-57-G18]">
      <seq>agtttttgaaattttttctgaaggtcttggtcatgaagggcatcaactcattcagggtttcctgaagagagagggtgcccaattgcattttccgtaagttatattcttacaagttttgcatccataaccatctaatcacaagaatggaggattgacaatgatagccgtggaaggtttttgagttacgaacatttatttgaagacatcatcatgggtgcagtttgttgctgcttgcgagatgaatgtgaagattttgccaatccaaacagctcaatatataggaactgcttatgccttcgatgttttgttcaaaacttcttgcatatgtatgcatcattgtttcatagaggagaacaacatgccattgcttcatccactcaaggtacaacatctttgagctcctcagcatcccttgataactcactatctgatatgtaccgctctcctccaagaccacttccttacgatgctgatccaagatacttccgcttgcaacgtgatgggctagtctcaagaagggagaaaggctcaagtcattcacatgaggaaactgaaccactacgaagaagtgatattgatgatgattctgaatctttgggtatgggcaataaatggaaggagtctgtatgtgaagaaggatcaaaagaatataattccaagtcattgaaattctcaacagctaaaacaactactgagtttactcaaatttgttattcttcagaagatgaagatgtctgcccgacatgtcttgaagatatactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="+" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="41448" stop="43569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41748" g_stop="42074" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42075" i_stop="42839" i_length="765">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42840" g_stop="43266" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="754" r_length="427" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="+" ref_id="SGN-E261379" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>754</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261379" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41748" e_stop="42074"/>
          <exon e_start="42840" e_stop="43266"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTTTGAAATTTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACGAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATGGTATGCTTTTTCTACTATTGTGTAGTACTATCTTCTTTTTTTCTGCTACCTGTATTTCACCCCATTGCATTACCTTTCAGTACATCCAAATCATAACTGATTTCACTTTTAACTTTTCTGTGAATTGTCAAACTGTATGTCTACTGATCTAATTAAGAGTGCTTCAAATTGAACTTGTCATCATTGTTGCTATCGAGCACATAATTAGTCAATTTTTAGCAACATTTTTGATATCTGATAGGATAAGGTGTCAGTCTGCTATCATGAGAATCTCTCATTTAGGTGTCTTGAGTAGAGAGACTTAGGCTCATCTCTTTGATTTCTAGTGAAACAGAACTGCTCTGAATTTTTAGCTAAAGTTGGTCAATTTTTAGCAACATTTTGATATCTGATGGATAATTCATGACTTTGAATACAAAATTAAGATAATCAAAGGGAACAATAGCCAACAATTATGGTTAAGCAGAAAATACATAACTTTGGGAAGCCTTGTACGTGAGACTCCTCCATGGCATACCAAGAACTTAACTGGCAATAAGATAACTTTATGATTTCTCTGTTACTGTTCATCAAACATTCGTGCATGTACCGTAAAGAATTAATACTGCAACATCATTTCAGTAGCTATTATTTGTAATATGTAAGCACATTATCTTAGAGAAACAATCATCAAGGCTTTCTTCATTCTCTATTGGTAAGTACCAAATGTAATCGCTCTCCTTCATTTGCCATAGAATTTAGAGCACTCCATGTTTTGTTGTGCAGTATGCATCATTGTTTCATAGAGGAGAACAACATGCCATTGCTTCATCCACTCAAGGTACAACATCTTTGAGCTCCTCAGCATCCCTTGATAACTCACTATCTGATATGTACCGCTCTCCTCCAAGACCACTTCCTTACGATGCTGATCCAAGATACTTCCGCTTGCAACGTGATGGGCTAGTCTCAAGAAGGGAGAAAGGCTCAAGTCATTCACATGAGGAAACTGAACCACTACGAAGAAGTGATATTGATGATGATTCTGAATCTTTGGGTATGGGCAATAAATGGAAGGAGTCTGTATGTGAAGAAGGATCAAAAGAATATAATTCCAAGTCATTGAAATTCTCAACAGCTAAAACAACTACTGAGTTTACTCAAATTTGTTATTCTTCAGAAGATGAAGATGTCTGCCCGACATGTCTTGAAG</genome_strand>
        <mrna_strand>AGTTTTTGAAATTTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACGAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCATCATTGTTTCATAGAGGAGAACAACATGCCATTGCTTCATCCACTCAAGGTACAACATCTTTGAGCTCCTCAGCATCCCTTGATAACTCACTATCTGATATGTACCGCTCTCCTCCAAGACCACTTCCTTACGATGCTGATCCAAGATACTTCCGCTTGCAACGTGATGGGCTAGTCTCAAGAAGGGAGAAAGGCTCAAGTCATTCACATGAGGAAACTGAACCACTACGAAGAAGTGATATTGATGATGATTCTGAATCTTTGGGTATGGGCAATAAATGGAAGGAGTCTGTATGTGAAGAAGGATCAAAAGAATATAATTCCAAGTCATTGAAATTCTCAACAGCTAAAACAACTACTGAGTTTACTCAAATTTGTTATTCTTCAGAAGATGAAGATGTCTGCCCGACATGTCTTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E337727" ref_strand="+" ref_description="SGN-E337727 [cTOE-17-L2]">
      <seq>gtttttgaaattttttctgaaggtcttggtcatgaagggcatcaactcattcagggtttcctgaagagagagggtgcccaattgcattttccgtaagttatattcttacaagttttgcatccataaccatctaatcacaagaatggaggattgacaatgatagccgtggaaggtttttgagttacgaacatttatttgaagacatcatcatgggtgcagtttgttgctgcttgcgagatgaatgtgaagattttgccaatccaaacagctcaatatataggaactgcttatgccttcgatgttttgttcaaaacttcttgcatatgtatgcatcattgtttcatagaggagaacaacatgccattgcttcatccactcaagaccacttccttacgatgctgatccaagatacttccgcttgcaacgtgatgggctagtctcaagaagggagaaaggctcaagtcattcacatgaggaaactgaaccactacgaagaagtgatattgatgatgattctgaatcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="+" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="41449" stop="43408"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41749" g_stop="42074" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42075" i_stop="42839" i_length="765">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42840" g_stop="42894" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="381" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42895" i_stop="42964" i_length="70">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42965" g_stop="43108" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="525" r_length="144" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="+" ref_id="SGN-E337727" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41749" e_stop="42074"/>
          <exon e_start="42840" e_stop="42894"/>
          <exon e_start="42965" e_stop="43108"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTGAAATTTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACGAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATGGTATGCTTTTTCTACTATTGTGTAGTACTATCTTCTTTTTTTCTGCTACCTGTATTTCACCCCATTGCATTACCTTTCAGTACATCCAAATCATAACTGATTTCACTTTTAACTTTTCTGTGAATTGTCAAACTGTATGTCTACTGATCTAATTAAGAGTGCTTCAAATTGAACTTGTCATCATTGTTGCTATCGAGCACATAATTAGTCAATTTTTAGCAACATTTTTGATATCTGATAGGATAAGGTGTCAGTCTGCTATCATGAGAATCTCTCATTTAGGTGTCTTGAGTAGAGAGACTTAGGCTCATCTCTTTGATTTCTAGTGAAACAGAACTGCTCTGAATTTTTAGCTAAAGTTGGTCAATTTTTAGCAACATTTTGATATCTGATGGATAATTCATGACTTTGAATACAAAATTAAGATAATCAAAGGGAACAATAGCCAACAATTATGGTTAAGCAGAAAATACATAACTTTGGGAAGCCTTGTACGTGAGACTCCTCCATGGCATACCAAGAACTTAACTGGCAATAAGATAACTTTATGATTTCTCTGTTACTGTTCATCAAACATTCGTGCATGTACCGTAAAGAATTAATACTGCAACATCATTTCAGTAGCTATTATTTGTAATATGTAAGCACATTATCTTAGAGAAACAATCATCAAGGCTTTCTTCATTCTCTATTGGTAAGTACCAAATGTAATCGCTCTCCTTCATTTGCCATAGAATTTAGAGCACTCCATGTTTTGTTGTGCAGTATGCATCATTGTTTCATAGAGGAGAACAACATGCCATTGCTTCATCCACTCAAGGTACAACATCTTTGAGCTCCTCAGCATCCCTTGATAACTCACTATCTGATATGTACCGCTCTCCTCCAAGACCACTTCCTTACGATGCTGATCCAAGATACTTCCGCTTGCAACGTGATGGGCTAGTCTCAAGAAGGGAGAAAGGCTCAAGTCATTCACATGAGGAAACTGAACCACTACGAAGAAGTGATATTGATGATGATTCTGAATCTTT</genome_strand>
        <mrna_strand>GTTTTTGAAATTTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACGAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCATCATTGTTTCATAGAGGAGAACAACATGCCATTGCTTCATCCACTCAAG......................................................................ACCACTTCCTTACGATGCTGATCCAAGATACTTCCGCTTGCAACGTGATGGGCTAGTCTCAAGAAGGGAGAAAGGCTCAAGTCATTCACATGAGGAAACTGAACCACTACGAAGAAGTGATATTGATGATGATTCTGAATCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E200244" ref_strand="+" ref_description="SGN-E200244 [cLEC-12-A23]">
      <seq>tcattcagggtttcctgaagagagagggtgcccaattgcattttccgtaagttatattcttacaagttttgcatccataaccatctaatcacaagaatggaggattgacaatgatagccgtggaaggtttttgagttacgaacatttatttgaagacatcatcatgggtgcagtttgttgctgcttgcgagatgaatgtgaagattttgccaatccaaacagctcaatatataggaactgcttatgccttcgatgttttgttcaaaacttcttgcatatgtatgcatcattgtttcatagaggagaacaacatgccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="+" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="41495" stop="43178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41795" g_stop="42074" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42075" i_stop="42839" i_length="765">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42840" g_stop="42878" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="319" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="+" ref_id="SGN-E200244" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>319</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41795" e_stop="42074"/>
          <exon e_start="42840" e_stop="42878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACGAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATGGTATGCTTTTTCTACTATTGTGTAGTACTATCTTCTTTTTTTCTGCTACCTGTATTTCACCCCATTGCATTACCTTTCAGTACATCCAAATCATAACTGATTTCACTTTTAACTTTTCTGTGAATTGTCAAACTGTATGTCTACTGATCTAATTAAGAGTGCTTCAAATTGAACTTGTCATCATTGTTGCTATCGAGCACATAATTAGTCAATTTTTAGCAACATTTTTGATATCTGATAGGATAAGGTGTCAGTCTGCTATCATGAGAATCTCTCATTTAGGTGTCTTGAGTAGAGAGACTTAGGCTCATCTCTTTGATTTCTAGTGAAACAGAACTGCTCTGAATTTTTAGCTAAAGTTGGTCAATTTTTAGCAACATTTTGATATCTGATGGATAATTCATGACTTTGAATACAAAATTAAGATAATCAAAGGGAACAATAGCCAACAATTATGGTTAAGCAGAAAATACATAACTTTGGGAAGCCTTGTACGTGAGACTCCTCCATGGCATACCAAGAACTTAACTGGCAATAAGATAACTTTATGATTTCTCTGTTACTGTTCATCAAACATTCGTGCATGTACCGTAAAGAATTAATACTGCAACATCATTTCAGTAGCTATTATTTGTAATATGTAAGCACATTATCTTAGAGAAACAATCATCAAGGCTTTCTTCATTCTCTATTGGTAAGTACCAAATGTAATCGCTCTCCTTCATTTGCCATAGAATTTAGAGCACTCCATGTTTTGTTGTGCAGTATGCATCATTGTTTCATAGAGGAGAACAACATGCCATT</genome_strand>
        <mrna_strand>TCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACGAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCATCATTGTTTCATAGAGGAGAACAACATGCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E693612" ref_strand="+" ref_description="SGN-E693612 [LH_Ea01M10](-)">
      <seq>tgtatgcatcattgtttcatagaggagaacaacatgccattgtttcatccactcaaggtacaacatctttgagctcctcagcatcccttgataactcactatctgatatgtaccgctctcctccaagaccacttccttacgatgctgatccaagatacttccgcttgcaacgtgatgggctagtctcaagaagggagaaaggctcaagccactcgcatgaggaaactgaaccactgcgaagaagtgatattgatgatgattctgaatctttgggtacgggcaataaatggaaggagtctgtatgtgaagaaggatcaaaagaatataattccaagtcattgaaattctcaacagctaaaacaactactgagtttactcaaatttgttattcttcagaagatgaagatgtctgcccgccatgtcttgaagaatatactgaagaaaacccaaaaataatgacaaaatgctctcaccactttcacttgggttgcatatatgagtggatggagagaagtgacaactgtccagtatgcggcaaggtgatgctattcaacgagtcgccatgatctttgctcttaaaaagctctagtcgtggatgaaaccagaaggagataagggcaacaactaataacccagaaaagctaatcaacgtaaagtcattgtgaatatctgtgcagctaaatgtgtgaccatacatcagtaaaaatgaaattattgttcaatgtaactctctgtttggaaaagtggagttcatattgatcatttgatgcaccggaaccctatatgaaagtnctttatgtaattttgtttgattaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="+" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="42539" stop="78172"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42767" g_stop="42768" g_length="2"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="2" r_length="2" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42769" i_stop="42839" i_length="71">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42840" g_stop="43266" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="429" r_length="427" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43267" i_stop="43567" i_length="301">
            <donor d_prob="0.948" d_score="0.98"/>
            <acceptor a_prob="0.753" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43568" g_stop="43677" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="539" r_length="110" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43678" i_stop="46036" i_length="2359">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46037" g_stop="46310" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="820" r_length="281" r_score="0.850"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46311" i_stop="46623" i_length="313">
            <donor d_prob="0.000" d_score="0.66"/>
            <acceptor a_prob="0.136" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="46624" g_stop="46632" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="821" r_stop="829" r_length="9" r_score="0.556"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="+" ref_id="SGN-E693612" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>822</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E693612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42767" e_stop="42768"/>
          <exon e_start="42840" e_stop="43266"/>
          <exon e_start="43568" e_stop="43677"/>
          <exon e_start="46037" e_stop="46310"/>
          <exon e_start="46624" e_stop="46632"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTAAGTACCAAATGTAATCGCTCTCCTTCATTTGCCATAGAATTTAGAGCACTCCATGTTTTGTTGTGCAGTATGCATCATTGTTTCATAGAGGAGAACAACATGCCATTGCTTCATCCACTCAAGGTACAACATCTTTGAGCTCCTCAGCATCCCTTGATAACTCACTATCTGATATGTACCGCTCTCCTCCAAGACCACTTCCTTACGATGCTGATCCAAGATACTTCCGCTTGCAACGTGATGGGCTAGTCTCAAGAAGGGAGAAAGGCTCAAGTCATTCACATGAGGAAACTGAACCACTACGAAGAAGTGATATTGATGATGATTCTGAATCTTTGGGTATGGGCAATAAATGGAAGGAGTCTGTATGTGAAGAAGGATCAAAAGAATATAATTCCAAGTCATTGAAATTCTCAACAGCTAAAACAACTACTGAGTTTACTCAAATTTGTTATTCTTCAGAAGATGAAGATGTCTGCCCGACATGTCTTGAAGGTAGGTCAAGCTTTAGGTATTTTGTGATCCATCTTGTTGCACTTCATTACAGAGTAATTTATGTACTCCATCTGCTAAAATAACCATGAGAACACTTTCATATTTCACTTTCTTCCCTCTAGTATCATAGGGTAGACAATATTATTTCAGCATGCAATAGGAAATACACTAATAACTCCTGTAATTTATTTCCCTTGTAAAATAATTTGGTTTCCGTTTTATATTTTCGTTCAGTGTTTACGAAAATTCAGGAATATCTTGACTATTAATTTCCTCATCTTGATGATACTCTCTTTTCCAGAATATACTGAAGAAAACCCAAAAATAATGACAAAATGCTCTCACCACTTCCACTTGGGTTGCATATATGAGTGGATGGAGAGAAGTGACAACTGTCCAGTATGCGGCAAGGTAACTGCGATGTTCTTTATACTATATGCATACTCAATAAATATTCTTTATAACTCTGTGATGAGGTTGAGTTTTCCCTTTGTATGCTACTCCCTCTGCCCCAGTTTATGCGACACCATTTCATGTTTAGTTTGTCCCAACAAGCATGTCACCTTTATATAATTAGAATTAACAACTTTAAAATTCTCATTTTTCTTTCAATGAAATGATTTATAAGCCCACAAATGTCTAAGGTTTGTTTTAGACAACAAATTTCAAAAAGTCTTCTTTCTTTCCTTAAACTTTGTGCTAAGTCAAACAGTGCTACATAAATTGGGATGGAGGGAGTATTGTACTAGAAACGATACCCAGACATTCTGAGGCAAACAATTCACATCTTTATTTTTCTATAGTAGTATGAACTGATGTGGTTAACGATCTACTTGTGCCTTCACAAGCTGCTAAAAACCTCTCAATAGTTGCACTAATTAATTTGACAAAATTACACTTGTGTGTATGATAACAGTTTAAATTGCTCTGCTGTTGATAATTGAAAGAAAGTAGCGAAACTAGTGGGCTTCATTTTCCTTATAGTTATAACTTATAAGTAATAAGTGAGACATGAATAACTCGTGGAGGGGGCGCATATACTCCAGAACGAGCACGAGAAAGAAGCACAAGATCATCAAAGCAATAGATGGGAAGAGATAACACCATTGAGGAGATGGCTGGAAGGAGGCATAGTGCCATCAAGAGTAGCAGGAAACGAATGCGATGTCGTCAGAATGGTCACGGATAAGAGGCGTAACTCCACTAGAATGGTCTCTTAAAAGAGTCCTGATGCTATCAGAGTGGTTGTTGGGAAGAGGCCTGGTGACGCCAGATGGTCGCTAGAAAGTAGAAATGACGTTGGCAGCTAGGCAGTGTAAGGTTGCCTACACTCGATGAAAAACCTTTACAAATGGAATTATTCTACTTGAGTTTCTACCCAGATTATAGGGCCTTGGTTACCACGTGGGAGAATAAACTAAGAGAAGGTTATATCAAGGACTTAAGGATATGTTGAATTTGAGGCACACAACATAATAAATACTCATACTATATGATAGTATGGTGCAAAGTTTAAATTATTAGTTTTAGGAGAGATGGTTAGATTCTTTTTCATAGGGTTAACATTTGGTAAGTTTGTTCTTTAAAGTTCAATCATCTATCCACTGTGTACCGAGGTGCAGGAGGGTGTTAGATATAAAGAAGTCCTATGTATAAGAGGCCGTCTATTATCCACGAAGTATCAAACCATGCACCACTCAGGACGCTTACAAAGAAAAGTTGTCCCTAGATGGTATCAAAGAGATATCTGAAAGTGCCGATAATGGTTTATGGATTATTCCACCCACTGTCTAGGTTGTGGGTAAGAGGTTCCAGCTTGTCTTATGGTATGCTAGTTAAATGGCTGTAATGAAGAAGAGTGAACATTGGCCTGATTGGACTATCCATTCAGGTCTATTCTTGACTAGAAAAATTAGTCCATGCTTGGTTTGTGCCGAAATATTTACCCTGATAGAGAGTCCAACTAGTGGGGGACATGCTATGGCCTACCTAGACTATTTATTAGCAGATTCTTTCCAAATAAAACTCTTTACTGATGCCTGTGGTTCAGACAAGGGATTTGGCTGGGCCTGAGCAAATCTGTAATTTTTGTAGGGTACTTTGTCTCACAAGCCTGTTCTCTGCTCATCCATAAATCTCTGTTCAGATTACACTGCATTTGACCGTGTTCTTGGGGAGCTTTTATGATGGGCTTGAATAACGATGGGTTGGAAGTTTTAAACTGTATTACTGTTACTAAAGATGTTCAAATACGGCTCTGGCAGTATTTAAAACAAAGGTTGCTGAACATTGTTTATTCCGTTCCCTAGCATATATTGGTCTTCAGCCTGATGGATAACTAACAATGAGGACAAAGAAGGAGAAGAAAGCTGTTGTCGGTACTTGTAAGGAGAGCGCTTGCAACTCTTCCATAGAAAGAGAAAATAGTTCAGAAAACACAAAAGGGGTGGCTGAGAAACAAAATCTATTCAAGAATCTGTATAATCGGGTGGATATGACATTTTCCCTCCGATTTCTGTTTATTGGTTGCTTCAACTCAGAAAACATCTAATAAATTAATTGGGGGATGATTATGGTGAGGAGCAGAATATATGAGAGCATGAAAAGTTGTTCAGTCTCTCTAAGAACCCTCACTTCTTTATCAGTGTAGATTTAGACCGTTTCAAAGTGCTGTTGAGTAATTTCTTTTACATTCATACATATGTAGTACATTATAGTATATGATGCATAGTATTTTCTTTTCTTATTTAATGACCTCTTTGCTTTGTAGGTGATGCTATTCAACGAGTCGCCATGATCTTTGCTCTTAAAAAGCTTTAGTCGTGGATGAAACCAGAAGGAGATAAGGGCAACAACTAGTAAACCAGAAAAGCTAATCAACGTAAAGTCATTGTGAATATCTGTGCAGCTAAATGTGTGACCATACATCAGTAAAAATGAAATTA-----C--TGT-TCTCTCTGTTTGGAACTTTCGAGTTCATATTGATCATTTGATGCAACAGAAAACAGTTTCAAAGTACATCATGTAATCTTGTTTTGATTTGATGAGTGATTTCTCCCAGTGTATAGCACATTGTTCCTACTTTCACAAGTTGAATGTTGGCACATTTGTCTGCCAAAATCACTGGATCTGATACTATTTTATATCTGTTCCAACGTCATAGGGTGCAATATCCTGAAATGCTTTTATTTTAAGTCTATTTTCTAATGATGATTGCATATATATAATGTTGTACCATGTAAAGATAATAACTCAAACAACTGATGCAATATAATGTACTATGAAAAACAACTATACGATGCAAATATCATTTCAATTATGTCACATAAATCTCTCAACCTTCAATGGAAATTAAAACAGAAGTAATTA</genome_strand>
        <mrna_strand>TG.......................................................................TATGCATCATTGTTTCATAGAGGAGAACAACATGCCATTGTTTCATCCACTCAAGGTACAACATCTTTGAGCTCCTCAGCATCCCTTGATAACTCACTATCTGATATGTACCGCTCTCCTCCAAGACCACTTCCTTACGATGCTGATCCAAGATACTTCCGCTTGCAACGTGATGGGCTAGTCTCAAGAAGGGAGAAAGGCTCAAGCCACTCGCATGAGGAAACTGAACCACTGCGAAGAAGTGATATTGATGATGATTCTGAATCTTTGGGTACGGGCAATAAATGGAAGGAGTCTGTATGTGAAGAAGGATCAAAAGAATATAATTCCAAGTCATTGAAATTCTCAACAGCTAAAACAACTACTGAGTTTACTCAAATTTGTTATTCTTCAGAAGATGAAGATGTCTGCCCGCCATGTCTTGAAG.............................................................................................................................................................................................................................................................................................................AATATACTGAAGAAAACCCAAAAATAATGACAAAATGCTCTCACCACTTTCACTTGGGTTGCATATATGAGTGGATGGAGAGAAGTGACAACTGTCCAGTATGCGGCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGCTATTCAACGAGTCGCCATGATCTTTGCTCTTAAAAAGCTCTAGTCGTGGATGAAACCAGAAGGAGATAAGGGCAACAACTAATAACCCAGAAAAGCTAATCAACGTAAAGTCATTGTGAATATCTGTGCAGCTAAATGTGTGACCATACATCAGTAAAAATGAAATTATTGTTCAATGTAACTCTCTGTTTGGAAAAGTGGAGTTCATATTGATCATTTGATGCACCGGAACCCTATATGAAAGTNCTTTATGTAATTTTG-TTTGATTAAAAAA.........................................................................................................................................................................................................................................................................................................................AAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E542549" ref_strand="-" ref_description="SGN-E542549 [TUS-63-O15]">
      <seq>tcaaggtacaacatctttgagctcttcagcatcccttgataactcactatctgatatgtaccgctctcctccaagaccacttccttacgatgctgatccaagatacttccgcttgcaacgtgatgggctagtctcaagaagggagaaaggctcaagtcattcacatgaggaaactgaaccactacgaagaagtgatattgatgatgattctgaatctttgggtatgggcaataaatggaaggagtctgtatgtgaagaaggatcaaaagaatataattccaagtcattgaaattctcaacagctaaaacaactactgagtttactcaaatttgttattcttcagaagatgaagatgtctgcccgacatgtcttgaagaatatactgaagaaaacccaaaaataatgacaaaatgctctcaccacttccacttgggttgcatatatgagtggatggagagaagtgacaactgtccagtatgcggcaaggtgatgctattcaacgagtcgccatgatctttgctcttaaaaagctttagtcgtggatgaaaccagaaggagataagggcaacaactagtaaaccagaaaagctaatcaacgtaaagtcattgtgaatatctgtgcagctaaatgtgtgaccatacatcagtaaaaatgaaattactgttctctctgtttggaactttcgagttcatattgatcatttgatgcaacagaaaacagtttcaaagtacatcatgtaatcttgttttgatttgatgagtgatttctcccagtgtatagcacattgttcctactttcacaagttgaatgttggcacattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="+" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="42590" stop="46672"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42890" g_stop="43266" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43267" i_stop="43567" i_length="301">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.753" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43568" g_stop="43677" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="487" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43678" i_stop="46036" i_length="2359">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46037" g_stop="46372" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="823" r_length="336" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="+" ref_id="SGN-E542549" ref_strand="-">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>823</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542549" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="42890" e_stop="43266"/>
          <exon e_start="43568" e_stop="43677"/>
          <exon e_start="46037" e_stop="46372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGGTACAACATCTTTGAGCTCCTCAGCATCCCTTGATAACTCACTATCTGATATGTACCGCTCTCCTCCAAGACCACTTCCTTACGATGCTGATCCAAGATACTTCCGCTTGCAACGTGATGGGCTAGTCTCAAGAAGGGAGAAAGGCTCAAGTCATTCACATGAGGAAACTGAACCACTACGAAGAAGTGATATTGATGATGATTCTGAATCTTTGGGTATGGGCAATAAATGGAAGGAGTCTGTATGTGAAGAAGGATCAAAAGAATATAATTCCAAGTCATTGAAATTCTCAACAGCTAAAACAACTACTGAGTTTACTCAAATTTGTTATTCTTCAGAAGATGAAGATGTCTGCCCGACATGTCTTGAAGGTAGGTCAAGCTTTAGGTATTTTGTGATCCATCTTGTTGCACTTCATTACAGAGTAATTTATGTACTCCATCTGCTAAAATAACCATGAGAACACTTTCATATTTCACTTTCTTCCCTCTAGTATCATAGGGTAGACAATATTATTTCAGCATGCAATAGGAAATACACTAATAACTCCTGTAATTTATTTCCCTTGTAAAATAATTTGGTTTCCGTTTTATATTTTCGTTCAGTGTTTACGAAAATTCAGGAATATCTTGACTATTAATTTCCTCATCTTGATGATACTCTCTTTTCCAGAATATACTGAAGAAAACCCAAAAATAATGACAAAATGCTCTCACCACTTCCACTTGGGTTGCATATATGAGTGGATGGAGAGAAGTGACAACTGTCCAGTATGCGGCAAGGTAACTGCGATGTTCTTTATACTATATGCATACTCAATAAATATTCTTTATAACTCTGTGATGAGGTTGAGTTTTCCCTTTGTATGCTACTCCCTCTGCCCCAGTTTATGCGACACCATTTCATGTTTAGTTTGTCCCAACAAGCATGTCACCTTTATATAATTAGAATTAACAACTTTAAAATTCTCATTTTTCTTTCAATGAAATGATTTATAAGCCCACAAATGTCTAAGGTTTGTTTTAGACAACAAATTTCAAAAAGTCTTCTTTCTTTCCTTAAACTTTGTGCTAAGTCAAACAGTGCTACATAAATTGGGATGGAGGGAGTATTGTACTAGAAACGATACCCAGACATTCTGAGGCAAACAATTCACATCTTTATTTTTCTATAGTAGTATGAACTGATGTGGTTAACGATCTACTTGTGCCTTCACAAGCTGCTAAAAACCTCTCAATAGTTGCACTAATTAATTTGACAAAATTACACTTGTGTGTATGATAACAGTTTAAATTGCTCTGCTGTTGATAATTGAAAGAAAGTAGCGAAACTAGTGGGCTTCATTTTCCTTATAGTTATAACTTATAAGTAATAAGTGAGACATGAATAACTCGTGGAGGGGGCGCATATACTCCAGAACGAGCACGAGAAAGAAGCACAAGATCATCAAAGCAATAGATGGGAAGAGATAACACCATTGAGGAGATGGCTGGAAGGAGGCATAGTGCCATCAAGAGTAGCAGGAAACGAATGCGATGTCGTCAGAATGGTCACGGATAAGAGGCGTAACTCCACTAGAATGGTCTCTTAAAAGAGTCCTGATGCTATCAGAGTGGTTGTTGGGAAGAGGCCTGGTGACGCCAGATGGTCGCTAGAAAGTAGAAATGACGTTGGCAGCTAGGCAGTGTAAGGTTGCCTACACTCGATGAAAAACCTTTACAAATGGAATTATTCTACTTGAGTTTCTACCCAGATTATAGGGCCTTGGTTACCACGTGGGAGAATAAACTAAGAGAAGGTTATATCAAGGACTTAAGGATATGTTGAATTTGAGGCACACAACATAATAAATACTCATACTATATGATAGTATGGTGCAAAGTTTAAATTATTAGTTTTAGGAGAGATGGTTAGATTCTTTTTCATAGGGTTAACATTTGGTAAGTTTGTTCTTTAAAGTTCAATCATCTATCCACTGTGTACCGAGGTGCAGGAGGGTGTTAGATATAAAGAAGTCCTATGTATAAGAGGCCGTCTATTATCCACGAAGTATCAAACCATGCACCACTCAGGACGCTTACAAAGAAAAGTTGTCCCTAGATGGTATCAAAGAGATATCTGAAAGTGCCGATAATGGTTTATGGATTATTCCACCCACTGTCTAGGTTGTGGGTAAGAGGTTCCAGCTTGTCTTATGGTATGCTAGTTAAATGGCTGTAATGAAGAAGAGTGAACATTGGCCTGATTGGACTATCCATTCAGGTCTATTCTTGACTAGAAAAATTAGTCCATGCTTGGTTTGTGCCGAAATATTTACCCTGATAGAGAGTCCAACTAGTGGGGGACATGCTATGGCCTACCTAGACTATTTATTAGCAGATTCTTTCCAAATAAAACTCTTTACTGATGCCTGTGGTTCAGACAAGGGATTTGGCTGGGCCTGAGCAAATCTGTAATTTTTGTAGGGTACTTTGTCTCACAAGCCTGTTCTCTGCTCATCCATAAATCTCTGTTCAGATTACACTGCATTTGACCGTGTTCTTGGGGAGCTTTTATGATGGGCTTGAATAACGATGGGTTGGAAGTTTTAAACTGTATTACTGTTACTAAAGATGTTCAAATACGGCTCTGGCAGTATTTAAAACAAAGGTTGCTGAACATTGTTTATTCCGTTCCCTAGCATATATTGGTCTTCAGCCTGATGGATAACTAACAATGAGGACAAAGAAGGAGAAGAAAGCTGTTGTCGGTACTTGTAAGGAGAGCGCTTGCAACTCTTCCATAGAAAGAGAAAATAGTTCAGAAAACACAAAAGGGGTGGCTGAGAAACAAAATCTATTCAAGAATCTGTATAATCGGGTGGATATGACATTTTCCCTCCGATTTCTGTTTATTGGTTGCTTCAACTCAGAAAACATCTAATAAATTAATTGGGGGATGATTATGGTGAGGAGCAGAATATATGAGAGCATGAAAAGTTGTTCAGTCTCTCTAAGAACCCTCACTTCTTTATCAGTGTAGATTTAGACCGTTTCAAAGTGCTGTTGAGTAATTTCTTTTACATTCATACATATGTAGTACATTATAGTATATGATGCATAGTATTTTCTTTTCTTATTTAATGACCTCTTTGCTTTGTAGGTGATGCTATTCAACGAGTCGCCATGATCTTTGCTCTTAAAAAGCTTTAGTCGTGGATGAAACCAGAAGGAGATAAGGGCAACAACTAGTAAACCAGAAAAGCTAATCAACGTAAAGTCATTGTGAATATCTGTGCAGCTAAATGTGTGACCATACATCAGTAAAAATGAAATTACTGTTCTCTCTGTTTGGAACTTTCGAGTTCATATTGATCATTTGATGCAACAGAAAACAGTTTCAAAGTACATCATGTAATCTTGTTTTGATTTGATGAGTGATTTCTCCCAGTGTATAGCACATTGTTCCTACTTTCACAAGTTGAATGTTGGCACATTT</genome_strand>
        <mrna_strand>TCAAGGTACAACATCTTTGAGCTCTTCAGCATCCCTTGATAACTCACTATCTGATATGTACCGCTCTCCTCCAAGACCACTTCCTTACGATGCTGATCCAAGATACTTCCGCTTGCAACGTGATGGGCTAGTCTCAAGAAGGGAGAAAGGCTCAAGTCATTCACATGAGGAAACTGAACCACTACGAAGAAGTGATATTGATGATGATTCTGAATCTTTGGGTATGGGCAATAAATGGAAGGAGTCTGTATGTGAAGAAGGATCAAAAGAATATAATTCCAAGTCATTGAAATTCTCAACAGCTAAAACAACTACTGAGTTTACTCAAATTTGTTATTCTTCAGAAGATGAAGATGTCTGCCCGACATGTCTTGAAG.............................................................................................................................................................................................................................................................................................................AATATACTGAAGAAAACCCAAAAATAATGACAAAATGCTCTCACCACTTCCACTTGGGTTGCATATATGAGTGGATGGAGAGAAGTGACAACTGTCCAGTATGCGGCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGCTATTCAACGAGTCGCCATGATCTTTGCTCTTAAAAAGCTTTAGTCGTGGATGAAACCAGAAGGAGATAAGGGCAACAACTAGTAAACCAGAAAAGCTAATCAACGTAAAGTCATTGTGAATATCTGTGCAGCTAAATGTGTGACCATACATCAGTAAAAATGAAATTACTGTTCTCTCTGTTTGGAACTTTCGAGTTCATATTGATCATTTGATGCAACAGAAAACAGTTTCAAAGTACATCATGTAATCTTGTTTTGATTTGATGAGTGATTTCTCCCAGTGTATAGCACATTGTTCCTACTTTCACAAGTTGAATGTTGGCACATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E336850" ref_strand="+" ref_description="SGN-E336850 [cTOE-5-G19]">
      <seq>agatacttccgcttgcaacgtgatgggctagtctcaagaagggagaaaggctcaagtcattcacatgaggaaactgaaccactacgaagaagtgatattgatgatgattctgaatctttgggtatgggcaataaatggaaggagtctgtatgtgaagaaggatcaaaagaatataattccaagtcattgaaattctcaacagctaaaacaactactgagtttactcaaatttgttattcttcagaagatgaagatgtctgcccgacatgtcttgaagaatatactgaagaaaacccaaaaataatgacaaaatgctctcaccacttccacttgggttgcatatatgagtggatggagagaagtgacaactgtccagtatgcggcaaggtgatgctattcaacgagtcgccatgatctttgctcttaaaaagctttagtcgtggatgaaacccagaggagataagggcaacaactagtaaaccagaaaagctaatcaacgtaaagtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="+" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="42690" stop="46456"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42990" g_stop="43266" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43267" i_stop="43567" i_length="301">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.753" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43568" g_stop="43677" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="387" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43678" i_stop="46036" i_length="2359">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46037" g_stop="46156" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="507" r_length="120" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="+" ref_id="SGN-E336850" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42990" e_stop="43266"/>
          <exon e_start="43568" e_stop="43677"/>
          <exon e_start="46037" e_stop="46156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATACTTCCGCTTGCAACGTGATGGGCTAGTCTCAAGAAGGGAGAAAGGCTCAAGTCATTCACATGAGGAAACTGAACCACTACGAAGAAGTGATATTGATGATGATTCTGAATCTTTGGGTATGGGCAATAAATGGAAGGAGTCTGTATGTGAAGAAGGATCAAAAGAATATAATTCCAAGTCATTGAAATTCTCAACAGCTAAAACAACTACTGAGTTTACTCAAATTTGTTATTCTTCAGAAGATGAAGATGTCTGCCCGACATGTCTTGAAGGTAGGTCAAGCTTTAGGTATTTTGTGATCCATCTTGTTGCACTTCATTACAGAGTAATTTATGTACTCCATCTGCTAAAATAACCATGAGAACACTTTCATATTTCACTTTCTTCCCTCTAGTATCATAGGGTAGACAATATTATTTCAGCATGCAATAGGAAATACACTAATAACTCCTGTAATTTATTTCCCTTGTAAAATAATTTGGTTTCCGTTTTATATTTTCGTTCAGTGTTTACGAAAATTCAGGAATATCTTGACTATTAATTTCCTCATCTTGATGATACTCTCTTTTCCAGAATATACTGAAGAAAACCCAAAAATAATGACAAAATGCTCTCACCACTTCCACTTGGGTTGCATATATGAGTGGATGGAGAGAAGTGACAACTGTCCAGTATGCGGCAAGGTAACTGCGATGTTCTTTATACTATATGCATACTCAATAAATATTCTTTATAACTCTGTGATGAGGTTGAGTTTTCCCTTTGTATGCTACTCCCTCTGCCCCAGTTTATGCGACACCATTTCATGTTTAGTTTGTCCCAACAAGCATGTCACCTTTATATAATTAGAATTAACAACTTTAAAATTCTCATTTTTCTTTCAATGAAATGATTTATAAGCCCACAAATGTCTAAGGTTTGTTTTAGACAACAAATTTCAAAAAGTCTTCTTTCTTTCCTTAAACTTTGTGCTAAGTCAAACAGTGCTACATAAATTGGGATGGAGGGAGTATTGTACTAGAAACGATACCCAGACATTCTGAGGCAAACAATTCACATCTTTATTTTTCTATAGTAGTATGAACTGATGTGGTTAACGATCTACTTGTGCCTTCACAAGCTGCTAAAAACCTCTCAATAGTTGCACTAATTAATTTGACAAAATTACACTTGTGTGTATGATAACAGTTTAAATTGCTCTGCTGTTGATAATTGAAAGAAAGTAGCGAAACTAGTGGGCTTCATTTTCCTTATAGTTATAACTTATAAGTAATAAGTGAGACATGAATAACTCGTGGAGGGGGCGCATATACTCCAGAACGAGCACGAGAAAGAAGCACAAGATCATCAAAGCAATAGATGGGAAGAGATAACACCATTGAGGAGATGGCTGGAAGGAGGCATAGTGCCATCAAGAGTAGCAGGAAACGAATGCGATGTCGTCAGAATGGTCACGGATAAGAGGCGTAACTCCACTAGAATGGTCTCTTAAAAGAGTCCTGATGCTATCAGAGTGGTTGTTGGGAAGAGGCCTGGTGACGCCAGATGGTCGCTAGAAAGTAGAAATGACGTTGGCAGCTAGGCAGTGTAAGGTTGCCTACACTCGATGAAAAACCTTTACAAATGGAATTATTCTACTTGAGTTTCTACCCAGATTATAGGGCCTTGGTTACCACGTGGGAGAATAAACTAAGAGAAGGTTATATCAAGGACTTAAGGATATGTTGAATTTGAGGCACACAACATAATAAATACTCATACTATATGATAGTATGGTGCAAAGTTTAAATTATTAGTTTTAGGAGAGATGGTTAGATTCTTTTTCATAGGGTTAACATTTGGTAAGTTTGTTCTTTAAAGTTCAATCATCTATCCACTGTGTACCGAGGTGCAGGAGGGTGTTAGATATAAAGAAGTCCTATGTATAAGAGGCCGTCTATTATCCACGAAGTATCAAACCATGCACCACTCAGGACGCTTACAAAGAAAAGTTGTCCCTAGATGGTATCAAAGAGATATCTGAAAGTGCCGATAATGGTTTATGGATTATTCCACCCACTGTCTAGGTTGTGGGTAAGAGGTTCCAGCTTGTCTTATGGTATGCTAGTTAAATGGCTGTAATGAAGAAGAGTGAACATTGGCCTGATTGGACTATCCATTCAGGTCTATTCTTGACTAGAAAAATTAGTCCATGCTTGGTTTGTGCCGAAATATTTACCCTGATAGAGAGTCCAACTAGTGGGGGACATGCTATGGCCTACCTAGACTATTTATTAGCAGATTCTTTCCAAATAAAACTCTTTACTGATGCCTGTGGTTCAGACAAGGGATTTGGCTGGGCCTGAGCAAATCTGTAATTTTTGTAGGGTACTTTGTCTCACAAGCCTGTTCTCTGCTCATCCATAAATCTCTGTTCAGATTACACTGCATTTGACCGTGTTCTTGGGGAGCTTTTATGATGGGCTTGAATAACGATGGGTTGGAAGTTTTAAACTGTATTACTGTTACTAAAGATGTTCAAATACGGCTCTGGCAGTATTTAAAACAAAGGTTGCTGAACATTGTTTATTCCGTTCCCTAGCATATATTGGTCTTCAGCCTGATGGATAACTAACAATGAGGACAAAGAAGGAGAAGAAAGCTGTTGTCGGTACTTGTAAGGAGAGCGCTTGCAACTCTTCCATAGAAAGAGAAAATAGTTCAGAAAACACAAAAGGGGTGGCTGAGAAACAAAATCTATTCAAGAATCTGTATAATCGGGTGGATATGACATTTTCCCTCCGATTTCTGTTTATTGGTTGCTTCAACTCAGAAAACATCTAATAAATTAATTGGGGGATGATTATGGTGAGGAGCAGAATATATGAGAGCATGAAAAGTTGTTCAGTCTCTCTAAGAACCCTCACTTCTTTATCAGTGTAGATTTAGACCGTTTCAAAGTGCTGTTGAGTAATTTCTTTTACATTCATACATATGTAGTACATTATAGTATATGATGCATAGTATTTTCTTTTCTTATTTAATGACCTCTTTGCTTTGTAGGTGATGCTATTCAACGAGTCGCCATGATCTTTGCTCTTAAAAAGCTTTAGTCGTGGATGAAACCAGAAGGAGATAAGGGCAACAACTAGTAAACCAGAAAAGCTAATCAACGTAAAGTCA</genome_strand>
        <mrna_strand>AGATACTTCCGCTTGCAACGTGATGGGCTAGTCTCAAGAAGGGAGAAAGGCTCAAGTCATTCACATGAGGAAACTGAACCACTACGAAGAAGTGATATTGATGATGATTCTGAATCTTTGGGTATGGGCAATAAATGGAAGGAGTCTGTATGTGAAGAAGGATCAAAAGAATATAATTCCAAGTCATTGAAATTCTCAACAGCTAAAACAACTACTGAGTTTACTCAAATTTGTTATTCTTCAGAAGATGAAGATGTCTGCCCGACATGTCTTGAAG.............................................................................................................................................................................................................................................................................................................AATATACTGAAGAAAACCCAAAAATAATGACAAAATGCTCTCACCACTTCCACTTGGGTTGCATATATGAGTGGATGGAGAGAAGTGACAACTGTCCAGTATGCGGCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGCTATTCAACGAGTCGCCATGATCTTTGCTCTTAAAAAGCTTTAGTCGTGGATGAAACCCAGAGGAGATAAGGGCAACAACTAGTAAACCAGAAAAGCTAATCAACGTAAAGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E301111" ref_strand="-" ref_description="SGN-E301111 [cLEW-22-C13]">
      <seq>gaatatactgaagaaaacccaaaaataatgacaaaatgctctcaccacttccacttgggttgcatatatgagtggatggagagaagtgacaactgtccagtatgcggcaaggtgatgctattcaacgagtcgccatgatctttgctcttaaaaagctttagtcgtggatgaaaccagaaggagataagggcaacaactagtaaaccagaaaagctaatcaacgtaaagtcattgtgaatatctgtgcagctaaatgtgtgaccatacatcagtaaaaatgaaattactgttctctctgtttggaactttcgagttcatattgatcatttgatgcaacagaaaacagtttcaaagtacatcatgtaatcttgttttgatttgatgagtgatttctcccagtgtatagcacattgttcctactttcacaagttgaatgttggcacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="+" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="43267" stop="46671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43567" g_stop="43677" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43678" i_stop="46036" i_length="2359">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46037" g_stop="46371" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="446" r_length="335" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="+" ref_id="SGN-E301111" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301111" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="43567" e_stop="43677"/>
          <exon e_start="46037" e_stop="46371"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATATACTGAAGAAAACCCAAAAATAATGACAAAATGCTCTCACCACTTCCACTTGGGTTGCATATATGAGTGGATGGAGAGAAGTGACAACTGTCCAGTATGCGGCAAGGTAACTGCGATGTTCTTTATACTATATGCATACTCAATAAATATTCTTTATAACTCTGTGATGAGGTTGAGTTTTCCCTTTGTATGCTACTCCCTCTGCCCCAGTTTATGCGACACCATTTCATGTTTAGTTTGTCCCAACAAGCATGTCACCTTTATATAATTAGAATTAACAACTTTAAAATTCTCATTTTTCTTTCAATGAAATGATTTATAAGCCCACAAATGTCTAAGGTTTGTTTTAGACAACAAATTTCAAAAAGTCTTCTTTCTTTCCTTAAACTTTGTGCTAAGTCAAACAGTGCTACATAAATTGGGATGGAGGGAGTATTGTACTAGAAACGATACCCAGACATTCTGAGGCAAACAATTCACATCTTTATTTTTCTATAGTAGTATGAACTGATGTGGTTAACGATCTACTTGTGCCTTCACAAGCTGCTAAAAACCTCTCAATAGTTGCACTAATTAATTTGACAAAATTACACTTGTGTGTATGATAACAGTTTAAATTGCTCTGCTGTTGATAATTGAAAGAAAGTAGCGAAACTAGTGGGCTTCATTTTCCTTATAGTTATAACTTATAAGTAATAAGTGAGACATGAATAACTCGTGGAGGGGGCGCATATACTCCAGAACGAGCACGAGAAAGAAGCACAAGATCATCAAAGCAATAGATGGGAAGAGATAACACCATTGAGGAGATGGCTGGAAGGAGGCATAGTGCCATCAAGAGTAGCAGGAAACGAATGCGATGTCGTCAGAATGGTCACGGATAAGAGGCGTAACTCCACTAGAATGGTCTCTTAAAAGAGTCCTGATGCTATCAGAGTGGTTGTTGGGAAGAGGCCTGGTGACGCCAGATGGTCGCTAGAAAGTAGAAATGACGTTGGCAGCTAGGCAGTGTAAGGTTGCCTACACTCGATGAAAAACCTTTACAAATGGAATTATTCTACTTGAGTTTCTACCCAGATTATAGGGCCTTGGTTACCACGTGGGAGAATAAACTAAGAGAAGGTTATATCAAGGACTTAAGGATATGTTGAATTTGAGGCACACAACATAATAAATACTCATACTATATGATAGTATGGTGCAAAGTTTAAATTATTAGTTTTAGGAGAGATGGTTAGATTCTTTTTCATAGGGTTAACATTTGGTAAGTTTGTTCTTTAAAGTTCAATCATCTATCCACTGTGTACCGAGGTGCAGGAGGGTGTTAGATATAAAGAAGTCCTATGTATAAGAGGCCGTCTATTATCCACGAAGTATCAAACCATGCACCACTCAGGACGCTTACAAAGAAAAGTTGTCCCTAGATGGTATCAAAGAGATATCTGAAAGTGCCGATAATGGTTTATGGATTATTCCACCCACTGTCTAGGTTGTGGGTAAGAGGTTCCAGCTTGTCTTATGGTATGCTAGTTAAATGGCTGTAATGAAGAAGAGTGAACATTGGCCTGATTGGACTATCCATTCAGGTCTATTCTTGACTAGAAAAATTAGTCCATGCTTGGTTTGTGCCGAAATATTTACCCTGATAGAGAGTCCAACTAGTGGGGGACATGCTATGGCCTACCTAGACTATTTATTAGCAGATTCTTTCCAAATAAAACTCTTTACTGATGCCTGTGGTTCAGACAAGGGATTTGGCTGGGCCTGAGCAAATCTGTAATTTTTGTAGGGTACTTTGTCTCACAAGCCTGTTCTCTGCTCATCCATAAATCTCTGTTCAGATTACACTGCATTTGACCGTGTTCTTGGGGAGCTTTTATGATGGGCTTGAATAACGATGGGTTGGAAGTTTTAAACTGTATTACTGTTACTAAAGATGTTCAAATACGGCTCTGGCAGTATTTAAAACAAAGGTTGCTGAACATTGTTTATTCCGTTCCCTAGCATATATTGGTCTTCAGCCTGATGGATAACTAACAATGAGGACAAAGAAGGAGAAGAAAGCTGTTGTCGGTACTTGTAAGGAGAGCGCTTGCAACTCTTCCATAGAAAGAGAAAATAGTTCAGAAAACACAAAAGGGGTGGCTGAGAAACAAAATCTATTCAAGAATCTGTATAATCGGGTGGATATGACATTTTCCCTCCGATTTCTGTTTATTGGTTGCTTCAACTCAGAAAACATCTAATAAATTAATTGGGGGATGATTATGGTGAGGAGCAGAATATATGAGAGCATGAAAAGTTGTTCAGTCTCTCTAAGAACCCTCACTTCTTTATCAGTGTAGATTTAGACCGTTTCAAAGTGCTGTTGAGTAATTTCTTTTACATTCATACATATGTAGTACATTATAGTATATGATGCATAGTATTTTCTTTTCTTATTTAATGACCTCTTTGCTTTGTAGGTGATGCTATTCAACGAGTCGCCATGATCTTTGCTCTTAAAAAGCTTTAGTCGTGGATGAAACCAGAAGGAGATAAGGGCAACAACTAGTAAACCAGAAAAGCTAATCAACGTAAAGTCATTGTGAATATCTGTGCAGCTAAATGTGTGACCATACATCAGTAAAAATGAAATTACTGTTCTCTCTGTTTGGAACTTTCGAGTTCATATTGATCATTTGATGCAACAGAAAACAGTTTCAAAGTACATCATGTAATCTTGTTTTGATTTGATGAGTGATTTCTCCCAGTGTATAGCACATTGTTCCTACTTTCACAAGTTGAATGTTGGCACATT</genome_strand>
        <mrna_strand>GAATATACTGAAGAAAACCCAAAAATAATGACAAAATGCTCTCACCACTTCCACTTGGGTTGCATATATGAGTGGATGGAGAGAAGTGACAACTGTCCAGTATGCGGCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGCTATTCAACGAGTCGCCATGATCTTTGCTCTTAAAAAGCTTTAGTCGTGGATGAAACCAGAAGGAGATAAGGGCAACAACTAGTAAACCAGAAAAGCTAATCAACGTAAAGTCATTGTGAATATCTGTGCAGCTAAATGTGTGACCATACATCAGTAAAAATGAAATTACTGTTCTCTCTGTTTGGAACTTTCGAGTTCATATTGATCATTTGATGCAACAGAAAACAGTTTCAAAGTACATCATGTAATCTTGTTTTGATTTGATGAGTGATTTCTCCCAGTGTATAGCACATTGTTCCTACTTTCACAAGTTGAATGTTGGCACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E595917" ref_strand="+" ref_description="SGN-E595917 [39200]">
      <seq>tgacaaaatgctctcaccacttccacttgggttgcatatatgagtggatggagagaagtgacaactgtccagtatgcggcaaggtgatgctattcaacgagtcgccatgatctttactcataaaaagctctagtcgtggatgaaaccagcaggagataagggcaacaactaataaaccagaaaagctaatcaatgtaaagtcattgtgaatatctgtccagctaaatgtgtgaccatacatcagtaaaaatgaaatttttgttcaatgcaactttctgtttggaactttcgagttcatattgatcgtttgatgcaacagaaaacagtttcaaagcactttatgtaatcttgttttgatttgatgaatggtttctcccagtgtatagcacattgttcctactttcacaatttgaatgttggcacatttgtctgccaaaatcactatagtatttatacattgatctgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="+" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="43295" stop="46694"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43595" g_stop="43677" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43678" i_stop="46036" i_length="2359">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46037" g_stop="46388" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="443" r_length="360" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="466" polyA_stop="475"/>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="+" ref_id="SGN-E595917" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="0.916" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E595917" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43595" e_stop="43677"/>
          <exon e_start="46037" e_stop="46388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACAAAATGCTCTCACCACTTCCACTTGGGTTGCATATATGAGTGGATGGAGAGAAGTGACAACTGTCCAGTATGCGGCAAGGTAACTGCGATGTTCTTTATACTATATGCATACTCAATAAATATTCTTTATAACTCTGTGATGAGGTTGAGTTTTCCCTTTGTATGCTACTCCCTCTGCCCCAGTTTATGCGACACCATTTCATGTTTAGTTTGTCCCAACAAGCATGTCACCTTTATATAATTAGAATTAACAACTTTAAAATTCTCATTTTTCTTTCAATGAAATGATTTATAAGCCCACAAATGTCTAAGGTTTGTTTTAGACAACAAATTTCAAAAAGTCTTCTTTCTTTCCTTAAACTTTGTGCTAAGTCAAACAGTGCTACATAAATTGGGATGGAGGGAGTATTGTACTAGAAACGATACCCAGACATTCTGAGGCAAACAATTCACATCTTTATTTTTCTATAGTAGTATGAACTGATGTGGTTAACGATCTACTTGTGCCTTCACAAGCTGCTAAAAACCTCTCAATAGTTGCACTAATTAATTTGACAAAATTACACTTGTGTGTATGATAACAGTTTAAATTGCTCTGCTGTTGATAATTGAAAGAAAGTAGCGAAACTAGTGGGCTTCATTTTCCTTATAGTTATAACTTATAAGTAATAAGTGAGACATGAATAACTCGTGGAGGGGGCGCATATACTCCAGAACGAGCACGAGAAAGAAGCACAAGATCATCAAAGCAATAGATGGGAAGAGATAACACCATTGAGGAGATGGCTGGAAGGAGGCATAGTGCCATCAAGAGTAGCAGGAAACGAATGCGATGTCGTCAGAATGGTCACGGATAAGAGGCGTAACTCCACTAGAATGGTCTCTTAAAAGAGTCCTGATGCTATCAGAGTGGTTGTTGGGAAGAGGCCTGGTGACGCCAGATGGTCGCTAGAAAGTAGAAATGACGTTGGCAGCTAGGCAGTGTAAGGTTGCCTACACTCGATGAAAAACCTTTACAAATGGAATTATTCTACTTGAGTTTCTACCCAGATTATAGGGCCTTGGTTACCACGTGGGAGAATAAACTAAGAGAAGGTTATATCAAGGACTTAAGGATATGTTGAATTTGAGGCACACAACATAATAAATACTCATACTATATGATAGTATGGTGCAAAGTTTAAATTATTAGTTTTAGGAGAGATGGTTAGATTCTTTTTCATAGGGTTAACATTTGGTAAGTTTGTTCTTTAAAGTTCAATCATCTATCCACTGTGTACCGAGGTGCAGGAGGGTGTTAGATATAAAGAAGTCCTATGTATAAGAGGCCGTCTATTATCCACGAAGTATCAAACCATGCACCACTCAGGACGCTTACAAAGAAAAGTTGTCCCTAGATGGTATCAAAGAGATATCTGAAAGTGCCGATAATGGTTTATGGATTATTCCACCCACTGTCTAGGTTGTGGGTAAGAGGTTCCAGCTTGTCTTATGGTATGCTAGTTAAATGGCTGTAATGAAGAAGAGTGAACATTGGCCTGATTGGACTATCCATTCAGGTCTATTCTTGACTAGAAAAATTAGTCCATGCTTGGTTTGTGCCGAAATATTTACCCTGATAGAGAGTCCAACTAGTGGGGGACATGCTATGGCCTACCTAGACTATTTATTAGCAGATTCTTTCCAAATAAAACTCTTTACTGATGCCTGTGGTTCAGACAAGGGATTTGGCTGGGCCTGAGCAAATCTGTAATTTTTGTAGGGTACTTTGTCTCACAAGCCTGTTCTCTGCTCATCCATAAATCTCTGTTCAGATTACACTGCATTTGACCGTGTTCTTGGGGAGCTTTTATGATGGGCTTGAATAACGATGGGTTGGAAGTTTTAAACTGTATTACTGTTACTAAAGATGTTCAAATACGGCTCTGGCAGTATTTAAAACAAAGGTTGCTGAACATTGTTTATTCCGTTCCCTAGCATATATTGGTCTTCAGCCTGATGGATAACTAACAATGAGGACAAAGAAGGAGAAGAAAGCTGTTGTCGGTACTTGTAAGGAGAGCGCTTGCAACTCTTCCATAGAAAGAGAAAATAGTTCAGAAAACACAAAAGGGGTGGCTGAGAAACAAAATCTATTCAAGAATCTGTATAATCGGGTGGATATGACATTTTCCCTCCGATTTCTGTTTATTGGTTGCTTCAACTCAGAAAACATCTAATAAATTAATTGGGGGATGATTATGGTGAGGAGCAGAATATATGAGAGCATGAAAAGTTGTTCAGTCTCTCTAAGAACCCTCACTTCTTTATCAGTGTAGATTTAGACCGTTTCAAAGTGCTGTTGAGTAATTTCTTTTACATTCATACATATGTAGTACATTATAGTATATGATGCATAGTATTTTCTTTTCTTATTTAATGACCTCTTTGCTTTGTAGGTGATGCTATTCAACGAGTCGCCATGATCTTTGCTCTTAAAAAGCTTTAGTCGTGGATGAAACCAGAAGGAGATAAGGGCAACAACTAGTAAACCAGAAAAGCTAATCAACGTAAAGTCATTGTGAATATCTGTGCAGCTAAATGTGTGACCATACATCAGTAAAAATGAAATTACTGTTC--T----C--TCTGTTTGGAACTTTCGAGTTCATATTGATCATTTGATGCAACAGAAAACAGTTTCAAAGTACATCATGTAATCTTGTTTTGATTTGATGAGTGATTTCTCCCAGTGTATAGCACATTGTTCCTACTTTCACAAGTTGAATGTTGGCACATTTGTCTGCCAAAATCACT</genome_strand>
        <mrna_strand>TGACAAAATGCTCTCACCACTTCCACTTGGGTTGCATATATGAGTGGATGGAGAGAAGTGACAACTGTCCAGTATGCGGCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGCTATTCAACGAGTCGCCATGATCTTTACTCATAAAAAGCTCTAGTCGTGGATGAAACCAGCAGGAGATAAGGGCAACAACTAATAAACCAGAAAAGCTAATCAATGTAAAGTCATTGTGAATATCTGTCCAGCTAAATGTGTGACCATACATCAGTAAAAATGAAATTTTTGTTCAATGCAACTTTCTGTTTGGAACTTTCGAGTTCATATTGATCGTTTGATGCAACAGAAAACAGTTTCAAAGCACTTTATGTAATCTTGTTTTGATTTGATGAATGGTTTCTCCCAGTGTATAGCACATTGTTCCTACTTTCACAATTTGAATGTTGGCACATTTGTCTGCCAAAATCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E543265" ref_strand="+" ref_description="SGN-E543265 [TUS-64-P22](-)">
      <seq>ggaaaaagaacttcataaagctatagcgtaacccagtgatcagtatgatttgagattaagtggcatccgtttcttctcaacccttctgcacctaaagaagggattaacaagaaagattactacagaaataagtttggatctcgctctgaacaaatgatgtcaagaatgtcggaggtttttaagggccttgggatggaatacaacatgtcaggacttacgggaagtagtctggacagccacaggctactatatttcgcaggacaacaggggcttgacaagcaaaataatcttgctgaggagctttttctcggctatttcacacagggaaggtatataggtgacagagaatttcttattgaagctgcaagaaaagttggtgtggaaggagcagctgacttccttgaagatcccaacaatgggctaaaggaggtgaatgaagagcttcagcaacactcatcaaatatatcaggcgtcccacattttgtgctaaatggcaagtaccagttgagcggtggccaacctccagagagtttcatacgagcttttcaagctgcttcaaatgtcacagcatagttcatctccaacttcatctaagagtctttctacctcttgtgaagttgtatgcccactggatagataccggtgactcttcttaaagtgaaatattcgatcagtattatatatatgtgctcgtggcgacttaattgtactgcagtaattacttctgttttaatttccattgaaggttgagagatttatgtgacataattgaaatgatatttgcatcgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="48703" stop="46256"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48403" g_stop="48348" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48347" i_stop="48266" i_length="82">
            <donor d_prob="0.361" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48265" g_stop="48146" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="174" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48145" i_stop="48046" i_length="100">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48045" g_stop="48002" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="218" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48001" i_stop="47917" i_length="85">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47916" g_stop="47791" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="344" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47790" i_stop="47470" i_length="321">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47469" g_stop="47385" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="429" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47384" i_stop="47011" i_length="374">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47010" g_stop="46954" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="486" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="46953" i_stop="46862" i_length="92">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="46861" g_stop="46556" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="792" r_length="306" r_score="0.997"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="46555" i_stop="46410" i_length="146">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.959" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="46409" g_stop="46403" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="793" r_stop="799" r_length="7" r_score="0.714"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E543265" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48403" e_stop="48348"/>
          <exon e_start="48265" e_stop="48146"/>
          <exon e_start="48045" e_stop="48002"/>
          <exon e_start="47916" e_stop="47791"/>
          <exon e_start="47469" e_stop="47385"/>
          <exon e_start="47010" e_stop="46954"/>
          <exon e_start="46861" e_stop="46556"/>
          <exon e_start="46409" e_stop="46403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAAAGAACCTTCATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTTTGAGGTGCCATTTGCTTCTGTTATCTGTGGTTCCTTTACTGCCTCTTCCTCTATCTTCACTGGAAAAATCTTTTTTCCTTTTGTAGATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATGTCGGAGGTTCATATTTTCTTCTTTTCTCTGGTAGCCCAAACAATGTGTCTTGAGAAGTTGCCTCCAGTGTGTATCACCTAATTTCAACCTTTTCAAAATCATGCAGGTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTACGTAAGTCTCTGGCGGTTTGCGAAACACAAGAAAAGCTGTGAAGTGCAAAAGACTTGTGCTATAACAGTTTGTTTTCGGTATGCAGGGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAGGTTAGTGCCTATTCTCCTGACATAGTGAAATTAGTTGCATTAGCATACTAATGCTACACAGTAACAATATTCAATTTTCTTCTCATTTTCCTTTCTATTGGATCTTTCTCCTGAGTTTTGATAATGATTTAAAGTTTTAGTCCTTGTATAAATATTGATCATTACAGTGATGCATCACTGGTCAATAGCCATTTTCCTTCTTTTTTTCCCAGTGTTTTATGACCATAAGCAGATGTTATGCATAATAAATATGGCGACATAGTTAGTATAGAAGATGTCATATATAGTTTAAAGTGACAGCATTTGACTCTCAACGTGTAGAGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAGGTATATTTCCACAGCTTCTATCCAATAGCCAACTGGAGAGTCTGTCTTCTATTTTTCTTGCTCGTTTCCTTTCTCGCAGAACATTCACTGAGGGGTGTGTGGGTGTGGGTGTAAGTAGTACTGCTGGAGAACTGCTAAAGACAGTAGTAAAGCAGCCCATCTCAATTATATCTGTACTTGGCATTATGACTAGTATTTTGTCCTGCTCCTTGATGGACCTAGTCATTCATATCACATGTTACCTAATTTTCAGTACCTCATGCTCACTACTACTACTACTTCCCCAATCCCCCCTGCAGGTTGGCTCGTCAGTAGGATAGATCACAATTTTATAAATATTTAAAGTAAATTTTGTTGGTTTTGGGTATGTGAAGGTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTGGTATGTAAACGCATTTTAGCACATTGTTCCCATAAGCACTTTCGATATGTTAATCCATGAATGAGAAAGTACTAAGAAGTTATATTTGGCAGCTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGTCACAGCATAGTTCATCTCCAACTTCATCTAAGAGTCTTTCTACCTCTTGTGAAGTTGTATGCCCACTGGATAGATACCGGTGACTCTTCTTAAAGTGAAATATTCGATCAGTATTATATATATGTGCTCGTGGCGACTTAATTGTACTGCAGTAATTACTTCTGTTTTAATTTCCATTGAAGGTTGAGAGATTTATGTGACATAATTGAAATGATATTTGCATCGTATAGTTGTTTTTCATAGTACATTATATTGCATCAGTTGTTTGAGTTATTATCTTTACATGGTACAACATTATATATATGCAATCATCATTAGAAAATAGACTTAAAATAAAAGCATTTCAGGATATTGCACCCTATGACGTTGGAACAGATATAAA</genome_strand>
        <mrna_strand>GGAAAAAGAA-CTTCATAAAGCTATAGCGTAACCCAGTGATCAGTATGA-TTTGAG..................................................................................ATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATGTCGGAG....................................................................................................GTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTAC.....................................................................................GGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAG.................................................................................................................................................................................................................................................................................................................................AGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAG......................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTG............................................................................................CTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGTCACAGCATAGTTCATCTCCAACTTCATCTAAGAGTCTTTCTACCTCTTGTGAAGTTGTATGCCCACTGGATAGATACCGGTGACTCTTCTTAAAGTGAAATATTCGATCAGTATTATATATATGTGCTCGTGGCGACTTAATTGTACTGCAGTAATTACTTCTGTTTTAATTTCCATTGAAGGTTGAGAGATTTATGTGACATAATTGAAATGATATTTGCATCGTAAA..................................................................................................................................................AAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E714623" ref_strand="+" ref_description="SGN-E714623 [FB11DH07]">
      <seq>ggttcctgcatcgattaatggccaccaactgtggaaagaagtttatccgaattgatatcagttcggatactgtgtgcccctggtgctttgtggggaaaaagaaccttcataaagctatagcgttaaccagtgatcagtatgattttgagattaagtggcatccgtttcttctcaacccttctgcacctaaagaagggattaacaagaaagattactacagaaataagtttggatctcgctctgaacaaatgatgtcaagaatgtcggaggtttttaagggccttgggatggaatacaacatgtcaggactaacgggaagtagtctggacagccacaggctactatatttcgcaggacaacaggggcttgacaagcaaaataatcttgctgaggagctttttctcggctatttcacacagggaaggtatataggtgacagagaatttcttattgaagctgcaagaaaagttggtgtggaaggagcagctgacttccttgaagatcccaacaatgggctaaaggaggtgaatgaagagcttcagcaacactcatcaaatatatcaggcgtcccacattttgtgctaaatggcaagtaccagttgagcggtggccaacctccagagagtttcatacgagcttttcaagctgcttcaaatgtcacagcatagttcatctccaacttcatctaagagtctttctacctcttgtgaagttgtatgcccactggatagataccggtgactcttcttaaagtgaaatattcgatcagtattatatatatgtgctcgtggcgacttaattgtactgcagtaattacttctgttttaatttccattgaaggttgagagatttatgtgacataattgaaatgatatttgcatcgtatagttgtttttcataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="48796" stop="46233"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48496" g_stop="48348" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48347" i_stop="48266" i_length="82">
            <donor d_prob="0.361" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48265" g_stop="48146" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="269" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48145" i_stop="48046" i_length="100">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48045" g_stop="48002" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="313" r_length="44" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48001" i_stop="47917" i_length="85">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47916" g_stop="47791" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="439" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47790" i_stop="47470" i_length="321">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47469" g_stop="47385" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="524" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47384" i_stop="47011" i_length="374">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47010" g_stop="46954" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="581" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="46953" i_stop="46862" i_length="92">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="46861" g_stop="46532" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="911" r_length="330" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E714623" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>911</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714623" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48496" e_stop="48348"/>
          <exon e_start="48265" e_stop="48146"/>
          <exon e_start="48045" e_stop="48002"/>
          <exon e_start="47916" e_stop="47791"/>
          <exon e_start="47469" e_stop="47385"/>
          <exon e_start="47010" e_stop="46954"/>
          <exon e_start="46861" e_stop="46532"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTCCTGCATCGATTAATGGCCACCAACTGTGGAAAGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTCATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTTTGAGGTGCCATTTGCTTCTGTTATCTGTGGTTCCTTTACTGCCTCTTCCTCTATCTTCACTGGAAAAATCTTTTTTCCTTTTGTAGATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATGTCGGAGGTTCATATTTTCTTCTTTTCTCTGGTAGCCCAAACAATGTGTCTTGAGAAGTTGCCTCCAGTGTGTATCACCTAATTTCAACCTTTTCAAAATCATGCAGGTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTACGTAAGTCTCTGGCGGTTTGCGAAACACAAGAAAAGCTGTGAAGTGCAAAAGACTTGTGCTATAACAGTTTGTTTTCGGTATGCAGGGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAGGTTAGTGCCTATTCTCCTGACATAGTGAAATTAGTTGCATTAGCATACTAATGCTACACAGTAACAATATTCAATTTTCTTCTCATTTTCCTTTCTATTGGATCTTTCTCCTGAGTTTTGATAATGATTTAAAGTTTTAGTCCTTGTATAAATATTGATCATTACAGTGATGCATCACTGGTCAATAGCCATTTTCCTTCTTTTTTTCCCAGTGTTTTATGACCATAAGCAGATGTTATGCATAATAAATATGGCGACATAGTTAGTATAGAAGATGTCATATATAGTTTAAAGTGACAGCATTTGACTCTCAACGTGTAGAGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAGGTATATTTCCACAGCTTCTATCCAATAGCCAACTGGAGAGTCTGTCTTCTATTTTTCTTGCTCGTTTCCTTTCTCGCAGAACATTCACTGAGGGGTGTGTGGGTGTGGGTGTAAGTAGTACTGCTGGAGAACTGCTAAAGACAGTAGTAAAGCAGCCCATCTCAATTATATCTGTACTTGGCATTATGACTAGTATTTTGTCCTGCTCCTTGATGGACCTAGTCATTCATATCACATGTTACCTAATTTTCAGTACCTCATGCTCACTACTACTACTACTTCCCCAATCCCCCCTGCAGGTTGGCTCGTCAGTAGGATAGATCACAATTTTATAAATATTTAAAGTAAATTTTGTTGGTTTTGGGTATGTGAAGGTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTGGTATGTAAACGCATTTTAGCACATTGTTCCCATAAGCACTTTCGATATGTTAATCCATGAATGAGAAAGTACTAAGAAGTTATATTTGGCAGCTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGTCACAGCATAGTTCATCTCCAACTTCATCTAAGAGTCTTTCTACCTCTTGTGAAGTTGTATGCCCACTGGATAGATACCGGTGACTCTTCTTAAAGTGAAATATTCGATCAGTATTATATATATGTGCTCGTGGCGACTTAATTGTACTGCAGTAATTACTTCTGTTTTAATTTCCATTGAAGGTTGAGAGATTTATGTGACATAATTGAAATGATATTTGCATCGTATAGTTGTTTTTCATAGTACATTATAT</genome_strand>
        <mrna_strand>GGTTCCTGCATCGATTAATGGCCACCAACTGTGGAAAGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTCATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTTTGAG..................................................................................ATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATGTCGGAG....................................................................................................GTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTAAC.....................................................................................GGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAG.................................................................................................................................................................................................................................................................................................................................AGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAG......................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTG............................................................................................CTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGTCACAGCATAGTTCATCTCCAACTTCATCTAAGAGTCTTTCTACCTCTTGTGAAGTTGTATGCCCACTGGATAGATACCGGTGACTCTTCTTAAAGTGAAATATTCGATCAGTATTATATATATGTGCTCGTGGCGACTTAATTGTACTGCAGTAATTACTTCTGTTTTAATTTCCATTGAAGGTTGAGAGATTTATGTGACATAATTGAAATGATATTTGCATCGTATAGTTGTTTTTCATAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E373684" ref_strand="+" ref_description="SGN-E373684 [TUS-33-G6](-)">
      <seq>tcagtatgattttgagattaagtggcatccgtttcttctcaacccttctgcacctaaagaagggattaacaagaaagattactacagaaataagtttggatctcgctctgaacaaatgatgtcaagaatgtcggaggtttttaagggccttgggatggaatacaacatgtcaggacttacgggaagtagtctggacagccacaggctactatatttcgcaggacaacaggggcttgacaagcaaaataatcttgctgaggagctttttctcggctatttcacacagggaaggtatataggtgacagagaatttcttattgaagctgcaagaaaagttggtgtggaaggagcagctgacttccttgaagatcccaacaatgggctaaaggaggtgaatgaagagcttcagcaacactcatcaaatatatcaggcgtcccacattttgtgctaaatggcaagtaccagttgagcggtggccaacctccagagagtttcatacgagcttttcaagctgcttcaaatgtcacagcatagttcatctccaacttcatctaagagtctttctacctcttgtgaagttgtatgcccactggatagataccggtgactcttcttaaagtgaaatattcgatcagtattatatatatgtgctcgtggcgacttaattgtactgcagtaattacttctgttttaatttccattgaaggttgagagatttatgtgacataattgaaatgatatttgcatcgtatagttgtttttcatagtaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="48578" stop="46233"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48363" g_stop="48348" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48347" i_stop="48266" i_length="82">
            <donor d_prob="0.361" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48265" g_stop="48146" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="136" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48145" i_stop="48046" i_length="100">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48045" g_stop="48002" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="180" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48001" i_stop="47917" i_length="85">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47916" g_stop="47791" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="306" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47790" i_stop="47470" i_length="321">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47469" g_stop="47385" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="391" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47384" i_stop="47011" i_length="374">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47010" g_stop="46954" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="448" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="46953" i_stop="46862" i_length="92">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="46861" g_stop="46532" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="778" r_length="330" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E373684" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>778</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48363" e_stop="48348"/>
          <exon e_start="48265" e_stop="48146"/>
          <exon e_start="48045" e_stop="48002"/>
          <exon e_start="47916" e_stop="47791"/>
          <exon e_start="47469" e_stop="47385"/>
          <exon e_start="47010" e_stop="46954"/>
          <exon e_start="46861" e_stop="46532"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTATGATTTTGAGGTGCCATTTGCTTCTGTTATCTGTGGTTCCTTTACTGCCTCTTCCTCTATCTTCACTGGAAAAATCTTTTTTCCTTTTGTAGATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATGTCGGAGGTTCATATTTTCTTCTTTTCTCTGGTAGCCCAAACAATGTGTCTTGAGAAGTTGCCTCCAGTGTGTATCACCTAATTTCAACCTTTTCAAAATCATGCAGGTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTACGTAAGTCTCTGGCGGTTTGCGAAACACAAGAAAAGCTGTGAAGTGCAAAAGACTTGTGCTATAACAGTTTGTTTTCGGTATGCAGGGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAGGTTAGTGCCTATTCTCCTGACATAGTGAAATTAGTTGCATTAGCATACTAATGCTACACAGTAACAATATTCAATTTTCTTCTCATTTTCCTTTCTATTGGATCTTTCTCCTGAGTTTTGATAATGATTTAAAGTTTTAGTCCTTGTATAAATATTGATCATTACAGTGATGCATCACTGGTCAATAGCCATTTTCCTTCTTTTTTTCCCAGTGTTTTATGACCATAAGCAGATGTTATGCATAATAAATATGGCGACATAGTTAGTATAGAAGATGTCATATATAGTTTAAAGTGACAGCATTTGACTCTCAACGTGTAGAGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAGGTATATTTCCACAGCTTCTATCCAATAGCCAACTGGAGAGTCTGTCTTCTATTTTTCTTGCTCGTTTCCTTTCTCGCAGAACATTCACTGAGGGGTGTGTGGGTGTGGGTGTAAGTAGTACTGCTGGAGAACTGCTAAAGACAGTAGTAAAGCAGCCCATCTCAATTATATCTGTACTTGGCATTATGACTAGTATTTTGTCCTGCTCCTTGATGGACCTAGTCATTCATATCACATGTTACCTAATTTTCAGTACCTCATGCTCACTACTACTACTACTTCCCCAATCCCCCCTGCAGGTTGGCTCGTCAGTAGGATAGATCACAATTTTATAAATATTTAAAGTAAATTTTGTTGGTTTTGGGTATGTGAAGGTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTGGTATGTAAACGCATTTTAGCACATTGTTCCCATAAGCACTTTCGATATGTTAATCCATGAATGAGAAAGTACTAAGAAGTTATATTTGGCAGCTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGTCACAGCATAGTTCATCTCCAACTTCATCTAAGAGTCTTTCTACCTCTTGTGAAGTTGTATGCCCACTGGATAGATACCGGTGACTCTTCTTAAAGTGAAATATTCGATCAGTATTATATATATGTGCTCGTGGCGACTTAATTGTACTGCAGTAATTACTTCTGTTTTAATTTCCATTGAAGGTTGAGAGATTTATGTGACATAATTGAAATGATATTTGCATCGTATAGTTGTTTTTCATAGTACATTATAT</genome_strand>
        <mrna_strand>TCAGTATGATTTTGAG..................................................................................ATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATGTCGGAG....................................................................................................GTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTAC.....................................................................................GGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAG.................................................................................................................................................................................................................................................................................................................................AGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAG......................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTG............................................................................................CTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGTCACAGCATAGTTCATCTCCAACTTCATCTAAGAGTCTTTCTACCTCTTGTGAAGTTGTATGCCCACTGGATAGATACCGGTGACTCTTCTTAAAGTGAAATATTCGATCAGTATTATATATATGTGCTCGTGGCGACTTAATTGTACTGCAGTAATTACTTCTGTTTTAATTTCCATTGAAGGTTGAGAGATTTATGTGACATAATTGAAATGATATTTGCATCGTATAGTTGTTTTTCATAGTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E226938" ref_strand="+" ref_description="SGN-E226938 [cLEL-26-N11](-)">
      <seq>gtatataggtgacagagaatttcttattgaagctgcaagaaaagttggtgtggaaggagcagctgacttccttgaagatcccaacaatgggctaaaggaggtgaatgaagagcttcagcaacactcatcaaatatatcaggcgtcccacattttgtgctaaatggcaagtaccagttgagcggtggccaacctccagagagtttcatacgagcttttcaagctgcttcaaatgtcacagcatagttcatctccaacttcatctaagagtctttctacctcttgtgaagttgtatgcccactggatagataccggtgactcttcttaaagtgaaatattcgatcagtattatatatatgtgctcgtggcgacttaattgtactgcagtaattacttctgttttaatttccattgaaggttgagagatttatgtgacataattgaaatgatatttgcatcgtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="47771" stop="46256"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47469" g_stop="47385" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="100" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47384" i_stop="47011" i_length="374">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47010" g_stop="46954" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="157" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46953" i_stop="46862" i_length="92">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46861" g_stop="46556" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="463" r_length="306" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="464" polyA_stop="477"/>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E226938" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47469" e_stop="47385"/>
          <exon e_start="47010" e_stop="46954"/>
          <exon e_start="46861" e_stop="46556"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAGGTATATTTCCACAGCTTCTATCCAATAGCCAACTGGAGAGTCTGTCTTCTATTTTTCTTGCTCGTTTCCTTTCTCGCAGAACATTCACTGAGGGGTGTGTGGGTGTGGGTGTAAGTAGTACTGCTGGAGAACTGCTAAAGACAGTAGTAAAGCAGCCCATCTCAATTATATCTGTACTTGGCATTATGACTAGTATTTTGTCCTGCTCCTTGATGGACCTAGTCATTCATATCACATGTTACCTAATTTTCAGTACCTCATGCTCACTACTACTACTACTTCCCCAATCCCCCCTGCAGGTTGGCTCGTCAGTAGGATAGATCACAATTTTATAAATATTTAAAGTAAATTTTGTTGGTTTTGGGTATGTGAAGGTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTGGTATGTAAACGCATTTTAGCACATTGTTCCCATAAGCACTTTCGATATGTTAATCCATGAATGAGAAAGTACTAAGAAGTTATATTTGGCAGCTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGTCACAGCATAGTTCATCTCCAACTTCATCTAAGAGTCTTTCTACCTCTTGTGAAGTTGTATGCCCACTGGATAGATACCGGTGACTCTTCTTAAAGTGAAATATTCGATCAGTATTATATATATGTGCTCGTGGCGACTTAATTGTACTGCAGTAATTACTTCTGTTTTAATTTCCATTGAAGGTTGAGAGATTTATGTGACATAATTGAAATGATATTTGCATCGTATA</genome_strand>
        <mrna_strand>AGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAG......................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTG............................................................................................CTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGTCACAGCATAGTTCATCTCCAACTTCATCTAAGAGTCTTTCTACCTCTTGTGAAGTTGTATGCCCACTGGATAGATACCGGTGACTCTTCTTAAAGTGAAATATTCGATCAGTATTATATATATGTGCTCGTGGCGACTTAATTGTACTGCAGTAATTACTTCTGTTTTAATTTCCATTGAAGGTTGAGAGATTTATGTGACATAATTGAAATGATATTTGCATCGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E220778" ref_strand="+" ref_description="SGN-E220778 [cLEL-22-H21](-)">
      <seq>ttcagcaacactcatcaaatatatcaggcgtcccacattttgtgctaaatggcaagtaccagttgagcggtggccaacctccagagagtttcatacgagcttttcaagctgcttcaaatgtcacagcatagttcatctccaacttcatctaagagtctttctacctcttgtgaagttgtatgcccactggatagataccggtgactcttcttaaagtgaaatattcgatcagtattatatatatgtgctcgtggcgacttaattgtactgcagtaattacttctgttttaatttccattgaaggttgagagatttatgtgacataattgaaatgatatttgcatcgtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="47297" stop="46256"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46997" g_stop="46954" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46953" i_stop="46862" i_length="92">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46861" g_stop="46556" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="350" r_length="306" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="351" polyA_stop="364"/>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E220778" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>350</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E220778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46997" e_stop="46954"/>
          <exon e_start="46861" e_stop="46556"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTGGTATGTAAACGCATTTTAGCACATTGTTCCCATAAGCACTTTCGATATGTTAATCCATGAATGAGAAAGTACTAAGAAGTTATATTTGGCAGCTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGTCACAGCATAGTTCATCTCCAACTTCATCTAAGAGTCTTTCTACCTCTTGTGAAGTTGTATGCCCACTGGATAGATACCGGTGACTCTTCTTAAAGTGAAATATTCGATCAGTATTATATATATGTGCTCGTGGCGACTTAATTGTACTGCAGTAATTACTTCTGTTTTAATTTCCATTGAAGGTTGAGAGATTTATGTGACATAATTGAAATGATATTTGCATCGTATA</genome_strand>
        <mrna_strand>TTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTG............................................................................................CTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGTCACAGCATAGTTCATCTCCAACTTCATCTAAGAGTCTTTCTACCTCTTGTGAAGTTGTATGCCCACTGGATAGATACCGGTGACTCTTCTTAAAGTGAAATATTCGATCAGTATTATATATATGTGCTCGTGGCGACTTAATTGTACTGCAGTAATTACTTCTGTTTTAATTTCCATTGAAGGTTGAGAGATTTATGTGACATAATTGAAATGATATTTGCATCGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E221161" ref_strand="+" ref_description="SGN-E221161 [cLEL-22-H21](-)">
      <seq>tcatcaaatatatcaggcgtcccacattttgtgctaaatggcaagtaccagttgagcggtggccaacctccagagagtttcatacgagcttttcaagctgcttcaaatgtcacagcatagttcatctccaacttcatctaagagtctttctacctcttgtgaagttgtatgcccactggatagataccggtgactcttcttaaagtgaaatattcgatcagtattatatatatgtgctcgtggcgacttaattgtactgcagtaattacttctgttttaatttccattgaaggttgagagatttatgtgacataattgaaatgatatttgcatcgtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="47286" stop="46256"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46986" g_stop="46954" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46953" i_stop="46862" i_length="92">
            <donor d_prob="0.952" d_score="0.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46861" g_stop="46556" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="339" r_length="306" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="340" polyA_stop="353"/>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E221161" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>339</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221161" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46986" e_stop="46954"/>
          <exon e_start="46861" e_stop="46556"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCAAATATATCAGGCGTCCCACATTTTGTGGTATGTAAACGCATTTTAGCACATTGTTCCCATAAGCACTTTCGATATGTTAATCCATGAATGAGAAAGTACTAAGAAGTTATATTTGGCAGCTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGTCACAGCATAGTTCATCTCCAACTTCATCTAAGAGTCTTTCTACCTCTTGTGAAGTTGTATGCCCACTGGATAGATACCGGTGACTCTTCTTAAAGTGAAATATTCGATCAGTATTATATATATGTGCTCGTGGCGACTTAATTGTACTGCAGTAATTACTTCTGTTTTAATTTCCATTGAAGGTTGAGAGATTTATGTGACATAATTGAAATGATATTTGCATCGTATA</genome_strand>
        <mrna_strand>TCATCAAATATATCAGGCGTCCCACATTTTGTG............................................................................................CTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGTCACAGCATAGTTCATCTCCAACTTCATCTAAGAGTCTTTCTACCTCTTGTGAAGTTGTATGCCCACTGGATAGATACCGGTGACTCTTCTTAAAGTGAAATATTCGATCAGTATTATATATATGTGCTCGTGGCGACTTAATTGTACTGCAGTAATTACTTCTGTTTTAATTTCCATTGAAGGTTGAGAGATTTATGTGACATAATTGAAATGATATTTGCATCGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E226603" ref_strand="+" ref_description="SGN-E226603 [cLEL-26-N11](-)">
      <seq>gaagatcccaacaatgggctaaaggaggtgaatgaagagcttcagcaacactcatcaaatatatcaggcgtcccacattttgtgctaaatggcaagtaccagttgagcggtggccaacctccagagagtttcatacgagcttttcaagctgcttcaaatgtcacagcatagttcatctccaacttcatctaagagtctttctacctcttgtgaagttgtatgcccactggatagataccggtgactcttcttaaagtgaaatattcgatcagtattatatatatgtgctcgtggcgacttaattgtactgcagtaattacttctgttttaatttccattgaaggttgagagatttatgtgacataattgaaatgatatttgcatcgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="47711" stop="46256"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47411" g_stop="47385" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47384" i_stop="47011" i_length="374">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47010" g_stop="46954" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="84" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46953" i_stop="46862" i_length="92">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46861" g_stop="46561" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="385" r_length="301" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="387" polyA_stop="404"/>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E226603" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226603" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47411" e_stop="47385"/>
          <exon e_start="47010" e_stop="46954"/>
          <exon e_start="46861" e_stop="46561"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATCCCAACAATGGGCTAAAGGAGGTATATTTCCACAGCTTCTATCCAATAGCCAACTGGAGAGTCTGTCTTCTATTTTTCTTGCTCGTTTCCTTTCTCGCAGAACATTCACTGAGGGGTGTGTGGGTGTGGGTGTAAGTAGTACTGCTGGAGAACTGCTAAAGACAGTAGTAAAGCAGCCCATCTCAATTATATCTGTACTTGGCATTATGACTAGTATTTTGTCCTGCTCCTTGATGGACCTAGTCATTCATATCACATGTTACCTAATTTTCAGTACCTCATGCTCACTACTACTACTACTTCCCCAATCCCCCCTGCAGGTTGGCTCGTCAGTAGGATAGATCACAATTTTATAAATATTTAAAGTAAATTTTGTTGGTTTTGGGTATGTGAAGGTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTGGTATGTAAACGCATTTTAGCACATTGTTCCCATAAGCACTTTCGATATGTTAATCCATGAATGAGAAAGTACTAAGAAGTTATATTTGGCAGCTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGTCACAGCATAGTTCATCTCCAACTTCATCTAAGAGTCTTTCTACCTCTTGTGAAGTTGTATGCCCACTGGATAGATACCGGTGACTCTTCTTAAAGTGAAATATTCGATCAGTATTATATATATGTGCTCGTGGCGACTTAATTGTACTGCAGTAATTACTTCTGTTTTAATTTCCATTGAAGGTTGAGAGATTTATGTGACATAATTGAAATGATATTTGCATC</genome_strand>
        <mrna_strand>GAAGATCCCAACAATGGGCTAAAGGAG......................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTG............................................................................................CTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGTCACAGCATAGTTCATCTCCAACTTCATCTAAGAGTCTTTCTACCTCTTGTGAAGTTGTATGCCCACTGGATAGATACCGGTGACTCTTCTTAAAGTGAAATATTCGATCAGTATTATATATATGTGCTCGTGGCGACTTAATTGTACTGCAGTAATTACTTCTGTTTTAATTTCCATTGAAGGTTGAGAGATTTATGTGACATAATTGAAATGATATTTGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E257687" ref_strand="+" ref_description="SGN-E257687 [cLEG-39-G12]">
      <seq>tcgctctgaacaaatgatgtcaagaatgtcggaggtttttaagggccttgggatggaatacaacatgtcaggacttacgggaagtagtctggacagccacaggctactatatttcgcaggacaacaggggcttgacaagcaaaataatcttgctgaggagctttttctcggctatttcacacagggaaggtatataggtgacagagaatttcttattgaagctgcaagaaaagttggtgtggaaggagcagctgacttccttgaagatcccaacaatgggctaaaggaggtgaatgaagagcttcagcaacactcatcaaatatatcaggcgtcccacattttgtgctaaatggcaagtaccagttgagcggtggccaacctccagagagtttcatacgagcttttcaagctgcttcaaatgtcacagcatagttcatctccaacttcatctaagagtctttctacctcttgtgaagttgtatgcccactggatagataccggtgactcttcttaaagtgaaatattcgatcagtattatatatatgtgctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="48479" stop="46355"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48179" g_stop="48146" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48145" i_stop="48046" i_length="100">
            <donor d_prob="0.932" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48045" g_stop="48002" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="78" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48001" i_stop="47917" i_length="85">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47916" g_stop="47791" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="204" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47790" i_stop="47470" i_length="321">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47469" g_stop="47385" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="289" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47384" i_stop="47011" i_length="374">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47010" g_stop="46954" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="346" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="46953" i_stop="46862" i_length="92">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="46861" g_stop="46655" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="553" r_length="207" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E257687" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48179" e_stop="48146"/>
          <exon e_start="48045" e_stop="48002"/>
          <exon e_start="47916" e_stop="47791"/>
          <exon e_start="47469" e_stop="47385"/>
          <exon e_start="47010" e_stop="46954"/>
          <exon e_start="46861" e_stop="46655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCTCTGAACAAATGATGTCAAGAATGTCGGAGGTTCATATTTTCTTCTTTTCTCTGGTAGCCCAAACAATGTGTCTTGAGAAGTTGCCTCCAGTGTGTATCACCTAATTTCAACCTTTTCAAAATCATGCAGGTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTACGTAAGTCTCTGGCGGTTTGCGAAACACAAGAAAAGCTGTGAAGTGCAAAAGACTTGTGCTATAACAGTTTGTTTTCGGTATGCAGGGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAGGTTAGTGCCTATTCTCCTGACATAGTGAAATTAGTTGCATTAGCATACTAATGCTACACAGTAACAATATTCAATTTTCTTCTCATTTTCCTTTCTATTGGATCTTTCTCCTGAGTTTTGATAATGATTTAAAGTTTTAGTCCTTGTATAAATATTGATCATTACAGTGATGCATCACTGGTCAATAGCCATTTTCCTTCTTTTTTTCCCAGTGTTTTATGACCATAAGCAGATGTTATGCATAATAAATATGGCGACATAGTTAGTATAGAAGATGTCATATATAGTTTAAAGTGACAGCATTTGACTCTCAACGTGTAGAGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAGGTATATTTCCACAGCTTCTATCCAATAGCCAACTGGAGAGTCTGTCTTCTATTTTTCTTGCTCGTTTCCTTTCTCGCAGAACATTCACTGAGGGGTGTGTGGGTGTGGGTGTAAGTAGTACTGCTGGAGAACTGCTAAAGACAGTAGTAAAGCAGCCCATCTCAATTATATCTGTACTTGGCATTATGACTAGTATTTTGTCCTGCTCCTTGATGGACCTAGTCATTCATATCACATGTTACCTAATTTTCAGTACCTCATGCTCACTACTACTACTACTTCCCCAATCCCCCCTGCAGGTTGGCTCGTCAGTAGGATAGATCACAATTTTATAAATATTTAAAGTAAATTTTGTTGGTTTTGGGTATGTGAAGGTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTGGTATGTAAACGCATTTTAGCACATTGTTCCCATAAGCACTTTCGATATGTTAATCCATGAATGAGAAAGTACTAAGAAGTTATATTTGGCAGCTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGTCACAGCATAGTTCATCTCCAACTTCATCTAAGAGTCTTTCTACCTCTTGTGAAGTTGTATGCCCACTGGATAGATACCGGTGACTCTTCTTAAAGTGAAATATTCGATCAGTATTATATATATGTGCTCG</genome_strand>
        <mrna_strand>TCGCTCTGAACAAATGATGTCAAGAATGTCGGAG....................................................................................................GTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTAC.....................................................................................GGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAG.................................................................................................................................................................................................................................................................................................................................AGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAG......................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTG............................................................................................CTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGTCACAGCATAGTTCATCTCCAACTTCATCTAAGAGTCTTTCTACCTCTTGTGAAGTTGTATGCCCACTGGATAGATACCGGTGACTCTTCTTAAAGTGAAATATTCGATCAGTATTATATATATGTGCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E546448" ref_strand="+" ref_description="SGN-E546448 [TUS-69-N3](-)">
      <seq>agaagtttatccgaattgatatcagttcggatactgtgtgcccctgtgctttgtggggaaaagaaaccttgataaagctatagcgttaaccagtgatcagtatgattttgagattaagtggcatccgtttcttctcaacccttctgcacctaaagaagggattaacaagaaagattactacagaaataagtttggatctcgctctgaacaaatgatgtcaagaatgtcagaggtttttaagggccttgggatggaatacaacatgtcaggacttacgggaagtagtctggacagccacaggctactatatttcgcaggacagcaggggcttgacaagcaaaataatcttgctgaggagctttttctcggctatttcacacagggaaggtatataggtgacagagaatttcttgttgaagctgcaagaaaggttggtgtggaaggagcagctgacttccttgaagatcccaataatgggctaaaggaggtgaatgaagagcttcagcaacactcatcaaatatatcaggcgtcccacattttgtgctaaatggcaagtaccagttgagcggtggccaacctccagagagtttcatccaagcttttctagctgcttcaaatgtcacagcatagttcttctccaacttcatttaagagtctttctacctcttgtgaagttgtatgcccactggatagataccggtgactcttcttaaaatgaaatattctatcagtattataaatgcctgtactctagtttaagtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="48760" stop="46361"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48460" g_stop="48348" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48347" i_stop="48266" i_length="82">
            <donor d_prob="0.361" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48265" g_stop="48146" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="232" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48145" i_stop="48046" i_length="100">
            <donor d_prob="0.932" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48045" g_stop="48002" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="276" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48001" i_stop="47917" i_length="85">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47916" g_stop="47791" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="402" r_length="126" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47790" i_stop="47470" i_length="321">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47469" g_stop="47385" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="487" r_length="85" r_score="0.965"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47384" i_stop="47011" i_length="374">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47010" g_stop="46954" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="544" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="46953" i_stop="46862" i_length="92">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="46861" g_stop="46664" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="742" r_length="198" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="763" polyA_stop="773"/>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E546448" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48460" e_stop="48348"/>
          <exon e_start="48265" e_stop="48146"/>
          <exon e_start="48045" e_stop="48002"/>
          <exon e_start="47916" e_stop="47791"/>
          <exon e_start="47469" e_stop="47385"/>
          <exon e_start="47010" e_stop="46954"/>
          <exon e_start="46861" e_stop="46664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTCATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTTTGAGGTGCCATTTGCTTCTGTTATCTGTGGTTCCTTTACTGCCTCTTCCTCTATCTTCACTGGAAAAATCTTTTTTCCTTTTGTAGATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATGTCGGAGGTTCATATTTTCTTCTTTTCTCTGGTAGCCCAAACAATGTGTCTTGAGAAGTTGCCTCCAGTGTGTATCACCTAATTTCAACCTTTTCAAAATCATGCAGGTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTACGTAAGTCTCTGGCGGTTTGCGAAACACAAGAAAAGCTGTGAAGTGCAAAAGACTTGTGCTATAACAGTTTGTTTTCGGTATGCAGGGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAGGTTAGTGCCTATTCTCCTGACATAGTGAAATTAGTTGCATTAGCATACTAATGCTACACAGTAACAATATTCAATTTTCTTCTCATTTTCCTTTCTATTGGATCTTTCTCCTGAGTTTTGATAATGATTTAAAGTTTTAGTCCTTGTATAAATATTGATCATTACAGTGATGCATCACTGGTCAATAGCCATTTTCCTTCTTTTTTTCCCAGTGTTTTATGACCATAAGCAGATGTTATGCATAATAAATATGGCGACATAGTTAGTATAGAAGATGTCATATATAGTTTAAAGTGACAGCATTTGACTCTCAACGTGTAGAGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAGGTATATTTCCACAGCTTCTATCCAATAGCCAACTGGAGAGTCTGTCTTCTATTTTTCTTGCTCGTTTCCTTTCTCGCAGAACATTCACTGAGGGGTGTGTGGGTGTGGGTGTAAGTAGTACTGCTGGAGAACTGCTAAAGACAGTAGTAAAGCAGCCCATCTCAATTATATCTGTACTTGGCATTATGACTAGTATTTTGTCCTGCTCCTTGATGGACCTAGTCATTCATATCACATGTTACCTAATTTTCAGTACCTCATGCTCACTACTACTACTACTTCCCCAATCCCCCCTGCAGGTTGGCTCGTCAGTAGGATAGATCACAATTTTATAAATATTTAAAGTAAATTTTGTTGGTTTTGGGTATGTGAAGGTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTGGTATGTAAACGCATTTTAGCACATTGTTCCCATAAGCACTTTCGATATGTTAATCCATGAATGAGAAAGTACTAAGAAGTTATATTTGGCAGCTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGTCACAGCATAGTTCATCTCCAACTTCATCTAAGAGTCTTTCTACCTCTTGTGAAGTTGTATGCCCACTGGATAGATACCGGTGACTCTTCTTAAAGTGAAATATTCGATCAGTATTATATAT</genome_strand>
        <mrna_strand>AGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCT-GTGCTTTGTGGGGAAAAGAAACCTTGATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTTTGAG..................................................................................ATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATGTCAGAG....................................................................................................GTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTAC.....................................................................................GGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAGCAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAG.................................................................................................................................................................................................................................................................................................................................AGAATTTCTTGTTGAAGCTGCAAGAAAGGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAATAATGGGCTAAAGGAG......................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTG............................................................................................CTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATCCAAGCTTTTCTAGCTGCTTCAAATGTCACAGCATAGTTCTTCTCCAACTTCATTTAAGAGTCTTTCTACCTCTTGTGAAGTTGTATGCCCACTGGATAGATACCGGTGACTCTTCTTAAAATGAAATATTCTATCAGTATTATAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E342000" ref_strand="+" ref_description="SGN-E342000 [cTOF-10-G2]">
      <seq>agaatttcttattgaagctgcaagaaaagttggtgtggaaggagcagctgacttccttgaagatcccaacaatgggctaaaggaggtatatttccacagcttctatccaatagccaactggagagtctgtcttctatttttcttgctcgtttcctttctcgcagaacattcactgaggggtgtgtgggtgtgggtgtaagtagtactgctggagaactgctaaagacagtagtaaagcagcccatctcaattatatctgtacttggcattatgactagtattttgtcctgctccttgatggacctagtcattcatatcacatgttacctaattttcagtacctcatgctcactactactactacttccccaatcccccctgcaggttggctcgtcagtaggatagatcacaattttataaatatttaaagtaaattttgttggttttgggtatgtgaaggtgaatgaagagcttcagcaacactcatcaaatatatcaggcgtcccacattttgtgctaaatggcaagtaccagttgagcggtggccaacctccagagagtttcatacgagcttttcaagctgcttcaaatgtcacagcatagttcatctccaacttcatctaagagtctttctacctcttgtgaagttgtatgcccactggatagataccggtgactcttcttaaagtgaaatattcgatcagtattata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="47769" stop="46367"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47469" g_stop="46954" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="516" r_length="516" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46953" i_stop="46862" i_length="92">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46861" g_stop="46667" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="711" r_length="195" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E342000" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47469" e_stop="46954"/>
          <exon e_start="46861" e_stop="46667"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAGGTATATTTCCACAGCTTCTATCCAATAGCCAACTGGAGAGTCTGTCTTCTATTTTTCTTGCTCGTTTCCTTTCTCGCAGAACATTCACTGAGGGGTGTGTGGGTGTGGGTGTAAGTAGTACTGCTGGAGAACTGCTAAAGACAGTAGTAAAGCAGCCCATCTCAATTATATCTGTACTTGGCATTATGACTAGTATTTTGTCCTGCTCCTTGATGGACCTAGTCATTCATATCACATGTTACCTAATTTTCAGTACCTCATGCTCACTACTACTACTACTTCCCCAATCCCCCCTGCAGGTTGGCTCGTCAGTAGGATAGATCACAATTTTATAAATATTTAAAGTAAATTTTGTTGGTTTTGGGTATGTGAAGGTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTGGTATGTAAACGCATTTTAGCACATTGTTCCCATAAGCACTTTCGATATGTTAATCCATGAATGAGAAAGTACTAAGAAGTTATATTTGGCAGCTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGTCACAGCATAGTTCATCTCCAACTTCATCTAAGAGTCTTTCTACCTCTTGTGAAGTTGTATGCCCACTGGATAGATACCGGTGACTCTTCTTAAAGTGAAATATTCGATCAGTATTATA</genome_strand>
        <mrna_strand>AGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAGGTATATTTCCACAGCTTCTATCCAATAGCCAACTGGAGAGTCTGTCTTCTATTTTTCTTGCTCGTTTCCTTTCTCGCAGAACATTCACTGAGGGGTGTGTGGGTGTGGGTGTAAGTAGTACTGCTGGAGAACTGCTAAAGACAGTAGTAAAGCAGCCCATCTCAATTATATCTGTACTTGGCATTATGACTAGTATTTTGTCCTGCTCCTTGATGGACCTAGTCATTCATATCACATGTTACCTAATTTTCAGTACCTCATGCTCACTACTACTACTACTTCCCCAATCCCCCCTGCAGGTTGGCTCGTCAGTAGGATAGATCACAATTTTATAAATATTTAAAGTAAATTTTGTTGGTTTTGGGTATGTGAAGGTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTG............................................................................................CTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGTCACAGCATAGTTCATCTCCAACTTCATCTAAGAGTCTTTCTACCTCTTGTGAAGTTGTATGCCCACTGGATAGATACCGGTGACTCTTCTTAAAGTGAAATATTCGATCAGTATTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E245622" ref_strand="+" ref_description="SGN-E245622 [cLEF-43-N1]">
      <seq>ttttgagattaagtggcatccgtttcttctccacccttctgcacctaaagaagggattaacaagaaagattactacagaaataagtttggatctcgctctgaacaaatgatgtcaagaatgtcggaggtttttaagggccttgggatgggatacaacatgttaggacttacgggaagtagtctggacagccacaggctactatatttcgcaggacaacaggggcttgacaagcaaaataatcttgctgaggagctttttctcggctatttcacacagggaaggtatataggtgacagagaatttcttattgaagctgcaagaaaagttggtgtggaaggagcagctgacttccttgaagatcccaacaatgggctaaaggaggtgaatgaagagcttcagcaacactcatcaaatatatcaggcgtcccacattttgtgctaaatggcaagtaccagttgagcggtggccaacctccagagagtttcatacgagcttttcaagctgcttcaaatgtcacagcatagttcatctccaacttcatctaagagtctttctacctcttgtgaagttgtatgcccactggatagataccggtgactcttcttaaagtgaaatattcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="48573" stop="46379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48354" g_stop="48348" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48347" i_stop="48266" i_length="82">
            <donor d_prob="0.361" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48265" g_stop="48146" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="127" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48145" i_stop="48046" i_length="100">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48045" g_stop="48002" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="171" r_length="44" r_score="0.955"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48001" i_stop="47917" i_length="85">
            <donor d_prob="0.000" d_score="0.95"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47916" g_stop="47791" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="297" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47790" i_stop="47470" i_length="321">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47469" g_stop="47385" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="382" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47384" i_stop="47011" i_length="374">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47010" g_stop="46954" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="439" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="46953" i_stop="46862" i_length="92">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="46861" g_stop="46679" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="622" r_length="183" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E245622" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48354" e_stop="48348"/>
          <exon e_start="48265" e_stop="48146"/>
          <exon e_start="48045" e_stop="48002"/>
          <exon e_start="47916" e_stop="47791"/>
          <exon e_start="47469" e_stop="47385"/>
          <exon e_start="47010" e_stop="46954"/>
          <exon e_start="46861" e_stop="46679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGAGGTGCCATTTGCTTCTGTTATCTGTGGTTCCTTTACTGCCTCTTCCTCTATCTTCACTGGAAAAATCTTTTTTCCTTTTGTAGATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATGTCGGAGGTTCATATTTTCTTCTTTTCTCTGGTAGCCCAAACAATGTGTCTTGAGAAGTTGCCTCCAGTGTGTATCACCTAATTTCAACCTTTTCAAAATCATGCAGGTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTACGTAAGTCTCTGGCGGTTTGCGAAACACAAGAAAAGCTGTGAAGTGCAAAAGACTTGTGCTATAACAGTTTGTTTTCGGTATGCAGGGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAGGTTAGTGCCTATTCTCCTGACATAGTGAAATTAGTTGCATTAGCATACTAATGCTACACAGTAACAATATTCAATTTTCTTCTCATTTTCCTTTCTATTGGATCTTTCTCCTGAGTTTTGATAATGATTTAAAGTTTTAGTCCTTGTATAAATATTGATCATTACAGTGATGCATCACTGGTCAATAGCCATTTTCCTTCTTTTTTTCCCAGTGTTTTATGACCATAAGCAGATGTTATGCATAATAAATATGGCGACATAGTTAGTATAGAAGATGTCATATATAGTTTAAAGTGACAGCATTTGACTCTCAACGTGTAGAGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAGGTATATTTCCACAGCTTCTATCCAATAGCCAACTGGAGAGTCTGTCTTCTATTTTTCTTGCTCGTTTCCTTTCTCGCAGAACATTCACTGAGGGGTGTGTGGGTGTGGGTGTAAGTAGTACTGCTGGAGAACTGCTAAAGACAGTAGTAAAGCAGCCCATCTCAATTATATCTGTACTTGGCATTATGACTAGTATTTTGTCCTGCTCCTTGATGGACCTAGTCATTCATATCACATGTTACCTAATTTTCAGTACCTCATGCTCACTACTACTACTACTTCCCCAATCCCCCCTGCAGGTTGGCTCGTCAGTAGGATAGATCACAATTTTATAAATATTTAAAGTAAATTTTGTTGGTTTTGGGTATGTGAAGGTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTGGTATGTAAACGCATTTTAGCACATTGTTCCCATAAGCACTTTCGATATGTTAATCCATGAATGAGAAAGTACTAAGAAGTTATATTTGGCAGCTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGTCACAGCATAGTTCATCTCCAACTTCATCTAAGAGTCTTTCTACCTCTTGTGAAGTTGTATGCCCACTGGATAGATACCGGTGACTCTTCTTAAAGTGAAATATTCG</genome_strand>
        <mrna_strand>TTTTGAG..................................................................................ATTAAGTGGCATCCGTTTCTTCTCCACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATGTCGGAG....................................................................................................GTTTTTAAGGGCCTTGGGATGGGATACAACATGTTAGGACTTAC.....................................................................................GGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAG.................................................................................................................................................................................................................................................................................................................................AGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAG......................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTG............................................................................................CTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGTCACAGCATAGTTCATCTCCAACTTCATCTAAGAGTCTTTCTACCTCTTGTGAAGTTGTATGCCCACTGGATAGATACCGGTGACTCTTCTTAAAGTGAAATATTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E546407" ref_strand="+" ref_description="SGN-E546407 [TUS-69-M3]">
      <seq>cgattaatggccaccaactgtggaaagaagtttatccgaattgatatcagttcggatactgtgtgcccctggtgctttgtggggaaaaagaaccttgataaagctatagcgttaaccagtgatcagtatgattttgagattaagtggcatccgtttcttctcaacccttctgcacctaaagaagggattaacaagaaagattactacagaaataagtttggatctcgctctgaacaaatgatgtcaagaatgtcagaggtttttaagggccttgggatggaatacaacatgtcaggacttacgggaagtagtctggacagccacaggctactatatttcgcaggacagcaggggcttgacaagcaaaataatcttgctgaggagctttttctcggctatttcacacagggaaggtatataggtgacagagaatttcttgttgaagctgcaagaaaggttggtgtggaaggagcagctgacttccttgaagatcccaataatgggctaaaggaggtgaatgaagagcttcagcaacactcatcaaatatatcaggcgtcccacattttgtgctaaatggcaagtaccagttgagcggtggccaacctccagagagtttcatccaagcttttctagctgcttcaaatgtcacagcatagttcttctccaacttcattttagagtctttctacctcttgtgaagttgtatgcccactggatagataccggtgactcttcttaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="48785" stop="46389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48485" g_stop="48348" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48347" i_stop="48266" i_length="82">
            <donor d_prob="0.361" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48265" g_stop="48146" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="258" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48145" i_stop="48046" i_length="100">
            <donor d_prob="0.932" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48045" g_stop="48002" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="302" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48001" i_stop="47917" i_length="85">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47916" g_stop="47791" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="428" r_length="126" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47790" i_stop="47470" i_length="321">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47469" g_stop="47385" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="513" r_length="85" r_score="0.965"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47384" i_stop="47011" i_length="374">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47010" g_stop="46954" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="570" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="46953" i_stop="46862" i_length="92">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="46861" g_stop="46689" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="743" r_length="173" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E546407" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546407" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48485" e_stop="48348"/>
          <exon e_start="48265" e_stop="48146"/>
          <exon e_start="48045" e_stop="48002"/>
          <exon e_start="47916" e_stop="47791"/>
          <exon e_start="47469" e_stop="47385"/>
          <exon e_start="47010" e_stop="46954"/>
          <exon e_start="46861" e_stop="46689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATTAATGGCCACCAACTGTGGAAAGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTCATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTTTGAGGTGCCATTTGCTTCTGTTATCTGTGGTTCCTTTACTGCCTCTTCCTCTATCTTCACTGGAAAAATCTTTTTTCCTTTTGTAGATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATGTCGGAGGTTCATATTTTCTTCTTTTCTCTGGTAGCCCAAACAATGTGTCTTGAGAAGTTGCCTCCAGTGTGTATCACCTAATTTCAACCTTTTCAAAATCATGCAGGTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTACGTAAGTCTCTGGCGGTTTGCGAAACACAAGAAAAGCTGTGAAGTGCAAAAGACTTGTGCTATAACAGTTTGTTTTCGGTATGCAGGGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAGGTTAGTGCCTATTCTCCTGACATAGTGAAATTAGTTGCATTAGCATACTAATGCTACACAGTAACAATATTCAATTTTCTTCTCATTTTCCTTTCTATTGGATCTTTCTCCTGAGTTTTGATAATGATTTAAAGTTTTAGTCCTTGTATAAATATTGATCATTACAGTGATGCATCACTGGTCAATAGCCATTTTCCTTCTTTTTTTCCCAGTGTTTTATGACCATAAGCAGATGTTATGCATAATAAATATGGCGACATAGTTAGTATAGAAGATGTCATATATAGTTTAAAGTGACAGCATTTGACTCTCAACGTGTAGAGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAGGTATATTTCCACAGCTTCTATCCAATAGCCAACTGGAGAGTCTGTCTTCTATTTTTCTTGCTCGTTTCCTTTCTCGCAGAACATTCACTGAGGGGTGTGTGGGTGTGGGTGTAAGTAGTACTGCTGGAGAACTGCTAAAGACAGTAGTAAAGCAGCCCATCTCAATTATATCTGTACTTGGCATTATGACTAGTATTTTGTCCTGCTCCTTGATGGACCTAGTCATTCATATCACATGTTACCTAATTTTCAGTACCTCATGCTCACTACTACTACTACTTCCCCAATCCCCCCTGCAGGTTGGCTCGTCAGTAGGATAGATCACAATTTTATAAATATTTAAAGTAAATTTTGTTGGTTTTGGGTATGTGAAGGTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTGGTATGTAAACGCATTTTAGCACATTGTTCCCATAAGCACTTTCGATATGTTAATCCATGAATGAGAAAGTACTAAGAAGTTATATTTGGCAGCTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGTCACAGCATAGTTCATCTCCAACTTCATCTAAGAGTCTTTCTACCTCTTGTGAAGTTGTATGCCCACTGGATAGATACCGGTGACTCTTCTTAAAGT</genome_strand>
        <mrna_strand>CGATTAATGGCCACCAACTGTGGAAAGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTGATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTTTGAG..................................................................................ATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATGTCAGAG....................................................................................................GTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTAC.....................................................................................GGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAGCAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAG.................................................................................................................................................................................................................................................................................................................................AGAATTTCTTGTTGAAGCTGCAAGAAAGGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAATAATGGGCTAAAGGAG......................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTG............................................................................................CTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATCCAAGCTTTTCTAGCTGCTTCAAATGTCACAGCATAGTTCTTCTCCAACTTCATTTTAGAGTCTTTCTACCTCTTGTGAAGTTGTATGCCCACTGGATAGATACCGGTGACTCTTCTTAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E276225" ref_strand="+" ref_description="SGN-E276225 [cLEN-21-H6]">
      <seq>aagaaagattactacagaaataagtttttatctcgctctgaacaaatgatgtcaagaatgtcggaggtttttaagggccttgggatggaatacaacatgtcaggacttacgggaagtagtctggacagccacaggctactatatttcgcaggacaacaggggcttgacaagcaaaataatcttgctgaggagctttttctcggctatttcacacagggaaggtatataggtgacagagaatttcttattgaagctgcaagaaaagttggtgtggaaggagcagctgacttccttgaagatcccaacaatgggctaaaggaggtgaatgaagagcttcagcaacactcatcaaatatatcaggcgtcccacattttgtgctaaatggcaagtaccagttgagcggtggccaacctccagagagtttcatacgagcttttcaagctgcttcaaatgtcacagcatagttcatctccaacttcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="48511" stop="46457"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48211" g_stop="48146" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48145" i_stop="48046" i_length="100">
            <donor d_prob="0.932" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48045" g_stop="48002" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="110" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48001" i_stop="47917" i_length="85">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47916" g_stop="47791" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="236" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47790" i_stop="47470" i_length="321">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47469" g_stop="47385" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="321" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47384" i_stop="47011" i_length="374">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47010" g_stop="46954" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="378" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="46953" i_stop="46862" i_length="92">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="46861" g_stop="46757" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="483" r_length="105" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E276225" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276225" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48211" e_stop="48146"/>
          <exon e_start="48045" e_stop="48002"/>
          <exon e_start="47916" e_stop="47791"/>
          <exon e_start="47469" e_stop="47385"/>
          <exon e_start="47010" e_stop="46954"/>
          <exon e_start="46861" e_stop="46757"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATGTCGGAGGTTCATATTTTCTTCTTTTCTCTGGTAGCCCAAACAATGTGTCTTGAGAAGTTGCCTCCAGTGTGTATCACCTAATTTCAACCTTTTCAAAATCATGCAGGTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTACGTAAGTCTCTGGCGGTTTGCGAAACACAAGAAAAGCTGTGAAGTGCAAAAGACTTGTGCTATAACAGTTTGTTTTCGGTATGCAGGGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAGGTTAGTGCCTATTCTCCTGACATAGTGAAATTAGTTGCATTAGCATACTAATGCTACACAGTAACAATATTCAATTTTCTTCTCATTTTCCTTTCTATTGGATCTTTCTCCTGAGTTTTGATAATGATTTAAAGTTTTAGTCCTTGTATAAATATTGATCATTACAGTGATGCATCACTGGTCAATAGCCATTTTCCTTCTTTTTTTCCCAGTGTTTTATGACCATAAGCAGATGTTATGCATAATAAATATGGCGACATAGTTAGTATAGAAGATGTCATATATAGTTTAAAGTGACAGCATTTGACTCTCAACGTGTAGAGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAGGTATATTTCCACAGCTTCTATCCAATAGCCAACTGGAGAGTCTGTCTTCTATTTTTCTTGCTCGTTTCCTTTCTCGCAGAACATTCACTGAGGGGTGTGTGGGTGTGGGTGTAAGTAGTACTGCTGGAGAACTGCTAAAGACAGTAGTAAAGCAGCCCATCTCAATTATATCTGTACTTGGCATTATGACTAGTATTTTGTCCTGCTCCTTGATGGACCTAGTCATTCATATCACATGTTACCTAATTTTCAGTACCTCATGCTCACTACTACTACTACTTCCCCAATCCCCCCTGCAGGTTGGCTCGTCAGTAGGATAGATCACAATTTTATAAATATTTAAAGTAAATTTTGTTGGTTTTGGGTATGTGAAGGTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTGGTATGTAAACGCATTTTAGCACATTGTTCCCATAAGCACTTTCGATATGTTAATCCATGAATGAGAAAGTACTAAGAAGTTATATTTGGCAGCTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGTCACAGCATAGTTCATCTCCAACTTCATC</genome_strand>
        <mrna_strand>AAGAAAGATTACTACAGAAATAAGTTTTTATCTCGCTCTGAACAAATGATGTCAAGAATGTCGGAG....................................................................................................GTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTAC.....................................................................................GGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAG.................................................................................................................................................................................................................................................................................................................................AGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAG......................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTG............................................................................................CTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGTCACAGCATAGTTCATCTCCAACTTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E255064" ref_strand="+" ref_description="SGN-E255064 [cLEG-31-K14]">
      <seq>tcgctctgaacaaatgatgtcaagaatgtcggaggtttttaagggccttgggatggaatacaacatgtcaggacttacgggaagtagtctggacagccacaggctactatatttcgcaggacaacaggggcttgacaagcaaaataatcttgctgaggagctttttctcggctatttcacacagggaaggtatataggtgacagagaatttcttattgaagctgcaagaaaagttggtgtggaaggagcagctgacttccttgaagatcccaacaatgggctaaaggaggtgaatgaagagcttcagcaacactcatcaaatatatcaggcgtcccacattttgtgctaaatggcaagtaccagttgagcggtggccaacctccagagagtttcatacgagcttttcaagctgcttcaaatgtcacagcatagttcatctccaacttcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="48479" stop="46457"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48179" g_stop="48146" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48145" i_stop="48046" i_length="100">
            <donor d_prob="0.932" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48045" g_stop="48002" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="78" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48001" i_stop="47917" i_length="85">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47916" g_stop="47791" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="204" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47790" i_stop="47470" i_length="321">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47469" g_stop="47385" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="289" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47384" i_stop="47011" i_length="374">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47010" g_stop="46954" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="346" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="46953" i_stop="46862" i_length="92">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="46861" g_stop="46757" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="451" r_length="105" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E255064" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48179" e_stop="48146"/>
          <exon e_start="48045" e_stop="48002"/>
          <exon e_start="47916" e_stop="47791"/>
          <exon e_start="47469" e_stop="47385"/>
          <exon e_start="47010" e_stop="46954"/>
          <exon e_start="46861" e_stop="46757"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCTCTGAACAAATGATGTCAAGAATGTCGGAGGTTCATATTTTCTTCTTTTCTCTGGTAGCCCAAACAATGTGTCTTGAGAAGTTGCCTCCAGTGTGTATCACCTAATTTCAACCTTTTCAAAATCATGCAGGTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTACGTAAGTCTCTGGCGGTTTGCGAAACACAAGAAAAGCTGTGAAGTGCAAAAGACTTGTGCTATAACAGTTTGTTTTCGGTATGCAGGGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAGGTTAGTGCCTATTCTCCTGACATAGTGAAATTAGTTGCATTAGCATACTAATGCTACACAGTAACAATATTCAATTTTCTTCTCATTTTCCTTTCTATTGGATCTTTCTCCTGAGTTTTGATAATGATTTAAAGTTTTAGTCCTTGTATAAATATTGATCATTACAGTGATGCATCACTGGTCAATAGCCATTTTCCTTCTTTTTTTCCCAGTGTTTTATGACCATAAGCAGATGTTATGCATAATAAATATGGCGACATAGTTAGTATAGAAGATGTCATATATAGTTTAAAGTGACAGCATTTGACTCTCAACGTGTAGAGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAGGTATATTTCCACAGCTTCTATCCAATAGCCAACTGGAGAGTCTGTCTTCTATTTTTCTTGCTCGTTTCCTTTCTCGCAGAACATTCACTGAGGGGTGTGTGGGTGTGGGTGTAAGTAGTACTGCTGGAGAACTGCTAAAGACAGTAGTAAAGCAGCCCATCTCAATTATATCTGTACTTGGCATTATGACTAGTATTTTGTCCTGCTCCTTGATGGACCTAGTCATTCATATCACATGTTACCTAATTTTCAGTACCTCATGCTCACTACTACTACTACTTCCCCAATCCCCCCTGCAGGTTGGCTCGTCAGTAGGATAGATCACAATTTTATAAATATTTAAAGTAAATTTTGTTGGTTTTGGGTATGTGAAGGTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTGGTATGTAAACGCATTTTAGCACATTGTTCCCATAAGCACTTTCGATATGTTAATCCATGAATGAGAAAGTACTAAGAAGTTATATTTGGCAGCTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGTCACAGCATAGTTCATCTCCAACTTCATC</genome_strand>
        <mrna_strand>TCGCTCTGAACAAATGATGTCAAGAATGTCGGAG....................................................................................................GTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTAC.....................................................................................GGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAG.................................................................................................................................................................................................................................................................................................................................AGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAG......................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTG............................................................................................CTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGTCACAGCATAGTTCATCTCCAACTTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E619425" ref_strand="+" ref_description="SGN-E619425 [70114]">
      <seq>atttatatgctttcattgaatctccgaaaattcctaatttctccgaggttcctgcatcgattaatggccaccaacagtggaaagaagtttatccgaattgatatcagttcggatactgtgtgcccctggtgctttgtggggaaaaagaaccttgataaagctatagcgttaaccagtgatcagtatgattttgagattaagtggcatccgtttcttctcaacccttctgcacctaaagaagggattaacaagaaagattactacagaaataagtttggatctcgctctgaacaaatgatgtcaagaatgtcagaggtttttaagggccttgggctggaatacagcatgtcaggacttacgggaagtagtctggacagccacaggctactatattttgcaggacaacaggggcttgacaagcaaaataatcttgctgaggagctttttcttggctatttcacacagggaaggtatataggtgacagggaatttcttatcgaagctgcaagaaaggtcggtatagaaggagcagctgacttccttgaagatcccaacaatgggctaaaggaggtgaatgaagagcttcagcaacactcatccaatatatcaggcgtcccacattttgtgttacatggcaagtaccagttgagcggtggccaactccagagagcttcatccaagcttttcaagctgcttcaaatgtcacaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="49510" stop="46480"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49210" g_stop="49164" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49163" i_stop="48496" i_length="668">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.891" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48495" g_stop="48348" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="195" r_length="148" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48347" i_stop="48266" i_length="82">
            <donor d_prob="0.361" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48265" g_stop="48146" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="315" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48145" i_stop="48046" i_length="100">
            <donor d_prob="0.932" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48045" g_stop="48002" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="359" r_length="44" r_score="0.955"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48001" i_stop="47917" i_length="85">
            <donor d_prob="0.000" d_score="0.95"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47916" g_stop="47791" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="485" r_length="126" r_score="0.984"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47790" i_stop="47470" i_length="321">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.871" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47469" g_stop="47385" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="570" r_length="85" r_score="0.929"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="47384" i_stop="47011" i_length="374">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47010" g_stop="46954" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="627" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="46953" i_stop="46862" i_length="92">
            <donor d_prob="0.952" d_score="0.98"/>
            <acceptor a_prob="0.857" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="46861" g_stop="46781" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="707" r_length="80" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E619425" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E619425" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49210" e_stop="49164"/>
          <exon e_start="48495" e_stop="48348"/>
          <exon e_start="48265" e_stop="48146"/>
          <exon e_start="48045" e_stop="48002"/>
          <exon e_start="47916" e_stop="47791"/>
          <exon e_start="47469" e_stop="47385"/>
          <exon e_start="47010" e_stop="46954"/>
          <exon e_start="46861" e_stop="46781"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATATGCTTCCATTGAATCTCCGAAAATTCCTAATTTCTTCGAGGTAACACTTTTCTTTTTAATTTGCTAATTTCTCACTGGTTTATGCGTTAAATAATGGGGTTCTGTTAAATATCAAGATTTAATTTAGTTTTCCTTTTGATGAATTTGTTCCCATTTTTTAAAGTGGAATACTCAGAAAAACTGAAGCTTTGATGATATGTTCTGTTTGACCTTTTTAAATAGTTACTTGAAATCCTGTTTTTTACAAGTCAACATTTTTTCTTGGGGATAGGAATTGGGGTTCTTGAGATTTTCATTTTTGATCAAAGATATTGTGATAGAATCGACTTAAATTTAACCTTAGGGATATAGCCAATTCTTGAATTAAGATTCCGTGGTATCAAAATGAATGTACGGTTCGAGTTGAAAACAATGGGTGCAGTCACCTATAGGCTATATATCGATTCTGATTTGGGAACTGCTAGTATTAGAATATTAGAATCTATTGACTATATACATAAATTTTAAAGAGGATTAATTGATATATGGATGTGATTTCTTATCTTGAATTTGACAATGCTGATTTTGCAACTTTTAAGGGAAAATGAAGTGAAAAATATTCTTAACTGATGACATCTGTACTTTATTCTAGTAAATGATTTATTTTGTATAACAGGAAAACAGAATGAGGCTAGTTAAGATGACTTGTTTGTGAATGTGTATAATCAGGTTCCTGCATCGATTAATGGCCACCAACTGTGGAAAGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTCATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTTTGAGGTGCCATTTGCTTCTGTTATCTGTGGTTCCTTTACTGCCTCTTCCTCTATCTTCACTGGAAAAATCTTTTTTCCTTTTGTAGATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATGTCGGAGGTTCATATTTTCTTCTTTTCTCTGGTAGCCCAAACAATGTGTCTTGAGAAGTTGCCTCCAGTGTGTATCACCTAATTTCAACCTTTTCAAAATCATGCAGGTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTACGTAAGTCTCTGGCGGTTTGCGAAACACAAGAAAAGCTGTGAAGTGCAAAAGACTTGTGCTATAACAGTTTGTTTTCGGTATGCAGGGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAGGTTAGTGCCTATTCTCCTGACATAGTGAAATTAGTTGCATTAGCATACTAATGCTACACAGTAACAATATTCAATTTTCTTCTCATTTTCCTTTCTATTGGATCTTTCTCCTGAGTTTTGATAATGATTTAAAGTTTTAGTCCTTGTATAAATATTGATCATTACAGTGATGCATCACTGGTCAATAGCCATTTTCCTTCTTTTTTTCCCAGTGTTTTATGACCATAAGCAGATGTTATGCATAATAAATATGGCGACATAGTTAGTATAGAAGATGTCATATATAGTTTAAAGTGACAGCATTTGACTCTCAACGTGTAGAGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAGGTATATTTCCACAGCTTCTATCCAATAGCCAACTGGAGAGTCTGTCTTCTATTTTTCTTGCTCGTTTCCTTTCTCGCAGAACATTCACTGAGGGGTGTGTGGGTGTGGGTGTAAGTAGTACTGCTGGAGAACTGCTAAAGACAGTAGTAAAGCAGCCCATCTCAATTATATCTGTACTTGGCATTATGACTAGTATTTTGTCCTGCTCCTTGATGGACCTAGTCATTCATATCACATGTTACCTAATTTTCAGTACCTCATGCTCACTACTACTACTACTTCCCCAATCCCCCCTGCAGGTTGGCTCGTCAGTAGGATAGATCACAATTTTATAAATATTTAAAGTAAATTTTGTTGGTTTTGGGTATGTGAAGGTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTGGTATGTAAACGCATTTTAGCACATTGTTCCCATAAGCACTTTCGATATGTTAATCCATGAATGAGAAAGTACTAAGAAGTTATATTTGGCAGCTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGTCACA</genome_strand>
        <mrna_strand>ATTTATATGCTTTCATTGAATCTCCGAAAATTCCTAATTTCTCCGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTGCATCGATTAATGGCCACCAACAGTGGAAAGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTGATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTTTGAG..................................................................................ATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATGTCAGAG....................................................................................................GTTTTTAAGGGCCTTGGGCTGGAATACAGCATGTCAGGACTTAC.....................................................................................GGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTTGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTTGGCTATTTCACACAGGGAAGGTATATAGGTGACAG.................................................................................................................................................................................................................................................................................................................................GGAATTTCTTATCGAAGCTGCAAGAAAGGTCGGTATAGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAG......................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAAGAGCTTCAGCAACACTCATCCAATATATCAGGCGTCCCACATTTTGTG............................................................................................TTACATGGCAAGTACCAGTTGAGCGGTGGCCAA-CTCCAGAGAGCTTCATCCAAGCTTTTCAAGCTGCTTCAAATGTCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E257796" ref_strand="+" ref_description="SGN-E257796 [cLEG-39-G13]">
      <seq>tcgctctgaacaaatgatgtcaagaatgtccgaggtttttaacggccttgggatggaatacaacatgtcaggacttactggaagtaatctggacagccacaggctactatatttcgcaggacaacaggggcttgacaagcaaaataatcttgctgaggagctttttctcggctatttcacacagggaaggtatataggtgacagagaatttcttattgaagctgcaagaaaagttggtgtggaaggagcagctgacttccttgaagatcccaacaatgggctaaaggaggtgaatgaagagcttcagcaacactcatcaaatatatcaagcgtcccacattttgtgctaaaaggcaagtaccagttgagcggtggccaacctccaaagagtttcatacgagcttttcaagctgcttcaaatgtcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="48479" stop="46481"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48179" g_stop="48146" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48145" i_stop="48046" i_length="100">
            <donor d_prob="0.932" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48045" g_stop="48002" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="78" r_length="44" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48001" i_stop="47917" i_length="85">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47916" g_stop="47791" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="204" r_length="126" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47790" i_stop="47470" i_length="321">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47469" g_stop="47385" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="289" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47384" i_stop="47011" i_length="374">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47010" g_stop="46954" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="346" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="46953" i_stop="46862" i_length="92">
            <donor d_prob="0.952" d_score="0.98"/>
            <acceptor a_prob="0.857" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="46861" g_stop="46781" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="427" r_length="81" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E257796" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257796" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48179" e_stop="48146"/>
          <exon e_start="48045" e_stop="48002"/>
          <exon e_start="47916" e_stop="47791"/>
          <exon e_start="47469" e_stop="47385"/>
          <exon e_start="47010" e_stop="46954"/>
          <exon e_start="46861" e_stop="46781"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCTCTGAACAAATGATGTCAAGAATGTCGGAGGTTCATATTTTCTTCTTTTCTCTGGTAGCCCAAACAATGTGTCTTGAGAAGTTGCCTCCAGTGTGTATCACCTAATTTCAACCTTTTCAAAATCATGCAGGTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTACGTAAGTCTCTGGCGGTTTGCGAAACACAAGAAAAGCTGTGAAGTGCAAAAGACTTGTGCTATAACAGTTTGTTTTCGGTATGCAGGGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAGGTTAGTGCCTATTCTCCTGACATAGTGAAATTAGTTGCATTAGCATACTAATGCTACACAGTAACAATATTCAATTTTCTTCTCATTTTCCTTTCTATTGGATCTTTCTCCTGAGTTTTGATAATGATTTAAAGTTTTAGTCCTTGTATAAATATTGATCATTACAGTGATGCATCACTGGTCAATAGCCATTTTCCTTCTTTTTTTCCCAGTGTTTTATGACCATAAGCAGATGTTATGCATAATAAATATGGCGACATAGTTAGTATAGAAGATGTCATATATAGTTTAAAGTGACAGCATTTGACTCTCAACGTGTAGAGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAGGTATATTTCCACAGCTTCTATCCAATAGCCAACTGGAGAGTCTGTCTTCTATTTTTCTTGCTCGTTTCCTTTCTCGCAGAACATTCACTGAGGGGTGTGTGGGTGTGGGTGTAAGTAGTACTGCTGGAGAACTGCTAAAGACAGTAGTAAAGCAGCCCATCTCAATTATATCTGTACTTGGCATTATGACTAGTATTTTGTCCTGCTCCTTGATGGACCTAGTCATTCATATCACATGTTACCTAATTTTCAGTACCTCATGCTCACTACTACTACTACTTCCCCAATCCCCCCTGCAGGTTGGCTCGTCAGTAGGATAGATCACAATTTTATAAATATTTAAAGTAAATTTTGTTGGTTTTGGGTATGTGAAGGTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTGGTATGTAAACGCATTTTAGCACATTGTTCCCATAAGCACTTTCGATATGTTAATCCATGAATGAGAAAGTACTAAGAAGTTATATTTGGCAGCTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGTCACA</genome_strand>
        <mrna_strand>TCGCTCTGAACAAATGATGTCAAGAATGTCCGAG....................................................................................................GTTTTTAACGGCCTTGGGATGGAATACAACATGTCAGGACTTAC.....................................................................................TGGAAGTAATCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAG.................................................................................................................................................................................................................................................................................................................................AGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAG......................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAAGCGTCCCACATTTTGTG............................................................................................CTAAAAGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAAAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGTCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E543266" ref_strand="+" ref_description="SGN-E543266 [TUS-64-P22]">
      <seq>ctcctaaatttttacccttttttcctaaaaaaaatttgttcctattcaagatttgatttcagaagaagcaaattctggttaaggccccaaaagagtctttcctaatttatatgcttccattgaatctccgaaaattcctaatttcttcgaggttcctgcatcgattaatggccaccaactgtggaaagaagtttatccgaattgatatcagttcggatactgtgtgcccctggtgctttgtggggaaaaagaaccttcataaagctatagcgttaaccagtgatcagtatgattttgagattaagtggcatccgtttcttctcaacccttctgcacctaaagaagggattaacaagaaagattactacagaaataagtttggatctcgctctgaacaaatgatgtcaagaatgtcggaggtttttaagggccttgggatggaatacaacatgtcaggacttacgggaagtagtctggacagccacaggctactatatttcgcaggacaacaggggcttgacaagcaaaataatcttgctgaggagctttttctcggctatttcacacagggaaggtatataggtgacagagaatttcttattgaagctgcaagaaaagttggtgtggaaggagcagctgacttccttgaagatcccaacaatgggctaaaggaggtgaatgaagagcttcagcaacactcatcaaatatatcaggcgtcccacattttgtgctnaatggcaagtaccagttgagcggtggccaacctcccagagagttcatancggagctttcagctgcttcaaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="49614" stop="46485"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49314" g_stop="49164" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49163" i_stop="48496" i_length="668">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48495" g_stop="48348" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="299" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48347" i_stop="48266" i_length="82">
            <donor d_prob="0.361" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48265" g_stop="48146" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="419" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48145" i_stop="48046" i_length="100">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48045" g_stop="48002" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="463" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48001" i_stop="47917" i_length="85">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47916" g_stop="47791" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="589" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47790" i_stop="47470" i_length="321">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47469" g_stop="47385" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="674" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="47384" i_stop="47011" i_length="374">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47010" g_stop="46954" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="675" r_stop="731" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="46953" i_stop="46862" i_length="92">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="46861" g_stop="46785" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="732" r_stop="808" r_length="77" r_score="0.844"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E543266" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543266" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49314" e_stop="49164"/>
          <exon e_start="48495" e_stop="48348"/>
          <exon e_start="48265" e_stop="48146"/>
          <exon e_start="48045" e_stop="48002"/>
          <exon e_start="47916" e_stop="47791"/>
          <exon e_start="47469" e_stop="47385"/>
          <exon e_start="47010" e_stop="46954"/>
          <exon e_start="46861" e_stop="46785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTAAATTTTTACCCTTTTTTCCTAAAAAAAATTTGTTCCTATTCAAGATTTGATTTCAGAAGAAGCAAATTCTGGTTAAGGCCCCAAAAGAGTCTTTCCTAATTTATATGCTTCCATTGAATCTCCGAAAATTCCTAATTTCTTCGAGGTAACACTTTTCTTTTTAATTTGCTAATTTCTCACTGGTTTATGCGTTAAATAATGGGGTTCTGTTAAATATCAAGATTTAATTTAGTTTTCCTTTTGATGAATTTGTTCCCATTTTTTAAAGTGGAATACTCAGAAAAACTGAAGCTTTGATGATATGTTCTGTTTGACCTTTTTAAATAGTTACTTGAAATCCTGTTTTTTACAAGTCAACATTTTTTCTTGGGGATAGGAATTGGGGTTCTTGAGATTTTCATTTTTGATCAAAGATATTGTGATAGAATCGACTTAAATTTAACCTTAGGGATATAGCCAATTCTTGAATTAAGATTCCGTGGTATCAAAATGAATGTACGGTTCGAGTTGAAAACAATGGGTGCAGTCACCTATAGGCTATATATCGATTCTGATTTGGGAACTGCTAGTATTAGAATATTAGAATCTATTGACTATATACATAAATTTTAAAGAGGATTAATTGATATATGGATGTGATTTCTTATCTTGAATTTGACAATGCTGATTTTGCAACTTTTAAGGGAAAATGAAGTGAAAAATATTCTTAACTGATGACATCTGTACTTTATTCTAGTAAATGATTTATTTTGTATAACAGGAAAACAGAATGAGGCTAGTTAAGATGACTTGTTTGTGAATGTGTATAATCAGGTTCCTGCATCGATTAATGGCCACCAACTGTGGAAAGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTCATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTTTGAGGTGCCATTTGCTTCTGTTATCTGTGGTTCCTTTACTGCCTCTTCCTCTATCTTCACTGGAAAAATCTTTTTTCCTTTTGTAGATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATGTCGGAGGTTCATATTTTCTTCTTTTCTCTGGTAGCCCAAACAATGTGTCTTGAGAAGTTGCCTCCAGTGTGTATCACCTAATTTCAACCTTTTCAAAATCATGCAGGTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTACGTAAGTCTCTGGCGGTTTGCGAAACACAAGAAAAGCTGTGAAGTGCAAAAGACTTGTGCTATAACAGTTTGTTTTCGGTATGCAGGGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAGGTTAGTGCCTATTCTCCTGACATAGTGAAATTAGTTGCATTAGCATACTAATGCTACACAGTAACAATATTCAATTTTCTTCTCATTTTCCTTTCTATTGGATCTTTCTCCTGAGTTTTGATAATGATTTAAAGTTTTAGTCCTTGTATAAATATTGATCATTACAGTGATGCATCACTGGTCAATAGCCATTTTCCTTCTTTTTTTCCCAGTGTTTTATGACCATAAGCAGATGTTATGCATAATAAATATGGCGACATAGTTAGTATAGAAGATGTCATATATAGTTTAAAGTGACAGCATTTGACTCTCAACGTGTAGAGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAGGTATATTTCCACAGCTTCTATCCAATAGCCAACTGGAGAGTCTGTCTTCTATTTTTCTTGCTCGTTTCCTTTCTCGCAGAACATTCACTGAGGGGTGTGTGGGTGTGGGTGTAAGTAGTACTGCTGGAGAACTGCTAAAGACAGTAGTAAAGCAGCCCATCTCAATTATATCTGTACTTGGCATTATGACTAGTATTTTGTCCTGCTCCTTGATGGACCTAGTCATTCATATCACATGTTACCTAATTTTCAGTACCTCATGCTCACTACTACTACTACTTCCCCAATCCCCCCTGCAGGTTGGCTCGTCAGTAGGATAGATCACAATTTTATAAATATTTAAAGTAAATTTTGTTGGTTTTGGGTATGTGAAGGTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTGGTATGTAAACGCATTTTAGCACATTGTTCCCATAAGCACTTTCGATATGTTAATCCATGAATGAGAAAGTACTAAGAAGTTATATTTGGCAGCTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCT-CCAGAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGT</genome_strand>
        <mrna_strand>CTCCTAAATTTTTACCCTTTTTTCCTAAAAAAAATTTGTTCCTATTCAAGATTTGATTTCAGAAGAAGCAAATTCTGGTTAAGGCCCCAAAAGAGTCTTTCCTAATTTATATGCTTCCATTGAATCTCCGAAAATTCCTAATTTCTTCGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTGCATCGATTAATGGCCACCAACTGTGGAAAGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTCATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTTTGAG..................................................................................ATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATGTCGGAG....................................................................................................GTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTAC.....................................................................................GGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAG.................................................................................................................................................................................................................................................................................................................................AGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAG......................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTG............................................................................................CTNAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCCAGAGAG-TTCATANCGGAGCTTTCAGCTGCTTCAAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E373685" ref_strand="+" ref_description="SGN-E373685 [TUS-33-G6]">
      <seq>tccgaaaattcctaatttcttcgaggttcctgcatcgattaatggccaccaactgtggaaagaagtttatccgaattgatatcagttcggatactgtgtgcccctggtgctttgtggggaaaaagaaccttcataaagctatagcgttaaccagtgatcagtatgattttgagattaagtggcatccgtttcttctcaacccttctgcacctaaagaagggattaacaagaaagattactacagaaataagtttggatctcgctctgaacaaatgatgtcaagaatgtcggaggtttttaagggccttgggatggaatacaacatgtcaggacttacgggaagtagtctggacagccacaggctactatatttcgcaggacaacaggggcttgacaagcaaaataatcttgctgaggagctttttctcggctatttcacacagggaaggtatataggtgacagagaatttcttattgaagctgcaagaaaagttggtgtggaaggagcagctgacttccttgaagatcccaacaatgggctaaaggaggtgaatgaagagcttcagcaacactcatcaaatatatcaggcgtcccacattttgtgctaaatggcaagtaccagttgagcggtggccaacctccagagagtttcatacgagcttttcaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="49488" stop="46497"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49188" g_stop="49164" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49163" i_stop="48496" i_length="668">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.891" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48495" g_stop="48348" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="173" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48347" i_stop="48266" i_length="82">
            <donor d_prob="0.361" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48265" g_stop="48146" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="293" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48145" i_stop="48046" i_length="100">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48045" g_stop="48002" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="337" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48001" i_stop="47917" i_length="85">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47916" g_stop="47791" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="463" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47790" i_stop="47470" i_length="321">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47469" g_stop="47385" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="548" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="47384" i_stop="47011" i_length="374">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47010" g_stop="46954" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="605" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="46953" i_stop="46862" i_length="92">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="46861" g_stop="46797" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="606" r_stop="670" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E373685" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373685" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49188" e_stop="49164"/>
          <exon e_start="48495" e_stop="48348"/>
          <exon e_start="48265" e_stop="48146"/>
          <exon e_start="48045" e_stop="48002"/>
          <exon e_start="47916" e_stop="47791"/>
          <exon e_start="47469" e_stop="47385"/>
          <exon e_start="47010" e_stop="46954"/>
          <exon e_start="46861" e_stop="46797"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGAAAATTCCTAATTTCTTCGAGGTAACACTTTTCTTTTTAATTTGCTAATTTCTCACTGGTTTATGCGTTAAATAATGGGGTTCTGTTAAATATCAAGATTTAATTTAGTTTTCCTTTTGATGAATTTGTTCCCATTTTTTAAAGTGGAATACTCAGAAAAACTGAAGCTTTGATGATATGTTCTGTTTGACCTTTTTAAATAGTTACTTGAAATCCTGTTTTTTACAAGTCAACATTTTTTCTTGGGGATAGGAATTGGGGTTCTTGAGATTTTCATTTTTGATCAAAGATATTGTGATAGAATCGACTTAAATTTAACCTTAGGGATATAGCCAATTCTTGAATTAAGATTCCGTGGTATCAAAATGAATGTACGGTTCGAGTTGAAAACAATGGGTGCAGTCACCTATAGGCTATATATCGATTCTGATTTGGGAACTGCTAGTATTAGAATATTAGAATCTATTGACTATATACATAAATTTTAAAGAGGATTAATTGATATATGGATGTGATTTCTTATCTTGAATTTGACAATGCTGATTTTGCAACTTTTAAGGGAAAATGAAGTGAAAAATATTCTTAACTGATGACATCTGTACTTTATTCTAGTAAATGATTTATTTTGTATAACAGGAAAACAGAATGAGGCTAGTTAAGATGACTTGTTTGTGAATGTGTATAATCAGGTTCCTGCATCGATTAATGGCCACCAACTGTGGAAAGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTCATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTTTGAGGTGCCATTTGCTTCTGTTATCTGTGGTTCCTTTACTGCCTCTTCCTCTATCTTCACTGGAAAAATCTTTTTTCCTTTTGTAGATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATGTCGGAGGTTCATATTTTCTTCTTTTCTCTGGTAGCCCAAACAATGTGTCTTGAGAAGTTGCCTCCAGTGTGTATCACCTAATTTCAACCTTTTCAAAATCATGCAGGTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTACGTAAGTCTCTGGCGGTTTGCGAAACACAAGAAAAGCTGTGAAGTGCAAAAGACTTGTGCTATAACAGTTTGTTTTCGGTATGCAGGGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAGGTTAGTGCCTATTCTCCTGACATAGTGAAATTAGTTGCATTAGCATACTAATGCTACACAGTAACAATATTCAATTTTCTTCTCATTTTCCTTTCTATTGGATCTTTCTCCTGAGTTTTGATAATGATTTAAAGTTTTAGTCCTTGTATAAATATTGATCATTACAGTGATGCATCACTGGTCAATAGCCATTTTCCTTCTTTTTTTCCCAGTGTTTTATGACCATAAGCAGATGTTATGCATAATAAATATGGCGACATAGTTAGTATAGAAGATGTCATATATAGTTTAAAGTGACAGCATTTGACTCTCAACGTGTAGAGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAGGTATATTTCCACAGCTTCTATCCAATAGCCAACTGGAGAGTCTGTCTTCTATTTTTCTTGCTCGTTTCCTTTCTCGCAGAACATTCACTGAGGGGTGTGTGGGTGTGGGTGTAAGTAGTACTGCTGGAGAACTGCTAAAGACAGTAGTAAAGCAGCCCATCTCAATTATATCTGTACTTGGCATTATGACTAGTATTTTGTCCTGCTCCTTGATGGACCTAGTCATTCATATCACATGTTACCTAATTTTCAGTACCTCATGCTCACTACTACTACTACTTCCCCAATCCCCCCTGCAGGTTGGCTCGTCAGTAGGATAGATCACAATTTTATAAATATTTAAAGTAAATTTTGTTGGTTTTGGGTATGTGAAGGTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTGGTATGTAAACGCATTTTAGCACATTGTTCCCATAAGCACTTTCGATATGTTAATCCATGAATGAGAAAGTACTAAGAAGTTATATTTGGCAGCTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGC</genome_strand>
        <mrna_strand>TCCGAAAATTCCTAATTTCTTCGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTGCATCGATTAATGGCCACCAACTGTGGAAAGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTCATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTTTGAG..................................................................................ATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATGTCGGAG....................................................................................................GTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTAC.....................................................................................GGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAG.................................................................................................................................................................................................................................................................................................................................AGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAG......................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTG............................................................................................CTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E252848" ref_strand="+" ref_description="SGN-E252848 [cLEG-16-I10]">
      <seq>atttgttcctattcaagatttgatttcagaagaagcaaattctggttaaggccccaaaagagtctttcctaatttatatgcttccattgaatctccgaaaattcctaatttcttcgaggttcctgcatcgattaatggccaccaactgtggaaagaagtttatccgaattgatatcagttcggatactgtgtgcccctggtgctttgtggggaaaaagaaccttcataaagctatagcgttaaccagtgatcagtatgattttgagattaagtggcatccgtttcttctcaacccttctgcacctaaagaagggattaacaagaaagattactacagaaataagtttggatctcgctctgaacaaatgatgtcaagaatgtcggaggtttttaagggccttgggatggaatacaacatgtcaggacttacgggaagtagtctggacagccacaggctactatatttcgcaggacaacaggggcttgacaagcaaaataatcttgctgaggagctttttctcggctatttcacacagggaaggtatataggtgacagagaatttcttattgaagctgcaagaaaagttggtgtggaaggagcagctgacttccttgaagatcccaacaatgggctaaaggaggtgaatgaagagcttcagcaacactcatcaaatatatcaggcgtcccacattttgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="49581" stop="46654"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49281" g_stop="49164" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49163" i_stop="48496" i_length="668">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48495" g_stop="48348" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="266" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48347" i_stop="48266" i_length="82">
            <donor d_prob="0.361" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48265" g_stop="48146" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="386" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48145" i_stop="48046" i_length="100">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48045" g_stop="48002" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="430" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48001" i_stop="47917" i_length="85">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47916" g_stop="47791" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="556" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47790" i_stop="47470" i_length="321">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47469" g_stop="47385" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="641" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="47384" i_stop="47011" i_length="374">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47010" g_stop="46954" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="698" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E252848" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E252848" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49281" e_stop="49164"/>
          <exon e_start="48495" e_stop="48348"/>
          <exon e_start="48265" e_stop="48146"/>
          <exon e_start="48045" e_stop="48002"/>
          <exon e_start="47916" e_stop="47791"/>
          <exon e_start="47469" e_stop="47385"/>
          <exon e_start="47010" e_stop="46954"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTTCCTATTCAAGATTTGATTTCAGAAGAAGCAAATTCTGGTTAAGGCCCCAAAAGAGTCTTTCCTAATTTATATGCTTCCATTGAATCTCCGAAAATTCCTAATTTCTTCGAGGTAACACTTTTCTTTTTAATTTGCTAATTTCTCACTGGTTTATGCGTTAAATAATGGGGTTCTGTTAAATATCAAGATTTAATTTAGTTTTCCTTTTGATGAATTTGTTCCCATTTTTTAAAGTGGAATACTCAGAAAAACTGAAGCTTTGATGATATGTTCTGTTTGACCTTTTTAAATAGTTACTTGAAATCCTGTTTTTTACAAGTCAACATTTTTTCTTGGGGATAGGAATTGGGGTTCTTGAGATTTTCATTTTTGATCAAAGATATTGTGATAGAATCGACTTAAATTTAACCTTAGGGATATAGCCAATTCTTGAATTAAGATTCCGTGGTATCAAAATGAATGTACGGTTCGAGTTGAAAACAATGGGTGCAGTCACCTATAGGCTATATATCGATTCTGATTTGGGAACTGCTAGTATTAGAATATTAGAATCTATTGACTATATACATAAATTTTAAAGAGGATTAATTGATATATGGATGTGATTTCTTATCTTGAATTTGACAATGCTGATTTTGCAACTTTTAAGGGAAAATGAAGTGAAAAATATTCTTAACTGATGACATCTGTACTTTATTCTAGTAAATGATTTATTTTGTATAACAGGAAAACAGAATGAGGCTAGTTAAGATGACTTGTTTGTGAATGTGTATAATCAGGTTCCTGCATCGATTAATGGCCACCAACTGTGGAAAGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTCATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTTTGAGGTGCCATTTGCTTCTGTTATCTGTGGTTCCTTTACTGCCTCTTCCTCTATCTTCACTGGAAAAATCTTTTTTCCTTTTGTAGATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATGTCGGAGGTTCATATTTTCTTCTTTTCTCTGGTAGCCCAAACAATGTGTCTTGAGAAGTTGCCTCCAGTGTGTATCACCTAATTTCAACCTTTTCAAAATCATGCAGGTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTACGTAAGTCTCTGGCGGTTTGCGAAACACAAGAAAAGCTGTGAAGTGCAAAAGACTTGTGCTATAACAGTTTGTTTTCGGTATGCAGGGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAGGTTAGTGCCTATTCTCCTGACATAGTGAAATTAGTTGCATTAGCATACTAATGCTACACAGTAACAATATTCAATTTTCTTCTCATTTTCCTTTCTATTGGATCTTTCTCCTGAGTTTTGATAATGATTTAAAGTTTTAGTCCTTGTATAAATATTGATCATTACAGTGATGCATCACTGGTCAATAGCCATTTTCCTTCTTTTTTTCCCAGTGTTTTATGACCATAAGCAGATGTTATGCATAATAAATATGGCGACATAGTTAGTATAGAAGATGTCATATATAGTTTAAAGTGACAGCATTTGACTCTCAACGTGTAGAGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAGGTATATTTCCACAGCTTCTATCCAATAGCCAACTGGAGAGTCTGTCTTCTATTTTTCTTGCTCGTTTCCTTTCTCGCAGAACATTCACTGAGGGGTGTGTGGGTGTGGGTGTAAGTAGTACTGCTGGAGAACTGCTAAAGACAGTAGTAAAGCAGCCCATCTCAATTATATCTGTACTTGGCATTATGACTAGTATTTTGTCCTGCTCCTTGATGGACCTAGTCATTCATATCACATGTTACCTAATTTTCAGTACCTCATGCTCACTACTACTACTACTTCCCCAATCCCCCCTGCAGGTTGGCTCGTCAGTAGGATAGATCACAATTTTATAAATATTTAAAGTAAATTTTGTTGGTTTTGGGTATGTGAAGGTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTG</genome_strand>
        <mrna_strand>ATTTGTTCCTATTCAAGATTTGATTTCAGAAGAAGCAAATTCTGGTTAAGGCCCCAAAAGAGTCTTTCCTAATTTATATGCTTCCATTGAATCTCCGAAAATTCCTAATTTCTTCGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTGCATCGATTAATGGCCACCAACTGTGGAAAGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTCATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTTTGAG..................................................................................ATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATGTCGGAG....................................................................................................GTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTAC.....................................................................................GGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAG.................................................................................................................................................................................................................................................................................................................................AGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAG......................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E461699" ref_strand="+" ref_description="SGN-E461699 [cPRO-9-E22]">
      <seq>aaactaatcaagatttaagaagaataagaagaggcaaattctggttacggcccaaaagagtctttcctaatttatatgctttcattgaatctccgaaaaatcctaatttctccgaggttcctgcatcgattaatggccaccaacagtggaaagaagtttatccgaattgatatcagttcggatactgtgtgcccctggtgctttgtggggaaaaagaaccttgataaagctatagcgttaaccagtgatcagtatgattttgagattaagtggcatccgtttcttctcaacccatctgcacctaaagaagggattaacaagaaaaattactacagaaataagtttggatctcgctctgaacaaatgatgtcaagaatgtcagaggtttttaagggtcttgggctggaatacaacatgtcaggacttacgggaagtagtctggacagccacaggctactatattttgcaggacaacaggggcctgacaagcaaaataatcttgctgaggagctttttcttggctatttcacacagggaaggtatataggtgacagggaatttcttatcgaagctgcaagaaaggtcggtatagaaggagcagctgacttccttgaagatccccaacatgggctaaaggaggtgaatgaagagcttcagcaacactcatccaatatatcaggcgtcccacattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="49556" stop="46658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49252" g_stop="49164" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="116" r_length="88" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49163" i_stop="48496" i_length="668">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.891" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48495" g_stop="48348" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="264" r_length="148" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48347" i_stop="48266" i_length="82">
            <donor d_prob="0.361" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48265" g_stop="48146" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="384" r_length="120" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48145" i_stop="48046" i_length="100">
            <donor d_prob="0.932" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48045" g_stop="48002" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="428" r_length="44" r_score="0.955"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48001" i_stop="47917" i_length="85">
            <donor d_prob="0.000" d_score="0.95"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47916" g_stop="47791" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="554" r_length="126" r_score="0.976"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47790" i_stop="47470" i_length="321">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.871" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47469" g_stop="47385" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="639" r_length="85" r_score="0.894"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="47384" i_stop="47011" i_length="374">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47010" g_stop="46958" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="692" r_length="53" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E461699" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E461699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49252" e_stop="49164"/>
          <exon e_start="48495" e_stop="48348"/>
          <exon e_start="48265" e_stop="48146"/>
          <exon e_start="48045" e_stop="48002"/>
          <exon e_start="47916" e_stop="47791"/>
          <exon e_start="47469" e_stop="47385"/>
          <exon e_start="47010" e_stop="46958"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGCAAATTCTGGTTAAGGCCCCAAAAGAGTCTTTCCTAATTTATATGCTTCCATTGAATCTCCGAAAATTCCTAATTTCTTCGAGGTAACACTTTTCTTTTTAATTTGCTAATTTCTCACTGGTTTATGCGTTAAATAATGGGGTTCTGTTAAATATCAAGATTTAATTTAGTTTTCCTTTTGATGAATTTGTTCCCATTTTTTAAAGTGGAATACTCAGAAAAACTGAAGCTTTGATGATATGTTCTGTTTGACCTTTTTAAATAGTTACTTGAAATCCTGTTTTTTACAAGTCAACATTTTTTCTTGGGGATAGGAATTGGGGTTCTTGAGATTTTCATTTTTGATCAAAGATATTGTGATAGAATCGACTTAAATTTAACCTTAGGGATATAGCCAATTCTTGAATTAAGATTCCGTGGTATCAAAATGAATGTACGGTTCGAGTTGAAAACAATGGGTGCAGTCACCTATAGGCTATATATCGATTCTGATTTGGGAACTGCTAGTATTAGAATATTAGAATCTATTGACTATATACATAAATTTTAAAGAGGATTAATTGATATATGGATGTGATTTCTTATCTTGAATTTGACAATGCTGATTTTGCAACTTTTAAGGGAAAATGAAGTGAAAAATATTCTTAACTGATGACATCTGTACTTTATTCTAGTAAATGATTTATTTTGTATAACAGGAAAACAGAATGAGGCTAGTTAAGATGACTTGTTTGTGAATGTGTATAATCAGGTTCCTGCATCGATTAATGGCCACCAACTGTGGAAAGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTCATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTTTGAGGTGCCATTTGCTTCTGTTATCTGTGGTTCCTTTACTGCCTCTTCCTCTATCTTCACTGGAAAAATCTTTTTTCCTTTTGTAGATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATGTCGGAGGTTCATATTTTCTTCTTTTCTCTGGTAGCCCAAACAATGTGTCTTGAGAAGTTGCCTCCAGTGTGTATCACCTAATTTCAACCTTTTCAAAATCATGCAGGTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTACGTAAGTCTCTGGCGGTTTGCGAAACACAAGAAAAGCTGTGAAGTGCAAAAGACTTGTGCTATAACAGTTTGTTTTCGGTATGCAGGGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAGGTTAGTGCCTATTCTCCTGACATAGTGAAATTAGTTGCATTAGCATACTAATGCTACACAGTAACAATATTCAATTTTCTTCTCATTTTCCTTTCTATTGGATCTTTCTCCTGAGTTTTGATAATGATTTAAAGTTTTAGTCCTTGTATAAATATTGATCATTACAGTGATGCATCACTGGTCAATAGCCATTTTCCTTCTTTTTTTCCCAGTGTTTTATGACCATAAGCAGATGTTATGCATAATAAATATGGCGACATAGTTAGTATAGAAGATGTCATATATAGTTTAAAGTGACAGCATTTGACTCTCAACGTGTAGAGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAGGTATATTTCCACAGCTTCTATCCAATAGCCAACTGGAGAGTCTGTCTTCTATTTTTCTTGCTCGTTTCCTTTCTCGCAGAACATTCACTGAGGGGTGTGTGGGTGTGGGTGTAAGTAGTACTGCTGGAGAACTGCTAAAGACAGTAGTAAAGCAGCCCATCTCAATTATATCTGTACTTGGCATTATGACTAGTATTTTGTCCTGCTCCTTGATGGACCTAGTCATTCATATCACATGTTACCTAATTTTCAGTACCTCATGCTCACTACTACTACTACTTCCCCAATCCCCCCTGCAGGTTGGCTCGTCAGTAGGATAGATCACAATTTTATAAATATTTAAAGTAAATTTTGTTGGTTTTGGGTATGTGAAGGTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTT</genome_strand>
        <mrna_strand>AAGAGGCAAATTCTGGTTACGG-CCCAAAAGAGTCTTTCCTAATTTATATGCTTTCATTGAATCTCCGAAAAATCCTAATTTCTCCGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTGCATCGATTAATGGCCACCAACAGTGGAAAGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTGATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTTTGAG..................................................................................ATTAAGTGGCATCCGTTTCTTCTCAACCCATCTGCACCTAAAGAAGGGATTAACAAGAAAAATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATGTCAGAG....................................................................................................GTTTTTAAGGGTCTTGGGCTGGAATACAACATGTCAGGACTTAC.....................................................................................GGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTTGCAGGACAACAGGGGCCTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTTGGCTATTTCACACAGGGAAGGTATATAGGTGACAG.................................................................................................................................................................................................................................................................................................................................GGAATTTCTTATCGAAGCTGCAAGAAAGGTCGGTATAGAAGGAGCAGCTGACTTCCTTGAAGATCCCCAACATGGGCTAAAGGAG......................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAAGAGCTTCAGCAACACTCATCCAATATATCAGGCGTCCCACATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E205609" ref_strand="+" ref_description="SGN-E205609 [cLEC-21-F5]">
      <seq>tggttaaggccccaaaagagtctttcctaatttatatgcttccattgaatctccgaaaattcctaatttcttcgaggttcctgcatcgattaatggccaccaactgtggaaagaagtttatccgaattgatatcagttcggatactgtgtgcccctggtgctttgtggggaaaaagaaccttcataaagctatagcgttaaccagtgatcagtatgattttgagattaagtggcatccgtttcttctcaacccttctgcacctaaagaagggattaacaagaaagattactacagaaataagtttggatctcgctctgaacaaatgatgtcaagaatgtcggaggtttttaagggccttgggatggaatacaacatgtcaggacttacgggaagtagtctggacagccacaggctactatatttcgcaggacaacaggggcttgacaagcaaaataatcttgctgaggagctttttctcggctatttcacacagggaaggtatataggtgacagagaatttcttattgaagctgcaagaaaagttggtgtggaaggagcagctgacttccttgaagatcccaacaatgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="49539" stop="47093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49239" g_stop="49164" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49163" i_stop="48496" i_length="668">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48495" g_stop="48348" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="224" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48347" i_stop="48266" i_length="82">
            <donor d_prob="0.361" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48265" g_stop="48146" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="344" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48145" i_stop="48046" i_length="100">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48045" g_stop="48002" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="388" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48001" i_stop="47917" i_length="85">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47916" g_stop="47791" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="514" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47790" i_stop="47470" i_length="321">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47469" g_stop="47393" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="591" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E205609" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205609" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49239" e_stop="49164"/>
          <exon e_start="48495" e_stop="48348"/>
          <exon e_start="48265" e_stop="48146"/>
          <exon e_start="48045" e_stop="48002"/>
          <exon e_start="47916" e_stop="47791"/>
          <exon e_start="47469" e_stop="47393"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTAAGGCCCCAAAAGAGTCTTTCCTAATTTATATGCTTCCATTGAATCTCCGAAAATTCCTAATTTCTTCGAGGTAACACTTTTCTTTTTAATTTGCTAATTTCTCACTGGTTTATGCGTTAAATAATGGGGTTCTGTTAAATATCAAGATTTAATTTAGTTTTCCTTTTGATGAATTTGTTCCCATTTTTTAAAGTGGAATACTCAGAAAAACTGAAGCTTTGATGATATGTTCTGTTTGACCTTTTTAAATAGTTACTTGAAATCCTGTTTTTTACAAGTCAACATTTTTTCTTGGGGATAGGAATTGGGGTTCTTGAGATTTTCATTTTTGATCAAAGATATTGTGATAGAATCGACTTAAATTTAACCTTAGGGATATAGCCAATTCTTGAATTAAGATTCCGTGGTATCAAAATGAATGTACGGTTCGAGTTGAAAACAATGGGTGCAGTCACCTATAGGCTATATATCGATTCTGATTTGGGAACTGCTAGTATTAGAATATTAGAATCTATTGACTATATACATAAATTTTAAAGAGGATTAATTGATATATGGATGTGATTTCTTATCTTGAATTTGACAATGCTGATTTTGCAACTTTTAAGGGAAAATGAAGTGAAAAATATTCTTAACTGATGACATCTGTACTTTATTCTAGTAAATGATTTATTTTGTATAACAGGAAAACAGAATGAGGCTAGTTAAGATGACTTGTTTGTGAATGTGTATAATCAGGTTCCTGCATCGATTAATGGCCACCAACTGTGGAAAGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTCATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTTTGAGGTGCCATTTGCTTCTGTTATCTGTGGTTCCTTTACTGCCTCTTCCTCTATCTTCACTGGAAAAATCTTTTTTCCTTTTGTAGATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATGTCGGAGGTTCATATTTTCTTCTTTTCTCTGGTAGCCCAAACAATGTGTCTTGAGAAGTTGCCTCCAGTGTGTATCACCTAATTTCAACCTTTTCAAAATCATGCAGGTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTACGTAAGTCTCTGGCGGTTTGCGAAACACAAGAAAAGCTGTGAAGTGCAAAAGACTTGTGCTATAACAGTTTGTTTTCGGTATGCAGGGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAGGTTAGTGCCTATTCTCCTGACATAGTGAAATTAGTTGCATTAGCATACTAATGCTACACAGTAACAATATTCAATTTTCTTCTCATTTTCCTTTCTATTGGATCTTTCTCCTGAGTTTTGATAATGATTTAAAGTTTTAGTCCTTGTATAAATATTGATCATTACAGTGATGCATCACTGGTCAATAGCCATTTTCCTTCTTTTTTTCCCAGTGTTTTATGACCATAAGCAGATGTTATGCATAATAAATATGGCGACATAGTTAGTATAGAAGATGTCATATATAGTTTAAAGTGACAGCATTTGACTCTCAACGTGTAGAGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGC</genome_strand>
        <mrna_strand>TGGTTAAGGCCCCAAAAGAGTCTTTCCTAATTTATATGCTTCCATTGAATCTCCGAAAATTCCTAATTTCTTCGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTGCATCGATTAATGGCCACCAACTGTGGAAAGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTCATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTTTGAG..................................................................................ATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATGTCGGAG....................................................................................................GTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTAC.....................................................................................GGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAG.................................................................................................................................................................................................................................................................................................................................AGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E337771" ref_strand="+" ref_description="SGN-E337771 [cTOE-17-H9]">
      <seq>ccttttttcctaaaaaaaatttgttcctattcaagatttgatttcagaagaagcaaattctggttaaggccccaaaagagtctttcctaatttatatgcttccattgaatctccgaaaattcctaatttcttcgaggttcctgcatcgattaatggccaccaactgtggaaagaagtttatccgaattgatatcagttcggatactgtgtgcccctggtgctttgtggggaaaaagaaccttcataaagctatagcgttaaccagtgatcagtatgattttgagattaagtggcatccgtttcttctcaacccttctgcacctaaagaagggattaacaagaaagattactacagaaataagtttggatctcgctctgaacaaatgatgtcaagaatgtcggaggtttttaagggccttgggatggaatacaacatgtcaggacttacgggaagtagtctggacagccacaggctactatatttcgcaggacaacaggggcttgacaagcaaaataatcttgctgaggagctttttctcggctatttcacacagggaaggtatataggtgacagagaatttcttattgaagctgcaagaaaagttggtgtggaagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="49599" stop="47127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49299" g_stop="49164" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49163" i_stop="48496" i_length="668">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48495" g_stop="48348" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="284" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48347" i_stop="48266" i_length="82">
            <donor d_prob="0.361" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48265" g_stop="48146" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="404" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48145" i_stop="48046" i_length="100">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48045" g_stop="48002" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="448" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48001" i_stop="47917" i_length="85">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47916" g_stop="47791" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="574" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47790" i_stop="47470" i_length="321">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47469" g_stop="47427" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="617" r_length="43" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E337771" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337771" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49299" e_stop="49164"/>
          <exon e_start="48495" e_stop="48348"/>
          <exon e_start="48265" e_stop="48146"/>
          <exon e_start="48045" e_stop="48002"/>
          <exon e_start="47916" e_stop="47791"/>
          <exon e_start="47469" e_stop="47427"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTTTTCCTAAAAAAAATTTGTTCCTATTCAAGATTTGATTTCAGAAGAAGCAAATTCTGGTTAAGGCCCCAAAAGAGTCTTTCCTAATTTATATGCTTCCATTGAATCTCCGAAAATTCCTAATTTCTTCGAGGTAACACTTTTCTTTTTAATTTGCTAATTTCTCACTGGTTTATGCGTTAAATAATGGGGTTCTGTTAAATATCAAGATTTAATTTAGTTTTCCTTTTGATGAATTTGTTCCCATTTTTTAAAGTGGAATACTCAGAAAAACTGAAGCTTTGATGATATGTTCTGTTTGACCTTTTTAAATAGTTACTTGAAATCCTGTTTTTTACAAGTCAACATTTTTTCTTGGGGATAGGAATTGGGGTTCTTGAGATTTTCATTTTTGATCAAAGATATTGTGATAGAATCGACTTAAATTTAACCTTAGGGATATAGCCAATTCTTGAATTAAGATTCCGTGGTATCAAAATGAATGTACGGTTCGAGTTGAAAACAATGGGTGCAGTCACCTATAGGCTATATATCGATTCTGATTTGGGAACTGCTAGTATTAGAATATTAGAATCTATTGACTATATACATAAATTTTAAAGAGGATTAATTGATATATGGATGTGATTTCTTATCTTGAATTTGACAATGCTGATTTTGCAACTTTTAAGGGAAAATGAAGTGAAAAATATTCTTAACTGATGACATCTGTACTTTATTCTAGTAAATGATTTATTTTGTATAACAGGAAAACAGAATGAGGCTAGTTAAGATGACTTGTTTGTGAATGTGTATAATCAGGTTCCTGCATCGATTAATGGCCACCAACTGTGGAAAGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTCATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTTTGAGGTGCCATTTGCTTCTGTTATCTGTGGTTCCTTTACTGCCTCTTCCTCTATCTTCACTGGAAAAATCTTTTTTCCTTTTGTAGATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATGTCGGAGGTTCATATTTTCTTCTTTTCTCTGGTAGCCCAAACAATGTGTCTTGAGAAGTTGCCTCCAGTGTGTATCACCTAATTTCAACCTTTTCAAAATCATGCAGGTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTACGTAAGTCTCTGGCGGTTTGCGAAACACAAGAAAAGCTGTGAAGTGCAAAAGACTTGTGCTATAACAGTTTGTTTTCGGTATGCAGGGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAGGTTAGTGCCTATTCTCCTGACATAGTGAAATTAGTTGCATTAGCATACTAATGCTACACAGTAACAATATTCAATTTTCTTCTCATTTTCCTTTCTATTGGATCTTTCTCCTGAGTTTTGATAATGATTTAAAGTTTTAGTCCTTGTATAAATATTGATCATTACAGTGATGCATCACTGGTCAATAGCCATTTTCCTTCTTTTTTTCCCAGTGTTTTATGACCATAAGCAGATGTTATGCATAATAAATATGGCGACATAGTTAGTATAGAAGATGTCATATATAGTTTAAAGTGACAGCATTTGACTCTCAACGTGTAGAGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGA</genome_strand>
        <mrna_strand>CCTTTTTTCCTAAAAAAAATTTGTTCCTATTCAAGATTTGATTTCAGAAGAAGCAAATTCTGGTTAAGGCCCCAAAAGAGTCTTTCCTAATTTATATGCTTCCATTGAATCTCCGAAAATTCCTAATTTCTTCGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTGCATCGATTAATGGCCACCAACTGTGGAAAGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTCATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTTTGAG..................................................................................ATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATGTCGGAG....................................................................................................GTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTAC.....................................................................................GGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAG.................................................................................................................................................................................................................................................................................................................................AGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E305525" ref_strand="+" ref_description="SGN-E305525 [cLEX-14-A1]">
      <seq>tccgaaaattcctaatttcttcgaggttcctgcatcgattaatggccaccaactgtggaaagaagtttatccgaattgatatcagttcggatactgtgtgcccctggtgctttgtggggaaaaagaaccttcataaagctatagcgttaaccagtgatcagtatgattttgagattaagtggcatccgtttcttctcaacccttctgcacctaaagaagggattaacaagaaagattactacagaaataagtttggatctcgctctgaacaaatgatgtcaagaatgtcggaggtttttaagggccttgggatggaatacaacatgtcaggacttacgggaagtagtctggacagccacaggctactatatttcgcaggacaacaggggcttgacaagcaaaataatcttgctgaggagctttttctcggctatttcacacagggaaggtatataggtgacagagaatttcttattgaagctgcaagaaaagttggtgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="49488" stop="47132"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49188" g_stop="49164" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49163" i_stop="48496" i_length="668">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.891" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48495" g_stop="48348" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="173" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48347" i_stop="48266" i_length="82">
            <donor d_prob="0.361" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48265" g_stop="48146" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="293" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48145" i_stop="48046" i_length="100">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48045" g_stop="48002" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="337" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48001" i_stop="47917" i_length="85">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47916" g_stop="47791" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="463" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47790" i_stop="47470" i_length="321">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47469" g_stop="47432" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="501" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E305525" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305525" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49188" e_stop="49164"/>
          <exon e_start="48495" e_stop="48348"/>
          <exon e_start="48265" e_stop="48146"/>
          <exon e_start="48045" e_stop="48002"/>
          <exon e_start="47916" e_stop="47791"/>
          <exon e_start="47469" e_stop="47432"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGAAAATTCCTAATTTCTTCGAGGTAACACTTTTCTTTTTAATTTGCTAATTTCTCACTGGTTTATGCGTTAAATAATGGGGTTCTGTTAAATATCAAGATTTAATTTAGTTTTCCTTTTGATGAATTTGTTCCCATTTTTTAAAGTGGAATACTCAGAAAAACTGAAGCTTTGATGATATGTTCTGTTTGACCTTTTTAAATAGTTACTTGAAATCCTGTTTTTTACAAGTCAACATTTTTTCTTGGGGATAGGAATTGGGGTTCTTGAGATTTTCATTTTTGATCAAAGATATTGTGATAGAATCGACTTAAATTTAACCTTAGGGATATAGCCAATTCTTGAATTAAGATTCCGTGGTATCAAAATGAATGTACGGTTCGAGTTGAAAACAATGGGTGCAGTCACCTATAGGCTATATATCGATTCTGATTTGGGAACTGCTAGTATTAGAATATTAGAATCTATTGACTATATACATAAATTTTAAAGAGGATTAATTGATATATGGATGTGATTTCTTATCTTGAATTTGACAATGCTGATTTTGCAACTTTTAAGGGAAAATGAAGTGAAAAATATTCTTAACTGATGACATCTGTACTTTATTCTAGTAAATGATTTATTTTGTATAACAGGAAAACAGAATGAGGCTAGTTAAGATGACTTGTTTGTGAATGTGTATAATCAGGTTCCTGCATCGATTAATGGCCACCAACTGTGGAAAGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTCATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTTTGAGGTGCCATTTGCTTCTGTTATCTGTGGTTCCTTTACTGCCTCTTCCTCTATCTTCACTGGAAAAATCTTTTTTCCTTTTGTAGATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATGTCGGAGGTTCATATTTTCTTCTTTTCTCTGGTAGCCCAAACAATGTGTCTTGAGAAGTTGCCTCCAGTGTGTATCACCTAATTTCAACCTTTTCAAAATCATGCAGGTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTACGTAAGTCTCTGGCGGTTTGCGAAACACAAGAAAAGCTGTGAAGTGCAAAAGACTTGTGCTATAACAGTTTGTTTTCGGTATGCAGGGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAGGTTAGTGCCTATTCTCCTGACATAGTGAAATTAGTTGCATTAGCATACTAATGCTACACAGTAACAATATTCAATTTTCTTCTCATTTTCCTTTCTATTGGATCTTTCTCCTGAGTTTTGATAATGATTTAAAGTTTTAGTCCTTGTATAAATATTGATCATTACAGTGATGCATCACTGGTCAATAGCCATTTTCCTTCTTTTTTTCCCAGTGTTTTATGACCATAAGCAGATGTTATGCATAATAAATATGGCGACATAGTTAGTATAGAAGATGTCATATATAGTTTAAAGTGACAGCATTTGACTCTCAACGTGTAGAGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGG</genome_strand>
        <mrna_strand>TCCGAAAATTCCTAATTTCTTCGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTGCATCGATTAATGGCCACCAACTGTGGAAAGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTCATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTTTGAG..................................................................................ATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATGTCGGAG....................................................................................................GTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTAC.....................................................................................GGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAG.................................................................................................................................................................................................................................................................................................................................AGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E264845" ref_strand="+" ref_description="SGN-E264845 [cLEG-71-E22]">
      <seq>ttgtcctaagtccattttcacatcacaccaaactcctaaatttttacccttttttcctaaaaaaaatttgttcctattcaagatttgatttcagaagaagcaaattctggttaaggccccaaaagagtctttcctaatttatatgcttccattgaatctccgaaaattcctaatttcttcgaggttcctgcatcgattaatggccaccaactgtggaaagaagtttatccgaattgatatcagttcggatactgtgtgcccctggtgctttgtggggaaaaagaaccttcataaagctatagcgttaaccagtgatcagtatgattntgagattaagtggcatccgtttcttctcaacccttctgcacctaaagaagggattaacaagaaagattactacagaaaataagtttggatctcgctctgaacaaatgatgtcaaaaatggtcggagggtttttaagggnccttgggatggaatacaacatgtcaggacttaacgggaagtagtctggacagccacaggctataatatttcgcaggacaacaggggcttgacaagcaaaataatcttgctgaggagctttttctcggctattnncacagggaaggtatataggtgacagagaatttcttattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="49646" stop="47491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49346" g_stop="49164" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49163" i_stop="48496" i_length="668">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48495" g_stop="48348" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="331" r_length="148" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48347" i_stop="48266" i_length="82">
            <donor d_prob="0.361" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48265" g_stop="48146" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="454" r_length="123" r_score="0.942"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48145" i_stop="48046" i_length="100">
            <donor d_prob="0.932" d_score="0.90"/>
            <acceptor a_prob="0.990" a_score="0.91"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48045" g_stop="48002" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="500" r_length="46" r_score="0.909"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48001" i_stop="47917" i_length="85">
            <donor d_prob="0.000" d_score="0.91"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47916" g_stop="47791" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="625" r_length="125" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E264845" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E264845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49346" e_stop="49164"/>
          <exon e_start="48495" e_stop="48348"/>
          <exon e_start="48265" e_stop="48146"/>
          <exon e_start="48045" e_stop="48002"/>
          <exon e_start="47916" e_stop="47791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTCCTAAGTCCATTTTCACATCACACCAAACTCCTAAATTTTTACCCTTTTTTCCTAAAAAAAATTTGTTCCTATTCAAGATTTGATTTCAGAAGAAGCAAATTCTGGTTAAGGCCCCAAAAGAGTCTTTCCTAATTTATATGCTTCCATTGAATCTCCGAAAATTCCTAATTTCTTCGAGGTAACACTTTTCTTTTTAATTTGCTAATTTCTCACTGGTTTATGCGTTAAATAATGGGGTTCTGTTAAATATCAAGATTTAATTTAGTTTTCCTTTTGATGAATTTGTTCCCATTTTTTAAAGTGGAATACTCAGAAAAACTGAAGCTTTGATGATATGTTCTGTTTGACCTTTTTAAATAGTTACTTGAAATCCTGTTTTTTACAAGTCAACATTTTTTCTTGGGGATAGGAATTGGGGTTCTTGAGATTTTCATTTTTGATCAAAGATATTGTGATAGAATCGACTTAAATTTAACCTTAGGGATATAGCCAATTCTTGAATTAAGATTCCGTGGTATCAAAATGAATGTACGGTTCGAGTTGAAAACAATGGGTGCAGTCACCTATAGGCTATATATCGATTCTGATTTGGGAACTGCTAGTATTAGAATATTAGAATCTATTGACTATATACATAAATTTTAAAGAGGATTAATTGATATATGGATGTGATTTCTTATCTTGAATTTGACAATGCTGATTTTGCAACTTTTAAGGGAAAATGAAGTGAAAAATATTCTTAACTGATGACATCTGTACTTTATTCTAGTAAATGATTTATTTTGTATAACAGGAAAACAGAATGAGGCTAGTTAAGATGACTTGTTTGTGAATGTGTATAATCAGGTTCCTGCATCGATTAATGGCCACCAACTGTGGAAAGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTCATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTTTGAGGTGCCATTTGCTTCTGTTATCTGTGGTTCCTTTACTGCCTCTTCCTCTATCTTCACTGGAAAAATCTTTTTTCCTTTTGTAGATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAG-AAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAAT-GTCGGA-GGTTCATATTTTCTTCTTTTCTCTGGTAGCCCAAACAATGTGTCTTGAGAAGTTGCCTCCAGTGTGTATCACCTAATTTCAACCTTTTCAAAATCATGCAGGTTTTTAAGGG-CCTTGGGATGGAATACAACATGTCAGGACTT-ACGTAAGTCTCTGGCGGTTTGCGAAACACAAGAAAAGCTGTGAAGTGCAAAAGACTTGTGCTATAACAGTTTGTTTTCGGTATGCAGGGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAG</genome_strand>
        <mrna_strand>TTGTCCTAAGTCCATTTTCACATCACACCAAACTCCTAAATTTTTACCCTTTTTTCCTAAAAAAAATTTGTTCCTATTCAAGATTTGATTTCAGAAGAAGCAAATTCTGGTTAAGGCCCCAAAAGAGTCTTTCCTAATTTATATGCTTCCATTGAATCTCCGAAAATTCCTAATTTCTTCGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTGCATCGATTAATGGCCACCAACTGTGGAAAGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTCATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTNTGAG..................................................................................ATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAAAATGGTCGGAGG....................................................................................................GTTTTTAAGGGNCCTTGGGATGGAATACAACATGTCAGGACTTAAC.....................................................................................GGGAAGTAGTCTGGACAGCCACAGGCTATAATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTA-TTNNCACAGGGAAGGTATATAGGTGACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E358737" ref_strand="+" ref_description="SGN-E358737 [cLHT-24-G9]">
      <seq>gattaatggccaccaactgtggaaagaagtttatccgaattgatatcagttcggatactgtgtgcccctggtgctttgtggggaaaaagaaccttgataaagctatagcgttaaccagtgatcagtatgattttgagattaagtggcatccgtttcttctcaacccttctgcacctaaagaagggattaacaagaaagattactacagaaataagtttggatctcgctctgaacaaatgatgtcaagaatgtcagaggtttttaagggccttgggatggaatacaacatgtcaggacttacgggaagtagtctggacagccacaggctactatatttcgcaggacagcaggggcttgacaagcaaaataatcttgctgaggagctttttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="48784" stop="47527"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48484" g_stop="48348" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48347" i_stop="48266" i_length="82">
            <donor d_prob="0.361" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48265" g_stop="48146" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="257" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48145" i_stop="48046" i_length="100">
            <donor d_prob="0.932" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48045" g_stop="48002" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="301" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48001" i_stop="47917" i_length="85">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47916" g_stop="47827" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="391" r_length="90" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E358737" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358737" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48484" e_stop="48348"/>
          <exon e_start="48265" e_stop="48146"/>
          <exon e_start="48045" e_stop="48002"/>
          <exon e_start="47916" e_stop="47827"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTAATGGCCACCAACTGTGGAAAGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTCATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTTTGAGGTGCCATTTGCTTCTGTTATCTGTGGTTCCTTTACTGCCTCTTCCTCTATCTTCACTGGAAAAATCTTTTTTCCTTTTGTAGATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATGTCGGAGGTTCATATTTTCTTCTTTTCTCTGGTAGCCCAAACAATGTGTCTTGAGAAGTTGCCTCCAGTGTGTATCACCTAATTTCAACCTTTTCAAAATCATGCAGGTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTACGTAAGTCTCTGGCGGTTTGCGAAACACAAGAAAAGCTGTGAAGTGCAAAAGACTTGTGCTATAACAGTTTGTTTTCGGTATGCAGGGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCT</genome_strand>
        <mrna_strand>GATTAATGGCCACCAACTGTGGAAAGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTGATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTTTGAG..................................................................................ATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATGTCAGAG....................................................................................................GTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTAC.....................................................................................GGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAGCAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E560997" ref_strand="+" ref_description="SGN-E560997 [20737]">
      <seq>aagaggcaaattctggttacgggcccaaaagagtctttcctaatttatatgctttcattgaatctccgaaaattctaatttctccgaggttcctgcatcgattaatggccaccaacagtggaaagaagtttatccgaattgatatcagttcggatactgtgtgcccctggtgctttgtggggaaaaagaaccttgataaagctatagcgttaaccagtggatcagtatgattttgagattaagtggcatccgtttcttctcaacccttctgcacctaaagaagggattaacaagaaagattactacagaaataaagtttgggatctcgctctgaacaaatgatgtcaagaatgtcagaggtttttaagggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="49552" stop="47839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49252" g_stop="49164" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49163" i_stop="48496" i_length="668">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.891" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48495" g_stop="48348" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="237" r_length="149" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48347" i_stop="48266" i_length="82">
            <donor d_prob="0.361" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48265" g_stop="48146" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="359" r_length="122" r_score="0.958"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48145" i_stop="48046" i_length="100">
            <donor d_prob="0.932" d_score="0.90"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48045" g_stop="48034" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="371" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E560997" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E560997" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49252" e_stop="49164"/>
          <exon e_start="48495" e_stop="48348"/>
          <exon e_start="48265" e_stop="48146"/>
          <exon e_start="48045" e_stop="48034"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGCAAATTCTGGTTAAGGCCCCAAAAGAGTCTTTCCTAATTTATATGCTTCCATTGAATCTCCGAAAATTCCTAATTTCTTCGAGGTAACACTTTTCTTTTTAATTTGCTAATTTCTCACTGGTTTATGCGTTAAATAATGGGGTTCTGTTAAATATCAAGATTTAATTTAGTTTTCCTTTTGATGAATTTGTTCCCATTTTTTAAAGTGGAATACTCAGAAAAACTGAAGCTTTGATGATATGTTCTGTTTGACCTTTTTAAATAGTTACTTGAAATCCTGTTTTTTACAAGTCAACATTTTTTCTTGGGGATAGGAATTGGGGTTCTTGAGATTTTCATTTTTGATCAAAGATATTGTGATAGAATCGACTTAAATTTAACCTTAGGGATATAGCCAATTCTTGAATTAAGATTCCGTGGTATCAAAATGAATGTACGGTTCGAGTTGAAAACAATGGGTGCAGTCACCTATAGGCTATATATCGATTCTGATTTGGGAACTGCTAGTATTAGAATATTAGAATCTATTGACTATATACATAAATTTTAAAGAGGATTAATTGATATATGGATGTGATTTCTTATCTTGAATTTGACAATGCTGATTTTGCAACTTTTAAGGGAAAATGAAGTGAAAAATATTCTTAACTGATGACATCTGTACTTTATTCTAGTAAATGATTTATTTTGTATAACAGGAAAACAGAATGAGGCTAGTTAAGATGACTTGTTTGTGAATGTGTATAATCAGGTTCCTGCATCGATTAATGGCCACCAACTGTGGAAAGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTCATAAAGCTATAGCGTTAACCAGT-GATCAGTATGATTTTGAGGTGCCATTTGCTTCTGTTATCTGTGGTTCCTTTACTGCCTCTTCCTCTATCTTCACTGGAAAAATCTTTTTTCCTTTTGTAGATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAAT-AAGTTT-GGATCTCGCTCTGAACAAATGATGTCAAGAATGTCGGAGGTTCATATTTTCTTCTTTTCTCTGGTAGCCCAAACAATGTGTCTTGAGAAGTTGCCTCCAGTGTGTATCACCTAATTTCAACCTTTTCAAAATCATGCAGGTTTTTAAGGGC</genome_strand>
        <mrna_strand>AAGAGGCAAATTCTGGTTACGGGCCCAAAAGAGTCTTTCCTAATTTATATGCTTTCATTGAATCTCCGAAAATT-CTAATTTCTCCGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTGCATCGATTAATGGCCACCAACAGTGGAAAGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTGATAAAGCTATAGCGTTAACCAGTGGATCAGTATGATTTTGAG..................................................................................ATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAAGTTTGGGATCTCGCTCTGAACAAATGATGTCAAGAATGTCAGAG....................................................................................................GTTTTTAAGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E334809" ref_strand="+" ref_description="SGN-E334809 [cTOE-3-P18]">
      <seq>ttaagttgtcctaagtccattttcacatcacaccaaactcctaaatttttacccttttttcctaaaaaaaatttgttcctattcaagatttgatttcagaagaagcaaattctggttaaggccccaaaagagtctttcctaatttatatgcttccattgaatctccgaaaattcctaatttcttcgaggttcctgcatcgattaatggccaccaactgtggaaagaagtttatccgaattgatatcagttcggatactgtgtgcccctggtgctttgtggggaaaaagaaccttcataaagctatagcgttaaccagtgatcagtatgattttgagattaagtggcatccgtttcttctcaacccttctgcacctaaagaagggattaacaagaaagattactacagaaataagtttggatctcgctctgaacaaatgatgtcaagaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="49651" stop="47852"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49351" g_stop="49164" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49163" i_stop="48496" i_length="668">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48495" g_stop="48348" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="336" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48347" i_stop="48266" i_length="82">
            <donor d_prob="0.361" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48265" g_stop="48152" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="450" r_length="114" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E334809" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334809" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49351" e_stop="49164"/>
          <exon e_start="48495" e_stop="48348"/>
          <exon e_start="48265" e_stop="48152"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGTTGTCCTAAGTCCATTTTCACATCACACCAAACTCCTAAATTTTTACCCTTTTTTCCTAAAAAAAATTTGTTCCTATTCAAGATTTGATTTCAGAAGAAGCAAATTCTGGTTAAGGCCCCAAAAGAGTCTTTCCTAATTTATATGCTTCCATTGAATCTCCGAAAATTCCTAATTTCTTCGAGGTAACACTTTTCTTTTTAATTTGCTAATTTCTCACTGGTTTATGCGTTAAATAATGGGGTTCTGTTAAATATCAAGATTTAATTTAGTTTTCCTTTTGATGAATTTGTTCCCATTTTTTAAAGTGGAATACTCAGAAAAACTGAAGCTTTGATGATATGTTCTGTTTGACCTTTTTAAATAGTTACTTGAAATCCTGTTTTTTACAAGTCAACATTTTTTCTTGGGGATAGGAATTGGGGTTCTTGAGATTTTCATTTTTGATCAAAGATATTGTGATAGAATCGACTTAAATTTAACCTTAGGGATATAGCCAATTCTTGAATTAAGATTCCGTGGTATCAAAATGAATGTACGGTTCGAGTTGAAAACAATGGGTGCAGTCACCTATAGGCTATATATCGATTCTGATTTGGGAACTGCTAGTATTAGAATATTAGAATCTATTGACTATATACATAAATTTTAAAGAGGATTAATTGATATATGGATGTGATTTCTTATCTTGAATTTGACAATGCTGATTTTGCAACTTTTAAGGGAAAATGAAGTGAAAAATATTCTTAACTGATGACATCTGTACTTTATTCTAGTAAATGATTTATTTTGTATAACAGGAAAACAGAATGAGGCTAGTTAAGATGACTTGTTTGTGAATGTGTATAATCAGGTTCCTGCATCGATTAATGGCCACCAACTGTGGAAAGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTCATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTTTGAGGTGCCATTTGCTTCTGTTATCTGTGGTTCCTTTACTGCCTCTTCCTCTATCTTCACTGGAAAAATCTTTTTTCCTTTTGTAGATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATG</genome_strand>
        <mrna_strand>TTAAGTTGTCCTAAGTCCATTTTCACATCACACCAAACTCCTAAATTTTTACCCTTTTTTCCTAAAAAAAATTTGTTCCTATTCAAGATTTGATTTCAGAAGAAGCAAATTCTGGTTAAGGCCCCAAAAGAGTCTTTCCTAATTTATATGCTTCCATTGAATCTCCGAAAATTCCTAATTTCTTCGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTGCATCGATTAATGGCCACCAACTGTGGAAAGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTCATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTTTGAG..................................................................................ATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E303988" ref_strand="+" ref_description="SGN-E303988 [cLEX-4-P20]">
      <seq>tcctaaatttttacccttttttcctaaaaaaaatttgttcctattcaagatttgatttcagaagaagcaaattctggttaaggccccaaaagagtctttcctaatttatatgcttccattgaatctccgaaaattcctaatttcttcgaggttcctgcatcgattaatggccaccaactgtggaaagaagtttatccgaattgatatcagttcggatactgtgtgcccctggtgctttgtggggaaaaagaaccttcataaagctatagcgttaaccagtgatcagtatgattttgagattaagtggcatccgtttcttctcaacccttctgcacctaaagaagggattaacaagaaagattactacagaaataagtttggatctcgctctgaacaaatgatgtcaagaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="49613" stop="47853"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49313" g_stop="49164" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49163" i_stop="48496" i_length="668">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48495" g_stop="48348" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="298" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48347" i_stop="48266" i_length="82">
            <donor d_prob="0.361" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48265" g_stop="48153" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="411" r_length="113" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E303988" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303988" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49313" e_stop="49164"/>
          <exon e_start="48495" e_stop="48348"/>
          <exon e_start="48265" e_stop="48153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTAAATTTTTACCCTTTTTTCCTAAAAAAAATTTGTTCCTATTCAAGATTTGATTTCAGAAGAAGCAAATTCTGGTTAAGGCCCCAAAAGAGTCTTTCCTAATTTATATGCTTCCATTGAATCTCCGAAAATTCCTAATTTCTTCGAGGTAACACTTTTCTTTTTAATTTGCTAATTTCTCACTGGTTTATGCGTTAAATAATGGGGTTCTGTTAAATATCAAGATTTAATTTAGTTTTCCTTTTGATGAATTTGTTCCCATTTTTTAAAGTGGAATACTCAGAAAAACTGAAGCTTTGATGATATGTTCTGTTTGACCTTTTTAAATAGTTACTTGAAATCCTGTTTTTTACAAGTCAACATTTTTTCTTGGGGATAGGAATTGGGGTTCTTGAGATTTTCATTTTTGATCAAAGATATTGTGATAGAATCGACTTAAATTTAACCTTAGGGATATAGCCAATTCTTGAATTAAGATTCCGTGGTATCAAAATGAATGTACGGTTCGAGTTGAAAACAATGGGTGCAGTCACCTATAGGCTATATATCGATTCTGATTTGGGAACTGCTAGTATTAGAATATTAGAATCTATTGACTATATACATAAATTTTAAAGAGGATTAATTGATATATGGATGTGATTTCTTATCTTGAATTTGACAATGCTGATTTTGCAACTTTTAAGGGAAAATGAAGTGAAAAATATTCTTAACTGATGACATCTGTACTTTATTCTAGTAAATGATTTATTTTGTATAACAGGAAAACAGAATGAGGCTAGTTAAGATGACTTGTTTGTGAATGTGTATAATCAGGTTCCTGCATCGATTAATGGCCACCAACTGTGGAAAGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTCATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTTTGAGGTGCCATTTGCTTCTGTTATCTGTGGTTCCTTTACTGCCTCTTCCTCTATCTTCACTGGAAAAATCTTTTTTCCTTTTGTAGATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAAT</genome_strand>
        <mrna_strand>TCCTAAATTTTTACCCTTTTTTCCTAAAAAAAATTTGTTCCTATTCAAGATTTGATTTCAGAAGAAGCAAATTCTGGTTAAGGCCCCAAAAGAGTCTTTCCTAATTTATATGCTTCCATTGAATCTCCGAAAATTCCTAATTTCTTCGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTGCATCGATTAATGGCCACCAACTGTGGAAAGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTCATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTTTGAG..................................................................................ATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E334921" ref_strand="+" ref_description="SGN-E334921 [cTOE-3-P6]">
      <seq>ttaagttgtcctaagtccattttcacatcacaccaaactcctaaatttttacccttttttcctaaaaaaaatttgttcctattcaagatttgatttcagaagaagcaaattctggttaaggccccaaaagagtctttcctaatttatatgcttccattgaatctccgaaaattcctaatttcttcgaggttcctgcatcgattaatggccaccaactgtggaaagaagtttatccgaattgatatcagttcggatactgtgtgcccctggtgctttgtggggaaaaagaaccttcataaagctatagcgttaaccagtgatcagtatgattttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="49651" stop="48048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49351" g_stop="49164" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49163" i_stop="48496" i_length="668">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48495" g_stop="48348" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="336" r_length="148" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E334921" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>336</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49351" e_stop="49164"/>
          <exon e_start="48495" e_stop="48348"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGTTGTCCTAAGTCCATTTTCACATCACACCAAACTCCTAAATTTTTACCCTTTTTTCCTAAAAAAAATTTGTTCCTATTCAAGATTTGATTTCAGAAGAAGCAAATTCTGGTTAAGGCCCCAAAAGAGTCTTTCCTAATTTATATGCTTCCATTGAATCTCCGAAAATTCCTAATTTCTTCGAGGTAACACTTTTCTTTTTAATTTGCTAATTTCTCACTGGTTTATGCGTTAAATAATGGGGTTCTGTTAAATATCAAGATTTAATTTAGTTTTCCTTTTGATGAATTTGTTCCCATTTTTTAAAGTGGAATACTCAGAAAAACTGAAGCTTTGATGATATGTTCTGTTTGACCTTTTTAAATAGTTACTTGAAATCCTGTTTTTTACAAGTCAACATTTTTTCTTGGGGATAGGAATTGGGGTTCTTGAGATTTTCATTTTTGATCAAAGATATTGTGATAGAATCGACTTAAATTTAACCTTAGGGATATAGCCAATTCTTGAATTAAGATTCCGTGGTATCAAAATGAATGTACGGTTCGAGTTGAAAACAATGGGTGCAGTCACCTATAGGCTATATATCGATTCTGATTTGGGAACTGCTAGTATTAGAATATTAGAATCTATTGACTATATACATAAATTTTAAAGAGGATTAATTGATATATGGATGTGATTTCTTATCTTGAATTTGACAATGCTGATTTTGCAACTTTTAAGGGAAAATGAAGTGAAAAATATTCTTAACTGATGACATCTGTACTTTATTCTAGTAAATGATTTATTTTGTATAACAGGAAAACAGAATGAGGCTAGTTAAGATGACTTGTTTGTGAATGTGTATAATCAGGTTCCTGCATCGATTAATGGCCACCAACTGTGGAAAGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTCATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTTTGAG</genome_strand>
        <mrna_strand>TTAAGTTGTCCTAAGTCCATTTTCACATCACACCAAACTCCTAAATTTTTACCCTTTTTTCCTAAAAAAAATTTGTTCCTATTCAAGATTTGATTTCAGAAGAAGCAAATTCTGGTTAAGGCCCCAAAAGAGTCTTTCCTAATTTATATGCTTCCATTGAATCTCCGAAAATTCCTAATTTCTTCGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTGCATCGATTAATGGCCACCAACTGTGGAAAGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTCATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E302656" ref_strand="+" ref_description="SGN-E302656 [cLEX-1-C20]">
      <seq>aggaattggcagtcctgtcctccctccatccaatttctttggagctcaaactgcaaccttagattcttcaaattttccggataaaattacttccattgtttctcgatttcatctgagaaataaaatggatattgatgaaatacttggggtatctcggcctgtgagtttgacaaacaagagtgctatttatgtttggggttacaatcaatctgggcaaacgggtcggagagggaaagagaggagtttgaggatcccaaaacagcttcctccagagctatttggatgcccagctggtgggaattcccgttggttggatattgcttgtggtcgtgagcatactgctgctgtggcttctgatggatcgctttttacatggggagctaacgaatttggtcagctgggtgacggaactgaaaatgctaggaagcaccccaagaaagtgaaacaattgcaatctgaatttgttattagtgtttcatgtggagcacattgtactgttgccattgcagaaccacgtgaaaacgatggtagcatgtcagctcggagactttgggtttggggacagaaccagggatccaattacccacgactcttttggggtgccttttctccttctacggttattcgccaagtttcttgtggtgctgttcatgttgtagctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="+" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="50701" stop="53166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51001" g_stop="51113" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51114" i_stop="51231" i_length="118">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51232" g_stop="51495" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="377" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51496" i_stop="52219" i_length="724">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.792" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52220" g_stop="52413" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="571" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52414" i_stop="52498" i_length="85">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52499" g_stop="52546" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="619" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52547" i_stop="52823" i_length="277">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52824" g_stop="52866" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="662" r_length="43" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="+" ref_id="SGN-E302656" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51001" e_stop="51113"/>
          <exon e_start="51232" e_stop="51495"/>
          <exon e_start="52220" e_stop="52413"/>
          <exon e_start="52499" e_stop="52546"/>
          <exon e_start="52824" e_stop="52866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAATTGGCAGTCCTGTCCTCCCTCCATCCAATTTCTTTGGAGCTCAAACTGCAACCTTAGATTCTTCAAATTTTCCGGATAAAATTACTTCCATTGTTTCTCGATTTCATCGTAAGTTTTTCACTGCTTACATTTATTTTTTAGAGTCAAAGTTAGGGACTTGGGTTCAAAAACAGTAGTTAAAGATCATAGTTTTTTTTTGTAATTTATGGTTCATTTTTGTTGATAGTGAGAAATAAAATGGATATTGATGAAATACTTGGGGTATCTCGGCCTGTGAGTTTGACAAACAAGAGTGCTATTTATGTTTGGGGTTACAATCAATCTGGGCAAACGGGTCGGAGAGGGAAAGAGAGGAGTTTGAGGATCCCAAAACAGCTTCCTCCAGAGCTATTTGGATGCCCAGCTGGTGGGAATTCCCGTTGGTTGGATATTGCTTGTGGTCGTGAGCATACTGCTGCTGTGGCTTCTGATGGATCGCTTTTTACATGGGGTTTGCCCTTTATTTACCTTCACTTTTCAGTATCCATGTTTTACCTCTATTTCTGATTTCAATTGACTCTCGTTTACTTCATGCTTGCCCAAAGATTTGATCTTTTTTCATCAGCTGTCTCTGTATTTCTGATATAAATTGGGTGGAATGAAGAAAGAAAACCATGTTCTTTAGTTTGATCATGCTATCTGATGAAATTGGGTTGAGAAAGAGTTTCTGAAGATTGGGTGTAACCCAAGAATGTGCCAGTTATAGTATTTATCTTCCAAATGAATGATGAATTCTCATGTAAACTGTGGCATCTTTTAATTTTTCCCTAACATGGTTTGATCTCGGTTGGGGTTATCTATTTGCCTCTAAAACCCATTGCCTTATTCTTACTGATAAAAAGGTCATTGCTCTATTTTGTTGGTTATTTATTGCCTTTCTTAATTGATCTTGTTACATTTTGTGTATTTTTGCTCAAATAAATTCCTTGGTGTAATACTTGTTTTTTATTCCTTTACTCAAAGAGATATGTTGCAAAGAAGACATCGCCACTTTATGCATTTTAAGTTGATATAGAACAATTAATTTTACTTGTAAAGTTTACCTCTTTGGGAAAAATCTAGATTTTAATTGATATTTGACAATTAATTTCAGAAGTCTGTTCCTGCTTTTGTTTGTGGGGAAGTTGATTTTCCTTGTAAGAGAGAGCACTCCTAATCTTTATACCTTCAAACAGGAGCTAACGAATTTGGTCAGCTGGGTGACGGAACTGAAAATGCTAGGAAGCACCCCAAGAAAGTGAAACAATTGCAATCTGAATTTGTTATTAGTGTTTCATGTGGAGCACATTGTACTGTTGCCATTGCAGAACCACGTGAAAACGATGGTAGCATGTCAGCTCGGAGACTTTGGGTTTGGGGACAGAACCAGGTCAGTCTCACAAAAAAAAAAACCTTCAAGCAGCTACCTTGTTTATTTGAGATCACAATTTGTTTGCCTGTGTTATTCTATGCAGGGATCCAATTACCCACGACTCTTTTGGGGTGCCTTTTCTCCTTCTACGGTACTATTTTTTCTTGAGAATGAACTTTTGTGGAGATATCTGTGTTTTTCATGCAAATACATTACTTCTGTTCTGTGTGGTCCTAGTGGGGCTTAAGCATTTATCTAGTCGCATTTATGTTATGATAGCAGATTTACCTTTACCTGAGTTCTCTATCTAATCTATGCCCCCAATTTTTTTGTTAAGAAGTTGCTTTCCATACAAAAACAACGGTGACTTAACATTCGCAGTGCGCAACAAATTTTATGATATATGTATGCTCTTTCAATTCATTCAGGTTATTCGCCAAGTTTCTTGTGGTGCTGTTCATGTTGTAGCTC</genome_strand>
        <mrna_strand>AGGAATTGGCAGTCCTGTCCTCCCTCCATCCAATTTCTTTGGAGCTCAAACTGCAACCTTAGATTCTTCAAATTTTCCGGATAAAATTACTTCCATTGTTTCTCGATTTCATC......................................................................................................................TGAGAAATAAAATGGATATTGATGAAATACTTGGGGTATCTCGGCCTGTGAGTTTGACAAACAAGAGTGCTATTTATGTTTGGGGTTACAATCAATCTGGGCAAACGGGTCGGAGAGGGAAAGAGAGGAGTTTGAGGATCCCAAAACAGCTTCCTCCAGAGCTATTTGGATGCCCAGCTGGTGGGAATTCCCGTTGGTTGGATATTGCTTGTGGTCGTGAGCATACTGCTGCTGTGGCTTCTGATGGATCGCTTTTTACATGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTAACGAATTTGGTCAGCTGGGTGACGGAACTGAAAATGCTAGGAAGCACCCCAAGAAAGTGAAACAATTGCAATCTGAATTTGTTATTAGTGTTTCATGTGGAGCACATTGTACTGTTGCCATTGCAGAACCACGTGAAAACGATGGTAGCATGTCAGCTCGGAGACTTTGGGTTTGGGGACAGAACCAG.....................................................................................GGATCCAATTACCCACGACTCTTTTGGGGTGCCTTTTCTCCTTCTACG.....................................................................................................................................................................................................................................................................................GTTATTCGCCAAGTTTCTTGTGGTGCTGTTCATGTTGTAGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E324745" ref_strand="+" ref_description="SGN-E324745 [cTOC-8-L20]">
      <seq>aggaattggcagtcctgtcctccctccatccaatttctgtggagctcaaactgcaaccttagattcttcaaattttccggataaaattacttccattgtttctcgatttcatctgagaaataaaatggatattgatgaaatacttggggtatctcggcctgtgagtttgacaaacaagagtgctatttatgtttggggttacaatcaatctgggcaaacgggtcggagagggaaagagaggagtttgaggatcccaaaacagcttcctccagagctatttggatgcccagctggtgggaattcccgttggttggatattgcttgtggtcgtgagcatactgctgctgtggcttctgatggatcgctttttacatggggagctaacgaatttggtcagctgggtgacggaactgaaaatgctaggaagcaccccaagaaagtgaaacaattgcaatctgaatttgttattagtgtttcatgtggagcacattgtactgttgccattgcagaaccacgtgaaaacgatggtagcatgtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="+" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="50701" stop="52680"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51001" g_stop="51113" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51114" i_stop="51231" i_length="118">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51232" g_stop="51495" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="377" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51496" i_stop="52219" i_length="724">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.792" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52220" g_stop="52380" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="538" r_length="161" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="+" ref_id="SGN-E324745" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324745" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51001" e_stop="51113"/>
          <exon e_start="51232" e_stop="51495"/>
          <exon e_start="52220" e_stop="52380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAATTGGCAGTCCTGTCCTCCCTCCATCCAATTTCTTTGGAGCTCAAACTGCAACCTTAGATTCTTCAAATTTTCCGGATAAAATTACTTCCATTGTTTCTCGATTTCATCGTAAGTTTTTCACTGCTTACATTTATTTTTTAGAGTCAAAGTTAGGGACTTGGGTTCAAAAACAGTAGTTAAAGATCATAGTTTTTTTTTGTAATTTATGGTTCATTTTTGTTGATAGTGAGAAATAAAATGGATATTGATGAAATACTTGGGGTATCTCGGCCTGTGAGTTTGACAAACAAGAGTGCTATTTATGTTTGGGGTTACAATCAATCTGGGCAAACGGGTCGGAGAGGGAAAGAGAGGAGTTTGAGGATCCCAAAACAGCTTCCTCCAGAGCTATTTGGATGCCCAGCTGGTGGGAATTCCCGTTGGTTGGATATTGCTTGTGGTCGTGAGCATACTGCTGCTGTGGCTTCTGATGGATCGCTTTTTACATGGGGTTTGCCCTTTATTTACCTTCACTTTTCAGTATCCATGTTTTACCTCTATTTCTGATTTCAATTGACTCTCGTTTACTTCATGCTTGCCCAAAGATTTGATCTTTTTTCATCAGCTGTCTCTGTATTTCTGATATAAATTGGGTGGAATGAAGAAAGAAAACCATGTTCTTTAGTTTGATCATGCTATCTGATGAAATTGGGTTGAGAAAGAGTTTCTGAAGATTGGGTGTAACCCAAGAATGTGCCAGTTATAGTATTTATCTTCCAAATGAATGATGAATTCTCATGTAAACTGTGGCATCTTTTAATTTTTCCCTAACATGGTTTGATCTCGGTTGGGGTTATCTATTTGCCTCTAAAACCCATTGCCTTATTCTTACTGATAAAAAGGTCATTGCTCTATTTTGTTGGTTATTTATTGCCTTTCTTAATTGATCTTGTTACATTTTGTGTATTTTTGCTCAAATAAATTCCTTGGTGTAATACTTGTTTTTTATTCCTTTACTCAAAGAGATATGTTGCAAAGAAGACATCGCCACTTTATGCATTTTAAGTTGATATAGAACAATTAATTTTACTTGTAAAGTTTACCTCTTTGGGAAAAATCTAGATTTTAATTGATATTTGACAATTAATTTCAGAAGTCTGTTCCTGCTTTTGTTTGTGGGGAAGTTGATTTTCCTTGTAAGAGAGAGCACTCCTAATCTTTATACCTTCAAACAGGAGCTAACGAATTTGGTCAGCTGGGTGACGGAACTGAAAATGCTAGGAAGCACCCCAAGAAAGTGAAACAATTGCAATCTGAATTTGTTATTAGTGTTTCATGTGGAGCACATTGTACTGTTGCCATTGCAGAACCACGTGAAAACGATGGTAGCATGTCA</genome_strand>
        <mrna_strand>AGGAATTGGCAGTCCTGTCCTCCCTCCATCCAATTTCTGTGGAGCTCAAACTGCAACCTTAGATTCTTCAAATTTTCCGGATAAAATTACTTCCATTGTTTCTCGATTTCATC......................................................................................................................TGAGAAATAAAATGGATATTGATGAAATACTTGGGGTATCTCGGCCTGTGAGTTTGACAAACAAGAGTGCTATTTATGTTTGGGGTTACAATCAATCTGGGCAAACGGGTCGGAGAGGGAAAGAGAGGAGTTTGAGGATCCCAAAACAGCTTCCTCCAGAGCTATTTGGATGCCCAGCTGGTGGGAATTCCCGTTGGTTGGATATTGCTTGTGGTCGTGAGCATACTGCTGCTGTGGCTTCTGATGGATCGCTTTTTACATGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTAACGAATTTGGTCAGCTGGGTGACGGAACTGAAAATGCTAGGAAGCACCCCAAGAAAGTGAAACAATTGCAATCTGAATTTGTTATTAGTGTTTCATGTGGAGCACATTGTACTGTTGCCATTGCAGAACCACGTGAAAACGATGGTAGCATGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E315045" ref_strand="+" ref_description="SGN-E315045 [cTOB-4-O6]">
      <seq>gcagtcctgtcctccctccatcctatttctttggagctcaaactgcaaccttagattcttcaaattttccggataaaattacttccattggttctcgatttcatctgagaaataaaatggatattgatgaaatacttggggtatctcggcctgtgagtttgacaaacaagagtgctatttatgtttggggttacaatcaatctgggccaacgggtcggagagggaaagagaggagtttgaggatcccaaaacacctttctccacagctatttggatgcccagctggtgggaattcccgttggttggatattgcttgtggtcgtgagcatactgctgctgtggcttctgatggatcgctttttacatggggagctaaccaatttggtcaactgggtgacggaactgaaaatgctatgaagcacccctagaaagtgaaacaattgccatctgaatttgggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="+" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="50709" stop="52611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51009" g_stop="51113" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51114" i_stop="51231" i_length="118">
            <donor d_prob="0.924" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51232" g_stop="51495" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="369" r_length="264" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51496" i_stop="52219" i_length="724">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.792" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52220" g_stop="52311" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="461" r_length="92" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="+" ref_id="SGN-E315045" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315045" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51009" e_stop="51113"/>
          <exon e_start="51232" e_stop="51495"/>
          <exon e_start="52220" e_stop="52311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGTCCTGTCCTCCCTCCATCCAATTTCTTTGGAGCTCAAACTGCAACCTTAGATTCTTCAAATTTTCCGGATAAAATTACTTCCATTGTTTCTCGATTTCATCGTAAGTTTTTCACTGCTTACATTTATTTTTTAGAGTCAAAGTTAGGGACTTGGGTTCAAAAACAGTAGTTAAAGATCATAGTTTTTTTTTGTAATTTATGGTTCATTTTTGTTGATAGTGAGAAATAAAATGGATATTGATGAAATACTTGGGGTATCTCGGCCTGTGAGTTTGACAAACAAGAGTGCTATTTATGTTTGGGGTTACAATCAATCTGGGCAAACGGGTCGGAGAGGGAAAGAGAGGAGTTTGAGGATCCCAAAACAGCTTCCTCCAGAGCTATTTGGATGCCCAGCTGGTGGGAATTCCCGTTGGTTGGATATTGCTTGTGGTCGTGAGCATACTGCTGCTGTGGCTTCTGATGGATCGCTTTTTACATGGGGTTTGCCCTTTATTTACCTTCACTTTTCAGTATCCATGTTTTACCTCTATTTCTGATTTCAATTGACTCTCGTTTACTTCATGCTTGCCCAAAGATTTGATCTTTTTTCATCAGCTGTCTCTGTATTTCTGATATAAATTGGGTGGAATGAAGAAAGAAAACCATGTTCTTTAGTTTGATCATGCTATCTGATGAAATTGGGTTGAGAAAGAGTTTCTGAAGATTGGGTGTAACCCAAGAATGTGCCAGTTATAGTATTTATCTTCCAAATGAATGATGAATTCTCATGTAAACTGTGGCATCTTTTAATTTTTCCCTAACATGGTTTGATCTCGGTTGGGGTTATCTATTTGCCTCTAAAACCCATTGCCTTATTCTTACTGATAAAAAGGTCATTGCTCTATTTTGTTGGTTATTTATTGCCTTTCTTAATTGATCTTGTTACATTTTGTGTATTTTTGCTCAAATAAATTCCTTGGTGTAATACTTGTTTTTTATTCCTTTACTCAAAGAGATATGTTGCAAAGAAGACATCGCCACTTTATGCATTTTAAGTTGATATAGAACAATTAATTTTACTTGTAAAGTTTACCTCTTTGGGAAAAATCTAGATTTTAATTGATATTTGACAATTAATTTCAGAAGTCTGTTCCTGCTTTTGTTTGTGGGGAAGTTGATTTTCCTTGTAAGAGAGAGCACTCCTAATCTTTATACCTTCAAACAGGAGCTAACGAATTTGGTCAGCTGGGTGACGGAACTGAAAATGCTAGGAAGCACCCCAAGAAAGTGAAACAATTGCAATCTGAATTTGTTATT</genome_strand>
        <mrna_strand>GCAGTCCTGTCCTCCCTCCATCCTATTTCTTTGGAGCTCAAACTGCAACCTTAGATTCTTCAAATTTTCCGGATAAAATTACTTCCATTGGTTCTCGATTTCATC......................................................................................................................TGAGAAATAAAATGGATATTGATGAAATACTTGGGGTATCTCGGCCTGTGAGTTTGACAAACAAGAGTGCTATTTATGTTTGGGGTTACAATCAATCTGGGCCAACGGGTCGGAGAGGGAAAGAGAGGAGTTTGAGGATCCCAAAACACCTTTCTCCACAGCTATTTGGATGCCCAGCTGGTGGGAATTCCCGTTGGTTGGATATTGCTTGTGGTCGTGAGCATACTGCTGCTGTGGCTTCTGATGGATCGCTTTTTACATGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTAACCAATTTGGTCAACTGGGTGACGGAACTGAAAATGCTATGAAGCACCCCTAGAAAGTGAAACAATTGCCATCTGAATTTGGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E549535" ref_strand="+" ref_description="SGN-E549535 [TUS-71-F1]">
      <seq>gtcctgtcctccctccatccataaaactcccaatttctttggagctcaaactgcaaccttagattcttcaaattttccggataaaattccttccattatatatctttttctcgatttcatcgtaagtttttcactgcctacatttattttttagagtcaaagttagggacttgggttcaaaaacagtagttaaagatcataggttttttttttttgtaatttatggttcatttttgttgatagtgaaaaataaaatggatattgatgaaatacttggggtatctcggcctgtgagtttgacaaacaagagtgcgatttatgtttggggttacaatcaatctgggcaaacgggtcggagagggaaagagaggagtttgaggatcccaaaacagcttcctccagagctatttggatgcccagctggtgggaattcccgttggttggatattgcttgtggtcgtgagcatactgctgctgtggcttctgatggatcgctttttacatggggagctaacgaatttggtcagctgggtgacggaactgaaaatgctaggaagcaccccaagaaagtgaaacaattgcaatctgaatttgttattagtgtttcatgtggagcacattgtactgttgccattgcagaaccacgtgaaaacgatggtagcatgtcaactcggagactttgggtttggggacagaaccaggggatcaattacccacgactcttttggggtgccttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="+" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="50712" stop="52836"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51030" g_stop="51495" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="507" r_length="478" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51496" i_stop="52219" i_length="724">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.792" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52220" g_stop="52413" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="701" r_length="194" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52414" i_stop="52498" i_length="85">
            <donor d_prob="0.923" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52499" g_stop="52536" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="702" r_stop="739" r_length="38" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="+" ref_id="SGN-E549535" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51030" e_stop="51495"/>
          <exon e_start="52220" e_stop="52413"/>
          <exon e_start="52499" e_stop="52536"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATTTCTTTGGAGCTCAAACTGCAACCTTAGATTCTTCAAATTTTCCGGATAAAATTACTTCC-----AT-TGT--TTCTCGATTTCATCGTAAGTTTTTCACTGCTTACATTTATTTTTTAGAGTCAAAGTTAGGGACTTGGGTTCAAAAACAGTAGTTAAAGATCATA-G---TTTTTTTTTGTAATTTATGGTTCATTTTTGTTGATAGTGAGAAATAAAATGGATATTGATGAAATACTTGGGGTATCTCGGCCTGTGAGTTTGACAAACAAGAGTGCTATTTATGTTTGGGGTTACAATCAATCTGGGCAAACGGGTCGGAGAGGGAAAGAGAGGAGTTTGAGGATCCCAAAACAGCTTCCTCCAGAGCTATTTGGATGCCCAGCTGGTGGGAATTCCCGTTGGTTGGATATTGCTTGTGGTCGTGAGCATACTGCTGCTGTGGCTTCTGATGGATCGCTTTTTACATGGGGTTTGCCCTTTATTTACCTTCACTTTTCAGTATCCATGTTTTACCTCTATTTCTGATTTCAATTGACTCTCGTTTACTTCATGCTTGCCCAAAGATTTGATCTTTTTTCATCAGCTGTCTCTGTATTTCTGATATAAATTGGGTGGAATGAAGAAAGAAAACCATGTTCTTTAGTTTGATCATGCTATCTGATGAAATTGGGTTGAGAAAGAGTTTCTGAAGATTGGGTGTAACCCAAGAATGTGCCAGTTATAGTATTTATCTTCCAAATGAATGATGAATTCTCATGTAAACTGTGGCATCTTTTAATTTTTCCCTAACATGGTTTGATCTCGGTTGGGGTTATCTATTTGCCTCTAAAACCCATTGCCTTATTCTTACTGATAAAAAGGTCATTGCTCTATTTTGTTGGTTATTTATTGCCTTTCTTAATTGATCTTGTTACATTTTGTGTATTTTTGCTCAAATAAATTCCTTGGTGTAATACTTGTTTTTTATTCCTTTACTCAAAGAGATATGTTGCAAAGAAGACATCGCCACTTTATGCATTTTAAGTTGATATAGAACAATTAATTTTACTTGTAAAGTTTACCTCTTTGGGAAAAATCTAGATTTTAATTGATATTTGACAATTAATTTCAGAAGTCTGTTCCTGCTTTTGTTTGTGGGGAAGTTGATTTTCCTTGTAAGAGAGAGCACTCCTAATCTTTATACCTTCAAACAGGAGCTAACGAATTTGGTCAGCTGGGTGACGGAACTGAAAATGCTAGGAAGCACCCCAAGAAAGTGAAACAATTGCAATCTGAATTTGTTATTAGTGTTTCATGTGGAGCACATTGTACTGTTGCCATTGCAGAACCACGTGAAAACGATGGTAGCATGTCAGCTCGGAGACTTTGGGTTTGGGGACAGAACCAGGTCAGTCTCACAAAAAAAAAAACCTTCAAGCAGCTACCTTGTTTATTTGAGATCACAATTTGTTTGCCTGTGTTATTCTATGCAGGGATCCAATTACCCACGACTCTTTTGGGGTGCCTTTTC</genome_strand>
        <mrna_strand>CCAATTTCTTTGGAGCTCAAACTGCAACCTTAGATTCTTCAAATTTTCCGGATAAAATTCCTTCCATTATATATCTTTTTCTCGATTTCATCGTAAGTTTTTCACTGCCTACATTTATTTTTTAGAGTCAAAGTTAGGGACTTGGGTTCAAAAACAGTAGTTAAAGATCATAGGTTTTTTTTTTTTGTAATTTATGGTTCATTTTTGTTGATAGTGAAAAATAAAATGGATATTGATGAAATACTTGGGGTATCTCGGCCTGTGAGTTTGACAAACAAGAGTGCGATTTATGTTTGGGGTTACAATCAATCTGGGCAAACGGGTCGGAGAGGGAAAGAGAGGAGTTTGAGGATCCCAAAACAGCTTCCTCCAGAGCTATTTGGATGCCCAGCTGGTGGGAATTCCCGTTGGTTGGATATTGCTTGTGGTCGTGAGCATACTGCTGCTGTGGCTTCTGATGGATCGCTTTTTACATGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTAACGAATTTGGTCAGCTGGGTGACGGAACTGAAAATGCTAGGAAGCACCCCAAGAAAGTGAAACAATTGCAATCTGAATTTGTTATTAGTGTTTCATGTGGAGCACATTGTACTGTTGCCATTGCAGAACCACGTGAAAACGATGGTAGCATGTCAACTCGGAGACTTTGGGTTTGGGGACAGAACCAG.....................................................................................GGGATCAATTACCCACGACTCTTTTGGGGTGCCTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E361795" ref_strand="+" ref_description="SGN-E361795 [cLPP-12-O7]">
      <seq>tcctgtcctccctccatccataaaactcccaatttctttggagctcaaactgcaaccttagattcttcaaattttccggataaaattccttccattatatatctttttctcgatttcatcgtaagtttttcactgcctacatttattttttagagtcaaagttagggacttgggttcaaaaacagtagttaaagatcataggttttttttttttgtaatttatggttcatttttgttgatagtgaaaaataaaatggatattgatgaaatacttggggtatctcggcctgtgagtttgacaaacaagagtgcgatttatgtttggggttacaatcaatctgggcaaacgggtcggagagggaaagagaggagtttgaggatcccaaaacagcttcctccagagctatttggatgcccagctggtggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="+" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="50713" stop="51717"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51030" g_stop="51417" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="428" r_length="400" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="+" ref_id="SGN-E361795" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361795" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51030" e_stop="51417"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATTTCTTTGGAGCTCAAACTGCAACCTTAGATTCTTCAAATTTTCCGGATAAAATTACTTCC-----AT-TGT--TTCTCGATTTCATCGTAAGTTTTTCACTGCTTACATTTATTTTTTAGAGTCAAAGTTAGGGACTTGGGTTCAAAAACAGTAGTTAAAGATCATA-G---TTTTTTTTTGTAATTTATGGTTCATTTTTGTTGATAGTGAGAAATAAAATGGATATTGATGAAATACTTGGGGTATCTCGGCCTGTGAGTTTGACAAACAAGAGTGCTATTTATGTTTGGGGTTACAATCAATCTGGGCAAACGGGTCGGAGAGGGAAAGAGAGGAGTTTGAGGATCCCAAAACAGCTTCCTCCAGAGCTATTTGGATGCCCAGCTGGTGGGA</genome_strand>
        <mrna_strand>CCAATTTCTTTGGAGCTCAAACTGCAACCTTAGATTCTTCAAATTTTCCGGATAAAATTCCTTCCATTATATATCTTTTTCTCGATTTCATCGTAAGTTTTTCACTGCCTACATTTATTTTTTAGAGTCAAAGTTAGGGACTTGGGTTCAAAAACAGTAGTTAAAGATCATAGGTTTTTTTTTTTTGTAATTTATGGTTCATTTTTGTTGATAGTGAAAAATAAAATGGATATTGATGAAATACTTGGGGTATCTCGGCCTGTGAGTTTGACAAACAAGAGTGCGATTTATGTTTGGGGTTACAATCAATCTGGGCAAACGGGTCGGAGAGGGAAAGAGAGGAGTTTGAGGATCCCAAAACAGCTTCCTCCAGAGCTATTTGGATGCCCAGCTGGTGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E543743" ref_strand="+" ref_description="SGN-E543743 [TUS-65-L12]">
      <seq>atttctttggagctcaaactgcaaccttagattcttcaaattttccggataaaattacttccattgtttctcgatttcatctgagaaataaaatggatattgatgaaatacttggggtatctcggcctgtgagtttgacaaacaagagtgctatttatgtttggggttacaatcaatctgggcaaacgggtcggagagggaaagagaggagtttgaggatcccaaaacagcttcctccagagctatttggatgcccagctggtgggaattcccgttggttggatattgcttgtggtcgtgagcatactgctgctgtggcttctgatggatcgctttttacatggggagctaacgaatttggtcagctgggtgacggaactgaaaatgctaggaagcaccccaagaaagtgaaacaattgcaatctgaatttgttattagtgtttcatgtggagcacattgtactgttgccattgcagaaccacgtgaaaacgatggtagcatgtcagctcggagactttgggtttggggacagaaccagggatccaattacccacgactcttttggggtgccttttctccttctacggttattcgccaagtttcttgtggtgctgttcatgttgtagctctatcagaagaagggttactacaagcttggggctataatgaatatggtcagcttggcagaggtgttacatcagaaagccttcaaggcccttgtgtaattaatggatatgctagaattcttgatgaagcccctgaacttgtgaagattacccaagtgtcatgcggggagtaccatactgcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="+" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="50733" stop="53563"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51033" g_stop="51113" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51114" i_stop="51231" i_length="118">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51232" g_stop="51495" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="345" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51496" i_stop="52219" i_length="724">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.792" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52220" g_stop="52413" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="539" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52414" i_stop="52498" i_length="85">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52499" g_stop="52546" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="587" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52547" i_stop="52823" i_length="277">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52824" g_stop="52896" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="660" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52897" i_stop="53112" i_length="216">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="53113" g_stop="53263" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="661" r_stop="811" r_length="151" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="+" ref_id="SGN-E543743" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>811</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543743" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51033" e_stop="51113"/>
          <exon e_start="51232" e_stop="51495"/>
          <exon e_start="52220" e_stop="52413"/>
          <exon e_start="52499" e_stop="52546"/>
          <exon e_start="52824" e_stop="52896"/>
          <exon e_start="53113" e_stop="53263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCTTTGGAGCTCAAACTGCAACCTTAGATTCTTCAAATTTTCCGGATAAAATTACTTCCATTGTTTCTCGATTTCATCGTAAGTTTTTCACTGCTTACATTTATTTTTTAGAGTCAAAGTTAGGGACTTGGGTTCAAAAACAGTAGTTAAAGATCATAGTTTTTTTTTGTAATTTATGGTTCATTTTTGTTGATAGTGAGAAATAAAATGGATATTGATGAAATACTTGGGGTATCTCGGCCTGTGAGTTTGACAAACAAGAGTGCTATTTATGTTTGGGGTTACAATCAATCTGGGCAAACGGGTCGGAGAGGGAAAGAGAGGAGTTTGAGGATCCCAAAACAGCTTCCTCCAGAGCTATTTGGATGCCCAGCTGGTGGGAATTCCCGTTGGTTGGATATTGCTTGTGGTCGTGAGCATACTGCTGCTGTGGCTTCTGATGGATCGCTTTTTACATGGGGTTTGCCCTTTATTTACCTTCACTTTTCAGTATCCATGTTTTACCTCTATTTCTGATTTCAATTGACTCTCGTTTACTTCATGCTTGCCCAAAGATTTGATCTTTTTTCATCAGCTGTCTCTGTATTTCTGATATAAATTGGGTGGAATGAAGAAAGAAAACCATGTTCTTTAGTTTGATCATGCTATCTGATGAAATTGGGTTGAGAAAGAGTTTCTGAAGATTGGGTGTAACCCAAGAATGTGCCAGTTATAGTATTTATCTTCCAAATGAATGATGAATTCTCATGTAAACTGTGGCATCTTTTAATTTTTCCCTAACATGGTTTGATCTCGGTTGGGGTTATCTATTTGCCTCTAAAACCCATTGCCTTATTCTTACTGATAAAAAGGTCATTGCTCTATTTTGTTGGTTATTTATTGCCTTTCTTAATTGATCTTGTTACATTTTGTGTATTTTTGCTCAAATAAATTCCTTGGTGTAATACTTGTTTTTTATTCCTTTACTCAAAGAGATATGTTGCAAAGAAGACATCGCCACTTTATGCATTTTAAGTTGATATAGAACAATTAATTTTACTTGTAAAGTTTACCTCTTTGGGAAAAATCTAGATTTTAATTGATATTTGACAATTAATTTCAGAAGTCTGTTCCTGCTTTTGTTTGTGGGGAAGTTGATTTTCCTTGTAAGAGAGAGCACTCCTAATCTTTATACCTTCAAACAGGAGCTAACGAATTTGGTCAGCTGGGTGACGGAACTGAAAATGCTAGGAAGCACCCCAAGAAAGTGAAACAATTGCAATCTGAATTTGTTATTAGTGTTTCATGTGGAGCACATTGTACTGTTGCCATTGCAGAACCACGTGAAAACGATGGTAGCATGTCAGCTCGGAGACTTTGGGTTTGGGGACAGAACCAGGTCAGTCTCACAAAAAAAAAAACCTTCAAGCAGCTACCTTGTTTATTTGAGATCACAATTTGTTTGCCTGTGTTATTCTATGCAGGGATCCAATTACCCACGACTCTTTTGGGGTGCCTTTTCTCCTTCTACGGTACTATTTTTTCTTGAGAATGAACTTTTGTGGAGATATCTGTGTTTTTCATGCAAATACATTACTTCTGTTCTGTGTGGTCCTAGTGGGGCTTAAGCATTTATCTAGTCGCATTTATGTTATGATAGCAGATTTACCTTTACCTGAGTTCTCTATCTAATCTATGCCCCCAATTTTTTTGTTAAGAAGTTGCTTTCCATACAAAAACAACGGTGACTTAACATTCGCAGTGCGCAACAAATTTTATGATATATGTATGCTCTTTCAATTCATTCAGGTTATTCGCCAAGTTTCTTGTGGTGCTGTTCATGTTGTAGCTCTATCAGAAGAAGGGTTACTACAAGCTTGGGGTAATTTGCACTTTCTTAATTCACCTTTATATACAATTCTATGCTTAACATATCCTCTCAGTAATTTTGATGAAATCAGTGCACATATGTGTATGGATCTCTGTATGTGATTTTAATTTTTATGTGTACATCCTCTATCAGGTTACACAGCCTTAGAGTTAAAAACATATTGTGTCATGTATTAATGAAAATTTTGTCACTGCGCTGGTTAAGCAGGCTATAATGAATATGGTCAGCTTGGCAGAGGTGTTACATCAGAAGGCCTTCAAGGCCCTTGTGTAATTAATGGATATGCTAGATTTCTTGATGAAGCCCCTGAACTTGTGAAGATTACCCAAGTGTCATGCGGGGAGTACCATACTGCAGC</genome_strand>
        <mrna_strand>ATTTCTTTGGAGCTCAAACTGCAACCTTAGATTCTTCAAATTTTCCGGATAAAATTACTTCCATTGTTTCTCGATTTCATC......................................................................................................................TGAGAAATAAAATGGATATTGATGAAATACTTGGGGTATCTCGGCCTGTGAGTTTGACAAACAAGAGTGCTATTTATGTTTGGGGTTACAATCAATCTGGGCAAACGGGTCGGAGAGGGAAAGAGAGGAGTTTGAGGATCCCAAAACAGCTTCCTCCAGAGCTATTTGGATGCCCAGCTGGTGGGAATTCCCGTTGGTTGGATATTGCTTGTGGTCGTGAGCATACTGCTGCTGTGGCTTCTGATGGATCGCTTTTTACATGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTAACGAATTTGGTCAGCTGGGTGACGGAACTGAAAATGCTAGGAAGCACCCCAAGAAAGTGAAACAATTGCAATCTGAATTTGTTATTAGTGTTTCATGTGGAGCACATTGTACTGTTGCCATTGCAGAACCACGTGAAAACGATGGTAGCATGTCAGCTCGGAGACTTTGGGTTTGGGGACAGAACCAG.....................................................................................GGATCCAATTACCCACGACTCTTTTGGGGTGCCTTTTCTCCTTCTACG.....................................................................................................................................................................................................................................................................................GTTATTCGCCAAGTTTCTTGTGGTGCTGTTCATGTTGTAGCTCTATCAGAAGAAGGGTTACTACAAGCTTGGG........................................................................................................................................................................................................................GCTATAATGAATATGGTCAGCTTGGCAGAGGTGTTACATCAGAAAGCCTTCAAGGCCCTTGTGTAATTAATGGATATGCTAGAATTCTTGATGAAGCCCCTGAACTTGTGAAGATTACCCAAGTGTCATGCGGGGAGTACCATACTGCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E304310" ref_strand="+" ref_description="SGN-E304310 [cLEX-12-O1]">
      <seq>tttctttggagctcaaactgcaaccttagattcttcaaattttccggataaaattacttccattgtttctcgatttcatctgagaaataaaatggatattgatgaaatacttggggtatctcggcctgtgagtttgacaaacaagagtgctatttatgtttggggttacaatcaatctgggcaaacgggtcggagagggaaagagaggagtttgaggatcccaaaacagcttcctccagagctatttggatgcccagctggtgggaattcccgttggttggatattgcttgtggtcgtgagcatactgctgctgtggcttctgatggatcgctttttacatggggagctaacgaatttggtcagctgggtgacggaactgaaaatgctaggaagcaccccaagaaagtgaaacaattgcaatctgaatttgttattagtgtttcatgtggagcacattgtactgttgccattgcagaaccacgtgaaaacgatggtagcatgtcagctcggagactttgggtttgggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="+" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="50734" stop="52704"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51034" g_stop="51113" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51114" i_stop="51231" i_length="118">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51232" g_stop="51495" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="344" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51496" i_stop="52219" i_length="724">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.792" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52220" g_stop="52404" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="529" r_length="185" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="+" ref_id="SGN-E304310" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51034" e_stop="51113"/>
          <exon e_start="51232" e_stop="51495"/>
          <exon e_start="52220" e_stop="52404"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTTGGAGCTCAAACTGCAACCTTAGATTCTTCAAATTTTCCGGATAAAATTACTTCCATTGTTTCTCGATTTCATCGTAAGTTTTTCACTGCTTACATTTATTTTTTAGAGTCAAAGTTAGGGACTTGGGTTCAAAAACAGTAGTTAAAGATCATAGTTTTTTTTTGTAATTTATGGTTCATTTTTGTTGATAGTGAGAAATAAAATGGATATTGATGAAATACTTGGGGTATCTCGGCCTGTGAGTTTGACAAACAAGAGTGCTATTTATGTTTGGGGTTACAATCAATCTGGGCAAACGGGTCGGAGAGGGAAAGAGAGGAGTTTGAGGATCCCAAAACAGCTTCCTCCAGAGCTATTTGGATGCCCAGCTGGTGGGAATTCCCGTTGGTTGGATATTGCTTGTGGTCGTGAGCATACTGCTGCTGTGGCTTCTGATGGATCGCTTTTTACATGGGGTTTGCCCTTTATTTACCTTCACTTTTCAGTATCCATGTTTTACCTCTATTTCTGATTTCAATTGACTCTCGTTTACTTCATGCTTGCCCAAAGATTTGATCTTTTTTCATCAGCTGTCTCTGTATTTCTGATATAAATTGGGTGGAATGAAGAAAGAAAACCATGTTCTTTAGTTTGATCATGCTATCTGATGAAATTGGGTTGAGAAAGAGTTTCTGAAGATTGGGTGTAACCCAAGAATGTGCCAGTTATAGTATTTATCTTCCAAATGAATGATGAATTCTCATGTAAACTGTGGCATCTTTTAATTTTTCCCTAACATGGTTTGATCTCGGTTGGGGTTATCTATTTGCCTCTAAAACCCATTGCCTTATTCTTACTGATAAAAAGGTCATTGCTCTATTTTGTTGGTTATTTATTGCCTTTCTTAATTGATCTTGTTACATTTTGTGTATTTTTGCTCAAATAAATTCCTTGGTGTAATACTTGTTTTTTATTCCTTTACTCAAAGAGATATGTTGCAAAGAAGACATCGCCACTTTATGCATTTTAAGTTGATATAGAACAATTAATTTTACTTGTAAAGTTTACCTCTTTGGGAAAAATCTAGATTTTAATTGATATTTGACAATTAATTTCAGAAGTCTGTTCCTGCTTTTGTTTGTGGGGAAGTTGATTTTCCTTGTAAGAGAGAGCACTCCTAATCTTTATACCTTCAAACAGGAGCTAACGAATTTGGTCAGCTGGGTGACGGAACTGAAAATGCTAGGAAGCACCCCAAGAAAGTGAAACAATTGCAATCTGAATTTGTTATTAGTGTTTCATGTGGAGCACATTGTACTGTTGCCATTGCAGAACCACGTGAAAACGATGGTAGCATGTCAGCTCGGAGACTTTGGGTTTGGGGA</genome_strand>
        <mrna_strand>TTTCTTTGGAGCTCAAACTGCAACCTTAGATTCTTCAAATTTTCCGGATAAAATTACTTCCATTGTTTCTCGATTTCATC......................................................................................................................TGAGAAATAAAATGGATATTGATGAAATACTTGGGGTATCTCGGCCTGTGAGTTTGACAAACAAGAGTGCTATTTATGTTTGGGGTTACAATCAATCTGGGCAAACGGGTCGGAGAGGGAAAGAGAGGAGTTTGAGGATCCCAAAACAGCTTCCTCCAGAGCTATTTGGATGCCCAGCTGGTGGGAATTCCCGTTGGTTGGATATTGCTTGTGGTCGTGAGCATACTGCTGCTGTGGCTTCTGATGGATCGCTTTTTACATGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTAACGAATTTGGTCAGCTGGGTGACGGAACTGAAAATGCTAGGAAGCACCCCAAGAAAGTGAAACAATTGCAATCTGAATTTGTTATTAGTGTTTCATGTGGAGCACATTGTACTGTTGCCATTGCAGAACCACGTGAAAACGATGGTAGCATGTCAGCTCGGAGACTTTGGGTTTGGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E345846" ref_strand="+" ref_description="SGN-E345846 [cTOF-24-C19]">
      <seq>gatattgatgaaatacttggggtatctcggcctgtgagtttgacaaacaagagtgctatttatgtttggggttacaatcaatctgggcaaacgggtcggagagggaaagagaggagtttgaggatcccaaaacagcttcctccagagctatttggatgcccagctggtgggaattcccgttggttggatattgcttgtggtcgtgagcatactgctgctgtggcttctgatggatcgctttttacatggggagctaacgaatttggtcagctgggtgacggaactgaaaatgctaggaagcaccccaagaaagtgaaacaattgcaatctgaatttgttattagtgtttcatgtggagcacattgtactgttgccattgcagaaccacgtgaaaacgatggtagcatgtcagctcggagactttgggtttggggacagaaccagggatccaattacccacgactcttttggggtgccttttctccttctacggttattcgccaagtttcttgtggtgctgttcatgttgtagctctatcagaagaagggttactacaagcttggggctataatgaatatggtcagcttggcagaggtgttacatcagaaggccttcaaggcccttgtgtaattaatggatatgctagatttcttgatgaagcccctgaacttgtgaagattacccaagtgtcatgcggggagtaccatactgcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="+" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="50946" stop="53563"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51246" g_stop="51495" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51496" i_stop="52219" i_length="724">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.792" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52220" g_stop="52413" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="444" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52414" i_stop="52498" i_length="85">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52499" g_stop="52546" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="492" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52547" i_stop="52823" i_length="277">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52824" g_stop="52896" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="565" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52897" i_stop="53112" i_length="216">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53113" g_stop="53263" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="716" r_length="151" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="+" ref_id="SGN-E345846" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345846" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51246" e_stop="51495"/>
          <exon e_start="52220" e_stop="52413"/>
          <exon e_start="52499" e_stop="52546"/>
          <exon e_start="52824" e_stop="52896"/>
          <exon e_start="53113" e_stop="53263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATTGATGAAATACTTGGGGTATCTCGGCCTGTGAGTTTGACAAACAAGAGTGCTATTTATGTTTGGGGTTACAATCAATCTGGGCAAACGGGTCGGAGAGGGAAAGAGAGGAGTTTGAGGATCCCAAAACAGCTTCCTCCAGAGCTATTTGGATGCCCAGCTGGTGGGAATTCCCGTTGGTTGGATATTGCTTGTGGTCGTGAGCATACTGCTGCTGTGGCTTCTGATGGATCGCTTTTTACATGGGGTTTGCCCTTTATTTACCTTCACTTTTCAGTATCCATGTTTTACCTCTATTTCTGATTTCAATTGACTCTCGTTTACTTCATGCTTGCCCAAAGATTTGATCTTTTTTCATCAGCTGTCTCTGTATTTCTGATATAAATTGGGTGGAATGAAGAAAGAAAACCATGTTCTTTAGTTTGATCATGCTATCTGATGAAATTGGGTTGAGAAAGAGTTTCTGAAGATTGGGTGTAACCCAAGAATGTGCCAGTTATAGTATTTATCTTCCAAATGAATGATGAATTCTCATGTAAACTGTGGCATCTTTTAATTTTTCCCTAACATGGTTTGATCTCGGTTGGGGTTATCTATTTGCCTCTAAAACCCATTGCCTTATTCTTACTGATAAAAAGGTCATTGCTCTATTTTGTTGGTTATTTATTGCCTTTCTTAATTGATCTTGTTACATTTTGTGTATTTTTGCTCAAATAAATTCCTTGGTGTAATACTTGTTTTTTATTCCTTTACTCAAAGAGATATGTTGCAAAGAAGACATCGCCACTTTATGCATTTTAAGTTGATATAGAACAATTAATTTTACTTGTAAAGTTTACCTCTTTGGGAAAAATCTAGATTTTAATTGATATTTGACAATTAATTTCAGAAGTCTGTTCCTGCTTTTGTTTGTGGGGAAGTTGATTTTCCTTGTAAGAGAGAGCACTCCTAATCTTTATACCTTCAAACAGGAGCTAACGAATTTGGTCAGCTGGGTGACGGAACTGAAAATGCTAGGAAGCACCCCAAGAAAGTGAAACAATTGCAATCTGAATTTGTTATTAGTGTTTCATGTGGAGCACATTGTACTGTTGCCATTGCAGAACCACGTGAAAACGATGGTAGCATGTCAGCTCGGAGACTTTGGGTTTGGGGACAGAACCAGGTCAGTCTCACAAAAAAAAAAACCTTCAAGCAGCTACCTTGTTTATTTGAGATCACAATTTGTTTGCCTGTGTTATTCTATGCAGGGATCCAATTACCCACGACTCTTTTGGGGTGCCTTTTCTCCTTCTACGGTACTATTTTTTCTTGAGAATGAACTTTTGTGGAGATATCTGTGTTTTTCATGCAAATACATTACTTCTGTTCTGTGTGGTCCTAGTGGGGCTTAAGCATTTATCTAGTCGCATTTATGTTATGATAGCAGATTTACCTTTACCTGAGTTCTCTATCTAATCTATGCCCCCAATTTTTTTGTTAAGAAGTTGCTTTCCATACAAAAACAACGGTGACTTAACATTCGCAGTGCGCAACAAATTTTATGATATATGTATGCTCTTTCAATTCATTCAGGTTATTCGCCAAGTTTCTTGTGGTGCTGTTCATGTTGTAGCTCTATCAGAAGAAGGGTTACTACAAGCTTGGGGTAATTTGCACTTTCTTAATTCACCTTTATATACAATTCTATGCTTAACATATCCTCTCAGTAATTTTGATGAAATCAGTGCACATATGTGTATGGATCTCTGTATGTGATTTTAATTTTTATGTGTACATCCTCTATCAGGTTACACAGCCTTAGAGTTAAAAACATATTGTGTCATGTATTAATGAAAATTTTGTCACTGCGCTGGTTAAGCAGGCTATAATGAATATGGTCAGCTTGGCAGAGGTGTTACATCAGAAGGCCTTCAAGGCCCTTGTGTAATTAATGGATATGCTAGATTTCTTGATGAAGCCCCTGAACTTGTGAAGATTACCCAAGTGTCATGCGGGGAGTACCATACTGCAGC</genome_strand>
        <mrna_strand>GATATTGATGAAATACTTGGGGTATCTCGGCCTGTGAGTTTGACAAACAAGAGTGCTATTTATGTTTGGGGTTACAATCAATCTGGGCAAACGGGTCGGAGAGGGAAAGAGAGGAGTTTGAGGATCCCAAAACAGCTTCCTCCAGAGCTATTTGGATGCCCAGCTGGTGGGAATTCCCGTTGGTTGGATATTGCTTGTGGTCGTGAGCATACTGCTGCTGTGGCTTCTGATGGATCGCTTTTTACATGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTAACGAATTTGGTCAGCTGGGTGACGGAACTGAAAATGCTAGGAAGCACCCCAAGAAAGTGAAACAATTGCAATCTGAATTTGTTATTAGTGTTTCATGTGGAGCACATTGTACTGTTGCCATTGCAGAACCACGTGAAAACGATGGTAGCATGTCAGCTCGGAGACTTTGGGTTTGGGGACAGAACCAG.....................................................................................GGATCCAATTACCCACGACTCTTTTGGGGTGCCTTTTCTCCTTCTACG.....................................................................................................................................................................................................................................................................................GTTATTCGCCAAGTTTCTTGTGGTGCTGTTCATGTTGTAGCTCTATCAGAAGAAGGGTTACTACAAGCTTGGG........................................................................................................................................................................................................................GCTATAATGAATATGGTCAGCTTGGCAGAGGTGTTACATCAGAAGGCCTTCAAGGCCCTTGTGTAATTAATGGATATGCTAGATTTCTTGATGAAGCCCCTGAACTTGTGAAGATTACCCAAGTGTCATGCGGGGAGTACCATACTGCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E326651" ref_strand="+" ref_description="SGN-E326651 [cTOC-17-K4]">
      <seq>tgaatttgttattagtgtttcatgtggagcacattgtactgttgccattgcagaaccacgtgaaaacgatggtagcatgtcagctcggagactttgggtttggggacagaaccagggatccaattacccacgactcttttggggtgccttttctccttctacggttattcgccaagtttcttgtggtgctgttcatgttgtagctctatcagaagaagggttactacaagcttggggctataatgaatatggtcagcttggcagaggtgttacatcagaaggccttcaaggcccttgtgtaattaatggatatgctagatttcttgatgaagcccctgaacttgtgaagattacccaagtgtcatgcggggagtaccatactgcagctatatcagagaaaggcgaggtctatacgtggggattggggagcgtgggacaacttggccattgttcacttcagtcaggtgacaaggaacttttacctaggcgtgtagtttcccttgatggcatatgtattaaagaagttgccttgtggtggtgttcacacctgtgctgtgactgcgaaaggggctctttatgcttgnnggtggangtcaggctgggcaatttgggagttgggccattaaatggattcttttcatgcaagctcaatgaatctgagatgatgctccgaaatataccagtgttggttgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="+" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="51999" stop="55383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52299" g_stop="52413" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52414" i_stop="52498" i_length="85">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52499" g_stop="52546" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="163" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52547" i_stop="52823" i_length="277">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52824" g_stop="52896" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="236" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52897" i_stop="53112" i_length="216">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53113" g_stop="53284" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="408" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53285" i_stop="54800" i_length="1516">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54801" g_stop="55083" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="694" r_length="286" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="+" ref_id="SGN-E326651" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326651" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52299" e_stop="52413"/>
          <exon e_start="52499" e_stop="52546"/>
          <exon e_start="52824" e_stop="52896"/>
          <exon e_start="53113" e_stop="53284"/>
          <exon e_start="54801" e_stop="55083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATTTGTTATTAGTGTTTCATGTGGAGCACATTGTACTGTTGCCATTGCAGAACCACGTGAAAACGATGGTAGCATGTCAGCTCGGAGACTTTGGGTTTGGGGACAGAACCAGGTCAGTCTCACAAAAAAAAAAACCTTCAAGCAGCTACCTTGTTTATTTGAGATCACAATTTGTTTGCCTGTGTTATTCTATGCAGGGATCCAATTACCCACGACTCTTTTGGGGTGCCTTTTCTCCTTCTACGGTACTATTTTTTCTTGAGAATGAACTTTTGTGGAGATATCTGTGTTTTTCATGCAAATACATTACTTCTGTTCTGTGTGGTCCTAGTGGGGCTTAAGCATTTATCTAGTCGCATTTATGTTATGATAGCAGATTTACCTTTACCTGAGTTCTCTATCTAATCTATGCCCCCAATTTTTTTGTTAAGAAGTTGCTTTCCATACAAAAACAACGGTGACTTAACATTCGCAGTGCGCAACAAATTTTATGATATATGTATGCTCTTTCAATTCATTCAGGTTATTCGCCAAGTTTCTTGTGGTGCTGTTCATGTTGTAGCTCTATCAGAAGAAGGGTTACTACAAGCTTGGGGTAATTTGCACTTTCTTAATTCACCTTTATATACAATTCTATGCTTAACATATCCTCTCAGTAATTTTGATGAAATCAGTGCACATATGTGTATGGATCTCTGTATGTGATTTTAATTTTTATGTGTACATCCTCTATCAGGTTACACAGCCTTAGAGTTAAAAACATATTGTGTCATGTATTAATGAAAATTTTGTCACTGCGCTGGTTAAGCAGGCTATAATGAATATGGTCAGCTTGGCAGAGGTGTTACATCAGAAGGCCTTCAAGGCCCTTGTGTAATTAATGGATATGCTAGATTTCTTGATGAAGCCCCTGAACTTGTGAAGATTACCCAAGTGTCATGCGGGGAGTACCATACTGCAGCTATATCAGAGAAAGGCGAGGTGTAAGTGTTCATTGGACCTTTCTTGATGGAGATAAGTTTTGATGCTAAACATGAGAATATGGTTATCCGCATGGCACAAGTGGACGTGGATTTCAGGGAAAATAAACCATAAAGATACACTACTTAATTTGCAGGATTTGTTTTTTCCATTTGTGGAACTTCTCTAATTTAATTGAAGTTGCCTGGTCCAACTGAAATATTACGTTTGTAAATTTCCTCATGGCTTCTGGATTTGATTATAGGATTTTGTTGGATAGTCATTACTAAGAAGATACCTAGAAACTACCCCATTTAGACATACACACTAGAAAAGGAAGATAGAGTTGTTCAGTTCTCTAGGAAGTTAAATGAATCTTCTGCTATTACTTTTAGTTTCTTTAGTAGAGACTTAGCATGATTGCTGCATTTTTCAGTATTCCTGTCTTAACTTTGTATGAGGGAAACAGTGGTGCATCCTTACTCATTTCTCCTTATGAGGTGGTATCAGTTTTGCTATGCATTAACTAAAATTTTGTTGTCTGAGTTTGTGTTAATTTGTATTCACTTTACTTAATTCTTCTGTTCACATGTTAGCTCTTTTAAATTTTTTGGTTATTTCGATCTTTTTTTTTAATTTGATGACCGTGGTGTCTGGACCAACTTTTGTGCACTTAGACGCATTCCACAGGATACCTGCCACGTCCTACTAGCAACAGAAGGTTAGAACAGATGGGAAGAATCATGATAAGTAGGGATTTTTTTTCATGAAGTTCTTTGAGATAATAAATTTCCTTCCAGAAAAGACCCCTAATAATATTGTACTAACATTTGCTTATGTTATAGCAAAGCTAAGTTCTCTTGTTTGCTAGTTCTTTCTTATGCTGGTACGAATTTCTTACCATAAATTGAACTTTTCTTGTGCTGTGATAAACACATCCATGCTCTCCCGAAAACTCTTAAATCAGAAGCGAATTGTGGCCCTCTCTCTACAATAAAAATAACTTTTAGCGGCAATAAATAGATACATTAATAAAGAGTGCTAAAGTCTTTACCGGCATTAGTTAAGTGTCATTAGATCCAATGTCGCTAAAGCCTTTAGTGACACATACAAAGAGTGCTTATTTAGCGGCAATTGCTAATTAATTGCCGCTAAAGCTCATTTTTAATGTAGTGTCTCCCACTTTGATCCCGTAGTCATTGACCCTTCATCAAATGAATAAGAAGCTTCACAACATGGATCTTCATGATGATCTACCATCTTGCAGTACCCCTCATTATACTTTAAGACTTAACAACCGACAGGGCTTGTGGACTTAAGCTGATATTATTGTTCTGAACTTCTTTTTGTTTAATTTCTTATTCACATATTTCATTGGATCTCTCGAAGTTCTGTACAAATTAGTGATGGTTATTTTTTGCTTTTCAACAGATACTACTCTACGGATCATTTGATTGATACCCTTCTTCTTTCCCCTGTCCATTTCTTAAGATTTTGATACAGGCTGACTTATCGTTCTATCATTGTGACTAACTACAGCTATACGTGGGGATTGGGGAGCGTGGGACAACTTGGCCATTGTTCACTTCAGTCAGGTGACAAGGAACTTTTACCTAGGCGTGTAGTTTCCCTTGATGGCATATGTATTAAAGAAGTTGCC-TGTGGTGGTGTTCACACCTGTGCTGTGACTGCGAAAGGGGCTCTTTATGCTTG-GGGTGGAGGTCAGGCTGGGCAA-TTGGGAGTTGGGCCATTAAATGGATTCTTTTCATGCAAGCTCAATGAATCTGAGATGATGCTCCGAAATATACCAGTGTTGGTTGTT</genome_strand>
        <mrna_strand>TGAATTTGTTATTAGTGTTTCATGTGGAGCACATTGTACTGTTGCCATTGCAGAACCACGTGAAAACGATGGTAGCATGTCAGCTCGGAGACTTTGGGTTTGGGGACAGAACCAG.....................................................................................GGATCCAATTACCCACGACTCTTTTGGGGTGCCTTTTCTCCTTCTACG.....................................................................................................................................................................................................................................................................................GTTATTCGCCAAGTTTCTTGTGGTGCTGTTCATGTTGTAGCTCTATCAGAAGAAGGGTTACTACAAGCTTGGG........................................................................................................................................................................................................................GCTATAATGAATATGGTCAGCTTGGCAGAGGTGTTACATCAGAAGGCCTTCAAGGCCCTTGTGTAATTAATGGATATGCTAGATTTCTTGATGAAGCCCCTGAACTTGTGAAGATTACCCAAGTGTCATGCGGGGAGTACCATACTGCAGCTATATCAGAGAAAGGCGAGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATACGTGGGGATTGGGGAGCGTGGGACAACTTGGCCATTGTTCACTTCAGTCAGGTGACAAGGAACTTTTACCTAGGCGTGTAGTTTCCCTTGATGGCATATGTATTAAAGAAGTTGCCTTGTGGTGGTGTTCACACCTGTGCTGTGACTGCGAAAGGGGCTCTTTATGCTTGNNGGTGGANGTCAGGCTGGGCAATTTGGGAGTTGGGCCATTAAATGGATTCTTTTCATGCAAGCTCAATGAATCTGAGATGATGCTCCGAAATATACCAGTGTTGGTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E327219" ref_strand="+" ref_description="SGN-E327219 [cTOC-19-G21]">
      <seq>tgaatttgttattagtgtttcatgtggagcacattgtactgttgccattgcagaaccacgtgaaaacgatggtagcatgtcagctcggagactttgggtttggggacagaaccagggatccaattacccacgactcttttggggtgccttttctccttctacggttattcgccaagtttcttgtggtgctgttcatgttgtagctctatcagaagaagggttactacaagcttggggctataatgaatatggtcagcttggcagaggtgttacatcagaaggccttcaaggcccttgtgtaattaatggatatgctagatttcttgatgaagcccctgaacttgtgaagattacccaagtgtcatgcggggagtaccatactgcagctatatcagagaaaggcgaggtctatacgtggggattggggagcgtgggacaacttggccattgttcacttcagtcaggtgacaaggaacttttacctaggcgtgtagtttcccttgatggcatatgtattaaagaagttgcctgtggtggtgttcacacctgtgctgtgactgcgaaaggggctctttatgcttggggtggaggtcaggctgggcaattgggagttgggccattaaatggattcttttcatgcaagctcaatgaatctgagatgatgctccgaaatatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="+" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="51999" stop="55369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52299" g_stop="52413" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52414" i_stop="52498" i_length="85">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52499" g_stop="52546" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="163" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52547" i_stop="52823" i_length="277">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52824" g_stop="52896" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="236" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52897" i_stop="53112" i_length="216">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53113" g_stop="53284" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="408" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53285" i_stop="54800" i_length="1516">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54801" g_stop="55069" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="677" r_length="269" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="+" ref_id="SGN-E327219" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327219" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52299" e_stop="52413"/>
          <exon e_start="52499" e_stop="52546"/>
          <exon e_start="52824" e_stop="52896"/>
          <exon e_start="53113" e_stop="53284"/>
          <exon e_start="54801" e_stop="55069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATTTGTTATTAGTGTTTCATGTGGAGCACATTGTACTGTTGCCATTGCAGAACCACGTGAAAACGATGGTAGCATGTCAGCTCGGAGACTTTGGGTTTGGGGACAGAACCAGGTCAGTCTCACAAAAAAAAAAACCTTCAAGCAGCTACCTTGTTTATTTGAGATCACAATTTGTTTGCCTGTGTTATTCTATGCAGGGATCCAATTACCCACGACTCTTTTGGGGTGCCTTTTCTCCTTCTACGGTACTATTTTTTCTTGAGAATGAACTTTTGTGGAGATATCTGTGTTTTTCATGCAAATACATTACTTCTGTTCTGTGTGGTCCTAGTGGGGCTTAAGCATTTATCTAGTCGCATTTATGTTATGATAGCAGATTTACCTTTACCTGAGTTCTCTATCTAATCTATGCCCCCAATTTTTTTGTTAAGAAGTTGCTTTCCATACAAAAACAACGGTGACTTAACATTCGCAGTGCGCAACAAATTTTATGATATATGTATGCTCTTTCAATTCATTCAGGTTATTCGCCAAGTTTCTTGTGGTGCTGTTCATGTTGTAGCTCTATCAGAAGAAGGGTTACTACAAGCTTGGGGTAATTTGCACTTTCTTAATTCACCTTTATATACAATTCTATGCTTAACATATCCTCTCAGTAATTTTGATGAAATCAGTGCACATATGTGTATGGATCTCTGTATGTGATTTTAATTTTTATGTGTACATCCTCTATCAGGTTACACAGCCTTAGAGTTAAAAACATATTGTGTCATGTATTAATGAAAATTTTGTCACTGCGCTGGTTAAGCAGGCTATAATGAATATGGTCAGCTTGGCAGAGGTGTTACATCAGAAGGCCTTCAAGGCCCTTGTGTAATTAATGGATATGCTAGATTTCTTGATGAAGCCCCTGAACTTGTGAAGATTACCCAAGTGTCATGCGGGGAGTACCATACTGCAGCTATATCAGAGAAAGGCGAGGTGTAAGTGTTCATTGGACCTTTCTTGATGGAGATAAGTTTTGATGCTAAACATGAGAATATGGTTATCCGCATGGCACAAGTGGACGTGGATTTCAGGGAAAATAAACCATAAAGATACACTACTTAATTTGCAGGATTTGTTTTTTCCATTTGTGGAACTTCTCTAATTTAATTGAAGTTGCCTGGTCCAACTGAAATATTACGTTTGTAAATTTCCTCATGGCTTCTGGATTTGATTATAGGATTTTGTTGGATAGTCATTACTAAGAAGATACCTAGAAACTACCCCATTTAGACATACACACTAGAAAAGGAAGATAGAGTTGTTCAGTTCTCTAGGAAGTTAAATGAATCTTCTGCTATTACTTTTAGTTTCTTTAGTAGAGACTTAGCATGATTGCTGCATTTTTCAGTATTCCTGTCTTAACTTTGTATGAGGGAAACAGTGGTGCATCCTTACTCATTTCTCCTTATGAGGTGGTATCAGTTTTGCTATGCATTAACTAAAATTTTGTTGTCTGAGTTTGTGTTAATTTGTATTCACTTTACTTAATTCTTCTGTTCACATGTTAGCTCTTTTAAATTTTTTGGTTATTTCGATCTTTTTTTTTAATTTGATGACCGTGGTGTCTGGACCAACTTTTGTGCACTTAGACGCATTCCACAGGATACCTGCCACGTCCTACTAGCAACAGAAGGTTAGAACAGATGGGAAGAATCATGATAAGTAGGGATTTTTTTTCATGAAGTTCTTTGAGATAATAAATTTCCTTCCAGAAAAGACCCCTAATAATATTGTACTAACATTTGCTTATGTTATAGCAAAGCTAAGTTCTCTTGTTTGCTAGTTCTTTCTTATGCTGGTACGAATTTCTTACCATAAATTGAACTTTTCTTGTGCTGTGATAAACACATCCATGCTCTCCCGAAAACTCTTAAATCAGAAGCGAATTGTGGCCCTCTCTCTACAATAAAAATAACTTTTAGCGGCAATAAATAGATACATTAATAAAGAGTGCTAAAGTCTTTACCGGCATTAGTTAAGTGTCATTAGATCCAATGTCGCTAAAGCCTTTAGTGACACATACAAAGAGTGCTTATTTAGCGGCAATTGCTAATTAATTGCCGCTAAAGCTCATTTTTAATGTAGTGTCTCCCACTTTGATCCCGTAGTCATTGACCCTTCATCAAATGAATAAGAAGCTTCACAACATGGATCTTCATGATGATCTACCATCTTGCAGTACCCCTCATTATACTTTAAGACTTAACAACCGACAGGGCTTGTGGACTTAAGCTGATATTATTGTTCTGAACTTCTTTTTGTTTAATTTCTTATTCACATATTTCATTGGATCTCTCGAAGTTCTGTACAAATTAGTGATGGTTATTTTTTGCTTTTCAACAGATACTACTCTACGGATCATTTGATTGATACCCTTCTTCTTTCCCCTGTCCATTTCTTAAGATTTTGATACAGGCTGACTTATCGTTCTATCATTGTGACTAACTACAGCTATACGTGGGGATTGGGGAGCGTGGGACAACTTGGCCATTGTTCACTTCAGTCAGGTGACAAGGAACTTTTACCTAGGCGTGTAGTTTCCCTTGATGGCATATGTATTAAAGAAGTTGCCTGTGGTGGTGTTCACACCTGTGCTGTGACTGCGAAAGGGGCTCTTTATGCTTGGGGTGGAGGTCAGGCTGGGCAATTGGGAGTTGGGCCATTAAATGGATTCTTTTCATGCAAGCTCAATGAATCTGAGATGATGCTCCGAAATATAC</genome_strand>
        <mrna_strand>TGAATTTGTTATTAGTGTTTCATGTGGAGCACATTGTACTGTTGCCATTGCAGAACCACGTGAAAACGATGGTAGCATGTCAGCTCGGAGACTTTGGGTTTGGGGACAGAACCAG.....................................................................................GGATCCAATTACCCACGACTCTTTTGGGGTGCCTTTTCTCCTTCTACG.....................................................................................................................................................................................................................................................................................GTTATTCGCCAAGTTTCTTGTGGTGCTGTTCATGTTGTAGCTCTATCAGAAGAAGGGTTACTACAAGCTTGGG........................................................................................................................................................................................................................GCTATAATGAATATGGTCAGCTTGGCAGAGGTGTTACATCAGAAGGCCTTCAAGGCCCTTGTGTAATTAATGGATATGCTAGATTTCTTGATGAAGCCCCTGAACTTGTGAAGATTACCCAAGTGTCATGCGGGGAGTACCATACTGCAGCTATATCAGAGAAAGGCGAGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATACGTGGGGATTGGGGAGCGTGGGACAACTTGGCCATTGTTCACTTCAGTCAGGTGACAAGGAACTTTTACCTAGGCGTGTAGTTTCCCTTGATGGCATATGTATTAAAGAAGTTGCCTGTGGTGGTGTTCACACCTGTGCTGTGACTGCGAAAGGGGCTCTTTATGCTTGGGGTGGAGGTCAGGCTGGGCAATTGGGAGTTGGGCCATTAAATGGATTCTTTTCATGCAAGCTCAATGAATCTGAGATGATGCTCCGAAATATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E548928" ref_strand="+" ref_description="SGN-E548928 [TUS-65-L12](-)">
      <seq>caaggaacttttacctaggcgtgtagtttcccttgatggcatatgtattaaagaagttgcctgtggtggtgttcacacctgtgctgtgactgcgaaaggggctctttatgcttggggtggaggtcaggctgggcaattgggagttgggccattaaatggattcttttcatgcaagctcaatgaatctgagatgatgctccgaaatataccagtgttggttgttccagatggtgtgcaactcgttgcatgtggtcattcacacacacttacttctgctaaagacggacgaatacatggatggggttataactgctatggtcaagcggctaatgagaagtctacatatgcctggtgtccatcaccagttgattggtgtgttggggcagtccgaaaattggctgctggtggtggacattcagcagtgctgactgatgcatgctctctaaaagagctgtgtgaatttaggcttgcagaaacagtgaatccatccaatgcttcagtggttgaggatgtcgcctcaagaacaggagctgatgctttagcacgactttgtgaaagattgagggagcattactacaatgatgatgagtttggtctgtgaaatcattgatgggtgttaaatatgtaacataccaataattcagccattagatttgattcttcaatccatctaatacaatagagaaaacagagtctttgtttcatcattgaataaatgtattctactttttatgctgctgcatcattaagttaatacaacaaaacatctacttacaatttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="+" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="54561" stop="56150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54861" g_stop="55232" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55233" i_stop="55318" i_length="86">
            <donor d_prob="0.253" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55319" g_stop="55510" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="564" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55511" i_stop="55625" i_length="115">
            <donor d_prob="0.256" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55626" g_stop="55851" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="790" r_length="226" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="+" ref_id="SGN-E548928" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548928" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54861" e_stop="55232"/>
          <exon e_start="55319" e_stop="55510"/>
          <exon e_start="55626" e_stop="55851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGAACTTTTACCTAGGCGTGTAGTTTCCCTTGATGGCATATGTATTAAAGAAGTTGCCTGTGGTGGTGTTCACACCTGTGCTGTGACTGCGAAAGGGGCTCTTTATGCTTGGGGTGGAGGTCAGGCTGGGCAATTGGGAGTTGGGCCATTAAATGGATTCTTTTCATGCAAGCTCAATGAATCTGAGATGATGCTCCGAAATATACCAGTGTTGGTTGTTCCAGATGGTGTGCAACTCGTTGCATGTGGTCATTCACACACACTTACTTCTGCTAAAGACGGACGAATACATGGATGGGGTTATAACTGCTATGGTCAAGCGGCTAATGAGAAGTCTACATATGCCTGGTGTCCATCACCAGTTGATTGGTACGATTCGTGAGAACCAATGCTTGACTAGACGTTGGAAATCTTTTGATACAAAGTCATTTCTTATTCAAGTACCCTTTGTTCAGGTGTGTTGGGGCAGTCCGAAAATTGGCTGCTGGTGGTGGACATTCAGCAGTGCTGACTGATGCATGCTCTCTAAAAGAGCTGTGTGAATTTAGGCTTGCAGAAACAGTGAATCCATCCAATGCTTCAGTGGTTGAGGATGTCGCCTCAAGAACAGGAGCTGATGCTTTAGCACGACTTTGTGAAAGATTGAGGTAGAAATTCTACTGTTGAATGCCATGCTTCAGATGTTCAAAACCTGTCTTGCTCTAAAATGTCATTGCTCTAAAAGCGCTAGTAACTAAATTTATTTTTGTTGGGCATTTGCAGGGAGCATTACTACAATGATGATGAGTTTGGTCTGTGAAATCATTGATGGGTGTTAAATATGTAACATACCAATAATTCAGCCATTAGATTTGATTCTTCAATCCATCTAATACAATAGAGAAAACAGAGTCTTTGTTTCATCATTGAATAAATGTATTCTACTTTTTATGCTGCTGCATCATTAAGTTAATACAACAAAACATCTACTTACAATTTAACCATTAAT</genome_strand>
        <mrna_strand>CAAGGAACTTTTACCTAGGCGTGTAGTTTCCCTTGATGGCATATGTATTAAAGAAGTTGCCTGTGGTGGTGTTCACACCTGTGCTGTGACTGCGAAAGGGGCTCTTTATGCTTGGGGTGGAGGTCAGGCTGGGCAATTGGGAGTTGGGCCATTAAATGGATTCTTTTCATGCAAGCTCAATGAATCTGAGATGATGCTCCGAAATATACCAGTGTTGGTTGTTCCAGATGGTGTGCAACTCGTTGCATGTGGTCATTCACACACACTTACTTCTGCTAAAGACGGACGAATACATGGATGGGGTTATAACTGCTATGGTCAAGCGGCTAATGAGAAGTCTACATATGCCTGGTGTCCATCACCAGTTGATTG......................................................................................GTGTGTTGGGGCAGTCCGAAAATTGGCTGCTGGTGGTGGACATTCAGCAGTGCTGACTGATGCATGCTCTCTAAAAGAGCTGTGTGAATTTAGGCTTGCAGAAACAGTGAATCCATCCAATGCTTCAGTGGTTGAGGATGTCGCCTCAAGAACAGGAGCTGATGCTTTAGCACGACTTTGTGAAAGATTGAG...................................................................................................................GGAGCATTACTACAATGATGATGAGTTTGGTCTGTGAAATCATTGATGGGTGTTAAATATGTAACATACCAATAATTCAGCCATTAGATTTGATTCTTCAATCCATCTAATACAATAGAGAAAACAGAGTCTTTGTTTCATCATTGAATAAATGTATTCTACTTTTTATGCTGCTGCATCATTAAGTTAATACAACAAAACATCTACTTACAATTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E547434" ref_strand="+" ref_description="SGN-E547434 [TUS-71-F1](-)">
      <seq>ccattaaatggattcttttcttgcaagctcaatgaatctgagatgatgctccgaaatattccagtgttggttgttccagatggtgtgcaactcgttgcatgtgggcattcacacacacttatttctgctaaagacggacgaatacatggatggggttataactgctacggtcaagcggctaatgagaagtctacatatgcctggtatccatcaccagttgattggtgtgttggggcagtccgaaaattggctgctggtggtggacattcagcagtgctgactgatgcatgctctctaaaagagttgtgtgaatttaggcttgcagaaacagtgaatccatccaacgcttcagtggttgaggatgtcgcctcaagaacaggagctgatgctttagcacgactttgtgaaagattgagggagcattactacaatgatgatgagtttggtctgtgaaatcattgatgggtgttaaatatgtaatataccaaataattcagccattagatttgattcttcaatccatctaatacaatagagaaaacagagtctttgtttcatcattgaataaatgtattctactttttatgcagcaggagtgctgctgcatcattaagttaatacaaaacatctacttacaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="+" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="54709" stop="56138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55009" g_stop="55232" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="224" r_length="224" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55233" i_stop="55318" i_length="86">
            <donor d_prob="0.253" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55319" g_stop="55510" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="416" r_length="192" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55511" i_stop="55625" i_length="115">
            <donor d_prob="0.256" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55626" g_stop="55794" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="586" r_length="170" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="635" polyA_stop="648"/>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="+" ref_id="SGN-E547434" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.903" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55009" e_stop="55232"/>
          <exon e_start="55319" e_stop="55510"/>
          <exon e_start="55626" e_stop="55794"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTAAATGGATTCTTTTCATGCAAGCTCAATGAATCTGAGATGATGCTCCGAAATATACCAGTGTTGGTTGTTCCAGATGGTGTGCAACTCGTTGCATGTGGTCATTCACACACACTTACTTCTGCTAAAGACGGACGAATACATGGATGGGGTTATAACTGCTATGGTCAAGCGGCTAATGAGAAGTCTACATATGCCTGGTGTCCATCACCAGTTGATTGGTACGATTCGTGAGAACCAATGCTTGACTAGACGTTGGAAATCTTTTGATACAAAGTCATTTCTTATTCAAGTACCCTTTGTTCAGGTGTGTTGGGGCAGTCCGAAAATTGGCTGCTGGTGGTGGACATTCAGCAGTGCTGACTGATGCATGCTCTCTAAAAGAGCTGTGTGAATTTAGGCTTGCAGAAACAGTGAATCCATCCAATGCTTCAGTGGTTGAGGATGTCGCCTCAAGAACAGGAGCTGATGCTTTAGCACGACTTTGTGAAAGATTGAGGTAGAAATTCTACTGTTGAATGCCATGCTTCAGATGTTCAAAACCTGTCTTGCTCTAAAATGTCATTGCTCTAAAAGCGCTAGTAACTAAATTTATTTTTGTTGGGCATTTGCAGGGAGCATTACTACAATGATGATGAGTTTGGTCTGTGAAATCATTGATGGGTGTTAAATATGTAACATACC-AATAATTCAGCCATTAGATTTGATTCTTCAATCCATCTAATACAATAGAGAAAACAGAGTCTTTGTTTCATCATTGAATAAATGTATTCTACTTTTTAT</genome_strand>
        <mrna_strand>CCATTAAATGGATTCTTTTCTTGCAAGCTCAATGAATCTGAGATGATGCTCCGAAATATTCCAGTGTTGGTTGTTCCAGATGGTGTGCAACTCGTTGCATGTGGGCATTCACACACACTTATTTCTGCTAAAGACGGACGAATACATGGATGGGGTTATAACTGCTACGGTCAAGCGGCTAATGAGAAGTCTACATATGCCTGGTATCCATCACCAGTTGATTG......................................................................................GTGTGTTGGGGCAGTCCGAAAATTGGCTGCTGGTGGTGGACATTCAGCAGTGCTGACTGATGCATGCTCTCTAAAAGAGTTGTGTGAATTTAGGCTTGCAGAAACAGTGAATCCATCCAACGCTTCAGTGGTTGAGGATGTCGCCTCAAGAACAGGAGCTGATGCTTTAGCACGACTTTGTGAAAGATTGAG...................................................................................................................GGAGCATTACTACAATGATGATGAGTTTGGTCTGTGAAATCATTGATGGGTGTTAAATATGTAATATACCAAATAATTCAGCCATTAGATTTGATTCTTCAATCCATCTAATACAATAGAGAAAACAGAGTCTTTGTTTCATCATTGAATAAATGTATTCTACTTTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E539819" ref_strand="+" ref_description="SGN-E539819 [TUS-59-M10]">
      <seq>caactcgttgcatgtggtcattcacacacacttacttctgctaaagacggacgaatacatggatggggttataactgctatggtcaagcggctaatgagaagtctacatatgcctggtgtccatcaccagttgattggtgtgttggggcagtccgaaaattggctgctggtggtggacattcagcagtgctgactgatgcatgctctctaaaagagctgtgtgaatttaggcttgcagaaacagtgaatccatccaatgcttcagtggttgaggatgtcgcctcaagaacaggagctgatgctttagcacgactttgtgaaagattgagggagcattactacaatgatgatgagtttggtctgtgaaatcattgatgggtgttaaatatgtaacataccaataattcagccattagatttgattcttcaatccatctaatacaatagagaaaacagagtctttgtttcatcattgaataaatgtattctactttttatgctgctgcatcattaagttaatacaacaaaacatctacttacaatttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="+" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="54796" stop="56150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55096" g_stop="55232" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55233" i_stop="55318" i_length="86">
            <donor d_prob="0.253" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55319" g_stop="55510" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="329" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55511" i_stop="55625" i_length="115">
            <donor d_prob="0.256" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55626" g_stop="55852" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="556" r_length="227" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="+" ref_id="SGN-E539819" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539819" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55096" e_stop="55232"/>
          <exon e_start="55319" e_stop="55510"/>
          <exon e_start="55626" e_stop="55852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTCGTTGCATGTGGTCATTCACACACACTTACTTCTGCTAAAGACGGACGAATACATGGATGGGGTTATAACTGCTATGGTCAAGCGGCTAATGAGAAGTCTACATATGCCTGGTGTCCATCACCAGTTGATTGGTACGATTCGTGAGAACCAATGCTTGACTAGACGTTGGAAATCTTTTGATACAAAGTCATTTCTTATTCAAGTACCCTTTGTTCAGGTGTGTTGGGGCAGTCCGAAAATTGGCTGCTGGTGGTGGACATTCAGCAGTGCTGACTGATGCATGCTCTCTAAAAGAGCTGTGTGAATTTAGGCTTGCAGAAACAGTGAATCCATCCAATGCTTCAGTGGTTGAGGATGTCGCCTCAAGAACAGGAGCTGATGCTTTAGCACGACTTTGTGAAAGATTGAGGTAGAAATTCTACTGTTGAATGCCATGCTTCAGATGTTCAAAACCTGTCTTGCTCTAAAATGTCATTGCTCTAAAAGCGCTAGTAACTAAATTTATTTTTGTTGGGCATTTGCAGGGAGCATTACTACAATGATGATGAGTTTGGTCTGTGAAATCATTGATGGGTGTTAAATATGTAACATACCAATAATTCAGCCATTAGATTTGATTCTTCAATCCATCTAATACAATAGAGAAAACAGAGTCTTTGTTTCATCATTGAATAAATGTATTCTACTTTTTATGCTGCTGCATCATTAAGTTAATACAACAAAACATCTACTTACAATTTAACCATTAATT</genome_strand>
        <mrna_strand>CAACTCGTTGCATGTGGTCATTCACACACACTTACTTCTGCTAAAGACGGACGAATACATGGATGGGGTTATAACTGCTATGGTCAAGCGGCTAATGAGAAGTCTACATATGCCTGGTGTCCATCACCAGTTGATTG......................................................................................GTGTGTTGGGGCAGTCCGAAAATTGGCTGCTGGTGGTGGACATTCAGCAGTGCTGACTGATGCATGCTCTCTAAAAGAGCTGTGTGAATTTAGGCTTGCAGAAACAGTGAATCCATCCAATGCTTCAGTGGTTGAGGATGTCGCCTCAAGAACAGGAGCTGATGCTTTAGCACGACTTTGTGAAAGATTGAG...................................................................................................................GGAGCATTACTACAATGATGATGAGTTTGGTCTGTGAAATCATTGATGGGTGTTAAATATGTAACATACCAATAATTCAGCCATTAGATTTGATTCTTCAATCCATCTAATACAATAGAGAAAACAGAGTCTTTGTTTCATCATTGAATAAATGTATTCTACTTTTTATGCTGCTGCATCATTAAGTTAATACAACAAAACATCTACTTACAATTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E539817" ref_strand="+" ref_description="SGN-E539817 [TUS-59-M10](-)">
      <seq>caactcgttgcatgtggtcattcacacacacttacttctgctaaagacggacgaatacatggatggggttataactgctatggtcaagcggctaatgagaagtctacatatgcctggtgtccatcaccagttgattggtgtgttggggcagtccgaaaattggctgctggtggtggacattcagcagtgctgactgatgcatgctctctaaaagagctgtgtgaatttaggcttgcagaaacagtgaatccatccaatgcttcagtggttgaggatgtcgcctcaagaacaggagctgatgctttagcacgactttgtgaaagattgagggagcattactacaatgatgatgagtttggtctgtgaaatcattgatgggtgttaaatatgtaacataccaataattcagccattagatttgattcttcaatccatctaatacaatagagaaaacagagtctttgtttcatcattgaataaatgtattctactttttatgctgctgcatcattaagttaatacaacaaaacatctacttacaattcaaattagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="+" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="54796" stop="56143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55096" g_stop="55232" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55233" i_stop="55318" i_length="86">
            <donor d_prob="0.253" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55319" g_stop="55510" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="329" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55511" i_stop="55625" i_length="115">
            <donor d_prob="0.256" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55626" g_stop="55851" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="555" r_length="226" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="+" ref_id="SGN-E539817" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55096" e_stop="55232"/>
          <exon e_start="55319" e_stop="55510"/>
          <exon e_start="55626" e_stop="55851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTCGTTGCATGTGGTCATTCACACACACTTACTTCTGCTAAAGACGGACGAATACATGGATGGGGTTATAACTGCTATGGTCAAGCGGCTAATGAGAAGTCTACATATGCCTGGTGTCCATCACCAGTTGATTGGTACGATTCGTGAGAACCAATGCTTGACTAGACGTTGGAAATCTTTTGATACAAAGTCATTTCTTATTCAAGTACCCTTTGTTCAGGTGTGTTGGGGCAGTCCGAAAATTGGCTGCTGGTGGTGGACATTCAGCAGTGCTGACTGATGCATGCTCTCTAAAAGAGCTGTGTGAATTTAGGCTTGCAGAAACAGTGAATCCATCCAATGCTTCAGTGGTTGAGGATGTCGCCTCAAGAACAGGAGCTGATGCTTTAGCACGACTTTGTGAAAGATTGAGGTAGAAATTCTACTGTTGAATGCCATGCTTCAGATGTTCAAAACCTGTCTTGCTCTAAAATGTCATTGCTCTAAAAGCGCTAGTAACTAAATTTATTTTTGTTGGGCATTTGCAGGGAGCATTACTACAATGATGATGAGTTTGGTCTGTGAAATCATTGATGGGTGTTAAATATGTAACATACCAATAATTCAGCCATTAGATTTGATTCTTCAATCCATCTAATACAATAGAGAAAACAGAGTCTTTGTTTCATCATTGAATAAATGTATTCTACTTTTTATGCTGCTGCATCATTAAGTTAATACAACAAAACATCTACTTACAATTTAACCATTAAT</genome_strand>
        <mrna_strand>CAACTCGTTGCATGTGGTCATTCACACACACTTACTTCTGCTAAAGACGGACGAATACATGGATGGGGTTATAACTGCTATGGTCAAGCGGCTAATGAGAAGTCTACATATGCCTGGTGTCCATCACCAGTTGATTG......................................................................................GTGTGTTGGGGCAGTCCGAAAATTGGCTGCTGGTGGTGGACATTCAGCAGTGCTGACTGATGCATGCTCTCTAAAAGAGCTGTGTGAATTTAGGCTTGCAGAAACAGTGAATCCATCCAATGCTTCAGTGGTTGAGGATGTCGCCTCAAGAACAGGAGCTGATGCTTTAGCACGACTTTGTGAAAGATTGAG...................................................................................................................GGAGCATTACTACAATGATGATGAGTTTGGTCTGTGAAATCATTGATGGGTGTTAAATATGTAACATACCAATAATTCAGCCATTAGATTTGATTCTTCAATCCATCTAATACAATAGAGAAAACAGAGTCTTTGTTTCATCATTGAATAAATGTATTCTACTTTTTATGCTGCTGCATCATTAAGTTAATACAACAAAACATCTACTTACAATTCAAATTAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E539810" ref_strand="+" ref_description="SGN-E539810 [TUS-59-M6](-)">
      <seq>caactcgttgcatgtggtcattcacacacacttacttctgctaaagacggacgaatacatggatggggttataactgctatggtcaagcggctaatgagaagtctacatatgcctggtgtccatcaccagttgattggtgtgttggggcagtccgaaaattggctgctggtggtggacattcagcagtgctgactgatgcatgctctctaaaagagctgtgtgaatttaggcttgcagaaacagtgaatccatccaatgcttcagtggttgaggatgtcgcctcaagaacaggagctgatgctttagcacgactttgtgaaagattgagggagcattactacaatgatgatgagtttggtctgtgaaatcattgatgggtgttaaatatgtaacataccaataattcagccattagatttgattcttcaatccatctaatacaatagagaaaacagagtctttgtttcatcattgaataaatgtattctactttttatgctgctgcatcattaagttaatacaacaaaacatctacttacaattaaaaaaaaaaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="+" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="54796" stop="56150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55096" g_stop="55232" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55233" i_stop="55318" i_length="86">
            <donor d_prob="0.253" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55319" g_stop="55510" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="329" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55511" i_stop="55625" i_length="115">
            <donor d_prob="0.256" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55626" g_stop="55837" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="541" r_length="212" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="545" polyA_stop="564"/>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="+" ref_id="SGN-E539810" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539810" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55096" e_stop="55232"/>
          <exon e_start="55319" e_stop="55510"/>
          <exon e_start="55626" e_stop="55837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTCGTTGCATGTGGTCATTCACACACACTTACTTCTGCTAAAGACGGACGAATACATGGATGGGGTTATAACTGCTATGGTCAAGCGGCTAATGAGAAGTCTACATATGCCTGGTGTCCATCACCAGTTGATTGGTACGATTCGTGAGAACCAATGCTTGACTAGACGTTGGAAATCTTTTGATACAAAGTCATTTCTTATTCAAGTACCCTTTGTTCAGGTGTGTTGGGGCAGTCCGAAAATTGGCTGCTGGTGGTGGACATTCAGCAGTGCTGACTGATGCATGCTCTCTAAAAGAGCTGTGTGAATTTAGGCTTGCAGAAACAGTGAATCCATCCAATGCTTCAGTGGTTGAGGATGTCGCCTCAAGAACAGGAGCTGATGCTTTAGCACGACTTTGTGAAAGATTGAGGTAGAAATTCTACTGTTGAATGCCATGCTTCAGATGTTCAAAACCTGTCTTGCTCTAAAATGTCATTGCTCTAAAAGCGCTAGTAACTAAATTTATTTTTGTTGGGCATTTGCAGGGAGCATTACTACAATGATGATGAGTTTGGTCTGTGAAATCATTGATGGGTGTTAAATATGTAACATACCAATAATTCAGCCATTAGATTTGATTCTTCAATCCATCTAATACAATAGAGAAAACAGAGTCTTTGTTTCATCATTGAATAAATGTATTCTACTTTTTATGCTGCTGCATCATTAAGTTAATACAACAAAACATCTACTTACA</genome_strand>
        <mrna_strand>CAACTCGTTGCATGTGGTCATTCACACACACTTACTTCTGCTAAAGACGGACGAATACATGGATGGGGTTATAACTGCTATGGTCAAGCGGCTAATGAGAAGTCTACATATGCCTGGTGTCCATCACCAGTTGATTG......................................................................................GTGTGTTGGGGCAGTCCGAAAATTGGCTGCTGGTGGTGGACATTCAGCAGTGCTGACTGATGCATGCTCTCTAAAAGAGCTGTGTGAATTTAGGCTTGCAGAAACAGTGAATCCATCCAATGCTTCAGTGGTTGAGGATGTCGCCTCAAGAACAGGAGCTGATGCTTTAGCACGACTTTGTGAAAGATTGAG...................................................................................................................GGAGCATTACTACAATGATGATGAGTTTGGTCTGTGAAATCATTGATGGGTGTTAAATATGTAACATACCAATAATTCAGCCATTAGATTTGATTCTTCAATCCATCTAATACAATAGAGAAAACAGAGTCTTTGTTTCATCATTGAATAAATGTATTCTACTTTTTATGCTGCTGCATCATTAAGTTAATACAACAAAACATCTACTTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284801" ref_strand="+" ref_description="SGN-E284801 [cLES-3-N2]">
      <seq>aactcgttgcatgtggtcattcacacacacttacttctgctaaagacggacgaatacatggatggggttataactgctatggtcaagcggctaatgagaagtctacatatgcctggtgtccatcaccagttgattggtgtgttggggcagtccgaaaattggctgctggcggtggacattcagcagtgctgactgatgcatgctctctaaaagagctgtgtgaatttaggcttgcagaaacagtgaatccatccaatgcttcagtggttgaggatgtcgcctcaagaacaggagctgatgctttagcacgactttgtgaaagattgacggagcattactacaatgatgatgagtttggtctgagaaatcattgatgggcgttaaatatgtaacataccaataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="+" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="54797" stop="56000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55097" g_stop="55232" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55233" i_stop="55318" i_length="86">
            <donor d_prob="0.253" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55319" g_stop="55510" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="328" r_length="192" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55511" i_stop="55625" i_length="115">
            <donor d_prob="0.256" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55626" g_stop="55700" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="403" r_length="75" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="+" ref_id="SGN-E284801" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284801" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55097" e_stop="55232"/>
          <exon e_start="55319" e_stop="55510"/>
          <exon e_start="55626" e_stop="55700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCGTTGCATGTGGTCATTCACACACACTTACTTCTGCTAAAGACGGACGAATACATGGATGGGGTTATAACTGCTATGGTCAAGCGGCTAATGAGAAGTCTACATATGCCTGGTGTCCATCACCAGTTGATTGGTACGATTCGTGAGAACCAATGCTTGACTAGACGTTGGAAATCTTTTGATACAAAGTCATTTCTTATTCAAGTACCCTTTGTTCAGGTGTGTTGGGGCAGTCCGAAAATTGGCTGCTGGTGGTGGACATTCAGCAGTGCTGACTGATGCATGCTCTCTAAAAGAGCTGTGTGAATTTAGGCTTGCAGAAACAGTGAATCCATCCAATGCTTCAGTGGTTGAGGATGTCGCCTCAAGAACAGGAGCTGATGCTTTAGCACGACTTTGTGAAAGATTGAGGTAGAAATTCTACTGTTGAATGCCATGCTTCAGATGTTCAAAACCTGTCTTGCTCTAAAATGTCATTGCTCTAAAAGCGCTAGTAACTAAATTTATTTTTGTTGGGCATTTGCAGGGAGCATTACTACAATGATGATGAGTTTGGTCTGTGAAATCATTGATGGGTGTTAAATATGTAACATACCAATAA</genome_strand>
        <mrna_strand>AACTCGTTGCATGTGGTCATTCACACACACTTACTTCTGCTAAAGACGGACGAATACATGGATGGGGTTATAACTGCTATGGTCAAGCGGCTAATGAGAAGTCTACATATGCCTGGTGTCCATCACCAGTTGATTG......................................................................................GTGTGTTGGGGCAGTCCGAAAATTGGCTGCTGGCGGTGGACATTCAGCAGTGCTGACTGATGCATGCTCTCTAAAAGAGCTGTGTGAATTTAGGCTTGCAGAAACAGTGAATCCATCCAATGCTTCAGTGGTTGAGGATGTCGCCTCAAGAACAGGAGCTGATGCTTTAGCACGACTTTGTGAAAGATTGAC...................................................................................................................GGAGCATTACTACAATGATGATGAGTTTGGTCTGAGAAATCATTGATGGGCGTTAAATATGTAACATACCAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284803" ref_strand="-" ref_description="SGN-E284803 [cLES-3-N20]">
      <seq>tgcatgctctctaaaagagctgtgtgaatttaggcttgcagaaacagtgaatccatccaatgcttcagtggttgaggatgtcgcctcaagaacaggagctgatgttttagcacgactttgtgaaagattgagggagcattactacaatgatgatgagtttggtctgtgaaatcattgatgggtgttaaatatgtaacataccaataattcagccattagatttgattcttcaatccatctaatacaatagagaaaacagagtctttgtttcatcattgaataaatgtattctactttttatgctgctgcatcattaagttaatacaacaaaacatctacttacaatttaaaaaaaaaaaaaaaaaaatcgagacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="+" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="55079" stop="56150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55379" g_stop="55510" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55511" i_stop="55625" i_length="115">
            <donor d_prob="0.256" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55626" g_stop="55843" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="350" r_length="218" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="351" polyA_stop="368"/>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="+" ref_id="SGN-E284803" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>350</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284803" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="55379" e_stop="55510"/>
          <exon e_start="55626" e_stop="55843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATGCTCTCTAAAAGAGCTGTGTGAATTTAGGCTTGCAGAAACAGTGAATCCATCCAATGCTTCAGTGGTTGAGGATGTCGCCTCAAGAACAGGAGCTGATGCTTTAGCACGACTTTGTGAAAGATTGAGGTAGAAATTCTACTGTTGAATGCCATGCTTCAGATGTTCAAAACCTGTCTTGCTCTAAAATGTCATTGCTCTAAAAGCGCTAGTAACTAAATTTATTTTTGTTGGGCATTTGCAGGGAGCATTACTACAATGATGATGAGTTTGGTCTGTGAAATCATTGATGGGTGTTAAATATGTAACATACCAATAATTCAGCCATTAGATTTGATTCTTCAATCCATCTAATACAATAGAGAAAACAGAGTCTTTGTTTCATCATTGAATAAATGTATTCTACTTTTTATGCTGCTGCATCATTAAGTTAATACAACAAAACATCTACTTACAATTTAA</genome_strand>
        <mrna_strand>TGCATGCTCTCTAAAAGAGCTGTGTGAATTTAGGCTTGCAGAAACAGTGAATCCATCCAATGCTTCAGTGGTTGAGGATGTCGCCTCAAGAACAGGAGCTGATGTTTTAGCACGACTTTGTGAAAGATTGAG...................................................................................................................GGAGCATTACTACAATGATGATGAGTTTGGTCTGTGAAATCATTGATGGGTGTTAAATATGTAACATACCAATAATTCAGCCATTAGATTTGATTCTTCAATCCATCTAATACAATAGAGAAAACAGAGTCTTTGTTTCATCATTGAATAAATGTATTCTACTTTTTATGCTGCTGCATCATTAAGTTAATACAACAAAACATCTACTTACAATTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E747421" ref_strand="+" ref_description="SGN-E747421 [GI|47104541]">
      <seq>tctctatctatgctaggtagcttatatgatttaatagttcgattaatttaaatacgcattaaagatagaggatgggaagaggtagggtagagttgaaacggatcgagaacaaaataagcagacaagtaacattctcaaagagacgatctggattattgaagaaagctaatgagatctcagtattatgtgatgctgatgttgcattgattgtgttttctaccaaaggcaaacttttcgagtattcctcaaatgactcaagtatggaaagtattcttgaaagatatgaaagatgctcatatgcagagagacagatgaatgctaatgattctgatcccaaggaaaattggagtgtggagtatccgaagctcatgtcaagaattgaacttttacaaagaaatataaggcattacatgggtcaggatctggaccctctcagtttgcgtgagctccagagtatagagcaacagattgatacttcattaaagagaattagaagcaggaagaatcaactgatgcacgagtccatttctgagctgcagaaaaaggagaaagcgctccaagaacaaaacaacttgattactaagaagctaaaagaaaatgagaagacacaacccaactcatcaggccaaaactcagcaacagttcatgtgtttccatcacattctcaccaccaacttcctaaccttacaattgggggggcttttggaggaatgaacagagatggatcgggtcaggctcatcactatccgggttcaaataacaataataataattcctcattgataccgccatggatgctccgccacgtcagcaacgaaggatgaaataatattccggagagtataattaattaattgtatatgttttgttccaaacaatattaatcaactttcctgtttgtgatgtataattagcttaagctaataaaacttttcatccttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="61026" stop="55616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60726" g_stop="60468" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="259" r_length="259" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60467" i_stop="57908" i_length="2560">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57907" g_stop="57829" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="338" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57828" i_stop="57090" i_length="739">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57089" g_stop="57025" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="403" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57024" i_stop="56862" i_length="163">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56861" g_stop="56762" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="503" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56761" i_stop="56683" i_length="79">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56682" g_stop="56641" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="545" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="56640" i_stop="56513" i_length="128">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="56512" g_stop="56471" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="587" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="56470" i_stop="56385" i_length="86">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="56384" g_stop="56278" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="694" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="56277" i_stop="56163" i_length="115">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="56162" g_stop="55916" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="695" r_stop="941" r_length="247" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="942" polyA_stop="956"/>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E747421" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>941</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747421" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60726" e_stop="60468"/>
          <exon e_start="57907" e_stop="57829"/>
          <exon e_start="57089" e_stop="57025"/>
          <exon e_start="56861" e_stop="56762"/>
          <exon e_start="56682" e_stop="56641"/>
          <exon e_start="56512" e_stop="56471"/>
          <exon e_start="56384" e_stop="56278"/>
          <exon e_start="56162" e_stop="55916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTATCTATGCTAGGTAGCTTATATGATTTAATAGTTCGATTAATTTAAATACGCATTAAAGATAGAGGATGGGAAGAGGTAGGGTAGAGTTGAAACGGATCGAGAACAAAATAAGCAGACAAGTAACATTCTCAAAGAGACGATCTGGATTATTGAAGAAAGCTAATGAGATCTCAGTATTATGTGATGCTGATGTTGCATTGATTGTGTTTTCTACCAAAGGCAAACTTTTCGAGTATTCCTCAAATGACTCAAGGTACTACTCTACCAATTTTATTCGAAATCTATGACTAAACGCTGCTATAGTTTTTTTCTATTGAAGCAACAAAATGATGTTTTACCTTTAAAAATTCCTAATTAGTGTATATATATATATATATATATATGTCATGTTAGTGTTTTGGTTTTTTATTTTTGACATAATTAGGTCACAAAAGTAATGAAGGAAAATTAAATCATATATGCTATGTATATTTAGTAAGCTAATTATTGATCAGCTCATTGATGTCCTCATGCACTAATTTGAGTAATTTCTATAATTGTTTGTATGGTAACTTATTACTTTATCTTTTCTCATTACATACGATTTAGATCGTTTGTTCTTAGCTTGGTGAATTTATTACATTGAAACTAGATCTCCTATTTCTTTCCAAAGAGTAAATCAAGTGATTATTGATCAGTAATCATGAACACATATTTCATACTTCTTAGCTCCCGTTTTGCCTTAGATTTTGAAACTTGAAAATTTGAGTTTTTTTTTTTTGAAAGTGTGCATTTCGGAACAAAAATTGTGTTAGAATTTTTACTTGGAAAATTTTTGAAGTTTTGTGAGCGAAAGTAAAAGTCATTCAACCTACTAAATAGTTTTGGAAATTTATCTAAAATTTATGACCAAAAGCTAACTTCATCATTGAAGCATTGAAATTTATTTATATTTGCTACACGAAATAAAAATGATATTTTACCCTTCAAATATCCCTAAAACTACCCTCATAAGTATATTACTTCCCTTGTGTTTTCCATGTATATTTTGCAGGTAGTCATGTTAGTGTATATTGACATAATTACATTACAATTAGATGAAATGCACAAAATACAACAAATTAAAAGCAAAAGCTGAAGAAAGAGCATTTCATTTTAAAGCCTAGAGCCTTGTGCCTCTTTGTCAGTTCATTCACTGATATATAGTACGAGGAGCACTCTTAATGACGTACATGTACTCCAATTATATTACTAACATTAATGATAACGCAGAGATTCTTTATACTGTCAACGTATAAATTATCTTCTGGTCAATTGATCTCTATTAATGACAAGTTAAATCTTATTAGTCGTTTGGTTTTCCGAACGAATTAATATTGATCCAAATCCTTCAGTTAGTTGTTTATAGTCTATGATTTCATGTTATATTAAAATTGATAAATAATCTTCTTGAAGTTTGTAATAGCAATGAATACATAACGAGTTATGTAAATCATGAGTTTAAAAGACCTACTAACTAGATTTGTTGAGGCCTCTAATATAGTTTTAACTTATTAAAGGCATATCTTATACAACATTGATAAATCTAAATGATTATGATGAATCTTGTAGAACAGACACAATTTTGTGGCAAAATATTGTCAAACAATCTCATCCAGCTACAAAAAAGAAAAGGCACAATCTAGGTATAGCTTTACCTGTTATAGTAAATTGTAAGCAACTTTTTATTTGATCATGAATGGAAGCTTTAATTAACAACCAAAACATAGCTAATGTAATTCTACAGGTGGAGTCTAAAGAGAATAGAGCTAATGTCATTACCTCAAAAATGATCACTAGTGACAATTAATTCTTAATTACTGTTAAGAATGTGTATTTTTAGCGGCAACTACCATTCTTTGTATATGTCCCTAAAACCTTCAGTTGCATCGGTTCGAATGAGACTTAACTAATGAAGGTAAAGACTTTACCACTCTTTATTAATGTCAATATTTATTGCCGCTAAAAATTATTTTTGTTGTAGTGTGTATGCTGACCCTACCCCTGATTATTGTACAGAGATAGAGTATTTATTGTCTCCGAAAGACCCTCAACTCAAATAACTTGCACCAAAGTAGTGTGAAAAGGAAAATATAGAACTAAAGAAAACATAGCAAATAATAGGGAAAGGACATGAAAATAATGTGATAAACTAAAAACAAGAAACAACCAGTAGTAACAGAAATTGGAGAACAAAAATCTACGAAAATATTGTTAATACTATAGGTATGAAAGGAGATAAATGCACACTGCACCAAACTACCACCAAACCTATACCATAGGAAAGCAAGATGATGTTTAACTACGTACTTACCTTCAACCCTTTACCACGATCTCGATATCCTCCTATCTAAGATCATATTCCGTAAATTCATGCATGTGTGTCTAATTAATCACCCTTATCCAATATTTTTTTAGTCTACCTCTACCCCTCTTTAAACCCACCATTGTCGATTTCTCACACGTTCTCACTTGGGCATTTGCACATCTCTACGTCACAGACTCAATCATCTCAGCTTCGCTTCTCTCATCTTAGCCACCATGGATGCCACTCTAATAAATAGATCTATCTCTTTCATTTTGAATTGATATACCTGACCTGATTAAAATGCAAAAAACTTCTCATTCTAAAATAACCTAGTTAGAATCCTATTTAAGTAATATTGTATATCAATGGAAAAATTACCAACTGTAAATGAAAAAATAAAATAAAATTTTATACTATTAGGTCATGTAGTTAAGTTCAATATGCTTACTGGCTTATAATTTTTTTTTTGTTTATTTTTTGATTTTAGTATGGAAAGTATTCTTGAAAGATATGAAAGATGCTCATATGCAGAGAGACAGATGAATGCTAATGATTCTGATCCCAAGGTAAATGCAAATTAATAAATTTCAAATGTTTCTTTCTCTTGATTTATCCTTTAAATTTTATCATTGTTGGTTAAAAAAAAAACGAGGTCTTATAATGAAATATTGAAAGACTCTCTCCATTTTAATTTATATAATTCTTTTCCAATTTAAGTCAATCTAAAAATGATTATGGCCTTTTTTTCCACATTTGGAAAGAACCAAATTAATTAAAGCTTGCTACTTTATTTTTATTAGCAAGTCTCTATAGTAGATAGAAAAAAATGCTGTGAAAAATCTAAAATCATATGTAGAAGTCTTATTTTTTTCATAAATTTTGTGTATAATCAAATTGGTTCTTTACATAAAATGAATGGAAGATACTATTAAAGTGAAATACTTGCAGCATTTTTAAGTTAGAATTTTTTATTTTCACTCAGTGGCATAGCCACATAGAGATTAGGGTGTTCAATTGTCGGAAAAAAAGAACATGTATACTAACTAGTAAATGATTAAATAATATATTTTGGATATTCTTAACATAACAAGCTGCTATTTCTGAACAACTTTTAAGAAATTTCTGGATGCCACTGTTCTCACCAACTTTAGTCCAAGCAAAGTTCATGTTTTGAACATATAAAGCATACTTCAAATACATTTCCCCCCTCAATAAATTTCAAATTTAATATTTTCCCAGGCACTTGCTAATTAGTTTTCTAGTCTTTTGTTTTCCTTTTGATCTCATTAGATGTATTTGTTGTAGGAAAATTGGAGTGTGGAGTATCCGAAGCTCATGTCAAGAATTGAACTTTTACAAAGAAATATAAGGTATGCATACCCCTTCACTTCATTAGTAGTAATACACATGAAAAATGGGCGAATTCTTTCTACATTTGCAAAAGACGATGTAAGCCCATTTTTAATTGACACGTGAAAACAGTGTCTGTTTTAACGCCGAATTCAAATTGTTCATATAATATTAATTGTGTAGGCATTACATGGGTCAGGATCTGGACCCTCTCAGTTTGCGTGAGCTCCAGAGTATAGAGCAACAGATTGATACTTCATTAAAGAGAATTAGAAGCAGGAAGGTCCGTATTAATTAATTACTAATTGATATCAACTGTAGTTAATCTTTAAGGTTAATAGTATAAATTGAATAATATGCAGAATCAACTGATGCACGAGTCCATTTCTGAGCTGCAGAAAAAGGTAATAACGATATACTATTAATATTCTTCTCCATCGTCAATAATTATTCGGATTTACTTGAATCTATACAGTGTTTCTGTATTTATGATATTTGTGTTATAAGTAATACTTGCACTATATATGAGCAGGAGAAAGCGCTCCAAGAACAAAACAACTTGATTACTAAGAAGGTATACATACATATATTTTGCTTTCTAATATCTCAAACTTGTTCAATTTCTATCTGTCTCTATCTATAAATGTGAACCGAAAACAGCTAAAAGAAAATGAGAAGACACAACCCAACTCATCAGGCCAAAACTCAGCAACAGTTCATGTGTTTCCATCACATTCTCACCACCAACTTCCTAACCTTACAATTGGGTACGTACGAATAAATTTTACACTATCAGATTACCTAAAAAACATAATCATTGCGACATATAATTGCTTAACAACAAAATGTTTTCTGTATCCATATATTATATGTGTTGATCAGGGGGGCTTTTGGAGGAATGAACAGAGATGGATCGGGTCAGGCTCATCACTATCCGGGTTCAAATAACAATAATAATAATTCCTCATTGATACCGCCATGGATGCTCCGCCACGTCAGCAACGAAGGATGAAATAATATTCCGGAGAGTATAATTAATTAATTGTATATGTTTTGTTCCAAACAATATTAATCAACTTTCCTGTTTGTGATGTATAATTAGCTTAAGCTAATAAAACTTTTCATCCTT</genome_strand>
        <mrna_strand>TCTCTATCTATGCTAGGTAGCTTATATGATTTAATAGTTCGATTAATTTAAATACGCATTAAAGATAGAGGATGGGAAGAGGTAGGGTAGAGTTGAAACGGATCGAGAACAAAATAAGCAGACAAGTAACATTCTCAAAGAGACGATCTGGATTATTGAAGAAAGCTAATGAGATCTCAGTATTATGTGATGCTGATGTTGCATTGATTGTGTTTTCTACCAAAGGCAAACTTTTCGAGTATTCCTCAAATGACTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGAAAGTATTCTTGAAAGATATGAAAGATGCTCATATGCAGAGAGACAGATGAATGCTAATGATTCTGATCCCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATTGGAGTGTGGAGTATCCGAAGCTCATGTCAAGAATTGAACTTTTACAAAGAAATATAAG...................................................................................................................................................................GCATTACATGGGTCAGGATCTGGACCCTCTCAGTTTGCGTGAGCTCCAGAGTATAGAGCAACAGATTGATACTTCATTAAAGAGAATTAGAAGCAGGAAG...............................................................................AATCAACTGATGCACGAGTCCATTTCTGAGCTGCAGAAAAAG................................................................................................................................GAGAAAGCGCTCCAAGAACAAAACAACTTGATTACTAAGAAG......................................................................................CTAAAAGAAAATGAGAAGACACAACCCAACTCATCAGGCCAAAACTCAGCAACAGTTCATGTGTTTCCATCACATTCTCACCACCAACTTCCTAACCTTACAATTGG...................................................................................................................GGGGGCTTTTGGAGGAATGAACAGAGATGGATCGGGTCAGGCTCATCACTATCCGGGTTCAAATAACAATAATAATAATTCCTCATTGATACCGCCATGGATGCTCCGCCACGTCAGCAACGAAGGATGAAATAATATTCCGGAGAGTATAATTAATTAATTGTATATGTTTTGTTCCAAACAATATTAATCAACTTTCCTGTTTGTGATGTATAATTAGCTTAAGCTAATAAAACTTTTCATCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E393942" ref_strand="+" ref_description="SGN-E393942 [TUS-39-M16]">
      <seq>tctctatctatgctaggtagcttatatgatttaatagttcgattaatttaaatacgcattaaagatagaggatgggaagaggtagggtagagttgaaacggatcgagaacaaaataagcagacaagtaacattctcaaagagacgatctggattattgaagaaagctaatgagatctcagtattatgtgatgctgatgttgcattgattgtgttttctaccaaaggcaaacttttcgagtattcctcaaatgactcaagtatggaaagtattcttgaaagatatgaaagatgctcatatgcagagagacagatgaatgctaatgattctgatcccaaggaaaattggagtgtggagtatccgaagctcatgtcaagaattgaacttttacaaagaaatataaggcattacatgggtcaggatctggaccctctcagtttgcgtgagctccagagtatagagcaacagattgatacttcattaaagagaattagaagcaggaagaatcaactgatgcacgagtccatttctgagctgcagaaaaaggagaaagcgctccaagaacaaaacaacttgattactaagaggctaaaagaaaatgagaagacacaacccaactcatcaggccaaaactcagcaacagttcatgtgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="61026" stop="56019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60726" g_stop="60468" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="259" r_length="259" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60467" i_stop="57908" i_length="2560">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57907" g_stop="57829" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="338" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57828" i_stop="57090" i_length="739">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57089" g_stop="57025" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="403" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57024" i_stop="56862" i_length="163">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56861" g_stop="56762" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="503" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56761" i_stop="56683" i_length="79">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56682" g_stop="56641" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="545" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="56640" i_stop="56513" i_length="128">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="56512" g_stop="56471" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="587" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="56470" i_stop="56385" i_length="86">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="56384" g_stop="56319" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="653" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E393942" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60726" e_stop="60468"/>
          <exon e_start="57907" e_stop="57829"/>
          <exon e_start="57089" e_stop="57025"/>
          <exon e_start="56861" e_stop="56762"/>
          <exon e_start="56682" e_stop="56641"/>
          <exon e_start="56512" e_stop="56471"/>
          <exon e_start="56384" e_stop="56319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTATCTATGCTAGGTAGCTTATATGATTTAATAGTTCGATTAATTTAAATACGCATTAAAGATAGAGGATGGGAAGAGGTAGGGTAGAGTTGAAACGGATCGAGAACAAAATAAGCAGACAAGTAACATTCTCAAAGAGACGATCTGGATTATTGAAGAAAGCTAATGAGATCTCAGTATTATGTGATGCTGATGTTGCATTGATTGTGTTTTCTACCAAAGGCAAACTTTTCGAGTATTCCTCAAATGACTCAAGGTACTACTCTACCAATTTTATTCGAAATCTATGACTAAACGCTGCTATAGTTTTTTTCTATTGAAGCAACAAAATGATGTTTTACCTTTAAAAATTCCTAATTAGTGTATATATATATATATATATATATGTCATGTTAGTGTTTTGGTTTTTTATTTTTGACATAATTAGGTCACAAAAGTAATGAAGGAAAATTAAATCATATATGCTATGTATATTTAGTAAGCTAATTATTGATCAGCTCATTGATGTCCTCATGCACTAATTTGAGTAATTTCTATAATTGTTTGTATGGTAACTTATTACTTTATCTTTTCTCATTACATACGATTTAGATCGTTTGTTCTTAGCTTGGTGAATTTATTACATTGAAACTAGATCTCCTATTTCTTTCCAAAGAGTAAATCAAGTGATTATTGATCAGTAATCATGAACACATATTTCATACTTCTTAGCTCCCGTTTTGCCTTAGATTTTGAAACTTGAAAATTTGAGTTTTTTTTTTTTGAAAGTGTGCATTTCGGAACAAAAATTGTGTTAGAATTTTTACTTGGAAAATTTTTGAAGTTTTGTGAGCGAAAGTAAAAGTCATTCAACCTACTAAATAGTTTTGGAAATTTATCTAAAATTTATGACCAAAAGCTAACTTCATCATTGAAGCATTGAAATTTATTTATATTTGCTACACGAAATAAAAATGATATTTTACCCTTCAAATATCCCTAAAACTACCCTCATAAGTATATTACTTCCCTTGTGTTTTCCATGTATATTTTGCAGGTAGTCATGTTAGTGTATATTGACATAATTACATTACAATTAGATGAAATGCACAAAATACAACAAATTAAAAGCAAAAGCTGAAGAAAGAGCATTTCATTTTAAAGCCTAGAGCCTTGTGCCTCTTTGTCAGTTCATTCACTGATATATAGTACGAGGAGCACTCTTAATGACGTACATGTACTCCAATTATATTACTAACATTAATGATAACGCAGAGATTCTTTATACTGTCAACGTATAAATTATCTTCTGGTCAATTGATCTCTATTAATGACAAGTTAAATCTTATTAGTCGTTTGGTTTTCCGAACGAATTAATATTGATCCAAATCCTTCAGTTAGTTGTTTATAGTCTATGATTTCATGTTATATTAAAATTGATAAATAATCTTCTTGAAGTTTGTAATAGCAATGAATACATAACGAGTTATGTAAATCATGAGTTTAAAAGACCTACTAACTAGATTTGTTGAGGCCTCTAATATAGTTTTAACTTATTAAAGGCATATCTTATACAACATTGATAAATCTAAATGATTATGATGAATCTTGTAGAACAGACACAATTTTGTGGCAAAATATTGTCAAACAATCTCATCCAGCTACAAAAAAGAAAAGGCACAATCTAGGTATAGCTTTACCTGTTATAGTAAATTGTAAGCAACTTTTTATTTGATCATGAATGGAAGCTTTAATTAACAACCAAAACATAGCTAATGTAATTCTACAGGTGGAGTCTAAAGAGAATAGAGCTAATGTCATTACCTCAAAAATGATCACTAGTGACAATTAATTCTTAATTACTGTTAAGAATGTGTATTTTTAGCGGCAACTACCATTCTTTGTATATGTCCCTAAAACCTTCAGTTGCATCGGTTCGAATGAGACTTAACTAATGAAGGTAAAGACTTTACCACTCTTTATTAATGTCAATATTTATTGCCGCTAAAAATTATTTTTGTTGTAGTGTGTATGCTGACCCTACCCCTGATTATTGTACAGAGATAGAGTATTTATTGTCTCCGAAAGACCCTCAACTCAAATAACTTGCACCAAAGTAGTGTGAAAAGGAAAATATAGAACTAAAGAAAACATAGCAAATAATAGGGAAAGGACATGAAAATAATGTGATAAACTAAAAACAAGAAACAACCAGTAGTAACAGAAATTGGAGAACAAAAATCTACGAAAATATTGTTAATACTATAGGTATGAAAGGAGATAAATGCACACTGCACCAAACTACCACCAAACCTATACCATAGGAAAGCAAGATGATGTTTAACTACGTACTTACCTTCAACCCTTTACCACGATCTCGATATCCTCCTATCTAAGATCATATTCCGTAAATTCATGCATGTGTGTCTAATTAATCACCCTTATCCAATATTTTTTTAGTCTACCTCTACCCCTCTTTAAACCCACCATTGTCGATTTCTCACACGTTCTCACTTGGGCATTTGCACATCTCTACGTCACAGACTCAATCATCTCAGCTTCGCTTCTCTCATCTTAGCCACCATGGATGCCACTCTAATAAATAGATCTATCTCTTTCATTTTGAATTGATATACCTGACCTGATTAAAATGCAAAAAACTTCTCATTCTAAAATAACCTAGTTAGAATCCTATTTAAGTAATATTGTATATCAATGGAAAAATTACCAACTGTAAATGAAAAAATAAAATAAAATTTTATACTATTAGGTCATGTAGTTAAGTTCAATATGCTTACTGGCTTATAATTTTTTTTTTGTTTATTTTTTGATTTTAGTATGGAAAGTATTCTTGAAAGATATGAAAGATGCTCATATGCAGAGAGACAGATGAATGCTAATGATTCTGATCCCAAGGTAAATGCAAATTAATAAATTTCAAATGTTTCTTTCTCTTGATTTATCCTTTAAATTTTATCATTGTTGGTTAAAAAAAAAACGAGGTCTTATAATGAAATATTGAAAGACTCTCTCCATTTTAATTTATATAATTCTTTTCCAATTTAAGTCAATCTAAAAATGATTATGGCCTTTTTTTCCACATTTGGAAAGAACCAAATTAATTAAAGCTTGCTACTTTATTTTTATTAGCAAGTCTCTATAGTAGATAGAAAAAAATGCTGTGAAAAATCTAAAATCATATGTAGAAGTCTTATTTTTTTCATAAATTTTGTGTATAATCAAATTGGTTCTTTACATAAAATGAATGGAAGATACTATTAAAGTGAAATACTTGCAGCATTTTTAAGTTAGAATTTTTTATTTTCACTCAGTGGCATAGCCACATAGAGATTAGGGTGTTCAATTGTCGGAAAAAAAGAACATGTATACTAACTAGTAAATGATTAAATAATATATTTTGGATATTCTTAACATAACAAGCTGCTATTTCTGAACAACTTTTAAGAAATTTCTGGATGCCACTGTTCTCACCAACTTTAGTCCAAGCAAAGTTCATGTTTTGAACATATAAAGCATACTTCAAATACATTTCCCCCCTCAATAAATTTCAAATTTAATATTTTCCCAGGCACTTGCTAATTAGTTTTCTAGTCTTTTGTTTTCCTTTTGATCTCATTAGATGTATTTGTTGTAGGAAAATTGGAGTGTGGAGTATCCGAAGCTCATGTCAAGAATTGAACTTTTACAAAGAAATATAAGGTATGCATACCCCTTCACTTCATTAGTAGTAATACACATGAAAAATGGGCGAATTCTTTCTACATTTGCAAAAGACGATGTAAGCCCATTTTTAATTGACACGTGAAAACAGTGTCTGTTTTAACGCCGAATTCAAATTGTTCATATAATATTAATTGTGTAGGCATTACATGGGTCAGGATCTGGACCCTCTCAGTTTGCGTGAGCTCCAGAGTATAGAGCAACAGATTGATACTTCATTAAAGAGAATTAGAAGCAGGAAGGTCCGTATTAATTAATTACTAATTGATATCAACTGTAGTTAATCTTTAAGGTTAATAGTATAAATTGAATAATATGCAGAATCAACTGATGCACGAGTCCATTTCTGAGCTGCAGAAAAAGGTAATAACGATATACTATTAATATTCTTCTCCATCGTCAATAATTATTCGGATTTACTTGAATCTATACAGTGTTTCTGTATTTATGATATTTGTGTTATAAGTAATACTTGCACTATATATGAGCAGGAGAAAGCGCTCCAAGAACAAAACAACTTGATTACTAAGAAGGTATACATACATATATTTTGCTTTCTAATATCTCAAACTTGTTCAATTTCTATCTGTCTCTATCTATAAATGTGAACCGAAAACAGCTAAAAGAAAATGAGAAGACACAACCCAACTCATCAGGCCAAAACTCAGCAACAGTTCATGTGTTT</genome_strand>
        <mrna_strand>TCTCTATCTATGCTAGGTAGCTTATATGATTTAATAGTTCGATTAATTTAAATACGCATTAAAGATAGAGGATGGGAAGAGGTAGGGTAGAGTTGAAACGGATCGAGAACAAAATAAGCAGACAAGTAACATTCTCAAAGAGACGATCTGGATTATTGAAGAAAGCTAATGAGATCTCAGTATTATGTGATGCTGATGTTGCATTGATTGTGTTTTCTACCAAAGGCAAACTTTTCGAGTATTCCTCAAATGACTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGAAAGTATTCTTGAAAGATATGAAAGATGCTCATATGCAGAGAGACAGATGAATGCTAATGATTCTGATCCCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATTGGAGTGTGGAGTATCCGAAGCTCATGTCAAGAATTGAACTTTTACAAAGAAATATAAG...................................................................................................................................................................GCATTACATGGGTCAGGATCTGGACCCTCTCAGTTTGCGTGAGCTCCAGAGTATAGAGCAACAGATTGATACTTCATTAAAGAGAATTAGAAGCAGGAAG...............................................................................AATCAACTGATGCACGAGTCCATTTCTGAGCTGCAGAAAAAG................................................................................................................................GAGAAAGCGCTCCAAGAACAAAACAACTTGATTACTAAGAGG......................................................................................CTAAAAGAAAATGAGAAGACACAACCCAACTCATCAGGCCAAAACTCAGCAACAGTTCATGTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E394025" ref_strand="+" ref_description="SGN-E394025 [TUS-41-N15]">
      <seq>tctctatctatgctaggtagcttatatgatttaatagttcgattaatttaaatacgcattaaagatagaggatgggaagaggtagggtagagttgaaacggatcgagaacaaaataagcagacaagtaacattctcaaagagacgatctggattattgaagaaagctaatgagatctcagtattatgtgatgctgatgttgcattgattgtgttttctaccaaaggcaaacttttcgagtattcctcaaatgactcaagtatggaaagtattcttgaaagatatgaaagatgctcatatgcagagagacagatgaatgctaatgattctgatcccaaggaaaattggagtgtggagtatccgaagctcatgtcaagaattgaacttttacaaagaaatataaggcattacatgggtcaggatctggaccctctcagtttgcgtgagctccagagtatagagcaacagattgatacttcattaaagagaattagaagcaggaagaatcaactgatgcacgagtccatttctgagctgcagaaaaaggagaaagcgctccaagaacaaaacaacttgattactaagaagctaaaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="61026" stop="56162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60726" g_stop="60468" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="259" r_length="259" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60467" i_stop="57908" i_length="2560">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57907" g_stop="57829" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="338" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57828" i_stop="57090" i_length="739">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57089" g_stop="57025" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="403" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57024" i_stop="56862" i_length="163">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56861" g_stop="56762" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="503" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56761" i_stop="56683" i_length="79">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56682" g_stop="56641" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="545" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="56640" i_stop="56513" i_length="128">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="56512" g_stop="56471" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="587" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="56470" i_stop="56385" i_length="86">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="56384" g_stop="56376" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="596" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E394025" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E394025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60726" e_stop="60468"/>
          <exon e_start="57907" e_stop="57829"/>
          <exon e_start="57089" e_stop="57025"/>
          <exon e_start="56861" e_stop="56762"/>
          <exon e_start="56682" e_stop="56641"/>
          <exon e_start="56512" e_stop="56471"/>
          <exon e_start="56384" e_stop="56376"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTATCTATGCTAGGTAGCTTATATGATTTAATAGTTCGATTAATTTAAATACGCATTAAAGATAGAGGATGGGAAGAGGTAGGGTAGAGTTGAAACGGATCGAGAACAAAATAAGCAGACAAGTAACATTCTCAAAGAGACGATCTGGATTATTGAAGAAAGCTAATGAGATCTCAGTATTATGTGATGCTGATGTTGCATTGATTGTGTTTTCTACCAAAGGCAAACTTTTCGAGTATTCCTCAAATGACTCAAGGTACTACTCTACCAATTTTATTCGAAATCTATGACTAAACGCTGCTATAGTTTTTTTCTATTGAAGCAACAAAATGATGTTTTACCTTTAAAAATTCCTAATTAGTGTATATATATATATATATATATATGTCATGTTAGTGTTTTGGTTTTTTATTTTTGACATAATTAGGTCACAAAAGTAATGAAGGAAAATTAAATCATATATGCTATGTATATTTAGTAAGCTAATTATTGATCAGCTCATTGATGTCCTCATGCACTAATTTGAGTAATTTCTATAATTGTTTGTATGGTAACTTATTACTTTATCTTTTCTCATTACATACGATTTAGATCGTTTGTTCTTAGCTTGGTGAATTTATTACATTGAAACTAGATCTCCTATTTCTTTCCAAAGAGTAAATCAAGTGATTATTGATCAGTAATCATGAACACATATTTCATACTTCTTAGCTCCCGTTTTGCCTTAGATTTTGAAACTTGAAAATTTGAGTTTTTTTTTTTTGAAAGTGTGCATTTCGGAACAAAAATTGTGTTAGAATTTTTACTTGGAAAATTTTTGAAGTTTTGTGAGCGAAAGTAAAAGTCATTCAACCTACTAAATAGTTTTGGAAATTTATCTAAAATTTATGACCAAAAGCTAACTTCATCATTGAAGCATTGAAATTTATTTATATTTGCTACACGAAATAAAAATGATATTTTACCCTTCAAATATCCCTAAAACTACCCTCATAAGTATATTACTTCCCTTGTGTTTTCCATGTATATTTTGCAGGTAGTCATGTTAGTGTATATTGACATAATTACATTACAATTAGATGAAATGCACAAAATACAACAAATTAAAAGCAAAAGCTGAAGAAAGAGCATTTCATTTTAAAGCCTAGAGCCTTGTGCCTCTTTGTCAGTTCATTCACTGATATATAGTACGAGGAGCACTCTTAATGACGTACATGTACTCCAATTATATTACTAACATTAATGATAACGCAGAGATTCTTTATACTGTCAACGTATAAATTATCTTCTGGTCAATTGATCTCTATTAATGACAAGTTAAATCTTATTAGTCGTTTGGTTTTCCGAACGAATTAATATTGATCCAAATCCTTCAGTTAGTTGTTTATAGTCTATGATTTCATGTTATATTAAAATTGATAAATAATCTTCTTGAAGTTTGTAATAGCAATGAATACATAACGAGTTATGTAAATCATGAGTTTAAAAGACCTACTAACTAGATTTGTTGAGGCCTCTAATATAGTTTTAACTTATTAAAGGCATATCTTATACAACATTGATAAATCTAAATGATTATGATGAATCTTGTAGAACAGACACAATTTTGTGGCAAAATATTGTCAAACAATCTCATCCAGCTACAAAAAAGAAAAGGCACAATCTAGGTATAGCTTTACCTGTTATAGTAAATTGTAAGCAACTTTTTATTTGATCATGAATGGAAGCTTTAATTAACAACCAAAACATAGCTAATGTAATTCTACAGGTGGAGTCTAAAGAGAATAGAGCTAATGTCATTACCTCAAAAATGATCACTAGTGACAATTAATTCTTAATTACTGTTAAGAATGTGTATTTTTAGCGGCAACTACCATTCTTTGTATATGTCCCTAAAACCTTCAGTTGCATCGGTTCGAATGAGACTTAACTAATGAAGGTAAAGACTTTACCACTCTTTATTAATGTCAATATTTATTGCCGCTAAAAATTATTTTTGTTGTAGTGTGTATGCTGACCCTACCCCTGATTATTGTACAGAGATAGAGTATTTATTGTCTCCGAAAGACCCTCAACTCAAATAACTTGCACCAAAGTAGTGTGAAAAGGAAAATATAGAACTAAAGAAAACATAGCAAATAATAGGGAAAGGACATGAAAATAATGTGATAAACTAAAAACAAGAAACAACCAGTAGTAACAGAAATTGGAGAACAAAAATCTACGAAAATATTGTTAATACTATAGGTATGAAAGGAGATAAATGCACACTGCACCAAACTACCACCAAACCTATACCATAGGAAAGCAAGATGATGTTTAACTACGTACTTACCTTCAACCCTTTACCACGATCTCGATATCCTCCTATCTAAGATCATATTCCGTAAATTCATGCATGTGTGTCTAATTAATCACCCTTATCCAATATTTTTTTAGTCTACCTCTACCCCTCTTTAAACCCACCATTGTCGATTTCTCACACGTTCTCACTTGGGCATTTGCACATCTCTACGTCACAGACTCAATCATCTCAGCTTCGCTTCTCTCATCTTAGCCACCATGGATGCCACTCTAATAAATAGATCTATCTCTTTCATTTTGAATTGATATACCTGACCTGATTAAAATGCAAAAAACTTCTCATTCTAAAATAACCTAGTTAGAATCCTATTTAAGTAATATTGTATATCAATGGAAAAATTACCAACTGTAAATGAAAAAATAAAATAAAATTTTATACTATTAGGTCATGTAGTTAAGTTCAATATGCTTACTGGCTTATAATTTTTTTTTTGTTTATTTTTTGATTTTAGTATGGAAAGTATTCTTGAAAGATATGAAAGATGCTCATATGCAGAGAGACAGATGAATGCTAATGATTCTGATCCCAAGGTAAATGCAAATTAATAAATTTCAAATGTTTCTTTCTCTTGATTTATCCTTTAAATTTTATCATTGTTGGTTAAAAAAAAAACGAGGTCTTATAATGAAATATTGAAAGACTCTCTCCATTTTAATTTATATAATTCTTTTCCAATTTAAGTCAATCTAAAAATGATTATGGCCTTTTTTTCCACATTTGGAAAGAACCAAATTAATTAAAGCTTGCTACTTTATTTTTATTAGCAAGTCTCTATAGTAGATAGAAAAAAATGCTGTGAAAAATCTAAAATCATATGTAGAAGTCTTATTTTTTTCATAAATTTTGTGTATAATCAAATTGGTTCTTTACATAAAATGAATGGAAGATACTATTAAAGTGAAATACTTGCAGCATTTTTAAGTTAGAATTTTTTATTTTCACTCAGTGGCATAGCCACATAGAGATTAGGGTGTTCAATTGTCGGAAAAAAAGAACATGTATACTAACTAGTAAATGATTAAATAATATATTTTGGATATTCTTAACATAACAAGCTGCTATTTCTGAACAACTTTTAAGAAATTTCTGGATGCCACTGTTCTCACCAACTTTAGTCCAAGCAAAGTTCATGTTTTGAACATATAAAGCATACTTCAAATACATTTCCCCCCTCAATAAATTTCAAATTTAATATTTTCCCAGGCACTTGCTAATTAGTTTTCTAGTCTTTTGTTTTCCTTTTGATCTCATTAGATGTATTTGTTGTAGGAAAATTGGAGTGTGGAGTATCCGAAGCTCATGTCAAGAATTGAACTTTTACAAAGAAATATAAGGTATGCATACCCCTTCACTTCATTAGTAGTAATACACATGAAAAATGGGCGAATTCTTTCTACATTTGCAAAAGACGATGTAAGCCCATTTTTAATTGACACGTGAAAACAGTGTCTGTTTTAACGCCGAATTCAAATTGTTCATATAATATTAATTGTGTAGGCATTACATGGGTCAGGATCTGGACCCTCTCAGTTTGCGTGAGCTCCAGAGTATAGAGCAACAGATTGATACTTCATTAAAGAGAATTAGAAGCAGGAAGGTCCGTATTAATTAATTACTAATTGATATCAACTGTAGTTAATCTTTAAGGTTAATAGTATAAATTGAATAATATGCAGAATCAACTGATGCACGAGTCCATTTCTGAGCTGCAGAAAAAGGTAATAACGATATACTATTAATATTCTTCTCCATCGTCAATAATTATTCGGATTTACTTGAATCTATACAGTGTTTCTGTATTTATGATATTTGTGTTATAAGTAATACTTGCACTATATATGAGCAGGAGAAAGCGCTCCAAGAACAAAACAACTTGATTACTAAGAAGGTATACATACATATATTTTGCTTTCTAATATCTCAAACTTGTTCAATTTCTATCTGTCTCTATCTATAAATGTGAACCGAAAACAGCTAAAAGAA</genome_strand>
        <mrna_strand>TCTCTATCTATGCTAGGTAGCTTATATGATTTAATAGTTCGATTAATTTAAATACGCATTAAAGATAGAGGATGGGAAGAGGTAGGGTAGAGTTGAAACGGATCGAGAACAAAATAAGCAGACAAGTAACATTCTCAAAGAGACGATCTGGATTATTGAAGAAAGCTAATGAGATCTCAGTATTATGTGATGCTGATGTTGCATTGATTGTGTTTTCTACCAAAGGCAAACTTTTCGAGTATTCCTCAAATGACTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGAAAGTATTCTTGAAAGATATGAAAGATGCTCATATGCAGAGAGACAGATGAATGCTAATGATTCTGATCCCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATTGGAGTGTGGAGTATCCGAAGCTCATGTCAAGAATTGAACTTTTACAAAGAAATATAAG...................................................................................................................................................................GCATTACATGGGTCAGGATCTGGACCCTCTCAGTTTGCGTGAGCTCCAGAGTATAGAGCAACAGATTGATACTTCATTAAAGAGAATTAGAAGCAGGAAG...............................................................................AATCAACTGATGCACGAGTCCATTTCTGAGCTGCAGAAAAAG................................................................................................................................GAGAAAGCGCTCCAAGAACAAAACAACTTGATTACTAAGAAG......................................................................................CTAAAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E689189" ref_strand="+" ref_description="SGN-E689189 [t3_tus_80_H20]">
      <seq>ggaaagcaagatgatttttaactacgtacttaccttcaaccctttaccacgatctcgatatcctcctatctnagatcatattccgtaaattcatgcatgtgtgtctaattaatcacccttatccaatatttttttagtctacctctacccctctttaaacccaccattgtcgatttctcacacgttctcacttgggcatttgcacatctctacgtcacagactcaatcatctcagcttcgcttctctcatcttagccaccatggatgccactctaataaatagatctatctctttcattttgaattgatatacctgacctgattaaaatgcaaaaaacttctcattctaaaataacctagttagaatcctatttaagtaatattgtatatcaatggaaaaattaccaactgtaaatgaaaaaataaaataaaattttatactattaggtcatgtagttaagttcaatatgcttactggcttataattttttttttgtttattttttgattttagtatggaaagtattcttgaaagatatgaaagatgctcatatgcagagagacagatgaatgctaatgattctgatcccaaggaaaattggagtgtggagtatccgaagctcatgtcaagaattgaacttttacaaagaaatataaggcattacatgggtcaggatctggaccctctcagtttgcgtgagctccagagtatagagcaacagattgatacttcattaaagagaattagaagcaggaagaatcaactgatgcacgagtccatttctgagctgcagaaaaaggagaaagcgctccaagaacaaaacaacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="58721" stop="56183"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58421" g_stop="57829" g_length="593"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="593" r_length="593" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57828" i_stop="57090" i_length="739">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57089" g_stop="57025" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="658" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57024" i_stop="56862" i_length="163">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56861" g_stop="56762" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="659" r_stop="758" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56761" i_stop="56683" i_length="79">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56682" g_stop="56641" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="759" r_stop="800" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56640" i_stop="56513" i_length="128">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56512" g_stop="56483" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="801" r_stop="830" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E689189" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>830</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689189" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58421" e_stop="57829"/>
          <exon e_start="57089" e_stop="57025"/>
          <exon e_start="56861" e_stop="56762"/>
          <exon e_start="56682" e_stop="56641"/>
          <exon e_start="56512" e_stop="56483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAGCAAGATGATGTTTAACTACGTACTTACCTTCAACCCTTTACCACGATCTCGATATCCTCCTATCTAAGATCATATTCCGTAAATTCATGCATGTGTGTCTAATTAATCACCCTTATCCAATATTTTTTTAGTCTACCTCTACCCCTCTTTAAACCCACCATTGTCGATTTCTCACACGTTCTCACTTGGGCATTTGCACATCTCTACGTCACAGACTCAATCATCTCAGCTTCGCTTCTCTCATCTTAGCCACCATGGATGCCACTCTAATAAATAGATCTATCTCTTTCATTTTGAATTGATATACCTGACCTGATTAAAATGCAAAAAACTTCTCATTCTAAAATAACCTAGTTAGAATCCTATTTAAGTAATATTGTATATCAATGGAAAAATTACCAACTGTAAATGAAAAAATAAAATAAAATTTTATACTATTAGGTCATGTAGTTAAGTTCAATATGCTTACTGGCTTATAATTTTTTTTTTGTTTATTTTTTGATTTTAGTATGGAAAGTATTCTTGAAAGATATGAAAGATGCTCATATGCAGAGAGACAGATGAATGCTAATGATTCTGATCCCAAGGTAAATGCAAATTAATAAATTTCAAATGTTTCTTTCTCTTGATTTATCCTTTAAATTTTATCATTGTTGGTTAAAAAAAAAACGAGGTCTTATAATGAAATATTGAAAGACTCTCTCCATTTTAATTTATATAATTCTTTTCCAATTTAAGTCAATCTAAAAATGATTATGGCCTTTTTTTCCACATTTGGAAAGAACCAAATTAATTAAAGCTTGCTACTTTATTTTTATTAGCAAGTCTCTATAGTAGATAGAAAAAAATGCTGTGAAAAATCTAAAATCATATGTAGAAGTCTTATTTTTTTCATAAATTTTGTGTATAATCAAATTGGTTCTTTACATAAAATGAATGGAAGATACTATTAAAGTGAAATACTTGCAGCATTTTTAAGTTAGAATTTTTTATTTTCACTCAGTGGCATAGCCACATAGAGATTAGGGTGTTCAATTGTCGGAAAAAAAGAACATGTATACTAACTAGTAAATGATTAAATAATATATTTTGGATATTCTTAACATAACAAGCTGCTATTTCTGAACAACTTTTAAGAAATTTCTGGATGCCACTGTTCTCACCAACTTTAGTCCAAGCAAAGTTCATGTTTTGAACATATAAAGCATACTTCAAATACATTTCCCCCCTCAATAAATTTCAAATTTAATATTTTCCCAGGCACTTGCTAATTAGTTTTCTAGTCTTTTGTTTTCCTTTTGATCTCATTAGATGTATTTGTTGTAGGAAAATTGGAGTGTGGAGTATCCGAAGCTCATGTCAAGAATTGAACTTTTACAAAGAAATATAAGGTATGCATACCCCTTCACTTCATTAGTAGTAATACACATGAAAAATGGGCGAATTCTTTCTACATTTGCAAAAGACGATGTAAGCCCATTTTTAATTGACACGTGAAAACAGTGTCTGTTTTAACGCCGAATTCAAATTGTTCATATAATATTAATTGTGTAGGCATTACATGGGTCAGGATCTGGACCCTCTCAGTTTGCGTGAGCTCCAGAGTATAGAGCAACAGATTGATACTTCATTAAAGAGAATTAGAAGCAGGAAGGTCCGTATTAATTAATTACTAATTGATATCAACTGTAGTTAATCTTTAAGGTTAATAGTATAAATTGAATAATATGCAGAATCAACTGATGCACGAGTCCATTTCTGAGCTGCAGAAAAAGGTAATAACGATATACTATTAATATTCTTCTCCATCGTCAATAATTATTCGGATTTACTTGAATCTATACAGTGTTTCTGTATTTATGATATTTGTGTTATAAGTAATACTTGCACTATATATGAGCAGGAGAAAGCGCTCCAAGAACAAAACAACTTG</genome_strand>
        <mrna_strand>GGAAAGCAAGATGATTTTTAACTACGTACTTACCTTCAACCCTTTACCACGATCTCGATATCCTCCTATCTNAGATCATATTCCGTAAATTCATGCATGTGTGTCTAATTAATCACCCTTATCCAATATTTTTTTAGTCTACCTCTACCCCTCTTTAAACCCACCATTGTCGATTTCTCACACGTTCTCACTTGGGCATTTGCACATCTCTACGTCACAGACTCAATCATCTCAGCTTCGCTTCTCTCATCTTAGCCACCATGGATGCCACTCTAATAAATAGATCTATCTCTTTCATTTTGAATTGATATACCTGACCTGATTAAAATGCAAAAAACTTCTCATTCTAAAATAACCTAGTTAGAATCCTATTTAAGTAATATTGTATATCAATGGAAAAATTACCAACTGTAAATGAAAAAATAAAATAAAATTTTATACTATTAGGTCATGTAGTTAAGTTCAATATGCTTACTGGCTTATAATTTTTTTTTTGTTTATTTTTTGATTTTAGTATGGAAAGTATTCTTGAAAGATATGAAAGATGCTCATATGCAGAGAGACAGATGAATGCTAATGATTCTGATCCCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATTGGAGTGTGGAGTATCCGAAGCTCATGTCAAGAATTGAACTTTTACAAAGAAATATAAG...................................................................................................................................................................GCATTACATGGGTCAGGATCTGGACCCTCTCAGTTTGCGTGAGCTCCAGAGTATAGAGCAACAGATTGATACTTCATTAAAGAGAATTAGAAGCAGGAAG...............................................................................AATCAACTGATGCACGAGTCCATTTCTGAGCTGCAGAAAAAG................................................................................................................................GAGAAAGCGCTCCAAGAACAAAACAACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E305490" ref_strand="+" ref_description="SGN-E305490 [cLEX-15-F2]">
      <seq>ctctatctatgctaggtagcttatatgatttaatagttcgattaatttaaatacgcattaaagatagaggatgggaagaggtagggtagagttgaaacggatcgagaacaaaataagcagacaagtaacattctcaaagagacgatctggattattgaagaaagctaatgagatctcagtattatgtgatgctgatgttgcattgattgtgttttctaccaaaggcaaacttttcgagtattcctcaaatgactcaagtatggaaagtattcttgaaagatatgaaagatgctcatatgcagagagacagatgaatgctaatgattctgatcccaaggaaaattggagtgtggagtatccgaagctcatgtcaagaattgaacttttacaaagaaatataaggcattacatgggtcaggatctggaccctctcagtttgcgtgagctccagagtatagagcaacagattgatacttcattaaagagaattagaagcaggaagaatcaactgatgcacgagtccatttctgagctgcagaaaaaggagaaagcgctccaagaacaaaacaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="61025" stop="56185"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60725" g_stop="60468" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60467" i_stop="57908" i_length="2560">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57907" g_stop="57829" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="337" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57828" i_stop="57090" i_length="739">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57089" g_stop="57025" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="402" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57024" i_stop="56862" i_length="163">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56861" g_stop="56762" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="502" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56761" i_stop="56683" i_length="79">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56682" g_stop="56641" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="544" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="56640" i_stop="56513" i_length="128">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="56512" g_stop="56485" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="572" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E305490" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60725" e_stop="60468"/>
          <exon e_start="57907" e_stop="57829"/>
          <exon e_start="57089" e_stop="57025"/>
          <exon e_start="56861" e_stop="56762"/>
          <exon e_start="56682" e_stop="56641"/>
          <exon e_start="56512" e_stop="56485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTATCTATGCTAGGTAGCTTATATGATTTAATAGTTCGATTAATTTAAATACGCATTAAAGATAGAGGATGGGAAGAGGTAGGGTAGAGTTGAAACGGATCGAGAACAAAATAAGCAGACAAGTAACATTCTCAAAGAGACGATCTGGATTATTGAAGAAAGCTAATGAGATCTCAGTATTATGTGATGCTGATGTTGCATTGATTGTGTTTTCTACCAAAGGCAAACTTTTCGAGTATTCCTCAAATGACTCAAGGTACTACTCTACCAATTTTATTCGAAATCTATGACTAAACGCTGCTATAGTTTTTTTCTATTGAAGCAACAAAATGATGTTTTACCTTTAAAAATTCCTAATTAGTGTATATATATATATATATATATATGTCATGTTAGTGTTTTGGTTTTTTATTTTTGACATAATTAGGTCACAAAAGTAATGAAGGAAAATTAAATCATATATGCTATGTATATTTAGTAAGCTAATTATTGATCAGCTCATTGATGTCCTCATGCACTAATTTGAGTAATTTCTATAATTGTTTGTATGGTAACTTATTACTTTATCTTTTCTCATTACATACGATTTAGATCGTTTGTTCTTAGCTTGGTGAATTTATTACATTGAAACTAGATCTCCTATTTCTTTCCAAAGAGTAAATCAAGTGATTATTGATCAGTAATCATGAACACATATTTCATACTTCTTAGCTCCCGTTTTGCCTTAGATTTTGAAACTTGAAAATTTGAGTTTTTTTTTTTTGAAAGTGTGCATTTCGGAACAAAAATTGTGTTAGAATTTTTACTTGGAAAATTTTTGAAGTTTTGTGAGCGAAAGTAAAAGTCATTCAACCTACTAAATAGTTTTGGAAATTTATCTAAAATTTATGACCAAAAGCTAACTTCATCATTGAAGCATTGAAATTTATTTATATTTGCTACACGAAATAAAAATGATATTTTACCCTTCAAATATCCCTAAAACTACCCTCATAAGTATATTACTTCCCTTGTGTTTTCCATGTATATTTTGCAGGTAGTCATGTTAGTGTATATTGACATAATTACATTACAATTAGATGAAATGCACAAAATACAACAAATTAAAAGCAAAAGCTGAAGAAAGAGCATTTCATTTTAAAGCCTAGAGCCTTGTGCCTCTTTGTCAGTTCATTCACTGATATATAGTACGAGGAGCACTCTTAATGACGTACATGTACTCCAATTATATTACTAACATTAATGATAACGCAGAGATTCTTTATACTGTCAACGTATAAATTATCTTCTGGTCAATTGATCTCTATTAATGACAAGTTAAATCTTATTAGTCGTTTGGTTTTCCGAACGAATTAATATTGATCCAAATCCTTCAGTTAGTTGTTTATAGTCTATGATTTCATGTTATATTAAAATTGATAAATAATCTTCTTGAAGTTTGTAATAGCAATGAATACATAACGAGTTATGTAAATCATGAGTTTAAAAGACCTACTAACTAGATTTGTTGAGGCCTCTAATATAGTTTTAACTTATTAAAGGCATATCTTATACAACATTGATAAATCTAAATGATTATGATGAATCTTGTAGAACAGACACAATTTTGTGGCAAAATATTGTCAAACAATCTCATCCAGCTACAAAAAAGAAAAGGCACAATCTAGGTATAGCTTTACCTGTTATAGTAAATTGTAAGCAACTTTTTATTTGATCATGAATGGAAGCTTTAATTAACAACCAAAACATAGCTAATGTAATTCTACAGGTGGAGTCTAAAGAGAATAGAGCTAATGTCATTACCTCAAAAATGATCACTAGTGACAATTAATTCTTAATTACTGTTAAGAATGTGTATTTTTAGCGGCAACTACCATTCTTTGTATATGTCCCTAAAACCTTCAGTTGCATCGGTTCGAATGAGACTTAACTAATGAAGGTAAAGACTTTACCACTCTTTATTAATGTCAATATTTATTGCCGCTAAAAATTATTTTTGTTGTAGTGTGTATGCTGACCCTACCCCTGATTATTGTACAGAGATAGAGTATTTATTGTCTCCGAAAGACCCTCAACTCAAATAACTTGCACCAAAGTAGTGTGAAAAGGAAAATATAGAACTAAAGAAAACATAGCAAATAATAGGGAAAGGACATGAAAATAATGTGATAAACTAAAAACAAGAAACAACCAGTAGTAACAGAAATTGGAGAACAAAAATCTACGAAAATATTGTTAATACTATAGGTATGAAAGGAGATAAATGCACACTGCACCAAACTACCACCAAACCTATACCATAGGAAAGCAAGATGATGTTTAACTACGTACTTACCTTCAACCCTTTACCACGATCTCGATATCCTCCTATCTAAGATCATATTCCGTAAATTCATGCATGTGTGTCTAATTAATCACCCTTATCCAATATTTTTTTAGTCTACCTCTACCCCTCTTTAAACCCACCATTGTCGATTTCTCACACGTTCTCACTTGGGCATTTGCACATCTCTACGTCACAGACTCAATCATCTCAGCTTCGCTTCTCTCATCTTAGCCACCATGGATGCCACTCTAATAAATAGATCTATCTCTTTCATTTTGAATTGATATACCTGACCTGATTAAAATGCAAAAAACTTCTCATTCTAAAATAACCTAGTTAGAATCCTATTTAAGTAATATTGTATATCAATGGAAAAATTACCAACTGTAAATGAAAAAATAAAATAAAATTTTATACTATTAGGTCATGTAGTTAAGTTCAATATGCTTACTGGCTTATAATTTTTTTTTTGTTTATTTTTTGATTTTAGTATGGAAAGTATTCTTGAAAGATATGAAAGATGCTCATATGCAGAGAGACAGATGAATGCTAATGATTCTGATCCCAAGGTAAATGCAAATTAATAAATTTCAAATGTTTCTTTCTCTTGATTTATCCTTTAAATTTTATCATTGTTGGTTAAAAAAAAAACGAGGTCTTATAATGAAATATTGAAAGACTCTCTCCATTTTAATTTATATAATTCTTTTCCAATTTAAGTCAATCTAAAAATGATTATGGCCTTTTTTTCCACATTTGGAAAGAACCAAATTAATTAAAGCTTGCTACTTTATTTTTATTAGCAAGTCTCTATAGTAGATAGAAAAAAATGCTGTGAAAAATCTAAAATCATATGTAGAAGTCTTATTTTTTTCATAAATTTTGTGTATAATCAAATTGGTTCTTTACATAAAATGAATGGAAGATACTATTAAAGTGAAATACTTGCAGCATTTTTAAGTTAGAATTTTTTATTTTCACTCAGTGGCATAGCCACATAGAGATTAGGGTGTTCAATTGTCGGAAAAAAAGAACATGTATACTAACTAGTAAATGATTAAATAATATATTTTGGATATTCTTAACATAACAAGCTGCTATTTCTGAACAACTTTTAAGAAATTTCTGGATGCCACTGTTCTCACCAACTTTAGTCCAAGCAAAGTTCATGTTTTGAACATATAAAGCATACTTCAAATACATTTCCCCCCTCAATAAATTTCAAATTTAATATTTTCCCAGGCACTTGCTAATTAGTTTTCTAGTCTTTTGTTTTCCTTTTGATCTCATTAGATGTATTTGTTGTAGGAAAATTGGAGTGTGGAGTATCCGAAGCTCATGTCAAGAATTGAACTTTTACAAAGAAATATAAGGTATGCATACCCCTTCACTTCATTAGTAGTAATACACATGAAAAATGGGCGAATTCTTTCTACATTTGCAAAAGACGATGTAAGCCCATTTTTAATTGACACGTGAAAACAGTGTCTGTTTTAACGCCGAATTCAAATTGTTCATATAATATTAATTGTGTAGGCATTACATGGGTCAGGATCTGGACCCTCTCAGTTTGCGTGAGCTCCAGAGTATAGAGCAACAGATTGATACTTCATTAAAGAGAATTAGAAGCAGGAAGGTCCGTATTAATTAATTACTAATTGATATCAACTGTAGTTAATCTTTAAGGTTAATAGTATAAATTGAATAATATGCAGAATCAACTGATGCACGAGTCCATTTCTGAGCTGCAGAAAAAGGTAATAACGATATACTATTAATATTCTTCTCCATCGTCAATAATTATTCGGATTTACTTGAATCTATACAGTGTTTCTGTATTTATGATATTTGTGTTATAAGTAATACTTGCACTATATATGAGCAGGAGAAAGCGCTCCAAGAACAAAACAACT</genome_strand>
        <mrna_strand>CTCTATCTATGCTAGGTAGCTTATATGATTTAATAGTTCGATTAATTTAAATACGCATTAAAGATAGAGGATGGGAAGAGGTAGGGTAGAGTTGAAACGGATCGAGAACAAAATAAGCAGACAAGTAACATTCTCAAAGAGACGATCTGGATTATTGAAGAAAGCTAATGAGATCTCAGTATTATGTGATGCTGATGTTGCATTGATTGTGTTTTCTACCAAAGGCAAACTTTTCGAGTATTCCTCAAATGACTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGAAAGTATTCTTGAAAGATATGAAAGATGCTCATATGCAGAGAGACAGATGAATGCTAATGATTCTGATCCCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATTGGAGTGTGGAGTATCCGAAGCTCATGTCAAGAATTGAACTTTTACAAAGAAATATAAG...................................................................................................................................................................GCATTACATGGGTCAGGATCTGGACCCTCTCAGTTTGCGTGAGCTCCAGAGTATAGAGCAACAGATTGATACTTCATTAAAGAGAATTAGAAGCAGGAAG...............................................................................AATCAACTGATGCACGAGTCCATTTCTGAGCTGCAGAAAAAG................................................................................................................................GAGAAAGCGCTCCAAGAACAAAACAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E324579" ref_strand="+" ref_description="SGN-E324579 [cTOC-9-N23]">
      <seq>gaaagcaagatgatgtttaactacgtacttaccttcaaccctttaccacgatctcgatatcctcctatctaagatcatattccgtaaattcatgcatgtgtgtctaattaatcacccttatccaatatttttttagtctacctctacccctctttaaacccaccattgtcgatttctcacacgttctcacttgggcatttgcacatctctacgtcacagactcaatcatctcagcttcgcttctctcatcttagccaccatggatgccactctaataaatagatctatctctttcattttgaattgatatacctgacctgattaaaatgcaaaaaacttctcattctaaaataacctagttagaatcctatttaagtaatattgtatatcaatggaaaaattaccaactgtgaatgaaaaaataaaataaaattttatactattaggtcatgtagttaagttcaatatgcttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="58720" stop="57646"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58420" g_stop="57946" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="475" r_length="475" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E324579" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324579" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58420" e_stop="57946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGCAAGATGATGTTTAACTACGTACTTACCTTCAACCCTTTACCACGATCTCGATATCCTCCTATCTAAGATCATATTCCGTAAATTCATGCATGTGTGTCTAATTAATCACCCTTATCCAATATTTTTTTAGTCTACCTCTACCCCTCTTTAAACCCACCATTGTCGATTTCTCACACGTTCTCACTTGGGCATTTGCACATCTCTACGTCACAGACTCAATCATCTCAGCTTCGCTTCTCTCATCTTAGCCACCATGGATGCCACTCTAATAAATAGATCTATCTCTTTCATTTTGAATTGATATACCTGACCTGATTAAAATGCAAAAAACTTCTCATTCTAAAATAACCTAGTTAGAATCCTATTTAAGTAATATTGTATATCAATGGAAAAATTACCAACTGTAAATGAAAAAATAAAATAAAATTTTATACTATTAGGTCATGTAGTTAAGTTCAATATGCTTACT</genome_strand>
        <mrna_strand>GAAAGCAAGATGATGTTTAACTACGTACTTACCTTCAACCCTTTACCACGATCTCGATATCCTCCTATCTAAGATCATATTCCGTAAATTCATGCATGTGTGTCTAATTAATCACCCTTATCCAATATTTTTTTAGTCTACCTCTACCCCTCTTTAAACCCACCATTGTCGATTTCTCACACGTTCTCACTTGGGCATTTGCACATCTCTACGTCACAGACTCAATCATCTCAGCTTCGCTTCTCTCATCTTAGCCACCATGGATGCCACTCTAATAAATAGATCTATCTCTTTCATTTTGAATTGATATACCTGACCTGATTAAAATGCAAAAAACTTCTCATTCTAAAATAACCTAGTTAGAATCCTATTTAAGTAATATTGTATATCAATGGAAAAATTACCAACTGTGAATGAAAAAATAAAATAAAATTTTATACTATTAGGTCATGTAGTTAAGTTCAATATGCTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E252375" ref_strand="-" ref_description="SGN-E252375 [cLEG-12-O9]">
      <seq>aaacgtgaatggtatgatacctggttggatgctgtgaatgaaaaagtcctttatcttcagctgtgcataaaagcatatgaagtatatttctataataataaaggaaaactccagtacctttattttcagcaaaataccctaattaaggttatcgttgtgaaccattttcttggcataaaaacaaacttgtttgcttgaaaatgttttattttattcaaatcataatgtggatgttgctgaatatgatgattattagcatctttcatgtgaattcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="70632" stop="69758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70332" g_stop="70058" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="276" polyA_stop="289"/>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E252375" ref_strand="-">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>275</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E252375" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="70332" e_stop="70058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACGTGAATGGTATGATACCTGGTTGGATGCTGTGAATGAAAAAGTCCTTTATCTTCAGCTTTGCATAAAAGCATATGAAGTATATTTCTATAATAATAAAGGAAAACTCCAGTACCTTTATTTTCAGCAAAATACCCTAATTAAGGTGAACGTTGTGAACCATTTTCTTTGCATAAAAACAAACTTGTTTGCTTGGAAATGTTTTATTTTATTCAAATCATAATGTGGATGTTGCTGAATATGATGATTATTAGCATCTTTCATGTGAATTCA</genome_strand>
        <mrna_strand>AAACGTGAATGGTATGATACCTGGTTGGATGCTGTGAATGAAAAAGTCCTTTATCTTCAGCTGTGCATAAAAGCATATGAAGTATATTTCTATAATAATAAAGGAAAACTCCAGTACCTTTATTTTCAGCAAAATACCCTAATTAAGGTTATCGTTGTGAACCATTTTCTTGGCATAAAAACAAACTTGTTTGCTTGAAAATGTTTTATTTTATTCAAATCATAATGTGGATGTTGCTGAATATGATGATTATTAGCATCTTTCATGTGAATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E553876" ref_strand="+" ref_description="SGN-E553876 [cTSC-2-I12]">
      <seq>caaacacattaggtccaccaggacacaaatgatgcttgaccagctttctgatcttcaaactaaggagaaattgtggaatgaggctaacaaggttcttgaaagaaagatggaagaaatatatgctgaaaacaacatgcaacaagcatggggtggtggtgagcaaagtctcaattatggtcagcagcaacatcctcaatctcagggtttcttccaacctctagagtgcaactcttccttgcaaattgggtacgatccaataacaacttcaagccaaataacagcagtaacaaatgcccaaaacgtgaatggtatgatacctggttggatgctgtgaatgaaaaagtcctttatcttcagctttgcataaaagcatatgaagtatatttctataataataaaggaaaactccagtacctttattttcagcaaaataccctaattaaggtgaacgttgtgaaccattttctttgcataaaaacaaacttgtttgcttggaaatgttttattttattcaaatcataatgtggatgttgctgaatatgatgattattagcatctttcatgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="71603" stop="69763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71303" g_stop="71282" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71281" i_stop="71204" i_length="78">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.604" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71203" g_stop="71162" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="64" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71161" i_stop="71084" i_length="78">
            <donor d_prob="0.943" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71083" g_stop="71042" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="106" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71041" i_stop="70742" i_length="300">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70741" g_stop="70602" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="246" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70601" i_stop="70384" i_length="218">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70383" g_stop="70063" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="567" r_length="321" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E553876" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553876" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71303" e_stop="71282"/>
          <exon e_start="71203" e_stop="71162"/>
          <exon e_start="71083" e_stop="71042"/>
          <exon e_start="70741" e_stop="70602"/>
          <exon e_start="70383" e_stop="70063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACACATTAGGTCCACCAGGGTAAGCTTAACTTATAACAAATTTTTAGACCAATTTCAATTCAAGTATTCTGATTGTTATCTTCTGGCTGCTCTATAGACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAGGTATTCTCATTTGATTCTAAAATGGTCAACATGATGCATGTGTTCAATAGTTAGTAACTTACTATTTTATCATAACAGGAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAGGTAGGTTGCCCATACATGTGATTCTAACTCATTTTCTAGCTCCATGTATATTACTAGTTGTATTGTGATTGATTTTTGTTAGATTAGGTTTATTTTTCGTCAATTTTTTTTTTTTTACCTAACTAAGTTGCTAAAGTAAAGTATTTCTGTTGAAGAGTCTCACATCGGCTCTTTTTAAGGAATGGGTATATGGGAAATTGTGAGCTAGTTTTTAGGGTTCAGTAATTATTAAGCCGAAGATCAATATTCCTTATTGATTGATGTACCAAAGTCATTGAATTGCATATAATTTGTTAGCAGATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGGGTAAATTCTACCATATTCATTCTATATATATCTTAATTTTTAATTTATCCTATCTATTTTACATCTGCCCATTAGTTCACAAGTGAGATTTTTTGAAAAAAAAAAGGAAGAAGCAAAACAAATATAGCTTTTCATACTCTAGAGATATCGATGAAAGTTATTCACACAATTAAAGTGCTTGGCTAAAACAAAAATGTTATTGTTTTGATTTAATGCAGGTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCCCAAAACGTGAATGGTATGATACCTGGTTGGATGCTGTGAATGAAAAAGTCCTTTATCTTCAGCTTTGCATAAAAGCATATGAAGTATATTTCTATAATAATAAAGGAAAACTCCAGTACCTTTATTTTCAGCAAAATACCCTAATTAAGGTGAACGTTGTGAACCATTTTCTTTGCATAAAAACAAACTTGTTTGCTTGGAAATGTTTTATTTTATTCAAATCATAATGTGGATGTTGCTGAATATGATGATTATTAGCATCTTTCATGTGA</genome_strand>
        <mrna_strand>CAAACACATTAGGTCCACCAGG..............................................................................ACACAAATGATGCTTGACCAGCTTTCTGATCTTCAAACTAAG..............................................................................GAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAG............................................................................................................................................................................................................................................................................................................ATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGG..........................................................................................................................................................................................................................GTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCCCAAAACGTGAATGGTATGATACCTGGTTGGATGCTGTGAATGAAAAAGTCCTTTATCTTCAGCTTTGCATAAAAGCATATGAAGTATATTTCTATAATAATAAAGGAAAACTCCAGTACCTTTATTTTCAGCAAAATACCCTAATTAAGGTGAACGTTGTGAACCATTTTCTTTGCATAAAAACAAACTTGTTTGCTTGGAAATGTTTTATTTTATTCAAATCATAATGTGGATGTTGCTGAATATGATGATTATTAGCATCTTTCATGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E554189" ref_strand="+" ref_description="SGN-E554189 [cTSC-3-I12]">
      <seq>acaaacacaattaagtccaaccaaagacacaaatgatagcttgaccaacatttctgatcttcaaacgtggggagaaattgtggaatgaggctaacaaggttcttgaaagaaagatggaagaaatatatgctgaaaacaacatgcaacaagcatggggtggtggtgagcaaagtctcaattatggtcagcagcaacatcctcaatctcagggtttcttccaacctctagagtgcaactcttccttgcaaattgggtacgatccaataacaacttcaagccaaataacagcagtaacaaatgcccaaaacgtgaatggtatgatacctggttggatgctgtgaatgaaaaagtcctttatcttcagctttgcataaaagcatatgaagtatatttctataataataaaggaaaactccagtacctttattttcagcaaaataccctaattaaggtgaacgttgtgaaccattttctttgcataaaaacaaacttgtttgcttggaaatgttttattttattcaaatcataatgtggatgttgctgaatatgatgattattagcatctttcatgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="71509" stop="69763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71203" g_stop="71162" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="71" r_length="45" r_score="0.762"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71161" i_stop="71084" i_length="78">
            <donor d_prob="0.943" d_score="0.76"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71083" g_stop="71042" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="113" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71041" i_stop="70742" i_length="300">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70741" g_stop="70602" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="253" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70601" i_stop="70384" i_length="218">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70383" g_stop="70063" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="574" r_length="321" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E554189" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554189" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71203" e_stop="71162"/>
          <exon e_start="71083" e_stop="71042"/>
          <exon e_start="70741" e_stop="70602"/>
          <exon e_start="70383" e_stop="70063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACAAATGAT-GCTTGATCAGC-TTTCTGATCTTCAAAC-TAAGGTATTCTCATTTGATTCTAAAATGGTCAACATGATGCATGTGTTCAATAGTTAGTAACTTACTATTTTATCATAACAGGAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAGGTAGGTTGCCCATACATGTGATTCTAACTCATTTTCTAGCTCCATGTATATTACTAGTTGTATTGTGATTGATTTTTGTTAGATTAGGTTTATTTTTCGTCAATTTTTTTTTTTTTACCTAACTAAGTTGCTAAAGTAAAGTATTTCTGTTGAAGAGTCTCACATCGGCTCTTTTTAAGGAATGGGTATATGGGAAATTGTGAGCTAGTTTTTAGGGTTCAGTAATTATTAAGCCGAAGATCAATATTCCTTATTGATTGATGTACCAAAGTCATTGAATTGCATATAATTTGTTAGCAGATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGGGTAAATTCTACCATATTCATTCTATATATATCTTAATTTTTAATTTATCCTATCTATTTTACATCTGCCCATTAGTTCACAAGTGAGATTTTTTGAAAAAAAAAAGGAAGAAGCAAAACAAATATAGCTTTTCATACTCTAGAGATATCGATGAAAGTTATTCACACAATTAAAGTGCTTGGCTAAAACAAAAATGTTATTGTTTTGATTTAATGCAGGTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCCCAAAACGTGAATGGTATGATACCTGGTTGGATGCTGTGAATGAAAAAGTCCTTTATCTTCAGCTTTGCATAAAAGCATATGAAGTATATTTCTATAATAATAAAGGAAAACTCCAGTACCTTTATTTTCAGCAAAATACCCTAATTAAGGTGAACGTTGTGAACCATTTTCTTTGCATAAAAACAAACTTGTTTGCTTGGAAATGTTTTATTTTATTCAAATCATAATGTGGATGTTGCTGAATATGATGATTATTAGCATCTTTCATGTGA</genome_strand>
        <mrna_strand>ACACAAATGATAGCTTGACCAACATTTCTGATCTTCAAACGTGGG..............................................................................GAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAG............................................................................................................................................................................................................................................................................................................ATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGG..........................................................................................................................................................................................................................GTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCCCAAAACGTGAATGGTATGATACCTGGTTGGATGCTGTGAATGAAAAAGTCCTTTATCTTCAGCTTTGCATAAAAGCATATGAAGTATATTTCTATAATAATAAAGGAAAACTCCAGTACCTTTATTTTCAGCAAAATACCCTAATTAAGGTGAACGTTGTGAACCATTTTCTTTGCATAAAAACAAACTTGTTTGCTTGGAAATGTTTTATTTTATTCAAATCATAATGTGGATGTTGCTGAATATGATGATTATTAGCATCTTTCATGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E219689" ref_strand="+" ref_description="SGN-E219689 [cLEL-24-E13](-)">
      <seq>ggcaccaggcaactcttccctgcaaattgggtacgatccaataacaacttcaagccaaataacagcagtaacaaatgcccaaaacgtgaatggtatgatacctggttggatgctgtgaatgaaaaagtcctttatcttcagctttgcataaaagcatatgaagtatatttctataataataaaggaaaactccagtacctttattttcagcaaaataccctaattaaggtgaacgttgtgaaccattttctttgcataaaaacaaacttgtttgcttggaaatgttttattttattcaaatcataatgtggatgttgctgaatatgatgattattagcatctttcatgtgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="70684" stop="69762"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70632" g_stop="70602" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.774"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70601" i_stop="70384" i_length="218">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70383" g_stop="70063" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="351" r_length="321" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="352" polyA_stop="368"/>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E219689" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E219689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70632" e_stop="70602"/>
          <exon e_start="70383" e_stop="70063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTAGAGTGCAACTCTTCCTTGCAAATTGGGTAAATTCTACCATATTCATTCTATATATATCTTAATTTTTAATTTATCCTATCTATTTTACATCTGCCCATTAGTTCACAAGTGAGATTTTTTGAAAAAAAAAAGGAAGAAGCAAAACAAATATAGCTTTTCATACTCTAGAGATATCGATGAAAGTTATTCACACAATTAAAGTGCTTGGCTAAAACAAAAATGTTATTGTTTTGATTTAATGCAGGTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCCCAAAACGTGAATGGTATGATACCTGGTTGGATGCTGTGAATGAAAAAGTCCTTTATCTTCAGCTTTGCATAAAAGCATATGAAGTATATTTCTATAATAATAAAGGAAAACTCCAGTACCTTTATTTTCAGCAAAATACCCTAATTAAGGTGAACGTTGTGAACCATTTTCTTTGCATAAAAACAAACTTGTTTGCTTGGAAATGTTTTATTTTATTCAAATCATAATGTGGATGTTGCTGAATATGATGATTATTAGCATCTTTCATGTGA</genome_strand>
        <mrna_strand>GGCACCAG-GCAACTCTTCCCTGCAAATTGG..........................................................................................................................................................................................................................GTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCCCAAAACGTGAATGGTATGATACCTGGTTGGATGCTGTGAATGAAAAAGTCCTTTATCTTCAGCTTTGCATAAAAGCATATGAAGTATATTTCTATAATAATAAAGGAAAACTCCAGTACCTTTATTTTCAGCAAAATACCCTAATTAAGGTGAACGTTGTGAACCATTTTCTTTGCATAAAAACAAACTTGTTTGCTTGGAAATGTTTTATTTTATTCAAATCATAATGTGGATGTTGCTGAATATGATGATTATTAGCATCTTTCATGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E220025" ref_strand="+" ref_description="SGN-E220025 [cLEL-24-E13](-)">
      <seq>ggcaccaggcaactcttccttgcaaattgggtacgatccaataacaacttcaagccaaataacagcagtaacaaatgcccaaaacgtgaatggtatgatacctggttggatgctgtgaatgaaaaagtcctttatcttcagctttgcataaaagcatatgaagtatatttctataataataaaggaaaactccagtacctttattttcagcaaaataccctaattaaggtgaacgttgtgaaccattttctttgcataaaaacaaacttgtttgcttggaaatgttttattttattcaaatcataatgtggatgttgctgaatatgatgattattagcatctttcatgtgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="70926" stop="69762"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70632" g_stop="70602" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.806"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70601" i_stop="70384" i_length="218">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70383" g_stop="70063" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="351" r_length="321" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="352" polyA_stop="368"/>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E220025" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E220025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70632" e_stop="70602"/>
          <exon e_start="70383" e_stop="70063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTAGAGTGCAACTCTTCCTTGCAAATTGGGTAAATTCTACCATATTCATTCTATATATATCTTAATTTTTAATTTATCCTATCTATTTTACATCTGCCCATTAGTTCACAAGTGAGATTTTTTGAAAAAAAAAAGGAAGAAGCAAAACAAATATAGCTTTTCATACTCTAGAGATATCGATGAAAGTTATTCACACAATTAAAGTGCTTGGCTAAAACAAAAATGTTATTGTTTTGATTTAATGCAGGTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCCCAAAACGTGAATGGTATGATACCTGGTTGGATGCTGTGAATGAAAAAGTCCTTTATCTTCAGCTTTGCATAAAAGCATATGAAGTATATTTCTATAATAATAAAGGAAAACTCCAGTACCTTTATTTTCAGCAAAATACCCTAATTAAGGTGAACGTTGTGAACCATTTTCTTTGCATAAAAACAAACTTGTTTGCTTGGAAATGTTTTATTTTATTCAAATCATAATGTGGATGTTGCTGAATATGATGATTATTAGCATCTTTCATGTGA</genome_strand>
        <mrna_strand>GGCACCAG-GCAACTCTTCCTTGCAAATTGG..........................................................................................................................................................................................................................GTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCCCAAAACGTGAATGGTATGATACCTGGTTGGATGCTGTGAATGAAAAAGTCCTTTATCTTCAGCTTTGCATAAAAGCATATGAAGTATATTTCTATAATAATAAAGGAAAACTCCAGTACCTTTATTTTCAGCAAAATACCCTAATTAAGGTGAACGTTGTGAACCATTTTCTTTGCATAAAAACAAACTTGTTTGCTTGGAAATGTTTTATTTTATTCAAATCATAATGTGGATGTTGCTGAATATGATGATTATTAGCATCTTTCATGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E556026" ref_strand="+" ref_description="SGN-E556026 [cTSD-2-C6]">
      <seq>caaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatataaaagacaccttcttggagatgagttggggcctctgactatagatgatcttgagcatcttgaagtccaactagatacttccctcaaacacattaggtccaccaggacacaaatgatgcttgatcagctttctgatcttcaaactaaggagaaattgtggaatgaggctaacaaggttcttgaaagaaagatggaagaaatatatgctgaaaacaacatgcaacaagcatggggtggtggtgagcaaagtctcaattatggtcagcagcaacatcctcaatctcagggtttcttccaacctctagagtgcaactcttccttgcaaattgggtacgatccaataacaacttcaagccaaataacagcagtaacaaatgcccaaaacgtgaatggtatgatacctggttggatgctgtgaatgaaaaagtcctttatcttcagctttgcataaaagcatatgaagtatatttctataataataaaggaaaactccagtacctttattttcagcaaaataccctaattaaggtgaacgttgtgaaccattttctttgcataaaaacaaacttgtttgcttggaaatgttttattttattcaaatcataatgtggatgttgctgaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="72932" stop="69790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72627" g_stop="72549" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="86" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72548" i_stop="72311" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72310" g_stop="72246" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="151" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72245" i_stop="71382" i_length="864">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71381" g_stop="71282" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="251" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71281" i_stop="71204" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71203" g_stop="71162" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="293" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71161" i_stop="71084" i_length="78">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71083" g_stop="71042" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="335" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71041" i_stop="70742" i_length="300">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70741" g_stop="70602" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="475" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="70601" i_stop="70384" i_length="218">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="70383" g_stop="70089" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="770" r_length="295" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E556026" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E556026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72627" e_stop="72549"/>
          <exon e_start="72310" e_stop="72246"/>
          <exon e_start="71381" e_stop="71282"/>
          <exon e_start="71203" e_stop="71162"/>
          <exon e_start="71083" e_stop="71042"/>
          <exon e_start="70741" e_stop="70602"/>
          <exon e_start="70383" e_stop="70089"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGGGTAAGCTTAACTTATAACAAATTTTTAGACCAATTTCAATTCAAGTATTCTGATTGTTATCTTCTGGCTGCTCTATAGACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAGGTATTCTCATTTGATTCTAAAATGGTCAACATGATGCATGTGTTCAATAGTTAGTAACTTACTATTTTATCATAACAGGAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAGGTAGGTTGCCCATACATGTGATTCTAACTCATTTTCTAGCTCCATGTATATTACTAGTTGTATTGTGATTGATTTTTGTTAGATTAGGTTTATTTTTCGTCAATTTTTTTTTTTTTACCTAACTAAGTTGCTAAAGTAAAGTATTTCTGTTGAAGAGTCTCACATCGGCTCTTTTTAAGGAATGGGTATATGGGAAATTGTGAGCTAGTTTTTAGGGTTCAGTAATTATTAAGCCGAAGATCAATATTCCTTATTGATTGATGTACCAAAGTCATTGAATTGCATATAATTTGTTAGCAGATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGGGTAAATTCTACCATATTCATTCTATATATATCTTAATTTTTAATTTATCCTATCTATTTTACATCTGCCCATTAGTTCACAAGTGAGATTTTTTGAAAAAAAAAAGGAAGAAGCAAAACAAATATAGCTTTTCATACTCTAGAGATATCGATGAAAGTTATTCACACAATTAAAGTGCTTGGCTAAAACAAAAATGTTATTGTTTTGATTTAATGCAGGTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCCCAAAACGTGAATGGTATGATACCTGGTTGGATGCTGTGAATGAAAAAGTCCTTTATCTTCAGCTTTGCATAAAAGCATATGAAGTATATTTCTATAATAATAAAGGAAAACTCCAGTACCTTTATTTTCAGCAAAATACCCTAATTAAGGTGAACGTTGTGAACCATTTTCTTTGCATAAAAACAAACTTGTTTGCTTGGAAATGTTTTATTTTATTCAAATCATAATGTGGATGTTGCTGAATAT</genome_strand>
        <mrna_strand>TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGG..............................................................................ACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAG..............................................................................GAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAG............................................................................................................................................................................................................................................................................................................ATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGG..........................................................................................................................................................................................................................GTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCCCAAAACGTGAATGGTATGATACCTGGTTGGATGCTGTGAATGAAAAAGTCCTTTATCTTCAGCTTTGCATAAAAGCATATGAAGTATATTTCTATAATAATAAAGGAAAACTCCAGTACCTTTATTTTCAGCAAAATACCCTAATTAAGGTGAACGTTGTGAACCATTTTCTTTGCATAAAAACAAACTTGTTTGCTTGGAAATGTTTTATTTTATTCAAATCATAATGTGGATGTTGCTGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E552517" ref_strand="+" ref_description="SGN-E552517 [cTSB-4-C6]">
      <seq>caaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatataaaagacaccttcttggagatgagttggggcctctgactatagatgatcttgagcatcttgaagtccaactagatacttccctcaaacacattaggtccaccaggacacaaatgatgcttgatcagctttctgatcttcaaactaaggagaaattgtggaatgaggctaacaaggttcttgaaagaaagatggaagaaatatatgctgaaaacaacatgcaacaagcatggggtggtggtgagcaaagtctcaattatggtcagcagcaacatcctcaatctcagggtttcttccaacctctagagtgcaactcttccttgcaaattgggtacgatccaataacaacttcaagccaaataacagcagtaacaaatgcccaaaacgtgaatggtatgatacctggttggatgctgtgaatgaaaaagtcctttatcttcagctttgcataaaagcatatgaagtatatttctataataataaaggaaaactccagtacctttattttcagcaaaataccctaattaaggtgaacgttgtgaaccattttctttgcataaaaacaaacttgtttgcttggaaatgttttattttattcaaatcataatgtggatgttgctgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="72932" stop="69790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72627" g_stop="72549" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="86" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72548" i_stop="72311" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72310" g_stop="72246" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="151" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72245" i_stop="71382" i_length="864">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71381" g_stop="71282" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="251" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71281" i_stop="71204" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71203" g_stop="71162" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="293" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71161" i_stop="71084" i_length="78">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71083" g_stop="71042" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="335" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71041" i_stop="70742" i_length="300">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70741" g_stop="70602" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="475" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="70601" i_stop="70384" i_length="218">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="70383" g_stop="70090" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="769" r_length="294" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E552517" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E552517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72627" e_stop="72549"/>
          <exon e_start="72310" e_stop="72246"/>
          <exon e_start="71381" e_stop="71282"/>
          <exon e_start="71203" e_stop="71162"/>
          <exon e_start="71083" e_stop="71042"/>
          <exon e_start="70741" e_stop="70602"/>
          <exon e_start="70383" e_stop="70090"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGGGTAAGCTTAACTTATAACAAATTTTTAGACCAATTTCAATTCAAGTATTCTGATTGTTATCTTCTGGCTGCTCTATAGACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAGGTATTCTCATTTGATTCTAAAATGGTCAACATGATGCATGTGTTCAATAGTTAGTAACTTACTATTTTATCATAACAGGAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAGGTAGGTTGCCCATACATGTGATTCTAACTCATTTTCTAGCTCCATGTATATTACTAGTTGTATTGTGATTGATTTTTGTTAGATTAGGTTTATTTTTCGTCAATTTTTTTTTTTTTACCTAACTAAGTTGCTAAAGTAAAGTATTTCTGTTGAAGAGTCTCACATCGGCTCTTTTTAAGGAATGGGTATATGGGAAATTGTGAGCTAGTTTTTAGGGTTCAGTAATTATTAAGCCGAAGATCAATATTCCTTATTGATTGATGTACCAAAGTCATTGAATTGCATATAATTTGTTAGCAGATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGGGTAAATTCTACCATATTCATTCTATATATATCTTAATTTTTAATTTATCCTATCTATTTTACATCTGCCCATTAGTTCACAAGTGAGATTTTTTGAAAAAAAAAAGGAAGAAGCAAAACAAATATAGCTTTTCATACTCTAGAGATATCGATGAAAGTTATTCACACAATTAAAGTGCTTGGCTAAAACAAAAATGTTATTGTTTTGATTTAATGCAGGTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCCCAAAACGTGAATGGTATGATACCTGGTTGGATGCTGTGAATGAAAAAGTCCTTTATCTTCAGCTTTGCATAAAAGCATATGAAGTATATTTCTATAATAATAAAGGAAAACTCCAGTACCTTTATTTTCAGCAAAATACCCTAATTAAGGTGAACGTTGTGAACCATTTTCTTTGCATAAAAACAAACTTGTTTGCTTGGAAATGTTTTATTTTATTCAAATCATAATGTGGATGTTGCTGAATA</genome_strand>
        <mrna_strand>TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGG..............................................................................ACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAG..............................................................................GAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAG............................................................................................................................................................................................................................................................................................................ATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGG..........................................................................................................................................................................................................................GTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCCCAAAACGTGAATGGTATGATACCTGGTTGGATGCTGTGAATGAAAAAGTCCTTTATCTTCAGCTTTGCATAAAAGCATATGAAGTATATTTCTATAATAATAAAGGAAAACTCCAGTACCTTTATTTTCAGCAAAATACCCTAATTAAGGTGAACGTTGTGAACCATTTTCTTTGCATAAAAACAAACTTGTTTGCTTGGAAATGTTTTATTTTATTCAAATCATAATGTGGATGTTGCTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E746752" ref_strand="+" ref_description="SGN-E746752 [GI|24967142]">
      <seq>ctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctctgtgatgctgaagttgctctactcgttttctccaatcgtggaaaactctatgaattctgcagcacgagcaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggggcctctgactatagatgatcttgagcatcttgaagtccaactagatacttccctcaaacacattaggtccaccaggacacaaatgatgcttgatcagctttctgatcttcaaactaaggagaaattgtggaatgaggctaacaaggttcttgaaagaaagatggaagaaatatatgctgaaaacaacatgcaacaagcatggggtggtggtgagcaaagtctcaattatggtcagcagcaacatcctcaatctcagggtttcttccaacctctagagtgcaactcttccttgcaaattgggtacgatccaataacaacttcaagccaaataacagcagtaacaaatgcccaaaacgtgaatggtatgatacctggttggatgctgtgaatgaaaaagtcctctattttcagctttgcataaaagcatatgaagtatatttctataataataaaggaaaactccagtacctttattttcagcaaaataccctaattaaggtgaacgttgtgaaccattttctttgcataaaaacaaacttgtttgcttggaaatgttttattttattcaaatcataatgtggatgatgatgaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="74691" stop="69790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74391" g_stop="74096" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74095" i_stop="72628" i_length="1468">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72627" g_stop="72549" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="375" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72548" i_stop="72311" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72310" g_stop="72246" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="440" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72245" i_stop="71382" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71381" g_stop="71282" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="540" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71281" i_stop="71204" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71203" g_stop="71162" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="582" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71161" i_stop="71084" i_length="78">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71083" g_stop="71042" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="624" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="71041" i_stop="70742" i_length="300">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="70741" g_stop="70602" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="625" r_stop="764" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="70601" i_stop="70384" i_length="218">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="70383" g_stop="70093" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="765" r_stop="1055" r_length="291" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1056" polyA_stop="1081"/>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E746752" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>1055</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746752" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74391" e_stop="74096"/>
          <exon e_start="72627" e_stop="72549"/>
          <exon e_start="72310" e_stop="72246"/>
          <exon e_start="71381" e_stop="71282"/>
          <exon e_start="71203" e_stop="71162"/>
          <exon e_start="71083" e_stop="71042"/>
          <exon e_start="70741" e_stop="70602"/>
          <exon e_start="70383" e_stop="70093"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGGGTAAGCTTAACTTATAACAAATTTTTAGACCAATTTCAATTCAAGTATTCTGATTGTTATCTTCTGGCTGCTCTATAGACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAGGTATTCTCATTTGATTCTAAAATGGTCAACATGATGCATGTGTTCAATAGTTAGTAACTTACTATTTTATCATAACAGGAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAGGTAGGTTGCCCATACATGTGATTCTAACTCATTTTCTAGCTCCATGTATATTACTAGTTGTATTGTGATTGATTTTTGTTAGATTAGGTTTATTTTTCGTCAATTTTTTTTTTTTTACCTAACTAAGTTGCTAAAGTAAAGTATTTCTGTTGAAGAGTCTCACATCGGCTCTTTTTAAGGAATGGGTATATGGGAAATTGTGAGCTAGTTTTTAGGGTTCAGTAATTATTAAGCCGAAGATCAATATTCCTTATTGATTGATGTACCAAAGTCATTGAATTGCATATAATTTGTTAGCAGATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGGGTAAATTCTACCATATTCATTCTATATATATCTTAATTTTTAATTTATCCTATCTATTTTACATCTGCCCATTAGTTCACAAGTGAGATTTTTTGAAAAAAAAAAGGAAGAAGCAAAACAAATATAGCTTTTCATACTCTAGAGATATCGATGAAAGTTATTCACACAATTAAAGTGCTTGGCTAAAACAAAAATGTTATTGTTTTGATTTAATGCAGGTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCCCAAAACGTGAATGGTATGATACCTGGTTGGATGCTGTGAATGAAAAAGTCCTTTATCTTCAGCTTTGCATAAAAGCATATGAAGTATATTTCTATAATAATAAAGGAAAACTCCAGTACCTTTATTTTCAGCAAAATACCCTAATTAAGGTGAACGTTGTGAACCATTTTCTTTGCATAAAAACAAACTTGTTTGCTTGGAAATGTTTTATTTTATTCAAATCATAATGTGGATGTTGCTGA</genome_strand>
        <mrna_strand>CTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTCTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCCAATCGTGGAAAACTCTATGAATTCTGCAGCACGAGCAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGG..............................................................................ACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAG..............................................................................GAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAG............................................................................................................................................................................................................................................................................................................ATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGG..........................................................................................................................................................................................................................GTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCCCAAAACGTGAATGGTATGATACCTGGTTGGATGCTGTGAATGAAAAAGTCCTCTATTTTCAGCTTTGCATAAAAGCATATGAAGTATATTTCTATAATAATAAAGGAAAACTCCAGTACCTTTATTTTCAGCAAAATACCCTAATTAAGGTGAACGTTGTGAACCATTTTCTTTGCATAAAAACAAACTTGTTTGCTTGGAAATGTTTTATTTTATTCAAATCATAATGTGGATGATGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E555046" ref_strand="+" ref_description="SGN-E555046 [cTSC-6-D9]">
      <seq>caaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggggcctctgactatagatgatcttgagcatcttgaagtccaactagatacttccctcaaacacattaggtccaccaggacacaaatgatgcttgatcagctttctgatcttcaaactaaggagaaattgtggaatgaggctaacaaggttcttgaaagaaagatggaagaaatatatgctgaaaacaacatgcaacaagcatggggtggtggtgagcaaagtctcaattatggtcagcagcaacatcctcaatctcagggtttcttccaacctctagagtgcaactcttccttgcaaattgggtacgatccaataacaacttcaagccaaataacagcagtaacaaatgcccaaaacgtgaatggtatgatacctggttggatgctgtgaatgaaaaagtcctttatcttcagctttgcataaaagcatatgaagtatatttctataataataaaggaaaactccagtacctttattttcagcaaaataccctaattaaggtgaacgttgtgaaccattttctttgcataaaaacaaacttgtttgcttggaaatgttttattttattcaaatcataatgtggatgttgctgannaaaanaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="72932" stop="69793"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72627" g_stop="72549" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="86" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72548" i_stop="72311" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72310" g_stop="72246" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="151" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72245" i_stop="71382" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71381" g_stop="71282" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="251" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71281" i_stop="71204" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71203" g_stop="71162" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="293" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71161" i_stop="71084" i_length="78">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71083" g_stop="71042" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="335" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71041" i_stop="70742" i_length="300">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70741" g_stop="70602" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="475" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="70601" i_stop="70384" i_length="218">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="70383" g_stop="70093" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="766" r_length="291" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="769" polyA_stop="787"/>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E555046" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72627" e_stop="72549"/>
          <exon e_start="72310" e_stop="72246"/>
          <exon e_start="71381" e_stop="71282"/>
          <exon e_start="71203" e_stop="71162"/>
          <exon e_start="71083" e_stop="71042"/>
          <exon e_start="70741" e_stop="70602"/>
          <exon e_start="70383" e_stop="70093"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGGGTAAGCTTAACTTATAACAAATTTTTAGACCAATTTCAATTCAAGTATTCTGATTGTTATCTTCTGGCTGCTCTATAGACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAGGTATTCTCATTTGATTCTAAAATGGTCAACATGATGCATGTGTTCAATAGTTAGTAACTTACTATTTTATCATAACAGGAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAGGTAGGTTGCCCATACATGTGATTCTAACTCATTTTCTAGCTCCATGTATATTACTAGTTGTATTGTGATTGATTTTTGTTAGATTAGGTTTATTTTTCGTCAATTTTTTTTTTTTTACCTAACTAAGTTGCTAAAGTAAAGTATTTCTGTTGAAGAGTCTCACATCGGCTCTTTTTAAGGAATGGGTATATGGGAAATTGTGAGCTAGTTTTTAGGGTTCAGTAATTATTAAGCCGAAGATCAATATTCCTTATTGATTGATGTACCAAAGTCATTGAATTGCATATAATTTGTTAGCAGATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGGGTAAATTCTACCATATTCATTCTATATATATCTTAATTTTTAATTTATCCTATCTATTTTACATCTGCCCATTAGTTCACAAGTGAGATTTTTTGAAAAAAAAAAGGAAGAAGCAAAACAAATATAGCTTTTCATACTCTAGAGATATCGATGAAAGTTATTCACACAATTAAAGTGCTTGGCTAAAACAAAAATGTTATTGTTTTGATTTAATGCAGGTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCCCAAAACGTGAATGGTATGATACCTGGTTGGATGCTGTGAATGAAAAAGTCCTTTATCTTCAGCTTTGCATAAAAGCATATGAAGTATATTTCTATAATAATAAAGGAAAACTCCAGTACCTTTATTTTCAGCAAAATACCCTAATTAAGGTGAACGTTGTGAACCATTTTCTTTGCATAAAAACAAACTTGTTTGCTTGGAAATGTTTTATTTTATTCAAATCATAATGTGGATGTTGCTGA</genome_strand>
        <mrna_strand>TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGG..............................................................................ACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAG..............................................................................GAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAG............................................................................................................................................................................................................................................................................................................ATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGG..........................................................................................................................................................................................................................GTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCCCAAAACGTGAATGGTATGATACCTGGTTGGATGCTGTGAATGAAAAAGTCCTTTATCTTCAGCTTTGCATAAAAGCATATGAAGTATATTTCTATAATAATAAAGGAAAACTCCAGTACCTTTATTTTCAGCAAAATACCCTAATTAAGGTGAACGTTGTGAACCATTTTCTTTGCATAAAAACAAACTTGTTTGCTTGGAAATGTTTTATTTTATTCAAATCATAATGTGGATGTTGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E557053" ref_strand="+" ref_description="SGN-E557053 [cTSD-3-D22]">
      <seq>caaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggggcctctgactatagatgatcttgagcatcttgaagtccaactagatacttccctcaaacacattaggtccaccaggacacaaatgatgcttgatcagctttctgatcttcaaactaaggagaaattgtggaatgaggctaacaaggttcttgaaagaaagatggaagaaatatatgctgaaaacaacatgcaacaagcatggggtggtggtgagcaaagtctcaattatggtcagcagcaacatcctcaatctcagggtttcttccaacctctagagtgcaactcttccttgcaaattgggtacgatccaataacaacttcaagccaaataacagcagtaacaaatgcccaaaacgtgaatggtatgatacctggttggatgctgtgaatgaaaaagtcctttatcttcagctttgcataaaagcatatgaagtatatttctataataataaaggaaaactccagtacctttattttcagcaaaataccctaattaaggtgaacgttgtgaaccattttctttgcataaaaacaaacttgtttgcttggaaatgttttattttattcaaatcataatgtggatgttgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="72932" stop="69793"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72627" g_stop="72549" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="86" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72548" i_stop="72311" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72310" g_stop="72246" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="151" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72245" i_stop="71382" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71381" g_stop="71282" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="251" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71281" i_stop="71204" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71203" g_stop="71162" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="293" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71161" i_stop="71084" i_length="78">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71083" g_stop="71042" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="335" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71041" i_stop="70742" i_length="300">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70741" g_stop="70602" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="475" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="70601" i_stop="70384" i_length="218">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="70383" g_stop="70093" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="766" r_length="291" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E557053" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E557053" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72627" e_stop="72549"/>
          <exon e_start="72310" e_stop="72246"/>
          <exon e_start="71381" e_stop="71282"/>
          <exon e_start="71203" e_stop="71162"/>
          <exon e_start="71083" e_stop="71042"/>
          <exon e_start="70741" e_stop="70602"/>
          <exon e_start="70383" e_stop="70093"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGGGTAAGCTTAACTTATAACAAATTTTTAGACCAATTTCAATTCAAGTATTCTGATTGTTATCTTCTGGCTGCTCTATAGACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAGGTATTCTCATTTGATTCTAAAATGGTCAACATGATGCATGTGTTCAATAGTTAGTAACTTACTATTTTATCATAACAGGAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAGGTAGGTTGCCCATACATGTGATTCTAACTCATTTTCTAGCTCCATGTATATTACTAGTTGTATTGTGATTGATTTTTGTTAGATTAGGTTTATTTTTCGTCAATTTTTTTTTTTTTACCTAACTAAGTTGCTAAAGTAAAGTATTTCTGTTGAAGAGTCTCACATCGGCTCTTTTTAAGGAATGGGTATATGGGAAATTGTGAGCTAGTTTTTAGGGTTCAGTAATTATTAAGCCGAAGATCAATATTCCTTATTGATTGATGTACCAAAGTCATTGAATTGCATATAATTTGTTAGCAGATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGGGTAAATTCTACCATATTCATTCTATATATATCTTAATTTTTAATTTATCCTATCTATTTTACATCTGCCCATTAGTTCACAAGTGAGATTTTTTGAAAAAAAAAAGGAAGAAGCAAAACAAATATAGCTTTTCATACTCTAGAGATATCGATGAAAGTTATTCACACAATTAAAGTGCTTGGCTAAAACAAAAATGTTATTGTTTTGATTTAATGCAGGTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCCCAAAACGTGAATGGTATGATACCTGGTTGGATGCTGTGAATGAAAAAGTCCTTTATCTTCAGCTTTGCATAAAAGCATATGAAGTATATTTCTATAATAATAAAGGAAAACTCCAGTACCTTTATTTTCAGCAAAATACCCTAATTAAGGTGAACGTTGTGAACCATTTTCTTTGCATAAAAACAAACTTGTTTGCTTGGAAATGTTTTATTTTATTCAAATCATAATGTGGATGTTGCTGA</genome_strand>
        <mrna_strand>TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGG..............................................................................ACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAG..............................................................................GAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAG............................................................................................................................................................................................................................................................................................................ATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGG..........................................................................................................................................................................................................................GTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCCCAAAACGTGAATGGTATGATACCTGGTTGGATGCTGTGAATGAAAAAGTCCTTTATCTTCAGCTTTGCATAAAAGCATATGAAGTATATTTCTATAATAATAAAGGAAAACTCCAGTACCTTTATTTTCAGCAAAATACCCTAATTAAGGTGAACGTTGTGAACCATTTTCTTTGCATAAAAACAAACTTGTTTGCTTGGAAATGTTTTATTTTATTCAAATCATAATGTGGATGTTGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E744728" ref_strand="+" ref_description="SGN-E744728 [GI|17432173]">
      <seq>ctaaagttaaaacaatgaatccctaaagaagataggaagaaatgccatagataaaaacaacccatgttcactttttctctctctaaacattgaaattcaaccaaaacaaaaaacaaaagttgataagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggggcctctgactatagatgatcttgagcatcttgaagtccaactagatacttccctcaaacacattaggtccaccaggacacaaatgatgcttgatcagctttctgatcttcaaactaaggagaaattgtggaatgaggctaacaaggttcttgaaagaaagatggaagaaatatatgctgaaaacaacatgcaacaagcatggggtggtggtgagcaaagtctcaattatggtcagcagcaacatcctcaatctcagggtttcttccaacctctagagtgcaactcttccttgcaaattgggtacgatccaataacaacttcaagccaaataacagcagtaacaaatgcccaaaacgtgaatggtatgatacctggttggatgctgtgaatgaaaaagtcctttatcttcagctttgcataaaagcatatgaagtatatttctataataataaaggaaaactccagtacctttattttcagcaaaataccctaattaaggtgaacgttgtgaaccattttctttgcataaaaacaaacttgtttgcttggaaatgttttattttattcaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="74871" stop="69808"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74571" g_stop="74096" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74095" i_stop="72628" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72627" g_stop="72549" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="555" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72548" i_stop="72311" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72310" g_stop="72246" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="620" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72245" i_stop="71382" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71381" g_stop="71282" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="720" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71281" i_stop="71204" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71203" g_stop="71162" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="721" r_stop="762" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71161" i_stop="71084" i_length="78">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71083" g_stop="71042" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="763" r_stop="804" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="71041" i_stop="70742" i_length="300">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="70741" g_stop="70602" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="805" r_stop="944" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="70601" i_stop="70384" i_length="218">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="70383" g_stop="70115" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="945" r_stop="1213" r_length="269" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1214" polyA_stop="1231"/>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E744728" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1213</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E744728" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74571" e_stop="74096"/>
          <exon e_start="72627" e_stop="72549"/>
          <exon e_start="72310" e_stop="72246"/>
          <exon e_start="71381" e_stop="71282"/>
          <exon e_start="71203" e_stop="71162"/>
          <exon e_start="71083" e_stop="71042"/>
          <exon e_start="70741" e_stop="70602"/>
          <exon e_start="70383" e_stop="70115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAAGTTAAAACAATGAATCCCTAAAGAAGATAGGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGGGTAAGCTTAACTTATAACAAATTTTTAGACCAATTTCAATTCAAGTATTCTGATTGTTATCTTCTGGCTGCTCTATAGACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAGGTATTCTCATTTGATTCTAAAATGGTCAACATGATGCATGTGTTCAATAGTTAGTAACTTACTATTTTATCATAACAGGAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAGGTAGGTTGCCCATACATGTGATTCTAACTCATTTTCTAGCTCCATGTATATTACTAGTTGTATTGTGATTGATTTTTGTTAGATTAGGTTTATTTTTCGTCAATTTTTTTTTTTTTACCTAACTAAGTTGCTAAAGTAAAGTATTTCTGTTGAAGAGTCTCACATCGGCTCTTTTTAAGGAATGGGTATATGGGAAATTGTGAGCTAGTTTTTAGGGTTCAGTAATTATTAAGCCGAAGATCAATATTCCTTATTGATTGATGTACCAAAGTCATTGAATTGCATATAATTTGTTAGCAGATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGGGTAAATTCTACCATATTCATTCTATATATATCTTAATTTTTAATTTATCCTATCTATTTTACATCTGCCCATTAGTTCACAAGTGAGATTTTTTGAAAAAAAAAAGGAAGAAGCAAAACAAATATAGCTTTTCATACTCTAGAGATATCGATGAAAGTTATTCACACAATTAAAGTGCTTGGCTAAAACAAAAATGTTATTGTTTTGATTTAATGCAGGTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCCCAAAACGTGAATGGTATGATACCTGGTTGGATGCTGTGAATGAAAAAGTCCTTTATCTTCAGCTTTGCATAAAAGCATATGAAGTATATTTCTATAATAATAAAGGAAAACTCCAGTACCTTTATTTTCAGCAAAATACCCTAATTAAGGTGAACGTTGTGAACCATTTTCTTTGCATAAAAACAAACTTGTTTGCTTGGAAATGTTTTATTTTATTCAA</genome_strand>
        <mrna_strand>CTAAAGTTAAAACAATGAATCCCTAAAGAAGATAGGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGG..............................................................................ACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAG..............................................................................GAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAG............................................................................................................................................................................................................................................................................................................ATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGG..........................................................................................................................................................................................................................GTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCCCAAAACGTGAATGGTATGATACCTGGTTGGATGCTGTGAATGAAAAAGTCCTTTATCTTCAGCTTTGCATAAAAGCATATGAAGTATATTTCTATAATAATAAAGGAAAACTCCAGTACCTTTATTTTCAGCAAAATACCCTAATTAAGGTGAACGTTGTGAACCATTTTCTTTGCATAAAAACAAACTTGTTTGCTTGGAAATGTTTTATTTTATTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E708385" ref_strand="+" ref_description="SGN-E708385 [FA35CE03]">
      <seq>ccaatgatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggggcctctgactatagatgatcttgagcatcttgaagtccaactagatacttccctcaaacacattaggtccaccaggacacaaatgatgcttgatcagctttctgatcttcaaactaaggagaaattgtggaatgaggctaacaaggttcttgaaagaaagatggaagaaatatatgctgaaaacaacatgcaacaagcatggggtggtggtgagcaaagtctcaattatggtcagcagcaacatcctcaatctcagggtttcttccaacctctagagtgcaactcttccttgcaaattgggtacgatccaataacaacttcaagccaaataacagcagtaacaaatgcccaaaacgtgaatggtatgatacctggttggatgctgtgaatgaaaaagtcctttatcttcagctttgcataaaagcatatgaagtatatttctataataataaaggaaaactccagtacctttattttcagcaaaataccctaattaaggtgaacgttgtgaaccattttctttgcataaaaacaaactttgttgctggaaatgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="74603" stop="69827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74305" g_stop="74096" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74095" i_stop="72628" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72627" g_stop="72549" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="289" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72548" i_stop="72311" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72310" g_stop="72246" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="354" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72245" i_stop="71382" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71381" g_stop="71282" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="454" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71281" i_stop="71204" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71203" g_stop="71162" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="496" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71161" i_stop="71084" i_length="78">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71083" g_stop="71042" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="538" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="71041" i_stop="70742" i_length="300">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="70741" g_stop="70602" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="678" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="70601" i_stop="70384" i_length="218">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="70383" g_stop="70127" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="679" r_stop="934" r_length="256" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E708385" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>935</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708385" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74305" e_stop="74096"/>
          <exon e_start="72627" e_stop="72549"/>
          <exon e_start="72310" e_stop="72246"/>
          <exon e_start="71381" e_stop="71282"/>
          <exon e_start="71203" e_stop="71162"/>
          <exon e_start="71083" e_stop="71042"/>
          <exon e_start="70741" e_stop="70602"/>
          <exon e_start="70383" e_stop="70127"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGGGTAAGCTTAACTTATAACAAATTTTTAGACCAATTTCAATTCAAGTATTCTGATTGTTATCTTCTGGCTGCTCTATAGACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAGGTATTCTCATTTGATTCTAAAATGGTCAACATGATGCATGTGTTCAATAGTTAGTAACTTACTATTTTATCATAACAGGAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAGGTAGGTTGCCCATACATGTGATTCTAACTCATTTTCTAGCTCCATGTATATTACTAGTTGTATTGTGATTGATTTTTGTTAGATTAGGTTTATTTTTCGTCAATTTTTTTTTTTTTACCTAACTAAGTTGCTAAAGTAAAGTATTTCTGTTGAAGAGTCTCACATCGGCTCTTTTTAAGGAATGGGTATATGGGAAATTGTGAGCTAGTTTTTAGGGTTCAGTAATTATTAAGCCGAAGATCAATATTCCTTATTGATTGATGTACCAAAGTCATTGAATTGCATATAATTTGTTAGCAGATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGGGTAAATTCTACCATATTCATTCTATATATATCTTAATTTTTAATTTATCCTATCTATTTTACATCTGCCCATTAGTTCACAAGTGAGATTTTTTGAAAAAAAAAAGGAAGAAGCAAAACAAATATAGCTTTTCATACTCTAGAGATATCGATGAAAGTTATTCACACAATTAAAGTGCTTGGCTAAAACAAAAATGTTATTGTTTTGATTTAATGCAGGTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCCCAAAACGTGAATGGTATGATACCTGGTTGGATGCTGTGAATGAAAAAGTCCTTTATCTTCAGCTTTGCATAAAAGCATATGAAGTATATTTCTATAATAATAAAGGAAAACTCCAGTACCTTTATTTTCAGCAAAATACCCTAATTAAGGTGAACGTTGTGAACCATTTTCTTTGCATAAAAACAAACTTGTTTGCTTGGAAATGTTT</genome_strand>
        <mrna_strand>CCAATGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGG..............................................................................ACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAG..............................................................................GAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAG............................................................................................................................................................................................................................................................................................................ATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGG..........................................................................................................................................................................................................................GTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCCCAAAACGTGAATGGTATGATACCTGGTTGGATGCTGTGAATGAAAAAGTCCTTTATCTTCAGCTTTGCATAAAAGCATATGAAGTATATTTCTATAATAATAAAGGAAAACTCCAGTACCTTTATTTTCAGCAAAATACCCTAATTAAGGTGAACGTTGTGAACCATTTTCTTTGCATAAAAACAAACTTTGTTGC-TGGAAATGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E253482" ref_strand="+" ref_description="SGN-E253482 [cLEG-24-C19]">
      <seq>cagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggggcctctgactatagatgatcttgagcatcttgaagtccaactagatacttccctcaaacacattaggtccaccaggacacaaatgatgcttgatcagctttctgatcttcaaactaaggagaaattgtggaatgaggctaacaaggttcttgaaagaaagcagatggaagaaatatatgctgaaaacaacatgcaacaagcatggggtggtggtgagcaaagtctcaattatggtcagcagcaacatcctcaatctcagggtttcttccaacctctagagtgcaactcttccttgcaaattgggtacgatccaataacaacttcaagccaaataacagcagtaacaaatgcccaaaacgtgaatggtatgatacctggttggatgctgtgaatgaaaaagtcctttatcttcagctttgcataaaagcatatgaagtatatttctataataataaaggaaaactccagtacctttattttcagcaaaataccctaattaaggtgaacgttgtgaaccattttctttgcataaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="72605" stop="69853"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72305" g_stop="72246" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72245" i_stop="71382" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71381" g_stop="71282" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="160" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71281" i_stop="71204" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71203" g_stop="71162" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="202" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71161" i_stop="71084" i_length="78">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71083" g_stop="71042" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="244" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71041" i_stop="70745" i_length="297">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.885" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70744" g_stop="70602" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="387" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="70601" i_stop="70384" i_length="218">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70383" g_stop="70153" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="618" r_length="231" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E253482" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253482" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72305" e_stop="72246"/>
          <exon e_start="71381" e_stop="71282"/>
          <exon e_start="71203" e_stop="71162"/>
          <exon e_start="71083" e_stop="71042"/>
          <exon e_start="70744" e_stop="70602"/>
          <exon e_start="70383" e_stop="70153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGGGTAAGCTTAACTTATAACAAATTTTTAGACCAATTTCAATTCAAGTATTCTGATTGTTATCTTCTGGCTGCTCTATAGACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAGGTATTCTCATTTGATTCTAAAATGGTCAACATGATGCATGTGTTCAATAGTTAGTAACTTACTATTTTATCATAACAGGAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAGGTAGGTTGCCCATACATGTGATTCTAACTCATTTTCTAGCTCCATGTATATTACTAGTTGTATTGTGATTGATTTTTGTTAGATTAGGTTTATTTTTCGTCAATTTTTTTTTTTTTACCTAACTAAGTTGCTAAAGTAAAGTATTTCTGTTGAAGAGTCTCACATCGGCTCTTTTTAAGGAATGGGTATATGGGAAATTGTGAGCTAGTTTTTAGGGTTCAGTAATTATTAAGCCGAAGATCAATATTCCTTATTGATTGATGTACCAAAGTCATTGAATTGCATATAATTTGTTAGCAGATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGGGTAAATTCTACCATATTCATTCTATATATATCTTAATTTTTAATTTATCCTATCTATTTTACATCTGCCCATTAGTTCACAAGTGAGATTTTTTGAAAAAAAAAAGGAAGAAGCAAAACAAATATAGCTTTTCATACTCTAGAGATATCGATGAAAGTTATTCACACAATTAAAGTGCTTGGCTAAAACAAAAATGTTATTGTTTTGATTTAATGCAGGTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCCCAAAACGTGAATGGTATGATACCTGGTTGGATGCTGTGAATGAAAAAGTCCTTTATCTTCAGCTTTGCATAAAAGCATATGAAGTATATTTCTATAATAATAAAGGAAAACTCCAGTACCTTTATTTTCAGCAAAATACCCTAATTAAGGTGAACGTTGTGAACCATTTTCTTTGCATAAAA</genome_strand>
        <mrna_strand>CAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGG..............................................................................ACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAG..............................................................................GAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAG.........................................................................................................................................................................................................................................................................................................CAGATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGG..........................................................................................................................................................................................................................GTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCCCAAAACGTGAATGGTATGATACCTGGTTGGATGCTGTGAATGAAAAAGTCCTTTATCTTCAGCTTTGCATAAAAGCATATGAAGTATATTTCTATAATAATAAAGGAAAACTCCAGTACCTTTATTTTCAGCAAAATACCCTAATTAAGGTGAACGTTGTGAACCATTTTCTTTGCATAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E242786" ref_strand="+" ref_description="SGN-E242786 [cLED-31-D21]">
      <seq>aagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggggcctctgactatagatgatcttgagcatcttgaagtccaactagatacttccctcaaacacattaggtccaccaggacacaaatgatgcttgatcagctttctgatcttcaaactaaggagaaattgtggaatgaggctaacaaggttcttgaaagaaagatggaagaaatatatgctgaaaacaacatgcaacaagcatggggtggtggtgagcaaagtctcaattatggtcagcagcaacatcctcaatctcagggtttcttccaacctctagagtgcaactcttccttgcaaattgggtacgatccaataacaacttcaagccaaataacagcagtaacaaatgcccaaaacgtgaatggtatgatacctggttggatgctgtgaatgaaaaagtcctttatcttcagctttgcataaaagcatatgaagtatatttctataataataaaggaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="72877" stop="69924"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72577" g_stop="72549" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72548" i_stop="72311" i_length="238">
            <donor d_prob="0.840" d_score="0.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72310" g_stop="72246" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="94" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72245" i_stop="71382" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71381" g_stop="71282" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="194" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71281" i_stop="71204" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71203" g_stop="71162" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="236" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71161" i_stop="71084" i_length="78">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71083" g_stop="71042" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="278" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71041" i_stop="70742" i_length="300">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70741" g_stop="70602" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="418" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="70601" i_stop="70384" i_length="218">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="70383" g_stop="70224" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="578" r_length="160" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E242786" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72577" e_stop="72549"/>
          <exon e_start="72310" e_stop="72246"/>
          <exon e_start="71381" e_stop="71282"/>
          <exon e_start="71203" e_stop="71162"/>
          <exon e_start="71083" e_stop="71042"/>
          <exon e_start="70741" e_stop="70602"/>
          <exon e_start="70383" e_stop="70224"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGGGTAAGCTTAACTTATAACAAATTTTTAGACCAATTTCAATTCAAGTATTCTGATTGTTATCTTCTGGCTGCTCTATAGACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAGGTATTCTCATTTGATTCTAAAATGGTCAACATGATGCATGTGTTCAATAGTTAGTAACTTACTATTTTATCATAACAGGAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAGGTAGGTTGCCCATACATGTGATTCTAACTCATTTTCTAGCTCCATGTATATTACTAGTTGTATTGTGATTGATTTTTGTTAGATTAGGTTTATTTTTCGTCAATTTTTTTTTTTTTACCTAACTAAGTTGCTAAAGTAAAGTATTTCTGTTGAAGAGTCTCACATCGGCTCTTTTTAAGGAATGGGTATATGGGAAATTGTGAGCTAGTTTTTAGGGTTCAGTAATTATTAAGCCGAAGATCAATATTCCTTATTGATTGATGTACCAAAGTCATTGAATTGCATATAATTTGTTAGCAGATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGGGTAAATTCTACCATATTCATTCTATATATATCTTAATTTTTAATTTATCCTATCTATTTTACATCTGCCCATTAGTTCACAAGTGAGATTTTTTGAAAAAAAAAAGGAAGAAGCAAAACAAATATAGCTTTTCATACTCTAGAGATATCGATGAAAGTTATTCACACAATTAAAGTGCTTGGCTAAAACAAAAATGTTATTGTTTTGATTTAATGCAGGTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCCCAAAACGTGAATGGTATGATACCTGGTTGGATGCTGTGAATGAAAAAGTCCTTTATCTTCAGCTTTGCATAAAAGCATATGAAGTATATTTCTATAATAATAAAGGAAAAC</genome_strand>
        <mrna_strand>AAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGG..............................................................................ACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAG..............................................................................GAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAG............................................................................................................................................................................................................................................................................................................ATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGG..........................................................................................................................................................................................................................GTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCCCAAAACGTGAATGGTATGATACCTGGTTGGATGCTGTGAATGAAAAAGTCCTTTATCTTCAGCTTTGCATAAAAGCATATGAAGTATATTTCTATAATAATAAAGGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E747498" ref_strand="+" ref_description="SGN-E747498 [GI|32478028]">
      <seq>catgaaatgtcgntgctgtgcgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggggcctctgactatagatgatcttgagcatcttgaagtccaactagatacttccctcaaacacattaggtccaccaggacacaaatgatgcttgatcagctttctgatcttcaaactaaggagaaattgtggaatgaggctaacaaggttcttgaaagaaagatggaagaaatatatgctgaaaacaacatgcaacaagcatggggtggtggtgagcaaagtctcaattatggtcagcagcaacatcctcaatctcagggtttcttccaacctctagagtgcaactcttccttgcaaattgggtacgatccaataacaacttcaagccaaataacagcagtaacaaatgcccaaaacgtgaatggtatgatacctggttggatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="74483" stop="69999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74184" g_stop="74096" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74095" i_stop="72628" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72627" g_stop="72549" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="168" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72548" i_stop="72311" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72310" g_stop="72246" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="233" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72245" i_stop="71382" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71381" g_stop="71282" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="333" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71281" i_stop="71204" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71203" g_stop="71162" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="375" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71161" i_stop="71084" i_length="78">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71083" g_stop="71042" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="417" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="71041" i_stop="70742" i_length="300">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="70741" g_stop="70602" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="557" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="70601" i_stop="70384" i_length="218">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="70383" g_stop="70299" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="642" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E747498" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747498" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74184" e_stop="74096"/>
          <exon e_start="72627" e_stop="72549"/>
          <exon e_start="72310" e_stop="72246"/>
          <exon e_start="71381" e_stop="71282"/>
          <exon e_start="71203" e_stop="71162"/>
          <exon e_start="71083" e_stop="71042"/>
          <exon e_start="70741" e_stop="70602"/>
          <exon e_start="70383" e_stop="70299"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGGGTAAGCTTAACTTATAACAAATTTTTAGACCAATTTCAATTCAAGTATTCTGATTGTTATCTTCTGGCTGCTCTATAGACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAGGTATTCTCATTTGATTCTAAAATGGTCAACATGATGCATGTGTTCAATAGTTAGTAACTTACTATTTTATCATAACAGGAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAGGTAGGTTGCCCATACATGTGATTCTAACTCATTTTCTAGCTCCATGTATATTACTAGTTGTATTGTGATTGATTTTTGTTAGATTAGGTTTATTTTTCGTCAATTTTTTTTTTTTTACCTAACTAAGTTGCTAAAGTAAAGTATTTCTGTTGAAGAGTCTCACATCGGCTCTTTTTAAGGAATGGGTATATGGGAAATTGTGAGCTAGTTTTTAGGGTTCAGTAATTATTAAGCCGAAGATCAATATTCCTTATTGATTGATGTACCAAAGTCATTGAATTGCATATAATTTGTTAGCAGATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGGGTAAATTCTACCATATTCATTCTATATATATCTTAATTTTTAATTTATCCTATCTATTTTACATCTGCCCATTAGTTCACAAGTGAGATTTTTTGAAAAAAAAAAGGAAGAAGCAAAACAAATATAGCTTTTCATACTCTAGAGATATCGATGAAAGTTATTCACACAATTAAAGTGCTTGGCTAAAACAAAAATGTTATTGTTTTGATTTAATGCAGGTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCCCAAAACGTGAATGGTATGATACCTGGTTGGATGCTG</genome_strand>
        <mrna_strand>CATGAAATGTCGRTGCTGTGCGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGG..............................................................................ACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAG..............................................................................GAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAG............................................................................................................................................................................................................................................................................................................ATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGG..........................................................................................................................................................................................................................GTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCCCAAAACGTGAATGGTATGATACCTGGTTGGATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E697641" ref_strand="+" ref_description="SGN-E697641 [FA03CG02]">
      <seq>acgacgctagggtttgcatttctttccaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggggcctctgactatagatgatcttgagcatcttgaagtccaactagatacttccctcaaacacattaggtccaccaggacacaaatgatgcttgatcagctttctgatcttcaaactaaggagaaattgtggaatgaggctaacaaggttcttgaaagaaagcagatggaagaaatatatgctgaaaacaacatgcaacaagcatggggtggtggtgagcaaagtctcaattatggtcagcagcaacatcctcaatctcagggtttcttccaacctctagagtgcaactcttccttgcaaattgggtacgatccaataacaacttcaagccaaataacagcagtaacaaatgcccaaaacgtgaatggtatgatacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="74710" stop="70012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74406" g_stop="74096" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="316" r_length="310" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74095" i_stop="72628" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72627" g_stop="72549" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="395" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72548" i_stop="72311" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72310" g_stop="72246" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="460" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72245" i_stop="71382" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71381" g_stop="71282" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="560" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71281" i_stop="71204" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71203" g_stop="71162" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="602" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71161" i_stop="71084" i_length="78">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71083" g_stop="71042" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="644" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="71041" i_stop="70745" i_length="297">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.885" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="70744" g_stop="70602" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="787" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="70601" i_stop="70384" i_length="218">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="70383" g_stop="70312" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="788" r_stop="859" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E697641" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>854</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74406" e_stop="74096"/>
          <exon e_start="72627" e_stop="72549"/>
          <exon e_start="72310" e_stop="72246"/>
          <exon e_start="71381" e_stop="71282"/>
          <exon e_start="71203" e_stop="71162"/>
          <exon e_start="71083" e_stop="71042"/>
          <exon e_start="70744" e_stop="70602"/>
          <exon e_start="70383" e_stop="70312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGGGTAAGCTTAACTTATAACAAATTTTTAGACCAATTTCAATTCAAGTATTCTGATTGTTATCTTCTGGCTGCTCTATAGACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAGGTATTCTCATTTGATTCTAAAATGGTCAACATGATGCATGTGTTCAATAGTTAGTAACTTACTATTTTATCATAACAGGAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAGGTAGGTTGCCCATACATGTGATTCTAACTCATTTTCTAGCTCCATGTATATTACTAGTTGTATTGTGATTGATTTTTGTTAGATTAGGTTTATTTTTCGTCAATTTTTTTTTTTTTACCTAACTAAGTTGCTAAAGTAAAGTATTTCTGTTGAAGAGTCTCACATCGGCTCTTTTTAAGGAATGGGTATATGGGAAATTGTGAGCTAGTTTTTAGGGTTCAGTAATTATTAAGCCGAAGATCAATATTCCTTATTGATTGATGTACCAAAGTCATTGAATTGCATATAATTTGTTAGCAGATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGGGTAAATTCTACCATATTCATTCTATATATATCTTAATTTTTAATTTATCCTATCTATTTTACATCTGCCCATTAGTTCACAAGTGAGATTTTTTGAAAAAAAAAAGGAAGAAGCAAAACAAATATAGCTTTTCATACTCTAGAGATATCGATGAAAGTTATTCACACAATTAAAGTGCTTGGCTAAAACAAAAATGTTATTGTTTTGATTTAATGCAGGTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCCCAAAACGTGAATGGTATGATACC</genome_strand>
        <mrna_strand>CTAGGGTTTGCATTTCTTTC-CAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGG..............................................................................ACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAG..............................................................................GAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAG.........................................................................................................................................................................................................................................................................................................CAGATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGG..........................................................................................................................................................................................................................GTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCCCAAAACGTGAATGGTATGATACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E705941" ref_strand="+" ref_description="SGN-E705941 [FA28CC07]">
      <seq>ttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggggcctctgactatagatgatcttgagcatcttgaagtccaactagatacttccctcaaacacattaggtccaccaggacacaaatgatgcttgatcagctttctgatcttcaaactaaggagaaattgtggaatgaggctaacaaggttcttgaaagaaagatggaagaaatatatgctgaaaacaacatgcaacaagcatggggtggtggtgagcaaagtctcaattatggtcagcagcaacatcctcaatctcagggtttcttccaacctctaaagtgcaactcttccttgcaaattgggtacgatccaataacaacttcaagccaaataacagcagtaccaaatgcccaaaacgtgaatggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="74693" stop="70020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74393" g_stop="74096" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74095" i_stop="72628" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72627" g_stop="72549" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="377" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72548" i_stop="72311" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72310" g_stop="72246" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="442" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72245" i_stop="71382" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71381" g_stop="71282" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="542" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71281" i_stop="71204" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71203" g_stop="71162" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="584" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71161" i_stop="71084" i_length="78">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71083" g_stop="71042" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="626" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="71041" i_stop="70742" i_length="300">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="70741" g_stop="70602" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="766" r_length="140" r_score="0.993"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="70601" i_stop="70384" i_length="218">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="70383" g_stop="70320" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="767" r_stop="830" r_length="64" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E705941" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>830</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705941" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74393" e_stop="74096"/>
          <exon e_start="72627" e_stop="72549"/>
          <exon e_start="72310" e_stop="72246"/>
          <exon e_start="71381" e_stop="71282"/>
          <exon e_start="71203" e_stop="71162"/>
          <exon e_start="71083" e_stop="71042"/>
          <exon e_start="70741" e_stop="70602"/>
          <exon e_start="70383" e_stop="70320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGGGTAAGCTTAACTTATAACAAATTTTTAGACCAATTTCAATTCAAGTATTCTGATTGTTATCTTCTGGCTGCTCTATAGACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAGGTATTCTCATTTGATTCTAAAATGGTCAACATGATGCATGTGTTCAATAGTTAGTAACTTACTATTTTATCATAACAGGAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAGGTAGGTTGCCCATACATGTGATTCTAACTCATTTTCTAGCTCCATGTATATTACTAGTTGTATTGTGATTGATTTTTGTTAGATTAGGTTTATTTTTCGTCAATTTTTTTTTTTTTACCTAACTAAGTTGCTAAAGTAAAGTATTTCTGTTGAAGAGTCTCACATCGGCTCTTTTTAAGGAATGGGTATATGGGAAATTGTGAGCTAGTTTTTAGGGTTCAGTAATTATTAAGCCGAAGATCAATATTCCTTATTGATTGATGTACCAAAGTCATTGAATTGCATATAATTTGTTAGCAGATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGGGTAAATTCTACCATATTCATTCTATATATATCTTAATTTTTAATTTATCCTATCTATTTTACATCTGCCCATTAGTTCACAAGTGAGATTTTTTGAAAAAAAAAAGGAAGAAGCAAAACAAATATAGCTTTTCATACTCTAGAGATATCGATGAAAGTTATTCACACAATTAAAGTGCTTGGCTAAAACAAAAATGTTATTGTTTTGATTTAATGCAGGTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCCCAAAACGTGAATGGT</genome_strand>
        <mrna_strand>TTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGG..............................................................................ACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAG..............................................................................GAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAG............................................................................................................................................................................................................................................................................................................ATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAAAGTGCAACTCTTCCTTGCAAATTGG..........................................................................................................................................................................................................................GTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTACCAAATGCCCAAAACGTGAATGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E703495" ref_strand="+" ref_description="SGN-E703495 [FA21CF09]">
      <seq>aattcaaccaaaacaaaaaacaaaagttgataagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggggcctctgactatagatgatcttgagcatcttgaagtccaactagatacttccctcaaacacattaggtccaccaggacacaaatgatgcttgatcagctttctgatcttcaaactaaggagaaattgtggaatgaggctaacaaggttcttgaaagaaagatggaagaaatatatgctgaaaacaacatgcaacaagcatggggtggtggtgagcaaagtctcaattatggtcagcagcaacatcctcaatctcaggntttcttccaacctctagaagtgcactcttccttgcaaattgggtacgatccaataacaacttcaagccaaataacagcagtaacaaatgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="74778" stop="70035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74478" g_stop="74096" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="383" r_length="383" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74095" i_stop="72628" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72627" g_stop="72549" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="462" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72548" i_stop="72311" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72310" g_stop="72246" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="527" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72245" i_stop="71382" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71381" g_stop="71282" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="627" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71281" i_stop="71204" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71203" g_stop="71162" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="669" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71161" i_stop="71084" i_length="78">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71083" g_stop="71042" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="670" r_stop="711" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="71041" i_stop="70742" i_length="300">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="70741" g_stop="70602" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="712" r_stop="851" r_length="140" r_score="0.971"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="70601" i_stop="70384" i_length="218">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="70383" g_stop="70335" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="852" r_stop="900" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E703495" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>900</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74478" e_stop="74096"/>
          <exon e_start="72627" e_stop="72549"/>
          <exon e_start="72310" e_stop="72246"/>
          <exon e_start="71381" e_stop="71282"/>
          <exon e_start="71203" e_stop="71162"/>
          <exon e_start="71083" e_stop="71042"/>
          <exon e_start="70741" e_stop="70602"/>
          <exon e_start="70383" e_stop="70335"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGGGTAAGCTTAACTTATAACAAATTTTTAGACCAATTTCAATTCAAGTATTCTGATTGTTATCTTCTGGCTGCTCTATAGACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAGGTATTCTCATTTGATTCTAAAATGGTCAACATGATGCATGTGTTCAATAGTTAGTAACTTACTATTTTATCATAACAGGAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAGGTAGGTTGCCCATACATGTGATTCTAACTCATTTTCTAGCTCCATGTATATTACTAGTTGTATTGTGATTGATTTTTGTTAGATTAGGTTTATTTTTCGTCAATTTTTTTTTTTTTACCTAACTAAGTTGCTAAAGTAAAGTATTTCTGTTGAAGAGTCTCACATCGGCTCTTTTTAAGGAATGGGTATATGGGAAATTGTGAGCTAGTTTTTAGGGTTCAGTAATTATTAAGCCGAAGATCAATATTCCTTATTGATTGATGTACCAAAGTCATTGAATTGCATATAATTTGTTAGCAGATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAG-AGTGCAACTCTTCCTTGCAAATTGGGTAAATTCTACCATATTCATTCTATATATATCTTAATTTTTAATTTATCCTATCTATTTTACATCTGCCCATTAGTTCACAAGTGAGATTTTTTGAAAAAAAAAAGGAAGAAGCAAAACAAATATAGCTTTTCATACTCTAGAGATATCGATGAAAGTTATTCACACAATTAAAGTGCTTGGCTAAAACAAAAATGTTATTGTTTTGATTTAATGCAGGTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCC</genome_strand>
        <mrna_strand>AATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGG..............................................................................ACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAG..............................................................................GAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAG............................................................................................................................................................................................................................................................................................................ATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGNTTTCTTCCAACCTCTAGAAGTGC-ACTCTTCCTTGCAAATTGG..........................................................................................................................................................................................................................GTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E262928" ref_strand="+" ref_description="SGN-E262928 [cLEG-59-F6]">
      <seq>aaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggggcctctgactatagatgatcttgagcatcttgaagtccaactagatacttccctcaaacacattaggtccaccaggacacaaatgatgcttgatcagctttctgatcttcaaactaaggagaaattgtggaatgaggctaacaaggttcttgaaagaaagatggaagaaatatatgctgaaaacaacatgcaaaagcatggggggtggtggtgagcaaagtctcaattatggtcagcagcaacatcctcaatctcagggtttcttccaacctctagagtgcaactcttccttgcaaattgggtacgatccaataacaacttcaagccaaataacagcagtaacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="74612" stop="70040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74312" g_stop="74096" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74095" i_stop="72628" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72627" g_stop="72549" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="296" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72548" i_stop="72311" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72310" g_stop="72246" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="361" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72245" i_stop="71382" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71381" g_stop="71282" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="461" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71281" i_stop="71204" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71203" g_stop="71162" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="503" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71161" i_stop="71084" i_length="78">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71083" g_stop="71042" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="545" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="71041" i_stop="70742" i_length="300">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="70741" g_stop="70602" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="686" r_length="141" r_score="0.964"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="70601" i_stop="70384" i_length="218">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="70383" g_stop="70339" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="687" r_stop="731" r_length="45" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E262928" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262928" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74312" e_stop="74096"/>
          <exon e_start="72627" e_stop="72549"/>
          <exon e_start="72310" e_stop="72246"/>
          <exon e_start="71381" e_stop="71282"/>
          <exon e_start="71203" e_stop="71162"/>
          <exon e_start="71083" e_stop="71042"/>
          <exon e_start="70741" e_stop="70602"/>
          <exon e_start="70383" e_stop="70339"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGGGTAAGCTTAACTTATAACAAATTTTTAGACCAATTTCAATTCAAGTATTCTGATTGTTATCTTCTGGCTGCTCTATAGACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAGGTATTCTCATTTGATTCTAAAATGGTCAACATGATGCATGTGTTCAATAGTTAGTAACTTACTATTTTATCATAACAGGAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAGGTAGGTTGCCCATACATGTGATTCTAACTCATTTTCTAGCTCCATGTATATTACTAGTTGTATTGTGATTGATTTTTGTTAGATTAGGTTTATTTTTCGTCAATTTTTTTTTTTTTACCTAACTAAGTTGCTAAAGTAAAGTATTTCTGTTGAAGAGTCTCACATCGGCTCTTTTTAAGGAATGGGTATATGGGAAATTGTGAGCTAGTTTTTAGGGTTCAGTAATTATTAAGCCGAAGATCAATATTCCTTATTGATTGATGTACCAAAGTCATTGAATTGCATATAATTTGTTAGCAGATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCAT--GGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGGGTAAATTCTACCATATTCATTCTATATATATCTTAATTTTTAATTTATCCTATCTATTTTACATCTGCCCATTAGTTCACAAGTGAGATTTTTTGAAAAAAAAAAGGAAGAAGCAAAACAAATATAGCTTTTCATACTCTAGAGATATCGATGAAAGTTATTCACACAATTAAAGTGCTTGGCTAAAACAAAAATGTTATTGTTTTGATTTAATGCAGGTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAA</genome_strand>
        <mrna_strand>AAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGG..............................................................................ACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAG..............................................................................GAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAG............................................................................................................................................................................................................................................................................................................ATGGAAGAAATATATGCTGAAAACAACATGCAA-AAGCATGGGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGG..........................................................................................................................................................................................................................GTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E707488" ref_strand="+" ref_description="SGN-E707488 [FA33AF05]">
      <seq>ccctatgttcactttttctctctctaaacattgaaattcaaccaaaacaaaaaacaaaagttgataagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggggcctctgactatagatgatcttgagcatcttgaagtccaactagatacttccctcaaacacattaggtccaccaggacacaaatgatgcttgatcagctttctgatcttcaaactaaggagaaattgtggaatgaggctaacaaggttcttgaaagaaagatggaagaaatatatgctgaaaacaacatgcaacaagcatggggtggtggtgagcaaagtctcaattatggtcagcagcaacatcctcaatctcagggtttcttccaacctctagagtgcaactcttccttgcaaattgggtacgatccaataacaacttcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="74811" stop="70061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74512" g_stop="74096" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="417" r_length="417" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74095" i_stop="72628" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72627" g_stop="72549" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="496" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72548" i_stop="72311" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72310" g_stop="72246" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="561" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72245" i_stop="71382" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71381" g_stop="71282" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="661" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71281" i_stop="71204" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71203" g_stop="71162" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="662" r_stop="703" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71161" i_stop="71084" i_length="78">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71083" g_stop="71042" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="704" r_stop="745" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="71041" i_stop="70742" i_length="300">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="70741" g_stop="70602" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="746" r_stop="885" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="70601" i_stop="70384" i_length="218">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="70383" g_stop="70361" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="886" r_stop="908" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E707488" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>908</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707488" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74512" e_stop="74096"/>
          <exon e_start="72627" e_stop="72549"/>
          <exon e_start="72310" e_stop="72246"/>
          <exon e_start="71381" e_stop="71282"/>
          <exon e_start="71203" e_stop="71162"/>
          <exon e_start="71083" e_stop="71042"/>
          <exon e_start="70741" e_stop="70602"/>
          <exon e_start="70383" e_stop="70361"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGGGTAAGCTTAACTTATAACAAATTTTTAGACCAATTTCAATTCAAGTATTCTGATTGTTATCTTCTGGCTGCTCTATAGACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAGGTATTCTCATTTGATTCTAAAATGGTCAACATGATGCATGTGTTCAATAGTTAGTAACTTACTATTTTATCATAACAGGAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAGGTAGGTTGCCCATACATGTGATTCTAACTCATTTTCTAGCTCCATGTATATTACTAGTTGTATTGTGATTGATTTTTGTTAGATTAGGTTTATTTTTCGTCAATTTTTTTTTTTTTACCTAACTAAGTTGCTAAAGTAAAGTATTTCTGTTGAAGAGTCTCACATCGGCTCTTTTTAAGGAATGGGTATATGGGAAATTGTGAGCTAGTTTTTAGGGTTCAGTAATTATTAAGCCGAAGATCAATATTCCTTATTGATTGATGTACCAAAGTCATTGAATTGCATATAATTTGTTAGCAGATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGGGTAAATTCTACCATATTCATTCTATATATATCTTAATTTTTAATTTATCCTATCTATTTTACATCTGCCCATTAGTTCACAAGTGAGATTTTTTGAAAAAAAAAAGGAAGAAGCAAAACAAATATAGCTTTTCATACTCTAGAGATATCGATGAAAGTTATTCACACAATTAAAGTGCTTGGCTAAAACAAAAATGTTATTGTTTTGATTTAATGCAGGTACGATCCAATAACAACTTCAA</genome_strand>
        <mrna_strand>CCCTATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGG..............................................................................ACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAG..............................................................................GAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAG............................................................................................................................................................................................................................................................................................................ATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGG..........................................................................................................................................................................................................................GTACGATCCAATAACAACTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E704409" ref_strand="+" ref_description="SGN-E704409 [FA24AH03]">
      <seq>aaaaaacaaaagttgataagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggggcctctgactatagatgatcttgagcatcttgaagtccaactagatacttccctcaaacacattaggtccaccaggacacaaatgatgcttgatcagctttctgatcttcaaactaaggagaaattgtggaatgaggctaacaaggttcttganagaaagatggaagaaatatatgctgaaaacaacatgcaacaagcatggggtggtggtgagcaaagtctncattatggtcagcagcaacatcctcaatctcagggtttcttccaacctctagagtggcactcttccttgcaaattgggtacgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="74764" stop="70299"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74464" g_stop="74096" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74095" i_stop="72628" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72627" g_stop="72549" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="448" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72548" i_stop="72311" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72310" g_stop="72246" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="513" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72245" i_stop="71382" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71381" g_stop="71282" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="613" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71281" i_stop="71204" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71203" g_stop="71162" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="655" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71161" i_stop="71084" i_length="78">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71083" g_stop="71042" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="656" r_stop="697" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="71041" i_stop="70742" i_length="300">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="70741" g_stop="70602" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="698" r_stop="837" r_length="140" r_score="0.971"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="70601" i_stop="70384" i_length="218">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="70383" g_stop="70377" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="838" r_stop="844" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E704409" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>844</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704409" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74464" e_stop="74096"/>
          <exon e_start="72627" e_stop="72549"/>
          <exon e_start="72310" e_stop="72246"/>
          <exon e_start="71381" e_stop="71282"/>
          <exon e_start="71203" e_stop="71162"/>
          <exon e_start="71083" e_stop="71042"/>
          <exon e_start="70741" e_stop="70602"/>
          <exon e_start="70383" e_stop="70377"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGGGTAAGCTTAACTTATAACAAATTTTTAGACCAATTTCAATTCAAGTATTCTGATTGTTATCTTCTGGCTGCTCTATAGACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAGGTATTCTCATTTGATTCTAAAATGGTCAACATGATGCATGTGTTCAATAGTTAGTAACTTACTATTTTATCATAACAGGAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAGGTAGGTTGCCCATACATGTGATTCTAACTCATTTTCTAGCTCCATGTATATTACTAGTTGTATTGTGATTGATTTTTGTTAGATTAGGTTTATTTTTCGTCAATTTTTTTTTTTTTACCTAACTAAGTTGCTAAAGTAAAGTATTTCTGTTGAAGAGTCTCACATCGGCTCTTTTTAAGGAATGGGTATATGGGAAATTGTGAGCTAGTTTTTAGGGTTCAGTAATTATTAAGCCGAAGATCAATATTCCTTATTGATTGATGTACCAAAGTCATTGAATTGCATATAATTTGTTAGCAGATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGGGTAAATTCTACCATATTCATTCTATATATATCTTAATTTTTAATTTATCCTATCTATTTTACATCTGCCCATTAGTTCACAAGTGAGATTTTTTGAAAAAAAAAAGGAAGAAGCAAAACAAATATAGCTTTTCATACTCTAGAGATATCGATGAAAGTTATTCACACAATTAAAGTGCTTGGCTAAAACAAAAATGTTATTGTTTTGATTTAATGCAGGTACGAT</genome_strand>
        <mrna_strand>AAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGG..............................................................................ACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAG..............................................................................GAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGANAGAAAG............................................................................................................................................................................................................................................................................................................ATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTNCATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGGCACTCTTCCTTGCAAATTGG..........................................................................................................................................................................................................................GTACGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E220254" ref_strand="+" ref_description="SGN-E220254 [cLEL-12-C17](-)">
      <seq>agcagcttagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttgagatgagttggggcctctgactatagatgatcttgagcatcttgaagtccaactagatacttccctcaaacacattaggtccaccaggacacaaatgatgcttgatcagctttctgatcttcaaactaaggagaaattgtggaatgaggctaacaaggttcttgaaagaaagatggaagaaatatatgctgaaaacaacatgcaacaagcatggggtggtggtgagcaaagtctcaattatggtcagcagcaacatcctcaatctcagggtttcttccaacctctagagtgcaactcttccttgcaaattgggtaaattctaccatattcattctatatatatcttaatttttaatttatcctatctattttacatctgcccattagttcacaagtgagattttttgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="72607" stop="70190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72307" g_stop="72246" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72245" i_stop="71382" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71381" g_stop="71282" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="160" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71281" i_stop="71204" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71203" g_stop="71162" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="202" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71161" i_stop="71084" i_length="78">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71083" g_stop="71042" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="244" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71041" i_stop="70742" i_length="300">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70741" g_stop="70490" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="496" r_length="252" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E220254" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E220254" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72307" e_stop="72246"/>
          <exon e_start="71381" e_stop="71282"/>
          <exon e_start="71203" e_stop="71162"/>
          <exon e_start="71083" e_stop="71042"/>
          <exon e_start="70741" e_stop="70490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGGGTAAGCTTAACTTATAACAAATTTTTAGACCAATTTCAATTCAAGTATTCTGATTGTTATCTTCTGGCTGCTCTATAGACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAGGTATTCTCATTTGATTCTAAAATGGTCAACATGATGCATGTGTTCAATAGTTAGTAACTTACTATTTTATCATAACAGGAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAGGTAGGTTGCCCATACATGTGATTCTAACTCATTTTCTAGCTCCATGTATATTACTAGTTGTATTGTGATTGATTTTTGTTAGATTAGGTTTATTTTTCGTCAATTTTTTTTTTTTTACCTAACTAAGTTGCTAAAGTAAAGTATTTCTGTTGAAGAGTCTCACATCGGCTCTTTTTAAGGAATGGGTATATGGGAAATTGTGAGCTAGTTTTTAGGGTTCAGTAATTATTAAGCCGAAGATCAATATTCCTTATTGATTGATGTACCAAAGTCATTGAATTGCATATAATTTGTTAGCAGATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGGGTAAATTCTACCATATTCATTCTATATATATCTTAATTTTTAATTTATCCTATCTATTTTACATCTGCCCATTAGTTCACAAGTGAGATTTTTTGAAAAAAAAAAGGAAGAA</genome_strand>
        <mrna_strand>AGCAGCT-TAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTG-AGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGG..............................................................................ACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAG..............................................................................GAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAG............................................................................................................................................................................................................................................................................................................ATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGGGTAAATTCTACCATATTCATTCTATATATATCTTAATTTTTAATTTATCCTATCTATTTTACATCTGCCCATTAGTTCACAAGTGAGATTTTTTGAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E220164" ref_strand="+" ref_description="SGN-E220164 [cLEL-12-C17](-)">
      <seq>aaagtctcaattatggtcagcagcaacatcctcaatcacagggtttcttccaacctctagagtgcaactcttccttgcaaattgggtaaattctaccatattcattctatatatatcttaatttttaatttatcctatctattttacatctgcccattagttcacaagtgagattttttgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="70986" stop="70190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70686" g_stop="70490" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E220164" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>197</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E220164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70686" e_stop="70490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGGGTAAATTCTACCATATTCATTCTATATATATCTTAATTTTTAATTTATCCTATCTATTTTACATCTGCCCATTAGTTCACAAGTGAGATTTTTTGAAAAAAAAAAGGAAGAA</genome_strand>
        <mrna_strand>AAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCACAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGGGTAAATTCTACCATATTCATTCTATATATATCTTAATTTTTAATTTATCCTATCTATTTTACATCTGCCCATTAGTTCACAAGTGAGATTTTTTGAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E707966" ref_strand="+" ref_description="SGN-E707966 [FA34BH04]">
      <seq>cccttgttcactttttctctctctaaacattgaaattcaaccaaaacaaaaaacaaaagttgataagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggggcctctgactatagatgatcttgagcatcttgaagtccaactagatacttccctcaaacacattaggtccaccaggacacaaatgatgcttgatcagctttctgatcttcaaactaaggagaaattgtggaatgaggctaacaaggttcttgaaagaaagatggaagaaatatatgctgaaaacaacatgcaacaagcatggggtggtggtgagcaaagtctcaattatggtcagcagcaacatcctcaatctcagggtttcttccaacctctagagtgcaactcttccttgcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="74811" stop="70306"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74511" g_stop="74096" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74095" i_stop="72628" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72627" g_stop="72549" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="495" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72548" i_stop="72311" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72310" g_stop="72246" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="560" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72245" i_stop="71382" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71381" g_stop="71282" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="660" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71281" i_stop="71204" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71203" g_stop="71162" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="661" r_stop="702" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71161" i_stop="71084" i_length="78">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71083" g_stop="71042" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="703" r_stop="744" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="71041" i_stop="70742" i_length="300">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="70741" g_stop="70606" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="745" r_stop="880" r_length="136" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E707966" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>880</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707966" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74511" e_stop="74096"/>
          <exon e_start="72627" e_stop="72549"/>
          <exon e_start="72310" e_stop="72246"/>
          <exon e_start="71381" e_stop="71282"/>
          <exon e_start="71203" e_stop="71162"/>
          <exon e_start="71083" e_stop="71042"/>
          <exon e_start="70741" e_stop="70606"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGGGTAAGCTTAACTTATAACAAATTTTTAGACCAATTTCAATTCAAGTATTCTGATTGTTATCTTCTGGCTGCTCTATAGACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAGGTATTCTCATTTGATTCTAAAATGGTCAACATGATGCATGTGTTCAATAGTTAGTAACTTACTATTTTATCATAACAGGAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAGGTAGGTTGCCCATACATGTGATTCTAACTCATTTTCTAGCTCCATGTATATTACTAGTTGTATTGTGATTGATTTTTGTTAGATTAGGTTTATTTTTCGTCAATTTTTTTTTTTTTACCTAACTAAGTTGCTAAAGTAAAGTATTTCTGTTGAAGAGTCTCACATCGGCTCTTTTTAAGGAATGGGTATATGGGAAATTGTGAGCTAGTTTTTAGGGTTCAGTAATTATTAAGCCGAAGATCAATATTCCTTATTGATTGATGTACCAAAGTCATTGAATTGCATATAATTTGTTAGCAGATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAA</genome_strand>
        <mrna_strand>CCCTTGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGG..............................................................................ACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAG..............................................................................GAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAG............................................................................................................................................................................................................................................................................................................ATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E708100" ref_strand="+" ref_description="SGN-E708100 [FA34DD09]">
      <seq>caataacaacccatgttcactttttctctctctaaacattgaaattcaaccaaaacaaaaaacaaaagttgataagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggggcctctgactatagatgatcttgagcatcttgaagtccaactagatacttccctcaaacacattaggtccaccaggacacaaatgatgcttgatcagctttctgatcttcaaactaaggagaaattgtggaatgaggctaacaaggttcttgaaagaaagatggaagaaatatatgctgaaaacaacatgcaacaagcatggggtggtggtgagcaaagtctcaattatggtcagcagcaacatcctcaatctcagggtttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="74819" stop="70339"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74520" g_stop="74096" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74095" i_stop="72628" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72627" g_stop="72549" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="504" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72548" i_stop="72311" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72310" g_stop="72246" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="569" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72245" i_stop="71382" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71381" g_stop="71282" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="669" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71281" i_stop="71204" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71203" g_stop="71162" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="670" r_stop="711" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71161" i_stop="71084" i_length="78">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71083" g_stop="71042" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="712" r_stop="753" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="71041" i_stop="70742" i_length="300">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="70741" g_stop="70639" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="754" r_stop="856" r_length="103" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E708100" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>856</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74520" e_stop="74096"/>
          <exon e_start="72627" e_stop="72549"/>
          <exon e_start="72310" e_stop="72246"/>
          <exon e_start="71381" e_stop="71282"/>
          <exon e_start="71203" e_stop="71162"/>
          <exon e_start="71083" e_stop="71042"/>
          <exon e_start="70741" e_stop="70639"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGGGTAAGCTTAACTTATAACAAATTTTTAGACCAATTTCAATTCAAGTATTCTGATTGTTATCTTCTGGCTGCTCTATAGACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAGGTATTCTCATTTGATTCTAAAATGGTCAACATGATGCATGTGTTCAATAGTTAGTAACTTACTATTTTATCATAACAGGAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAGGTAGGTTGCCCATACATGTGATTCTAACTCATTTTCTAGCTCCATGTATATTACTAGTTGTATTGTGATTGATTTTTGTTAGATTAGGTTTATTTTTCGTCAATTTTTTTTTTTTTACCTAACTAAGTTGCTAAAGTAAAGTATTTCTGTTGAAGAGTCTCACATCGGCTCTTTTTAAGGAATGGGTATATGGGAAATTGTGAGCTAGTTTTTAGGGTTCAGTAATTATTAAGCCGAAGATCAATATTCCTTATTGATTGATGTACCAAAGTCATTGAATTGCATATAATTTGTTAGCAGATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCT</genome_strand>
        <mrna_strand>CAATAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGG..............................................................................ACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAG..............................................................................GAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAG............................................................................................................................................................................................................................................................................................................ATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E240971" ref_strand="+" ref_description="SGN-E240971 [cLED-24-F19]">
      <seq>aagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggggcctctgactatagatgatcttgagcatcttgaagtccaactagatacttccctcaaacacattaggtccaccaggacacaaatgatgcttgatcagctttctgatcttcaaactaaggagaaattgtggaatgaggctaacaaggttcttgaaagaaagatggaagaaatatatgctgaaaacaacatgcaacaagcatggggtggtggtgagcaaagtctcaattatggtcagcagcaacatcctcaatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="72877" stop="70348"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72577" g_stop="72549" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72548" i_stop="72311" i_length="238">
            <donor d_prob="0.840" d_score="0.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72310" g_stop="72246" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="94" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72245" i_stop="71382" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71381" g_stop="71282" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="194" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71281" i_stop="71204" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71203" g_stop="71162" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="236" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71161" i_stop="71084" i_length="78">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71083" g_stop="71042" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="278" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71041" i_stop="70742" i_length="300">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70741" g_stop="70648" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="372" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E240971" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240971" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72577" e_stop="72549"/>
          <exon e_start="72310" e_stop="72246"/>
          <exon e_start="71381" e_stop="71282"/>
          <exon e_start="71203" e_stop="71162"/>
          <exon e_start="71083" e_stop="71042"/>
          <exon e_start="70741" e_stop="70648"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGGGTAAGCTTAACTTATAACAAATTTTTAGACCAATTTCAATTCAAGTATTCTGATTGTTATCTTCTGGCTGCTCTATAGACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAGGTATTCTCATTTGATTCTAAAATGGTCAACATGATGCATGTGTTCAATAGTTAGTAACTTACTATTTTATCATAACAGGAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAGGTAGGTTGCCCATACATGTGATTCTAACTCATTTTCTAGCTCCATGTATATTACTAGTTGTATTGTGATTGATTTTTGTTAGATTAGGTTTATTTTTCGTCAATTTTTTTTTTTTTACCTAACTAAGTTGCTAAAGTAAAGTATTTCTGTTGAAGAGTCTCACATCGGCTCTTTTTAAGGAATGGGTATATGGGAAATTGTGAGCTAGTTTTTAGGGTTCAGTAATTATTAAGCCGAAGATCAATATTCCTTATTGATTGATGTACCAAAGTCATTGAATTGCATATAATTTGTTAGCAGATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTC</genome_strand>
        <mrna_strand>AAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGG..............................................................................ACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAG..............................................................................GAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAG............................................................................................................................................................................................................................................................................................................ATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E708521" ref_strand="+" ref_description="SGN-E708521 [FA36AA06]">
      <seq>cagtagataggaagaaatgccatagataaaaacaacccatgttcactttttctctctctaaacattgaaattcaaccaaaacaaaaaacaaaagttgataagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggggcctctgactatagatgatcttgagcatcttgaagtccaactagatacttccctcaaacacattaggtccaccaggacacaaatgatgcttgatcagctttctgatcttcaaactaaggagaaattgtggaatgaggctaacaaggttcttgaaagaaagcagatggaagaaatatatgctgaaaacaacatgcaacaagcatggggtggtggtgagcaaagtctcaattatggtcagcagcaacatcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="74845" stop="70354"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74546" g_stop="74096" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="451" r_length="451" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74095" i_stop="72628" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72627" g_stop="72549" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="530" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72548" i_stop="72311" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72310" g_stop="72246" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="595" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72245" i_stop="71382" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71381" g_stop="71282" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="695" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71281" i_stop="71204" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71203" g_stop="71162" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="696" r_stop="737" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71161" i_stop="71084" i_length="78">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71083" g_stop="71042" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="738" r_stop="779" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="71041" i_stop="70745" i_length="297">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.885" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="70744" g_stop="70654" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="780" r_stop="870" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E708521" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>870</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74546" e_stop="74096"/>
          <exon e_start="72627" e_stop="72549"/>
          <exon e_start="72310" e_stop="72246"/>
          <exon e_start="71381" e_stop="71282"/>
          <exon e_start="71203" e_stop="71162"/>
          <exon e_start="71083" e_stop="71042"/>
          <exon e_start="70744" e_stop="70654"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGATAGGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGGGTAAGCTTAACTTATAACAAATTTTTAGACCAATTTCAATTCAAGTATTCTGATTGTTATCTTCTGGCTGCTCTATAGACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAGGTATTCTCATTTGATTCTAAAATGGTCAACATGATGCATGTGTTCAATAGTTAGTAACTTACTATTTTATCATAACAGGAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAGGTAGGTTGCCCATACATGTGATTCTAACTCATTTTCTAGCTCCATGTATATTACTAGTTGTATTGTGATTGATTTTTGTTAGATTAGGTTTATTTTTCGTCAATTTTTTTTTTTTTACCTAACTAAGTTGCTAAAGTAAAGTATTTCTGTTGAAGAGTCTCACATCGGCTCTTTTTAAGGAATGGGTATATGGGAAATTGTGAGCTAGTTTTTAGGGTTCAGTAATTATTAAGCCGAAGATCAATATTCCTTATTGATTGATGTACCAAAGTCATTGAATTGCATATAATTTGTTAGCAGATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTC</genome_strand>
        <mrna_strand>CAGTAGATAGGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGG..............................................................................ACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAG..............................................................................GAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAG.........................................................................................................................................................................................................................................................................................................CAGATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E704566" ref_strand="+" ref_description="SGN-E704566 [FA24CF02]">
      <seq>gttgataagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggggcctctgactatagatgatcttgagcatcttgaagtccaactagatacttccctcaaacacattaggtccaccaggacacaaatgatgcttgatcagctttctgatcttcaaactaaggagaaattgtggaatgaggctaacaaggttcttgaaagaaagcagatggaagaaatatatgctgaaaacaacatgcaacaagcatggggtggtggtgagcaaagtctcaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="74753" stop="70375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74453" g_stop="74096" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74095" i_stop="72628" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72627" g_stop="72549" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="437" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72548" i_stop="72311" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72310" g_stop="72246" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="502" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72245" i_stop="71382" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71381" g_stop="71282" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="602" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71281" i_stop="71204" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71203" g_stop="71162" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="644" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71161" i_stop="71084" i_length="78">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71083" g_stop="71042" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="686" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="71041" i_stop="70745" i_length="297">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.885" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="70744" g_stop="70675" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="687" r_stop="756" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E704566" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74453" e_stop="74096"/>
          <exon e_start="72627" e_stop="72549"/>
          <exon e_start="72310" e_stop="72246"/>
          <exon e_start="71381" e_stop="71282"/>
          <exon e_start="71203" e_stop="71162"/>
          <exon e_start="71083" e_stop="71042"/>
          <exon e_start="70744" e_stop="70675"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGGGTAAGCTTAACTTATAACAAATTTTTAGACCAATTTCAATTCAAGTATTCTGATTGTTATCTTCTGGCTGCTCTATAGACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAGGTATTCTCATTTGATTCTAAAATGGTCAACATGATGCATGTGTTCAATAGTTAGTAACTTACTATTTTATCATAACAGGAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAGGTAGGTTGCCCATACATGTGATTCTAACTCATTTTCTAGCTCCATGTATATTACTAGTTGTATTGTGATTGATTTTTGTTAGATTAGGTTTATTTTTCGTCAATTTTTTTTTTTTTACCTAACTAAGTTGCTAAAGTAAAGTATTTCTGTTGAAGAGTCTCACATCGGCTCTTTTTAAGGAATGGGTATATGGGAAATTGTGAGCTAGTTTTTAGGGTTCAGTAATTATTAAGCCGAAGATCAATATTCCTTATTGATTGATGTACCAAAGTCATTGAATTGCATATAATTTGTTAGCAGATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATT</genome_strand>
        <mrna_strand>GTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGG..............................................................................ACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAG..............................................................................GAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAG.........................................................................................................................................................................................................................................................................................................CAGATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E256647" ref_strand="+" ref_description="SGN-E256647 [cLEG-40-E23]">
      <seq>agttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggggcctctgactatagatgatcttgagcatcttgaagtccaactagatacttccctcaaacacattaggtccaccaggacacaaatgatgcttgatcagctttctgatcttcaaactaaggagaaattgtggaatgaggctaacaaggttcttgaaagaaagatggaagaaatatatgctgaaaacaacatgcaacaagcatgggggtggtgagtgagcaaaggtctcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="74566" stop="70376"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74266" g_stop="74096" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74095" i_stop="72628" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72627" g_stop="72549" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="250" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72548" i_stop="72311" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72310" g_stop="72246" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="315" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72245" i_stop="71382" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71381" g_stop="71282" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="415" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71281" i_stop="71204" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71203" g_stop="71162" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="457" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71161" i_stop="71084" i_length="78">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71083" g_stop="71042" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="499" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="71041" i_stop="70742" i_length="300">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="70741" g_stop="70676" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="568" r_length="69" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E256647" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74266" e_stop="74096"/>
          <exon e_start="72627" e_stop="72549"/>
          <exon e_start="72310" e_stop="72246"/>
          <exon e_start="71381" e_stop="71282"/>
          <exon e_start="71203" e_stop="71162"/>
          <exon e_start="71083" e_stop="71042"/>
          <exon e_start="70741" e_stop="70676"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGGGTAAGCTTAACTTATAACAAATTTTTAGACCAATTTCAATTCAAGTATTCTGATTGTTATCTTCTGGCTGCTCTATAGACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAGGTATTCTCATTTGATTCTAAAATGGTCAACATGATGCATGTGTTCAATAGTTAGTAACTTACTATTTTATCATAACAGGAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAGGTAGGTTGCCCATACATGTGATTCTAACTCATTTTCTAGCTCCATGTATATTACTAGTTGTATTGTGATTGATTTTTGTTAGATTAGGTTTATTTTTCGTCAATTTTTTTTTTTTTACCTAACTAAGTTGCTAAAGTAAAGTATTTCTGTTGAAGAGTCTCACATCGGCTCTTTTTAAGGAATGGGTATATGGGAAATTGTGAGCTAGTTTTTAGGGTTCAGTAATTATTAAGCCGAAGATCAATATTCCTTATTGATTGATGTACCAAAGTCATTGAATTGCATATAATTTGTTAGCAGATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCAT-GGGGTGGTG-GTGAGCAAA-GTCTCAAT</genome_strand>
        <mrna_strand>AGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGG..............................................................................ACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAG..............................................................................GAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAG............................................................................................................................................................................................................................................................................................................ATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGGTGGTGAGTGAGCAAAGGTCTCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E706022" ref_strand="+" ref_description="SGN-E706022 [FA28DB09]">
      <seq>gttgataagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggggcctctgactatagatgatcttgagcatcttgaagtccaactagatacttccctcaaacacattaggtccaccaggacacaacggatgcttgatcagctttctgatcttcaaactaaggagaaattgtggaatgaggctaacaaggttcttgaaagaaagcagatggaagaaatatatgctgaaaacaacatgcaacaagcatggggtggtggtgagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="74753" stop="70387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74453" g_stop="74096" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74095" i_stop="72628" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72627" g_stop="72549" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="437" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72548" i_stop="72311" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72310" g_stop="72246" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="502" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72245" i_stop="71382" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71381" g_stop="71282" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="602" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71281" i_stop="71204" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71203" g_stop="71162" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="644" r_length="42" r_score="0.952"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71161" i_stop="71084" i_length="78">
            <donor d_prob="0.943" d_score="0.95"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71083" g_stop="71042" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="686" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="71041" i_stop="70745" i_length="297">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.885" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="70744" g_stop="70687" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="687" r_stop="744" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E706022" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706022" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74453" e_stop="74096"/>
          <exon e_start="72627" e_stop="72549"/>
          <exon e_start="72310" e_stop="72246"/>
          <exon e_start="71381" e_stop="71282"/>
          <exon e_start="71203" e_stop="71162"/>
          <exon e_start="71083" e_stop="71042"/>
          <exon e_start="70744" e_stop="70687"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGGGTAAGCTTAACTTATAACAAATTTTTAGACCAATTTCAATTCAAGTATTCTGATTGTTATCTTCTGGCTGCTCTATAGACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAGGTATTCTCATTTGATTCTAAAATGGTCAACATGATGCATGTGTTCAATAGTTAGTAACTTACTATTTTATCATAACAGGAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAGGTAGGTTGCCCATACATGTGATTCTAACTCATTTTCTAGCTCCATGTATATTACTAGTTGTATTGTGATTGATTTTTGTTAGATTAGGTTTATTTTTCGTCAATTTTTTTTTTTTTACCTAACTAAGTTGCTAAAGTAAAGTATTTCTGTTGAAGAGTCTCACATCGGCTCTTTTTAAGGAATGGGTATATGGGAAATTGTGAGCTAGTTTTTAGGGTTCAGTAATTATTAAGCCGAAGATCAATATTCCTTATTGATTGATGTACCAAAGTCATTGAATTGCATATAATTTGTTAGCAGATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGC</genome_strand>
        <mrna_strand>GTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGG..............................................................................ACACAACGGATGCTTGATCAGCTTTCTGATCTTCAAACTAAG..............................................................................GAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAG.........................................................................................................................................................................................................................................................................................................CAGATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E710802" ref_strand="+" ref_description="SGN-E710802 [FA56DB05]">
      <seq>taaaaacaacccatgttcactttttctctctctaaacattgaaattcaaccaaaacaaaaaacaaaagttgataagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggggcctctgactatagatgatcttgagcatcttgaagtccaactagatacttccctcaaacacattaggtccaccaggacacaaatgatgcttgatcagctttctgatcttcaaactaaggagaaattgtggaatgaggctaacaaggttcttgaaagaaagatggaagaaatatatgctgaaaacaacatgccaacaagcatggggtggtggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="74820" stop="70390"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74520" g_stop="74096" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74095" i_stop="72628" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72627" g_stop="72549" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="504" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72548" i_stop="72311" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72310" g_stop="72246" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="569" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72245" i_stop="71382" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71381" g_stop="71282" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="669" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71281" i_stop="71204" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71203" g_stop="71162" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="670" r_stop="711" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71161" i_stop="71084" i_length="78">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71083" g_stop="71042" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="712" r_stop="753" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="71041" i_stop="70742" i_length="300">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="70741" g_stop="70690" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="754" r_stop="806" r_length="53" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E710802" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>805</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74520" e_stop="74096"/>
          <exon e_start="72627" e_stop="72549"/>
          <exon e_start="72310" e_stop="72246"/>
          <exon e_start="71381" e_stop="71282"/>
          <exon e_start="71203" e_stop="71162"/>
          <exon e_start="71083" e_stop="71042"/>
          <exon e_start="70741" e_stop="70690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGGGTAAGCTTAACTTATAACAAATTTTTAGACCAATTTCAATTCAAGTATTCTGATTGTTATCTTCTGGCTGCTCTATAGACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAGGTATTCTCATTTGATTCTAAAATGGTCAACATGATGCATGTGTTCAATAGTTAGTAACTTACTATTTTATCATAACAGGAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAGGTAGGTTGCCCATACATGTGATTCTAACTCATTTTCTAGCTCCATGTATATTACTAGTTGTATTGTGATTGATTTTTGTTAGATTAGGTTTATTTTTCGTCAATTTTTTTTTTTTTACCTAACTAAGTTGCTAAAGTAAAGTATTTCTGTTGAAGAGTCTCACATCGGCTCTTTTTAAGGAATGGGTATATGGGAAATTGTGAGCTAGTTTTTAGGGTTCAGTAATTATTAAGCCGAAGATCAATATTCCTTATTGATTGATGTACCAAAGTCATTGAATTGCATATAATTTGTTAGCAGATGGAAGAAATATATGCTGAAAACAACATG-CAACAAGCATGGGGTGGTGGTG</genome_strand>
        <mrna_strand>TAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGG..............................................................................ACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAG..............................................................................GAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAG............................................................................................................................................................................................................................................................................................................ATGGAAGAAATATATGCTGAAAACAACATGCCAACAAGCATGGGGTGGTGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E698426" ref_strand="+" ref_description="SGN-E698426 [FA06BA12]">
      <seq>cgatacaacccatgttcactttttctctctctaaacattgaaattcaaccaaaacaaaaaacaaaagttgataagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggggcctctgactatagatgatcttgagcatcttgaagtccaactagatacttccctcaaacacattaggtccaccangaacacaatgatgcttgatcagctttctgatcttncaactaaggagaaattgtggaatgaggctaaccaggttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="74817" stop="70752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74519" g_stop="74096" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="424" r_length="424" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74095" i_stop="72628" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72627" g_stop="72549" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="503" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72548" i_stop="72311" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72310" g_stop="72246" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="568" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72245" i_stop="71382" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71381" g_stop="71282" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="668" r_length="100" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71281" i_stop="71204" i_length="78">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.604" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71203" g_stop="71162" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="669" r_stop="710" r_length="42" r_score="0.857"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71161" i_stop="71084" i_length="78">
            <donor d_prob="0.943" d_score="0.86"/>
            <acceptor a_prob="0.983" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71083" g_stop="71052" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="711" r_stop="742" r_length="32" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E698426" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698426" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74519" e_stop="74096"/>
          <exon e_start="72627" e_stop="72549"/>
          <exon e_start="72310" e_stop="72246"/>
          <exon e_start="71381" e_stop="71282"/>
          <exon e_start="71203" e_stop="71162"/>
          <exon e_start="71083" e_stop="71052"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGGGTAAGCTTAACTTATAACAAATTTTTAGACCAATTTCAATTCAAGTATTCTGATTGTTATCTTCTGGCTGCTCTATAGACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAGGTATTCTCATTTGATTCTAAAATGGTCAACATGATGCATGTGTTCAATAGTTAGTAACTTACTATTTTATCATAACAGGAGAAATTGTGGAATGAGGCTAACAAGGTTCT</genome_strand>
        <mrna_strand>CGATACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCANG..............................................................................AACACAATGATGCTTGATCAGCTTTCTGATCTTNCAACTAAG..............................................................................GAGAAATTGTGGAATGAGGCTAACCAGGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E578068" ref_strand="+" ref_description="SGN-E578068 [LE08DF03]">
      <seq>aaacaacccatgttcactttttctctctctaaacattgaaattcaaccaaaacaaaaaacaaaagttgataagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggggcctctgactatagatgatcttgagcatcttgaagtccaactagatacttccctcaaacacattaggtccaccaggacacanatgatgcttgatcagctttctgatcttcaaactaaggagaaattgtggaatgaggcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="74817" stop="70861"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74517" g_stop="74096" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="422" r_length="422" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74095" i_stop="72628" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72627" g_stop="72549" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="501" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72548" i_stop="72311" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72310" g_stop="72246" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="566" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72245" i_stop="71382" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71381" g_stop="71282" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="666" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71281" i_stop="71204" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71203" g_stop="71162" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="667" r_stop="708" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71161" i_stop="71084" i_length="78">
            <donor d_prob="0.943" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71083" g_stop="71062" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="709" r_stop="730" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E578068" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E578068" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74517" e_stop="74096"/>
          <exon e_start="72627" e_stop="72549"/>
          <exon e_start="72310" e_stop="72246"/>
          <exon e_start="71381" e_stop="71282"/>
          <exon e_start="71203" e_stop="71162"/>
          <exon e_start="71083" e_stop="71062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGGGTAAGCTTAACTTATAACAAATTTTTAGACCAATTTCAATTCAAGTATTCTGATTGTTATCTTCTGGCTGCTCTATAGACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAGGTATTCTCATTTGATTCTAAAATGGTCAACATGATGCATGTGTTCAATAGTTAGTAACTTACTATTTTATCATAACAGGAGAAATTGTGGAATGAGGCTA</genome_strand>
        <mrna_strand>AAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGG..............................................................................ACACANATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAG..............................................................................GAGAAATTGTGGAATGAGGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E263868" ref_strand="+" ref_description="SGN-E263868 [cLEG-73-A2]">
      <seq>agttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggggcctctgactatagatgatcttgagcatcttgaagtccaactagatacttccctcaaacacattaggtccaccaggacacaaatgatgcttgatcagctttctgatcttcaaactaaggagaaattgtggaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="74566" stop="70861"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74266" g_stop="74096" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74095" i_stop="72628" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72627" g_stop="72549" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="250" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72548" i_stop="72311" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72310" g_stop="72246" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="315" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72245" i_stop="71382" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71381" g_stop="71282" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="415" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71281" i_stop="71204" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71203" g_stop="71162" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="457" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71161" i_stop="71084" i_length="78">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71083" g_stop="71068" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="473" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E263868" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E263868" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74266" e_stop="74096"/>
          <exon e_start="72627" e_stop="72549"/>
          <exon e_start="72310" e_stop="72246"/>
          <exon e_start="71381" e_stop="71282"/>
          <exon e_start="71203" e_stop="71162"/>
          <exon e_start="71083" e_stop="71068"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGGGTAAGCTTAACTTATAACAAATTTTTAGACCAATTTCAATTCAAGTATTCTGATTGTTATCTTCTGGCTGCTCTATAGACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAGGTATTCTCATTTGATTCTAAAATGGTCAACATGATGCATGTGTTCAATAGTTAGTAACTTACTATTTTATCATAACAGGAGAAATTGTGGAATG</genome_strand>
        <mrna_strand>AGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGG..............................................................................ACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAG..............................................................................GAGAAATTGTGGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E242467" ref_strand="+" ref_description="SGN-E242467 [cLED-30-C11]">
      <seq>tagccaagagaagaaattagtgagaaaataaagtctaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagatgatagaaaacatgataaatagacaagtgacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccataaagtgcatctatggaacattggaggtcaatcgatcaatcaaagataatgatcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagtgggggcctctgactatagatgatcttgagcatcttgaagtccaactagatacttacctctaacacattatgtccaccaggacacacatgatgcttgatcagctttctgatcttcaaactaaggagaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="74641" stop="70861"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74341" g_stop="74096" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74095" i_stop="72628" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72627" g_stop="72549" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="326" r_length="80" r_score="0.937"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72548" i_stop="72311" i_length="238">
            <donor d_prob="0.840" d_score="0.94"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72310" g_stop="72246" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="391" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72245" i_stop="71382" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71381" g_stop="71282" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="491" r_length="100" r_score="0.960"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71281" i_stop="71204" i_length="78">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.604" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71203" g_stop="71162" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="533" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71161" i_stop="71084" i_length="78">
            <donor d_prob="0.943" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71083" g_stop="71077" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="540" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E242467" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242467" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74341" e_stop="74096"/>
          <exon e_start="72627" e_stop="72549"/>
          <exon e_start="72310" e_stop="72246"/>
          <exon e_start="71381" e_stop="71282"/>
          <exon e_start="71203" e_stop="71162"/>
          <exon e_start="71083" e_stop="71077"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCA-AAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGGGTAAGCTTAACTTATAACAAATTTTTAGACCAATTTCAATTCAAGTATTCTGATTGTTATCTTCTGGCTGCTCTATAGACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAGGTATTCTCATTTGATTCTAAAATGGTCAACATGATGCATGTGTTCAATAGTTAGTAACTTACTATTTTATCATAACAGGAGAAAT</genome_strand>
        <mrna_strand>TAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTCTAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGATGATAGAAAACATGATAAATAGACAAGTGACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCATAAAGTGCATCTATGGAACATTGGAGGTCAATCGATCAATCAAAGATAATGAT..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTGGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTACCTCTAACACATTATGTCCACCAGG..............................................................................ACACACATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAG..............................................................................GAGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E334238" ref_strand="+" ref_description="SGN-E334238 [cTOD-21-L20]">
      <seq>gcaaatcctaaagttaaaacaatgaatccctaaagaagataggaagaaatgccatagataaaaacaacccatgttcactttttctctctctaaacattgaaattcaaccaaaacaaaaaacaaaagttgataagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggggcctctgactatagatgatcttgagcatcttgaagtccaactagatacttccctcaaacacattaggtccaccaggacacaaatgatgcttgatcagctttctgatcttcaacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="74878" stop="70864"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74578" g_stop="74096" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="483" r_length="483" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74095" i_stop="72628" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72627" g_stop="72549" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="562" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72548" i_stop="72311" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72310" g_stop="72246" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="627" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72245" i_stop="71382" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71381" g_stop="71282" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="727" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71281" i_stop="71204" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71203" g_stop="71164" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="728" r_stop="766" r_length="39" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E334238" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74578" e_stop="74096"/>
          <exon e_start="72627" e_stop="72549"/>
          <exon e_start="72310" e_stop="72246"/>
          <exon e_start="71381" e_stop="71282"/>
          <exon e_start="71203" e_stop="71164"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAATCCTAAAGTTAAAACAATGAATCCCTAAAGAAGATAGGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGGGTAAGCTTAACTTATAACAAATTTTTAGACCAATTTCAATTCAAGTATTCTGATTGTTATCTTCTGGCTGCTCTATAGACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTA</genome_strand>
        <mrna_strand>GCAAATCCTAAAGTTAAAACAATGAATCCCTAAAGAAGATAGGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGG..............................................................................ACACAAATGATGCTTGATCAGCTTTCTGATCTTC-AACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E259474" ref_strand="+" ref_description="SGN-E259474 [cLEG-42-M1]">
      <seq>gttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaacctatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggggcctctgactatagatgatcttgagcatcttgaagtccaactagatacttccctcaaacacattaggtccaccaggacacaaatgatgcttgatcagctttctgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="74693" stop="70873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74394" g_stop="74096" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74095" i_stop="72628" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72627" g_stop="72549" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="379" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72548" i_stop="72311" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72310" g_stop="72246" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="444" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72245" i_stop="71382" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71381" g_stop="71282" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="544" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71281" i_stop="71204" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71203" g_stop="71173" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="575" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E259474" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74394" e_stop="74096"/>
          <exon e_start="72627" e_stop="72549"/>
          <exon e_start="72310" e_stop="72246"/>
          <exon e_start="71381" e_stop="71282"/>
          <exon e_start="71203" e_stop="71173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAA-CTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGGGTAAGCTTAACTTATAACAAATTTTTAGACCAATTTCAATTCAAGTATTCTGATTGTTATCTTCTGGCTGCTCTATAGACACAAATGATGCTTGATCAGCTTTCTGATC</genome_strand>
        <mrna_strand>GTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACCTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGG..............................................................................ACACAAATGATGCTTGATCAGCTTTCTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E255907" ref_strand="+" ref_description="SGN-E255907 [cLEG-35-H6]">
      <seq>tctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggggcctctgactatagatgatcttgagcatcttgaagtccaactagatacttccctcaaacacattaggtccaccaggacacaaatgatgcttgatcagctttctgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="74692" stop="70873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74392" g_stop="74096" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74095" i_stop="72628" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72627" g_stop="72549" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="376" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72548" i_stop="72311" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72310" g_stop="72246" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="441" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72245" i_stop="71382" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71381" g_stop="71282" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="541" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71281" i_stop="71204" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71203" g_stop="71173" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="572" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E255907" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255907" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74392" e_stop="74096"/>
          <exon e_start="72627" e_stop="72549"/>
          <exon e_start="72310" e_stop="72246"/>
          <exon e_start="71381" e_stop="71282"/>
          <exon e_start="71203" e_stop="71173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGGGTAAGCTTAACTTATAACAAATTTTTAGACCAATTTCAATTCAAGTATTCTGATTGTTATCTTCTGGCTGCTCTATAGACACAAATGATGCTTGATCAGCTTTCTGATC</genome_strand>
        <mrna_strand>TCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGG..............................................................................ACACAAATGATGCTTGATCAGCTTTCTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E232028" ref_strand="+" ref_description="SGN-E232028 [cLED-7-K24]">
      <seq>caattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggggcctctgactatagatgatcttgagcatcttgaagtccaactagatacttccctcaaacacattaggtccaccaggacacaaatgatgcttgatcagctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="74685" stop="70878"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74385" g_stop="74096" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74095" i_stop="72628" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72627" g_stop="72549" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="369" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72548" i_stop="72311" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72310" g_stop="72246" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="434" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72245" i_stop="71382" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71381" g_stop="71282" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="534" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71281" i_stop="71204" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71203" g_stop="71178" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="560" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E232028" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232028" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74385" e_stop="74096"/>
          <exon e_start="72627" e_stop="72549"/>
          <exon e_start="72310" e_stop="72246"/>
          <exon e_start="71381" e_stop="71282"/>
          <exon e_start="71203" e_stop="71178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGGGTAAGCTTAACTTATAACAAATTTTTAGACCAATTTCAATTCAAGTATTCTGATTGTTATCTTCTGGCTGCTCTATAGACACAAATGATGCTTGATCAGCTTTC</genome_strand>
        <mrna_strand>CAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGG..............................................................................ACACAAATGATGCTTGATCAGCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E220117" ref_strand="-" ref_description="SGN-E220117 [cLEL-12-J22](-)">
      <seq>tggttgtttcagtttgttagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggggcctctgactatagatgatcttgagcatcttgaagtccaactagatactttcctcaaacacattaggtccaccaggacacaaatgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="74679" stop="70973"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74379" g_stop="74096" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74095" i_stop="72628" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72627" g_stop="72549" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="363" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72548" i_stop="72311" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72310" g_stop="72246" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="428" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72245" i_stop="71382" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71381" g_stop="71282" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="528" r_length="100" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71281" i_stop="71204" i_length="78">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.604" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71203" g_stop="71191" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="541" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E220117" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E220117" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="74379" e_stop="74096"/>
          <exon e_start="72627" e_stop="72549"/>
          <exon e_start="72310" e_stop="72246"/>
          <exon e_start="71381" e_stop="71282"/>
          <exon e_start="71203" e_stop="71191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGGGTAAGCTTAACTTATAACAAATTTTTAGACCAATTTCAATTCAAGTATTCTGATTGTTATCTTCTGGCTGCTCTATAGACACAAATGATGC</genome_strand>
        <mrna_strand>TGGTTGTTTCAGTTTGTTAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTTCCTCAAACACATTAGGTCCACCAGG..............................................................................ACACAAATGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E256808" ref_strand="+" ref_description="SGN-E256808 [cLEG-40-K6]">
      <seq>tctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggggcctctgactatagatgatcttgagcatcttgaagtccaactagatactttcctcaaacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="74692" stop="70996"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74392" g_stop="74096" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74095" i_stop="72628" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72627" g_stop="72549" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="376" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72548" i_stop="72311" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72310" g_stop="72246" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="441" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72245" i_stop="71382" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71381" g_stop="71296" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="527" r_length="86" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E256808" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74392" e_stop="74096"/>
          <exon e_start="72627" e_stop="72549"/>
          <exon e_start="72310" e_stop="72246"/>
          <exon e_start="71381" e_stop="71296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACA</genome_strand>
        <mrna_strand>TCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTTCCTCAAACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E249855" ref_strand="+" ref_description="SGN-E249855 [cLEF-57-M18]">
      <seq>aaaaacaacccatgttcactttttctctctctaaacattgaaattcaaccaaaacaaaaaacaaaagttgataagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggggcctctgactatagatgatcttgagcatcttgaagtccaactagatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="74819" stop="71010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74519" g_stop="74096" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="424" r_length="424" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74095" i_stop="72628" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72627" g_stop="72549" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="503" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72548" i_stop="72311" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72310" g_stop="72246" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="568" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72245" i_stop="71382" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71381" g_stop="71310" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="640" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E249855" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249855" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74519" e_stop="74096"/>
          <exon e_start="72627" e_stop="72549"/>
          <exon e_start="72310" e_stop="72246"/>
          <exon e_start="71381" e_stop="71310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATAC</genome_strand>
        <mrna_strand>AAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E717846" ref_strand="+" ref_description="SGN-E717846 [FC02DF09]">
      <seq>gtctagctagggtttgcatttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcataaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatggggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggggcctctgactatagatgatcttgagcatcttgaagtccaacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="74712" stop="71015"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74412" g_stop="74096" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74095" i_stop="72628" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72627" g_stop="72549" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="396" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72548" i_stop="72311" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72310" g_stop="72246" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="461" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72245" i_stop="71382" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71381" g_stop="71315" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="528" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E717846" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717846" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74412" e_stop="74096"/>
          <exon e_start="72627" e_stop="72549"/>
          <exon e_start="72310" e_stop="72246"/>
          <exon e_start="71381" e_stop="71315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTA</genome_strand>
        <mrna_strand>GTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCATAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATGGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E259037" ref_strand="+" ref_description="SGN-E259037 [cLEG-41-M1]">
      <seq>tctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggggcctctgactatagatgatcttgagcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="74692" stop="71029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74392" g_stop="74096" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74095" i_stop="72628" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72627" g_stop="72549" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="376" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72548" i_stop="72311" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72310" g_stop="72246" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="441" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72245" i_stop="71382" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71381" g_stop="71329" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="494" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E259037" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259037" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74392" e_stop="74096"/>
          <exon e_start="72627" e_stop="72549"/>
          <exon e_start="72310" e_stop="72246"/>
          <exon e_start="71381" e_stop="71329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATC</genome_strand>
        <mrna_strand>TCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E231244" ref_strand="+" ref_description="SGN-E231244 [cLED-5-J21]">
      <seq>aaaaacaaaagttgataagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggggcctctgactatagatgatcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="74763" stop="71034"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74463" g_stop="74096" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="368" r_length="368" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74095" i_stop="72628" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72627" g_stop="72549" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="447" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72548" i_stop="72311" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72310" g_stop="72246" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="512" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72245" i_stop="71382" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71381" g_stop="71334" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="560" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E231244" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74463" e_stop="74096"/>
          <exon e_start="72627" e_stop="72549"/>
          <exon e_start="72310" e_stop="72246"/>
          <exon e_start="71381" e_stop="71334"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGA</genome_strand>
        <mrna_strand>AAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E248546" ref_strand="+" ref_description="SGN-E248546 [cLEF-59-H6]">
      <seq>ggaagaaatgccatagataaaaacaacccatgttcactttttctctctctaaacattgaaattcaaccaaaacaaaaaacaaaagttgataagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggggcctctgactatagatgatcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="74837" stop="71035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74537" g_stop="74096" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="442" r_length="442" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74095" i_stop="72628" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72627" g_stop="72549" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="521" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72548" i_stop="72311" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72310" g_stop="72246" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="586" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72245" i_stop="71382" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71381" g_stop="71335" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="633" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E248546" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248546" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74537" e_stop="74096"/>
          <exon e_start="72627" e_stop="72549"/>
          <exon e_start="72310" e_stop="72246"/>
          <exon e_start="71381" e_stop="71335"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTG</genome_strand>
        <mrna_strand>GGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E259917" ref_strand="+" ref_description="SGN-E259917 [cLEG-51-A2]">
      <seq>ttggttgtttcagtaggagagaaaagaggatctatgagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccacatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggggcctctgactatacatgatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="74680" stop="71037"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74380" g_stop="74096" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74095" i_stop="72628" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72627" g_stop="72549" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="364" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72548" i_stop="72311" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72310" g_stop="72246" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="429" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72245" i_stop="71382" i_length="864">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71381" g_stop="71337" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="474" r_length="45" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E259917" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259917" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74380" e_stop="74096"/>
          <exon e_start="72627" e_stop="72549"/>
          <exon e_start="72310" e_stop="72246"/>
          <exon e_start="71381" e_stop="71337"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCT</genome_strand>
        <mrna_strand>TTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTATGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCACATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATACATGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E241612" ref_strand="+" ref_description="SGN-E241612 [cLED-36-O9]">
      <seq>agagaagaaattagtgagaaaataacgtggaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggatcgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="74635" stop="71058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74335" g_stop="74096" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74095" i_stop="72628" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72627" g_stop="72549" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="319" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72548" i_stop="72311" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72310" g_stop="72246" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="384" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72245" i_stop="71382" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71381" g_stop="71358" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="408" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E241612" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74335" e_stop="74096"/>
          <exon e_start="72627" e_stop="72549"/>
          <exon e_start="72310" e_stop="72246"/>
          <exon e_start="71381" e_stop="71358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGG</genome_strand>
        <mrna_strand>AGAGAAGAAATTAGTGAGAAAATAACGTGGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATCGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E257028" ref_strand="+" ref_description="SGN-E257028 [cLEG-44-C20]">
      <seq>ggatcccccgggctgcaggttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcataggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="74693" stop="71060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74402" g_stop="74096" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="317" r_length="308" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74095" i_stop="72628" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72627" g_stop="72549" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="396" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72548" i_stop="72311" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72310" g_stop="72246" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="461" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72245" i_stop="71382" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71381" g_stop="71360" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="483" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E257028" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257028" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74402" e_stop="74096"/>
          <exon e_start="72627" e_stop="72549"/>
          <exon e_start="72310" e_stop="72246"/>
          <exon e_start="71381" e_stop="71360"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTGCA-TTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTG</genome_strand>
        <mrna_strand>GGGCTGCAGGTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCATAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E249093" ref_strand="+" ref_description="SGN-E249093 [cLEF-49-L5]">
      <seq>actttttctctctctaaacattgaaattcaaccaaaacaaaaaggaaaagttgataagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcataggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="74802" stop="71946"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74502" g_stop="74096" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="407" r_length="407" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74095" i_stop="72628" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72627" g_stop="72549" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="486" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72548" i_stop="72311" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72310" g_stop="72246" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="551" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E249093" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249093" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74502" e_stop="74096"/>
          <exon e_start="72627" e_stop="72549"/>
          <exon e_start="72310" e_stop="72246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG</genome_strand>
        <mrna_strand>ACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAGGAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCATAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E237974" ref_strand="+" ref_description="SGN-E237974 [cLED-18-F7]">
      <seq>aaaacaaaaaacaaaagttgataagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccatatatgagtcgctgcagcgatatcaaagacaccttcttggaaatgagttggggcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="74769" stop="71946"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74469" g_stop="74096" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="374" r_length="374" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74095" i_stop="72628" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72627" g_stop="72549" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="453" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72548" i_stop="72311" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72310" g_stop="72246" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="518" r_length="65" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E237974" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237974" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74469" e_stop="74096"/>
          <exon e_start="72627" e_stop="72549"/>
          <exon e_start="72310" e_stop="72246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG</genome_strand>
        <mrna_strand>AAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCATATATGAGTCGCTGCAGCGATATCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E326734" ref_strand="+" ref_description="SGN-E326734 [cTOC-25-E17]">
      <seq>taaagctctaaggtatctaaatttggagtacctaagcaaattctaaagttaaaacaatgaatccctaaagaagataggaagaaatgccatagataaaaacaacccatgttcactttttctctctctaaacattgaaattcaaccaaaacaaaaaacaaaagttgataagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaaactcaaagccaaatatgagtcgctgcagcgatatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="74913" stop="71950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74613" g_stop="74096" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74095" i_stop="72628" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72627" g_stop="72549" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="597" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72548" i_stop="72311" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72310" g_stop="72250" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="659" r_length="62" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E326734" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74613" e_stop="74096"/>
          <exon e_start="72627" e_stop="72549"/>
          <exon e_start="72310" e_stop="72250"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGCTCTAAGGTATCTAAATTTGGAGTACCTAAGCAAATCCTAAAGTTAAAACAATGAATCCCTAAAGAAGATAGGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTG-AAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATC</genome_strand>
        <mrna_strand>TAAAGCTCTAAGGTATCTAAATTTGGAGTACCTAAGCAAATTCTAAAGTTAAAACAATGAATCCCTAAAGAAGATAGGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E272794" ref_strand="+" ref_description="SGN-E272794 [cLEM-21-L6]">
      <seq>aaaacaaaagttgattagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="74762" stop="71950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74462" g_stop="74096" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74095" i_stop="72628" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72627" g_stop="72549" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="446" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72548" i_stop="72311" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72310" g_stop="72250" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="507" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E272794" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272794" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74462" e_stop="74096"/>
          <exon e_start="72627" e_stop="72549"/>
          <exon e_start="72310" e_stop="72250"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATC</genome_strand>
        <mrna_strand>AAAACAAAAGTTGATTAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E329854" ref_strand="+" ref_description="SGN-E329854 [cTOD-3-P3]">
      <seq>aagaagataggaagaaatgccatagataaaaacaacccatgttgactttttctctctctaaacattgaaattcaaccaaaacaaaaaacaaaagttgataagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="74846" stop="71951"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74546" g_stop="74096" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="451" r_length="451" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74095" i_stop="72628" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72627" g_stop="72549" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="530" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72548" i_stop="72311" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72310" g_stop="72251" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="590" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E329854" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329854" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74546" e_stop="74096"/>
          <exon e_start="72627" e_stop="72549"/>
          <exon e_start="72310" e_stop="72251"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGATAGGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATAT</genome_strand>
        <mrna_strand>AAGAAGATAGGAAGAAATGCCATAGATAAAAACAACCCATGTTGACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E310415" ref_strand="+" ref_description="SGN-E310415 [cTOA-10-A12]">
      <seq>ggaagaaatgccatagataaaaacaacccatgttcactttttctctctctaaacattgaaattcaaccaaaacaaaaaacaaaagttgataagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgcgctttgtgatgctgaagttgctctactcgttttctctaatcgcggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="74837" stop="71977"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74537" g_stop="74096" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="442" r_length="442" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74095" i_stop="72628" i_length="1468">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72627" g_stop="72549" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="521" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72548" i_stop="72311" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72310" g_stop="72277" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="555" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E310415" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74537" e_stop="74096"/>
          <exon e_start="72627" e_stop="72549"/>
          <exon e_start="72310" e_stop="72277"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAG</genome_strand>
        <mrna_strand>GGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGCGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGCGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E233741" ref_strand="+" ref_description="SGN-E233741 [cLED-14-K13]">
      <seq>aaaaaacaaaagttgataagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="74764" stop="72268"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74464" g_stop="74096" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74095" i_stop="72628" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72627" g_stop="72568" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="429" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E233741" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233741" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74464" e_stop="74096"/>
          <exon e_start="72627" e_stop="72568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCG</genome_strand>
        <mrna_strand>AAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E239952" ref_strand="+" ref_description="SGN-E239952 [cLED-29-D23]">
      <seq>agagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="74568" stop="72272"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74268" g_stop="74096" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74095" i_stop="72628" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72627" g_stop="72572" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="229" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E239952" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>229</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239952" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74268" e_stop="74096"/>
          <exon e_start="72627" e_stop="72572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCA</genome_strand>
        <mrna_strand>AGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E319441" ref_strand="+" ref_description="SGN-E319441 [cTOB-15-F10]">
      <seq>caaatcctaaagttaaaacaatgaatccctaaagaagataggaagaaatgccatagataaaaacaacccatgttcactttttctctctctaaacattgaaattcaaccaaaacaaaaaacaaaagttgataagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagatgctctactcgttttctctaatcgcggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="74877" stop="72291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74577" g_stop="74096" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="482" r_length="482" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74095" i_stop="72628" i_length="1468">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.917" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72627" g_stop="72591" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="519" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E319441" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319441" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74577" e_stop="74096"/>
          <exon e_start="72627" e_stop="72591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATCCTAAAGTTAAAACAATGAATCCCTAAAGAAGATAGGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGC</genome_strand>
        <mrna_strand>CAAATCCTAAAGTTAAAACAATGAATCCCTAAAGAAGATAGGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGATGCTCTACTCGTTTTCTCTAATCGCGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E220508" ref_strand="-" ref_description="SGN-E220508 [cLEL-12-J22](-)">
      <seq>tggttgtttcagtaggagagagaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="74679" stop="72294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74379" g_stop="74096" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74095" i_stop="72628" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72627" g_stop="72594" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="318" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E220508" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>318</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E220508" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="74379" e_stop="74096"/>
          <exon e_start="72627" e_stop="72594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGC</genome_strand>
        <mrna_strand>TGGTTGTTTCAGTAGGAGAGAGAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E231068" ref_strand="+" ref_description="SGN-E231068 [cLED-5-B4]">
      <seq>aaaaaacaaaagttgataagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="74764" stop="72301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74464" g_stop="74096" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74095" i_stop="72628" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72627" g_stop="72601" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="396" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E231068" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231068" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74464" e_stop="74096"/>
          <exon e_start="72627" e_stop="72601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCA</genome_strand>
        <mrna_strand>AAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E231123" ref_strand="+" ref_description="SGN-E231123 [cLED-5-A17]">
      <seq>taggaagaaatgccatagataaaaacaacccatgttcactttttctctctctaaacattgaaattcaaccaaaacaaaaaacaaaagttgataagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttctttcacaattttggttgtttcagtaggagagaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="74839" stop="72308"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74539" g_stop="74096" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74095" i_stop="72628" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72627" g_stop="72608" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="463" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E231123" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231123" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74539" e_stop="74096"/>
          <exon e_start="72627" e_stop="72608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATA</genome_strand>
        <mrna_strand>TAGGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAG-AAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E319419" ref_strand="+" ref_description="SGN-E319419 [cTOB-15-J23]">
      <seq>gcaaatcctaaagttaaaacaatgaatccctaaagaagataggaagaaatgccatagataaaaacaacccatgttcactttttctctctctaaacattgaaattcaaccaaaacaaaaaacaaaagttgataagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagatgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaattatgctcaaaacacttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="74878" stop="72310"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74578" g_stop="74096" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="483" r_length="483" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74095" i_stop="72628" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72627" g_stop="72610" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="502" r_length="19" r_score="0.889"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E319419" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319419" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74578" e_stop="74096"/>
          <exon e_start="72627" e_stop="72610"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAATCCTAAAGTTAAAACAATGAATCCCTAAAGAAGATAGGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAG-TATGCTCAAAACACTTGA</genome_strand>
        <mrna_strand>GCAAATCCTAAAGTTAAAACAATGAATCCCTAAAGAAGATAGGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGATGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGCTCAAAACACTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E397746" ref_strand="+" ref_description="SGN-E397746 [TUS-46-M16]">
      <seq>ttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaagaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="74693" stop="73824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74393" g_stop="74124" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="270" r_length="270" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E397746" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>270</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397746" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74393" e_stop="74124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAA</genome_strand>
        <mrna_strand>TTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAGAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E326298" ref_strand="+" ref_description="SGN-E326298 [cTOC-14-E4]">
      <seq>taaagaagataggaagaaatgccatagataaaaacaacccatgttcactttttctctctctaaaccattgaaattcaaccaaaacaaaaaaccaaaagttgataagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttttttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcataagaaggagggatgggtagaggaagagcttagctgaacaggatagaaaaccagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgcgatgctgaagttgctctactcgatttctctaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="74848" stop="73830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74548" g_stop="74130" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="421" r_length="421" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E326298" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326298" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74548" e_stop="74130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGAAGATAGGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAA-CATTGAAATTCAACCAAAACAAAAAA-CAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATC</genome_strand>
        <mrna_strand>TAAAGAAGATAGGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACCATTGAAATTCAACCAAAACAAAAAACCAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTTTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCATAAGAAGGAGGGATGGGTAGAGGAAGAGCTTAGCTGAACAGGATAGAAAACCAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGCGATGCTGAAGTTGCTCTACTCGATTTCTCTAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E378475" ref_strand="+" ref_description="SGN-E378475 [TUS-46-M16]">
      <seq>gtagaaaaagatcatcagaggaaggagggatgggtataggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcagagaggagaaatggattgctcnaaaaagcttatgaactatctgtgctttgtgatgctgaagttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="74609" stop="73850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74309" g_stop="74150" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E378475" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>160</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378475" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74309" e_stop="74150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGC</genome_strand>
        <mrna_strand>GTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTATAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAGAGAGGAGAAATGGATTGCTCNAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E233327" ref_strand="+" ref_description="SGN-E233327 [cLED-9-G21]">
      <seq>gctctaaggtatctaaatttggagtacctaagcaaatcctaaagttaaaacaatgaatccctaaagaagataggaagaaatgccatagataaaaacaacccatgttcactttttctctctctaaacattgaaattcaaccaaaacaaaaaacaaaagttgataagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="74909" stop="73857"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74609" g_stop="74157" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="453" r_length="453" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E233327" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74609" e_stop="74157"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTAAGGTATCTAAATTTGGAGTACCTAAGCAAATCCTAAAGTTAAAACAATGAATCCCTAAAGAAGATAGGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTG</genome_strand>
        <mrna_strand>GCTCTAAGGTATCTAAATTTGGAGTACCTAAGCAAATCCTAAAGTTAAAACAATGAATCCCTAAAGAAGATAGGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E242119" ref_strand="+" ref_description="SGN-E242119 [cLED-37-G4]">
      <seq>gctctaaggtatctaaatttggagtacctaagcaaatcctaaagttaaaacaatgaatccctaaagaagataggaagaaatgccatagataaaaacaacccatgttcactttttctctctctaaacattgaaattcaaccaaaacaaaaaacaaaagttgataagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="74909" stop="73864"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74609" g_stop="74164" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="446" r_length="446" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E242119" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242119" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74609" e_stop="74164"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTAAGGTATCTAAATTTGGAGTACCTAAGCAAATCCTAAAGTTAAAACAATGAATCCCTAAAGAAGATAGGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGT</genome_strand>
        <mrna_strand>GCTCTAAGGTATCTAAATTTGGAGTACCTAAGCAAATCCTAAAGTTAAAACAATGAATCCCTAAAGAAGATAGGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E275494" ref_strand="+" ref_description="SGN-E275494 [cLEN-10-K15]">
      <seq>aaacaacccatgttcactttttctctctctaaacattgaaattcaaccaaaacaaaaaacaaaagttgataagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="74817" stop="73864"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74517" g_stop="74164" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E275494" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74517" e_stop="74164"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGT</genome_strand>
        <mrna_strand>AAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E240115" ref_strand="+" ref_description="SGN-E240115 [cLED-32-M4]">
      <seq>taggaagaaatgccatagataaaaacaacccatgttcactttttctctctctaaacattgaaattcaaccaaaacaaaaaacaaaagttgataagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttctttcacaattttggttgtttcagtaggagagaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="74839" stop="73875"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74539" g_stop="74175" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="364" r_length="364" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E240115" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>365</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240115" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74539" e_stop="74175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTAT</genome_strand>
        <mrna_strand>TAGGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAG-AAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E319557" ref_strand="+" ref_description="SGN-E319557 [cTOB-15-J19]">
      <seq>gcaaatcctaaagttgaaacaatgaatccctaaagaagataggaagaaatgccatagataaaaacaacccatgttcactttttctctctctaaacattgaaattcaaccaaaacaaaaaacaaaagttgataagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="74878" stop="73882"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74578" g_stop="74182" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E319557" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319557" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74578" e_stop="74182"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAATCCTAAAGTTAAAACAATGAATCCCTAAAGAAGATAGGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTAT</genome_strand>
        <mrna_strand>GCAAATCCTAAAGTTGAAACAATGAATCCCTAAAGAAGATAGGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E238217" ref_strand="+" ref_description="SGN-E238217 [cLED-22-E12]">
      <seq>tagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgcagaggattgataacaagataaattgactagtcacttttgcatagaggagaaattggattgctcaaaaaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="74641" stop="73885"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74341" g_stop="74185" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E238217" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>157</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238217" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74341" e_stop="74185"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAA-TGGATTGCTCAAAAAAGCT</genome_strand>
        <mrna_strand>TAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGCAGAGGATTGATAACAAGATAAATTGACTAGTCACTTTTGCATAGAGGAGAAATTGGATTGCTCAAAAAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E238239" ref_strand="+" ref_description="SGN-E238239 [cLED-22-M18]">
      <seq>ccatgttcactttttctctctctaaacattgaaattcaaccaaaacaaaaaacaaaagttgataagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagggagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="74810" stop="73967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74510" g_stop="74267" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E238239" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>244</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238239" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74510" e_stop="74267"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAG</genome_strand>
        <mrna_strand>CCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGGGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E390523" ref_strand="+" ref_description="SGN-E390523 [TUS-40-D21]">
      <seq>ctaaagaagataggaagaaatgccatagataaaaacaacccatgttcactttttctctctctaaacattgaaattcaaccaaaacaaaaaacaaaagttgataagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttttttcacaattttggttgtttcagtaagagagaaaagaggatctaatagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcacaggaaggagggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="74849" stop="73978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74549" g_stop="74278" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E390523" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>272</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390523" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74549" e_stop="74278"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAAGAAGATAGGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATG</genome_strand>
        <mrna_strand>CTAAAGAAGATAGGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTTTTTCACAATTTTGGTTGTTTCAGTAAGAGAGAAAAGAGGATCTAATAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCACAGGAAGGAGGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E239829" ref_strand="+" ref_description="SGN-E239829 [cLED-29-F15]">
      <seq>aacaacccatgttcactttttctctctctaaacattgaaattcaaccaaaacaaaaaacaaaagttgataagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcacgagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="74816" stop="73988"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74516" g_stop="74288" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E239829" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>229</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239829" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74516" e_stop="74288"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCA-GAGGA</genome_strand>
        <mrna_strand>AACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCACGAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E321022" ref_strand="+" ref_description="SGN-E321022 [cTOB-13-P19]">
      <seq>gaggtaaagctcttaaggtatctaaatttggagtacctaagcaaatcctaaagttaaaacaatgaatccctaaagaagaataggaagaaaatgccatagataaaaacaacccatgttcactttttctctctctaaacattgaaattcaaccaaaacaaaaaacaaaagttgataagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="74913" stop="73996"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74617" g_stop="74296" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E321022" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321022" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74617" e_stop="74296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCTAAAGCTC-TAAGGTATCTAAATTTGGAGTACCTAAGCAAATCCTAAAGTTAAAACAATGAATCCCTAAAGAAG-ATAGGAAGAA-ATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCA</genome_strand>
        <mrna_strand>GAGGTAAAGCTCTTAAGGTATCTAAATTTGGAGTACCTAAGCAAATCCTAAAGTTAAAACAATGAATCCCTAAAGAAGAATAGGAAGAAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E238315" ref_strand="+" ref_description="SGN-E238315 [cLED-17-I17]">
      <seq>gctctaaggtatctaaatttggagtacctaagcatatcctaaagttaaaacaatgaatccctaaagaagataggaagaaatgccatagataaaaacaacccatgttcactttttctctctctaaacattgaaattcaaccaaaacaaaaaacaaaagttgataagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="74909" stop="74023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74609" g_stop="74323" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E238315" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>287</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74609" e_stop="74323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTAAGGTATCTAAATTTGGAGTACCTAAGCAAATCCTAAAGTTAAAACAATGAATCCCTAAAGAAGATAGGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTA</genome_strand>
        <mrna_strand>GCTCTAAGGTATCTAAATTTGGAGTACCTAAGCATATCCTAAAGTTAAAACAATGAATCCCTAAAGAAGATAGGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E453401" ref_strand="+" ref_description="SGN-E453401 [cSTS-19-J18]">
      <seq>gagaggaagaagcactagggttttttgtggtgcattactatatttactgtctccactttctttccccaaaaaattcttctttttatttgagcatcataattgccgcaattaggcgttagttcctccattatcacacaaaccgtcaatggcgggtgacgacgaaaagaagcagaatggaacttcttttgatctcaatgacttcaccatcatcaaggaaggagatgctgagattcttatgcatgccaaaaatgaagttttctacaacaattcccaggtgaataacagagatatgtctatagctgttttgaggacatttatatcacaacgaaagcaagagcatgacgcaatgttagctagacgaaccaaggctggaaataaggcacctaatgctaaagcggaaaacccaggtgattcagtgcagcataatggtgaatccaatgatggatctgaagtcttgaaagacgcatcccatggtgaatcatctagcattccagtggaacagactaaaaatctacggggaaaaggccgagaagaactaaagcctccacgagttctcgaggctctctcagcttctggattgagggctttaaggtatgctcgtgaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="+" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="88152" stop="91421"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88450" g_stop="88719" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="0.919"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88720" i_stop="90693" i_length="1974">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.081" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90694" g_stop="90978" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="559" r_length="285" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90979" i_stop="91074" i_length="96">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91075" g_stop="91121" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="606" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="+" ref_id="SGN-E453401" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E453401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88450" e_stop="88719"/>
          <exon e_start="90694" e_stop="90978"/>
          <exon e_start="91075" e_stop="91121"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGAAGAGCAAGCACTAGGGTTTTTTGTGGTGCATTCCTATATTTATTGTCTCCACTTTCATTCCCC--AAAA-T-TTCTTTTTATTTGAGCTTCATAATTGCCGCAATTAGGCGTTAGTTTCTCCATTATCACACAAACCGTCAATGGCGGGTGACAACGGAAACAAGCAGAATGGAACTTCTTTTGATCTCAATGACTTCACCATCATCAAAGAAGGAGATGCTGAGATTCTTATGCATGCCAAAAATGAAGTTTTCTACAACAATTCCCAGGTCCTTCTTTTTTCTTTTTTTTTCAGATTCTTATGCTTCATATGAAAGTGCTTATCTAGTTACCTATTTGCCTAAGCCTTACTGTAAGAATTAACTGGACAAGTTATCAAAAGAGTTTTTATTGCGACAAGACATGTGTTCAATTACAAATTAGTATATAGAAATTAAGGAAAAAATTCATTCAGGGTACTTCTAATGTAGCTATGCTGGTGGAATGGCTAATGCGTAGAATTTTTCCATCTGTCTATTTAGTCTGCCAATTGACTGATCTGCTATAGCTCTGTTGTGCTAATATTGCATCTACCAAGGTAGTCTTGTTAGCTATTGAATAATGGGTGAGTTTAACTAGATGATTTTAAGGAATAGAGACAGGGTGTGTGATCTTGGCTAGATACTTTGGGACAAACTTAGATACCACATGCACACAAGGAAGAGGGATAAGGATTAATTCTGCTCGAGTGTTCTCTTATTGTGAACCAACCTATTATATGTCGTTTTCGGTCAAAGTTTTTGTAAGTTCTACAATTTCTAGAATTTGCAATGTTTTGAATGTAGGTGCTTCTTGAATTATAGTTCTTGTAACGTGTGTGAGAGATAGACAGAACAACATTGCCAAAAGTGAAGAGTGTAGAAAAACAGTAAGGTCAAGCTCTACTCGGACTTTAACAGAAAGCACTATTGAAGTGCAATCTTTGGCGAAAAATCCTTAGATGAGGGAAAAAATTAAAAAGTTGGATGTAACTATGTTTATTATAAGATTAATCCAACATATCTATTTACAAACAATTGTGTAGATAATGAAATTGAAAAAAAAAAAACACTGTTCGTAGGGGTATTTACCAGGACGAACAAATAAATGAGCCCAAGATCAGAAGTGATATTGGATACCAATCACATTTGGGGAATGTCTCTGTATCGTATTCGTCTAGAGTGGAGCTTCTTAGCTGCTTGACTATCTCTCACGGGAACCCCAGACTCCACTGCCAAGGTGAATGCATAAACAAAAAAAGTCGTTTTCATTATGGTTTTACAGACGAAAATTACTTAGTATGTTCGTAAGCCAAGAGGTCAACAAGTCAAGTTTAACTACAATTACTTGAATGGCTTTTGGATAACATCCTTTTTCAAAATGTCATTTCTTTATCAAAATGTATCCTTCTTCGGCTCTGTGTGGCTTCAACTGTCAACATATTTTAGTTAATGATACACTAATTATTACTACAAACCTTGAGAAAATATTACGACAAAGGACGAATAAAAATACCGAGTTTGATTCAAAATGTTCATAATTCATCTCTTCATGAAGAATTACCAAACCATTTGATCCTTTGCTCAACTCTATGTCGCATCTGATTCTGACAGATGTAATTGCTTAAAGTCAACCTCTTTTTTCTTATTATTTTTTTCGGTTAACTTTCTTCTCGGTGAAAAAGAGGTAGTTGGGAACTATATTACATTTACTCATTTATTGGTGAAATCAGGTTTTATCTACCGTGGTGTGATTAAGTGTCCAACATAGGTACATTCTGTTTTAGTAATTTTCTGGAGGACTAAAAAGGATCTTGCAAATGTCATTCTTGCCACATGTCTACATCTCCATGTAACATGGGCTCAGAATGTAACTAGTACCTTCTTTTTAGGATAAACGGAGTAGTAGACATTTCCTTTGTTTTTGACTTTGTGACAGACTGACAGCTCAATTCATGGTAACTTACTCATGCAGGAATTTCCACCTAGTAAATATTTAGGACAGGGTAATTTAGCCCTTTTAAGATGACTATTGGCAACTTGTACGCAAATATCTAGTCCTCGATGGTCTTGGCATGCCACCCTGAACAATTCTTGCTTGTATGGTACTTTGTGGTTTATTAATAGCATTCAAAGTTACATCCCTTTATTCTCTATTCTATGTGGTAACATTTAAGGGCAGTGGTAGCCACCTTATTTTAGCTCATCAAAAACTACCTGCAACAGGTGAATAATAGAGACATGTCTATAGCTGTTTTGAGGACATTTATATCACAACGAAAGCTAGAACATGACGCAATGTTAGCTAGACGAACCAAGGCTGGAAATAAGGCACCTAATGCTAAAGTGGAAAACCCAGGTGATTCAGTGCAGCATAATGGTGAATCCACTGATGGATCGGAAGTCTTGAAAGACGCATCCCATGGTGAATCATCTAGCATTCCAGTGGAACAGAATAAAAATCTGCGGGGAAAAGGCCGAGAAGAACTAAAGCCTCCACGAGTTCTCGAGGTATATTGGCCTGTTTTGTTGATTATTAAACGCTTATCAAAAATGAGGTTGTTGCTGTGGTTGACCAACATTTTTTCTTTCAATGTGACTTAATAGGCTCTCTCAGCTTCTGGATTGAGGGCTTTAAGGTATGCTCGTGAAGT</genome_strand>
        <mrna_strand>GAGAGGAAGAAGCACTAGGGTTTTTTGTGGTGCATTACTATATTTACTGTCTCCACTTTCTTTCCCCAAAAAATTCTTCTTTTTATTTGAGCATCATAATTGCCGCAATTAGGCGTTAGTTCCTCCATTATCACACAAACCGTCAATGGCGGGTGACGACGAAAAGAAGCAGAATGGAACTTCTTTTGATCTCAATGACTTCACCATCATCAAGGAAGGAGATGCTGAGATTCTTATGCATGCCAAAAATGAAGTTTTCTACAACAATTCCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATAACAGAGATATGTCTATAGCTGTTTTGAGGACATTTATATCACAACGAAAGCAAGAGCATGACGCAATGTTAGCTAGACGAACCAAGGCTGGAAATAAGGCACCTAATGCTAAAGCGGAAAACCCAGGTGATTCAGTGCAGCATAATGGTGAATCCAATGATGGATCTGAAGTCTTGAAAGACGCATCCCATGGTGAATCATCTAGCATTCCAGTGGAACAGACTAAAAATCTACGGGGAAAAGGCCGAGAAGAACTAAAGCCTCCACGAGTTCTCGAG................................................................................................GCTCTCTCAGCTTCTGGATTGAGGGCTTTAAGGTATGCTCGTGAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E213204" ref_strand="+" ref_description="SGN-E213204 [cLEC-72-L19]">
      <seq>tttttgtggtgcattcctatatttattgtctccactttcattccccaaaatttctttttatttgagcttcataattgccgcaattaggcgttagtttctccattatcacacaaaccgtcaatggcgggtgacaacggaaacaagcagaatggaacttcttttgatctcaatgacttcaccatcatcaaagaaggagatgctgagattcttatgcatgccaaaaatgaagttttctacaacaattcccaggtgaataatagagacatgtctatagctgttttgaggacatttatatcacaacgaaagctagaacatgacgcaatgttagctagacgaaccaaggctggaaataaggcacctaatgctaaagtggaaaacccaggtgattcagtgcagcataatggtgaatccactgatggatcggaagtcttgaaagacgcatcccatggtgaatcatctagcattccagtggaacagaataaaaatctgcggggaaaaggccgagaagaactaaagcctccacgagttctcgaggctctctcagcttctggattgagggctttaaggtatgctcgtgaagtagaaagaaattagccagtcgtggcccttngacatgacaaagcctctgtggaagcttgcangagaaacattaagtttaatggttcagtggcatgctctaanggtggatctcaccttgctgatgcaagggtttatatgcttacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="+" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="88171" stop="91996"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88471" g_stop="88719" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="249" r_length="249" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88720" i_stop="90693" i_length="1974">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.081" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90694" g_stop="90978" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="534" r_length="285" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90979" i_stop="91074" i_length="96">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91075" g_stop="91162" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="622" r_length="88" r_score="0.920"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91163" i_stop="91595" i_length="433">
            <donor d_prob="0.888" d_score="0.85"/>
            <acceptor a_prob="0.952" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91596" g_stop="91696" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="623" r_stop="723" r_length="101" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="+" ref_id="SGN-E213204" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88471" e_stop="88719"/>
          <exon e_start="90694" e_stop="90978"/>
          <exon e_start="91075" e_stop="91162"/>
          <exon e_start="91596" e_stop="91696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGTGGTGCATTCCTATATTTATTGTCTCCACTTTCATTCCCCAAAATTTCTTTTTATTTGAGCTTCATAATTGCCGCAATTAGGCGTTAGTTTCTCCATTATCACACAAACCGTCAATGGCGGGTGACAACGGAAACAAGCAGAATGGAACTTCTTTTGATCTCAATGACTTCACCATCATCAAAGAAGGAGATGCTGAGATTCTTATGCATGCCAAAAATGAAGTTTTCTACAACAATTCCCAGGTCCTTCTTTTTTCTTTTTTTTTCAGATTCTTATGCTTCATATGAAAGTGCTTATCTAGTTACCTATTTGCCTAAGCCTTACTGTAAGAATTAACTGGACAAGTTATCAAAAGAGTTTTTATTGCGACAAGACATGTGTTCAATTACAAATTAGTATATAGAAATTAAGGAAAAAATTCATTCAGGGTACTTCTAATGTAGCTATGCTGGTGGAATGGCTAATGCGTAGAATTTTTCCATCTGTCTATTTAGTCTGCCAATTGACTGATCTGCTATAGCTCTGTTGTGCTAATATTGCATCTACCAAGGTAGTCTTGTTAGCTATTGAATAATGGGTGAGTTTAACTAGATGATTTTAAGGAATAGAGACAGGGTGTGTGATCTTGGCTAGATACTTTGGGACAAACTTAGATACCACATGCACACAAGGAAGAGGGATAAGGATTAATTCTGCTCGAGTGTTCTCTTATTGTGAACCAACCTATTATATGTCGTTTTCGGTCAAAGTTTTTGTAAGTTCTACAATTTCTAGAATTTGCAATGTTTTGAATGTAGGTGCTTCTTGAATTATAGTTCTTGTAACGTGTGTGAGAGATAGACAGAACAACATTGCCAAAAGTGAAGAGTGTAGAAAAACAGTAAGGTCAAGCTCTACTCGGACTTTAACAGAAAGCACTATTGAAGTGCAATCTTTGGCGAAAAATCCTTAGATGAGGGAAAAAATTAAAAAGTTGGATGTAACTATGTTTATTATAAGATTAATCCAACATATCTATTTACAAACAATTGTGTAGATAATGAAATTGAAAAAAAAAAAACACTGTTCGTAGGGGTATTTACCAGGACGAACAAATAAATGAGCCCAAGATCAGAAGTGATATTGGATACCAATCACATTTGGGGAATGTCTCTGTATCGTATTCGTCTAGAGTGGAGCTTCTTAGCTGCTTGACTATCTCTCACGGGAACCCCAGACTCCACTGCCAAGGTGAATGCATAAACAAAAAAAGTCGTTTTCATTATGGTTTTACAGACGAAAATTACTTAGTATGTTCGTAAGCCAAGAGGTCAACAAGTCAAGTTTAACTACAATTACTTGAATGGCTTTTGGATAACATCCTTTTTCAAAATGTCATTTCTTTATCAAAATGTATCCTTCTTCGGCTCTGTGTGGCTTCAACTGTCAACATATTTTAGTTAATGATACACTAATTATTACTACAAACCTTGAGAAAATATTACGACAAAGGACGAATAAAAATACCGAGTTTGATTCAAAATGTTCATAATTCATCTCTTCATGAAGAATTACCAAACCATTTGATCCTTTGCTCAACTCTATGTCGCATCTGATTCTGACAGATGTAATTGCTTAAAGTCAACCTCTTTTTTCTTATTATTTTTTTCGGTTAACTTTCTTCTCGGTGAAAAAGAGGTAGTTGGGAACTATATTACATTTACTCATTTATTGGTGAAATCAGGTTTTATCTACCGTGGTGTGATTAAGTGTCCAACATAGGTACATTCTGTTTTAGTAATTTTCTGGAGGACTAAAAAGGATCTTGCAAATGTCATTCTTGCCACATGTCTACATCTCCATGTAACATGGGCTCAGAATGTAACTAGTACCTTCTTTTTAGGATAAACGGAGTAGTAGACATTTCCTTTGTTTTTGACTTTGTGACAGACTGACAGCTCAATTCATGGTAACTTACTCATGCAGGAATTTCCACCTAGTAAATATTTAGGACAGGGTAATTTAGCCCTTTTAAGATGACTATTGGCAACTTGTACGCAAATATCTAGTCCTCGATGGTCTTGGCATGCCACCCTGAACAATTCTTGCTTGTATGGTACTTTGTGGTTTATTAATAGCATTCAAAGTTACATCCCTTTATTCTCTATTCTATGTGGTAACATTTAAGGGCAGTGGTAGCCACCTTATTTTAGCTCATCAAAAACTACCTGCAACAGGTGAATAATAGAGACATGTCTATAGCTGTTTTGAGGACATTTATATCACAACGAAAGCTAGAACATGACGCAATGTTAGCTAGACGAACCAAGGCTGGAAATAAGGCACCTAATGCTAAAGTGGAAAACCCAGGTGATTCAGTGCAGCATAATGGTGAATCCACTGATGGATCGGAAGTCTTGAAAGACGCATCCCATGGTGAATCATCTAGCATTCCAGTGGAACAGAATAAAAATCTGCGGGGAAAAGGCCGAGAAGAACTAAAGCCTCCACGAGTTCTCGAGGTATATTGGCCTGTTTTGTTGATTATTAAACGCTTATCAAAAATGAGGTTGTTGCTGTGGTTGACCAACATTTTTTCTTTCAATGTGACTTAATAGGCTCTCTCAGCTTCTGGATTGAGGGCTTTAAGGTATGCTCGTGAAGTAG-AAGGAATTAGCCAGGTCGTGGCCCTT-GACAATGACAAAGGTAATTCTATCTCAGTTTAGGGGGTGCTGCATAAAATGTCTAGCTGTTACGACACTAACCTTCACTGCCAACCATGGTAAAAGAAAATGAAATGCATCTCTCTGGTCAAGAGATCACTGAGCAGTCACAAAAGTAAGAATGTCTGATGGAATGGATTTGAAACATCTAATCTAAGAGTGTGTTTTATATAAATCATTCAGGTACTGGCTTTAATGTTTAGGTATTAAAACTGTAAATTAATGCGAGGATAGAAGTGAATTCCTTATTGTCGTGATAAATATGAGAAAAACGGTGGCATAATTCAGAGAATTTTATATAAGCTTTAACCAAAAAATTTACTTGTCTTGTTTCAAAATATCTATATAATAACGTGATACAGATATTACTTCTAATGTCCAATCCAGTATTTGAGTAGGTATTCCTTATGTTGCAGCCTCTGTGGAAGCTTGCAGGAGAAACATTAAGTTTAATGGTTCAGTGGCATGCTCTAAGGTGGAATCTCACCTTGCTGATGCAAGGGTTTATATGCTTACC</genome_strand>
        <mrna_strand>TTTTTGTGGTGCATTCCTATATTTATTGTCTCCACTTTCATTCCCCAAAATTTCTTTTTATTTGAGCTTCATAATTGCCGCAATTAGGCGTTAGTTTCTCCATTATCACACAAACCGTCAATGGCGGGTGACAACGGAAACAAGCAGAATGGAACTTCTTTTGATCTCAATGACTTCACCATCATCAAAGAAGGAGATGCTGAGATTCTTATGCATGCCAAAAATGAAGTTTTCTACAACAATTCCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATAATAGAGACATGTCTATAGCTGTTTTGAGGACATTTATATCACAACGAAAGCTAGAACATGACGCAATGTTAGCTAGACGAACCAAGGCTGGAAATAAGGCACCTAATGCTAAAGTGGAAAACCCAGGTGATTCAGTGCAGCATAATGGTGAATCCACTGATGGATCGGAAGTCTTGAAAGACGCATCCCATGGTGAATCATCTAGCATTCCAGTGGAACAGAATAAAAATCTGCGGGGAAAAGGCCGAGAAGAACTAAAGCCTCCACGAGTTCTCGAG................................................................................................GCTCTCTCAGCTTCTGGATTGAGGGCTTTAAGGTATGCTCGTGAAGTAGAAAGAAATTAGCCA-GTCGTGGCCCTTNGAC-ATGACAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCTGTGGAAGCTTGCANGAGAAACATTAAGTTTAATGGTTCAGTGGCATGCTCTAANGGTGGATCTCACCTTGCTGATGCAAGGGTTTATATGCTTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E442474" ref_strand="+" ref_description="SGN-E442474 [cSTA-33-N1]">
      <seq>gagcatcataattgccgcaattaggcgttagttcctgcattatcacacaaaccgacaatggcgggtgacgacgaaaagaagcataatggaactattcttgatctcaatgactacaccatcatgaaggagggagatgctgagattcttatgcatgccaaaaatgaagtcttctacaacaattcccatgtgaataacagagatatggctatagctgctttgaggacatttatatcacaacgaaagcaagagcatgacacagtgttagctatactaaccaaagctggaaataaggcacctaatgctaaagcggaaaacccaagtgattcagtgcatcataatggtgaatccaatgatggatctgaagtcttgaaagacgcataccatggtgaatcatctagcattccagtggaacagactaaaaatctacggggaaaaggccgagaagaactaaagcctgcacgagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="+" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="88234" stop="91275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88534" g_stop="88719" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88720" i_stop="90693" i_length="1974">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.081" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90694" g_stop="90975" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="468" r_length="282" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="+" ref_id="SGN-E442474" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E442474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88534" e_stop="88719"/>
          <exon e_start="90694" e_stop="90975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTTCATAATTGCCGCAATTAGGCGTTAGTTTCTCCATTATCACACAAACCGTCAATGGCGGGTGACAACGGAAACAAGCAGAATGGAACTTCTTTTGATCTCAATGACTTCACCATCATCAAAGAAGGAGATGCTGAGATTCTTATGCATGCCAAAAATGAAGTTTTCTACAACAATTCCCAGGTCCTTCTTTTTTCTTTTTTTTTCAGATTCTTATGCTTCATATGAAAGTGCTTATCTAGTTACCTATTTGCCTAAGCCTTACTGTAAGAATTAACTGGACAAGTTATCAAAAGAGTTTTTATTGCGACAAGACATGTGTTCAATTACAAATTAGTATATAGAAATTAAGGAAAAAATTCATTCAGGGTACTTCTAATGTAGCTATGCTGGTGGAATGGCTAATGCGTAGAATTTTTCCATCTGTCTATTTAGTCTGCCAATTGACTGATCTGCTATAGCTCTGTTGTGCTAATATTGCATCTACCAAGGTAGTCTTGTTAGCTATTGAATAATGGGTGAGTTTAACTAGATGATTTTAAGGAATAGAGACAGGGTGTGTGATCTTGGCTAGATACTTTGGGACAAACTTAGATACCACATGCACACAAGGAAGAGGGATAAGGATTAATTCTGCTCGAGTGTTCTCTTATTGTGAACCAACCTATTATATGTCGTTTTCGGTCAAAGTTTTTGTAAGTTCTACAATTTCTAGAATTTGCAATGTTTTGAATGTAGGTGCTTCTTGAATTATAGTTCTTGTAACGTGTGTGAGAGATAGACAGAACAACATTGCCAAAAGTGAAGAGTGTAGAAAAACAGTAAGGTCAAGCTCTACTCGGACTTTAACAGAAAGCACTATTGAAGTGCAATCTTTGGCGAAAAATCCTTAGATGAGGGAAAAAATTAAAAAGTTGGATGTAACTATGTTTATTATAAGATTAATCCAACATATCTATTTACAAACAATTGTGTAGATAATGAAATTGAAAAAAAAAAAACACTGTTCGTAGGGGTATTTACCAGGACGAACAAATAAATGAGCCCAAGATCAGAAGTGATATTGGATACCAATCACATTTGGGGAATGTCTCTGTATCGTATTCGTCTAGAGTGGAGCTTCTTAGCTGCTTGACTATCTCTCACGGGAACCCCAGACTCCACTGCCAAGGTGAATGCATAAACAAAAAAAGTCGTTTTCATTATGGTTTTACAGACGAAAATTACTTAGTATGTTCGTAAGCCAAGAGGTCAACAAGTCAAGTTTAACTACAATTACTTGAATGGCTTTTGGATAACATCCTTTTTCAAAATGTCATTTCTTTATCAAAATGTATCCTTCTTCGGCTCTGTGTGGCTTCAACTGTCAACATATTTTAGTTAATGATACACTAATTATTACTACAAACCTTGAGAAAATATTACGACAAAGGACGAATAAAAATACCGAGTTTGATTCAAAATGTTCATAATTCATCTCTTCATGAAGAATTACCAAACCATTTGATCCTTTGCTCAACTCTATGTCGCATCTGATTCTGACAGATGTAATTGCTTAAAGTCAACCTCTTTTTTCTTATTATTTTTTTCGGTTAACTTTCTTCTCGGTGAAAAAGAGGTAGTTGGGAACTATATTACATTTACTCATTTATTGGTGAAATCAGGTTTTATCTACCGTGGTGTGATTAAGTGTCCAACATAGGTACATTCTGTTTTAGTAATTTTCTGGAGGACTAAAAAGGATCTTGCAAATGTCATTCTTGCCACATGTCTACATCTCCATGTAACATGGGCTCAGAATGTAACTAGTACCTTCTTTTTAGGATAAACGGAGTAGTAGACATTTCCTTTGTTTTTGACTTTGTGACAGACTGACAGCTCAATTCATGGTAACTTACTCATGCAGGAATTTCCACCTAGTAAATATTTAGGACAGGGTAATTTAGCCCTTTTAAGATGACTATTGGCAACTTGTACGCAAATATCTAGTCCTCGATGGTCTTGGCATGCCACCCTGAACAATTCTTGCTTGTATGGTACTTTGTGGTTTATTAATAGCATTCAAAGTTACATCCCTTTATTCTCTATTCTATGTGGTAACATTTAAGGGCAGTGGTAGCCACCTTATTTTAGCTCATCAAAAACTACCTGCAACAGGTGAATAATAGAGACATGTCTATAGCTGTTTTGAGGACATTTATATCACAACGAAAGCTAGAACATGACGCAATGTTAGCTAGACGAACCAAGGCTGGAAATAAGGCACCTAATGCTAAAGTGGAAAACCCAGGTGATTCAGTGCAGCATAATGGTGAATCCACTGATGGATCGGAAGTCTTGAAAGACGCATCCCATGGTGAATCATCTAGCATTCCAGTGGAACAGAATAAAAATCTGCGGGGAAAAGGCCGAGAAGAACTAAAGCCTCCACGAGTTCTC</genome_strand>
        <mrna_strand>GAGCATCATAATTGCCGCAATTAGGCGTTAGTTCCTGCATTATCACACAAACCGACAATGGCGGGTGACGACGAAAAGAAGCATAATGGAACTATTCTTGATCTCAATGACTACACCATCATGAAGGAGGGAGATGCTGAGATTCTTATGCATGCCAAAAATGAAGTCTTCTACAACAATTCCCAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATAACAGAGATATGGCTATAGCTGCTTTGAGGACATTTATATCACAACGAAAGCAAGAGCATGACACAGTGTTAGCTATACTAACCAAAGCTGGAAATAAGGCACCTAATGCTAAAGCGGAAAACCCAAGTGATTCAGTGCATCATAATGGTGAATCCAATGATGGATCTGAAGTCTTGAAAGACGCATACCATGGTGAATCATCTAGCATTCCAGTGGAACAGACTAAAAATCTACGGGGAAAAGGCCGAGAAGAACTAAAGCCTGCACGAGTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E418637" ref_strand="+" ref_description="SGN-E418637 [STM-27-P10]">
      <seq>gagcatcataattgccgcaattaggcgttagttcctccattatcacacaaaccgtcaatggcgggtgacgacgaaaagaagcagaatggaacttcttttgatctcaatgacttcaccatcatcaaggagggagatgctgagattcttatgcatgccaaaaatgaagttttctacaacaattcccaggtgaataacagagatatgtctatagctgttttgaggacatttatatcacaacgaaagcaagagcatgacgcaatgttagctagacgaaccaaggctggaaataaggcacctaatgctaaagcggaaaacccaggtgattcagtgcagcataatggtgaatccaatgatggatctgaagtcttgaaagacgcatcccatggtgaatcatctagcattccagtggaacagactaaaaatctacggggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="+" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="88234" stop="91241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88534" g_stop="88719" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88720" i_stop="90693" i_length="1974">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.081" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90694" g_stop="90941" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="434" r_length="248" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="+" ref_id="SGN-E418637" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E418637" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88534" e_stop="88719"/>
          <exon e_start="90694" e_stop="90941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTTCATAATTGCCGCAATTAGGCGTTAGTTTCTCCATTATCACACAAACCGTCAATGGCGGGTGACAACGGAAACAAGCAGAATGGAACTTCTTTTGATCTCAATGACTTCACCATCATCAAAGAAGGAGATGCTGAGATTCTTATGCATGCCAAAAATGAAGTTTTCTACAACAATTCCCAGGTCCTTCTTTTTTCTTTTTTTTTCAGATTCTTATGCTTCATATGAAAGTGCTTATCTAGTTACCTATTTGCCTAAGCCTTACTGTAAGAATTAACTGGACAAGTTATCAAAAGAGTTTTTATTGCGACAAGACATGTGTTCAATTACAAATTAGTATATAGAAATTAAGGAAAAAATTCATTCAGGGTACTTCTAATGTAGCTATGCTGGTGGAATGGCTAATGCGTAGAATTTTTCCATCTGTCTATTTAGTCTGCCAATTGACTGATCTGCTATAGCTCTGTTGTGCTAATATTGCATCTACCAAGGTAGTCTTGTTAGCTATTGAATAATGGGTGAGTTTAACTAGATGATTTTAAGGAATAGAGACAGGGTGTGTGATCTTGGCTAGATACTTTGGGACAAACTTAGATACCACATGCACACAAGGAAGAGGGATAAGGATTAATTCTGCTCGAGTGTTCTCTTATTGTGAACCAACCTATTATATGTCGTTTTCGGTCAAAGTTTTTGTAAGTTCTACAATTTCTAGAATTTGCAATGTTTTGAATGTAGGTGCTTCTTGAATTATAGTTCTTGTAACGTGTGTGAGAGATAGACAGAACAACATTGCCAAAAGTGAAGAGTGTAGAAAAACAGTAAGGTCAAGCTCTACTCGGACTTTAACAGAAAGCACTATTGAAGTGCAATCTTTGGCGAAAAATCCTTAGATGAGGGAAAAAATTAAAAAGTTGGATGTAACTATGTTTATTATAAGATTAATCCAACATATCTATTTACAAACAATTGTGTAGATAATGAAATTGAAAAAAAAAAAACACTGTTCGTAGGGGTATTTACCAGGACGAACAAATAAATGAGCCCAAGATCAGAAGTGATATTGGATACCAATCACATTTGGGGAATGTCTCTGTATCGTATTCGTCTAGAGTGGAGCTTCTTAGCTGCTTGACTATCTCTCACGGGAACCCCAGACTCCACTGCCAAGGTGAATGCATAAACAAAAAAAGTCGTTTTCATTATGGTTTTACAGACGAAAATTACTTAGTATGTTCGTAAGCCAAGAGGTCAACAAGTCAAGTTTAACTACAATTACTTGAATGGCTTTTGGATAACATCCTTTTTCAAAATGTCATTTCTTTATCAAAATGTATCCTTCTTCGGCTCTGTGTGGCTTCAACTGTCAACATATTTTAGTTAATGATACACTAATTATTACTACAAACCTTGAGAAAATATTACGACAAAGGACGAATAAAAATACCGAGTTTGATTCAAAATGTTCATAATTCATCTCTTCATGAAGAATTACCAAACCATTTGATCCTTTGCTCAACTCTATGTCGCATCTGATTCTGACAGATGTAATTGCTTAAAGTCAACCTCTTTTTTCTTATTATTTTTTTCGGTTAACTTTCTTCTCGGTGAAAAAGAGGTAGTTGGGAACTATATTACATTTACTCATTTATTGGTGAAATCAGGTTTTATCTACCGTGGTGTGATTAAGTGTCCAACATAGGTACATTCTGTTTTAGTAATTTTCTGGAGGACTAAAAAGGATCTTGCAAATGTCATTCTTGCCACATGTCTACATCTCCATGTAACATGGGCTCAGAATGTAACTAGTACCTTCTTTTTAGGATAAACGGAGTAGTAGACATTTCCTTTGTTTTTGACTTTGTGACAGACTGACAGCTCAATTCATGGTAACTTACTCATGCAGGAATTTCCACCTAGTAAATATTTAGGACAGGGTAATTTAGCCCTTTTAAGATGACTATTGGCAACTTGTACGCAAATATCTAGTCCTCGATGGTCTTGGCATGCCACCCTGAACAATTCTTGCTTGTATGGTACTTTGTGGTTTATTAATAGCATTCAAAGTTACATCCCTTTATTCTCTATTCTATGTGGTAACATTTAAGGGCAGTGGTAGCCACCTTATTTTAGCTCATCAAAAACTACCTGCAACAGGTGAATAATAGAGACATGTCTATAGCTGTTTTGAGGACATTTATATCACAACGAAAGCTAGAACATGACGCAATGTTAGCTAGACGAACCAAGGCTGGAAATAAGGCACCTAATGCTAAAGTGGAAAACCCAGGTGATTCAGTGCAGCATAATGGTGAATCCACTGATGGATCGGAAGTCTTGAAAGACGCATCCCATGGTGAATCATCTAGCATTCCAGTGGAACAGAATAAAAATCTGCGGGGAAA</genome_strand>
        <mrna_strand>GAGCATCATAATTGCCGCAATTAGGCGTTAGTTCCTCCATTATCACACAAACCGTCAATGGCGGGTGACGACGAAAAGAAGCAGAATGGAACTTCTTTTGATCTCAATGACTTCACCATCATCAAGGAGGGAGATGCTGAGATTCTTATGCATGCCAAAAATGAAGTTTTCTACAACAATTCCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATAACAGAGATATGTCTATAGCTGTTTTGAGGACATTTATATCACAACGAAAGCAAGAGCATGACGCAATGTTAGCTAGACGAACCAAGGCTGGAAATAAGGCACCTAATGCTAAAGCGGAAAACCCAGGTGATTCAGTGCAGCATAATGGTGAATCCAATGATGGATCTGAAGTCTTGAAAGACGCATCCCATGGTGAATCATCTAGCATTCCAGTGGAACAGACTAAAAATCTACGGGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E209861" ref_strand="+" ref_description="SGN-E209861 [cLEC-52-A16]">
      <seq>cgcaattatgcgttagtttctccattatcacacaaaccgtcaatggcgggtgacaacggaaacaagcagaatggaacttcttttgatctcaatgacttcaccatcatcaaagaaggagatgctgagattcttatgcatgccaaaaatgaagttttctacaacaattcccaggtgaataatagagacatgtctatagctgttttgaggacatttatatcacaacgaaagctagaacatgacgcaatgttagctagacgaaccaaggctggaaataaggcacctaatgctaaagtggaaaacccaggtgattcagtgcagcataatggtgaatccactgatggatcggaagtcttgaaagacgcatcccatggtgaatcatctagcattccagtggaacagaataaaaatctgcggggaaaaggccgagaagaactaaagcctccacgagttctcgaggctctctcagcttctggattgagggctttaaggtatgctcgtgaagtagaaggaattagccaggtcgtggcccttgacaatgacaaagcctctgtggaagcttgcaggagaaacattaagtttaatggttcagtggcatgctctaaggtggaatctcaccttgctgatgcaagggtttatatgcttacccacccaaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="+" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="88249" stop="92006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88549" g_stop="88719" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88720" i_stop="90693" i_length="1974">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.081" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90694" g_stop="90978" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="456" r_length="285" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90979" i_stop="91074" i_length="96">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91075" g_stop="91162" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="544" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91163" i_stop="91595" i_length="433">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91596" g_stop="91706" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="655" r_length="111" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="+" ref_id="SGN-E209861" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209861" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88549" e_stop="88719"/>
          <exon e_start="90694" e_stop="90978"/>
          <exon e_start="91075" e_stop="91162"/>
          <exon e_start="91596" e_stop="91706"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAATTAGGCGTTAGTTTCTCCATTATCACACAAACCGTCAATGGCGGGTGACAACGGAAACAAGCAGAATGGAACTTCTTTTGATCTCAATGACTTCACCATCATCAAAGAAGGAGATGCTGAGATTCTTATGCATGCCAAAAATGAAGTTTTCTACAACAATTCCCAGGTCCTTCTTTTTTCTTTTTTTTTCAGATTCTTATGCTTCATATGAAAGTGCTTATCTAGTTACCTATTTGCCTAAGCCTTACTGTAAGAATTAACTGGACAAGTTATCAAAAGAGTTTTTATTGCGACAAGACATGTGTTCAATTACAAATTAGTATATAGAAATTAAGGAAAAAATTCATTCAGGGTACTTCTAATGTAGCTATGCTGGTGGAATGGCTAATGCGTAGAATTTTTCCATCTGTCTATTTAGTCTGCCAATTGACTGATCTGCTATAGCTCTGTTGTGCTAATATTGCATCTACCAAGGTAGTCTTGTTAGCTATTGAATAATGGGTGAGTTTAACTAGATGATTTTAAGGAATAGAGACAGGGTGTGTGATCTTGGCTAGATACTTTGGGACAAACTTAGATACCACATGCACACAAGGAAGAGGGATAAGGATTAATTCTGCTCGAGTGTTCTCTTATTGTGAACCAACCTATTATATGTCGTTTTCGGTCAAAGTTTTTGTAAGTTCTACAATTTCTAGAATTTGCAATGTTTTGAATGTAGGTGCTTCTTGAATTATAGTTCTTGTAACGTGTGTGAGAGATAGACAGAACAACATTGCCAAAAGTGAAGAGTGTAGAAAAACAGTAAGGTCAAGCTCTACTCGGACTTTAACAGAAAGCACTATTGAAGTGCAATCTTTGGCGAAAAATCCTTAGATGAGGGAAAAAATTAAAAAGTTGGATGTAACTATGTTTATTATAAGATTAATCCAACATATCTATTTACAAACAATTGTGTAGATAATGAAATTGAAAAAAAAAAAACACTGTTCGTAGGGGTATTTACCAGGACGAACAAATAAATGAGCCCAAGATCAGAAGTGATATTGGATACCAATCACATTTGGGGAATGTCTCTGTATCGTATTCGTCTAGAGTGGAGCTTCTTAGCTGCTTGACTATCTCTCACGGGAACCCCAGACTCCACTGCCAAGGTGAATGCATAAACAAAAAAAGTCGTTTTCATTATGGTTTTACAGACGAAAATTACTTAGTATGTTCGTAAGCCAAGAGGTCAACAAGTCAAGTTTAACTACAATTACTTGAATGGCTTTTGGATAACATCCTTTTTCAAAATGTCATTTCTTTATCAAAATGTATCCTTCTTCGGCTCTGTGTGGCTTCAACTGTCAACATATTTTAGTTAATGATACACTAATTATTACTACAAACCTTGAGAAAATATTACGACAAAGGACGAATAAAAATACCGAGTTTGATTCAAAATGTTCATAATTCATCTCTTCATGAAGAATTACCAAACCATTTGATCCTTTGCTCAACTCTATGTCGCATCTGATTCTGACAGATGTAATTGCTTAAAGTCAACCTCTTTTTTCTTATTATTTTTTTCGGTTAACTTTCTTCTCGGTGAAAAAGAGGTAGTTGGGAACTATATTACATTTACTCATTTATTGGTGAAATCAGGTTTTATCTACCGTGGTGTGATTAAGTGTCCAACATAGGTACATTCTGTTTTAGTAATTTTCTGGAGGACTAAAAAGGATCTTGCAAATGTCATTCTTGCCACATGTCTACATCTCCATGTAACATGGGCTCAGAATGTAACTAGTACCTTCTTTTTAGGATAAACGGAGTAGTAGACATTTCCTTTGTTTTTGACTTTGTGACAGACTGACAGCTCAATTCATGGTAACTTACTCATGCAGGAATTTCCACCTAGTAAATATTTAGGACAGGGTAATTTAGCCCTTTTAAGATGACTATTGGCAACTTGTACGCAAATATCTAGTCCTCGATGGTCTTGGCATGCCACCCTGAACAATTCTTGCTTGTATGGTACTTTGTGGTTTATTAATAGCATTCAAAGTTACATCCCTTTATTCTCTATTCTATGTGGTAACATTTAAGGGCAGTGGTAGCCACCTTATTTTAGCTCATCAAAAACTACCTGCAACAGGTGAATAATAGAGACATGTCTATAGCTGTTTTGAGGACATTTATATCACAACGAAAGCTAGAACATGACGCAATGTTAGCTAGACGAACCAAGGCTGGAAATAAGGCACCTAATGCTAAAGTGGAAAACCCAGGTGATTCAGTGCAGCATAATGGTGAATCCACTGATGGATCGGAAGTCTTGAAAGACGCATCCCATGGTGAATCATCTAGCATTCCAGTGGAACAGAATAAAAATCTGCGGGGAAAAGGCCGAGAAGAACTAAAGCCTCCACGAGTTCTCGAGGTATATTGGCCTGTTTTGTTGATTATTAAACGCTTATCAAAAATGAGGTTGTTGCTGTGGTTGACCAACATTTTTTCTTTCAATGTGACTTAATAGGCTCTCTCAGCTTCTGGATTGAGGGCTTTAAGGTATGCTCGTGAAGTAGAAGGAATTAGCCAGGTCGTGGCCCTTGACAATGACAAAGGTAATTCTATCTCAGTTTAGGGGGTGCTGCATAAAATGTCTAGCTGTTACGACACTAACCTTCACTGCCAACCATGGTAAAAGAAAATGAAATGCATCTCTCTGGTCAAGAGATCACTGAGCAGTCACAAAAGTAAGAATGTCTGATGGAATGGATTTGAAACATCTAATCTAAGAGTGTGTTTTATATAAATCATTCAGGTACTGGCTTTAATGTTTAGGTATTAAAACTGTAAATTAATGCGAGGATAGAAGTGAATTCCTTATTGTCGTGATAAATATGAGAAAAACGGTGGCATAATTCAGAGAATTTTATATAAGCTTTAACCAAAAAATTTACTTGTCTTGTTTCAAAATATCTATATAATAACGTGATACAGATATTACTTCTAATGTCCAATCCAGTATTTGAGTAGGTATTCCTTATGTTGCAGCCTCTGTGGAAGCTTGCAGGAGAAACATTAAGTTTAATGGTTCAGTGGCATGCTCTAAGGTGGAATCTCACCTTGCTGATGCAAGGGTTTATATGCTTACCCACCCAAACG</genome_strand>
        <mrna_strand>CGCAATTATGCGTTAGTTTCTCCATTATCACACAAACCGTCAATGGCGGGTGACAACGGAAACAAGCAGAATGGAACTTCTTTTGATCTCAATGACTTCACCATCATCAAAGAAGGAGATGCTGAGATTCTTATGCATGCCAAAAATGAAGTTTTCTACAACAATTCCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATAATAGAGACATGTCTATAGCTGTTTTGAGGACATTTATATCACAACGAAAGCTAGAACATGACGCAATGTTAGCTAGACGAACCAAGGCTGGAAATAAGGCACCTAATGCTAAAGTGGAAAACCCAGGTGATTCAGTGCAGCATAATGGTGAATCCACTGATGGATCGGAAGTCTTGAAAGACGCATCCCATGGTGAATCATCTAGCATTCCAGTGGAACAGAATAAAAATCTGCGGGGAAAAGGCCGAGAAGAACTAAAGCCTCCACGAGTTCTCGAG................................................................................................GCTCTCTCAGCTTCTGGATTGAGGGCTTTAAGGTATGCTCGTGAAGTAGAAGGAATTAGCCAGGTCGTGGCCCTTGACAATGACAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCTGTGGAAGCTTGCAGGAGAAACATTAAGTTTAATGGTTCAGTGGCATGCTCTAAGGTGGAATCTCACCTTGCTGATGCAAGGGTTTATATGCTTACCCACCCAAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E247561" ref_strand="+" ref_description="SGN-E247561 [cLEF-42-B5]">
      <seq>gcaattaggcgttagtttctccattatcacacaaaccgtcaatggcgggtgacaacggaaacaagcagaatggaacttcttttgatctcaatgacttcaccatcatcaaagaaggagatgctgagattcttatgcatgccaaaaatgaagttttctacaacaattcccaggtgaataatagagacatgtctatagctgttttgaggacatttatatcacaacgaaagctagaacatgacgcaatgttagctagacgaaccaaggctggaaataaggcacctaatgctaaagtggaaaacccaggtgattcagtgcagcataatggtgaatccactgatggatcggaagtcttgaaagacgcatcccatggtgaatcatctagcattccagtggaacagaataaaaatctgcggggaaaaggccgagaagaactaaagcctccacgagttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="+" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="88250" stop="91274"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88550" g_stop="88719" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88720" i_stop="90693" i_length="1974">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.081" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90694" g_stop="90974" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="451" r_length="281" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="+" ref_id="SGN-E247561" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247561" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88550" e_stop="88719"/>
          <exon e_start="90694" e_stop="90974"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATTAGGCGTTAGTTTCTCCATTATCACACAAACCGTCAATGGCGGGTGACAACGGAAACAAGCAGAATGGAACTTCTTTTGATCTCAATGACTTCACCATCATCAAAGAAGGAGATGCTGAGATTCTTATGCATGCCAAAAATGAAGTTTTCTACAACAATTCCCAGGTCCTTCTTTTTTCTTTTTTTTTCAGATTCTTATGCTTCATATGAAAGTGCTTATCTAGTTACCTATTTGCCTAAGCCTTACTGTAAGAATTAACTGGACAAGTTATCAAAAGAGTTTTTATTGCGACAAGACATGTGTTCAATTACAAATTAGTATATAGAAATTAAGGAAAAAATTCATTCAGGGTACTTCTAATGTAGCTATGCTGGTGGAATGGCTAATGCGTAGAATTTTTCCATCTGTCTATTTAGTCTGCCAATTGACTGATCTGCTATAGCTCTGTTGTGCTAATATTGCATCTACCAAGGTAGTCTTGTTAGCTATTGAATAATGGGTGAGTTTAACTAGATGATTTTAAGGAATAGAGACAGGGTGTGTGATCTTGGCTAGATACTTTGGGACAAACTTAGATACCACATGCACACAAGGAAGAGGGATAAGGATTAATTCTGCTCGAGTGTTCTCTTATTGTGAACCAACCTATTATATGTCGTTTTCGGTCAAAGTTTTTGTAAGTTCTACAATTTCTAGAATTTGCAATGTTTTGAATGTAGGTGCTTCTTGAATTATAGTTCTTGTAACGTGTGTGAGAGATAGACAGAACAACATTGCCAAAAGTGAAGAGTGTAGAAAAACAGTAAGGTCAAGCTCTACTCGGACTTTAACAGAAAGCACTATTGAAGTGCAATCTTTGGCGAAAAATCCTTAGATGAGGGAAAAAATTAAAAAGTTGGATGTAACTATGTTTATTATAAGATTAATCCAACATATCTATTTACAAACAATTGTGTAGATAATGAAATTGAAAAAAAAAAAACACTGTTCGTAGGGGTATTTACCAGGACGAACAAATAAATGAGCCCAAGATCAGAAGTGATATTGGATACCAATCACATTTGGGGAATGTCTCTGTATCGTATTCGTCTAGAGTGGAGCTTCTTAGCTGCTTGACTATCTCTCACGGGAACCCCAGACTCCACTGCCAAGGTGAATGCATAAACAAAAAAAGTCGTTTTCATTATGGTTTTACAGACGAAAATTACTTAGTATGTTCGTAAGCCAAGAGGTCAACAAGTCAAGTTTAACTACAATTACTTGAATGGCTTTTGGATAACATCCTTTTTCAAAATGTCATTTCTTTATCAAAATGTATCCTTCTTCGGCTCTGTGTGGCTTCAACTGTCAACATATTTTAGTTAATGATACACTAATTATTACTACAAACCTTGAGAAAATATTACGACAAAGGACGAATAAAAATACCGAGTTTGATTCAAAATGTTCATAATTCATCTCTTCATGAAGAATTACCAAACCATTTGATCCTTTGCTCAACTCTATGTCGCATCTGATTCTGACAGATGTAATTGCTTAAAGTCAACCTCTTTTTTCTTATTATTTTTTTCGGTTAACTTTCTTCTCGGTGAAAAAGAGGTAGTTGGGAACTATATTACATTTACTCATTTATTGGTGAAATCAGGTTTTATCTACCGTGGTGTGATTAAGTGTCCAACATAGGTACATTCTGTTTTAGTAATTTTCTGGAGGACTAAAAAGGATCTTGCAAATGTCATTCTTGCCACATGTCTACATCTCCATGTAACATGGGCTCAGAATGTAACTAGTACCTTCTTTTTAGGATAAACGGAGTAGTAGACATTTCCTTTGTTTTTGACTTTGTGACAGACTGACAGCTCAATTCATGGTAACTTACTCATGCAGGAATTTCCACCTAGTAAATATTTAGGACAGGGTAATTTAGCCCTTTTAAGATGACTATTGGCAACTTGTACGCAAATATCTAGTCCTCGATGGTCTTGGCATGCCACCCTGAACAATTCTTGCTTGTATGGTACTTTGTGGTTTATTAATAGCATTCAAAGTTACATCCCTTTATTCTCTATTCTATGTGGTAACATTTAAGGGCAGTGGTAGCCACCTTATTTTAGCTCATCAAAAACTACCTGCAACAGGTGAATAATAGAGACATGTCTATAGCTGTTTTGAGGACATTTATATCACAACGAAAGCTAGAACATGACGCAATGTTAGCTAGACGAACCAAGGCTGGAAATAAGGCACCTAATGCTAAAGTGGAAAACCCAGGTGATTCAGTGCAGCATAATGGTGAATCCACTGATGGATCGGAAGTCTTGAAAGACGCATCCCATGGTGAATCATCTAGCATTCCAGTGGAACAGAATAAAAATCTGCGGGGAAAAGGCCGAGAAGAACTAAAGCCTCCACGAGTTCT</genome_strand>
        <mrna_strand>GCAATTAGGCGTTAGTTTCTCCATTATCACACAAACCGTCAATGGCGGGTGACAACGGAAACAAGCAGAATGGAACTTCTTTTGATCTCAATGACTTCACCATCATCAAAGAAGGAGATGCTGAGATTCTTATGCATGCCAAAAATGAAGTTTTCTACAACAATTCCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATAATAGAGACATGTCTATAGCTGTTTTGAGGACATTTATATCACAACGAAAGCTAGAACATGACGCAATGTTAGCTAGACGAACCAAGGCTGGAAATAAGGCACCTAATGCTAAAGTGGAAAACCCAGGTGATTCAGTGCAGCATAATGGTGAATCCACTGATGGATCGGAAGTCTTGAAAGACGCATCCCATGGTGAATCATCTAGCATTCCAGTGGAACAGAATAAAAATCTGCGGGGAAAAGGCCGAGAAGAACTAAAGCCTCCACGAGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E315677" ref_strand="+" ref_description="SGN-E315677 [cTOA-22-L18]">
      <seq>gttagtttctccattatcacacaaaccgtcaatggcgggtgacaacggaaacaagcagaatggaacttcttttgatctcaatgacttcaccatcatcaaagaaggagatgctgagattcttatgcatgccaaaaatgaagttttctacaacaattcccaggtgaataatagagacatgtctatagctgttttgaggacatttatatcacaacgaaagctagaacatgacgcaatgttagctagacgaaccaaggctggaaataaggcacctaatgctaaagtggaaaacccaggtgattcagtgcagcataatggtgaatccactgatggatcggaagtcttgaaagacgcatcccatggtgaatcatctagcattccagtggaacagaataaaaatctgcggggaaaaggccgagaagaactaaagcctccacgagttctcgaggctctctcagcttctggattgagggctttaaggtatgctcgtgaagtacaaggaattagccaggtcgtggcccttgacaatgacaaagcctctgtggaagcttgcangagaaacattaagtttaatggctcagtggcatgctctaaagtggaatctcaccttgctgatgcaaaggtttatatgctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="+" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="88260" stop="91994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88560" g_stop="88719" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88720" i_stop="90693" i_length="1974">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.081" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90694" g_stop="90978" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="445" r_length="285" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90979" i_stop="91074" i_length="96">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91075" g_stop="91162" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="533" r_length="88" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91163" i_stop="91595" i_length="433">
            <donor d_prob="0.888" d_score="0.98"/>
            <acceptor a_prob="0.952" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91596" g_stop="91694" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="632" r_length="99" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="+" ref_id="SGN-E315677" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315677" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88560" e_stop="88719"/>
          <exon e_start="90694" e_stop="90978"/>
          <exon e_start="91075" e_stop="91162"/>
          <exon e_start="91596" e_stop="91694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAGTTTCTCCATTATCACACAAACCGTCAATGGCGGGTGACAACGGAAACAAGCAGAATGGAACTTCTTTTGATCTCAATGACTTCACCATCATCAAAGAAGGAGATGCTGAGATTCTTATGCATGCCAAAAATGAAGTTTTCTACAACAATTCCCAGGTCCTTCTTTTTTCTTTTTTTTTCAGATTCTTATGCTTCATATGAAAGTGCTTATCTAGTTACCTATTTGCCTAAGCCTTACTGTAAGAATTAACTGGACAAGTTATCAAAAGAGTTTTTATTGCGACAAGACATGTGTTCAATTACAAATTAGTATATAGAAATTAAGGAAAAAATTCATTCAGGGTACTTCTAATGTAGCTATGCTGGTGGAATGGCTAATGCGTAGAATTTTTCCATCTGTCTATTTAGTCTGCCAATTGACTGATCTGCTATAGCTCTGTTGTGCTAATATTGCATCTACCAAGGTAGTCTTGTTAGCTATTGAATAATGGGTGAGTTTAACTAGATGATTTTAAGGAATAGAGACAGGGTGTGTGATCTTGGCTAGATACTTTGGGACAAACTTAGATACCACATGCACACAAGGAAGAGGGATAAGGATTAATTCTGCTCGAGTGTTCTCTTATTGTGAACCAACCTATTATATGTCGTTTTCGGTCAAAGTTTTTGTAAGTTCTACAATTTCTAGAATTTGCAATGTTTTGAATGTAGGTGCTTCTTGAATTATAGTTCTTGTAACGTGTGTGAGAGATAGACAGAACAACATTGCCAAAAGTGAAGAGTGTAGAAAAACAGTAAGGTCAAGCTCTACTCGGACTTTAACAGAAAGCACTATTGAAGTGCAATCTTTGGCGAAAAATCCTTAGATGAGGGAAAAAATTAAAAAGTTGGATGTAACTATGTTTATTATAAGATTAATCCAACATATCTATTTACAAACAATTGTGTAGATAATGAAATTGAAAAAAAAAAAACACTGTTCGTAGGGGTATTTACCAGGACGAACAAATAAATGAGCCCAAGATCAGAAGTGATATTGGATACCAATCACATTTGGGGAATGTCTCTGTATCGTATTCGTCTAGAGTGGAGCTTCTTAGCTGCTTGACTATCTCTCACGGGAACCCCAGACTCCACTGCCAAGGTGAATGCATAAACAAAAAAAGTCGTTTTCATTATGGTTTTACAGACGAAAATTACTTAGTATGTTCGTAAGCCAAGAGGTCAACAAGTCAAGTTTAACTACAATTACTTGAATGGCTTTTGGATAACATCCTTTTTCAAAATGTCATTTCTTTATCAAAATGTATCCTTCTTCGGCTCTGTGTGGCTTCAACTGTCAACATATTTTAGTTAATGATACACTAATTATTACTACAAACCTTGAGAAAATATTACGACAAAGGACGAATAAAAATACCGAGTTTGATTCAAAATGTTCATAATTCATCTCTTCATGAAGAATTACCAAACCATTTGATCCTTTGCTCAACTCTATGTCGCATCTGATTCTGACAGATGTAATTGCTTAAAGTCAACCTCTTTTTTCTTATTATTTTTTTCGGTTAACTTTCTTCTCGGTGAAAAAGAGGTAGTTGGGAACTATATTACATTTACTCATTTATTGGTGAAATCAGGTTTTATCTACCGTGGTGTGATTAAGTGTCCAACATAGGTACATTCTGTTTTAGTAATTTTCTGGAGGACTAAAAAGGATCTTGCAAATGTCATTCTTGCCACATGTCTACATCTCCATGTAACATGGGCTCAGAATGTAACTAGTACCTTCTTTTTAGGATAAACGGAGTAGTAGACATTTCCTTTGTTTTTGACTTTGTGACAGACTGACAGCTCAATTCATGGTAACTTACTCATGCAGGAATTTCCACCTAGTAAATATTTAGGACAGGGTAATTTAGCCCTTTTAAGATGACTATTGGCAACTTGTACGCAAATATCTAGTCCTCGATGGTCTTGGCATGCCACCCTGAACAATTCTTGCTTGTATGGTACTTTGTGGTTTATTAATAGCATTCAAAGTTACATCCCTTTATTCTCTATTCTATGTGGTAACATTTAAGGGCAGTGGTAGCCACCTTATTTTAGCTCATCAAAAACTACCTGCAACAGGTGAATAATAGAGACATGTCTATAGCTGTTTTGAGGACATTTATATCACAACGAAAGCTAGAACATGACGCAATGTTAGCTAGACGAACCAAGGCTGGAAATAAGGCACCTAATGCTAAAGTGGAAAACCCAGGTGATTCAGTGCAGCATAATGGTGAATCCACTGATGGATCGGAAGTCTTGAAAGACGCATCCCATGGTGAATCATCTAGCATTCCAGTGGAACAGAATAAAAATCTGCGGGGAAAAGGCCGAGAAGAACTAAAGCCTCCACGAGTTCTCGAGGTATATTGGCCTGTTTTGTTGATTATTAAACGCTTATCAAAAATGAGGTTGTTGCTGTGGTTGACCAACATTTTTTCTTTCAATGTGACTTAATAGGCTCTCTCAGCTTCTGGATTGAGGGCTTTAAGGTATGCTCGTGAAGTAGAAGGAATTAGCCAGGTCGTGGCCCTTGACAATGACAAAGGTAATTCTATCTCAGTTTAGGGGGTGCTGCATAAAATGTCTAGCTGTTACGACACTAACCTTCACTGCCAACCATGGTAAAAGAAAATGAAATGCATCTCTCTGGTCAAGAGATCACTGAGCAGTCACAAAAGTAAGAATGTCTGATGGAATGGATTTGAAACATCTAATCTAAGAGTGTGTTTTATATAAATCATTCAGGTACTGGCTTTAATGTTTAGGTATTAAAACTGTAAATTAATGCGAGGATAGAAGTGAATTCCTTATTGTCGTGATAAATATGAGAAAAACGGTGGCATAATTCAGAGAATTTTATATAAGCTTTAACCAAAAAATTTACTTGTCTTGTTTCAAAATATCTATATAATAACGTGATACAGATATTACTTCTAATGTCCAATCCAGTATTTGAGTAGGTATTCCTTATGTTGCAGCCTCTGTGGAAGCTTGCAGGAGAAACATTAAGTTTAATGGTTCAGTGGCATGCTCTAAGGTGGAATCTCACCTTGCTGATGCAAGGGTTTATATGCTTA</genome_strand>
        <mrna_strand>GTTAGTTTCTCCATTATCACACAAACCGTCAATGGCGGGTGACAACGGAAACAAGCAGAATGGAACTTCTTTTGATCTCAATGACTTCACCATCATCAAAGAAGGAGATGCTGAGATTCTTATGCATGCCAAAAATGAAGTTTTCTACAACAATTCCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATAATAGAGACATGTCTATAGCTGTTTTGAGGACATTTATATCACAACGAAAGCTAGAACATGACGCAATGTTAGCTAGACGAACCAAGGCTGGAAATAAGGCACCTAATGCTAAAGTGGAAAACCCAGGTGATTCAGTGCAGCATAATGGTGAATCCACTGATGGATCGGAAGTCTTGAAAGACGCATCCCATGGTGAATCATCTAGCATTCCAGTGGAACAGAATAAAAATCTGCGGGGAAAAGGCCGAGAAGAACTAAAGCCTCCACGAGTTCTCGAG................................................................................................GCTCTCTCAGCTTCTGGATTGAGGGCTTTAAGGTATGCTCGTGAAGTACAAGGAATTAGCCAGGTCGTGGCCCTTGACAATGACAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCTGTGGAAGCTTGCANGAGAAACATTAAGTTTAATGGCTCAGTGGCATGCTCTAAAGTGGAATCTCACCTTGCTGATGCAAAGGTTTATATGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E457706" ref_strand="+" ref_description="SGN-E457706 [cPRO-3-B7]">
      <seq>gttagttcctccattatcacacaaaccgtcaatggcgggtgacgacgaaaagaagcagaatggaacttcttttgatctcaatgacttcaccatcatcaaggagggagatgctgagattcttatgcatgccaaaaatgaagttttctacaacaattcccaggtgaataacagagatatgtctatagctgttttgaggacatttatatcacaacgaaagcaagagcatgacgcaatgttagctagacgaaccaaggctggaaataaggcacctaatgctaaagcggaaaacccacgtgattcagtgcagcataatggtgaatccaatgatggatctgaagtcttgaaagacgcatcccatggtgaatcatctagcattccactggaacagactaaaaatctaccgggaataggccgagaagaactaaagcctccacgagttctcgaggctctctcaacttctggattgaaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="+" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="88260" stop="91284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88560" g_stop="88719" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88720" i_stop="90693" i_length="1974">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.081" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90694" g_stop="90978" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="445" r_length="285" r_score="0.954"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90979" i_stop="91074" i_length="96">
            <donor d_prob="0.988" d_score="0.94"/>
            <acceptor a_prob="0.982" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91075" g_stop="91100" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="471" r_length="26" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="+" ref_id="SGN-E457706" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E457706" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88560" e_stop="88719"/>
          <exon e_start="90694" e_stop="90978"/>
          <exon e_start="91075" e_stop="91100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAGTTTCTCCATTATCACACAAACCGTCAATGGCGGGTGACAACGGAAACAAGCAGAATGGAACTTCTTTTGATCTCAATGACTTCACCATCATCAAAGAAGGAGATGCTGAGATTCTTATGCATGCCAAAAATGAAGTTTTCTACAACAATTCCCAGGTCCTTCTTTTTTCTTTTTTTTTCAGATTCTTATGCTTCATATGAAAGTGCTTATCTAGTTACCTATTTGCCTAAGCCTTACTGTAAGAATTAACTGGACAAGTTATCAAAAGAGTTTTTATTGCGACAAGACATGTGTTCAATTACAAATTAGTATATAGAAATTAAGGAAAAAATTCATTCAGGGTACTTCTAATGTAGCTATGCTGGTGGAATGGCTAATGCGTAGAATTTTTCCATCTGTCTATTTAGTCTGCCAATTGACTGATCTGCTATAGCTCTGTTGTGCTAATATTGCATCTACCAAGGTAGTCTTGTTAGCTATTGAATAATGGGTGAGTTTAACTAGATGATTTTAAGGAATAGAGACAGGGTGTGTGATCTTGGCTAGATACTTTGGGACAAACTTAGATACCACATGCACACAAGGAAGAGGGATAAGGATTAATTCTGCTCGAGTGTTCTCTTATTGTGAACCAACCTATTATATGTCGTTTTCGGTCAAAGTTTTTGTAAGTTCTACAATTTCTAGAATTTGCAATGTTTTGAATGTAGGTGCTTCTTGAATTATAGTTCTTGTAACGTGTGTGAGAGATAGACAGAACAACATTGCCAAAAGTGAAGAGTGTAGAAAAACAGTAAGGTCAAGCTCTACTCGGACTTTAACAGAAAGCACTATTGAAGTGCAATCTTTGGCGAAAAATCCTTAGATGAGGGAAAAAATTAAAAAGTTGGATGTAACTATGTTTATTATAAGATTAATCCAACATATCTATTTACAAACAATTGTGTAGATAATGAAATTGAAAAAAAAAAAACACTGTTCGTAGGGGTATTTACCAGGACGAACAAATAAATGAGCCCAAGATCAGAAGTGATATTGGATACCAATCACATTTGGGGAATGTCTCTGTATCGTATTCGTCTAGAGTGGAGCTTCTTAGCTGCTTGACTATCTCTCACGGGAACCCCAGACTCCACTGCCAAGGTGAATGCATAAACAAAAAAAGTCGTTTTCATTATGGTTTTACAGACGAAAATTACTTAGTATGTTCGTAAGCCAAGAGGTCAACAAGTCAAGTTTAACTACAATTACTTGAATGGCTTTTGGATAACATCCTTTTTCAAAATGTCATTTCTTTATCAAAATGTATCCTTCTTCGGCTCTGTGTGGCTTCAACTGTCAACATATTTTAGTTAATGATACACTAATTATTACTACAAACCTTGAGAAAATATTACGACAAAGGACGAATAAAAATACCGAGTTTGATTCAAAATGTTCATAATTCATCTCTTCATGAAGAATTACCAAACCATTTGATCCTTTGCTCAACTCTATGTCGCATCTGATTCTGACAGATGTAATTGCTTAAAGTCAACCTCTTTTTTCTTATTATTTTTTTCGGTTAACTTTCTTCTCGGTGAAAAAGAGGTAGTTGGGAACTATATTACATTTACTCATTTATTGGTGAAATCAGGTTTTATCTACCGTGGTGTGATTAAGTGTCCAACATAGGTACATTCTGTTTTAGTAATTTTCTGGAGGACTAAAAAGGATCTTGCAAATGTCATTCTTGCCACATGTCTACATCTCCATGTAACATGGGCTCAGAATGTAACTAGTACCTTCTTTTTAGGATAAACGGAGTAGTAGACATTTCCTTTGTTTTTGACTTTGTGACAGACTGACAGCTCAATTCATGGTAACTTACTCATGCAGGAATTTCCACCTAGTAAATATTTAGGACAGGGTAATTTAGCCCTTTTAAGATGACTATTGGCAACTTGTACGCAAATATCTAGTCCTCGATGGTCTTGGCATGCCACCCTGAACAATTCTTGCTTGTATGGTACTTTGTGGTTTATTAATAGCATTCAAAGTTACATCCCTTTATTCTCTATTCTATGTGGTAACATTTAAGGGCAGTGGTAGCCACCTTATTTTAGCTCATCAAAAACTACCTGCAACAGGTGAATAATAGAGACATGTCTATAGCTGTTTTGAGGACATTTATATCACAACGAAAGCTAGAACATGACGCAATGTTAGCTAGACGAACCAAGGCTGGAAATAAGGCACCTAATGCTAAAGTGGAAAACCCAGGTGATTCAGTGCAGCATAATGGTGAATCCACTGATGGATCGGAAGTCTTGAAAGACGCATCCCATGGTGAATCATCTAGCATTCCAGTGGAACAGAATAAAAATCTGCGGGGAAAAGGCCGAGAAGAACTAAAGCCTCCACGAGTTCTCGAGGTATATTGGCCTGTTTTGTTGATTATTAAACGCTTATCAAAAATGAGGTTGTTGCTGTGGTTGACCAACATTTTTTCTTTCAATGTGACTTAATAGGCTCTCTCAGCTTCTGGATTGAGGGC</genome_strand>
        <mrna_strand>GTTAGTTCCTCCATTATCACACAAACCGTCAATGGCGGGTGACGACGAAAAGAAGCAGAATGGAACTTCTTTTGATCTCAATGACTTCACCATCATCAAGGAGGGAGATGCTGAGATTCTTATGCATGCCAAAAATGAAGTTTTCTACAACAATTCCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATAACAGAGATATGTCTATAGCTGTTTTGAGGACATTTATATCACAACGAAAGCAAGAGCATGACGCAATGTTAGCTAGACGAACCAAGGCTGGAAATAAGGCACCTAATGCTAAAGCGGAAAACCCACGTGATTCAGTGCAGCATAATGGTGAATCCAATGATGGATCTGAAGTCTTGAAAGACGCATCCCATGGTGAATCATCTAGCATTCCACTGGAACAGACTAAAAATCTACCGGGAATAGGCCGAGAAGAACTAAAGCCTCCACGAGTTCTCGAG................................................................................................GCTCTCTCAACTTCTGGATTGAAGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E207615" ref_strand="+" ref_description="SGN-E207615 [cLEC-32-G18]">
      <seq>aaggctggaaataaggcacctaatgctaaagtggaaaacccaggtgattcagtgcagcataatggtgaatccactgatggatcggaagtcttgaaagacgcatcccatggtgaatcatctagcattccagtggaacagaataaaaatctgcggggaaaaggccgagaagaactaaagcctccacgagttctcgaggctctctcagcttctggattgagggctttaaggtatgctcgtgaagtagaaggaattagccaggtcgtggcccttgacaatgacaaagcctctgtggaagcttgcaggagaaacattaagtttaatggttcagtggcatgctctaaggtggaatctcaccttgctgatgcaagggtttatatgcttacccacccaaacgaatttgatgtggttgatctcgatccttatggagcaccttctgtgttcttagactcagcagtccaatctgttgctgatggaggaatgttgatgtgtactgcaactgatatggcagtcttatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="+" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="90484" stop="92346"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90784" g_stop="90978" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90979" i_stop="91074" i_length="96">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91075" g_stop="91162" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="283" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91163" i_stop="91595" i_length="433">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91596" g_stop="91717" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="405" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91718" i_stop="91934" i_length="217">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91935" g_stop="92046" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="517" r_length="112" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="+" ref_id="SGN-E207615" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207615" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90784" e_stop="90978"/>
          <exon e_start="91075" e_stop="91162"/>
          <exon e_start="91596" e_stop="91717"/>
          <exon e_start="91935" e_stop="92046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGCTGGAAATAAGGCACCTAATGCTAAAGTGGAAAACCCAGGTGATTCAGTGCAGCATAATGGTGAATCCACTGATGGATCGGAAGTCTTGAAAGACGCATCCCATGGTGAATCATCTAGCATTCCAGTGGAACAGAATAAAAATCTGCGGGGAAAAGGCCGAGAAGAACTAAAGCCTCCACGAGTTCTCGAGGTATATTGGCCTGTTTTGTTGATTATTAAACGCTTATCAAAAATGAGGTTGTTGCTGTGGTTGACCAACATTTTTTCTTTCAATGTGACTTAATAGGCTCTCTCAGCTTCTGGATTGAGGGCTTTAAGGTATGCTCGTGAAGTAGAAGGAATTAGCCAGGTCGTGGCCCTTGACAATGACAAAGGTAATTCTATCTCAGTTTAGGGGGTGCTGCATAAAATGTCTAGCTGTTACGACACTAACCTTCACTGCCAACCATGGTAAAAGAAAATGAAATGCATCTCTCTGGTCAAGAGATCACTGAGCAGTCACAAAAGTAAGAATGTCTGATGGAATGGATTTGAAACATCTAATCTAAGAGTGTGTTTTATATAAATCATTCAGGTACTGGCTTTAATGTTTAGGTATTAAAACTGTAAATTAATGCGAGGATAGAAGTGAATTCCTTATTGTCGTGATAAATATGAGAAAAACGGTGGCATAATTCAGAGAATTTTATATAAGCTTTAACCAAAAAATTTACTTGTCTTGTTTCAAAATATCTATATAATAACGTGATACAGATATTACTTCTAATGTCCAATCCAGTATTTGAGTAGGTATTCCTTATGTTGCAGCCTCTGTGGAAGCTTGCAGGAGAAACATTAAGTTTAATGGTTCAGTGGCATGCTCTAAGGTGGAATCTCACCTTGCTGATGCAAGGGTTTATATGCTTACCCACCCAAACGAATTTGATGTGGTATGAATATACAATAAATTATCATATTTATATTCTTCTGAACTTTTAATGAATGAAAGTTGTTCTTTGGTGCTGGTTTAGTAAGTCAACCATGTTCAGGATATTTAGTTTGCACATTAAATTTCTTATCCTGGGTTACTTGCGTGTAAAATAATTTTTTGAATATCTATTTCAAGCTGAGCTTTTATTCATACATTTTGGGTTAGTGTTGTTTCAGGTTGATCTCGATCCTTATGGAGCACCTTCTGTGTTCTTAGACTCAGCAGTCCAATCTGTTGCTGATGGAGGAATGTTGATGTGTACTGCAACTGATATGGCAGTCTTATGTG</genome_strand>
        <mrna_strand>AAGGCTGGAAATAAGGCACCTAATGCTAAAGTGGAAAACCCAGGTGATTCAGTGCAGCATAATGGTGAATCCACTGATGGATCGGAAGTCTTGAAAGACGCATCCCATGGTGAATCATCTAGCATTCCAGTGGAACAGAATAAAAATCTGCGGGGAAAAGGCCGAGAAGAACTAAAGCCTCCACGAGTTCTCGAG................................................................................................GCTCTCTCAGCTTCTGGATTGAGGGCTTTAAGGTATGCTCGTGAAGTAGAAGGAATTAGCCAGGTCGTGGCCCTTGACAATGACAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCTGTGGAAGCTTGCAGGAGAAACATTAAGTTTAATGGTTCAGTGGCATGCTCTAAGGTGGAATCTCACCTTGCTGATGCAAGGGTTTATATGCTTACCCACCCAAACGAATTTGATGTG.........................................................................................................................................................................................................................GTTGATCTCGATCCTTATGGAGCACCTTCTGTGTTCTTAGACTCAGCAGTCCAATCTGTTGCTGATGGAGGAATGTTGATGTGTACTGCAACTGATATGGCAGTCTTATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E698487" ref_strand="+" ref_description="SGN-E698487 [FA06CA11]">
      <seq>cacgttcgtgaagtagaaggaattagccaggtcgtggcccttgacaatgacaaagcctctgtggaagcttgcaggagaaacattaagtttaatggttcagtggcatgctctaaggtggaatctcaccttgctgatgcaagggtttatatgcttacccacccaaacgaatttgatgtggttgatctcgatccttatggagcaccttctgtgttcttagactcagcagtccaatctgttgctgatggaggaatgttgatgtgtactgcaactgatatggcagtcttatgtgcagcaaatggagaagtttgctattccaaatatggctcctatcctttgagaggaaaatattgtcatgaaatggctttgcggatccttcttgcatctattgagagccatgcaaatcgatataagagatatatagttccagtattatctgttcagatggatttctatgttcgcgtttttgttcgtatatacacttctgcaagtgatgtgaaaaatactcctttgaagctctcatatgtctatcaatgcattggctgcgactcatttcatcttcagacagttgggaggacagtctcaaaggataagagtgtccgatgcctccctggatttggccctgcagttcctcaagagtgtagtgattgtggtaagaaattcaacatgggtggacccatatggtctgcccccattcatgatcaagaatgggtagctgccatgcttgcaaatgtgaaatcaatgaaagaacgctatcctgcttatgagcggatctctgctgtattgacaactatatcaaaggaactacctgatattcctctgtttctgagtttgcacaatctctgtgcaacactaaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="+" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="90809" stop="94949"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91108" g_stop="91162" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91163" i_stop="91595" i_length="433">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91596" g_stop="91717" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="177" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91718" i_stop="91934" i_length="217">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91935" g_stop="92074" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="317" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92075" i_stop="92158" i_length="84">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.111" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92159" g_stop="92231" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="390" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92232" i_stop="92541" i_length="310">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="92542" g_stop="92630" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="479" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="92631" i_stop="92722" i_length="92">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.623" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92723" g_stop="92828" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="585" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="92829" i_stop="93558" i_length="730">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="93559" g_stop="93771" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="798" r_length="213" r_score="0.991"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="93772" i_stop="94590" i_length="819">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="94591" g_stop="94649" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="799" r_stop="857" r_length="59" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="+" ref_id="SGN-E698487" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>857</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698487" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91108" e_stop="91162"/>
          <exon e_start="91596" e_stop="91717"/>
          <exon e_start="91935" e_stop="92074"/>
          <exon e_start="92159" e_stop="92231"/>
          <exon e_start="92542" e_stop="92630"/>
          <exon e_start="92723" e_stop="92828"/>
          <exon e_start="93559" e_stop="93771"/>
          <exon e_start="94591" e_stop="94649"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGCTCGTGAAGTAGAAGGAATTAGCCAGGTCGTGGCCCTTGACAATGACAAAGGTAATTCTATCTCAGTTTAGGGGGTGCTGCATAAAATGTCTAGCTGTTACGACACTAACCTTCACTGCCAACCATGGTAAAAGAAAATGAAATGCATCTCTCTGGTCAAGAGATCACTGAGCAGTCACAAAAGTAAGAATGTCTGATGGAATGGATTTGAAACATCTAATCTAAGAGTGTGTTTTATATAAATCATTCAGGTACTGGCTTTAATGTTTAGGTATTAAAACTGTAAATTAATGCGAGGATAGAAGTGAATTCCTTATTGTCGTGATAAATATGAGAAAAACGGTGGCATAATTCAGAGAATTTTATATAAGCTTTAACCAAAAAATTTACTTGTCTTGTTTCAAAATATCTATATAATAACGTGATACAGATATTACTTCTAATGTCCAATCCAGTATTTGAGTAGGTATTCCTTATGTTGCAGCCTCTGTGGAAGCTTGCAGGAGAAACATTAAGTTTAATGGTTCAGTGGCATGCTCTAAGGTGGAATCTCACCTTGCTGATGCAAGGGTTTATATGCTTACCCACCCAAACGAATTTGATGTGGTATGAATATACAATAAATTATCATATTTATATTCTTCTGAACTTTTAATGAATGAAAGTTGTTCTTTGGTGCTGGTTTAGTAAGTCAACCATGTTCAGGATATTTAGTTTGCACATTAAATTTCTTATCCTGGGTTACTTGCGTGTAAAATAATTTTTTGAATATCTATTTCAAGCTGAGCTTTTATTCATACATTTTGGGTTAGTGTTGTTTCAGGTTGATCTCGATCCTTATGGAGCACCTTCTGTGTTCTTAGACTCAGCAGTCCAATCTGTTGCTGATGGAGGAATGTTGATGTGTACTGCAACTGATATGGCAGTCTTATGTGCAGCAAATGGAGAAGTTTGCTATTCCAAGTAACCAAATAATCCCTTCGCTTATGGCGTTAAATAACTTTATTAGTCATTATATCCTGCTTACGTGATCTCATCTGCTACTAGATATGGCTCCTATCCTTTGAGAGGAAAATATTGTCATGAAATGGCTTTGCGGATCCTTCTTGCATCTATTGAGGTACTTCATTTGTGAACTTTTTGTCTATAGTTATTTTAAGCAGCGATTAATGATTTATGGGCTTCTGGCTACATTCATGCAATTTCTTTCTTTACATACTTTTTTGCATTATCCTAAAATTAGCAGCTGCCGTTAGCATTTTGAAGTTTTATCAACAAACTAGAAAAAATCCGTCACTTGTAATTTTAATATAGAAATTAGAAGTTCGTTAACTTCGTTTTGTTGATCGGTTGGTCCCATATCCTAAATAATGGGCGCTTCTTTAATTTTTCTTAGTTCTTAATTTTTTTATTTTATTATTTTATTTCAGAGCCATGCAAATCGATATAAGAGATATATAGTTCCAGTATTATCTGTTCAGATGGATTTCTATGTTCGCGTTTTTGTTCGTATATACACGTAAGTGTTCATCTTTTCTACAATTTAGTCAATTTTTCATAGGTTATCAACTTCCTCTCTATAGATGCGAGTTTTCTGATAATTGCTTGCAGTTCTGCAAGTGATGTGAAAAATACTCCTTTGAAGCTCTCATATGTCTATCAATGCATTGGCTGCGACTCATTTCATCTTCAGACAGTTGGGAGGACAGTCTCAAAGGTATTTCTACATTCACAATCTTTGAATGTCTTGCTCATACAAACTTCTTGTGCTGGATTGACCAGCTTATACTCTAATCTGGAAATCTTGGTAGATGAAAAAATCAGTGCCTAAAGATGCAGATTCATGGTACCTACTAATGTTCTTTATCAGCCCATAGTCTCACAAGTTTTATAATCCAGCACTTATTGTGTGGAAATTCTTCCTTCAACTCTTGTCATATCCTGCCAAAGAAATGCTTGGACCTCAGGTGGACTGTTGGTTCTAATGATATCTGCTCTGGAGGATGGAGTGCCCCTTGTTTAAGATAAAGCTTAGATGCTGCATTTTGTTATCTGAATTCACAGAATTTATTTTGTTATCTCGCTTATTGAAGATCATAACATCAATTTTCCTTGCTTAAAGAAGAAGATAACATCAAGAAAATAGAACATTTAATCAACTTTAGAAGTCTCCCAGTGTTCTGTTACTGCAAGTGTAACACGATCTAAATCCTATTAGCAAGCTTGTTTCTTCAATTGTTCTTTCTTTCATGCTGTTACCAGAATGATGACCTGCTAGGAATTTGGAGGAATCCCTTTTGGATTCTTTTATGTTCAATGGGGAAGTCCCTCCTCTTTGCCTTAGATCATGAGTTAGTTAGTTGTACCTTTTAATCCTTGGTAGAGACTGTTTTAATACATATTTTCAAATATGGCCAGTTATATGTTTTATTTTTCTGCTTATCTAGGATAAGAGTGTCCGATGCCTCCCTGGATTTGGCCCTGCAGTTCCTCAAGAGTGTAGTGATTGTGGTAAGAAATTCAACATGGGTGGACCCATATGGTCTGCCCCCATTCATGATCAAGAATGGGTAGCTGCCATGCTTGCAAATGTGAAATCAATGAAGGAACGCTATCCTGCTTATGAGCGGATCTCTGCTGTATTGACAACTATATCAGAGGTGTGGTTTGTCTTAATATTTATAGTATGCCTCTGTCCATAAGGCTGTTTCGTTCTTTATTCCTTTTAAATATATCCAGAATATGTTACATACTTTAAAGAAATGAAAACTACTTGAAATCATTAAAGTAACAATTACATCCTTTTTCACTTGTTGCTGATTTAGTACTAAACTCTTTTCCTATGAGAGGCACATAAACCTTTTCTTGATGTTCTTTCGGGGATAAGGAGCAAACAATCTTCTGATCACATGTTATTCAATTGTCCTTTCCTGTTGAATGTAATTCTGCACAGAATCAGGAGATTGAGTTGGCGTTCAAATCCCTAGTATTGTAACGTCTTTTCTTTTCGTTTTGGTATGACAGTTGTGTTCCAATTGTTGAAGAAATATTGCATAATAGTGAAGAAGGTATTTAACGCAATTAGACATCGTAAATTTGTCAATAGGACTTAACCTGCTCTAATGACCACAAATGTGAAGGTTGATCTTGTAATGGGGCTTCGAATTTGTTGAAGGAAAATATAAATTCAGTTAGGAATGCCAGTCCTTCAATCCACTCACAGTTCTACATTGATGAATTTGACAAGTAATGGCATGACTTTTACTGCTGGCACAGCAGCGCAATTTTTTTGGGGGGCAAAGAAACTTTTGTCCTTCACTCGTTATTTGGAGACATTTGTTATTCACTGCAGATCCTATTGATGAGAAATAGTTCAATCAGTTATTTATTCAGTGCAGATCATATTGACGAGGAACAGTTTTATCGGTTATTTTTGGTGGATGTTTTCTAAATTCTGATCCAAGAGTGTGCTTTTGCAGGAACTACCTGATATTCCTCTGTTTCTGAGTTTGCACAATCTCTGTGCAACACTAAAATG</genome_strand>
        <mrna_strand>CACGTTCGTGAAGTAGAAGGAATTAGCCAGGTCGTGGCCCTTGACAATGACAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCTGTGGAAGCTTGCAGGAGAAACATTAAGTTTAATGGTTCAGTGGCATGCTCTAAGGTGGAATCTCACCTTGCTGATGCAAGGGTTTATATGCTTACCCACCCAAACGAATTTGATGTG.........................................................................................................................................................................................................................GTTGATCTCGATCCTTATGGAGCACCTTCTGTGTTCTTAGACTCAGCAGTCCAATCTGTTGCTGATGGAGGAATGTTGATGTGTACTGCAACTGATATGGCAGTCTTATGTGCAGCAAATGGAGAAGTTTGCTATTCCAA....................................................................................ATATGGCTCCTATCCTTTGAGAGGAAAATATTGTCATGAAATGGCTTTGCGGATCCTTCTTGCATCTATTGAG......................................................................................................................................................................................................................................................................................................................AGCCATGCAAATCGATATAAGAGATATATAGTTCCAGTATTATCTGTTCAGATGGATTTCTATGTTCGCGTTTTTGTTCGTATATACAC............................................................................................TTCTGCAAGTGATGTGAAAAATACTCCTTTGAAGCTCTCATATGTCTATCAATGCATTGGCTGCGACTCATTTCATCTTCAGACAGTTGGGAGGACAGTCTCAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAGAGTGTCCGATGCCTCCCTGGATTTGGCCCTGCAGTTCCTCAAGAGTGTAGTGATTGTGGTAAGAAATTCAACATGGGTGGACCCATATGGTCTGCCCCCATTCATGATCAAGAATGGGTAGCTGCCATGCTTGCAAATGTGAAATCAATGAAAGAACGCTATCCTGCTTATGAGCGGATCTCTGCTGTATTGACAACTATATCAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTACCTGATATTCCTCTGTTTCTGAGTTTGCACAATCTCTGTGCAACACTAAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E438816" ref_strand="+" ref_description="SGN-E438816 [cSTA-9-D16]">
      <seq>gatggaggaatattgatgtgtaccgcaactgatatggcagtgttatgtgcagcaaatggagaagtttgctattccaaatatggctcctatcctttgagaggaaaatattgccatgaaatggctttgcggatccttcttgcgtctattgagagccatgcaaatcgatataagagatatatagttccagtattatctgttcagatggatttctatgttcgcgtttttgttcgtatatacacttctgcaagtgatgtgaaaaatactcctttgaagctctcatatgtctatcaatgcattggctgtgactcatttcatcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="+" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="91698" stop="93102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91998" g_stop="92074" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92075" i_stop="92158" i_length="84">
            <donor d_prob="0.948" d_score="0.98"/>
            <acceptor a_prob="0.111" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92159" g_stop="92231" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="150" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92232" i_stop="92541" i_length="310">
            <donor d_prob="0.981" d_score="0.96"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92542" g_stop="92630" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="239" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92631" i_stop="92722" i_length="92">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.623" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92723" g_stop="92802" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="319" r_length="80" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="+" ref_id="SGN-E438816" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>319</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E438816" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91998" e_stop="92074"/>
          <exon e_start="92159" e_stop="92231"/>
          <exon e_start="92542" e_stop="92630"/>
          <exon e_start="92723" e_stop="92802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGGAGGAATGTTGATGTGTACTGCAACTGATATGGCAGTCTTATGTGCAGCAAATGGAGAAGTTTGCTATTCCAAGTAACCAAATAATCCCTTCGCTTATGGCGTTAAATAACTTTATTAGTCATTATATCCTGCTTACGTGATCTCATCTGCTACTAGATATGGCTCCTATCCTTTGAGAGGAAAATATTGTCATGAAATGGCTTTGCGGATCCTTCTTGCATCTATTGAGGTACTTCATTTGTGAACTTTTTGTCTATAGTTATTTTAAGCAGCGATTAATGATTTATGGGCTTCTGGCTACATTCATGCAATTTCTTTCTTTACATACTTTTTTGCATTATCCTAAAATTAGCAGCTGCCGTTAGCATTTTGAAGTTTTATCAACAAACTAGAAAAAATCCGTCACTTGTAATTTTAATATAGAAATTAGAAGTTCGTTAACTTCGTTTTGTTGATCGGTTGGTCCCATATCCTAAATAATGGGCGCTTCTTTAATTTTTCTTAGTTCTTAATTTTTTTATTTTATTATTTTATTTCAGAGCCATGCAAATCGATATAAGAGATATATAGTTCCAGTATTATCTGTTCAGATGGATTTCTATGTTCGCGTTTTTGTTCGTATATACACGTAAGTGTTCATCTTTTCTACAATTTAGTCAATTTTTCATAGGTTATCAACTTCCTCTCTATAGATGCGAGTTTTCTGATAATTGCTTGCAGTTCTGCAAGTGATGTGAAAAATACTCCTTTGAAGCTCTCATATGTCTATCAATGCATTGGCTGCGACTCATTTCATCTTC</genome_strand>
        <mrna_strand>GATGGAGGAATATTGATGTGTACCGCAACTGATATGGCAGTGTTATGTGCAGCAAATGGAGAAGTTTGCTATTCCAA....................................................................................ATATGGCTCCTATCCTTTGAGAGGAAAATATTGCCATGAAATGGCTTTGCGGATCCTTCTTGCGTCTATTGAG......................................................................................................................................................................................................................................................................................................................AGCCATGCAAATCGATATAAGAGATATATAGTTCCAGTATTATCTGTTCAGATGGATTTCTATGTTCGCGTTTTTGTTCGTATATACAC............................................................................................TTCTGCAAGTGATGTGAAAAATACTCCTTTGAAGCTCTCATATGTCTATCAATGCATTGGCTGTGACTCATTTCATCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E472654" ref_strand="+" ref_description="SGN-E472654 [cSTB-29-B5]">
      <seq>tattgatgtgtaccgcaactgatatggcagtgttatgtgcagcaaatggagaagtttgctattccaaatatggctcctatcctttgagaggaaaatattgccatgaaatggctttgcggatccttcttgcgtctattgagagccatgcaaatcgatataagagatatatagttccagtattatctgttcagatggacttctatgttcgcgtttttgttcgtatatacacttctgcaagtgatgtgaaaaatactcctttgaagctctcatacgtctatcaatgcattggctgtgactcatttcatcttcagacagttgggaggaccgtctcaaaggataagagtgtccgatgcctccctggatttggccctgcagttcctcaagagtgtagtgattgtggtaagaaattcaacatgggtggacccatatggtctgcccccattcatgatcaagaatgggtagctgccatgcttgcaaatgtgaaatcaatgaaggaacgctatcccgcttatgagcggatctctgctgtattgacaactgtatcagaggaactacctgatattcctctgtttctgagtttgcacaatctctgtgcaacactgaaatgcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="+" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="91708" stop="94953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92008" g_stop="92074" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92075" i_stop="92158" i_length="84">
            <donor d_prob="0.948" d_score="0.98"/>
            <acceptor a_prob="0.111" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92159" g_stop="92231" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="140" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92232" i_stop="92541" i_length="310">
            <donor d_prob="0.981" d_score="0.96"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92542" g_stop="92630" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="229" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92631" i_stop="92722" i_length="92">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.623" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92723" g_stop="92828" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="335" r_length="106" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92829" i_stop="93558" i_length="730">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93559" g_stop="93771" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="548" r_length="213" r_score="0.991"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="93772" i_stop="94590" i_length="819">
            <donor d_prob="0.976" d_score="0.96"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="94591" g_stop="94653" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="611" r_length="63" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="+" ref_id="SGN-E472654" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E472654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92008" e_stop="92074"/>
          <exon e_start="92159" e_stop="92231"/>
          <exon e_start="92542" e_stop="92630"/>
          <exon e_start="92723" e_stop="92828"/>
          <exon e_start="93559" e_stop="93771"/>
          <exon e_start="94591" e_stop="94653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTGATGTGTACTGCAACTGATATGGCAGTCTTATGTGCAGCAAATGGAGAAGTTTGCTATTCCAAGTAACCAAATAATCCCTTCGCTTATGGCGTTAAATAACTTTATTAGTCATTATATCCTGCTTACGTGATCTCATCTGCTACTAGATATGGCTCCTATCCTTTGAGAGGAAAATATTGTCATGAAATGGCTTTGCGGATCCTTCTTGCATCTATTGAGGTACTTCATTTGTGAACTTTTTGTCTATAGTTATTTTAAGCAGCGATTAATGATTTATGGGCTTCTGGCTACATTCATGCAATTTCTTTCTTTACATACTTTTTTGCATTATCCTAAAATTAGCAGCTGCCGTTAGCATTTTGAAGTTTTATCAACAAACTAGAAAAAATCCGTCACTTGTAATTTTAATATAGAAATTAGAAGTTCGTTAACTTCGTTTTGTTGATCGGTTGGTCCCATATCCTAAATAATGGGCGCTTCTTTAATTTTTCTTAGTTCTTAATTTTTTTATTTTATTATTTTATTTCAGAGCCATGCAAATCGATATAAGAGATATATAGTTCCAGTATTATCTGTTCAGATGGATTTCTATGTTCGCGTTTTTGTTCGTATATACACGTAAGTGTTCATCTTTTCTACAATTTAGTCAATTTTTCATAGGTTATCAACTTCCTCTCTATAGATGCGAGTTTTCTGATAATTGCTTGCAGTTCTGCAAGTGATGTGAAAAATACTCCTTTGAAGCTCTCATATGTCTATCAATGCATTGGCTGCGACTCATTTCATCTTCAGACAGTTGGGAGGACAGTCTCAAAGGTATTTCTACATTCACAATCTTTGAATGTCTTGCTCATACAAACTTCTTGTGCTGGATTGACCAGCTTATACTCTAATCTGGAAATCTTGGTAGATGAAAAAATCAGTGCCTAAAGATGCAGATTCATGGTACCTACTAATGTTCTTTATCAGCCCATAGTCTCACAAGTTTTATAATCCAGCACTTATTGTGTGGAAATTCTTCCTTCAACTCTTGTCATATCCTGCCAAAGAAATGCTTGGACCTCAGGTGGACTGTTGGTTCTAATGATATCTGCTCTGGAGGATGGAGTGCCCCTTGTTTAAGATAAAGCTTAGATGCTGCATTTTGTTATCTGAATTCACAGAATTTATTTTGTTATCTCGCTTATTGAAGATCATAACATCAATTTTCCTTGCTTAAAGAAGAAGATAACATCAAGAAAATAGAACATTTAATCAACTTTAGAAGTCTCCCAGTGTTCTGTTACTGCAAGTGTAACACGATCTAAATCCTATTAGCAAGCTTGTTTCTTCAATTGTTCTTTCTTTCATGCTGTTACCAGAATGATGACCTGCTAGGAATTTGGAGGAATCCCTTTTGGATTCTTTTATGTTCAATGGGGAAGTCCCTCCTCTTTGCCTTAGATCATGAGTTAGTTAGTTGTACCTTTTAATCCTTGGTAGAGACTGTTTTAATACATATTTTCAAATATGGCCAGTTATATGTTTTATTTTTCTGCTTATCTAGGATAAGAGTGTCCGATGCCTCCCTGGATTTGGCCCTGCAGTTCCTCAAGAGTGTAGTGATTGTGGTAAGAAATTCAACATGGGTGGACCCATATGGTCTGCCCCCATTCATGATCAAGAATGGGTAGCTGCCATGCTTGCAAATGTGAAATCAATGAAGGAACGCTATCCTGCTTATGAGCGGATCTCTGCTGTATTGACAACTATATCAGAGGTGTGGTTTGTCTTAATATTTATAGTATGCCTCTGTCCATAAGGCTGTTTCGTTCTTTATTCCTTTTAAATATATCCAGAATATGTTACATACTTTAAAGAAATGAAAACTACTTGAAATCATTAAAGTAACAATTACATCCTTTTTCACTTGTTGCTGATTTAGTACTAAACTCTTTTCCTATGAGAGGCACATAAACCTTTTCTTGATGTTCTTTCGGGGATAAGGAGCAAACAATCTTCTGATCACATGTTATTCAATTGTCCTTTCCTGTTGAATGTAATTCTGCACAGAATCAGGAGATTGAGTTGGCGTTCAAATCCCTAGTATTGTAACGTCTTTTCTTTTCGTTTTGGTATGACAGTTGTGTTCCAATTGTTGAAGAAATATTGCATAATAGTGAAGAAGGTATTTAACGCAATTAGACATCGTAAATTTGTCAATAGGACTTAACCTGCTCTAATGACCACAAATGTGAAGGTTGATCTTGTAATGGGGCTTCGAATTTGTTGAAGGAAAATATAAATTCAGTTAGGAATGCCAGTCCTTCAATCCACTCACAGTTCTACATTGATGAATTTGACAAGTAATGGCATGACTTTTACTGCTGGCACAGCAGCGCAATTTTTTTGGGGGGCAAAGAAACTTTTGTCCTTCACTCGTTATTTGGAGACATTTGTTATTCACTGCAGATCCTATTGATGAGAAATAGTTCAATCAGTTATTTATTCAGTGCAGATCATATTGACGAGGAACAGTTTTATCGGTTATTTTTGGTGGATGTTTTCTAAATTCTGATCCAAGAGTGTGCTTTTGCAGGAACTACCTGATATTCCTCTGTTTCTGAGTTTGCACAATCTCTGTGCAACACTAAAATGCACT</genome_strand>
        <mrna_strand>TATTGATGTGTACCGCAACTGATATGGCAGTGTTATGTGCAGCAAATGGAGAAGTTTGCTATTCCAA....................................................................................ATATGGCTCCTATCCTTTGAGAGGAAAATATTGCCATGAAATGGCTTTGCGGATCCTTCTTGCGTCTATTGAG......................................................................................................................................................................................................................................................................................................................AGCCATGCAAATCGATATAAGAGATATATAGTTCCAGTATTATCTGTTCAGATGGACTTCTATGTTCGCGTTTTTGTTCGTATATACAC............................................................................................TTCTGCAAGTGATGTGAAAAATACTCCTTTGAAGCTCTCATACGTCTATCAATGCATTGGCTGTGACTCATTTCATCTTCAGACAGTTGGGAGGACCGTCTCAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAGAGTGTCCGATGCCTCCCTGGATTTGGCCCTGCAGTTCCTCAAGAGTGTAGTGATTGTGGTAAGAAATTCAACATGGGTGGACCCATATGGTCTGCCCCCATTCATGATCAAGAATGGGTAGCTGCCATGCTTGCAAATGTGAAATCAATGAAGGAACGCTATCCCGCTTATGAGCGGATCTCTGCTGTATTGACAACTGTATCAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTACCTGATATTCCTCTGTTTCTGAGTTTGCACAATCTCTGTGCAACACTGAAATGCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E347954" ref_strand="+" ref_description="SGN-E347954 [cTOF-31-N3]">
      <seq>gaaaatattgtcatgaaatggctttgcggatccttcttgcatctattgagagccatgcaaatcgatataagagatatatagttccagtattatctgttcagatggatttctatgttcgcgtttttgttcgtatatacacttctgcaagtgatgtgaaaaatactcctttgaagctctcatatgtctatcaatgcattggctgcgactcatttcatcttcagacagttgggaggacagtctcaaaggataagagtgtccgatgcctccctggatttggccctgcagttcctcaagagtgtagtgattgtggtaagaaattcaacatgggtggacccatatggtctgcccccattcatgatcaagaatgggtagctgccatgcttgcaaatgtgaaatcaatgaaggaacgctatcctgcttatgagcggatctctgctgtattgacaactatatcagaggaactacctgatattcctctgtttctgagtttgcacaatctctgtgcaacactaaaatgcacttctccctcggcagtaatatttcgctctgctgtgatcaacgcaggatatcgcatatcagggactcatgtgaatcctttggggttgaaaacagatgctcctatgaatgtcatttgggatatcatgcgttgctgggtcagaaatcatcctgtgaaagcacaaccatctgaccagtctggaagtgtgattcttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="+" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="91882" stop="96621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92182" g_stop="92231" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92232" i_stop="92541" i_length="310">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92542" g_stop="92630" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="139" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92631" i_stop="92722" i_length="92">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.623" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92723" g_stop="92828" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="245" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92829" i_stop="93558" i_length="730">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93559" g_stop="93771" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="458" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93772" i_stop="94590" i_length="819">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94591" g_stop="94696" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="564" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="94697" i_stop="96034" i_length="1338">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96035" g_stop="96123" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="653" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="96124" i_stop="96261" i_length="138">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96262" g_stop="96321" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="713" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="+" ref_id="SGN-E347954" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347954" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92182" e_stop="92231"/>
          <exon e_start="92542" e_stop="92630"/>
          <exon e_start="92723" e_stop="92828"/>
          <exon e_start="93559" e_stop="93771"/>
          <exon e_start="94591" e_stop="94696"/>
          <exon e_start="96035" e_stop="96123"/>
          <exon e_start="96262" e_stop="96321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATATTGTCATGAAATGGCTTTGCGGATCCTTCTTGCATCTATTGAGGTACTTCATTTGTGAACTTTTTGTCTATAGTTATTTTAAGCAGCGATTAATGATTTATGGGCTTCTGGCTACATTCATGCAATTTCTTTCTTTACATACTTTTTTGCATTATCCTAAAATTAGCAGCTGCCGTTAGCATTTTGAAGTTTTATCAACAAACTAGAAAAAATCCGTCACTTGTAATTTTAATATAGAAATTAGAAGTTCGTTAACTTCGTTTTGTTGATCGGTTGGTCCCATATCCTAAATAATGGGCGCTTCTTTAATTTTTCTTAGTTCTTAATTTTTTTATTTTATTATTTTATTTCAGAGCCATGCAAATCGATATAAGAGATATATAGTTCCAGTATTATCTGTTCAGATGGATTTCTATGTTCGCGTTTTTGTTCGTATATACACGTAAGTGTTCATCTTTTCTACAATTTAGTCAATTTTTCATAGGTTATCAACTTCCTCTCTATAGATGCGAGTTTTCTGATAATTGCTTGCAGTTCTGCAAGTGATGTGAAAAATACTCCTTTGAAGCTCTCATATGTCTATCAATGCATTGGCTGCGACTCATTTCATCTTCAGACAGTTGGGAGGACAGTCTCAAAGGTATTTCTACATTCACAATCTTTGAATGTCTTGCTCATACAAACTTCTTGTGCTGGATTGACCAGCTTATACTCTAATCTGGAAATCTTGGTAGATGAAAAAATCAGTGCCTAAAGATGCAGATTCATGGTACCTACTAATGTTCTTTATCAGCCCATAGTCTCACAAGTTTTATAATCCAGCACTTATTGTGTGGAAATTCTTCCTTCAACTCTTGTCATATCCTGCCAAAGAAATGCTTGGACCTCAGGTGGACTGTTGGTTCTAATGATATCTGCTCTGGAGGATGGAGTGCCCCTTGTTTAAGATAAAGCTTAGATGCTGCATTTTGTTATCTGAATTCACAGAATTTATTTTGTTATCTCGCTTATTGAAGATCATAACATCAATTTTCCTTGCTTAAAGAAGAAGATAACATCAAGAAAATAGAACATTTAATCAACTTTAGAAGTCTCCCAGTGTTCTGTTACTGCAAGTGTAACACGATCTAAATCCTATTAGCAAGCTTGTTTCTTCAATTGTTCTTTCTTTCATGCTGTTACCAGAATGATGACCTGCTAGGAATTTGGAGGAATCCCTTTTGGATTCTTTTATGTTCAATGGGGAAGTCCCTCCTCTTTGCCTTAGATCATGAGTTAGTTAGTTGTACCTTTTAATCCTTGGTAGAGACTGTTTTAATACATATTTTCAAATATGGCCAGTTATATGTTTTATTTTTCTGCTTATCTAGGATAAGAGTGTCCGATGCCTCCCTGGATTTGGCCCTGCAGTTCCTCAAGAGTGTAGTGATTGTGGTAAGAAATTCAACATGGGTGGACCCATATGGTCTGCCCCCATTCATGATCAAGAATGGGTAGCTGCCATGCTTGCAAATGTGAAATCAATGAAGGAACGCTATCCTGCTTATGAGCGGATCTCTGCTGTATTGACAACTATATCAGAGGTGTGGTTTGTCTTAATATTTATAGTATGCCTCTGTCCATAAGGCTGTTTCGTTCTTTATTCCTTTTAAATATATCCAGAATATGTTACATACTTTAAAGAAATGAAAACTACTTGAAATCATTAAAGTAACAATTACATCCTTTTTCACTTGTTGCTGATTTAGTACTAAACTCTTTTCCTATGAGAGGCACATAAACCTTTTCTTGATGTTCTTTCGGGGATAAGGAGCAAACAATCTTCTGATCACATGTTATTCAATTGTCCTTTCCTGTTGAATGTAATTCTGCACAGAATCAGGAGATTGAGTTGGCGTTCAAATCCCTAGTATTGTAACGTCTTTTCTTTTCGTTTTGGTATGACAGTTGTGTTCCAATTGTTGAAGAAATATTGCATAATAGTGAAGAAGGTATTTAACGCAATTAGACATCGTAAATTTGTCAATAGGACTTAACCTGCTCTAATGACCACAAATGTGAAGGTTGATCTTGTAATGGGGCTTCGAATTTGTTGAAGGAAAATATAAATTCAGTTAGGAATGCCAGTCCTTCAATCCACTCACAGTTCTACATTGATGAATTTGACAAGTAATGGCATGACTTTTACTGCTGGCACAGCAGCGCAATTTTTTTGGGGGGCAAAGAAACTTTTGTCCTTCACTCGTTATTTGGAGACATTTGTTATTCACTGCAGATCCTATTGATGAGAAATAGTTCAATCAGTTATTTATTCAGTGCAGATCATATTGACGAGGAACAGTTTTATCGGTTATTTTTGGTGGATGTTTTCTAAATTCTGATCCAAGAGTGTGCTTTTGCAGGAACTACCTGATATTCCTCTGTTTCTGAGTTTGCACAATCTCTGTGCAACACTAAAATGCACTTCTCCCTCGGCAGTAATATTTCGCTCTGCTGTGATCAACGCAGGATACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGATGTGCGAACTCGATATTTTACACGACTCTCTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTAACGTTGGCTTGCCACGCATTACTTGACTGTAAAACTCTCACTCTTACCGAACTTGGCCGTAACCTGCCAACCAAAGCGAGAACAAAACATAACATCAAACGAATCGACCGATTGTTAGGTAATCGTCACCTCCACAAAGAGCGACTCGCTGTATACCGTTGGCATGCTAGCTTTATCTGTTCGGGCAATACGATGCCCATTGTACTTGTTGACTGGTCTGATATTCGTGAGCAAAAACGACTTATGGTATTGCGAGCTTCAGTCGCACTACACGGTCGTTCTGTTACTCTTTATGAGAAAGCGTTCCCGCTTTCAGAGCAATGTTCAAAGAAAGCTCATGACCAATTTCTAGCCGACCTTGCGAGCATTCTACCGAGTAACACCACACCGCTCATTGTCAGTGATGCTGGCTTTAAAGTGCCATGGTATAAATCCGTTGAGAAGCTGGGTTGGTACTGGTTAAGTCGAGTAAGAGGAAAAGTACAATATGCAGACCTAGGAGCGGAAAACTGGAAACCTATCAGCAACTTACATGATATGTCATCTAGTCACTCAAAGACTTTAGGCTATAAGAGGCTGACTAAAAGCAATCCAATCTCATGCCAAATTCTATTGTATAAATCTCGCTCTAAAGGCCGAAAAAATCAGCGCTCGACACGGACTCATTGTCACCACCCGTCACCTAAAATCTACTCAGCGTCGGCAAAGGAGCCATGGGTTCTAGCAACTAACTTACCTGTTGAAATTCGAACACCCAAACAACTTGTTAATATCTATTCGAAGCGAATGCAGATTGAAGAAACCTTCCGAGACTTGAAAAGTCCTGCCTACGGACTAGGCCTACGCCATAGCCGAACGAGCAGCTCAGAGCGTTTTGATATCATGCTGCTAATCGCCCTGATGCTTCAACTAACATGTTGGCTTGCGGGCGTTCATGCTCAGAAACAAGGTTGGGACAAGCACTTCCAGGCTAACACAGTCAGAAATCGAAACGTACTCTCAACAGTTCGCTTAGGCATGGAAGTTTTGCGGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGCGCAGGATATCGCATATCAGGGACTCATGTGAATCCTTTGGGGTTGAAAACAGATGCTCCTATGAATGTCATTTGGGATATCATGCGTTGCTGGGTAAGTTTTAATCATTTGCTTGTTTTTGGCAGTTCTTGCTTGATATTCTTTGTATTAGCTTACGCCTTTGCTTGTTTCATATTTTGAAAATAAGACATCCTTCTTCTACCATCTGAGCTGATAATGTTCTATTTGCAGGTCAGAAATCATCCTGTGAAAGCACAACCATCTGACCAGTCTGGAAGTGTGATTCTTGCT</genome_strand>
        <mrna_strand>GAAAATATTGTCATGAAATGGCTTTGCGGATCCTTCTTGCATCTATTGAG......................................................................................................................................................................................................................................................................................................................AGCCATGCAAATCGATATAAGAGATATATAGTTCCAGTATTATCTGTTCAGATGGATTTCTATGTTCGCGTTTTTGTTCGTATATACAC............................................................................................TTCTGCAAGTGATGTGAAAAATACTCCTTTGAAGCTCTCATATGTCTATCAATGCATTGGCTGCGACTCATTTCATCTTCAGACAGTTGGGAGGACAGTCTCAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAGAGTGTCCGATGCCTCCCTGGATTTGGCCCTGCAGTTCCTCAAGAGTGTAGTGATTGTGGTAAGAAATTCAACATGGGTGGACCCATATGGTCTGCCCCCATTCATGATCAAGAATGGGTAGCTGCCATGCTTGCAAATGTGAAATCAATGAAGGAACGCTATCCTGCTTATGAGCGGATCTCTGCTGTATTGACAACTATATCAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTACCTGATATTCCTCTGTTTCTGAGTTTGCACAATCTCTGTGCAACACTAAAATGCACTTCTCCCTCGGCAGTAATATTTCGCTCTGCTGTGATCAACGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATCGCATATCAGGGACTCATGTGAATCCTTTGGGGTTGAAAACAGATGCTCCTATGAATGTCATTTGGGATATCATGCGTTGCTGG..........................................................................................................................................GTCAGAAATCATCCTGTGAAAGCACAACCATCTGACCAGTCTGGAAGTGTGATTCTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E453619" ref_strand="+" ref_description="SGN-E453619 [cSTS-20-J1]">
      <seq>cgtctattgagagccatgcaaatcgatataagagatatatagttccagtattatctgttcagatggacttctatgttcgcgtttttgttcgtatatacacttctgcaagtgatgtgaaaaatactcctttgaagctctcatacgtctatcaatgcattggctgtgactcatttcatcttcagacagttgggaggaccgtctcaaaggataagagtgtccgatgcctccctggatttggccctgcagttcctcaagagtgtagtgattgtggtaagaaattcaacatgggtggacccatatggtctgcccccattcatgatcaagaatgggtagctgccatgcttgcaaatgtgaaatcaatgaaggaacgctatcccgcttatgagcggatctctgctgtattgacaactgtatcagaggaactacctgatattcctctgtttctgagtttgcacaatctctgtgcaacactgaaatgcacttctccctcagcagtaatatttcgctctgctgtgataaacgcaggatatcgcatatcagggactcatgtgaatcctttggggttgaaaacagatgctcctatgaatgtcatttgggatatcatgcgttgctgggtcagaaatcatcctgtgaaagctcaaccatctgaccagtctggaagtgtgatccttgctaaggagcctgttctgcaggctaattttgctcgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="+" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="92232" stop="97134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92542" g_stop="92630" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="100" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92631" i_stop="92722" i_length="92">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.623" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92723" g_stop="92828" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="206" r_length="106" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92829" i_stop="93558" i_length="730">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93559" g_stop="93771" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="419" r_length="213" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93772" i_stop="94590" i_length="819">
            <donor d_prob="0.976" d_score="0.96"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94591" g_stop="94696" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="525" r_length="106" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94697" i_stop="96034" i_length="1338">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96035" g_stop="96123" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="614" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="96124" i_stop="96261" i_length="138">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96262" g_stop="96339" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="692" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="96340" i_stop="96817" i_length="478">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96818" g_stop="96834" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="693" r_stop="709" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="+" ref_id="SGN-E453619" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E453619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92542" e_stop="92630"/>
          <exon e_start="92723" e_stop="92828"/>
          <exon e_start="93559" e_stop="93771"/>
          <exon e_start="94591" e_stop="94696"/>
          <exon e_start="96035" e_stop="96123"/>
          <exon e_start="96262" e_stop="96339"/>
          <exon e_start="96818" e_stop="96834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCATGCAAATCGATATAAGAGATATATAGTTCCAGTATTATCTGTTCAGATGGATTTCTATGTTCGCGTTTTTGTTCGTATATACACGTAAGTGTTCATCTTTTCTACAATTTAGTCAATTTTTCATAGGTTATCAACTTCCTCTCTATAGATGCGAGTTTTCTGATAATTGCTTGCAGTTCTGCAAGTGATGTGAAAAATACTCCTTTGAAGCTCTCATATGTCTATCAATGCATTGGCTGCGACTCATTTCATCTTCAGACAGTTGGGAGGACAGTCTCAAAGGTATTTCTACATTCACAATCTTTGAATGTCTTGCTCATACAAACTTCTTGTGCTGGATTGACCAGCTTATACTCTAATCTGGAAATCTTGGTAGATGAAAAAATCAGTGCCTAAAGATGCAGATTCATGGTACCTACTAATGTTCTTTATCAGCCCATAGTCTCACAAGTTTTATAATCCAGCACTTATTGTGTGGAAATTCTTCCTTCAACTCTTGTCATATCCTGCCAAAGAAATGCTTGGACCTCAGGTGGACTGTTGGTTCTAATGATATCTGCTCTGGAGGATGGAGTGCCCCTTGTTTAAGATAAAGCTTAGATGCTGCATTTTGTTATCTGAATTCACAGAATTTATTTTGTTATCTCGCTTATTGAAGATCATAACATCAATTTTCCTTGCTTAAAGAAGAAGATAACATCAAGAAAATAGAACATTTAATCAACTTTAGAAGTCTCCCAGTGTTCTGTTACTGCAAGTGTAACACGATCTAAATCCTATTAGCAAGCTTGTTTCTTCAATTGTTCTTTCTTTCATGCTGTTACCAGAATGATGACCTGCTAGGAATTTGGAGGAATCCCTTTTGGATTCTTTTATGTTCAATGGGGAAGTCCCTCCTCTTTGCCTTAGATCATGAGTTAGTTAGTTGTACCTTTTAATCCTTGGTAGAGACTGTTTTAATACATATTTTCAAATATGGCCAGTTATATGTTTTATTTTTCTGCTTATCTAGGATAAGAGTGTCCGATGCCTCCCTGGATTTGGCCCTGCAGTTCCTCAAGAGTGTAGTGATTGTGGTAAGAAATTCAACATGGGTGGACCCATATGGTCTGCCCCCATTCATGATCAAGAATGGGTAGCTGCCATGCTTGCAAATGTGAAATCAATGAAGGAACGCTATCCTGCTTATGAGCGGATCTCTGCTGTATTGACAACTATATCAGAGGTGTGGTTTGTCTTAATATTTATAGTATGCCTCTGTCCATAAGGCTGTTTCGTTCTTTATTCCTTTTAAATATATCCAGAATATGTTACATACTTTAAAGAAATGAAAACTACTTGAAATCATTAAAGTAACAATTACATCCTTTTTCACTTGTTGCTGATTTAGTACTAAACTCTTTTCCTATGAGAGGCACATAAACCTTTTCTTGATGTTCTTTCGGGGATAAGGAGCAAACAATCTTCTGATCACATGTTATTCAATTGTCCTTTCCTGTTGAATGTAATTCTGCACAGAATCAGGAGATTGAGTTGGCGTTCAAATCCCTAGTATTGTAACGTCTTTTCTTTTCGTTTTGGTATGACAGTTGTGTTCCAATTGTTGAAGAAATATTGCATAATAGTGAAGAAGGTATTTAACGCAATTAGACATCGTAAATTTGTCAATAGGACTTAACCTGCTCTAATGACCACAAATGTGAAGGTTGATCTTGTAATGGGGCTTCGAATTTGTTGAAGGAAAATATAAATTCAGTTAGGAATGCCAGTCCTTCAATCCACTCACAGTTCTACATTGATGAATTTGACAAGTAATGGCATGACTTTTACTGCTGGCACAGCAGCGCAATTTTTTTGGGGGGCAAAGAAACTTTTGTCCTTCACTCGTTATTTGGAGACATTTGTTATTCACTGCAGATCCTATTGATGAGAAATAGTTCAATCAGTTATTTATTCAGTGCAGATCATATTGACGAGGAACAGTTTTATCGGTTATTTTTGGTGGATGTTTTCTAAATTCTGATCCAAGAGTGTGCTTTTGCAGGAACTACCTGATATTCCTCTGTTTCTGAGTTTGCACAATCTCTGTGCAACACTAAAATGCACTTCTCCCTCGGCAGTAATATTTCGCTCTGCTGTGATCAACGCAGGATACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGATGTGCGAACTCGATATTTTACACGACTCTCTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTAACGTTGGCTTGCCACGCATTACTTGACTGTAAAACTCTCACTCTTACCGAACTTGGCCGTAACCTGCCAACCAAAGCGAGAACAAAACATAACATCAAACGAATCGACCGATTGTTAGGTAATCGTCACCTCCACAAAGAGCGACTCGCTGTATACCGTTGGCATGCTAGCTTTATCTGTTCGGGCAATACGATGCCCATTGTACTTGTTGACTGGTCTGATATTCGTGAGCAAAAACGACTTATGGTATTGCGAGCTTCAGTCGCACTACACGGTCGTTCTGTTACTCTTTATGAGAAAGCGTTCCCGCTTTCAGAGCAATGTTCAAAGAAAGCTCATGACCAATTTCTAGCCGACCTTGCGAGCATTCTACCGAGTAACACCACACCGCTCATTGTCAGTGATGCTGGCTTTAAAGTGCCATGGTATAAATCCGTTGAGAAGCTGGGTTGGTACTGGTTAAGTCGAGTAAGAGGAAAAGTACAATATGCAGACCTAGGAGCGGAAAACTGGAAACCTATCAGCAACTTACATGATATGTCATCTAGTCACTCAAAGACTTTAGGCTATAAGAGGCTGACTAAAAGCAATCCAATCTCATGCCAAATTCTATTGTATAAATCTCGCTCTAAAGGCCGAAAAAATCAGCGCTCGACACGGACTCATTGTCACCACCCGTCACCTAAAATCTACTCAGCGTCGGCAAAGGAGCCATGGGTTCTAGCAACTAACTTACCTGTTGAAATTCGAACACCCAAACAACTTGTTAATATCTATTCGAAGCGAATGCAGATTGAAGAAACCTTCCGAGACTTGAAAAGTCCTGCCTACGGACTAGGCCTACGCCATAGCCGAACGAGCAGCTCAGAGCGTTTTGATATCATGCTGCTAATCGCCCTGATGCTTCAACTAACATGTTGGCTTGCGGGCGTTCATGCTCAGAAACAAGGTTGGGACAAGCACTTCCAGGCTAACACAGTCAGAAATCGAAACGTACTCTCAACAGTTCGCTTAGGCATGGAAGTTTTGCGGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGCGCAGGATATCGCATATCAGGGACTCATGTGAATCCTTTGGGGTTGAAAACAGATGCTCCTATGAATGTCATTTGGGATATCATGCGTTGCTGGGTAAGTTTTAATCATTTGCTTGTTTTTGGCAGTTCTTGCTTGATATTCTTTGTATTAGCTTACGCCTTTGCTTGTTTCATATTTTGAAAATAAGACATCCTTCTTCTACCATCTGAGCTGATAATGTTCTATTTGCAGGTCAGAAATCATCCTGTGAAAGCACAACCATCTGACCAGTCTGGAAGTGTGATTCTTGCTAAGGAGCCTGTTCTGCAGGTGAACTTTAACCCTCTGGAAGTGATATTATTTTACCGCATCATTGTCATATGGCATAAAGGATACTTCTTGGTCCAAACTATATTGAATTTATACATATAAAGGTGTAAAAAAAAAGGACAATATTCCTTTTTTAATAAAGGACAAAATATGAATGTGAGATTCTGGTCCATGTTCTTAATAATTCATGCACCCGTCTCCTTGACTTCCAATATCTGGGAATCATTTTATGTATATGATATCACCATATGTAACTGGAGACTTGGTTCTGGTTCTGCAAATCCATCTTTTGCACTAGTCACAATAACTTTTGAAAAAACTAAATTTGCCTAGACTCCTCGTTTCACTGAGGTCTGTGATTTTGAAGCAACACACACGTCCGTCATGAAAAAACTAGCTTTTGTACACATACAAGTTGATGACATGTGTTTTCAATCAAGAATACAGTCTTTTAATTCTCATATCTGGAATATTACAGGCTAATTTTGCTCGGGC</genome_strand>
        <mrna_strand>AGCCATGCAAATCGATATAAGAGATATATAGTTCCAGTATTATCTGTTCAGATGGACTTCTATGTTCGCGTTTTTGTTCGTATATACAC............................................................................................TTCTGCAAGTGATGTGAAAAATACTCCTTTGAAGCTCTCATACGTCTATCAATGCATTGGCTGTGACTCATTTCATCTTCAGACAGTTGGGAGGACCGTCTCAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAGAGTGTCCGATGCCTCCCTGGATTTGGCCCTGCAGTTCCTCAAGAGTGTAGTGATTGTGGTAAGAAATTCAACATGGGTGGACCCATATGGTCTGCCCCCATTCATGATCAAGAATGGGTAGCTGCCATGCTTGCAAATGTGAAATCAATGAAGGAACGCTATCCCGCTTATGAGCGGATCTCTGCTGTATTGACAACTGTATCAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTACCTGATATTCCTCTGTTTCTGAGTTTGCACAATCTCTGTGCAACACTGAAATGCACTTCTCCCTCAGCAGTAATATTTCGCTCTGCTGTGATAAACGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATCGCATATCAGGGACTCATGTGAATCCTTTGGGGTTGAAAACAGATGCTCCTATGAATGTCATTTGGGATATCATGCGTTGCTGG..........................................................................................................................................GTCAGAAATCATCCTGTGAAAGCTCAACCATCTGACCAGTCTGGAAGTGTGATCCTTGCTAAGGAGCCTGTTCTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAATTTTGCTCGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E305682" ref_strand="+" ref_description="SGN-E305682 [cLEX-14-L22]">
      <seq>caaatcgatataagagatatatagttccagtattatctgttcagatggatttctatgttcgcgtttttgttcgtatatacacttctgcaagtgatgtgaaaaatactcctttgaagctctcatatgtctatcaatgcattggctgcgactcatttcatcttcagacagttgggaggacagtctcaaaggataagagtgtccgatgcctccctggatttggccctgcagttcctcaagagtgtagtgattgtggtaagaaattcaacatgggtggacccatatggtctgcccccattcatgatcaagaatgggtagctgccatgcttgcaaatgtgaaatcaatgaaggaacgctatcctgcttatgagcggatctctgctgtattgacaactatatcagaggaactacctgatattcctctgtttctgagtttgcacaatctctgtgcaacactaaaatgcacttctccctcggcagtaatatttcgctctgctgtgatcaacgcaggatatcgcatatcanggactcatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="+" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="92249" stop="96360"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92549" g_stop="92630" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92631" i_stop="92722" i_length="92">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.623" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92723" g_stop="92828" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="188" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92829" i_stop="93558" i_length="730">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93559" g_stop="93771" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="401" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93772" i_stop="94590" i_length="819">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94591" g_stop="94696" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="507" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94697" i_stop="96034" i_length="1338">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96035" g_stop="96060" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="533" r_length="26" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="+" ref_id="SGN-E305682" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305682" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92549" e_stop="92630"/>
          <exon e_start="92723" e_stop="92828"/>
          <exon e_start="93559" e_stop="93771"/>
          <exon e_start="94591" e_stop="94696"/>
          <exon e_start="96035" e_stop="96060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATCGATATAAGAGATATATAGTTCCAGTATTATCTGTTCAGATGGATTTCTATGTTCGCGTTTTTGTTCGTATATACACGTAAGTGTTCATCTTTTCTACAATTTAGTCAATTTTTCATAGGTTATCAACTTCCTCTCTATAGATGCGAGTTTTCTGATAATTGCTTGCAGTTCTGCAAGTGATGTGAAAAATACTCCTTTGAAGCTCTCATATGTCTATCAATGCATTGGCTGCGACTCATTTCATCTTCAGACAGTTGGGAGGACAGTCTCAAAGGTATTTCTACATTCACAATCTTTGAATGTCTTGCTCATACAAACTTCTTGTGCTGGATTGACCAGCTTATACTCTAATCTGGAAATCTTGGTAGATGAAAAAATCAGTGCCTAAAGATGCAGATTCATGGTACCTACTAATGTTCTTTATCAGCCCATAGTCTCACAAGTTTTATAATCCAGCACTTATTGTGTGGAAATTCTTCCTTCAACTCTTGTCATATCCTGCCAAAGAAATGCTTGGACCTCAGGTGGACTGTTGGTTCTAATGATATCTGCTCTGGAGGATGGAGTGCCCCTTGTTTAAGATAAAGCTTAGATGCTGCATTTTGTTATCTGAATTCACAGAATTTATTTTGTTATCTCGCTTATTGAAGATCATAACATCAATTTTCCTTGCTTAAAGAAGAAGATAACATCAAGAAAATAGAACATTTAATCAACTTTAGAAGTCTCCCAGTGTTCTGTTACTGCAAGTGTAACACGATCTAAATCCTATTAGCAAGCTTGTTTCTTCAATTGTTCTTTCTTTCATGCTGTTACCAGAATGATGACCTGCTAGGAATTTGGAGGAATCCCTTTTGGATTCTTTTATGTTCAATGGGGAAGTCCCTCCTCTTTGCCTTAGATCATGAGTTAGTTAGTTGTACCTTTTAATCCTTGGTAGAGACTGTTTTAATACATATTTTCAAATATGGCCAGTTATATGTTTTATTTTTCTGCTTATCTAGGATAAGAGTGTCCGATGCCTCCCTGGATTTGGCCCTGCAGTTCCTCAAGAGTGTAGTGATTGTGGTAAGAAATTCAACATGGGTGGACCCATATGGTCTGCCCCCATTCATGATCAAGAATGGGTAGCTGCCATGCTTGCAAATGTGAAATCAATGAAGGAACGCTATCCTGCTTATGAGCGGATCTCTGCTGTATTGACAACTATATCAGAGGTGTGGTTTGTCTTAATATTTATAGTATGCCTCTGTCCATAAGGCTGTTTCGTTCTTTATTCCTTTTAAATATATCCAGAATATGTTACATACTTTAAAGAAATGAAAACTACTTGAAATCATTAAAGTAACAATTACATCCTTTTTCACTTGTTGCTGATTTAGTACTAAACTCTTTTCCTATGAGAGGCACATAAACCTTTTCTTGATGTTCTTTCGGGGATAAGGAGCAAACAATCTTCTGATCACATGTTATTCAATTGTCCTTTCCTGTTGAATGTAATTCTGCACAGAATCAGGAGATTGAGTTGGCGTTCAAATCCCTAGTATTGTAACGTCTTTTCTTTTCGTTTTGGTATGACAGTTGTGTTCCAATTGTTGAAGAAATATTGCATAATAGTGAAGAAGGTATTTAACGCAATTAGACATCGTAAATTTGTCAATAGGACTTAACCTGCTCTAATGACCACAAATGTGAAGGTTGATCTTGTAATGGGGCTTCGAATTTGTTGAAGGAAAATATAAATTCAGTTAGGAATGCCAGTCCTTCAATCCACTCACAGTTCTACATTGATGAATTTGACAAGTAATGGCATGACTTTTACTGCTGGCACAGCAGCGCAATTTTTTTGGGGGGCAAAGAAACTTTTGTCCTTCACTCGTTATTTGGAGACATTTGTTATTCACTGCAGATCCTATTGATGAGAAATAGTTCAATCAGTTATTTATTCAGTGCAGATCATATTGACGAGGAACAGTTTTATCGGTTATTTTTGGTGGATGTTTTCTAAATTCTGATCCAAGAGTGTGCTTTTGCAGGAACTACCTGATATTCCTCTGTTTCTGAGTTTGCACAATCTCTGTGCAACACTAAAATGCACTTCTCCCTCGGCAGTAATATTTCGCTCTGCTGTGATCAACGCAGGATACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGATGTGCGAACTCGATATTTTACACGACTCTCTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTAACGTTGGCTTGCCACGCATTACTTGACTGTAAAACTCTCACTCTTACCGAACTTGGCCGTAACCTGCCAACCAAAGCGAGAACAAAACATAACATCAAACGAATCGACCGATTGTTAGGTAATCGTCACCTCCACAAAGAGCGACTCGCTGTATACCGTTGGCATGCTAGCTTTATCTGTTCGGGCAATACGATGCCCATTGTACTTGTTGACTGGTCTGATATTCGTGAGCAAAAACGACTTATGGTATTGCGAGCTTCAGTCGCACTACACGGTCGTTCTGTTACTCTTTATGAGAAAGCGTTCCCGCTTTCAGAGCAATGTTCAAAGAAAGCTCATGACCAATTTCTAGCCGACCTTGCGAGCATTCTACCGAGTAACACCACACCGCTCATTGTCAGTGATGCTGGCTTTAAAGTGCCATGGTATAAATCCGTTGAGAAGCTGGGTTGGTACTGGTTAAGTCGAGTAAGAGGAAAAGTACAATATGCAGACCTAGGAGCGGAAAACTGGAAACCTATCAGCAACTTACATGATATGTCATCTAGTCACTCAAAGACTTTAGGCTATAAGAGGCTGACTAAAAGCAATCCAATCTCATGCCAAATTCTATTGTATAAATCTCGCTCTAAAGGCCGAAAAAATCAGCGCTCGACACGGACTCATTGTCACCACCCGTCACCTAAAATCTACTCAGCGTCGGCAAAGGAGCCATGGGTTCTAGCAACTAACTTACCTGTTGAAATTCGAACACCCAAACAACTTGTTAATATCTATTCGAAGCGAATGCAGATTGAAGAAACCTTCCGAGACTTGAAAAGTCCTGCCTACGGACTAGGCCTACGCCATAGCCGAACGAGCAGCTCAGAGCGTTTTGATATCATGCTGCTAATCGCCCTGATGCTTCAACTAACATGTTGGCTTGCGGGCGTTCATGCTCAGAAACAAGGTTGGGACAAGCACTTCCAGGCTAACACAGTCAGAAATCGAAACGTACTCTCAACAGTTCGCTTAGGCATGGAAGTTTTGCGGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGCGCAGGATATCGCATATCAGGGACTCATGTG</genome_strand>
        <mrna_strand>CAAATCGATATAAGAGATATATAGTTCCAGTATTATCTGTTCAGATGGATTTCTATGTTCGCGTTTTTGTTCGTATATACAC............................................................................................TTCTGCAAGTGATGTGAAAAATACTCCTTTGAAGCTCTCATATGTCTATCAATGCATTGGCTGCGACTCATTTCATCTTCAGACAGTTGGGAGGACAGTCTCAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAGAGTGTCCGATGCCTCCCTGGATTTGGCCCTGCAGTTCCTCAAGAGTGTAGTGATTGTGGTAAGAAATTCAACATGGGTGGACCCATATGGTCTGCCCCCATTCATGATCAAGAATGGGTAGCTGCCATGCTTGCAAATGTGAAATCAATGAAGGAACGCTATCCTGCTTATGAGCGGATCTCTGCTGTATTGACAACTATATCAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTACCTGATATTCCTCTGTTTCTGAGTTTGCACAATCTCTGTGCAACACTAAAATGCACTTCTCCCTCGGCAGTAATATTTCGCTCTGCTGTGATCAACGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATCGCATATCANGGACTCATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E208902" ref_strand="+" ref_description="SGN-E208902 [cLEC-51-D10]">
      <seq>catgcttgcaaatgtgaaatcaatgaaggaacgctatcctgcttatgagcggatctctgctgtattgacaactatatcagaggaactacctgatattcctctgtttctgagtttgcacaatctctgtgcaacactaaaatgcacttctccctcggcagtaatatttcgctctgctgtgatcaacgcaggatatcgcatatcagggactcatgtgaatcctttggggttgaaaacagatgctcctatgaatgtcatttgggatatcatgcgttgctgggtcagaaatcatcctgtgaaagcacaaccatctgaccagtctggaagtgtgattcttgctaaggagcctgttctgcaggctaattttgctcgggctgttgcatcccttagccaggcacaagccaagaaggttgcgcgtttcctccctaatcctgagaggaattggggtccaaaactaagggcaggccggcaaggatcaccagtaagcatgtgtctcttttggggtcctaaagcattgaatgcaattagcaaccatggggatggcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="+" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="93390" stop="97302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93690" g_stop="93771" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93772" i_stop="94590" i_length="819">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94591" g_stop="94696" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="188" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94697" i_stop="96034" i_length="1338">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96035" g_stop="96123" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="277" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96124" i_stop="96261" i_length="138">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96262" g_stop="96339" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="355" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96340" i_stop="96817" i_length="478">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96818" g_stop="97002" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="543" r_length="188" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="+" ref_id="SGN-E208902" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208902" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93690" e_stop="93771"/>
          <exon e_start="94591" e_stop="94696"/>
          <exon e_start="96035" e_stop="96123"/>
          <exon e_start="96262" e_stop="96339"/>
          <exon e_start="96818" e_stop="97002"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGCTTGCAAATGTGAAATCAATGAAGGAACGCTATCCTGCTTATGAGCGGATCTCTGCTGTATTGACAACTATATCAGAGGTGTGGTTTGTCTTAATATTTATAGTATGCCTCTGTCCATAAGGCTGTTTCGTTCTTTATTCCTTTTAAATATATCCAGAATATGTTACATACTTTAAAGAAATGAAAACTACTTGAAATCATTAAAGTAACAATTACATCCTTTTTCACTTGTTGCTGATTTAGTACTAAACTCTTTTCCTATGAGAGGCACATAAACCTTTTCTTGATGTTCTTTCGGGGATAAGGAGCAAACAATCTTCTGATCACATGTTATTCAATTGTCCTTTCCTGTTGAATGTAATTCTGCACAGAATCAGGAGATTGAGTTGGCGTTCAAATCCCTAGTATTGTAACGTCTTTTCTTTTCGTTTTGGTATGACAGTTGTGTTCCAATTGTTGAAGAAATATTGCATAATAGTGAAGAAGGTATTTAACGCAATTAGACATCGTAAATTTGTCAATAGGACTTAACCTGCTCTAATGACCACAAATGTGAAGGTTGATCTTGTAATGGGGCTTCGAATTTGTTGAAGGAAAATATAAATTCAGTTAGGAATGCCAGTCCTTCAATCCACTCACAGTTCTACATTGATGAATTTGACAAGTAATGGCATGACTTTTACTGCTGGCACAGCAGCGCAATTTTTTTGGGGGGCAAAGAAACTTTTGTCCTTCACTCGTTATTTGGAGACATTTGTTATTCACTGCAGATCCTATTGATGAGAAATAGTTCAATCAGTTATTTATTCAGTGCAGATCATATTGACGAGGAACAGTTTTATCGGTTATTTTTGGTGGATGTTTTCTAAATTCTGATCCAAGAGTGTGCTTTTGCAGGAACTACCTGATATTCCTCTGTTTCTGAGTTTGCACAATCTCTGTGCAACACTAAAATGCACTTCTCCCTCGGCAGTAATATTTCGCTCTGCTGTGATCAACGCAGGATACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGATGTGCGAACTCGATATTTTACACGACTCTCTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTAACGTTGGCTTGCCACGCATTACTTGACTGTAAAACTCTCACTCTTACCGAACTTGGCCGTAACCTGCCAACCAAAGCGAGAACAAAACATAACATCAAACGAATCGACCGATTGTTAGGTAATCGTCACCTCCACAAAGAGCGACTCGCTGTATACCGTTGGCATGCTAGCTTTATCTGTTCGGGCAATACGATGCCCATTGTACTTGTTGACTGGTCTGATATTCGTGAGCAAAAACGACTTATGGTATTGCGAGCTTCAGTCGCACTACACGGTCGTTCTGTTACTCTTTATGAGAAAGCGTTCCCGCTTTCAGAGCAATGTTCAAAGAAAGCTCATGACCAATTTCTAGCCGACCTTGCGAGCATTCTACCGAGTAACACCACACCGCTCATTGTCAGTGATGCTGGCTTTAAAGTGCCATGGTATAAATCCGTTGAGAAGCTGGGTTGGTACTGGTTAAGTCGAGTAAGAGGAAAAGTACAATATGCAGACCTAGGAGCGGAAAACTGGAAACCTATCAGCAACTTACATGATATGTCATCTAGTCACTCAAAGACTTTAGGCTATAAGAGGCTGACTAAAAGCAATCCAATCTCATGCCAAATTCTATTGTATAAATCTCGCTCTAAAGGCCGAAAAAATCAGCGCTCGACACGGACTCATTGTCACCACCCGTCACCTAAAATCTACTCAGCGTCGGCAAAGGAGCCATGGGTTCTAGCAACTAACTTACCTGTTGAAATTCGAACACCCAAACAACTTGTTAATATCTATTCGAAGCGAATGCAGATTGAAGAAACCTTCCGAGACTTGAAAAGTCCTGCCTACGGACTAGGCCTACGCCATAGCCGAACGAGCAGCTCAGAGCGTTTTGATATCATGCTGCTAATCGCCCTGATGCTTCAACTAACATGTTGGCTTGCGGGCGTTCATGCTCAGAAACAAGGTTGGGACAAGCACTTCCAGGCTAACACAGTCAGAAATCGAAACGTACTCTCAACAGTTCGCTTAGGCATGGAAGTTTTGCGGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGCGCAGGATATCGCATATCAGGGACTCATGTGAATCCTTTGGGGTTGAAAACAGATGCTCCTATGAATGTCATTTGGGATATCATGCGTTGCTGGGTAAGTTTTAATCATTTGCTTGTTTTTGGCAGTTCTTGCTTGATATTCTTTGTATTAGCTTACGCCTTTGCTTGTTTCATATTTTGAAAATAAGACATCCTTCTTCTACCATCTGAGCTGATAATGTTCTATTTGCAGGTCAGAAATCATCCTGTGAAAGCACAACCATCTGACCAGTCTGGAAGTGTGATTCTTGCTAAGGAGCCTGTTCTGCAGGTGAACTTTAACCCTCTGGAAGTGATATTATTTTACCGCATCATTGTCATATGGCATAAAGGATACTTCTTGGTCCAAACTATATTGAATTTATACATATAAAGGTGTAAAAAAAAAGGACAATATTCCTTTTTTAATAAAGGACAAAATATGAATGTGAGATTCTGGTCCATGTTCTTAATAATTCATGCACCCGTCTCCTTGACTTCCAATATCTGGGAATCATTTTATGTATATGATATCACCATATGTAACTGGAGACTTGGTTCTGGTTCTGCAAATCCATCTTTTGCACTAGTCACAATAACTTTTGAAAAAACTAAATTTGCCTAGACTCCTCGTTTCACTGAGGTCTGTGATTTTGAAGCAACACACACGTCCGTCATGAAAAAACTAGCTTTTGTACACATACAAGTTGATGACATGTGTTTTCAATCAAGAATACAGTCTTTTAATTCTCATATCTGGAATATTACAGGCTAATTTTGCTCGGGCTGTTGCATCCCTTAGCCAGGCACAAGCCAAGAAGGTTGCGCGTTTCCTCCCTAATCCTGAGAGGAATTGGGGTCCAAAACTAAGGGCAGGCCGGC-A-GATCACCAGTAAGCATGTGTCTCTTTT-GGGTCCTAAAGCATTGAATGCAATTAGCAACCATGGGGATGGCGA</genome_strand>
        <mrna_strand>CATGCTTGCAAATGTGAAATCAATGAAGGAACGCTATCCTGCTTATGAGCGGATCTCTGCTGTATTGACAACTATATCAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTACCTGATATTCCTCTGTTTCTGAGTTTGCACAATCTCTGTGCAACACTAAAATGCACTTCTCCCTCGGCAGTAATATTTCGCTCTGCTGTGATCAACGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATCGCATATCAGGGACTCATGTGAATCCTTTGGGGTTGAAAACAGATGCTCCTATGAATGTCATTTGGGATATCATGCGTTGCTGG..........................................................................................................................................GTCAGAAATCATCCTGTGAAAGCACAACCATCTGACCAGTCTGGAAGTGTGATTCTTGCTAAGGAGCCTGTTCTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAATTTTGCTCGGGCTGTTGCATCCCTTAGCCAGGCACAAGCCAAGAAGGTTGCGCGTTTCCTCCCTAATCCTGAGAGGAATTGGGGTCCAAAACTAAGGGCAGGCCGGCAAGGATCACCAGTAAGCATGTGTCTCTTTTGGGGTCCTAAAGCATTGAATGCAATTAGCAACCATGGGGATGGCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E370340" ref_strand="+" ref_description="SGN-E370340 [TUS-28-A19]">
      <seq>aacgctatcctgcttatgagcggatctctgctgtattgacaactatatcagaggaactacctgatattcctctgtttctgagtttgcacaatctctgtgcaacactaaaatgcacttctccctcggcagtaatatttcgctctgctgtgatcaacgcaggatatcgcatatcagggactcatgtgaatcctttggggttgaaaacagatgctcctatgaatgtcatttgggatatcatgcgttgctgggtcagaaatcatcctgtgaaagcacaaccatctgaccagtctggaagtgtgattcttgctaaggagcctgttctgcaggctaattttgctcgggctgttgcatcccttagccaggcacaagccaagaaggttgcgcgtttcctccctaatcctgagaggaattggggtccaaaactaagggcaggccggcagatcaccagtaagcatgtgtctcttttgggtcctaaagcattgaatgcaattagcaaccatggggatggcgagggtagcaacaatgagaacggcgatgtcagcaaccatgagaatggcgatggtagcaaccatgagaatggtaatggtagcaaccatgaggatgtcgaggagcctgcagccaagcgtaagaagaccgaagaatctgattcataactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="+" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="93419" stop="97448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93719" g_stop="93771" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93772" i_stop="94590" i_length="819">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94591" g_stop="94696" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="159" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94697" i_stop="96034" i_length="1338">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96035" g_stop="96123" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="248" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96124" i_stop="96261" i_length="138">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96262" g_stop="96339" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="326" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96340" i_stop="96817" i_length="478">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96818" g_stop="97148" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="657" r_length="331" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="+" ref_id="SGN-E370340" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370340" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93719" e_stop="93771"/>
          <exon e_start="94591" e_stop="94696"/>
          <exon e_start="96035" e_stop="96123"/>
          <exon e_start="96262" e_stop="96339"/>
          <exon e_start="96818" e_stop="97148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGCTATCCTGCTTATGAGCGGATCTCTGCTGTATTGACAACTATATCAGAGGTGTGGTTTGTCTTAATATTTATAGTATGCCTCTGTCCATAAGGCTGTTTCGTTCTTTATTCCTTTTAAATATATCCAGAATATGTTACATACTTTAAAGAAATGAAAACTACTTGAAATCATTAAAGTAACAATTACATCCTTTTTCACTTGTTGCTGATTTAGTACTAAACTCTTTTCCTATGAGAGGCACATAAACCTTTTCTTGATGTTCTTTCGGGGATAAGGAGCAAACAATCTTCTGATCACATGTTATTCAATTGTCCTTTCCTGTTGAATGTAATTCTGCACAGAATCAGGAGATTGAGTTGGCGTTCAAATCCCTAGTATTGTAACGTCTTTTCTTTTCGTTTTGGTATGACAGTTGTGTTCCAATTGTTGAAGAAATATTGCATAATAGTGAAGAAGGTATTTAACGCAATTAGACATCGTAAATTTGTCAATAGGACTTAACCTGCTCTAATGACCACAAATGTGAAGGTTGATCTTGTAATGGGGCTTCGAATTTGTTGAAGGAAAATATAAATTCAGTTAGGAATGCCAGTCCTTCAATCCACTCACAGTTCTACATTGATGAATTTGACAAGTAATGGCATGACTTTTACTGCTGGCACAGCAGCGCAATTTTTTTGGGGGGCAAAGAAACTTTTGTCCTTCACTCGTTATTTGGAGACATTTGTTATTCACTGCAGATCCTATTGATGAGAAATAGTTCAATCAGTTATTTATTCAGTGCAGATCATATTGACGAGGAACAGTTTTATCGGTTATTTTTGGTGGATGTTTTCTAAATTCTGATCCAAGAGTGTGCTTTTGCAGGAACTACCTGATATTCCTCTGTTTCTGAGTTTGCACAATCTCTGTGCAACACTAAAATGCACTTCTCCCTCGGCAGTAATATTTCGCTCTGCTGTGATCAACGCAGGATACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGATGTGCGAACTCGATATTTTACACGACTCTCTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTAACGTTGGCTTGCCACGCATTACTTGACTGTAAAACTCTCACTCTTACCGAACTTGGCCGTAACCTGCCAACCAAAGCGAGAACAAAACATAACATCAAACGAATCGACCGATTGTTAGGTAATCGTCACCTCCACAAAGAGCGACTCGCTGTATACCGTTGGCATGCTAGCTTTATCTGTTCGGGCAATACGATGCCCATTGTACTTGTTGACTGGTCTGATATTCGTGAGCAAAAACGACTTATGGTATTGCGAGCTTCAGTCGCACTACACGGTCGTTCTGTTACTCTTTATGAGAAAGCGTTCCCGCTTTCAGAGCAATGTTCAAAGAAAGCTCATGACCAATTTCTAGCCGACCTTGCGAGCATTCTACCGAGTAACACCACACCGCTCATTGTCAGTGATGCTGGCTTTAAAGTGCCATGGTATAAATCCGTTGAGAAGCTGGGTTGGTACTGGTTAAGTCGAGTAAGAGGAAAAGTACAATATGCAGACCTAGGAGCGGAAAACTGGAAACCTATCAGCAACTTACATGATATGTCATCTAGTCACTCAAAGACTTTAGGCTATAAGAGGCTGACTAAAAGCAATCCAATCTCATGCCAAATTCTATTGTATAAATCTCGCTCTAAAGGCCGAAAAAATCAGCGCTCGACACGGACTCATTGTCACCACCCGTCACCTAAAATCTACTCAGCGTCGGCAAAGGAGCCATGGGTTCTAGCAACTAACTTACCTGTTGAAATTCGAACACCCAAACAACTTGTTAATATCTATTCGAAGCGAATGCAGATTGAAGAAACCTTCCGAGACTTGAAAAGTCCTGCCTACGGACTAGGCCTACGCCATAGCCGAACGAGCAGCTCAGAGCGTTTTGATATCATGCTGCTAATCGCCCTGATGCTTCAACTAACATGTTGGCTTGCGGGCGTTCATGCTCAGAAACAAGGTTGGGACAAGCACTTCCAGGCTAACACAGTCAGAAATCGAAACGTACTCTCAACAGTTCGCTTAGGCATGGAAGTTTTGCGGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGCGCAGGATATCGCATATCAGGGACTCATGTGAATCCTTTGGGGTTGAAAACAGATGCTCCTATGAATGTCATTTGGGATATCATGCGTTGCTGGGTAAGTTTTAATCATTTGCTTGTTTTTGGCAGTTCTTGCTTGATATTCTTTGTATTAGCTTACGCCTTTGCTTGTTTCATATTTTGAAAATAAGACATCCTTCTTCTACCATCTGAGCTGATAATGTTCTATTTGCAGGTCAGAAATCATCCTGTGAAAGCACAACCATCTGACCAGTCTGGAAGTGTGATTCTTGCTAAGGAGCCTGTTCTGCAGGTGAACTTTAACCCTCTGGAAGTGATATTATTTTACCGCATCATTGTCATATGGCATAAAGGATACTTCTTGGTCCAAACTATATTGAATTTATACATATAAAGGTGTAAAAAAAAAGGACAATATTCCTTTTTTAATAAAGGACAAAATATGAATGTGAGATTCTGGTCCATGTTCTTAATAATTCATGCACCCGTCTCCTTGACTTCCAATATCTGGGAATCATTTTATGTATATGATATCACCATATGTAACTGGAGACTTGGTTCTGGTTCTGCAAATCCATCTTTTGCACTAGTCACAATAACTTTTGAAAAAACTAAATTTGCCTAGACTCCTCGTTTCACTGAGGTCTGTGATTTTGAAGCAACACACACGTCCGTCATGAAAAAACTAGCTTTTGTACACATACAAGTTGATGACATGTGTTTTCAATCAAGAATACAGTCTTTTAATTCTCATATCTGGAATATTACAGGCTAATTTTGCTCGGGCTGTTGCATCCCTTAGCCAGGCACAAGCCAAGAAGGTTGCGCGTTTCCTCCCTAATCCTGAGAGGAATTGGGGTCCAAAACTAAGGGCAGGCCGGCAGATCACCAGTAAGCATGTGTCTCTTTTGGGTCCTAAAGCATTGAATGCAATTAGCAACCATGGGGATGGCGAGGGTAGCAACAATGAGAACGGCGATGTCAGCAACCATGAGAATGGCGATGGTAGCAACCATGAGAATGGTAATGGTAGCAACCATGAGGATGTCGAGGAGCCTGCAGCCAAGCGTAAGAAGACCGAAGAATCTGATTCATAACTTA</genome_strand>
        <mrna_strand>AACGCTATCCTGCTTATGAGCGGATCTCTGCTGTATTGACAACTATATCAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTACCTGATATTCCTCTGTTTCTGAGTTTGCACAATCTCTGTGCAACACTAAAATGCACTTCTCCCTCGGCAGTAATATTTCGCTCTGCTGTGATCAACGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATCGCATATCAGGGACTCATGTGAATCCTTTGGGGTTGAAAACAGATGCTCCTATGAATGTCATTTGGGATATCATGCGTTGCTGG..........................................................................................................................................GTCAGAAATCATCCTGTGAAAGCACAACCATCTGACCAGTCTGGAAGTGTGATTCTTGCTAAGGAGCCTGTTCTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAATTTTGCTCGGGCTGTTGCATCCCTTAGCCAGGCACAAGCCAAGAAGGTTGCGCGTTTCCTCCCTAATCCTGAGAGGAATTGGGGTCCAAAACTAAGGGCAGGCCGGCAGATCACCAGTAAGCATGTGTCTCTTTTGGGTCCTAAAGCATTGAATGCAATTAGCAACCATGGGGATGGCGAGGGTAGCAACAATGAGAACGGCGATGTCAGCAACCATGAGAATGGCGATGGTAGCAACCATGAGAATGGTAATGGTAGCAACCATGAGGATGTCGAGGAGCCTGCAGCCAAGCGTAAGAAGACCGAAGAATCTGATTCATAACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E270700" ref_strand="+" ref_description="SGN-E270700 [cLEM-6-B15]">
      <seq>aacgctatcctgcttatgagcggatctctgctgtattgacaactatatcagaggaactacctgatattcctctgtttctgagtttgcacaatctctgtgcaacactaaaatgcacttctccctcggcagtaatatttcgctctgctgtgatcaacgcaggatatcgcatatcaaggactcatgtgaatcctttggggttgaaaacagatgctcctatgaatgtcatttgggatatcatgcgttgctgggtcagaaatcatcctgtgaaagcacaaccatctgaccagtctggaagtgtgattcttgctaaggagcctgttctgcaggctaattttgctcgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="+" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="93419" stop="97135"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93719" g_stop="93771" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93772" i_stop="94590" i_length="819">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94591" g_stop="94696" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="159" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94697" i_stop="96034" i_length="1338">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96035" g_stop="96123" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="248" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96124" i_stop="96261" i_length="138">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96262" g_stop="96339" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="326" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96340" i_stop="96817" i_length="478">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96818" g_stop="96835" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="344" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="+" ref_id="SGN-E270700" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>344</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270700" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93719" e_stop="93771"/>
          <exon e_start="94591" e_stop="94696"/>
          <exon e_start="96035" e_stop="96123"/>
          <exon e_start="96262" e_stop="96339"/>
          <exon e_start="96818" e_stop="96835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGCTATCCTGCTTATGAGCGGATCTCTGCTGTATTGACAACTATATCAGAGGTGTGGTTTGTCTTAATATTTATAGTATGCCTCTGTCCATAAGGCTGTTTCGTTCTTTATTCCTTTTAAATATATCCAGAATATGTTACATACTTTAAAGAAATGAAAACTACTTGAAATCATTAAAGTAACAATTACATCCTTTTTCACTTGTTGCTGATTTAGTACTAAACTCTTTTCCTATGAGAGGCACATAAACCTTTTCTTGATGTTCTTTCGGGGATAAGGAGCAAACAATCTTCTGATCACATGTTATTCAATTGTCCTTTCCTGTTGAATGTAATTCTGCACAGAATCAGGAGATTGAGTTGGCGTTCAAATCCCTAGTATTGTAACGTCTTTTCTTTTCGTTTTGGTATGACAGTTGTGTTCCAATTGTTGAAGAAATATTGCATAATAGTGAAGAAGGTATTTAACGCAATTAGACATCGTAAATTTGTCAATAGGACTTAACCTGCTCTAATGACCACAAATGTGAAGGTTGATCTTGTAATGGGGCTTCGAATTTGTTGAAGGAAAATATAAATTCAGTTAGGAATGCCAGTCCTTCAATCCACTCACAGTTCTACATTGATGAATTTGACAAGTAATGGCATGACTTTTACTGCTGGCACAGCAGCGCAATTTTTTTGGGGGGCAAAGAAACTTTTGTCCTTCACTCGTTATTTGGAGACATTTGTTATTCACTGCAGATCCTATTGATGAGAAATAGTTCAATCAGTTATTTATTCAGTGCAGATCATATTGACGAGGAACAGTTTTATCGGTTATTTTTGGTGGATGTTTTCTAAATTCTGATCCAAGAGTGTGCTTTTGCAGGAACTACCTGATATTCCTCTGTTTCTGAGTTTGCACAATCTCTGTGCAACACTAAAATGCACTTCTCCCTCGGCAGTAATATTTCGCTCTGCTGTGATCAACGCAGGATACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGATGTGCGAACTCGATATTTTACACGACTCTCTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTAACGTTGGCTTGCCACGCATTACTTGACTGTAAAACTCTCACTCTTACCGAACTTGGCCGTAACCTGCCAACCAAAGCGAGAACAAAACATAACATCAAACGAATCGACCGATTGTTAGGTAATCGTCACCTCCACAAAGAGCGACTCGCTGTATACCGTTGGCATGCTAGCTTTATCTGTTCGGGCAATACGATGCCCATTGTACTTGTTGACTGGTCTGATATTCGTGAGCAAAAACGACTTATGGTATTGCGAGCTTCAGTCGCACTACACGGTCGTTCTGTTACTCTTTATGAGAAAGCGTTCCCGCTTTCAGAGCAATGTTCAAAGAAAGCTCATGACCAATTTCTAGCCGACCTTGCGAGCATTCTACCGAGTAACACCACACCGCTCATTGTCAGTGATGCTGGCTTTAAAGTGCCATGGTATAAATCCGTTGAGAAGCTGGGTTGGTACTGGTTAAGTCGAGTAAGAGGAAAAGTACAATATGCAGACCTAGGAGCGGAAAACTGGAAACCTATCAGCAACTTACATGATATGTCATCTAGTCACTCAAAGACTTTAGGCTATAAGAGGCTGACTAAAAGCAATCCAATCTCATGCCAAATTCTATTGTATAAATCTCGCTCTAAAGGCCGAAAAAATCAGCGCTCGACACGGACTCATTGTCACCACCCGTCACCTAAAATCTACTCAGCGTCGGCAAAGGAGCCATGGGTTCTAGCAACTAACTTACCTGTTGAAATTCGAACACCCAAACAACTTGTTAATATCTATTCGAAGCGAATGCAGATTGAAGAAACCTTCCGAGACTTGAAAAGTCCTGCCTACGGACTAGGCCTACGCCATAGCCGAACGAGCAGCTCAGAGCGTTTTGATATCATGCTGCTAATCGCCCTGATGCTTCAACTAACATGTTGGCTTGCGGGCGTTCATGCTCAGAAACAAGGTTGGGACAAGCACTTCCAGGCTAACACAGTCAGAAATCGAAACGTACTCTCAACAGTTCGCTTAGGCATGGAAGTTTTGCGGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGCGCAGGATATCGCATATCAGGGACTCATGTGAATCCTTTGGGGTTGAAAACAGATGCTCCTATGAATGTCATTTGGGATATCATGCGTTGCTGGGTAAGTTTTAATCATTTGCTTGTTTTTGGCAGTTCTTGCTTGATATTCTTTGTATTAGCTTACGCCTTTGCTTGTTTCATATTTTGAAAATAAGACATCCTTCTTCTACCATCTGAGCTGATAATGTTCTATTTGCAGGTCAGAAATCATCCTGTGAAAGCACAACCATCTGACCAGTCTGGAAGTGTGATTCTTGCTAAGGAGCCTGTTCTGCAGGTGAACTTTAACCCTCTGGAAGTGATATTATTTTACCGCATCATTGTCATATGGCATAAAGGATACTTCTTGGTCCAAACTATATTGAATTTATACATATAAAGGTGTAAAAAAAAAGGACAATATTCCTTTTTTAATAAAGGACAAAATATGAATGTGAGATTCTGGTCCATGTTCTTAATAATTCATGCACCCGTCTCCTTGACTTCCAATATCTGGGAATCATTTTATGTATATGATATCACCATATGTAACTGGAGACTTGGTTCTGGTTCTGCAAATCCATCTTTTGCACTAGTCACAATAACTTTTGAAAAAACTAAATTTGCCTAGACTCCTCGTTTCACTGAGGTCTGTGATTTTGAAGCAACACACACGTCCGTCATGAAAAAACTAGCTTTTGTACACATACAAGTTGATGACATGTGTTTTCAATCAAGAATACAGTCTTTTAATTCTCATATCTGGAATATTACAGGCTAATTTTGCTCGGGCT</genome_strand>
        <mrna_strand>AACGCTATCCTGCTTATGAGCGGATCTCTGCTGTATTGACAACTATATCAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTACCTGATATTCCTCTGTTTCTGAGTTTGCACAATCTCTGTGCAACACTAAAATGCACTTCTCCCTCGGCAGTAATATTTCGCTCTGCTGTGATCAACGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATCGCATATCAAGGACTCATGTGAATCCTTTGGGGTTGAAAACAGATGCTCCTATGAATGTCATTTGGGATATCATGCGTTGCTGG..........................................................................................................................................GTCAGAAATCATCCTGTGAAAGCACAACCATCTGACCAGTCTGGAAGTGTGATTCTTGCTAAGGAGCCTGTTCTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAATTTTGCTCGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E706048" ref_strand="+" ref_description="SGN-E706048 [FA28DD11]">
      <seq>cacaaatgtgaaggttgatcttgtaatggggcttcgaatttgttgaaggaaaatataaattcagttaggaatgccagtccttcaatccactcacagttctacattgatgaatttgacaagtaatggcatgacttttactgctggcacagcagcgcaatttttttggggggcaaagaaacttttgtccttcactcgttatttggagacatttgttattcactgcagatcctattgatgagaaatagttcaatcagttatttattcagtgcagatcatattgacgaggaacagttttatcggttatttttggtggatgttttctaaattctgatccaagagtgtgcttttgcaggaactacctgatattcctctgtttctgagtttgcacaatctctgtgcaacactaaaatgcacttctccctcggcagtaatatttcgctctgctgtgatcaacgcaggatatcgcatatcagggactcatgtgaatcctttggggttgaaaacagatgctcctatgaatgtcatttgggatatcatgcgttgctgggtcagaaatcatcctgtgaaagcacaaccatctgaccagtctggaagtgtgattcttgctaaggagcctgttctgcaggctaattttgctcgggctgttgcatcccttagccaggcacaagccaagaaggttgcgcgtttcctccctaatcctgagaggaattggggtccaaaactaagggcaggccggcagatcaccagtaagcatgtgtctcttttgggtcctaaagcattgaatgcaattagcaaccatggggatggcgagggtaacaacaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="+" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="93939" stop="97316"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94239" g_stop="94696" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="458" r_length="458" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94697" i_stop="96034" i_length="1338">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96035" g_stop="96123" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="547" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96124" i_stop="96261" i_length="138">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96262" g_stop="96339" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="625" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96340" i_stop="96817" i_length="478">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96818" g_stop="97016" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="824" r_length="199" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="+" ref_id="SGN-E706048" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>824</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94239" e_stop="94696"/>
          <exon e_start="96035" e_stop="96123"/>
          <exon e_start="96262" e_stop="96339"/>
          <exon e_start="96818" e_stop="97016"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAATGTGAAGGTTGATCTTGTAATGGGGCTTCGAATTTGTTGAAGGAAAATATAAATTCAGTTAGGAATGCCAGTCCTTCAATCCACTCACAGTTCTACATTGATGAATTTGACAAGTAATGGCATGACTTTTACTGCTGGCACAGCAGCGCAATTTTTTTGGGGGGCAAAGAAACTTTTGTCCTTCACTCGTTATTTGGAGACATTTGTTATTCACTGCAGATCCTATTGATGAGAAATAGTTCAATCAGTTATTTATTCAGTGCAGATCATATTGACGAGGAACAGTTTTATCGGTTATTTTTGGTGGATGTTTTCTAAATTCTGATCCAAGAGTGTGCTTTTGCAGGAACTACCTGATATTCCTCTGTTTCTGAGTTTGCACAATCTCTGTGCAACACTAAAATGCACTTCTCCCTCGGCAGTAATATTTCGCTCTGCTGTGATCAACGCAGGATACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGATGTGCGAACTCGATATTTTACACGACTCTCTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTAACGTTGGCTTGCCACGCATTACTTGACTGTAAAACTCTCACTCTTACCGAACTTGGCCGTAACCTGCCAACCAAAGCGAGAACAAAACATAACATCAAACGAATCGACCGATTGTTAGGTAATCGTCACCTCCACAAAGAGCGACTCGCTGTATACCGTTGGCATGCTAGCTTTATCTGTTCGGGCAATACGATGCCCATTGTACTTGTTGACTGGTCTGATATTCGTGAGCAAAAACGACTTATGGTATTGCGAGCTTCAGTCGCACTACACGGTCGTTCTGTTACTCTTTATGAGAAAGCGTTCCCGCTTTCAGAGCAATGTTCAAAGAAAGCTCATGACCAATTTCTAGCCGACCTTGCGAGCATTCTACCGAGTAACACCACACCGCTCATTGTCAGTGATGCTGGCTTTAAAGTGCCATGGTATAAATCCGTTGAGAAGCTGGGTTGGTACTGGTTAAGTCGAGTAAGAGGAAAAGTACAATATGCAGACCTAGGAGCGGAAAACTGGAAACCTATCAGCAACTTACATGATATGTCATCTAGTCACTCAAAGACTTTAGGCTATAAGAGGCTGACTAAAAGCAATCCAATCTCATGCCAAATTCTATTGTATAAATCTCGCTCTAAAGGCCGAAAAAATCAGCGCTCGACACGGACTCATTGTCACCACCCGTCACCTAAAATCTACTCAGCGTCGGCAAAGGAGCCATGGGTTCTAGCAACTAACTTACCTGTTGAAATTCGAACACCCAAACAACTTGTTAATATCTATTCGAAGCGAATGCAGATTGAAGAAACCTTCCGAGACTTGAAAAGTCCTGCCTACGGACTAGGCCTACGCCATAGCCGAACGAGCAGCTCAGAGCGTTTTGATATCATGCTGCTAATCGCCCTGATGCTTCAACTAACATGTTGGCTTGCGGGCGTTCATGCTCAGAAACAAGGTTGGGACAAGCACTTCCAGGCTAACACAGTCAGAAATCGAAACGTACTCTCAACAGTTCGCTTAGGCATGGAAGTTTTGCGGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGCGCAGGATATCGCATATCAGGGACTCATGTGAATCCTTTGGGGTTGAAAACAGATGCTCCTATGAATGTCATTTGGGATATCATGCGTTGCTGGGTAAGTTTTAATCATTTGCTTGTTTTTGGCAGTTCTTGCTTGATATTCTTTGTATTAGCTTACGCCTTTGCTTGTTTCATATTTTGAAAATAAGACATCCTTCTTCTACCATCTGAGCTGATAATGTTCTATTTGCAGGTCAGAAATCATCCTGTGAAAGCACAACCATCTGACCAGTCTGGAAGTGTGATTCTTGCTAAGGAGCCTGTTCTGCAGGTGAACTTTAACCCTCTGGAAGTGATATTATTTTACCGCATCATTGTCATATGGCATAAAGGATACTTCTTGGTCCAAACTATATTGAATTTATACATATAAAGGTGTAAAAAAAAAGGACAATATTCCTTTTTTAATAAAGGACAAAATATGAATGTGAGATTCTGGTCCATGTTCTTAATAATTCATGCACCCGTCTCCTTGACTTCCAATATCTGGGAATCATTTTATGTATATGATATCACCATATGTAACTGGAGACTTGGTTCTGGTTCTGCAAATCCATCTTTTGCACTAGTCACAATAACTTTTGAAAAAACTAAATTTGCCTAGACTCCTCGTTTCACTGAGGTCTGTGATTTTGAAGCAACACACACGTCCGTCATGAAAAAACTAGCTTTTGTACACATACAAGTTGATGACATGTGTTTTCAATCAAGAATACAGTCTTTTAATTCTCATATCTGGAATATTACAGGCTAATTTTGCTCGGGCTGTTGCATCCCTTAGCCAGGCACAAGCCAAGAAGGTTGCGCGTTTCCTCCCTAATCCTGAGAGGAATTGGGGTCCAAAACTAAGGGCAGGCCGGCAGATCACCAGTAAGCATGTGTCTCTTTTGGGTCCTAAAGCATTGAATGCAATTAGCAACCATGGGGATGGCGAGGGTAGCAACAATG</genome_strand>
        <mrna_strand>CACAAATGTGAAGGTTGATCTTGTAATGGGGCTTCGAATTTGTTGAAGGAAAATATAAATTCAGTTAGGAATGCCAGTCCTTCAATCCACTCACAGTTCTACATTGATGAATTTGACAAGTAATGGCATGACTTTTACTGCTGGCACAGCAGCGCAATTTTTTTGGGGGGCAAAGAAACTTTTGTCCTTCACTCGTTATTTGGAGACATTTGTTATTCACTGCAGATCCTATTGATGAGAAATAGTTCAATCAGTTATTTATTCAGTGCAGATCATATTGACGAGGAACAGTTTTATCGGTTATTTTTGGTGGATGTTTTCTAAATTCTGATCCAAGAGTGTGCTTTTGCAGGAACTACCTGATATTCCTCTGTTTCTGAGTTTGCACAATCTCTGTGCAACACTAAAATGCACTTCTCCCTCGGCAGTAATATTTCGCTCTGCTGTGATCAACGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATCGCATATCAGGGACTCATGTGAATCCTTTGGGGTTGAAAACAGATGCTCCTATGAATGTCATTTGGGATATCATGCGTTGCTGG..........................................................................................................................................GTCAGAAATCATCCTGTGAAAGCACAACCATCTGACCAGTCTGGAAGTGTGATTCTTGCTAAGGAGCCTGTTCTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAATTTTGCTCGGGCTGTTGCATCCCTTAGCCAGGCACAAGCCAAGAAGGTTGCGCGTTTCCTCCCTAATCCTGAGAGGAATTGGGGTCCAAAACTAAGGGCAGGCCGGCAGATCACCAGTAAGCATGTGTCTCTTTTGGGTCCTAAAGCATTGAATGCAATTAGCAACCATGGGGATGGCGAGGGTAACAACAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E589691" ref_strand="-" ref_description="SGN-E589691 [43271]">
      <seq>ctcctgctgtgataaacgcaaggatatcgcataatcagggactcatgtgaatcctttgggggttgaaaaacagatgctccctatgaatggtcatttgggatatcatgcgttgctgggtcagaaatcatcctgtgaaagctcaaccatctgaccagtctggaagtgtgatccttgctaaggagcctgttctgcaggctaattttgctcgggctgttgcatcccttagccaggcacaagccaagaaggttgctcgtttcctccctaatcctgagaggaattggggtccaaaactaagggcaggccggcagatcaccagtaagcatgtgtctcttttgggtcctaaagcattgaatgcaatgaacaaccatgaaattggcgagggtagcaaccatgagaatggcgatggtagcaaccatgagaatggtgatggtagcaaccatgaggatgtcgaggagcctgcagccaagcgtaagaagaccgaagaatctgattcataacttatatatcttggccaagtgtctgcagttattatcccatcataatccatctcttctgctgcatgtttcttgcagagtgagatccatcctctttctcaaaactgtgaaaacgcctatcgataatggggaggatttcatcttttttatctcgagtactttttaatttttaaaggtagtaaggctatttatatttattttgtttttcccattttacctttatttcaatcttaattccagttgctgtattaaattttgattttgattttcatttatcagaaaactactgtgtaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="+" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="95726" stop="97737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96035" g_stop="96123" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="116" r_length="94" r_score="0.888"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96124" i_stop="96261" i_length="138">
            <donor d_prob="0.994" d_score="0.87"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96262" g_stop="96339" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="194" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96340" i_stop="96817" i_length="478">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96818" g_stop="97437" g_length="620"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="789" r_length="595" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="+" ref_id="SGN-E589691" ref_strand="-">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>787</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E589691" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="96035" e_stop="96123"/>
          <exon e_start="96262" e_stop="96339"/>
          <exon e_start="96818" e_stop="97437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATCGCATA-TCAGGGACTCATGTGAATCCTTTGG-GGTTGAA-AACAGATGCT-CCTATGAAT-GTCATTTGGGATATCATGCGTTGCTGGGTAAGTTTTAATCATTTGCTTGTTTTTGGCAGTTCTTGCTTGATATTCTTTGTATTAGCTTACGCCTTTGCTTGTTTCATATTTTGAAAATAAGACATCCTTCTTCTACCATCTGAGCTGATAATGTTCTATTTGCAGGTCAGAAATCATCCTGTGAAAGCACAACCATCTGACCAGTCTGGAAGTGTGATTCTTGCTAAGGAGCCTGTTCTGCAGGTGAACTTTAACCCTCTGGAAGTGATATTATTTTACCGCATCATTGTCATATGGCATAAAGGATACTTCTTGGTCCAAACTATATTGAATTTATACATATAAAGGTGTAAAAAAAAAGGACAATATTCCTTTTTTAATAAAGGACAAAATATGAATGTGAGATTCTGGTCCATGTTCTTAATAATTCATGCACCCGTCTCCTTGACTTCCAATATCTGGGAATCATTTTATGTATATGATATCACCATATGTAACTGGAGACTTGGTTCTGGTTCTGCAAATCCATCTTTTGCACTAGTCACAATAACTTTTGAAAAAACTAAATTTGCCTAGACTCCTCGTTTCACTGAGGTCTGTGATTTTGAAGCAACACACACGTCCGTCATGAAAAAACTAGCTTTTGTACACATACAAGTTGATGACATGTGTTTTCAATCAAGAATACAGTCTTTTAATTCTCATATCTGGAATATTACAGGCTAATTTTGCTCGGGCTGTTGCATCCCTTAGCCAGGCACAAGCCAAGAAGGTTGCGCGTTTCCTCCCTAATCCTGAGAGGAATTGGGGTCCAAAACTAAGGGCAGGCCGGCAGATCACCAGTAAGCATGTGTCTCTTTTGGGTCCTAAAGCATTGAATGCAATTAGCAACCATGGGGATGGCGAGGGTAGCAACAATGAGAACGGCGATGTCAGCAACCATGAGAATGGCGATGGTAGCAACCATGAGAATGGTAATGGTAGCAACCATGAGGATGTCGAGGAGCCTGCAGCCAAGCGTAAGAAGACCGAAGAATCTGATTCATAACTTATATATCTTGGCCAAGTGTCTGCAGTTTTTATCCCATCATAATCCATCTCTTCTGCTGCAT-TTTCTTGCAGAGTGAGATCCATCTTCTTTCTGATAACTGTGAAAACGTCTATCGATAATGGGGAGGATTTCATCTTGTTTATCTCAAGTATACTTTTTAATTTTTAAAGGTATTTTAGGCTATTTATATTTATTTTGTTTGTCCCTTTTTTCCTTCATTTCAATCTTAATTCCAG-TGCTGTATTAAATTTTGTTTTTCATTTTCATTTATCAGAAAACTACTCTGTAAC</genome_strand>
        <mrna_strand>GATATCGCATAATCAGGGACTCATGTGAATCCTTTGGGGGTTGAAAAACAGATGCTCCCTATGAATGGTCATTTGGGATATCATGCGTTGCTGG..........................................................................................................................................GTCAGAAATCATCCTGTGAAAGCTCAACCATCTGACCAGTCTGGAAGTGTGATCCTTGCTAAGGAGCCTGTTCTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAATTTTGCTCGGGCTGTTGCATCCCTTAGCCAGGCACAAGCCAAGAAGGTTGCTCGTTTCCTCCCTAATCCTGAGAGGAATTGGGGTCCAAAACTAAGGGCAGGCCGGCAGATCACCAGTAAGCATGTGTCTCTTTTGGGTCCTAAAGCATTGAATGCAA-T-G-AA-CA-----A---CCA---T-G-AA-ATTG-G--C-GAG-GGT-AGCAACCATGAGAATGGCGATGGTAGCAACCATGAGAATGGTGATGGTAGCAACCATGAGGATGTCGAGGAGCCTGCAGCCAAGCGTAAGAAGACCGAAGAATCTGATTCATAACTTATATATCTTGGCCAAGTGTCTGCAGTTATTATCCCATCATAATCCATCTCTTCTGCTGCATGTTTCTTGCAGAGTGAGATCCATCCTCTTTCTCAAAACTGTGAAAACGCCTATCGATAATGGGGAGGATTTCATCTTTTTTATCTCGAG--TACTTTTTAATTTTTAAAGGTA-GTAAGGCTATTTATATTTATTTTGTTTTTCCCATTTTACCTTTATTTCAATCTTAATTCCAGTTGCTGTATTAAATTTTGATTTTGATTTTCATTTATCAGAAAACTACTGTGTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E418638" ref_strand="-" ref_description="SGN-E418638 [STM-27-P10]">
      <seq>ggatatcatgcgttgctgggtcagaaatcatcctgtgaaagctcaaccatctgaccagtctggaagtgtgatccttgctaaggagcctgttctgcaggctaattttgctcgggctgttgcatcccttagccaggcacaagccaagaaggttgctcgtttcctccctaatcctgagaggaattggggtccaaaactaagggcaggtcggcagatcaccagtaagcatgtgtctcttttgggtcctaaagcattgaatgcaatgaacaaccatgaaattggcgagggtagtaaccatgagaatggcgatggtagcaaccatgagaatggtgatggtagcaaccatgaggatgtcaaggagcctgcagccaagcgtaagaagaccgaagaatctgattcataacttatatatcttggccaagtgtctgcagttattatcccatcataatccatctcttctgctgcattttcttgcagagtgagatccatcctctttctgataactgtgaaaacgcctatcgataatggggaggatttcttcttgtttatctcaagtactttttaatttttaaaggaagtaaggctatttatatttattttgtttgtccctttttacctttatttcaatcttaattccagttgctgtattaaattttgattttgattttcatttaacagaaaactactgttaaaaaaaaagagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="+" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="95805" stop="97738"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96105" g_stop="96123" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96124" i_stop="96261" i_length="138">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96262" g_stop="96339" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="97" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96340" i_stop="96817" i_length="478">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96818" g_stop="97432" g_length="615"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="686" r_length="589" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="688" polyA_stop="698"/>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="+" ref_id="SGN-E418638" ref_strand="-">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.017" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E418638" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="96105" e_stop="96123"/>
          <exon e_start="96262" e_stop="96339"/>
          <exon e_start="96818" e_stop="97432"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATATCATGCGTTGCTGGGTAAGTTTTAATCATTTGCTTGTTTTTGGCAGTTCTTGCTTGATATTCTTTGTATTAGCTTACGCCTTTGCTTGTTTCATATTTTGAAAATAAGACATCCTTCTTCTACCATCTGAGCTGATAATGTTCTATTTGCAGGTCAGAAATCATCCTGTGAAAGCACAACCATCTGACCAGTCTGGAAGTGTGATTCTTGCTAAGGAGCCTGTTCTGCAGGTGAACTTTAACCCTCTGGAAGTGATATTATTTTACCGCATCATTGTCATATGGCATAAAGGATACTTCTTGGTCCAAACTATATTGAATTTATACATATAAAGGTGTAAAAAAAAAGGACAATATTCCTTTTTTAATAAAGGACAAAATATGAATGTGAGATTCTGGTCCATGTTCTTAATAATTCATGCACCCGTCTCCTTGACTTCCAATATCTGGGAATCATTTTATGTATATGATATCACCATATGTAACTGGAGACTTGGTTCTGGTTCTGCAAATCCATCTTTTGCACTAGTCACAATAACTTTTGAAAAAACTAAATTTGCCTAGACTCCTCGTTTCACTGAGGTCTGTGATTTTGAAGCAACACACACGTCCGTCATGAAAAAACTAGCTTTTGTACACATACAAGTTGATGACATGTGTTTTCAATCAAGAATACAGTCTTTTAATTCTCATATCTGGAATATTACAGGCTAATTTTGCTCGGGCTGTTGCATCCCTTAGCCAGGCACAAGCCAAGAAGGTTGCGCGTTTCCTCCCTAATCCTGAGAGGAATTGGGGTCCAAAACTAAGGGCAGGCCGGCAGATCACCAGTAAGCATGTGTCTCTTTTGGGTCCTAAAGCATTGAATGCAATTAGCAACCATGGGGATGGCGAGGGTAGCAACAATGAGAACGGCGATGTCAGCAACCATGAGAATGGCGATGGTAGCAACCATGAGAATGGTAATGGTAGCAACCATGAGGATGTCGAGGAGCCTGCAGCCAAGCGTAAGAAGACCGAAGAATCTGATTCATAACTTATATATCTTGGCCAAGTGTCTGCAGTTTTTATCCCATCATAATCCATCTCTTCTGCTGCATTTTCTTGCAGAGTGAGATCCATCTTCTTTCTGATAACTGTGAAAACGTCTATCGATAATGGGGAGGATTTCATCTTGTTTATCTCAAGTATACTTTTTAATTTTTAAAGGTATTTTAGGCTATTTATATTTATTTTGTTTGTCCCTTTTTTCCTTCATTTCAATCTTAATTCCAG-TGCTGTATTAAATTTTGTTTTTCATTTTCATTTATCAGAAAACTACTCT</genome_strand>
        <mrna_strand>GGATATCATGCGTTGCTGG..........................................................................................................................................GTCAGAAATCATCCTGTGAAAGCTCAACCATCTGACCAGTCTGGAAGTGTGATCCTTGCTAAGGAGCCTGTTCTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAATTTTGCTCGGGCTGTTGCATCCCTTAGCCAGGCACAAGCCAAGAAGGTTGCTCGTTTCCTCCCTAATCCTGAGAGGAATTGGGGTCCAAAACTAAGGGCAGGTCGGCAGATCACCAGTAAGCATGTGTCTCTTTTGGGTCCTAAAGCATTGAATGCAA-T-G-AA-CA-----A---CCA---T-G-AA-ATTG-G--C-GAG-GGT-AGTAACCATGAGAATGGCGATGGTAGCAACCATGAGAATGGTGATGGTAGCAACCATGAGGATGTCAAGGAGCCTGCAGCCAAGCGTAAGAAGACCGAAGAATCTGATTCATAACTTATATATCTTGGCCAAGTGTCTGCAGTTATTATCCCATCATAATCCATCTCTTCTGCTGCATTTTCTTGCAGAGTGAGATCCATCCTCTTTCTGATAACTGTGAAAACGCCTATCGATAATGGGGAGGATTTCTTCTTGTTTATCTCAAG--TACTTTTTAATTTTTAAAGG-AAGTAAGGCTATTTATATTTATTTTGTTTGTCCCTTTTTACCTTTATTTCAATCTTAATTCCAGTTGCTGTATTAAATTTTGATTTTGATTTTCATTTAACAGAAAACTACTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E418057" ref_strand="-" ref_description="SGN-E418057 [STM-26-F20]">
      <seq>gagcctgttctgcaggctaattttgctcgggctgttgcatcccttagccaggcacaagccaagaaggttgctcgtttcctccctaatcctgagaggaattggggtccaaaactaagggcaggtcggcagatcaccagtaagcatgtgtctcttttgggtcctaaagcattgaatgcaatgaacaaccatgaaattggcgagggtagtaaccatgagaatggcgatggtagcaaccatgagaatggtgatggtagcaaccatgaggatgtcaaggagcctgcagccaagcagtgagatccatcctctttctgataactgtgaaaacgcctatcgataatggggaggatttcttcttgtttatctcaagtactttttaatttttaaaggaagtaaggctatttatatttattttgtttgtccctttttacctttatttcaatcttaattccagttgctgtattaaattttgattttgattttcatttatcagaaaactactgtgtaacatggcttgcgttgtctgtttggtcttccatgtcgacgaacattagttaatttttcttctgatgcttgacgattaaagtaatcattctgtaatattgataaaagaaatgatactgatcagagttaaattcagagaaagttgcaatctgttttgtctaaaaaaaaaaaaaaaaaaaaaaaaaactcgagactagttctctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="+" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="96025" stop="97890"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96325" g_stop="96339" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96340" i_stop="96817" i_length="478">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96818" g_stop="97086" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="282" r_length="267" r_score="0.918"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97087" i_stop="97157" i_length="71">
            <donor d_prob="0.000" d_score="0.82"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97158" g_stop="97164" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="289" r_length="7" r_score="0.857"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97165" i_stop="97218" i_length="54">
            <donor d_prob="0.281" d_score="0.00"/>
            <acceptor a_prob="0.724" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97219" g_stop="97591" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="664" r_length="375" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="665" polyA_stop="688"/>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="+" ref_id="SGN-E418057" ref_strand="-">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E418057" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="96325" e_stop="96339"/>
          <exon e_start="96818" e_stop="97086"/>
          <exon e_start="97158" e_stop="97164"/>
          <exon e_start="97219" e_stop="97591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCCTGTTCTGCAGGTGAACTTTAACCCTCTGGAAGTGATATTATTTTACCGCATCATTGTCATATGGCATAAAGGATACTTCTTGGTCCAAACTATATTGAATTTATACATATAAAGGTGTAAAAAAAAAGGACAATATTCCTTTTTTAATAAAGGACAAAATATGAATGTGAGATTCTGGTCCATGTTCTTAATAATTCATGCACCCGTCTCCTTGACTTCCAATATCTGGGAATCATTTTATGTATATGATATCACCATATGTAACTGGAGACTTGGTTCTGGTTCTGCAAATCCATCTTTTGCACTAGTCACAATAACTTTTGAAAAAACTAAATTTGCCTAGACTCCTCGTTTCACTGAGGTCTGTGATTTTGAAGCAACACACACGTCCGTCATGAAAAAACTAGCTTTTGTACACATACAAGTTGATGACATGTGTTTTCAATCAAGAATACAGTCTTTTAATTCTCATATCTGGAATATTACAGGCTAATTTTGCTCGGGCTGTTGCATCCCTTAGCCAGGCACAAGCCAAGAAGGTTGCGCGTTTCCTCCCTAATCCTGAGAGGAATTGGGGTCCAAAACTAAGGGCAGGCCGGCAGATCACCAGTAAGCATGTGTCTCTTTTGGGTCCTAAAGCATTGAATGCAATTAGCAACCATGGGGATGGCGAGGGTAGCAACAATGAGAACGGCGATGTCAGCAACCATGAGAATGGCGATGGTAGCAACCATGAGAATGGTAATGGTAGCAACCATGAGGATGTCGAGGAGCCTGCAGCCAAGCGTAAGAAGACCGAAGAATCTGATTCATAACTTATATATCTTGGCCAAGTGTCTGCAGTTTTTATCCCATCATAATCCATCTCTTCTGCTGCATTTTCTTGCAGAGTGAGATCCATCTTCTTTCTGATAACTGTGAAAACGTCTATCGATAATGGGGAGGATTTCATCTTGTTTATCTCAAGTATACTTTTTAATTTTTAAAGGTATTTTAGGCTATTTATATTTATTTTGTTTGTCCCTTTTTTCCTTCATTTCAATCTTAATTCCAG-TGCTGTATTAAATTTTGTTTTTCATTTTCATTTATCAGAAAACTACTCTGTAACATGGCTTGCGTTGTCTATTTGATCTTTTATGTCGACGAACATTAGTTAATATTTCTTCTGATGCTTGACGATTAAAGT-A--ATTCCATAATATTGATAAAA-AGATGATACTGCTCTGAGTTAAATTCAGAGAAAGTTGCTCTCTGTTTTGTCTAAC</genome_strand>
        <mrna_strand>GAGCCTGTTCTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAATTTTGCTCGGGCTGTTGCATCCCTTAGCCAGGCACAAGCCAAGAAGGTTGCTCGTTTCCTCCCTAATCCTGAGAGGAATTGGGGTCCAAAACTAAGGGCAGGTCGGCAGATCACCAGTAAGCATGTGTCTCTTTTGGGTCCTAAAGCATTGAATGCAATGAACAACCATGAAATTGGCGAGGGTAGTAACCATGAGAATGGCGATGGTAGCAACCATGAGAATGGTGATGGTAGCAACCATGAGGAT-GTCAAGG-AGCCTGCA.......................................................................GCCAAGC......................................................AGTGAGATCCATCCTCTTTCTGATAACTGTGAAAACGCCTATCGATAATGGGGAGGATTTCTTCTTGTTTATCTCAAG--TACTTTTTAATTTTTAAAGG-AAGTAAGGCTATTTATATTTATTTTGTTTGTCCCTTTTTACCTTTATTTCAATCTTAATTCCAGTTGCTGTATTAAATTTTGATTTTGATTTTCATTTATCAGAAAACTACTGTGTAACATGGCTTGCGTTGTCTGTTTGGTCTTCCATGTCGACGAACATTAGTTAATTTTTCTTCTGATGCTTGACGATTAAAGTAATCATTCTGTAATATTGATAAAAGAAATGATACTGATCAGAGTTAAATTCAGAGAAAGTTGCAATCTGTTTTGTCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E716800" ref_strand="+" ref_description="SGN-E716800 [FB18AC08]">
      <seq>actaagggcaggccggcagatcaccagtaagcatgtgtctcttttgggtcctaaagcattgaatgcaattagcaaccatggggatggcgagggtagcaacaatgagaacggcgatgtcagcaaccatgagaatggcgatggtagcaaccatgagaatggtaatggtagcaaccatgaggatgtcgaggagcctgcagccaagcgtaagaagaccgaagaatctgattcataacttatatatcttggccaagtgtctgcagtttttatcccatcataatccatctcttctgctgcattttcttgcagagtgagatccatcttctttctgataactgtgaaaacgtctatcgataatggggaggatttcatcttgtttatctcaagtatactttttaatttttaaaggtattttaggctatttatatttattttgtttgtcccttttttccttcatttcaatcttaattccagtgctgtattaaattttgtttttcattttcatttatcagaaaactactctgtaacatggcttgcgttgtctatttgatcttttatgtcgacgaacattaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="+" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="96613" stop="97781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96913" g_stop="97481" g_length="569"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="569" r_length="569" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="570" polyA_stop="584"/>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="+" ref_id="SGN-E716800" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96913" e_stop="97481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTAAGGGCAGGCCGGCAGATCACCAGTAAGCATGTGTCTCTTTTGGGTCCTAAAGCATTGAATGCAATTAGCAACCATGGGGATGGCGAGGGTAGCAACAATGAGAACGGCGATGTCAGCAACCATGAGAATGGCGATGGTAGCAACCATGAGAATGGTAATGGTAGCAACCATGAGGATGTCGAGGAGCCTGCAGCCAAGCGTAAGAAGACCGAAGAATCTGATTCATAACTTATATATCTTGGCCAAGTGTCTGCAGTTTTTATCCCATCATAATCCATCTCTTCTGCTGCATTTTCTTGCAGAGTGAGATCCATCTTCTTTCTGATAACTGTGAAAACGTCTATCGATAATGGGGAGGATTTCATCTTGTTTATCTCAAGTATACTTTTTAATTTTTAAAGGTATTTTAGGCTATTTATATTTATTTTGTTTGTCCCTTTTTTCCTTCATTTCAATCTTAATTCCAGTGCTGTATTAAATTTTGTTTTTCATTTTCATTTATCAGAAAACTACTCTGTAACATGGCTTGCGTTGTCTATTTGATCTTTTATGTCGACGAACATTA</genome_strand>
        <mrna_strand>ACTAAGGGCAGGCCGGCAGATCACCAGTAAGCATGTGTCTCTTTTGGGTCCTAAAGCATTGAATGCAATTAGCAACCATGGGGATGGCGAGGGTAGCAACAATGAGAACGGCGATGTCAGCAACCATGAGAATGGCGATGGTAGCAACCATGAGAATGGTAATGGTAGCAACCATGAGGATGTCGAGGAGCCTGCAGCCAAGCGTAAGAAGACCGAAGAATCTGATTCATAACTTATATATCTTGGCCAAGTGTCTGCAGTTTTTATCCCATCATAATCCATCTCTTCTGCTGCATTTTCTTGCAGAGTGAGATCCATCTTCTTTCTGATAACTGTGAAAACGTCTATCGATAATGGGGAGGATTTCATCTTGTTTATCTCAAGTATACTTTTTAATTTTTAAAGGTATTTTAGGCTATTTATATTTATTTTGTTTGTCCCTTTTTTCCTTCATTTCAATCTTAATTCCAGTGCTGTATTAAATTTTGTTTTTCATTTTCATTTATCAGAAAACTACTCTGTAACATGGCTTGCGTTGTCTATTTGATCTTTTATGTCGACGAACATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E607292" ref_strand="+" ref_description="SGN-E607292 [23255]">
      <seq>cggcagatcaccagtaagcatgtgtctcttttgggtcctaaagcattgaatgcaatgaacaaccatgaaattggcgagggtagcaaccatgagaatggcgatggtagcaaccatgagaatggtgatggtagcaaccatgaggatgtcgaggagcctgcagccaagcgtaagaagaccgaagaatctgattcataacttatatatcttggccaagtgtctgcagttattatcccatcataatccatctcttctgctgcattttcttgcagagtgagatccatcctctttctcaaaactgtgaaaacgcctatcgataatggggaggatttcatcttttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="+" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="96626" stop="97589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96926" g_stop="97284" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="335" r_length="335" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="340" polyA_stop="382"/>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="+" ref_id="SGN-E607292" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E607292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96926" e_stop="97284"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCAGATCACCAGTAAGCATGTGTCTCTTTTGGGTCCTAAAGCATTGAATGCAATTAGCAACCATGGGGATGGCGAGGGTAGCAACAATGAGAACGGCGATGTCAGCAACCATGAGAATGGCGATGGTAGCAACCATGAGAATGGTAATGGTAGCAACCATGAGGATGTCGAGGAGCCTGCAGCCAAGCGTAAGAAGACCGAAGAATCTGATTCATAACTTATATATCTTGGCCAAGTGTCTGCAGTTTTTATCCCATCATAATCCATCTCTTCTGCTGCATTTTCTTGCAGAGTGAGATCCATCTTCTTTCTGATAACTGTGAAAACGTCTATCGATAATGGGGAGGATTTCATCTT</genome_strand>
        <mrna_strand>CGGCAGATCACCAGTAAGCATGTGTCTCTTTTGGGTCCTAAAGCATTGAATGCAA-T-G-AA-CA-----A---CCA---T-G-AA-ATTG-G--C-GAG-GGT-AGCAACCATGAGAATGGCGATGGTAGCAACCATGAGAATGGTGATGGTAGCAACCATGAGGATGTCGAGGAGCCTGCAGCCAAGCGTAAGAAGACCGAAGAATCTGATTCATAACTTATATATCTTGGCCAAGTGTCTGCAGTTATTATCCCATCATAATCCATCTCTTCTGCTGCATTTTCTTGCAGAGTGAGATCCATCCTCTTTCTCAAAACTGTGAAAACGCCTATCGATAATGGGGAGGATTTCATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E597034" ref_strand="+" ref_description="SGN-E597034 [40529]">
      <seq>gcaatgaacaacatgaaattggcgagggtagcaacataagaatggcgatggtagcgaacatgagaatggtgatggtagcaaccatgaggatgtcgaggagcctgcagccaagcgtaagaagaccgaagaatctgattcataacttatatatcttggccaagtgtctgcagttattatcccatcataatccatctcttctgctgcattttcttgcagagtgagatccatcctctttctcaaaactgtgaaaacgcctatcgataatggggaggatttcatcttttttatctcgagtactttttaatttttaaaggtagtaaggctatttatatttattttgtttttcccattttacctttatttcaatcttaattccagttgctgtattaaattttgattttgattttcatttatcagaaaactactgtgtaacaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="+" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="96728" stop="97738"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96999" g_stop="97437" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="434" polyA_stop="446"/>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="+" ref_id="SGN-E597034" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E597034" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96999" e_stop="97437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGGGTAGCAACAATGAGAACGGCGATGTCAGCAACCATGAGAATGGCGATGGTAGCAACCATGAGAATGGTAATGGTAGCAACCATGAGGATGTCGAGGAGCCTGCAGCCAAGCGTAAGAAGACCGAAGAATCTGATTCATAACTTATATATCTTGGCCAAGTGTCTGCAGTTTTTATCCCATCATAATCCATCTCTTCTGCTGCATTTTCTTGCAGAGTGAGATCCATCTTCTTTCTGATAACTGTGAAAACGTCTATCGATAATGGGGAGGATTTCATCTTGTTTATCTCAAGTATACTTTTTAATTTTTAAAGGTATTTTAGGCTATTTATATTTATTTTGTTTGTCCCTTTTTTCCTTCATTTCAATCTTAATTCCAG-TGCTGTATTAAATTTTGTTTTTCATTTTCATTTATCAGAAAACTACTCTGTAAC</genome_strand>
        <mrna_strand>GC-AATG-AACAAC-ATGAAATTGGCGAGGGTAGCAA-CATAAGAATGGCGATGGTAGCGAACATGAGAATGGTGATGGTAGCAACCATGAGGATGTCGAGGAGCCTGCAGCCAAGCGTAAGAAGACCGAAGAATCTGATTCATAACTTATATATCTTGGCCAAGTGTCTGCAGTTATTATCCCATCATAATCCATCTCTTCTGCTGCATTTTCTTGCAGAGTGAGATCCATCCTCTTTCTCAAAACTGTGAAAACGCCTATCGATAATGGGGAGGATTTCATCTTTTTTATCTCGAG--TACTTTTTAATTTTTAAAGGTA-GTAAGGCTATTTATATTTATTTTGTTTTTCCCATTTTACCTTTATTTCAATCTTAATTCCAGTTGCTGTATTAAATTTTGATTTTGATTTTCATTTATCAGAAAACTACTGTGTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E614744" ref_strand="+" ref_description="SGN-E614744 [64535]">
      <seq>cgtaagaagaccgaagaatctgattcataacttatatatcttggccaagtgtctgcagttattatcccatcataatccatctcttctgctgcattttcttgcagagtgagatccatcctctttctgataactgtgaaaacgcctatcgataatggggaggatttcatcttgtttatctcaagtactttttaatttttaaaggtagtaaggctatttatatttattttgtttgtccctttttacctttatttcaatcttaattccagttgctgtattaaattttgattttgattttcatttatcacaaaactactgtgtaacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="+" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="96815" stop="97738"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97115" g_stop="97437" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="322" polyA_stop="331"/>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="+" ref_id="SGN-E614744" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>323</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E614744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97115" e_stop="97437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTAAGAAGACCGAAGAATCTGATTCATAACTTATATATCTTGGCCAAGTGTCTGCAGTTTTTATCCCATCATAATCCATCTCTTCTGCTGCATTTTCTTGCAGAGTGAGATCCATCTTCTTTCTGATAACTGTGAAAACGTCTATCGATAATGGGGAGGATTTCATCTTGTTTATCTCAAGTATACTTTTTAATTTTTAAAGGTATTTTAGGCTATTTATATTTATTTTGTTTGTCCCTTTTTTCCTTCATTTCAATCTTAATTCCAG-TGCTGTATTAAATTTTGTTTTTCATTTTCATTTATCAGAAAACTACTCTGTAAC</genome_strand>
        <mrna_strand>CGTAAGAAGACCGAAGAATCTGATTCATAACTTATATATCTTGGCCAAGTGTCTGCAGTTATTATCCCATCATAATCCATCTCTTCTGCTGCATTTTCTTGCAGAGTGAGATCCATCCTCTTTCTGATAACTGTGAAAACGCCTATCGATAATGGGGAGGATTTCATCTTGTTTATCTCAAG--TACTTTTTAATTTTTAAAGGTA-GTAAGGCTATTTATATTTATTTTGTTTGTCCCTTTTTACCTTTATTTCAATCTTAATTCCAGTTGCTGTATTAAATTTTGATTTTGATTTTCATTTATCACAAAACTACTGTGTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E328126" ref_strand="+" ref_description="SGN-E328126 [cTOC-22-H18]">
      <seq>caaaatttaaaaagaaaaaaaaaaaaaatctctcgaaatggctactgttcctttgaaagatgagctagacattgtgataccaacgattagaaacttagattttcttgagatgtggaggccatttttcgaacaatatcatttaattattgtgcaagatggtgatccttcaaagactattaaagttcctgatggctttgattatgagctctacaatcgtaatgatattaacaaaattttgggtccgagggcttcttgtatttcgttcaaagactcggcttgtcgttgctttggttacatggtgtccaagaagaagtatatttacactattgatgatgattgcttcgttgcaaaggacccaagtgggaaagatattaatgcattggaacaacacataaagaatcttctttgtccatcaactccctattttttcaacacactttatgatccatttagagatggtgctgattttgtgcgtggatacccttttagtctacgtgagggtgtttcaactgcagtctctcatggattatggctcaacattcctgattatgatgcacctactcaacttgtcaagcctcttgagaggaatactaggtacgttgatacggtgttgacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="99731" stop="98346"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99431" g_stop="99091" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="343" r_length="343" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99090" i_stop="98997" i_length="94">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98996" g_stop="98746" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="594" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98745" i_stop="98668" i_length="78">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98667" g_stop="98646" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="616" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E328126" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328126" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99431" e_stop="99091"/>
          <exon e_start="98996" e_stop="98746"/>
          <exon e_start="98667" e_stop="98646"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATTTAAAAAGAAA--AAAAAAAAATCTCTCGAAATGGCTACTGTTCCTTTGAAAGATGAGCTAGACATTGTGATACCAACGATTAGAAACTTAGATTTTCTTGAGATGTGGAGGCCATTTTTCGAACAATATCATTTAATTATTGTGCAAGATGGTGATCCTTCAAAGACTATTAAAGTTCCTGATGGCTTTGATTATGAGCTCTACAATCGTAATGATATTAACAAAATTTTGGGTCCGAGGGCTTCTTGTATTTCGTTCAAAGACTCGGCTTGTCGTTGCTTTGGTTACATGGTGTCCAAGAAGAAGTATATTTACACTATTGATGATGATTGCTTCGTAAGACATCGATCTCCTTATATCATATGGTGTTTGTAGGCTTTTTTTTTTATAGTTTGACATTGTTTGGTTTTTGTGAAAATTGAATTGATAGGTTGCAAAGGACCCAAGTGGGAAAGATATTAATGCATTGGAACAACACATAAAGAATCTTCTTTGTCCATCAACTCCCTATTTTTTCAACACACTTTATGATCCATTTAGAGATGGTGCTGATTTTGTGCGTGGATACCCTTTTAGTCTACGTGAGGGTGTTTCAACTGCAGTCTCTCATGGATTATGGCTCAACATTCCTGATTATGATGCACCTACTCAACTTGTCAAGCCTCTTGAGAGGAATACTAGGTCTCCTCTTTATTAATTTTACTTATATCAGTTACTTTTAGAAATAAAAATTATATATAAAGTTTAAATTCTGAATAGGTACGTTGATACGGTGTTGACG</genome_strand>
        <mrna_strand>CAAAATTTAAAAAGAAAAAAAAAAAAAATCTCTCGAAATGGCTACTGTTCCTTTGAAAGATGAGCTAGACATTGTGATACCAACGATTAGAAACTTAGATTTTCTTGAGATGTGGAGGCCATTTTTCGAACAATATCATTTAATTATTGTGCAAGATGGTGATCCTTCAAAGACTATTAAAGTTCCTGATGGCTTTGATTATGAGCTCTACAATCGTAATGATATTAACAAAATTTTGGGTCCGAGGGCTTCTTGTATTTCGTTCAAAGACTCGGCTTGTCGTTGCTTTGGTTACATGGTGTCCAAGAAGAAGTATATTTACACTATTGATGATGATTGCTTC..............................................................................................GTTGCAAAGGACCCAAGTGGGAAAGATATTAATGCATTGGAACAACACATAAAGAATCTTCTTTGTCCATCAACTCCCTATTTTTTCAACACACTTTATGATCCATTTAGAGATGGTGCTGATTTTGTGCGTGGATACCCTTTTAGTCTACGTGAGGGTGTTTCAACTGCAGTCTCTCATGGATTATGGCTCAACATTCCTGATTATGATGCACCTACTCAACTTGTCAAGCCTCTTGAGAGGAATACTAG..............................................................................GTACGTTGATACGGTGTTGACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E222097" ref_strand="+" ref_description="SGN-E222097 [cLEL-36-A6](-)">
      <seq>gaaatttccacatttcttcattacttcgtaacaaaatacagatgggaagaaataggtggagataaactgatgaaattcccaagagttgaagcaccaaatggtctacggattagagtttcagctcactaactatcaattcatgaatgtacagagaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="104604" stop="103745"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104304" g_stop="104264" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104263" i_stop="104166" i_length="98">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104165" g_stop="104035" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="172" r_length="131" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-E222097" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>172</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222097" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104304" e_stop="104264"/>
          <exon e_start="104165" e_stop="104035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTTCCACATTTCTTCATTACTTCGTAACAAAATACAGGTATTTAATATATAAACATATATAATAAAAAAATTATTAATTTTATCTCGTATTTGATGATCTGTTACTAAATTGAAGTTGTATTATGGTTTATGCAGATGGGAAGAAATAGGTGGAGATAAACTGATGAAATTCCCAAGAGTTGAAGCACCAAATGGTCTACGGATTAGAGTTTCAGCTCACTAACTATCAATTCATGAATGTACAGAGAAAAAAAAATTCAAAAAAA</genome_strand>
        <mrna_strand>GAAATTTCCACATTTCTTCATTACTTCGTAACAAAATACAG..................................................................................................ATGGGAAGAAATAGGTGGAGATAAACTGATGAAATTCCCAAGAGTTGAAGCACCAAATGGTCTACGGATTAGAGTTTCAGCTCACTAACTATCAATTCATGAATGTACAGAGAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>221</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="5013" PGL_stop="557"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5013" e_stop="4151"/>
            <exon e_start="3424" e_stop="2918"/>
            <exon e_start="1708" e_stop="557"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.941" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="5013" e_stop="4151" e_length="863"/>
          </exon>
          <intron i_serial="1" don_prob="0.941" acc_prob="0.994">
            <gDNA_intron_boundary i_start="4150" i_stop="3425" i_length="726"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="3424" e_stop="2918" e_length="507"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="2917" i_stop="1709" i_length="1209"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="1708" e_stop="557" e_length="1152"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5013" stop="4497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4854" stop="4151"/>
              <exon start="3424" stop="3347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4524" stop="4151"/>
              <exon start="3424" stop="3052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483289" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4524" stop="4151"/>
              <exon start="3424" stop="3356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426644" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3376" stop="2918"/>
              <exon start="1708" stop="1367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3116" stop="2918"/>
              <exon start="1708" stop="1354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3116" stop="2918"/>
              <exon start="1708" stop="1495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2970" stop="2918"/>
              <exon start="1708" stop="1207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2967" stop="2918"/>
              <exon start="1708" stop="1187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1663" stop="905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1645" stop="1148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1616" stop="991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314985" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1480" stop="993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1461" stop="1217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1294" stop="571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1293" stop="706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713285" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1215" stop="833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E434404" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1154" stop="557"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1143" stop="717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1114" stop="576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1114" stop="576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735334" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1114" stop="576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1114" stop="576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1114" stop="576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739563" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1114" stop="576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1114" stop="576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740040" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1114" stop="576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1114" stop="576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740126" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGAACCAGCTGAGGGTATTCTTTTGATTGTGGAGAGCTTAACACTAGAAGCAAATGAGAGTGATAACATCAGCATTACTTCTGATGTAGATGTAGTCTCCAGTGATGAAGCAGGTGCTGGTGAACAGGCAAAGAAAATTGTACTACTTTTCCTTGAAAGATTGTCCCATCCATCTGGACTTAGAAAGTCAAATAAGCAGCAGAGGAACACTGAGATGGTCGCAAGAATATTGCCTTACTTGACGTACGGGGAACCTGCAGCAATGGAAGCTCTTGTACAGCATTTTGAACCTTGTTTACAGAATTGGCGCGAATTTGATAGGCTGCAAAAACTTTACGAAGACAATATGAATGATGAAACAATTGCGCAGCAAGCTTCAAAGCAAAAATACACCCTAGAGAATTTTGTTAGGGTTTCAGAATCCCTCAAGACAAGTTCTTGTGGAGAGAGGTTGAAAGATATTATACTGGAAAAAGGGATTACTGGGGCTGCAATCAGCCATCTAAAAGAAACCTTTGCTTTCACTGGACAGGTTGGTTTCAAATCAACTGTGGAGTGGACCTCGGGTTTAAAGCTTCCATCTATTCCTCTTATTTTATCCATGCTGAGGGGTTTGTCGATGGGCCATTTAGCAACTCAAAAGTGCATAGATGAAGGAGGAATCTTGCCATTGCTTCATGCTTTAGAGGGTGTCGCTGGTGAGAATGAGATTGGAGCCAGGGCTGAAAACTTGTTGGACACACTGTCTGACAAAGAGGGAAAAGGTGATGGGTTCTTAGCTCAGAAAGTTCACCAACTACGTCATGCGACAAAGGATGAGATGAGGAGACGAGCATTGAGGAAGAGAGCAGAATTACTGCAG : GGACTTGGTATGCACCAAGAACTGTCCTCAGATGGTGGTGAACGTATTGTTGTTGCTCGACCTATCTTGGAAGGTTTGGAAGATGTTGAGGATGAGGAAGAGGAAGGCTTGGCTTGCATGGTTTGTCGTGAAGGCTACCGCTTGCGCCCTACAGACTTGCTTGGTGTTTACACTTATAGTAAACGGGTTAATCTTGGTGTTGGAAGCCCTGGAAATGCTCGTGGGGACTGTGTTTACACAACGGTCAGCCATTTCAACATCATACATTTTCAGTGCCATCAGGAGGCTAAACGAGCAGATGCGGCCTTAAGTAAACCTAAAAAAGAATGGGATGGAGCAGCCCTTAGAAATAACGAGACACTATGCAATAATCTTTTCCCTCTGAGAGGTCCATCAGTACCAATAGGGCAATATATACGCTACGTTGACCAATACTGGGATTACCTGAATGCTCTTGGGCGTGCTGATGGAAGTCGGCTCCGGTTGTTAACTTACGACATTGTTTTG : ATGCTTGCTCGATTTGCCACTGGTGCTTCATTTAGTGCAGATTGCAGGGGTGGTGGAAAAGACAGTAATGCTCGATTTTTGCCTTTCATGATGCAAATGGCGCGTCACCTTCTTGATCATGATTCTTCTCAGCAGCATATCATGATTAAGTCTATCTCAACCTATTTAAGTTCTCCTGCATCAGAATCCAGAGCCTCCACTACCTCTGGAACTCAGACTTCCGCTGGTACAGAGGAGACTGTCCAGTTCATGATGGTTACCTCACTTCTTTCAGAATCCTATGAGTCGTGGCTGCAGAATCGCGCTTCCTTTTTACAACGAGGTATATACCATGCGTATATCCAGCGGACTCATGGTAGGCCTGTGCCTCGCTCGTCCCCCAATATGTCTGGGGCTTTGAAAACAGAGTCGGGAAGTACAAGTACATCTGCTTCTGAGGCTGGGGGATCAATTGAGTTATTCTCAACTATTCAACCAATGCTTGTCTACACTGGTTTGATAGAACAACTGCAGCGCTTCTTTAAGGTAAAAAAATCATCTAGTGCGACCACCTTGCGAACCCAAGGGACTTCCAAGAATGTGGAAGATGATGACGAGGGCAGAAAGCTAGAAGGCTGGGAGTTAGTCATGAAAGAGAGACTATTAAATGTTAAGGAAATGGCAGATTTCTCGTCTGAACTGTTATCGTGGCTTGATGACATGACTTCAGCAACGGATTTCCAGGAGGCATTTGATGTTCTTGGTGTTTTGAGTGATGTGCTTTCTGGGTTCAGTCGATGTGAAGATTATGTACATGCTGCAATCAGTGGTGGGAAAAACTGATCCATCAAAGGTGTTTCTGTGACATGCTTTCTGGGTTCAGTCAATGTGAGGATTATGTACATGGTGGCGGGCCAAACAGAGAATTTGTCGAAGGCTCACTTCGGTTAAGTATTGTATTCCCTAGTCTTCTTACTTCGATATATGTGGAATATTCTTTTGTAGGTGCGTCTTTTATTCCCTTGTTACACGAATTGCGAGTGAGCCTTCTGAGTTTTGTTTCTCAATGTAGTCGAAGTGTACATCTTTCTGTATCGACCATAACTTAAAACCAGTAAAATAGCCCCCACTTTGGGCAGCAAAAAATTTAAATAGTTTTGTCTACTTGAGTAG</gDNA_template>
            <first_frame> W  N  Q  L  R  V  F  F  *  L  W  R  A  *  H  *  K  Q  M  R  V  I  T  S  A  L  L  L  M  *  M  *  S  P  V  M  K  Q  V  L  V  N  R  Q  R  K  L  Y  Y  F  S  L  K  D  C  P  I  H  L  D  L  E  S  Q  I  S  S  R  G  T  L  R  W  S  Q  E  Y  C  L  T  *  R  T  G  N  L  Q  Q  W  K  L  L  Y  S  I  L  N  L  V  Y  R  I  G  A  N  L  I  G  C  K  N  F  T  K  T  I  *  M  M  K  Q  L  R  S  K  L  Q  S  K  N  T  P  *  R  I  L  L  G  F  Q  N  P  S  R  Q  V  L  V  E  R  G  *  K  I  L  Y  W  K  K  G  L  L  G  L  Q  S  A  I  *  K  K  P  L  L  S  L  D  R  L  V  S  N  Q  L  W  S  G  P  R  V  *  S  F  H  L  F  L  L  F  Y  P  C  *  G  V  C  R  W  A  I  *  Q  L  K  S  A  *  M  K  E  E  S  C  H  C  F  M  L  *  R  V  S  L  V  R  M  R  L  E  P  G  L  K  T  C  W  T  H  C  L  T  K  R  E  K  V  M  G  S  *  L  R  K  F  T  N  Y  V  M  R  Q  R  M  R  *  G  D  E  H  *  G  R  E  Q  N  Y  C  R :   D  L  V  C  T  K  N  C  P  Q  M  V  V  N  V  L  L  L  L  D  L  S  W  K  V  W  K  M  L  R  M  R  K  R  K  A  W  L  A  W  F  V  V  K  A  T  A  C  A  L  Q  T  C  L  V  F  T  L  I  V  N  G  L  I  L  V  L  E  A  L  E  M  L  V  G  T  V  F  T  Q  R  S  A  I  S  T  S  Y  I  F  S  A  I  R  R  L  N  E  Q  M  R  P  *  V  N  L  K  K  N  G  M  E  Q  P  L  E  I  T  R  H  Y  A  I  I  F  S  L  *  E  V  H  Q  Y  Q  *  G  N  I  Y  A  T  L  T  N  T  G  I  T  *  M  L  L  G  V  L  M  E  V  G  S  G  C  *  L  T  T  L  F  * :   C  L  L  D  L  P  L  V  L  H  L  V  Q  I  A  G  V  V  E  K  T  V  M  L  D  F  C  L  S  *  C  K  W  R  V  T  F  L  I  M  I  L  L  S  S  I  S  *  L  S  L  S  Q  P  I  *  V  L  L  H  Q  N  P  E  P  P  L  P  L  E  L  R  L  P  L  V  Q  R  R  L  S  S  S  *  W  L  P  H  F  F  Q  N  P  M  S  R  G  C  R  I  A  L  P  F  Y  N  E  V  Y  T  M  R  I  S  S  G  L  M  V  G  L  C  L  A  R  P  P  I  C  L  G  L  *  K  Q  S  R  E  V  Q  V  H  L  L  L  R  L  G  D  Q  L  S  Y  S  Q  L  F  N  Q  C  L  S  T  L  V  *  *  N  N  C  S  A  S  L  R  *  K  N  H  L  V  R  P  P  C  E  P  K  G  L  P  R  M  W  K  M  M  T  R  A  E  S  *  K  A  G  S  *  S  *  K  R  D  Y  *  M  L  R  K  W  Q  I  S  R  L  N  C  Y  R  G  L  M  T  *  L  Q  Q  R  I  S  R  R  H  L  M  F  L  V  F  *  V  M  C  F  L  G  S  V  D  V  K  I  M  Y  M  L  Q  S  V  V  G  K  T  D  P  S  K  V  F  L  *  H  A  F  W  V  Q  S  M  *  G  L  C  T  W  W  R  A  K  Q  R  I  C  R  R  L  T  S  V  K  Y  C  I  P  *  S  S  Y  F  D  I  C  G  I  F  F  C  R  C  V  F  Y  S  L  V  T  R  I  A  S  E  P  S  E  F  C  F  S  M  *  S  K  C  T  S  F  C  I  D  H  N  L  K  P  V  K  *  P  P  L  W  A  A  K  N  L  N  S  F  V  Y  L  S   </first_frame>
            <second_frame>  G  T  S  *  G  Y  S  F  D  C  G  E  L  N  T  R  S  K  *  E  *  *  H  Q  H  Y  F  *  C  R  C  S  L  Q  *  *  S  R  C  W  *  T  G  K  E  N  C  T  T  F  P  *  K  I  V  P  S  I  W  T  *  K  V  K  *  A  A  E  E  H  *  D  G  R  K  N  I  A  L  L  D  V  R  G  T  C  S  N  G  S  S  C  T  A  F  *  T  L  F  T  E  L  A  R  I  *  *  A  A  K  T  L  R  R  Q  Y  E  *  *  N  N  C  A  A  S  F  K  A  K  I  H  P  R  E  F  C  *  G  F  R  I  P  Q  D  K  F  L  W  R  E  V  E  R  Y  Y  T  G  K  R  D  Y  W  G  C  N  Q  P  S  K  R  N  L  C  F  H  W  T  G  W  F  Q  I  N  C  G  V  D  L  G  F  K  A  S  I  Y  S  S  Y  F  I  H  A  E  G  F  V  D  G  P  F  S  N  S  K  V  H  R  *  R  R  N  L  A  I  A  S  C  F  R  G  C  R  W  *  E  *  D  W  S  Q  G  *  K  L  V  G  H  T  V  *  Q  R  G  K  R  *  W  V  L  S  S  E  S  S  P  T  T  S  C  D  K  G  *  D  E  E  T  S  I  E  E  E  S  R  I  T  A   : G  T  W  Y  A  P  R  T  V  L  R  W  W  *  T  Y  C  C  C  S  T  Y  L  G  R  F  G  R  C  *  G  *  G  R  G  R  L  G  L  H  G  L  S  *  R  L  P  L  A  P  Y  R  L  A  W  C  L  H  L  *  *  T  G  *  S  W  C  W  K  P  W  K  C  S  W  G  L  C  L  H  N  G  Q  P  F  Q  H  H  T  F  S  V  P  S  G  G  *  T  S  R  C  G  L  K  *  T  *  K  R  M  G  W  S  S  P  *  K  *  R  D  T  M  Q  *  S  F  P  S  E  R  S  I  S  T  N  R  A  I  Y  T  L  R  *  P  I  L  G  L  P  E  C  S  W  A  C  *  W  K  S  A  P  V  V  N  L  R  H  C  F   : D  A  C  S  I  C  H  W  C  F  I  *  C  R  L  Q  G  W  W  K  R  Q  *  C  S  I  F  A  F  H  D  A  N  G  A  S  P  S  *  S  *  F  F  S  A  A  Y  H  D  *  V  Y  L  N  L  F  K  F  S  C  I  R  I  Q  S  L  H  Y  L  W  N  S  D  F  R  W  Y  R  G  D  C  P  V  H  D  G  Y  L  T  S  F  R  I  L  *  V  V  A  A  E  S  R  F  L  F  T  T  R  Y  I  P  C  V  Y  P  A  D  S  W  *  A  C  A  S  L  V  P  Q  Y  V  W  G  F  E  N  R  V  G  K  Y  K  Y  I  C  F  *  G  W  G  I  N  *  V  I  L  N  Y  S  T  N  A  C  L  H  W  F  D  R  T  T  A  A  L  L  *  G  K  K  I  I  *  C  D  H  L  A  N  P  R  D  F  Q  E  C  G  R  *  *  R  G  Q  K  A  R  R  L  G  V  S  H  E  R  E  T  I  K  C  *  G  N  G  R  F  L  V  *  T  V  I  V  A  *  *  H  D  F  S  N  G  F  P  G  G  I  *  C  S  W  C  F  E  *  C  A  F  W  V  Q  S  M  *  R  L  C  T  C  C  N  Q  W  W  E  K  L  I  H  Q  R  C  F  C  D  M  L  S  G  F  S  Q  C  E  D  Y  V  H  G  G  G  P  N  R  E  F  V  E  G  S  L  R  L  S  I  V  F  P  S  L  L  T  S  I  Y  V  E  Y  S  F  V  G  A  S  F  I  P  L  L  H  E  L  R  V  S  L  L  S  F  V  S  Q  C  S  R  S  V  H  L  S  V  S  T  I  T  *  N  Q  *  N  S  P  H  F  G  Q  Q  K  I  *  I  V  L  S  T  *  V  </second_frame>
            <third_frame>   E  P  A  E  G  I  L  L  I  V  E  S  L  T  L  E  A  N  E  S  D  N  I  S  I  T  S  D  V  D  V  V  S  S  D  E  A  G  A  G  E  Q  A  K  K  I  V  L  L  F  L  E  R  L  S  H  P  S  G  L  R  K  S  N  K  Q  Q  R  N  T  E  M  V  A  R  I  L  P  Y  L  T  Y  G  E  P  A  A  M  E  A  L  V  Q  H  F  E  P  C  L  Q  N  W  R  E  F  D  R  L  Q  K  L  Y  E  D  N  M  N  D  E  T  I  A  Q  Q  A  S  K  Q  K  Y  T  L  E  N  F  V  R  V  S  E  S  L  K  T  S  S  C  G  E  R  L  K  D  I  I  L  E  K  G  I  T  G  A  A  I  S  H  L  K  E  T  F  A  F  T  G  Q  V  G  F  K  S  T  V  E  W  T  S  G  L  K  L  P  S  I  P  L  I  L  S  M  L  R  G  L  S  M  G  H  L  A  T  Q  K  C  I  D  E  G  G  I  L  P  L  L  H  A  L  E  G  V  A  G  E  N  E  I  G  A  R  A  E  N  L  L  D  T  L  S  D  K  E  G  K  G  D  G  F  L  A  Q  K  V  H  Q  L  R  H  A  T  K  D  E  M  R  R  R  A  L  R  K  R  A  E  L  L  Q  :  G  L  G  M  H  Q  E  L  S  S  D  G  G  E  R  I  V  V  A  R  P  I  L  E  G  L  E  D  V  E  D  E  E  E  E  G  L  A  C  M  V  C  R  E  G  Y  R  L  R  P  T  D  L  L  G  V  Y  T  Y  S  K  R  V  N  L  G  V  G  S  P  G  N  A  R  G  D  C  V  Y  T  T  V  S  H  F  N  I  I  H  F  Q  C  H  Q  E  A  K  R  A  D  A  A  L  S  K  P  K  K  E  W  D  G  A  A  L  R  N  N  E  T  L  C  N  N  L  F  P  L  R  G  P  S  V  P  I  G  Q  Y  I  R  Y  V  D  Q  Y  W  D  Y  L  N  A  L  G  R  A  D  G  S  R  L  R  L  L  T  Y  D  I  V  L  :  M  L  A  R  F  A  T  G  A  S  F  S  A  D  C  R  G  G  G  K  D  S  N  A  R  F  L  P  F  M  M  Q  M  A  R  H  L  L  D  H  D  S  S  Q  Q  H  I  M  I  K  S  I  S  T  Y  L  S  S  P  A  S  E  S  R  A  S  T  T  S  G  T  Q  T  S  A  G  T  E  E  T  V  Q  F  M  M  V  T  S  L  L  S  E  S  Y  E  S  W  L  Q  N  R  A  S  F  L  Q  R  G  I  Y  H  A  Y  I  Q  R  T  H  G  R  P  V  P  R  S  S  P  N  M  S  G  A  L  K  T  E  S  G  S  T  S  T  S  A  S  E  A  G  G  S  I  E  L  F  S  T  I  Q  P  M  L  V  Y  T  G  L  I  E  Q  L  Q  R  F  F  K  V  K  K  S  S  S  A  T  T  L  R  T  Q  G  T  S  K  N  V  E  D  D  D  E  G  R  K  L  E  G  W  E  L  V  M  K  E  R  L  L  N  V  K  E  M  A  D  F  S  S  E  L  L  S  W  L  D  D  M  T  S  A  T  D  F  Q  E  A  F  D  V  L  G  V  L  S  D  V  L  S  G  F  S  R  C  E  D  Y  V  H  A  A  I  S  G  G  K  N  *  S  I  K  G  V  S  V  T  C  F  L  G  S  V  N  V  R  I  M  Y  M  V  A  G  Q  T  E  N  L  S  K  A  H  F  G  *  V  L  Y  S  L  V  F  L  L  R  Y  M  W  N  I  L  L  *  V  R  L  L  F  P  C  Y  T  N  C  E  *  A  F  *  V  L  F  L  N  V  V  E  V  Y  I  F  L  Y  R  P  *  L  K  T  S  K  I  A  P  T  L  G  S  K  K  F  K  *  F  C  L  L  E  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0092M23.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5011" stop="4151"/>
                    <exon start="3424" stop="2918"/>
                    <exon start="1708" stop="887"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>2187</number_coding_nucleotides>
                  <number_encoded_amino_acids>729</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EPAEGILLIVESLTLEANESDNISITSDVDVVSSDEAGAGEQAKKIVLLFLERLSHPSGLRKSNKQQRNTEMVARILPYLTYGEPAAMEALVQHFEPCLQNWREFDRLQKLYEDNMNDETIAQQASKQKYTLENFVRVSESLKTSSCGERLKDIILEKGITGAAISHLKETFAFTGQVGFKSTVEWTSGLKLPSIPLILSMLRGLSMGHLATQKCIDEGGILPLLHALEGVAGENEIGARAENLLDTLSDKEGKGDGFLAQKVHQLRHATKDEMRRRALRKRAELLQGLGMHQELSSDGGERIVVARPILEGLEDVEDEEEEGLACMVCREGYRLRPTDLLGVYTYSKRVNLGVGSPGNARGDCVYTTVSHFNIIHFQCHQEAKRADAALSKPKKEWDGAALRNNETLCNNLFPLRGPSVPIGQYIRYVDQYWDYLNALGRADGSRLRLLTYDIVLMLARFATGASFSADCRGGGKDSNARFLPFMMQMARHLLDHDSSQQHIMIKSISTYLSSPASESRASTTSGTQTSAGTEETVQFMMVTSLLSESYESWLQNRASFLQRGIYHAYIQRTHGRPVPRSSPNMSGALKTESGSTSTSASEAGGSIELFSTIQPMLVYTGLIEQLQRFFKVKKSSSATTLRTQGTSKNVEDDDEGRKLEGWELVMKERLLNVKEMADFSSELLSWLDDMTSATDFQEAFDVLGVLSDVLSGFSRCEDYVHAAISGGKN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="31846" PGL_stop="30289"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31846" e_stop="31724"/>
            <exon e_start="31628" e_stop="30289"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.890" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="31846" e_stop="31724" e_length="123"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.890">
            <gDNA_intron_boundary i_start="31723" i_stop="31629" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="31628" e_stop="30289" e_length="1340"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31846" stop="31724"/>
              <exon start="31628" stop="31086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371214" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31846" stop="31724"/>
              <exon start="31628" stop="31170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271922" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31836" stop="31724"/>
              <exon start="31628" stop="31243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202523" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31620" stop="31072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31620" stop="31102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31236" stop="30829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31103" stop="30504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379275" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31102" stop="30458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31102" stop="30458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379079" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31102" stop="30459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201788" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31097" stop="30452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352317" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30962" stop="30458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30772" stop="30289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351478" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCGACTTCACAGGCAGAGAATACTAGGCATAGGCATCACTCAACCGCAGTTATTGAGGGAACTGTTTTCTGTGATACCTGCTTCCAGCAACACTTCTCAGGGGCTAGTCACTTCATTTCAG : GTGCTACTGTCGCTGTAGAATGTGCAGACTCGGTCAGAAGATCAAGTTTTTACAAGGAGGTGAAAACCAATGAGCATGGGAAATTCAGTGTAGACCTTCCTATTTCTGTAAGTAAACATGTCAAGAAAATCAAGGGATGTTCTGTGAAGCTGATCAAGAGCAGCGAGCCATATTGTGCTGTGGCGTCGACAGCAACTTCATCTTCCCTTCATCTCAAGTCAAGAACACAAGGGACTCACATCTTCTCTGCTGGTTTCTTCACTTTCAAGCCTCTCAACCAGCCAGATCTCTGTAGCCAAAAGCCAAGCATCCAAAAGTCAAAAAAGAAATTAACAGATCCTCAAAAGTCTGCTATTTCAAATCCCAATGATCCTACATTTTACCCTCCAATTCAAGATCCACCAGCGCCAGGTACTTTACTTCCACCTCTTCCTAGGCTACCTCCTTTACCATTGCTCCCTCCTTTGCCAGATCTTCCAGGACTTCCAATATCACCAGTGCCTAAAGACTCTAGCAAATACTACTCTCAATCAGAAACTGCAGCTAAGCCAAATTTTTTCAATCCAATAGGAGGACTTCCCCTGCCTCCAAATCCACTTCTTCCACCACCTTCAATCCTTCCTCCAAACCCATTTCTACCTCCACCTTCTATTATTCCTCCTATCATCCCATCTCCTCCTCCTTCCATATTTCCTCCCTTATTCCCTTCTCCTCCACCTTCAATATTTCCTCCATTAATTCCTTCACCTCCACGTTCTCCACCTTCATTATTCCCTCCGCTTATCCCACCGTTCATACCTGGTTTAACTCCATCTCCCCCACCACCGCCCCCTTCACTCTTCCCACCAATCATACCTGGTTTTCCTGGTGTTCCTCCAGCTTCCACTTCTTCATCTCTACAAAAGAAGAACCCCTCTCCTTAGTCAAGAATACAGTTACACAAACACCTGTCATATAGCTTGGCAACTTCTTTTTCCTTATGCCTCTGTACTTCTCCAATAAACCTACTCCACTTTGTTTTACTACCTTCTTTGTTTCTTGATTTCTGTTTACCTTTATAATTTTTATCCTCGGTTTCATCTTGTTTCGTTTTGTTTTGTTAGACATATTAGATAGGAAATCAAGTGATTGTATGATATGTAAGCTACTTCAATAAAAGCTAAACTTATCAGCGACTGTGTTTATAGAAGATAATGGCTATTGCTAGTAGATATTTAACCTTTAGTGTTAAAGAAAAATTGTAGACCTGCTGGTATTACATGTGTCAGGAACCAAATACCTATATATAGTTTCTGAACTTCTGCTCAACAGAAGAGATGAATTGAACGAATTCTTGGATG</gDNA_template>
            <first_frame> F  R  L  H  R  Q  R  I  L  G  I  G  I  T  Q  P  Q  L  L  R  E  L  F  S  V  I  P  A  S  S  N  T  S  Q  G  L  V  T  S  F  Q  :  V  L  L  S  L  *  N  V  Q  T  R  S  E  D  Q  V  F  T  R  R  *  K  P  M  S  M  G  N  S  V  *  T  F  L  F  L  *  V  N  M  S  R  K  S  R  D  V  L  *  S  *  S  R  A  A  S  H  I  V  L  W  R  R  Q  Q  L  H  L  P  F  I  S  S  Q  E  H  K  G  L  T  S  S  L  L  V  S  S  L  S  S  L  S  T  S  Q  I  S  V  A  K  S  Q  A  S  K  S  Q  K  R  N  *  Q  I  L  K  S  L  L  F  Q  I  P  M  I  L  H  F  T  L  Q  F  K  I  H  Q  R  Q  V  L  Y  F  H  L  F  L  G  Y  L  L  Y  H  C  S  L  L  C  Q  I  F  Q  D  F  Q  Y  H  Q  C  L  K  T  L  A  N  T  T  L  N  Q  K  L  Q  L  S  Q  I  F  S  I  Q  *  E  D  F  P  C  L  Q  I  H  F  F  H  H  L  Q  S  F  L  Q  T  H  F  Y  L  H  L  L  L  F  L  L  S  S  H  L  L  L  L  P  Y  F  L  P  Y  S  L  L  L  H  L  Q  Y  F  L  H  *  F  L  H  L  H  V  L  H  L  H  Y  S  L  R  L  S  H  R  S  Y  L  V  *  L  H  L  P  H  H  R  P  L  H  S  S  H  Q  S  Y  L  V  F  L  V  F  L  Q  L  P  L  L  H  L  Y  K  R  R  T  P  L  L  S  Q  E  Y  S  Y  T  N  T  C  H  I  A  W  Q  L  L  F  P  Y  A  S  V  L  L  Q  *  T  Y  S  T  L  F  Y  Y  L  L  C  F  L  I  S  V  Y  L  Y  N  F  Y  P  R  F  H  L  V  S  F  C  F  V  R  H  I  R  *  E  I  K  *  L  Y  D  M  *  A  T  S  I  K  A  K  L  I  S  D  C  V  Y  R  R  *  W  L  L  L  V  D  I  *  P  L  V  L  K  K  N  C  R  P  A  G  I  T  C  V  R  N  Q  I  P  I  Y  S  F  *  T  S  A  Q  Q  K  R  *  I  E  R  I  L  G   </first_frame>
            <second_frame>  F  D  F  T  G  R  E  Y  *  A  *  A  S  L  N  R  S  Y  *  G  N  C  F  L  *  Y  L  L  P  A  T  L  L  R  G  *  S  L  H  F  R :   C  Y  C  R  C  R  M  C  R  L  G  Q  K  I  K  F  L  Q  G  G  E  N  Q  *  A  W  E  I  Q  C  R  P  S  Y  F  C  K  *  T  C  Q  E  N  Q  G  M  F  C  E  A  D  Q  E  Q  R  A  I  L  C  C  G  V  D  S  N  F  I  F  P  S  S  Q  V  K  N  T  R  D  S  H  L  L  C  W  F  L  H  F  Q  A  S  Q  P  A  R  S  L  *  P  K  A  K  H  P  K  V  K  K  E  I  N  R  S  S  K  V  C  Y  F  K  S  Q  *  S  Y  I  L  P  S  N  S  R  S  T  S  A  R  Y  F  T  S  T  S  S  *  A  T  S  F  T  I  A  P  S  F  A  R  S  S  R  T  S  N  I  T  S  A  *  R  L  *  Q  I  L  L  S  I  R  N  C  S  *  A  K  F  F  Q  S  N  R  R  T  S  P  A  S  K  S  T  S  S  T  T  F  N  P  S  S  K  P  I  S  T  S  T  F  Y  Y  S  S  Y  H  P  I  S  S  S  F  H  I  S  S  L  I  P  F  S  S  T  F  N  I  S  S  I  N  S  F  T  S  T  F  S  T  F  I  I  P  S  A  Y  P  T  V  H  T  W  F  N  S  I  S  P  T  T  A  P  F  T  L  P  T  N  H  T  W  F  S  W  C  S  S  S  F  H  F  F  I  S  T  K  E  E  P  L  S  L  V  K  N  T  V  T  Q  T  P  V  I  *  L  G  N  F  F  F  L  M  P  L  Y  F  S  N  K  P  T  P  L  C  F  T  T  F  F  V  S  *  F  L  F  T  F  I  I  F  I  L  G  F  I  L  F  R  F  V  L  L  D  I  L  D  R  K  S  S  D  C  M  I  C  K  L  L  Q  *  K  L  N  L  S  A  T  V  F  I  E  D  N  G  Y  C  *  *  I  F  N  L  *  C  *  R  K  I  V  D  L  L  V  L  H  V  S  G  T  K  Y  L  Y  I  V  S  E  L  L  L  N  R  R  D  E  L  N  E  F  L  D  </second_frame>
            <third_frame>   S  T  S  Q  A  E  N  T  R  H  R  H  H  S  T  A  V  I  E  G  T  V  F  C  D  T  C  F  Q  Q  H  F  S  G  A  S  H  F  I  S   : G  A  T  V  A  V  E  C  A  D  S  V  R  R  S  S  F  Y  K  E  V  K  T  N  E  H  G  K  F  S  V  D  L  P  I  S  V  S  K  H  V  K  K  I  K  G  C  S  V  K  L  I  K  S  S  E  P  Y  C  A  V  A  S  T  A  T  S  S  S  L  H  L  K  S  R  T  Q  G  T  H  I  F  S  A  G  F  F  T  F  K  P  L  N  Q  P  D  L  C  S  Q  K  P  S  I  Q  K  S  K  K  K  L  T  D  P  Q  K  S  A  I  S  N  P  N  D  P  T  F  Y  P  P  I  Q  D  P  P  A  P  G  T  L  L  P  P  L  P  R  L  P  P  L  P  L  L  P  P  L  P  D  L  P  G  L  P  I  S  P  V  P  K  D  S  S  K  Y  Y  S  Q  S  E  T  A  A  K  P  N  F  F  N  P  I  G  G  L  P  L  P  P  N  P  L  L  P  P  P  S  I  L  P  P  N  P  F  L  P  P  P  S  I  I  P  P  I  I  P  S  P  P  P  S  I  F  P  P  L  F  P  S  P  P  P  S  I  F  P  P  L  I  P  S  P  P  R  S  P  P  S  L  F  P  P  L  I  P  P  F  I  P  G  L  T  P  S  P  P  P  P  P  P  S  L  F  P  P  I  I  P  G  F  P  G  V  P  P  A  S  T  S  S  S  L  Q  K  K  N  P  S  P  *  S  R  I  Q  L  H  K  H  L  S  Y  S  L  A  T  S  F  S  L  C  L  C  T  S  P  I  N  L  L  H  F  V  L  L  P  S  L  F  L  D  F  C  L  P  L  *  F  L  S  S  V  S  S  C  F  V  L  F  C  *  T  Y  *  I  G  N  Q  V  I  V  *  Y  V  S  Y  F  N  K  S  *  T  Y  Q  R  L  C  L  *  K  I  M  A  I  A  S  R  Y  L  T  F  S  V  K  E  K  L  *  T  C  W  Y  Y  M  C  Q  E  P  N  T  Y  I  *  F  L  N  F  C  S  T  E  E  M  N  *  T  N  S  W  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0092M23.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31844" stop="31724"/>
                    <exon start="31628" stop="30706"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1041</number_coding_nucleotides>
                  <number_encoded_amino_acids>347</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>STSQAENTRHRHHSTAVIEGTVFCDTCFQQHFSGASHFISGATVAVECADSVRRSSFYKEVKTNEHGKFSVDLPISVSKHVKKIKGCSVKLIKSSEPYCAVASTATSSSLHLKSRTQGTHIFSAGFFTFKPLNQPDLCSQKPSIQKSKKKLTDPQKSAISNPNDPTFYPPIQDPPAPGTLLPPLPRLPPLPLLPPLPDLPGLPISPVPKDSSKYYSQSETAAKPNFFNPIGGLPLPPNPLLPPPSILPPNPFLPPPSIIPPIIPSPPPSIFPPLFPSPPPSIFPPLIPSPPRSPPSLFPPLIPPFIPGLTPSPPPPPPSLFPPIIPGFPGVPPASTSSSLQKKNPSP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="30467" PGL_stop="30730"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30467" e_stop="30730"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.955"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.955">
            <gDNA_exon_boundary e_start="30467" e_stop="30730" e_length="264"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30467" stop="30730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420591" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGCTTTTATTGAAGTAGCTTACATATCATACAATCACTTGATTTCCTATCTAATATGTCTAACAAAACAAAACGAAACAAGATGAAACCGAGGATAAAAATTATAAAGGTAAACAGAAATCAAGAAACAAAGAAGGTAGTAAAACAAAGTGGAGTAGGTTTATTGGAGAAGTACAGAGGCATAAGGAAAAAGAAGTTGCCAAGCTATATGACAGGTGTTTGTGTAACTGTATTCTTGACTAAGGAGAGGGGTTCTTCTTTTGT</gDNA_template>
            <first_frame> *  L  L  L  K  *  L  T  Y  H  T  I  T  *  F  P  I  *  Y  V  *  Q  N  K  T  K  Q  D  E  T  E  D  K  N  Y  K  G  K  Q  K  S  R  N  K  E  G  S  K  T  K  W  S  R  F  I  G  E  V  Q  R  H  K  E  K  E  V  A  K  L  Y  D  R  C  L  C  N  C  I  L  D  *  G  E  G  F  F  F  C </first_frame>
            <second_frame>  S  F  Y  *  S  S  L  H  I  I  Q  S  L  D  F  L  S  N  M  S  N  K  T  K  R  N  K  M  K  P  R  I  K  I  I  K  V  N  R  N  Q  E  T  K  K  V  V  K  Q  S  G  V  G  L  L  E  K  Y  R  G  I  R  K  K  K  L  P  S  Y  M  T  G  V  C  V  T  V  F  L  T  K  E  R  G  S  S  F   </second_frame>
            <third_frame>   A  F  I  E  V  A  Y  I  S  Y  N  H  L  I  S  Y  L  I  C  L  T  K  Q  N  E  T  R  *  N  R  G  *  K  L  *  R  *  T  E  I  K  K  Q  R  R  *  *  N  K  V  E  *  V  Y  W  R  S  T  E  A  *  G  K  R  S  C  Q  A  I  *  Q  V  F  V  *  L  Y  S  *  L  R  R  G  V  L  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0092M23.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30480" stop="30728"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSLHIIQSLDFLSNMSNKTKRNKMKPRIKIIKVNRNQETKKVVKQSGVGLLEKYRGIRKKKLPSYMTGVCVTVFLTKERGSSF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="40947" PGL_stop="46632"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40947" e_stop="41059"/>
            <exon e_start="41736" e_stop="42074"/>
            <exon e_start="42840" e_stop="43266"/>
            <exon e_start="43568" e_stop="43677"/>
            <exon e_start="46037" e_stop="46419"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.921" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.948" acc_prob="0.753" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40947" e_stop="41059" e_length="113"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.985">
            <gDNA_intron_boundary i_start="41060" i_stop="41735" i_length="676"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41736" e_stop="42074" e_length="339"/>
          </exon>
          <intron i_serial="2" don_prob="0.921" acc_prob="0.986">
            <gDNA_intron_boundary i_start="42075" i_stop="42839" i_length="765"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42840" e_stop="43266" e_length="427"/>
          </exon>
          <intron i_serial="3" don_prob="0.948" acc_prob="0.753">
            <gDNA_intron_boundary i_start="43267" i_stop="43567" i_length="301"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="43568" e_stop="43677" e_length="110"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="43678" i_stop="46036" i_length="2359"/>
          </intron>
          <exon e_serial="5" e_score="0.997">
            <gDNA_exon_boundary e_start="46037" e_stop="46419" e_length="383"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40947" stop="41059"/>
              <exon start="41736" stop="42074"/>
              <exon start="42840" stop="42863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40952" stop="41059"/>
              <exon start="41736" stop="42074"/>
              <exon start="42840" stop="43266"/>
              <exon start="43568" stop="43677"/>
              <exon start="46037" stop="46419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745998" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40959" stop="41059"/>
              <exon start="41736" stop="42074"/>
              <exon start="42840" stop="42951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40959" stop="41059"/>
              <exon start="41736" stop="42074"/>
              <exon start="42840" stop="42951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40959" stop="41059"/>
              <exon start="41736" stop="42074"/>
              <exon start="42840" stop="42921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40959" stop="41059"/>
              <exon start="41736" stop="42074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40969" stop="41059"/>
              <exon start="41736" stop="42074"/>
              <exon start="42840" stop="43024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40970" stop="41059"/>
              <exon start="41736" stop="42074"/>
              <exon start="42840" stop="42947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203796" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40970" stop="41059"/>
              <exon start="41736" stop="41880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41005" stop="41059"/>
              <exon start="41736" stop="42074"/>
              <exon start="42840" stop="42876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41747" stop="42074"/>
              <exon start="42840" stop="43225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41748" stop="42074"/>
              <exon start="42840" stop="43266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41795" stop="42074"/>
              <exon start="42840" stop="42878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42890" stop="43266"/>
              <exon start="43568" stop="43677"/>
              <exon start="46037" stop="46372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542549" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42990" stop="43266"/>
              <exon start="43568" stop="43677"/>
              <exon start="46037" stop="46156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43595" stop="43677"/>
              <exon start="46037" stop="46388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E595917" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGAACATTGTTCATTGTGTAGATAGAAAAAATAAAAAAGAAACCCTTTGACCTCTGAAATTATCTATTTTTATCTTTCTCTCTATTATCCCCGCAATCTCCGCTATTTTCAG : GTGATACACAACAGTTTTTGAAATTTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACGAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATG : TATGCATCATTGTTTCATAGAGGAGAACAACATGCCATTGCTTCATCCACTCAAGGTACAACATCTTTGAGCTCCTCAGCATCCCTTGATAACTCACTATCTGATATGTACCGCTCTCCTCCAAGACCACTTCCTTACGATGCTGATCCAAGATACTTCCGCTTGCAACGTGATGGGCTAGTCTCAAGAAGGGAGAAAGGCTCAAGTCATTCACATGAGGAAACTGAACCACTACGAAGAAGTGATATTGATGATGATTCTGAATCTTTGGGTATGGGCAATAAATGGAAGGAGTCTGTATGTGAAGAAGGATCAAAAGAATATAATTCCAAGTCATTGAAATTCTCAACAGCTAAAACAACTACTGAGTTTACTCAAATTTGTTATTCTTCAGAAGATGAAGATGTCTGCCCGACATGTCTTGAAG : AATATACTGAAGAAAACCCAAAAATAATGACAAAATGCTCTCACCACTTCCACTTGGGTTGCATATATGAGTGGATGGAGAGAAGTGACAACTGTCCAGTATGCGGCAAG : GTGATGCTATTCAACGAGTCGCCATGATCTTTGCTCTTAAAAAGCTTTAGTCGTGGATGAAACCAGAAGGAGATAAGGGCAACAACTAGTAAACCAGAAAAGCTAATCAACGTAAAGTCATTGTGAATATCTGTGCAGCTAAATGTGTGACCATACATCAGTAAAAATGAAATTACTGTTCTCTCTGTTTGGAACTTTCGAGTTCATATTGATCATTTGATGCAACAGAAAACAGTTTCAAAGTACATCATGTAATCTTGTTTTGATTTGATGAGTGATTTCTCCCAGTGTATAGCACATTGTTCCTACTTTCACAAGTTGAATGTTGGCACATTTGTCTGCCAAAATCACTGGATCTGATACTATTTTATATCTGTTCCAAC</gDNA_template>
            <first_frame> K  N  I  V  H  C  V  D  R  K  N  K  K  E  T  L  *  P  L  K  L  S  I  F  I  F  L  S  I  I  P  A  I  S  A  I  F  R :   *  Y  T  T  V  F  E  I  F  S  E  G  L  G  H  E  G  H  Q  L  I  Q  G  F  L  K  R  E  G  A  Q  L  H  F  P  *  V  I  F  L  Q  V  L  H  P  *  P  S  N  H  K  N  G  G  L  T  M  I  A  V  E  G  F  *  V  T  N  I  Y  L  K  T  S  S  W  V  Q  F  V  A  A  C  E  M  N  V  K  I  L  P  I  Q  T  A  Q  Y  I  G  T  A  Y  A  F  D  V  L  F  K  T  S  C  I  C :   M  H  H  C  F  I  E  E  N  N  M  P  L  L  H  P  L  K  V  Q  H  L  *  A  P  Q  H  P  L  I  T  H  Y  L  I  C  T  A  L  L  Q  D  H  F  L  T  M  L  I  Q  D  T  S  A  C  N  V  M  G  *  S  Q  E  G  R  K  A  Q  V  I  H  M  R  K  L  N  H  Y  E  E  V  I  L  M  M  I  L  N  L  W  V  W  A  I  N  G  R  S  L  Y  V  K  K  D  Q  K  N  I  I  P  S  H  *  N  S  Q  Q  L  K  Q  L  L  S  L  L  K  F  V  I  L  Q  K  M  K  M  S  A  R  H  V  L  K  :  N  I  L  K  K  T  Q  K  *  *  Q  N  A  L  T  T  S  T  W  V  A  Y  M  S  G  W  R  E  V  T  T  V  Q  Y  A  A  R :   *  C  Y  S  T  S  R  H  D  L  C  S  *  K  A  L  V  V  D  E  T  R  R  R  *  G  Q  Q  L  V  N  Q  K  S  *  S  T  *  S  H  C  E  Y  L  C  S  *  M  C  D  H  T  S  V  K  M  K  L  L  F  S  L  F  G  T  F  E  F  I  L  I  I  *  C  N  R  K  Q  F  Q  S  T  S  C  N  L  V  L  I  *  *  V  I  S  P  S  V  *  H  I  V  P  T  F  T  S  *  M  L  A  H  L  S  A  K  I  T  G  S  D  T  I  L  Y  L  F  Q  </first_frame>
            <second_frame>  R  T  L  F  I  V  *  I  E  K  I  K  K  K  P  F  D  L  *  N  Y  L  F  L  S  F  S  L  L  S  P  Q  S  P  L  F  S   : G  D  T  Q  Q  F  L  K  F  F  L  K  V  L  V  M  K  G  I  N  S  F  R  V  S  *  R  E  R  V  P  N  C  I  F  R  K  L  Y  S  Y  K  F  C  I  H  N  H  L  I  T  R  M  E  D  *  Q  *  *  P  W  K  V  F  E  L  R  T  F  I  *  R  H  H  H  G  C  S  L  L  L  L  A  R  *  M  *  R  F  C  Q  S  K  Q  L  N  I  *  E  L  L  M  P  S  M  F  C  S  K  L  L  A  Y   : V  C  I  I  V  S  *  R  R  T  T  C  H  C  F  I  H  S  R  Y  N  I  F  E  L  L  S  I  P  *  *  L  T  I  *  Y  V  P  L  S  S  K  T  T  S  L  R  C  *  S  K  I  L  P  L  A  T  *  W  A  S  L  K  K  G  E  R  L  K  S  F  T  *  G  N  *  T  T  T  K  K  *  Y  *  *  *  F  *  I  F  G  Y  G  Q  *  M  E  G  V  C  M  *  R  R  I  K  R  I  *  F  Q  V  I  E  I  L  N  S  *  N  N  Y  *  V  Y  S  N  L  L  F  F  R  R  *  R  C  L  P  D  M  S  *  R :   I  Y  *  R  K  P  K  N  N  D  K  M  L  S  P  L  P  L  G  L  H  I  *  V  D  G  E  K  *  Q  L  S  S  M  R  Q   : G  D  A  I  Q  R  V  A  M  I  F  A  L  K  K  L  *  S  W  M  K  P  E  G  D  K  G  N  N  *  *  T  R  K  A  N  Q  R  K  V  I  V  N  I  C  A  A  K  C  V  T  I  H  Q  *  K  *  N  Y  C  S  L  C  L  E  L  S  S  S  Y  *  S  F  D  A  T  E  N  S  F  K  V  H  H  V  I  L  F  *  F  D  E  *  F  L  P  V  Y  S  T  L  F  L  L  S  Q  V  E  C  W  H  I  C  L  P  K  S  L  D  L  I  L  F  Y  I  C  S  N </second_frame>
            <third_frame>   E  H  C  S  L  C  R  *  K  K  *  K  R  N  P  L  T  S  E  I  I  Y  F  Y  L  S  L  Y  Y  P  R  N  L  R  Y  F  Q  :  V  I  H  N  S  F  *  N  F  F  *  R  S  W  S  *  R  A  S  T  H  S  G  F  P  E  E  R  G  C  P  I  A  F  S  V  S  Y  I  L  T  S  F  A  S  I  T  I  *  S  Q  E  W  R  I  D  N  D  S  R  G  R  F  L  S  Y  E  H  L  F  E  D  I  I  M  G  A  V  C  C  C  L  R  D  E  C  E  D  F  A  N  P  N  S  S  I  Y  R  N  C  L  C  L  R  C  F  V  Q  N  F  L  H  M  :  Y  A  S  L  F  H  R  G  E  Q  H  A  I  A  S  S  T  Q  G  T  T  S  L  S  S  S  A  S  L  D  N  S  L  S  D  M  Y  R  S  P  P  R  P  L  P  Y  D  A  D  P  R  Y  F  R  L  Q  R  D  G  L  V  S  R  R  E  K  G  S  S  H  S  H  E  E  T  E  P  L  R  R  S  D  I  D  D  D  S  E  S  L  G  M  G  N  K  W  K  E  S  V  C  E  E  G  S  K  E  Y  N  S  K  S  L  K  F  S  T  A  K  T  T  T  E  F  T  Q  I  C  Y  S  S  E  D  E  D  V  C  P  T  C  L  E   : E  Y  T  E  E  N  P  K  I  M  T  K  C  S  H  H  F  H  L  G  C  I  Y  E  W  M  E  R  S  D  N  C  P  V  C  G  K  :  V  M  L  F  N  E  S  P  *  S  L  L  L  K  S  F  S  R  G  *  N  Q  K  E  I  R  A  T  T  S  K  P  E  K  L  I  N  V  K  S  L  *  I  S  V  Q  L  N  V  *  P  Y  I  S  K  N  E  I  T  V  L  S  V  W  N  F  R  V  H  I  D  H  L  M  Q  Q  K  T  V  S  K  Y  I  M  *  S  C  F  D  L  M  S  D  F  S  Q  C  I  A  H  C  S  Y  F  H  K  L  N  V  G  T  F  V  C  Q  N  H  W  I  *  Y  Y  F  I  S  V  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0092M23.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41883" stop="42074"/>
                    <exon start="42840" stop="43266"/>
                    <exon start="43568" stop="43677"/>
                    <exon start="46037" stop="46063"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>753</number_coding_nucleotides>
                  <number_encoded_amino_acids>251</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SQEWRIDNDSRGRFLSYEHLFEDIIMGAVCCCLRDECEDFANPNSSIYRNCLCLRCFVQNFLHMYASLFHRGEQHAIASSTQGTTSLSSSASLDNSLSDMYRSPPRPLPYDADPRYFRLQRDGLVSRREKGSSHSHEETEPLRRSDIDDDSESLGMGNKWKESVCEEGSKEYNSKSLKFSTAKTTTEFTQICYSSEDEDVCPTCLEEYTEENPKIMTKCSHHFHLGCIYEWMERSDNCPVCGKVMLFNESP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="40947" e_stop="41059"/>
            <exon e_start="41736" e_stop="42074"/>
            <exon e_start="42840" e_stop="42894"/>
            <exon e_start="42965" e_stop="43266"/>
            <exon e_start="43568" e_stop="43677"/>
            <exon e_start="46037" e_stop="46388"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.921" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.948" acc_prob="0.753" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40947" e_stop="41059" e_length="113"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.985">
            <gDNA_intron_boundary i_start="41060" i_stop="41735" i_length="676"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41736" e_stop="42074" e_length="339"/>
          </exon>
          <intron i_serial="2" don_prob="0.921" acc_prob="0.986">
            <gDNA_intron_boundary i_start="42075" i_stop="42839" i_length="765"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42840" e_stop="42894" e_length="55"/>
          </exon>
          <intron i_serial="3" don_prob="0.974" acc_prob="0.000">
            <gDNA_intron_boundary i_start="42895" i_stop="42964" i_length="70"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="42965" e_stop="43266" e_length="302"/>
          </exon>
          <intron i_serial="4" don_prob="0.948" acc_prob="0.753">
            <gDNA_intron_boundary i_start="43267" i_stop="43567" i_length="301"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="43568" e_stop="43677" e_length="110"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="43678" i_stop="46036" i_length="2359"/>
          </intron>
          <exon e_serial="6" e_score="0.909">
            <gDNA_exon_boundary e_start="46037" e_stop="46388" e_length="352"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40947" stop="41059"/>
              <exon start="41736" stop="42074"/>
              <exon start="42840" stop="42863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40959" stop="41059"/>
              <exon start="41736" stop="42074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40970" stop="41059"/>
              <exon start="41736" stop="41880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41005" stop="41059"/>
              <exon start="41736" stop="42074"/>
              <exon start="42840" stop="42876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41749" stop="42074"/>
              <exon start="42840" stop="42894"/>
              <exon start="42965" stop="43108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41795" stop="42074"/>
              <exon start="42840" stop="42878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42990" stop="43266"/>
              <exon start="43568" stop="43677"/>
              <exon start="46037" stop="46156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43595" stop="43677"/>
              <exon start="46037" stop="46388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E595917" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGAACATTGTTCATTGTGTAGATAGAAAAAATAAAAAAGAAACCCTTTGACCTCTGAAATTATCTATTTTTATCTTTCTCTCTATTATCCCCGCAATCTCCGCTATTTTCAG : GTGATACACAACAGTTTTTGAAATTTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACGAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATG : TATGCATCATTGTTTCATAGAGGAGAACAACATGCCATTGCTTCATCCACTCAAG : ACCACTTCCTTACGATGCTGATCCAAGATACTTCCGCTTGCAACGTGATGGGCTAGTCTCAAGAAGGGAGAAAGGCTCAAGTCATTCACATGAGGAAACTGAACCACTACGAAGAAGTGATATTGATGATGATTCTGAATCTTTGGGTATGGGCAATAAATGGAAGGAGTCTGTATGTGAAGAAGGATCAAAAGAATATAATTCCAAGTCATTGAAATTCTCAACAGCTAAAACAACTACTGAGTTTACTCAAATTTGTTATTCTTCAGAAGATGAAGATGTCTGCCCGACATGTCTTGAAG : AATATACTGAAGAAAACCCAAAAATAATGACAAAATGCTCTCACCACTTCCACTTGGGTTGCATATATGAGTGGATGGAGAGAAGTGACAACTGTCCAGTATGCGGCAAG : GTGATGCTATTCAACGAGTCGCCATGATCTTTGCTCTTAAAAAGCTTTAGTCGTGGATGAAACCAGAAGGAGATAAGGGCAACAACTAGTAAACCAGAAAAGCTAATCAACGTAAAGTCATTGTGAATATCTGTGCAGCTAAATGTGTGACCATACATCAGTAAAAATGAAATTACTGTTCTCTCTGTTTGGAACTTTCGAGTTCATATTGATCATTTGATGCAACAGAAAACAGTTTCAAAGTACATCATGTAATCTTGTTTTGATTTGATGAGTGATTTCTCCCAGTGTATAGCACATTGTTCCTACTTTCACAAGTTGAATGTTGGCACATTTGTCTGCCAAAATCACT</gDNA_template>
            <first_frame> K  N  I  V  H  C  V  D  R  K  N  K  K  E  T  L  *  P  L  K  L  S  I  F  I  F  L  S  I  I  P  A  I  S  A  I  F  R :   *  Y  T  T  V  F  E  I  F  S  E  G  L  G  H  E  G  H  Q  L  I  Q  G  F  L  K  R  E  G  A  Q  L  H  F  P  *  V  I  F  L  Q  V  L  H  P  *  P  S  N  H  K  N  G  G  L  T  M  I  A  V  E  G  F  *  V  T  N  I  Y  L  K  T  S  S  W  V  Q  F  V  A  A  C  E  M  N  V  K  I  L  P  I  Q  T  A  Q  Y  I  G  T  A  Y  A  F  D  V  L  F  K  T  S  C  I  C :   M  H  H  C  F  I  E  E  N  N  M  P  L  L  H  P  L  K  :  T  T  S  L  R  C  *  S  K  I  L  P  L  A  T  *  W  A  S  L  K  K  G  E  R  L  K  S  F  T  *  G  N  *  T  T  T  K  K  *  Y  *  *  *  F  *  I  F  G  Y  G  Q  *  M  E  G  V  C  M  *  R  R  I  K  R  I  *  F  Q  V  I  E  I  L  N  S  *  N  N  Y  *  V  Y  S  N  L  L  F  F  R  R  *  R  C  L  P  D  M  S  *  R :   I  Y  *  R  K  P  K  N  N  D  K  M  L  S  P  L  P  L  G  L  H  I  *  V  D  G  E  K  *  Q  L  S  S  M  R  Q   : G  D  A  I  Q  R  V  A  M  I  F  A  L  K  K  L  *  S  W  M  K  P  E  G  D  K  G  N  N  *  *  T  R  K  A  N  Q  R  K  V  I  V  N  I  C  A  A  K  C  V  T  I  H  Q  *  K  *  N  Y  C  S  L  C  L  E  L  S  S  S  Y  *  S  F  D  A  T  E  N  S  F  K  V  H  H  V  I  L  F  *  F  D  E  *  F  L  P  V  Y  S  T  L  F  L  L  S  Q  V  E  C  W  H  I  C  L  P  K  S   </first_frame>
            <second_frame>  R  T  L  F  I  V  *  I  E  K  I  K  K  K  P  F  D  L  *  N  Y  L  F  L  S  F  S  L  L  S  P  Q  S  P  L  F  S   : G  D  T  Q  Q  F  L  K  F  F  L  K  V  L  V  M  K  G  I  N  S  F  R  V  S  *  R  E  R  V  P  N  C  I  F  R  K  L  Y  S  Y  K  F  C  I  H  N  H  L  I  T  R  M  E  D  *  Q  *  *  P  W  K  V  F  E  L  R  T  F  I  *  R  H  H  H  G  C  S  L  L  L  L  A  R  *  M  *  R  F  C  Q  S  K  Q  L  N  I  *  E  L  L  M  P  S  M  F  C  S  K  L  L  A  Y   : V  C  I  I  V  S  *  R  R  T  T  C  H  C  F  I  H  S  R :   P  L  P  Y  D  A  D  P  R  Y  F  R  L  Q  R  D  G  L  V  S  R  R  E  K  G  S  S  H  S  H  E  E  T  E  P  L  R  R  S  D  I  D  D  D  S  E  S  L  G  M  G  N  K  W  K  E  S  V  C  E  E  G  S  K  E  Y  N  S  K  S  L  K  F  S  T  A  K  T  T  T  E  F  T  Q  I  C  Y  S  S  E  D  E  D  V  C  P  T  C  L  E   : E  Y  T  E  E  N  P  K  I  M  T  K  C  S  H  H  F  H  L  G  C  I  Y  E  W  M  E  R  S  D  N  C  P  V  C  G  K  :  V  M  L  F  N  E  S  P  *  S  L  L  L  K  S  F  S  R  G  *  N  Q  K  E  I  R  A  T  T  S  K  P  E  K  L  I  N  V  K  S  L  *  I  S  V  Q  L  N  V  *  P  Y  I  S  K  N  E  I  T  V  L  S  V  W  N  F  R  V  H  I  D  H  L  M  Q  Q  K  T  V  S  K  Y  I  M  *  S  C  F  D  L  M  S  D  F  S  Q  C  I  A  H  C  S  Y  F  H  K  L  N  V  G  T  F  V  C  Q  N  H  </second_frame>
            <third_frame>   E  H  C  S  L  C  R  *  K  K  *  K  R  N  P  L  T  S  E  I  I  Y  F  Y  L  S  L  Y  Y  P  R  N  L  R  Y  F  Q  :  V  I  H  N  S  F  *  N  F  F  *  R  S  W  S  *  R  A  S  T  H  S  G  F  P  E  E  R  G  C  P  I  A  F  S  V  S  Y  I  L  T  S  F  A  S  I  T  I  *  S  Q  E  W  R  I  D  N  D  S  R  G  R  F  L  S  Y  E  H  L  F  E  D  I  I  M  G  A  V  C  C  C  L  R  D  E  C  E  D  F  A  N  P  N  S  S  I  Y  R  N  C  L  C  L  R  C  F  V  Q  N  F  L  H  M  :  Y  A  S  L  F  H  R  G  E  Q  H  A  I  A  S  S  T  Q   : D  H  F  L  T  M  L  I  Q  D  T  S  A  C  N  V  M  G  *  S  Q  E  G  R  K  A  Q  V  I  H  M  R  K  L  N  H  Y  E  E  V  I  L  M  M  I  L  N  L  W  V  W  A  I  N  G  R  S  L  Y  V  K  K  D  Q  K  N  I  I  P  S  H  *  N  S  Q  Q  L  K  Q  L  L  S  L  L  K  F  V  I  L  Q  K  M  K  M  S  A  R  H  V  L  K  :  N  I  L  K  K  T  Q  K  *  *  Q  N  A  L  T  T  S  T  W  V  A  Y  M  S  G  W  R  E  V  T  T  V  Q  Y  A  A  R :   *  C  Y  S  T  S  R  H  D  L  C  S  *  K  A  L  V  V  D  E  T  R  R  R  *  G  Q  Q  L  V  N  Q  K  S  *  S  T  *  S  H  C  E  Y  L  C  S  *  M  C  D  H  T  S  V  K  M  K  L  L  F  S  L  F  G  T  F  E  F  I  L  I  I  *  C  N  R  K  Q  F  Q  S  T  S  C  N  L  V  L  I  *  *  V  I  S  P  S  V  *  H  I  V  P  T  F  T  S  *  M  L  A  H  L  S  A  K  I  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0092M23.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42860" stop="42894"/>
                    <exon start="42965" stop="43266"/>
                    <exon start="43568" stop="43677"/>
                    <exon start="46037" stop="46063"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>471</number_coding_nucleotides>
                  <number_encoded_amino_acids>157</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRTTCHCFIHSRPLPYDADPRYFRLQRDGLVSRREKGSSHSHEETEPLRRSDIDDDSESLGMGNKWKESVCEEGSKEYNSKSLKFSTAKTTTEFTQICYSSEDEDVCPTCLEEYTEENPKIMTKCSHHFHLGCIYEWMERSDNCPVCGKVMLFNESP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="41729" e_stop="42074"/>
            <exon e_start="42840" e_stop="43266"/>
            <exon e_start="43568" e_stop="43677"/>
            <exon e_start="46037" e_stop="46388"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.921" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.948" acc_prob="0.753" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="41729" e_stop="42074" e_length="346"/>
          </exon>
          <intron i_serial="1" don_prob="0.921" acc_prob="0.986">
            <gDNA_intron_boundary i_start="42075" i_stop="42839" i_length="765"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42840" e_stop="43266" e_length="427"/>
          </exon>
          <intron i_serial="2" don_prob="0.948" acc_prob="0.753">
            <gDNA_intron_boundary i_start="43267" i_stop="43567" i_length="301"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="43568" e_stop="43677" e_length="110"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="43678" i_stop="46036" i_length="2359"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="46037" e_stop="46388" e_length="352"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41729" stop="42074"/>
              <exon start="42840" stop="43023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41730" stop="42074"/>
              <exon start="42840" stop="43266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613990" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41747" stop="42074"/>
              <exon start="42840" stop="43225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41748" stop="42074"/>
              <exon start="42840" stop="43266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41795" stop="42074"/>
              <exon start="42840" stop="42878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42890" stop="43266"/>
              <exon start="43568" stop="43677"/>
              <exon start="46037" stop="46372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542549" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42990" stop="43266"/>
              <exon start="43568" stop="43677"/>
              <exon start="46037" stop="46156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43595" stop="43677"/>
              <exon start="46037" stop="46388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E595917" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTACAGGTGATACACAACAGTTTTTGAAATTTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACGAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATG : TATGCATCATTGTTTCATAGAGGAGAACAACATGCCATTGCTTCATCCACTCAAGGTACAACATCTTTGAGCTCCTCAGCATCCCTTGATAACTCACTATCTGATATGTACCGCTCTCCTCCAAGACCACTTCCTTACGATGCTGATCCAAGATACTTCCGCTTGCAACGTGATGGGCTAGTCTCAAGAAGGGAGAAAGGCTCAAGTCATTCACATGAGGAAACTGAACCACTACGAAGAAGTGATATTGATGATGATTCTGAATCTTTGGGTATGGGCAATAAATGGAAGGAGTCTGTATGTGAAGAAGGATCAAAAGAATATAATTCCAAGTCATTGAAATTCTCAACAGCTAAAACAACTACTGAGTTTACTCAAATTTGTTATTCTTCAGAAGATGAAGATGTCTGCCCGACATGTCTTGAAG : AATATACTGAAGAAAACCCAAAAATAATGACAAAATGCTCTCACCACTTCCACTTGGGTTGCATATATGAGTGGATGGAGAGAAGTGACAACTGTCCAGTATGCGGCAAG : GTGATGCTATTCAACGAGTCGCCATGATCTTTGCTCTTAAAAAGCTTTAGTCGTGGATGAAACCAGAAGGAGATAAGGGCAACAACTAGTAAACCAGAAAAGCTAATCAACGTAAAGTCATTGTGAATATCTGTGCAGCTAAATGTGTGACCATACATCAGTAAAAATGAAATTACTGTTCTCTCTGTTTGGAACTTTCGAGTTCATATTGATCATTTGATGCAACAGAAAACAGTTTCAAAGTACATCATGTAATCTTGTTTTGATTTGATGAGTGATTTCTCCCAGTGTATAGCACATTGTTCCTACTTTCACAAGTTGAATGTTGGCACATTTGTCTGCCAAAATCACT</gDNA_template>
            <first_frame> C  T  G  D  T  Q  Q  F  L  K  F  F  L  K  V  L  V  M  K  G  I  N  S  F  R  V  S  *  R  E  R  V  P  N  C  I  F  R  K  L  Y  S  Y  K  F  C  I  H  N  H  L  I  T  R  M  E  D  *  Q  *  *  P  W  K  V  F  E  L  R  T  F  I  *  R  H  H  H  G  C  S  L  L  L  L  A  R  *  M  *  R  F  C  Q  S  K  Q  L  N  I  *  E  L  L  M  P  S  M  F  C  S  K  L  L  A  Y   : V  C  I  I  V  S  *  R  R  T  T  C  H  C  F  I  H  S  R  Y  N  I  F  E  L  L  S  I  P  *  *  L  T  I  *  Y  V  P  L  S  S  K  T  T  S  L  R  C  *  S  K  I  L  P  L  A  T  *  W  A  S  L  K  K  G  E  R  L  K  S  F  T  *  G  N  *  T  T  T  K  K  *  Y  *  *  *  F  *  I  F  G  Y  G  Q  *  M  E  G  V  C  M  *  R  R  I  K  R  I  *  F  Q  V  I  E  I  L  N  S  *  N  N  Y  *  V  Y  S  N  L  L  F  F  R  R  *  R  C  L  P  D  M  S  *  R :   I  Y  *  R  K  P  K  N  N  D  K  M  L  S  P  L  P  L  G  L  H  I  *  V  D  G  E  K  *  Q  L  S  S  M  R  Q   : G  D  A  I  Q  R  V  A  M  I  F  A  L  K  K  L  *  S  W  M  K  P  E  G  D  K  G  N  N  *  *  T  R  K  A  N  Q  R  K  V  I  V  N  I  C  A  A  K  C  V  T  I  H  Q  *  K  *  N  Y  C  S  L  C  L  E  L  S  S  S  Y  *  S  F  D  A  T  E  N  S  F  K  V  H  H  V  I  L  F  *  F  D  E  *  F  L  P  V  Y  S  T  L  F  L  L  S  Q  V  E  C  W  H  I  C  L  P  K  S   </first_frame>
            <second_frame>  V  Q  V  I  H  N  S  F  *  N  F  F  *  R  S  W  S  *  R  A  S  T  H  S  G  F  P  E  E  R  G  C  P  I  A  F  S  V  S  Y  I  L  T  S  F  A  S  I  T  I  *  S  Q  E  W  R  I  D  N  D  S  R  G  R  F  L  S  Y  E  H  L  F  E  D  I  I  M  G  A  V  C  C  C  L  R  D  E  C  E  D  F  A  N  P  N  S  S  I  Y  R  N  C  L  C  L  R  C  F  V  Q  N  F  L  H  M  :  Y  A  S  L  F  H  R  G  E  Q  H  A  I  A  S  S  T  Q  G  T  T  S  L  S  S  S  A  S  L  D  N  S  L  S  D  M  Y  R  S  P  P  R  P  L  P  Y  D  A  D  P  R  Y  F  R  L  Q  R  D  G  L  V  S  R  R  E  K  G  S  S  H  S  H  E  E  T  E  P  L  R  R  S  D  I  D  D  D  S  E  S  L  G  M  G  N  K  W  K  E  S  V  C  E  E  G  S  K  E  Y  N  S  K  S  L  K  F  S  T  A  K  T  T  T  E  F  T  Q  I  C  Y  S  S  E  D  E  D  V  C  P  T  C  L  E   : E  Y  T  E  E  N  P  K  I  M  T  K  C  S  H  H  F  H  L  G  C  I  Y  E  W  M  E  R  S  D  N  C  P  V  C  G  K  :  V  M  L  F  N  E  S  P  *  S  L  L  L  K  S  F  S  R  G  *  N  Q  K  E  I  R  A  T  T  S  K  P  E  K  L  I  N  V  K  S  L  *  I  S  V  Q  L  N  V  *  P  Y  I  S  K  N  E  I  T  V  L  S  V  W  N  F  R  V  H  I  D  H  L  M  Q  Q  K  T  V  S  K  Y  I  M  *  S  C  F  D  L  M  S  D  F  S  Q  C  I  A  H  C  S  Y  F  H  K  L  N  V  G  T  F  V  C  Q  N  H  </second_frame>
            <third_frame>   Y  R  *  Y  T  T  V  F  E  I  F  S  E  G  L  G  H  E  G  H  Q  L  I  Q  G  F  L  K  R  E  G  A  Q  L  H  F  P  *  V  I  F  L  Q  V  L  H  P  *  P  S  N  H  K  N  G  G  L  T  M  I  A  V  E  G  F  *  V  T  N  I  Y  L  K  T  S  S  W  V  Q  F  V  A  A  C  E  M  N  V  K  I  L  P  I  Q  T  A  Q  Y  I  G  T  A  Y  A  F  D  V  L  F  K  T  S  C  I  C :   M  H  H  C  F  I  E  E  N  N  M  P  L  L  H  P  L  K  V  Q  H  L  *  A  P  Q  H  P  L  I  T  H  Y  L  I  C  T  A  L  L  Q  D  H  F  L  T  M  L  I  Q  D  T  S  A  C  N  V  M  G  *  S  Q  E  G  R  K  A  Q  V  I  H  M  R  K  L  N  H  Y  E  E  V  I  L  M  M  I  L  N  L  W  V  W  A  I  N  G  R  S  L  Y  V  K  K  D  Q  K  N  I  I  P  S  H  *  N  S  Q  Q  L  K  Q  L  L  S  L  L  K  F  V  I  L  Q  K  M  K  M  S  A  R  H  V  L  K  :  N  I  L  K  K  T  Q  K  *  *  Q  N  A  L  T  T  S  T  W  V  A  Y  M  S  G  W  R  E  V  T  T  V  Q  Y  A  A  R :   *  C  Y  S  T  S  R  H  D  L  C  S  *  K  A  L  V  V  D  E  T  R  R  R  *  G  Q  Q  L  V  N  Q  K  S  *  S  T  *  S  H  C  E  Y  L  C  S  *  M  C  D  H  T  S  V  K  M  K  L  L  F  S  L  F  G  T  F  E  F  I  L  I  I  *  C  N  R  K  Q  F  Q  S  T  S  C  N  L  V  L  I  *  *  V  I  S  P  S  V  *  H  I  V  P  T  F  T  S  *  M  L  A  H  L  S  A  K  I  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0092M23.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41883" stop="42074"/>
                    <exon start="42840" stop="43266"/>
                    <exon start="43568" stop="43677"/>
                    <exon start="46037" stop="46063"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>753</number_coding_nucleotides>
                  <number_encoded_amino_acids>251</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SQEWRIDNDSRGRFLSYEHLFEDIIMGAVCCCLRDECEDFANPNSSIYRNCLCLRCFVQNFLHMYASLFHRGEQHAIASSTQGTTSLSSSASLDNSLSDMYRSPPRPLPYDADPRYFRLQRDGLVSRREKGSSHSHEETEPLRRSDIDDDSESLGMGNKWKESVCEEGSKEYNSKSLKFSTAKTTTEFTQICYSSEDEDVCPTCLEEYTEENPKIMTKCSHHFHLGCIYEWMERSDNCPVCGKVMLFNESP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="41142" e_stop="41208"/>
            <exon e_start="41736" e_stop="42074"/>
            <exon e_start="42840" e_stop="43266"/>
            <exon e_start="43568" e_stop="43677"/>
            <exon e_start="46037" e_stop="46388"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.931" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.921" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.948" acc_prob="0.753" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="41142" e_stop="41208" e_length="67"/>
          </exon>
          <intron i_serial="1" don_prob="0.931" acc_prob="0.985">
            <gDNA_intron_boundary i_start="41209" i_stop="41735" i_length="527"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41736" e_stop="42074" e_length="339"/>
          </exon>
          <intron i_serial="2" don_prob="0.921" acc_prob="0.986">
            <gDNA_intron_boundary i_start="42075" i_stop="42839" i_length="765"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42840" e_stop="43266" e_length="427"/>
          </exon>
          <intron i_serial="3" don_prob="0.948" acc_prob="0.753">
            <gDNA_intron_boundary i_start="43267" i_stop="43567" i_length="301"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="43568" e_stop="43677" e_length="110"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="43678" i_stop="46036" i_length="2359"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="46037" e_stop="46388" e_length="352"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41142" stop="41208"/>
              <exon start="41736" stop="42074"/>
              <exon start="42840" stop="43266"/>
              <exon start="43568" stop="43617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41747" stop="42074"/>
              <exon start="42840" stop="43225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41748" stop="42074"/>
              <exon start="42840" stop="43266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41795" stop="42074"/>
              <exon start="42840" stop="42878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42890" stop="43266"/>
              <exon start="43568" stop="43677"/>
              <exon start="46037" stop="46372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542549" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42990" stop="43266"/>
              <exon start="43568" stop="43677"/>
              <exon start="46037" stop="46156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43595" stop="43677"/>
              <exon start="46037" stop="46388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E595917" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCGATTGTAAACTGTTATGAACTGAAATGGGTTTCATCGGAATCGGTTGATGCAGAGATTTTCACG : GTGATACACAACAGTTTTTGAAATTTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACGAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATG : TATGCATCATTGTTTCATAGAGGAGAACAACATGCCATTGCTTCATCCACTCAAGGTACAACATCTTTGAGCTCCTCAGCATCCCTTGATAACTCACTATCTGATATGTACCGCTCTCCTCCAAGACCACTTCCTTACGATGCTGATCCAAGATACTTCCGCTTGCAACGTGATGGGCTAGTCTCAAGAAGGGAGAAAGGCTCAAGTCATTCACATGAGGAAACTGAACCACTACGAAGAAGTGATATTGATGATGATTCTGAATCTTTGGGTATGGGCAATAAATGGAAGGAGTCTGTATGTGAAGAAGGATCAAAAGAATATAATTCCAAGTCATTGAAATTCTCAACAGCTAAAACAACTACTGAGTTTACTCAAATTTGTTATTCTTCAGAAGATGAAGATGTCTGCCCGACATGTCTTGAAG : AATATACTGAAGAAAACCCAAAAATAATGACAAAATGCTCTCACCACTTCCACTTGGGTTGCATATATGAGTGGATGGAGAGAAGTGACAACTGTCCAGTATGCGGCAAG : GTGATGCTATTCAACGAGTCGCCATGATCTTTGCTCTTAAAAAGCTTTAGTCGTGGATGAAACCAGAAGGAGATAAGGGCAACAACTAGTAAACCAGAAAAGCTAATCAACGTAAAGTCATTGTGAATATCTGTGCAGCTAAATGTGTGACCATACATCAGTAAAAATGAAATTACTGTTCTCTCTGTTTGGAACTTTCGAGTTCATATTGATCATTTGATGCAACAGAAAACAGTTTCAAAGTACATCATGTAATCTTGTTTTGATTTGATGAGTGATTTCTCCCAGTGTATAGCACATTGTTCCTACTTTCACAAGTTGAATGTTGGCACATTTGTCTGCCAAAATCACT</gDNA_template>
            <first_frame> I  D  C  K  L  L  *  T  E  M  G  F  I  G  I  G  *  C  R  D  F  H   : G  D  T  Q  Q  F  L  K  F  F  L  K  V  L  V  M  K  G  I  N  S  F  R  V  S  *  R  E  R  V  P  N  C  I  F  R  K  L  Y  S  Y  K  F  C  I  H  N  H  L  I  T  R  M  E  D  *  Q  *  *  P  W  K  V  F  E  L  R  T  F  I  *  R  H  H  H  G  C  S  L  L  L  L  A  R  *  M  *  R  F  C  Q  S  K  Q  L  N  I  *  E  L  L  M  P  S  M  F  C  S  K  L  L  A  Y   : V  C  I  I  V  S  *  R  R  T  T  C  H  C  F  I  H  S  R  Y  N  I  F  E  L  L  S  I  P  *  *  L  T  I  *  Y  V  P  L  S  S  K  T  T  S  L  R  C  *  S  K  I  L  P  L  A  T  *  W  A  S  L  K  K  G  E  R  L  K  S  F  T  *  G  N  *  T  T  T  K  K  *  Y  *  *  *  F  *  I  F  G  Y  G  Q  *  M  E  G  V  C  M  *  R  R  I  K  R  I  *  F  Q  V  I  E  I  L  N  S  *  N  N  Y  *  V  Y  S  N  L  L  F  F  R  R  *  R  C  L  P  D  M  S  *  R :   I  Y  *  R  K  P  K  N  N  D  K  M  L  S  P  L  P  L  G  L  H  I  *  V  D  G  E  K  *  Q  L  S  S  M  R  Q   : G  D  A  I  Q  R  V  A  M  I  F  A  L  K  K  L  *  S  W  M  K  P  E  G  D  K  G  N  N  *  *  T  R  K  A  N  Q  R  K  V  I  V  N  I  C  A  A  K  C  V  T  I  H  Q  *  K  *  N  Y  C  S  L  C  L  E  L  S  S  S  Y  *  S  F  D  A  T  E  N  S  F  K  V  H  H  V  I  L  F  *  F  D  E  *  F  L  P  V  Y  S  T  L  F  L  L  S  Q  V  E  C  W  H  I  C  L  P  K  S   </first_frame>
            <second_frame>  S  I  V  N  C  Y  E  L  K  W  V  S  S  E  S  V  D  A  E  I  F  T  :  V  I  H  N  S  F  *  N  F  F  *  R  S  W  S  *  R  A  S  T  H  S  G  F  P  E  E  R  G  C  P  I  A  F  S  V  S  Y  I  L  T  S  F  A  S  I  T  I  *  S  Q  E  W  R  I  D  N  D  S  R  G  R  F  L  S  Y  E  H  L  F  E  D  I  I  M  G  A  V  C  C  C  L  R  D  E  C  E  D  F  A  N  P  N  S  S  I  Y  R  N  C  L  C  L  R  C  F  V  Q  N  F  L  H  M  :  Y  A  S  L  F  H  R  G  E  Q  H  A  I  A  S  S  T  Q  G  T  T  S  L  S  S  S  A  S  L  D  N  S  L  S  D  M  Y  R  S  P  P  R  P  L  P  Y  D  A  D  P  R  Y  F  R  L  Q  R  D  G  L  V  S  R  R  E  K  G  S  S  H  S  H  E  E  T  E  P  L  R  R  S  D  I  D  D  D  S  E  S  L  G  M  G  N  K  W  K  E  S  V  C  E  E  G  S  K  E  Y  N  S  K  S  L  K  F  S  T  A  K  T  T  T  E  F  T  Q  I  C  Y  S  S  E  D  E  D  V  C  P  T  C  L  E   : E  Y  T  E  E  N  P  K  I  M  T  K  C  S  H  H  F  H  L  G  C  I  Y  E  W  M  E  R  S  D  N  C  P  V  C  G  K  :  V  M  L  F  N  E  S  P  *  S  L  L  L  K  S  F  S  R  G  *  N  Q  K  E  I  R  A  T  T  S  K  P  E  K  L  I  N  V  K  S  L  *  I  S  V  Q  L  N  V  *  P  Y  I  S  K  N  E  I  T  V  L  S  V  W  N  F  R  V  H  I  D  H  L  M  Q  Q  K  T  V  S  K  Y  I  M  *  S  C  F  D  L  M  S  D  F  S  Q  C  I  A  H  C  S  Y  F  H  K  L  N  V  G  T  F  V  C  Q  N  H  </second_frame>
            <third_frame>   R  L  *  T  V  M  N  *  N  G  F  H  R  N  R  L  M  Q  R  F  S  R :   *  Y  T  T  V  F  E  I  F  S  E  G  L  G  H  E  G  H  Q  L  I  Q  G  F  L  K  R  E  G  A  Q  L  H  F  P  *  V  I  F  L  Q  V  L  H  P  *  P  S  N  H  K  N  G  G  L  T  M  I  A  V  E  G  F  *  V  T  N  I  Y  L  K  T  S  S  W  V  Q  F  V  A  A  C  E  M  N  V  K  I  L  P  I  Q  T  A  Q  Y  I  G  T  A  Y  A  F  D  V  L  F  K  T  S  C  I  C :   M  H  H  C  F  I  E  E  N  N  M  P  L  L  H  P  L  K  V  Q  H  L  *  A  P  Q  H  P  L  I  T  H  Y  L  I  C  T  A  L  L  Q  D  H  F  L  T  M  L  I  Q  D  T  S  A  C  N  V  M  G  *  S  Q  E  G  R  K  A  Q  V  I  H  M  R  K  L  N  H  Y  E  E  V  I  L  M  M  I  L  N  L  W  V  W  A  I  N  G  R  S  L  Y  V  K  K  D  Q  K  N  I  I  P  S  H  *  N  S  Q  Q  L  K  Q  L  L  S  L  L  K  F  V  I  L  Q  K  M  K  M  S  A  R  H  V  L  K  :  N  I  L  K  K  T  Q  K  *  *  Q  N  A  L  T  T  S  T  W  V  A  Y  M  S  G  W  R  E  V  T  T  V  Q  Y  A  A  R :   *  C  Y  S  T  S  R  H  D  L  C  S  *  K  A  L  V  V  D  E  T  R  R  R  *  G  Q  Q  L  V  N  Q  K  S  *  S  T  *  S  H  C  E  Y  L  C  S  *  M  C  D  H  T  S  V  K  M  K  L  L  F  S  L  F  G  T  F  E  F  I  L  I  I  *  C  N  R  K  Q  F  Q  S  T  S  C  N  L  V  L  I  *  *  V  I  S  P  S  V  *  H  I  V  P  T  F  T  S  *  M  L  A  H  L  S  A  K  I  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0092M23.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41883" stop="42074"/>
                    <exon start="42840" stop="43266"/>
                    <exon start="43568" stop="43677"/>
                    <exon start="46037" stop="46063"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>753</number_coding_nucleotides>
                  <number_encoded_amino_acids>251</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SQEWRIDNDSRGRFLSYEHLFEDIIMGAVCCCLRDECEDFANPNSSIYRNCLCLRCFVQNFLHMYASLFHRGEQHAIASSTQGTTSLSSSASLDNSLSDMYRSPPRPLPYDADPRYFRLQRDGLVSRREKGSSHSHEETEPLRRSDIDDDSESLGMGNKWKESVCEEGSKEYNSKSLKFSTAKTTTEFTQICYSSEDEDVCPTCLEEYTEENPKIMTKCSHHFHLGCIYEWMERSDNCPVCGKVMLFNESP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="43567" e_stop="43677"/>
            <exon e_start="46037" e_stop="46388"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="43567" e_stop="43677" e_length="111"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="43678" i_stop="46036" i_length="2359"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="46037" e_stop="46388" e_length="352"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43567" stop="43677"/>
              <exon start="46037" stop="46371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301111" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43595" stop="43677"/>
              <exon start="46037" stop="46388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E595917" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATATACTGAAGAAAACCCAAAAATAATGACAAAATGCTCTCACCACTTCCACTTGGGTTGCATATATGAGTGGATGGAGAGAAGTGACAACTGTCCAGTATGCGGCAAG : GTGATGCTATTCAACGAGTCGCCATGATCTTTGCTCTTAAAAAGCTTTAGTCGTGGATGAAACCAGAAGGAGATAAGGGCAACAACTAGTAAACCAGAAAAGCTAATCAACGTAAAGTCATTGTGAATATCTGTGCAGCTAAATGTGTGACCATACATCAGTAAAAATGAAATTACTGTTCTCTCTGTTTGGAACTTTCGAGTTCATATTGATCATTTGATGCAACAGAAAACAGTTTCAAAGTACATCATGTAATCTTGTTTTGATTTGATGAGTGATTTCTCCCAGTGTATAGCACATTGTTCCTACTTTCACAAGTTGAATGTTGGCACATTTGTCTGCCAAAATCACT</gDNA_template>
            <first_frame> E  Y  T  E  E  N  P  K  I  M  T  K  C  S  H  H  F  H  L  G  C  I  Y  E  W  M  E  R  S  D  N  C  P  V  C  G  K  :  V  M  L  F  N  E  S  P  *  S  L  L  L  K  S  F  S  R  G  *  N  Q  K  E  I  R  A  T  T  S  K  P  E  K  L  I  N  V  K  S  L  *  I  S  V  Q  L  N  V  *  P  Y  I  S  K  N  E  I  T  V  L  S  V  W  N  F  R  V  H  I  D  H  L  M  Q  Q  K  T  V  S  K  Y  I  M  *  S  C  F  D  L  M  S  D  F  S  Q  C  I  A  H  C  S  Y  F  H  K  L  N  V  G  T  F  V  C  Q  N  H  </first_frame>
            <second_frame>  N  I  L  K  K  T  Q  K  *  *  Q  N  A  L  T  T  S  T  W  V  A  Y  M  S  G  W  R  E  V  T  T  V  Q  Y  A  A  R :   *  C  Y  S  T  S  R  H  D  L  C  S  *  K  A  L  V  V  D  E  T  R  R  R  *  G  Q  Q  L  V  N  Q  K  S  *  S  T  *  S  H  C  E  Y  L  C  S  *  M  C  D  H  T  S  V  K  M  K  L  L  F  S  L  F  G  T  F  E  F  I  L  I  I  *  C  N  R  K  Q  F  Q  S  T  S  C  N  L  V  L  I  *  *  V  I  S  P  S  V  *  H  I  V  P  T  F  T  S  *  M  L  A  H  L  S  A  K  I  T </second_frame>
            <third_frame>   I  Y  *  R  K  P  K  N  N  D  K  M  L  S  P  L  P  L  G  L  H  I  *  V  D  G  E  K  *  Q  L  S  S  M  R  Q   : G  D  A  I  Q  R  V  A  M  I  F  A  L  K  K  L  *  S  W  M  K  P  E  G  D  K  G  N  N  *  *  T  R  K  A  N  Q  R  K  V  I  V  N  I  C  A  A  K  C  V  T  I  H  Q  *  K  *  N  Y  C  S  L  C  L  E  L  S  S  S  Y  *  S  F  D  A  T  E  N  S  F  K  V  H  H  V  I  L  F  *  F  D  E  *  F  L  P  V  Y  S  T  L  F  L  L  S  Q  V  E  C  W  H  I  C  L  P  K  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLe0092M23.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="42767" e_stop="42768"/>
            <exon e_start="42840" e_stop="43266"/>
            <exon e_start="43568" e_stop="43677"/>
            <exon e_start="46037" e_stop="46310"/>
            <exon e_start="46624" e_stop="46632"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.948" acc_prob="0.753" e_score="0.984"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.136" e_score="0.850"/>
          <exon-only e_score="0.556"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42767" e_stop="42768" e_length="2"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.986">
            <gDNA_intron_boundary i_start="42769" i_stop="42839" i_length="71"/>
          </intron>
          <exon e_serial="2" e_score="0.984">
            <gDNA_exon_boundary e_start="42840" e_stop="43266" e_length="427"/>
          </exon>
          <intron i_serial="2" don_prob="0.948" acc_prob="0.753">
            <gDNA_intron_boundary i_start="43267" i_stop="43567" i_length="301"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="43568" e_stop="43677" e_length="110"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="43678" i_stop="46036" i_length="2359"/>
          </intron>
          <exon e_serial="4" e_score="0.850">
            <gDNA_exon_boundary e_start="46037" e_stop="46310" e_length="274"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.136">
            <gDNA_intron_boundary i_start="46311" i_stop="46623" i_length="313"/>
          </intron>
          <exon e_serial="5" e_score="0.556">
            <gDNA_exon_boundary e_start="46624" e_stop="46632" e_length="9"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42767" stop="42768"/>
              <exon start="42840" stop="43266"/>
              <exon start="43568" stop="43677"/>
              <exon start="46037" stop="46310"/>
              <exon start="46624" stop="46632"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42990" stop="43266"/>
              <exon start="43568" stop="43677"/>
              <exon start="46037" stop="46156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336850" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="6" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TG : TATGCATCATTGTTTCATAGAGGAGAACAACATGCCATTGCTTCATCCACTCAAGGTACAACATCTTTGAGCTCCTCAGCATCCCTTGATAACTCACTATCTGATATGTACCGCTCTCCTCCAAGACCACTTCCTTACGATGCTGATCCAAGATACTTCCGCTTGCAACGTGATGGGCTAGTCTCAAGAAGGGAGAAAGGCTCAAGTCATTCACATGAGGAAACTGAACCACTACGAAGAAGTGATATTGATGATGATTCTGAATCTTTGGGTATGGGCAATAAATGGAAGGAGTCTGTATGTGAAGAAGGATCAAAAGAATATAATTCCAAGTCATTGAAATTCTCAACAGCTAAAACAACTACTGAGTTTACTCAAATTTGTTATTCTTCAGAAGATGAAGATGTCTGCCCGACATGTCTTGAAG : AATATACTGAAGAAAACCCAAAAATAATGACAAAATGCTCTCACCACTTCCACTTGGGTTGCATATATGAGTGGATGGAGAGAAGTGACAACTGTCCAGTATGCGGCAAG : GTGATGCTATTCAACGAGTCGCCATGATCTTTGCTCTTAAAAAGCTTTAGTCGTGGATGAAACCAGAAGGAGATAAGGGCAACAACTAGTAAACCAGAAAAGCTAATCAACGTAAAGTCATTGTGAATATCTGTGCAGCTAAATGTGTGACCATACATCAGTAAAAATGAAATTACTGTTCTCTCTGTTTGGAACTTTCGAGTTCATATTGATCATTTGATGCAACAGAAAACAGTTTCAAAGTACATCATGTAATCTTGTTTTGATTTGATGA : AAGTAATTA</gDNA_template>
            <first_frame> C :   M  H  H  C  F  I  E  E  N  N  M  P  L  L  H  P  L  K  V  Q  H  L  *  A  P  Q  H  P  L  I  T  H  Y  L  I  C  T  A  L  L  Q  D  H  F  L  T  M  L  I  Q  D  T  S  A  C  N  V  M  G  *  S  Q  E  G  R  K  A  Q  V  I  H  M  R  K  L  N  H  Y  E  E  V  I  L  M  M  I  L  N  L  W  V  W  A  I  N  G  R  S  L  Y  V  K  K  D  Q  K  N  I  I  P  S  H  *  N  S  Q  Q  L  K  Q  L  L  S  L  L  K  F  V  I  L  Q  K  M  K  M  S  A  R  H  V  L  K  :  N  I  L  K  K  T  Q  K  *  *  Q  N  A  L  T  T  S  T  W  V  A  Y  M  S  G  W  R  E  V  T  T  V  Q  Y  A  A  R :   *  C  Y  S  T  S  R  H  D  L  C  S  *  K  A  L  V  V  D  E  T  R  R  R  *  G  Q  Q  L  V  N  Q  K  S  *  S  T  *  S  H  C  E  Y  L  C  S  *  M  C  D  H  T  S  V  K  M  K  L  L  F  S  L  F  G  T  F  E  F  I  L  I  I  *  C  N  R  K  Q  F  Q  S  T  S  C  N  L  V  L  I  *  *  :  K  *  L </first_frame>
            <second_frame>   : V  C  I  I  V  S  *  R  R  T  T  C  H  C  F  I  H  S  R  Y  N  I  F  E  L  L  S  I  P  *  *  L  T  I  *  Y  V  P  L  S  S  K  T  T  S  L  R  C  *  S  K  I  L  P  L  A  T  *  W  A  S  L  K  K  G  E  R  L  K  S  F  T  *  G  N  *  T  T  T  K  K  *  Y  *  *  *  F  *  I  F  G  Y  G  Q  *  M  E  G  V  C  M  *  R  R  I  K  R  I  *  F  Q  V  I  E  I  L  N  S  *  N  N  Y  *  V  Y  S  N  L  L  F  F  R  R  *  R  C  L  P  D  M  S  *  R :   I  Y  *  R  K  P  K  N  N  D  K  M  L  S  P  L  P  L  G  L  H  I  *  V  D  G  E  K  *  Q  L  S  S  M  R  Q   : G  D  A  I  Q  R  V  A  M  I  F  A  L  K  K  L  *  S  W  M  K  P  E  G  D  K  G  N  N  *  *  T  R  K  A  N  Q  R  K  V  I  V  N  I  C  A  A  K  C  V  T  I  H  Q  *  K  *  N  Y  C  S  L  C  L  E  L  S  S  S  Y  *  S  F  D  A  T  E  N  S  F  K  V  H  H  V  I  L  F  *  F  D  E :   S  N   </second_frame>
            <third_frame>   :  Y  A  S  L  F  H  R  G  E  Q  H  A  I  A  S  S  T  Q  G  T  T  S  L  S  S  S  A  S  L  D  N  S  L  S  D  M  Y  R  S  P  P  R  P  L  P  Y  D  A  D  P  R  Y  F  R  L  Q  R  D  G  L  V  S  R  R  E  K  G  S  S  H  S  H  E  E  T  E  P  L  R  R  S  D  I  D  D  D  S  E  S  L  G  M  G  N  K  W  K  E  S  V  C  E  E  G  S  K  E  Y  N  S  K  S  L  K  F  S  T  A  K  T  T  T  E  F  T  Q  I  C  Y  S  S  E  D  E  D  V  C  P  T  C  L  E   : E  Y  T  E  E  N  P  K  I  M  T  K  C  S  H  H  F  H  L  G  C  I  Y  E  W  M  E  R  S  D  N  C  P  V  C  G  K  :  V  M  L  F  N  E  S  P  *  S  L  L  L  K  S  F  S  R  G  *  N  Q  K  E  I  R  A  T  T  S  K  P  E  K  L  I  N  V  K  S  L  *  I  S  V  Q  L  N  V  *  P  Y  I  S  K  N  E  I  T  V  L  S  V  W  N  F  R  V  H  I  D  H  L  M  Q  Q  K  T  V  S  K  Y  I  M  *  S  C  F  D  L  M   : K  V  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0092M23.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42840" stop="43266"/>
                    <exon start="43568" stop="43677"/>
                    <exon start="46037" stop="46063"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>561</number_coding_nucleotides>
                  <number_encoded_amino_acids>187</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YASLFHRGEQHAIASSTQGTTSLSSSASLDNSLSDMYRSPPRPLPYDADPRYFRLQRDGLVSRREKGSSHSHEETEPLRRSDIDDDSESLGMGNKWKESVCEEGSKEYNSKSLKFSTAKTTTEFTQICYSSEDEDVCPTCLEEYTEENPKIMTKCSHHFHLGCIYEWMERSDNCPVCGKVMLFNESP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="41883" PGL_stop="41082"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41883" e_stop="41082"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="41883" e_stop="41082" e_length="802"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41883" stop="41082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542546" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTAGATGGTTATGGATGCAAAACTTGTAAGAATATAACTTACGGAAAATGCAATTGGGCACCCTCTCTCTTCAGGAAACCCTGAATGAGTTGATGCCCTTCATGACCAAGACCTTCAGAAAAAATTTCAAAAACTGTTGTGTATCACCTGTACAAGTAAAGAACAACTATCATATATGCATTGATGGAGAAATACATGGATGGTCTACCTCGAGTGACACAAGAAAATTACAGCTTCCGAAGAATGAAATAAATAAGCTTACAGTTTAAATTTGATATGTGAGCAAGCAAAATCACATTAAATTCAAATTTATAAACAGCTTCTTTGGCATAATCCAGCTGCCTAACACTCAACAAATTGCAATAAAATAAAAAAACATAAATAGATGGACACTATAAATTTGCAGGGAATTATTCTTAATTCCTAATCTTAAACACCACTTGTGAGAACTTAATTCTCAAATTGTTATCATCATCTTAATTTCTTTAATAAGAAGCAAAGGGAACTCTCATACAACAGTGTTAAAGACACAGCTAAACCGAAAACAAGAAAAAATTAAAACAAAAAATGATCAACAAAACAACACCAACAGTGATCAAGAATCAAGAAAATCAAGATTTCTACAATTCAAATCAAGAAATTGCATTATCGATCCCTAAAAAACAGAACTTTACCGTGAAAATCTCTGCATCAACCGATTCCGATGAAACCCATTTCAGTTCATAACAGTTTACAATCGATTAAAGCTCCAATCAGTAGGAGATAGATAAAAGTGAGCGTAAAATACAGTGATAAAAAAAA</gDNA_template>
            <first_frame> I  R  W  L  W  M  Q  N  L  *  E  Y  N  L  R  K  M  Q  L  G  T  L  S  L  Q  E  T  L  N  E  L  M  P  F  M  T  K  T  F  R  K  N  F  K  N  C  C  V  S  P  V  Q  V  K  N  N  Y  H  I  C  I  D  G  E  I  H  G  W  S  T  S  S  D  T  R  K  L  Q  L  P  K  N  E  I  N  K  L  T  V  *  I  *  Y  V  S  K  Q  N  H  I  K  F  K  F  I  N  S  F  F  G  I  I  Q  L  P  N  T  Q  Q  I  A  I  K  *  K  N  I  N  R  W  T  L  *  I  C  R  E  L  F  L  I  P  N  L  K  H  H  L  *  E  L  N  S  Q  I  V  I  I  I  L  I  S  L  I  R  S  K  G  N  S  H  T  T  V  L  K  T  Q  L  N  R  K  Q  E  K  I  K  T  K  N  D  Q  Q  N  N  T  N  S  D  Q  E  S  R  K  S  R  F  L  Q  F  K  S  R  N  C  I  I  D  P  *  K  T  E  L  Y  R  E  N  L  C  I  N  R  F  R  *  N  P  F  Q  F  I  T  V  Y  N  R  L  K  L  Q  S  V  G  D  R  *  K  *  A  *  N  T  V  I  K  K  </first_frame>
            <second_frame>  L  D  G  Y  G  C  K  T  C  K  N  I  T  Y  G  K  C  N  W  A  P  S  L  F  R  K  P  *  M  S  *  C  P  S  *  P  R  P  S  E  K  I  S  K  T  V  V  Y  H  L  Y  K  *  R  T  T  I  I  Y  A  L  M  E  K  Y  M  D  G  L  P  R  V  T  Q  E  N  Y  S  F  R  R  M  K  *  I  S  L  Q  F  K  F  D  M  *  A  S  K  I  T  L  N  S  N  L  *  T  A  S  L  A  *  S  S  C  L  T  L  N  K  L  Q  *  N  K  K  T  *  I  D  G  H  Y  K  F  A  G  N  Y  S  *  F  L  I  L  N  T  T  C  E  N  L  I  L  K  L  L  S  S  S  *  F  L  *  *  E  A  K  G  T  L  I  Q  Q  C  *  R  H  S  *  T  E  N  K  K  K  L  K  Q  K  M  I  N  K  T  T  P  T  V  I  K  N  Q  E  N  Q  D  F  Y  N  S  N  Q  E  I  A  L  S  I  P  K  K  Q  N  F  T  V  K  I  S  A  S  T  D  S  D  E  T  H  F  S  S  *  Q  F  T  I  D  *  S  S  N  Q  *  E  I  D  K  S  E  R  K  I  Q  *  *  K  K </second_frame>
            <third_frame>   *  M  V  M  D  A  K  L  V  R  I  *  L  T  E  N  A  I  G  H  P  L  S  S  G  N  P  E  *  V  D  A  L  H  D  Q  D  L  Q  K  K  F  Q  K  L  L  C  I  T  C  T  S  K  E  Q  L  S  Y  M  H  *  W  R  N  T  W  M  V  Y  L  E  *  H  K  K  I  T  A  S  E  E  *  N  K  *  A  Y  S  L  N  L  I  C  E  Q  A  K  S  H  *  I  Q  I  Y  K  Q  L  L  W  H  N  P  A  A  *  H  S  T  N  C  N  K  I  K  K  H  K  *  M  D  T  I  N  L  Q  G  I  I  L  N  S  *  S  *  T  P  L  V  R  T  *  F  S  N  C  Y  H  H  L  N  F  F  N  K  K  Q  R  E  L  S  Y  N  S  V  K  D  T  A  K  P  K  T  R  K  N  *  N  K  K  *  S  T  K  Q  H  Q  Q  *  S  R  I  K  K  I  K  I  S  T  I  Q  I  K  K  L  H  Y  R  S  L  K  N  R  T  L  P  *  K  S  L  H  Q  P  I  P  M  K  P  I  S  V  H  N  S  L  Q  S  I  K  A  P  I  S  R  R  *  I  K  V  S  V  K  Y  S  D  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0092M23.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41853" stop="41614"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EYNLRKMQLGTLSLQETLNELMPFMTKTFRKNFKNCCVSPVQVKNNYHICIDGEIHGWSTSSDTRKLQLPKNEINKLTV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0092M23.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41436" stop="41224"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ELNSQIVIIILISLIRSKGNSHTTVLKTQLNRKQEKIKTKNDQQNNTNSDQESRKSRFLQFKSRNCIIDP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="49351" PGL_stop="46403"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49351" e_stop="49164"/>
            <exon e_start="48495" e_stop="48348"/>
            <exon e_start="48265" e_stop="48146"/>
            <exon e_start="48045" e_stop="48002"/>
            <exon e_start="47916" e_stop="47791"/>
            <exon e_start="47469" e_stop="47385"/>
            <exon e_start="47010" e_stop="46954"/>
            <exon e_start="46861" e_stop="46556"/>
            <exon e_start="46409" e_stop="46403"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.891" e_score="1.000"/>
          <exon-intron don_prob="0.361" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.932" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.871" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.857" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.959" e_score="1.000"/>
          <exon-only e_score="0.714"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="49351" e_stop="49164" e_length="188"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.891">
            <gDNA_intron_boundary i_start="49163" i_stop="48496" i_length="668"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="48495" e_stop="48348" e_length="148"/>
          </exon>
          <intron i_serial="2" don_prob="0.361" acc_prob="0.998">
            <gDNA_intron_boundary i_start="48347" i_stop="48266" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="48265" e_stop="48146" e_length="120"/>
          </exon>
          <intron i_serial="3" don_prob="0.932" acc_prob="0.990">
            <gDNA_intron_boundary i_start="48145" i_stop="48046" i_length="100"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="48045" e_stop="48002" e_length="44"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="48001" i_stop="47917" i_length="85"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="47916" e_stop="47791" e_length="126"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.871">
            <gDNA_intron_boundary i_start="47790" i_stop="47470" i_length="321"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="47469" e_stop="47385" e_length="85"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="47384" i_stop="47011" i_length="374"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="47010" e_stop="46954" e_length="57"/>
          </exon>
          <intron i_serial="7" don_prob="0.952" acc_prob="0.857">
            <gDNA_intron_boundary i_start="46953" i_stop="46862" i_length="92"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="46861" e_stop="46556" e_length="306"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.959">
            <gDNA_intron_boundary i_start="46555" i_stop="46410" i_length="146"/>
          </intron>
          <exon e_serial="9" e_score="0.714">
            <gDNA_exon_boundary e_start="46409" e_stop="46403" e_length="7"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49351" stop="49164"/>
              <exon start="48495" stop="48348"/>
              <exon start="48265" stop="48152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49351" stop="49164"/>
              <exon start="48495" stop="48348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49346" stop="49164"/>
              <exon start="48495" stop="48348"/>
              <exon start="48265" stop="48146"/>
              <exon start="48045" stop="48002"/>
              <exon start="47916" stop="47791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49314" stop="49164"/>
              <exon start="48495" stop="48348"/>
              <exon start="48265" stop="48146"/>
              <exon start="48045" stop="48002"/>
              <exon start="47916" stop="47791"/>
              <exon start="47469" stop="47385"/>
              <exon start="47010" stop="46954"/>
              <exon start="46861" stop="46785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49313" stop="49164"/>
              <exon start="48495" stop="48348"/>
              <exon start="48265" stop="48153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49299" stop="49164"/>
              <exon start="48495" stop="48348"/>
              <exon start="48265" stop="48146"/>
              <exon start="48045" stop="48002"/>
              <exon start="47916" stop="47791"/>
              <exon start="47469" stop="47427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337771" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49281" stop="49164"/>
              <exon start="48495" stop="48348"/>
              <exon start="48265" stop="48146"/>
              <exon start="48045" stop="48002"/>
              <exon start="47916" stop="47791"/>
              <exon start="47469" stop="47385"/>
              <exon start="47010" stop="46954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49252" stop="49164"/>
              <exon start="48495" stop="48348"/>
              <exon start="48265" stop="48146"/>
              <exon start="48045" stop="48002"/>
              <exon start="47916" stop="47791"/>
              <exon start="47469" stop="47385"/>
              <exon start="47010" stop="46958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49252" stop="49164"/>
              <exon start="48495" stop="48348"/>
              <exon start="48265" stop="48146"/>
              <exon start="48045" stop="48034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49239" stop="49164"/>
              <exon start="48495" stop="48348"/>
              <exon start="48265" stop="48146"/>
              <exon start="48045" stop="48002"/>
              <exon start="47916" stop="47791"/>
              <exon start="47469" stop="47393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205609" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49210" stop="49164"/>
              <exon start="48495" stop="48348"/>
              <exon start="48265" stop="48146"/>
              <exon start="48045" stop="48002"/>
              <exon start="47916" stop="47791"/>
              <exon start="47469" stop="47385"/>
              <exon start="47010" stop="46954"/>
              <exon start="46861" stop="46781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619425" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49188" stop="49164"/>
              <exon start="48495" stop="48348"/>
              <exon start="48265" stop="48146"/>
              <exon start="48045" stop="48002"/>
              <exon start="47916" stop="47791"/>
              <exon start="47469" stop="47385"/>
              <exon start="47010" stop="46954"/>
              <exon start="46861" stop="46797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373685" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49188" stop="49164"/>
              <exon start="48495" stop="48348"/>
              <exon start="48265" stop="48146"/>
              <exon start="48045" stop="48002"/>
              <exon start="47916" stop="47791"/>
              <exon start="47469" stop="47432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48485" stop="48348"/>
              <exon start="48265" stop="48146"/>
              <exon start="48045" stop="48002"/>
              <exon start="47916" stop="47791"/>
              <exon start="47469" stop="47385"/>
              <exon start="47010" stop="46954"/>
              <exon start="46861" stop="46689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546407" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48484" stop="48348"/>
              <exon start="48265" stop="48146"/>
              <exon start="48045" stop="48002"/>
              <exon start="47916" stop="47827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48460" stop="48348"/>
              <exon start="48265" stop="48146"/>
              <exon start="48045" stop="48002"/>
              <exon start="47916" stop="47791"/>
              <exon start="47469" stop="47385"/>
              <exon start="47010" stop="46954"/>
              <exon start="46861" stop="46664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48403" stop="48348"/>
              <exon start="48265" stop="48146"/>
              <exon start="48045" stop="48002"/>
              <exon start="47916" stop="47791"/>
              <exon start="47469" stop="47385"/>
              <exon start="47010" stop="46954"/>
              <exon start="46861" stop="46556"/>
              <exon start="46409" stop="46403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48354" stop="48348"/>
              <exon start="48265" stop="48146"/>
              <exon start="48045" stop="48002"/>
              <exon start="47916" stop="47791"/>
              <exon start="47469" stop="47385"/>
              <exon start="47010" stop="46954"/>
              <exon start="46861" stop="46679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48211" stop="48146"/>
              <exon start="48045" stop="48002"/>
              <exon start="47916" stop="47791"/>
              <exon start="47469" stop="47385"/>
              <exon start="47010" stop="46954"/>
              <exon start="46861" stop="46757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276225" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48179" stop="48146"/>
              <exon start="48045" stop="48002"/>
              <exon start="47916" stop="47791"/>
              <exon start="47469" stop="47385"/>
              <exon start="47010" stop="46954"/>
              <exon start="46861" stop="46655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48179" stop="48146"/>
              <exon start="48045" stop="48002"/>
              <exon start="47916" stop="47791"/>
              <exon start="47469" stop="47385"/>
              <exon start="47010" stop="46954"/>
              <exon start="46861" stop="46757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48179" stop="48146"/>
              <exon start="48045" stop="48002"/>
              <exon start="47916" stop="47791"/>
              <exon start="47469" stop="47385"/>
              <exon start="47010" stop="46954"/>
              <exon start="46861" stop="46781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257796" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47469" stop="47385"/>
              <exon start="47010" stop="46954"/>
              <exon start="46861" stop="46556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47411" stop="47385"/>
              <exon start="47010" stop="46954"/>
              <exon start="46861" stop="46561"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46997" stop="46954"/>
              <exon start="46861" stop="46556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46986" stop="46954"/>
              <exon start="46861" stop="46556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221161" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAAGTTGTCCTAAGTCCATTTTCACATCACACCAAACTCCTAAATTTTTACCCTTTTTTCCTAAAAAAAATTTGTTCCTATTCAAGATTTGATTTCAGAAGAAGCAAATTCTGGTTAAGGCCCCAAAAGAGTCTTTCCTAATTTATATGCTTCCATTGAATCTCCGAAAATTCCTAATTTCTTCGAG : GTTCCTGCATCGATTAATGGCCACCAACTGTGGAAAGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTCATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTTTGAG : ATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATGTCGGAG : GTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTAC : GGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAG : AGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAG : GTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTG : CTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGTCACAGCATAGTTCATCTCCAACTTCATCTAAGAGTCTTTCTACCTCTTGTGAAGTTGTATGCCCACTGGATAGATACCGGTGACTCTTCTTAAAGTGAAATATTCGATCAGTATTATATATATGTGCTCGTGGCGACTTAATTGTACTGCAGTAATTACTTCTGTTTTAATTTCCATTGAAGGTTGAGAGATTTATGTGACATAATTGAAATGATATTTGCATCGTATA : ATATAAA</gDNA_template>
            <first_frame> L  S  C  P  K  S  I  F  T  S  H  Q  T  P  K  F  L  P  F  F  P  K  K  N  L  F  L  F  K  I  *  F  Q  K  K  Q  I  L  V  K  A  P  K  E  S  F  L  I  Y  M  L  P  L  N  L  R  K  F  L  I  S  S  R :   F  L  H  R  L  M  A  T  N  C  G  K  K  F  I  R  I  D  I  S  S  D  T  V  C  P  W  C  F  V  G  K  K  N  L  H  K  A  I  A  L  T  S  D  Q  Y  D  F  E  :  I  K  W  H  P  F  L  L  N  P  S  A  P  K  E  G  I  N  K  K  D  Y  Y  R  N  K  F  G  S  R  S  E  Q  M  M  S  R  M  S  E  :  V  F  K  G  L  G  M  E  Y  N  M  S  G  L  T :   G  S  S  L  D  S  H  R  L  L  Y  F  A  G  Q  Q  G  L  D  K  Q  N  N  L  A  E  E  L  F  L  G  Y  F  T  Q  G  R  Y  I  G  D  R :   E  F  L  I  E  A  A  R  K  V  G  V  E  G  A  A  D  F  L  E  D  P  N  N  G  L  K  E  :  V  N  E  E  L  Q  Q  H  S  S  N  I  S  G  V  P  H  F  V  :  L  N  G  K  Y  Q  L  S  G  G  Q  P  P  E  S  F  I  R  A  F  Q  A  A  S  N  V  T  A  *  F  I  S  N  F  I  *  E  S  F  Y  L  L  *  S  C  M  P  T  G  *  I  P  V  T  L  L  K  V  K  Y  S  I  S  I  I  Y  M  C  S  W  R  L  N  C  T  A  V  I  T  S  V  L  I  S  I  E  G  *  E  I  Y  V  T  *  L  K  *  Y  L  H  R  I  :  I  *  </first_frame>
            <second_frame>  *  V  V  L  S  P  F  S  H  H  T  K  L  L  N  F  Y  P  F  F  L  K  K  I  C  S  Y  S  R  F  D  F  R  R  S  K  F  W  L  R  P  Q  K  S  L  S  *  F  I  C  F  H  *  I  S  E  N  S  *  F  L  R   : G  S  C  I  D  *  W  P  P  T  V  E  R  S  L  S  E  L  I  S  V  R  I  L  C  A  P  G  A  L  W  G  K  R  T  F  I  K  L  *  R  *  P  V  I  S  M  I  L  R :   L  S  G  I  R  F  F  S  T  L  L  H  L  K  K  G  L  T  R  K  I  T  T  E  I  S  L  D  L  A  L  N  K  *  C  Q  E  C  R  R :   F  L  R  A  L  G  W  N  T  T  C  Q  D  L   : R  E  V  V  W  T  A  T  G  Y  Y  I  S  Q  D  N  R  G  L  T  S  K  I  I  L  L  R  S  F  F  S  A  I  S  H  R  E  G  I  *  V  T   : E  N  F  L  L  K  L  Q  E  K  L  V  W  K  E  Q  L  T  S  L  K  I  P  T  M  G  *  R  R :   *  M  K  S  F  S  N  T  H  Q  I  Y  Q  A  S  H  I  L  C :   *  M  A  S  T  S  *  A  V  A  N  L  Q  R  V  S  Y  E  L  F  K  L  L  Q  M  S  Q  H  S  S  S  P  T  S  S  K  S  L  S  T  S  C  E  V  V  C  P  L  D  R  Y  R  *  L  F  L  K  *  N  I  R  S  V  L  Y  I  C  A  R  G  D  L  I  V  L  Q  *  L  L  L  F  *  F  P  L  K  V  E  R  F  M  *  H  N  *  N  D  I  C  I  V  * :   Y  K </second_frame>
            <third_frame>   K  L  S  *  V  H  F  H  I  T  P  N  S  *  I  F  T  L  F  S  *  K  K  F  V  P  I  Q  D  L  I  S  E  E  A  N  S  G  *  G  P  K  R  V  F  P  N  L  Y  A  S  I  E  S  P  K  I  P  N  F  F  E  :  V  P  A  S  I  N  G  H  Q  L  W  K  E  V  Y  P  N  *  Y  Q  F  G  Y  C  V  P  L  V  L  C  G  E  K  E  P  S  *  S  Y  S  V  N  Q  *  S  V  *  F  *   : D  *  V  A  S  V  S  S  Q  P  F  C  T  *  R  R  D  *  Q  E  R  L  L  Q  K  *  V  W  I  S  L  *  T  N  D  V  K  N  V  G   : G  F  *  G  P  W  D  G  I  Q  H  V  R  T  Y  :  G  K  *  S  G  Q  P  Q  A  T  I  F  R  R  T  T  G  A  *  Q  A  K  *  S  C  *  G  A  F  S  R  L  F  H  T  G  K  V  Y  R  *  Q  :  R  I  S  Y  *  S  C  K  K  S  W  C  G  R  S  S  *  L  P  *  R  S  Q  Q  W  A  K  G   : G  E  *  R  A  S  A  T  L  I  K  Y  I  R  R  P  T  F  C   : A  K  W  Q  V  P  V  E  R  W  P  T  S  R  E  F  H  T  S  F  S  S  C  F  K  C  H  S  I  V  H  L  Q  L  H  L  R  V  F  L  P  L  V  K  L  Y  A  H  W  I  D  T  G  D  S  S  *  S  E  I  F  D  Q  Y  Y  I  Y  V  L  V  A  T  *  L  Y  C  S  N  Y  F  C  F  N  F  H  *  R  L  R  D  L  C  D  I  I  E  M  I  F  A  S  Y   : N  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0092M23.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49258" stop="49164"/>
                    <exon start="48495" stop="48348"/>
                    <exon start="48265" stop="48146"/>
                    <exon start="48045" stop="48002"/>
                    <exon start="47916" stop="47791"/>
                    <exon start="47469" stop="47385"/>
                    <exon start="47010" stop="46954"/>
                    <exon start="46861" stop="46775"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>759</number_coding_nucleotides>
                  <number_encoded_amino_acids>253</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQKKQILVKAPKESFLIYMLPLNLRKFLISSRFLHRLMATNCGKKFIRIDISSDTVCPWCFVGKKNLHKAIALTSDQYDFEIKWHPFLLNPSAPKEGINKKDYYRNKFGSRSEQMMSRMSEVFKGLGMEYNMSGLTGSSLDSHRLLYFAGQQGLDKQNNLAEELFLGYFTQGRYIGDREFLIEAARKVGVEGAADFLEDPNNGLKEVNEELQQHSSNISGVPHFVLNGKYQLSGGQPPESFIRAFQAASNVTA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="49351" e_stop="49164"/>
            <exon e_start="48495" e_stop="48348"/>
            <exon e_start="48265" e_stop="48146"/>
            <exon e_start="48045" e_stop="48002"/>
            <exon e_start="47916" e_stop="47791"/>
            <exon e_start="47469" e_stop="47385"/>
            <exon e_start="47010" e_stop="46954"/>
            <exon e_start="46861" e_stop="46532"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.891" e_score="1.000"/>
          <exon-intron don_prob="0.361" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.932" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.871" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.857" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="49351" e_stop="49164" e_length="188"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.891">
            <gDNA_intron_boundary i_start="49163" i_stop="48496" i_length="668"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="48495" e_stop="48348" e_length="148"/>
          </exon>
          <intron i_serial="2" don_prob="0.361" acc_prob="0.998">
            <gDNA_intron_boundary i_start="48347" i_stop="48266" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="48265" e_stop="48146" e_length="120"/>
          </exon>
          <intron i_serial="3" don_prob="0.932" acc_prob="0.990">
            <gDNA_intron_boundary i_start="48145" i_stop="48046" i_length="100"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="48045" e_stop="48002" e_length="44"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="48001" i_stop="47917" i_length="85"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="47916" e_stop="47791" e_length="126"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.871">
            <gDNA_intron_boundary i_start="47790" i_stop="47470" i_length="321"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="47469" e_stop="47385" e_length="85"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="47384" i_stop="47011" i_length="374"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="47010" e_stop="46954" e_length="57"/>
          </exon>
          <intron i_serial="7" don_prob="0.952" acc_prob="0.857">
            <gDNA_intron_boundary i_start="46953" i_stop="46862" i_length="92"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="46861" e_stop="46532" e_length="330"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49351" stop="49164"/>
              <exon start="48495" stop="48348"/>
              <exon start="48265" stop="48152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49351" stop="49164"/>
              <exon start="48495" stop="48348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49346" stop="49164"/>
              <exon start="48495" stop="48348"/>
              <exon start="48265" stop="48146"/>
              <exon start="48045" stop="48002"/>
              <exon start="47916" stop="47791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49314" stop="49164"/>
              <exon start="48495" stop="48348"/>
              <exon start="48265" stop="48146"/>
              <exon start="48045" stop="48002"/>
              <exon start="47916" stop="47791"/>
              <exon start="47469" stop="47385"/>
              <exon start="47010" stop="46954"/>
              <exon start="46861" stop="46785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49313" stop="49164"/>
              <exon start="48495" stop="48348"/>
              <exon start="48265" stop="48153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49299" stop="49164"/>
              <exon start="48495" stop="48348"/>
              <exon start="48265" stop="48146"/>
              <exon start="48045" stop="48002"/>
              <exon start="47916" stop="47791"/>
              <exon start="47469" stop="47427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337771" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49281" stop="49164"/>
              <exon start="48495" stop="48348"/>
              <exon start="48265" stop="48146"/>
              <exon start="48045" stop="48002"/>
              <exon start="47916" stop="47791"/>
              <exon start="47469" stop="47385"/>
              <exon start="47010" stop="46954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49252" stop="49164"/>
              <exon start="48495" stop="48348"/>
              <exon start="48265" stop="48146"/>
              <exon start="48045" stop="48002"/>
              <exon start="47916" stop="47791"/>
              <exon start="47469" stop="47385"/>
              <exon start="47010" stop="46958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49252" stop="49164"/>
              <exon start="48495" stop="48348"/>
              <exon start="48265" stop="48146"/>
              <exon start="48045" stop="48034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49239" stop="49164"/>
              <exon start="48495" stop="48348"/>
              <exon start="48265" stop="48146"/>
              <exon start="48045" stop="48002"/>
              <exon start="47916" stop="47791"/>
              <exon start="47469" stop="47393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205609" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49210" stop="49164"/>
              <exon start="48495" stop="48348"/>
              <exon start="48265" stop="48146"/>
              <exon start="48045" stop="48002"/>
              <exon start="47916" stop="47791"/>
              <exon start="47469" stop="47385"/>
              <exon start="47010" stop="46954"/>
              <exon start="46861" stop="46781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619425" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49188" stop="49164"/>
              <exon start="48495" stop="48348"/>
              <exon start="48265" stop="48146"/>
              <exon start="48045" stop="48002"/>
              <exon start="47916" stop="47791"/>
              <exon start="47469" stop="47385"/>
              <exon start="47010" stop="46954"/>
              <exon start="46861" stop="46797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373685" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49188" stop="49164"/>
              <exon start="48495" stop="48348"/>
              <exon start="48265" stop="48146"/>
              <exon start="48045" stop="48002"/>
              <exon start="47916" stop="47791"/>
              <exon start="47469" stop="47432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48485" stop="48348"/>
              <exon start="48265" stop="48146"/>
              <exon start="48045" stop="48002"/>
              <exon start="47916" stop="47791"/>
              <exon start="47469" stop="47385"/>
              <exon start="47010" stop="46954"/>
              <exon start="46861" stop="46689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546407" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48484" stop="48348"/>
              <exon start="48265" stop="48146"/>
              <exon start="48045" stop="48002"/>
              <exon start="47916" stop="47827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48460" stop="48348"/>
              <exon start="48265" stop="48146"/>
              <exon start="48045" stop="48002"/>
              <exon start="47916" stop="47791"/>
              <exon start="47469" stop="47385"/>
              <exon start="47010" stop="46954"/>
              <exon start="46861" stop="46664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48363" stop="48348"/>
              <exon start="48265" stop="48146"/>
              <exon start="48045" stop="48002"/>
              <exon start="47916" stop="47791"/>
              <exon start="47469" stop="47385"/>
              <exon start="47010" stop="46954"/>
              <exon start="46861" stop="46532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48354" stop="48348"/>
              <exon start="48265" stop="48146"/>
              <exon start="48045" stop="48002"/>
              <exon start="47916" stop="47791"/>
              <exon start="47469" stop="47385"/>
              <exon start="47010" stop="46954"/>
              <exon start="46861" stop="46679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48211" stop="48146"/>
              <exon start="48045" stop="48002"/>
              <exon start="47916" stop="47791"/>
              <exon start="47469" stop="47385"/>
              <exon start="47010" stop="46954"/>
              <exon start="46861" stop="46757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276225" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48179" stop="48146"/>
              <exon start="48045" stop="48002"/>
              <exon start="47916" stop="47791"/>
              <exon start="47469" stop="47385"/>
              <exon start="47010" stop="46954"/>
              <exon start="46861" stop="46655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48179" stop="48146"/>
              <exon start="48045" stop="48002"/>
              <exon start="47916" stop="47791"/>
              <exon start="47469" stop="47385"/>
              <exon start="47010" stop="46954"/>
              <exon start="46861" stop="46757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48179" stop="48146"/>
              <exon start="48045" stop="48002"/>
              <exon start="47916" stop="47791"/>
              <exon start="47469" stop="47385"/>
              <exon start="47010" stop="46954"/>
              <exon start="46861" stop="46781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257796" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47469" stop="47385"/>
              <exon start="47010" stop="46954"/>
              <exon start="46861" stop="46556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47411" stop="47385"/>
              <exon start="47010" stop="46954"/>
              <exon start="46861" stop="46561"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46997" stop="46954"/>
              <exon start="46861" stop="46556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46986" stop="46954"/>
              <exon start="46861" stop="46556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221161" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAAGTTGTCCTAAGTCCATTTTCACATCACACCAAACTCCTAAATTTTTACCCTTTTTTCCTAAAAAAAATTTGTTCCTATTCAAGATTTGATTTCAGAAGAAGCAAATTCTGGTTAAGGCCCCAAAAGAGTCTTTCCTAATTTATATGCTTCCATTGAATCTCCGAAAATTCCTAATTTCTTCGAG : GTTCCTGCATCGATTAATGGCCACCAACTGTGGAAAGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTCATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTTTGAG : ATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATGTCGGAG : GTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTAC : GGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAG : AGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAG : GTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTG : CTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGTCACAGCATAGTTCATCTCCAACTTCATCTAAGAGTCTTTCTACCTCTTGTGAAGTTGTATGCCCACTGGATAGATACCGGTGACTCTTCTTAAAGTGAAATATTCGATCAGTATTATATATATGTGCTCGTGGCGACTTAATTGTACTGCAGTAATTACTTCTGTTTTAATTTCCATTGAAGGTTGAGAGATTTATGTGACATAATTGAAATGATATTTGCATCGTATAGTTGTTTTTCATAGTACATTATAT</gDNA_template>
            <first_frame> L  S  C  P  K  S  I  F  T  S  H  Q  T  P  K  F  L  P  F  F  P  K  K  N  L  F  L  F  K  I  *  F  Q  K  K  Q  I  L  V  K  A  P  K  E  S  F  L  I  Y  M  L  P  L  N  L  R  K  F  L  I  S  S  R :   F  L  H  R  L  M  A  T  N  C  G  K  K  F  I  R  I  D  I  S  S  D  T  V  C  P  W  C  F  V  G  K  K  N  L  H  K  A  I  A  L  T  S  D  Q  Y  D  F  E  :  I  K  W  H  P  F  L  L  N  P  S  A  P  K  E  G  I  N  K  K  D  Y  Y  R  N  K  F  G  S  R  S  E  Q  M  M  S  R  M  S  E  :  V  F  K  G  L  G  M  E  Y  N  M  S  G  L  T :   G  S  S  L  D  S  H  R  L  L  Y  F  A  G  Q  Q  G  L  D  K  Q  N  N  L  A  E  E  L  F  L  G  Y  F  T  Q  G  R  Y  I  G  D  R :   E  F  L  I  E  A  A  R  K  V  G  V  E  G  A  A  D  F  L  E  D  P  N  N  G  L  K  E  :  V  N  E  E  L  Q  Q  H  S  S  N  I  S  G  V  P  H  F  V  :  L  N  G  K  Y  Q  L  S  G  G  Q  P  P  E  S  F  I  R  A  F  Q  A  A  S  N  V  T  A  *  F  I  S  N  F  I  *  E  S  F  Y  L  L  *  S  C  M  P  T  G  *  I  P  V  T  L  L  K  V  K  Y  S  I  S  I  I  Y  M  C  S  W  R  L  N  C  T  A  V  I  T  S  V  L  I  S  I  E  G  *  E  I  Y  V  T  *  L  K  *  Y  L  H  R  I  V  V  F  H  S  T  L  Y </first_frame>
            <second_frame>  *  V  V  L  S  P  F  S  H  H  T  K  L  L  N  F  Y  P  F  F  L  K  K  I  C  S  Y  S  R  F  D  F  R  R  S  K  F  W  L  R  P  Q  K  S  L  S  *  F  I  C  F  H  *  I  S  E  N  S  *  F  L  R   : G  S  C  I  D  *  W  P  P  T  V  E  R  S  L  S  E  L  I  S  V  R  I  L  C  A  P  G  A  L  W  G  K  R  T  F  I  K  L  *  R  *  P  V  I  S  M  I  L  R :   L  S  G  I  R  F  F  S  T  L  L  H  L  K  K  G  L  T  R  K  I  T  T  E  I  S  L  D  L  A  L  N  K  *  C  Q  E  C  R  R :   F  L  R  A  L  G  W  N  T  T  C  Q  D  L   : R  E  V  V  W  T  A  T  G  Y  Y  I  S  Q  D  N  R  G  L  T  S  K  I  I  L  L  R  S  F  F  S  A  I  S  H  R  E  G  I  *  V  T   : E  N  F  L  L  K  L  Q  E  K  L  V  W  K  E  Q  L  T  S  L  K  I  P  T  M  G  *  R  R :   *  M  K  S  F  S  N  T  H  Q  I  Y  Q  A  S  H  I  L  C :   *  M  A  S  T  S  *  A  V  A  N  L  Q  R  V  S  Y  E  L  F  K  L  L  Q  M  S  Q  H  S  S  S  P  T  S  S  K  S  L  S  T  S  C  E  V  V  C  P  L  D  R  Y  R  *  L  F  L  K  *  N  I  R  S  V  L  Y  I  C  A  R  G  D  L  I  V  L  Q  *  L  L  L  F  *  F  P  L  K  V  E  R  F  M  *  H  N  *  N  D  I  C  I  V  *  L  F  F  I  V  H  Y   </second_frame>
            <third_frame>   K  L  S  *  V  H  F  H  I  T  P  N  S  *  I  F  T  L  F  S  *  K  K  F  V  P  I  Q  D  L  I  S  E  E  A  N  S  G  *  G  P  K  R  V  F  P  N  L  Y  A  S  I  E  S  P  K  I  P  N  F  F  E  :  V  P  A  S  I  N  G  H  Q  L  W  K  E  V  Y  P  N  *  Y  Q  F  G  Y  C  V  P  L  V  L  C  G  E  K  E  P  S  *  S  Y  S  V  N  Q  *  S  V  *  F  *   : D  *  V  A  S  V  S  S  Q  P  F  C  T  *  R  R  D  *  Q  E  R  L  L  Q  K  *  V  W  I  S  L  *  T  N  D  V  K  N  V  G   : G  F  *  G  P  W  D  G  I  Q  H  V  R  T  Y  :  G  K  *  S  G  Q  P  Q  A  T  I  F  R  R  T  T  G  A  *  Q  A  K  *  S  C  *  G  A  F  S  R  L  F  H  T  G  K  V  Y  R  *  Q  :  R  I  S  Y  *  S  C  K  K  S  W  C  G  R  S  S  *  L  P  *  R  S  Q  Q  W  A  K  G   : G  E  *  R  A  S  A  T  L  I  K  Y  I  R  R  P  T  F  C   : A  K  W  Q  V  P  V  E  R  W  P  T  S  R  E  F  H  T  S  F  S  S  C  F  K  C  H  S  I  V  H  L  Q  L  H  L  R  V  F  L  P  L  V  K  L  Y  A  H  W  I  D  T  G  D  S  S  *  S  E  I  F  D  Q  Y  Y  I  Y  V  L  V  A  T  *  L  Y  C  S  N  Y  F  C  F  N  F  H  *  R  L  R  D  L  C  D  I  I  E  M  I  F  A  S  Y  S  C  F  S  *  Y  I  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0092M23.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49258" stop="49164"/>
                    <exon start="48495" stop="48348"/>
                    <exon start="48265" stop="48146"/>
                    <exon start="48045" stop="48002"/>
                    <exon start="47916" stop="47791"/>
                    <exon start="47469" stop="47385"/>
                    <exon start="47010" stop="46954"/>
                    <exon start="46861" stop="46775"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>759</number_coding_nucleotides>
                  <number_encoded_amino_acids>253</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQKKQILVKAPKESFLIYMLPLNLRKFLISSRFLHRLMATNCGKKFIRIDISSDTVCPWCFVGKKNLHKAIALTSDQYDFEIKWHPFLLNPSAPKEGINKKDYYRNKFGSRSEQMMSRMSEVFKGLGMEYNMSGLTGSSLDSHRLLYFAGQQGLDKQNNLAEELFLGYFTQGRYIGDREFLIEAARKVGVEGAADFLEDPNNGLKEVNEELQQHSSNISGVPHFVLNGKYQLSGGQPPESFIRAFQAASNVTA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="48496" e_stop="48348"/>
            <exon e_start="48265" e_stop="48146"/>
            <exon e_start="48045" e_stop="48002"/>
            <exon e_start="47916" e_stop="47791"/>
            <exon e_start="47469" e_stop="47385"/>
            <exon e_start="47010" e_stop="46954"/>
            <exon e_start="46861" e_stop="46532"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.361" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.932" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.871" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.857" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="48496" e_stop="48348" e_length="149"/>
          </exon>
          <intron i_serial="1" don_prob="0.361" acc_prob="0.998">
            <gDNA_intron_boundary i_start="48347" i_stop="48266" i_length="82"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="48265" e_stop="48146" e_length="120"/>
          </exon>
          <intron i_serial="2" don_prob="0.932" acc_prob="0.990">
            <gDNA_intron_boundary i_start="48145" i_stop="48046" i_length="100"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="48045" e_stop="48002" e_length="44"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="48001" i_stop="47917" i_length="85"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="47916" e_stop="47791" e_length="126"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.871">
            <gDNA_intron_boundary i_start="47790" i_stop="47470" i_length="321"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="47469" e_stop="47385" e_length="85"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="47384" i_stop="47011" i_length="374"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="47010" e_stop="46954" e_length="57"/>
          </exon>
          <intron i_serial="6" don_prob="0.952" acc_prob="0.857">
            <gDNA_intron_boundary i_start="46953" i_stop="46862" i_length="92"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="46861" e_stop="46532" e_length="330"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48496" stop="48348"/>
              <exon start="48265" stop="48146"/>
              <exon start="48045" stop="48002"/>
              <exon start="47916" stop="47791"/>
              <exon start="47469" stop="47385"/>
              <exon start="47010" stop="46954"/>
              <exon start="46861" stop="46532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714623" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48485" stop="48348"/>
              <exon start="48265" stop="48146"/>
              <exon start="48045" stop="48002"/>
              <exon start="47916" stop="47791"/>
              <exon start="47469" stop="47385"/>
              <exon start="47010" stop="46954"/>
              <exon start="46861" stop="46689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546407" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48484" stop="48348"/>
              <exon start="48265" stop="48146"/>
              <exon start="48045" stop="48002"/>
              <exon start="47916" stop="47827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48460" stop="48348"/>
              <exon start="48265" stop="48146"/>
              <exon start="48045" stop="48002"/>
              <exon start="47916" stop="47791"/>
              <exon start="47469" stop="47385"/>
              <exon start="47010" stop="46954"/>
              <exon start="46861" stop="46664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48363" stop="48348"/>
              <exon start="48265" stop="48146"/>
              <exon start="48045" stop="48002"/>
              <exon start="47916" stop="47791"/>
              <exon start="47469" stop="47385"/>
              <exon start="47010" stop="46954"/>
              <exon start="46861" stop="46532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48354" stop="48348"/>
              <exon start="48265" stop="48146"/>
              <exon start="48045" stop="48002"/>
              <exon start="47916" stop="47791"/>
              <exon start="47469" stop="47385"/>
              <exon start="47010" stop="46954"/>
              <exon start="46861" stop="46679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48211" stop="48146"/>
              <exon start="48045" stop="48002"/>
              <exon start="47916" stop="47791"/>
              <exon start="47469" stop="47385"/>
              <exon start="47010" stop="46954"/>
              <exon start="46861" stop="46757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276225" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48179" stop="48146"/>
              <exon start="48045" stop="48002"/>
              <exon start="47916" stop="47791"/>
              <exon start="47469" stop="47385"/>
              <exon start="47010" stop="46954"/>
              <exon start="46861" stop="46655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48179" stop="48146"/>
              <exon start="48045" stop="48002"/>
              <exon start="47916" stop="47791"/>
              <exon start="47469" stop="47385"/>
              <exon start="47010" stop="46954"/>
              <exon start="46861" stop="46757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48179" stop="48146"/>
              <exon start="48045" stop="48002"/>
              <exon start="47916" stop="47791"/>
              <exon start="47469" stop="47385"/>
              <exon start="47010" stop="46954"/>
              <exon start="46861" stop="46781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257796" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47469" stop="47385"/>
              <exon start="47010" stop="46954"/>
              <exon start="46861" stop="46556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47411" stop="47385"/>
              <exon start="47010" stop="46954"/>
              <exon start="46861" stop="46561"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46997" stop="46954"/>
              <exon start="46861" stop="46556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46986" stop="46954"/>
              <exon start="46861" stop="46556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221161" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTTCCTGCATCGATTAATGGCCACCAACTGTGGAAAGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTCATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTTTGAG : ATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATGTCGGAG : GTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTAC : GGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAG : AGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAG : GTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTG : CTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGTCACAGCATAGTTCATCTCCAACTTCATCTAAGAGTCTTTCTACCTCTTGTGAAGTTGTATGCCCACTGGATAGATACCGGTGACTCTTCTTAAAGTGAAATATTCGATCAGTATTATATATATGTGCTCGTGGCGACTTAATTGTACTGCAGTAATTACTTCTGTTTTAATTTCCATTGAAGGTTGAGAGATTTATGTGACATAATTGAAATGATATTTGCATCGTATAGTTGTTTTTCATAGTACATTATAT</gDNA_template>
            <first_frame> G  S  C  I  D  *  W  P  P  T  V  E  R  S  L  S  E  L  I  S  V  R  I  L  C  A  P  G  A  L  W  G  K  R  T  F  I  K  L  *  R  *  P  V  I  S  M  I  L  R :   L  S  G  I  R  F  F  S  T  L  L  H  L  K  K  G  L  T  R  K  I  T  T  E  I  S  L  D  L  A  L  N  K  *  C  Q  E  C  R  R :   F  L  R  A  L  G  W  N  T  T  C  Q  D  L   : R  E  V  V  W  T  A  T  G  Y  Y  I  S  Q  D  N  R  G  L  T  S  K  I  I  L  L  R  S  F  F  S  A  I  S  H  R  E  G  I  *  V  T   : E  N  F  L  L  K  L  Q  E  K  L  V  W  K  E  Q  L  T  S  L  K  I  P  T  M  G  *  R  R :   *  M  K  S  F  S  N  T  H  Q  I  Y  Q  A  S  H  I  L  C :   *  M  A  S  T  S  *  A  V  A  N  L  Q  R  V  S  Y  E  L  F  K  L  L  Q  M  S  Q  H  S  S  S  P  T  S  S  K  S  L  S  T  S  C  E  V  V  C  P  L  D  R  Y  R  *  L  F  L  K  *  N  I  R  S  V  L  Y  I  C  A  R  G  D  L  I  V  L  Q  *  L  L  L  F  *  F  P  L  K  V  E  R  F  M  *  H  N  *  N  D  I  C  I  V  *  L  F  F  I  V  H  Y   </first_frame>
            <second_frame>  V  P  A  S  I  N  G  H  Q  L  W  K  E  V  Y  P  N  *  Y  Q  F  G  Y  C  V  P  L  V  L  C  G  E  K  E  P  S  *  S  Y  S  V  N  Q  *  S  V  *  F  *   : D  *  V  A  S  V  S  S  Q  P  F  C  T  *  R  R  D  *  Q  E  R  L  L  Q  K  *  V  W  I  S  L  *  T  N  D  V  K  N  V  G   : G  F  *  G  P  W  D  G  I  Q  H  V  R  T  Y  :  G  K  *  S  G  Q  P  Q  A  T  I  F  R  R  T  T  G  A  *  Q  A  K  *  S  C  *  G  A  F  S  R  L  F  H  T  G  K  V  Y  R  *  Q  :  R  I  S  Y  *  S  C  K  K  S  W  C  G  R  S  S  *  L  P  *  R  S  Q  Q  W  A  K  G   : G  E  *  R  A  S  A  T  L  I  K  Y  I  R  R  P  T  F  C   : A  K  W  Q  V  P  V  E  R  W  P  T  S  R  E  F  H  T  S  F  S  S  C  F  K  C  H  S  I  V  H  L  Q  L  H  L  R  V  F  L  P  L  V  K  L  Y  A  H  W  I  D  T  G  D  S  S  *  S  E  I  F  D  Q  Y  Y  I  Y  V  L  V  A  T  *  L  Y  C  S  N  Y  F  C  F  N  F  H  *  R  L  R  D  L  C  D  I  I  E  M  I  F  A  S  Y  S  C  F  S  *  Y  I  I  </second_frame>
            <third_frame>   F  L  H  R  L  M  A  T  N  C  G  K  K  F  I  R  I  D  I  S  S  D  T  V  C  P  W  C  F  V  G  K  K  N  L  H  K  A  I  A  L  T  S  D  Q  Y  D  F  E  :  I  K  W  H  P  F  L  L  N  P  S  A  P  K  E  G  I  N  K  K  D  Y  Y  R  N  K  F  G  S  R  S  E  Q  M  M  S  R  M  S  E  :  V  F  K  G  L  G  M  E  Y  N  M  S  G  L  T :   G  S  S  L  D  S  H  R  L  L  Y  F  A  G  Q  Q  G  L  D  K  Q  N  N  L  A  E  E  L  F  L  G  Y  F  T  Q  G  R  Y  I  G  D  R :   E  F  L  I  E  A  A  R  K  V  G  V  E  G  A  A  D  F  L  E  D  P  N  N  G  L  K  E  :  V  N  E  E  L  Q  Q  H  S  S  N  I  S  G  V  P  H  F  V  :  L  N  G  K  Y  Q  L  S  G  G  Q  P  P  E  S  F  I  R  A  F  Q  A  A  S  N  V  T  A  *  F  I  S  N  F  I  *  E  S  F  Y  L  L  *  S  C  M  P  T  G  *  I  P  V  T  L  L  K  V  K  Y  S  I  S  I  I  Y  M  C  S  W  R  L  N  C  T  A  V  I  T  S  V  L  I  S  I  E  G  *  E  I  Y  V  T  *  L  K  *  Y  L  H  R  I  V  V  F  H  S  T  L  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0092M23.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48494" stop="48348"/>
                    <exon start="48265" stop="48146"/>
                    <exon start="48045" stop="48002"/>
                    <exon start="47916" stop="47791"/>
                    <exon start="47469" stop="47385"/>
                    <exon start="47010" stop="46954"/>
                    <exon start="46861" stop="46775"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>663</number_coding_nucleotides>
                  <number_encoded_amino_acids>221</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLHRLMATNCGKKFIRIDISSDTVCPWCFVGKKNLHKAIALTSDQYDFEIKWHPFLLNPSAPKEGINKKDYYRNKFGSRSEQMMSRMSEVFKGLGMEYNMSGLTGSSLDSHRLLYFAGQQGLDKQNNLAEELFLGYFTQGRYIGDREFLIEAARKVGVEGAADFLEDPNNGLKEVNEELQQHSSNISGVPHFVLNGKYQLSGGQPPESFIRAFQAASNVTA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="49351" e_stop="49164"/>
            <exon e_start="48495" e_stop="48348"/>
            <exon e_start="48265" e_stop="48146"/>
            <exon e_start="48045" e_stop="48002"/>
            <exon e_start="47916" e_stop="47791"/>
            <exon e_start="47469" e_stop="46954"/>
            <exon e_start="46861" e_stop="46556"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.891" e_score="1.000"/>
          <exon-intron don_prob="0.361" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.932" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.871" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.857" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="49351" e_stop="49164" e_length="188"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.891">
            <gDNA_intron_boundary i_start="49163" i_stop="48496" i_length="668"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="48495" e_stop="48348" e_length="148"/>
          </exon>
          <intron i_serial="2" don_prob="0.361" acc_prob="0.998">
            <gDNA_intron_boundary i_start="48347" i_stop="48266" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="48265" e_stop="48146" e_length="120"/>
          </exon>
          <intron i_serial="3" don_prob="0.932" acc_prob="0.990">
            <gDNA_intron_boundary i_start="48145" i_stop="48046" i_length="100"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="48045" e_stop="48002" e_length="44"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="48001" i_stop="47917" i_length="85"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="47916" e_stop="47791" e_length="126"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.871">
            <gDNA_intron_boundary i_start="47790" i_stop="47470" i_length="321"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="47469" e_stop="46954" e_length="516"/>
          </exon>
          <intron i_serial="6" don_prob="0.952" acc_prob="0.857">
            <gDNA_intron_boundary i_start="46953" i_stop="46862" i_length="92"/>
          </intron>
          <exon e_serial="7" e_score="0.997">
            <gDNA_exon_boundary e_start="46861" e_stop="46556" e_length="306"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49351" stop="49164"/>
              <exon start="48495" stop="48348"/>
              <exon start="48265" stop="48152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49351" stop="49164"/>
              <exon start="48495" stop="48348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49346" stop="49164"/>
              <exon start="48495" stop="48348"/>
              <exon start="48265" stop="48146"/>
              <exon start="48045" stop="48002"/>
              <exon start="47916" stop="47791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49313" stop="49164"/>
              <exon start="48495" stop="48348"/>
              <exon start="48265" stop="48153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49299" stop="49164"/>
              <exon start="48495" stop="48348"/>
              <exon start="48265" stop="48146"/>
              <exon start="48045" stop="48002"/>
              <exon start="47916" stop="47791"/>
              <exon start="47469" stop="47427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337771" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49252" stop="49164"/>
              <exon start="48495" stop="48348"/>
              <exon start="48265" stop="48146"/>
              <exon start="48045" stop="48034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49239" stop="49164"/>
              <exon start="48495" stop="48348"/>
              <exon start="48265" stop="48146"/>
              <exon start="48045" stop="48002"/>
              <exon start="47916" stop="47791"/>
              <exon start="47469" stop="47393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205609" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49188" stop="49164"/>
              <exon start="48495" stop="48348"/>
              <exon start="48265" stop="48146"/>
              <exon start="48045" stop="48002"/>
              <exon start="47916" stop="47791"/>
              <exon start="47469" stop="47432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48484" stop="48348"/>
              <exon start="48265" stop="48146"/>
              <exon start="48045" stop="48002"/>
              <exon start="47916" stop="47827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47469" stop="46954"/>
              <exon start="46861" stop="46667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46997" stop="46954"/>
              <exon start="46861" stop="46556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46986" stop="46954"/>
              <exon start="46861" stop="46556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221161" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAAGTTGTCCTAAGTCCATTTTCACATCACACCAAACTCCTAAATTTTTACCCTTTTTTCCTAAAAAAAATTTGTTCCTATTCAAGATTTGATTTCAGAAGAAGCAAATTCTGGTTAAGGCCCCAAAAGAGTCTTTCCTAATTTATATGCTTCCATTGAATCTCCGAAAATTCCTAATTTCTTCGAG : GTTCCTGCATCGATTAATGGCCACCAACTGTGGAAAGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTCATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTTTGAG : ATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATGTCGGAG : GTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTAC : GGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAG : AGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAGGTATATTTCCACAGCTTCTATCCAATAGCCAACTGGAGAGTCTGTCTTCTATTTTTCTTGCTCGTTTCCTTTCTCGCAGAACATTCACTGAGGGGTGTGTGGGTGTGGGTGTAAGTAGTACTGCTGGAGAACTGCTAAAGACAGTAGTAAAGCAGCCCATCTCAATTATATCTGTACTTGGCATTATGACTAGTATTTTGTCCTGCTCCTTGATGGACCTAGTCATTCATATCACATGTTACCTAATTTTCAGTACCTCATGCTCACTACTACTACTACTTCCCCAATCCCCCCTGCAGGTTGGCTCGTCAGTAGGATAGATCACAATTTTATAAATATTTAAAGTAAATTTTGTTGGTTTTGGGTATGTGAAGGTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTG : CTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGTCACAGCATAGTTCATCTCCAACTTCATCTAAGAGTCTTTCTACCTCTTGTGAAGTTGTATGCCCACTGGATAGATACCGGTGACTCTTCTTAAAGTGAAATATTCGATCAGTATTATATATATGTGCTCGTGGCGACTTAATTGTACTGCAGTAATTACTTCTGTTTTAATTTCCATTGAAGGTTGAGAGATTTATGTGACATAATTGAAATGATATTTGCATCGTATA</gDNA_template>
            <first_frame> L  S  C  P  K  S  I  F  T  S  H  Q  T  P  K  F  L  P  F  F  P  K  K  N  L  F  L  F  K  I  *  F  Q  K  K  Q  I  L  V  K  A  P  K  E  S  F  L  I  Y  M  L  P  L  N  L  R  K  F  L  I  S  S  R :   F  L  H  R  L  M  A  T  N  C  G  K  K  F  I  R  I  D  I  S  S  D  T  V  C  P  W  C  F  V  G  K  K  N  L  H  K  A  I  A  L  T  S  D  Q  Y  D  F  E  :  I  K  W  H  P  F  L  L  N  P  S  A  P  K  E  G  I  N  K  K  D  Y  Y  R  N  K  F  G  S  R  S  E  Q  M  M  S  R  M  S  E  :  V  F  K  G  L  G  M  E  Y  N  M  S  G  L  T :   G  S  S  L  D  S  H  R  L  L  Y  F  A  G  Q  Q  G  L  D  K  Q  N  N  L  A  E  E  L  F  L  G  Y  F  T  Q  G  R  Y  I  G  D  R :   E  F  L  I  E  A  A  R  K  V  G  V  E  G  A  A  D  F  L  E  D  P  N  N  G  L  K  E  V  Y  F  H  S  F  Y  P  I  A  N  W  R  V  C  L  L  F  F  L  L  V  S  F  L  A  E  H  S  L  R  G  V  W  V  W  V  *  V  V  L  L  E  N  C  *  R  Q  *  *  S  S  P  S  Q  L  Y  L  Y  L  A  L  *  L  V  F  C  P  A  P  *  W  T  *  S  F  I  S  H  V  T  *  F  S  V  P  H  A  H  Y  Y  Y  Y  F  P  N  P  P  C  R  L  A  R  Q  *  D  R  S  Q  F  Y  K  Y  L  K  *  I  L  L  V  L  G  M  *  R  *  M  K  S  F  S  N  T  H  Q  I  Y  Q  A  S  H  I  L  C :   *  M  A  S  T  S  *  A  V  A  N  L  Q  R  V  S  Y  E  L  F  K  L  L  Q  M  S  Q  H  S  S  S  P  T  S  S  K  S  L  S  T  S  C  E  V  V  C  P  L  D  R  Y  R  *  L  F  L  K  *  N  I  R  S  V  L  Y  I  C  A  R  G  D  L  I  V  L  Q  *  L  L  L  F  *  F  P  L  K  V  E  R  F  M  *  H  N  *  N  D  I  C  I  V   </first_frame>
            <second_frame>  *  V  V  L  S  P  F  S  H  H  T  K  L  L  N  F  Y  P  F  F  L  K  K  I  C  S  Y  S  R  F  D  F  R  R  S  K  F  W  L  R  P  Q  K  S  L  S  *  F  I  C  F  H  *  I  S  E  N  S  *  F  L  R   : G  S  C  I  D  *  W  P  P  T  V  E  R  S  L  S  E  L  I  S  V  R  I  L  C  A  P  G  A  L  W  G  K  R  T  F  I  K  L  *  R  *  P  V  I  S  M  I  L  R :   L  S  G  I  R  F  F  S  T  L  L  H  L  K  K  G  L  T  R  K  I  T  T  E  I  S  L  D  L  A  L  N  K  *  C  Q  E  C  R  R :   F  L  R  A  L  G  W  N  T  T  C  Q  D  L   : R  E  V  V  W  T  A  T  G  Y  Y  I  S  Q  D  N  R  G  L  T  S  K  I  I  L  L  R  S  F  F  S  A  I  S  H  R  E  G  I  *  V  T   : E  N  F  L  L  K  L  Q  E  K  L  V  W  K  E  Q  L  T  S  L  K  I  P  T  M  G  *  R  R  Y  I  S  T  A  S  I  Q  *  P  T  G  E  S  V  F  Y  F  S  C  S  F  P  F  S  Q  N  I  H  *  G  V  C  G  C  G  C  K  *  Y  C  W  R  T  A  K  D  S  S  K  A  A  H  L  N  Y  I  C  T  W  H  Y  D  *  Y  F  V  L  L  L  D  G  P  S  H  S  Y  H  M  L  P  N  F  Q  Y  L  M  L  T  T  T  T  T  S  P  I  P  P  A  G  W  L  V  S  R  I  D  H  N  F  I  N  I  *  S  K  F  C  W  F  W  V  C  E  G  E  *  R  A  S  A  T  L  I  K  Y  I  R  R  P  T  F  C   : A  K  W  Q  V  P  V  E  R  W  P  T  S  R  E  F  H  T  S  F  S  S  C  F  K  C  H  S  I  V  H  L  Q  L  H  L  R  V  F  L  P  L  V  K  L  Y  A  H  W  I  D  T  G  D  S  S  *  S  E  I  F  D  Q  Y  Y  I  Y  V  L  V  A  T  *  L  Y  C  S  N  Y  F  C  F  N  F  H  *  R  L  R  D  L  C  D  I  I  E  M  I  F  A  S  Y  </second_frame>
            <third_frame>   K  L  S  *  V  H  F  H  I  T  P  N  S  *  I  F  T  L  F  S  *  K  K  F  V  P  I  Q  D  L  I  S  E  E  A  N  S  G  *  G  P  K  R  V  F  P  N  L  Y  A  S  I  E  S  P  K  I  P  N  F  F  E  :  V  P  A  S  I  N  G  H  Q  L  W  K  E  V  Y  P  N  *  Y  Q  F  G  Y  C  V  P  L  V  L  C  G  E  K  E  P  S  *  S  Y  S  V  N  Q  *  S  V  *  F  *   : D  *  V  A  S  V  S  S  Q  P  F  C  T  *  R  R  D  *  Q  E  R  L  L  Q  K  *  V  W  I  S  L  *  T  N  D  V  K  N  V  G   : G  F  *  G  P  W  D  G  I  Q  H  V  R  T  Y  :  G  K  *  S  G  Q  P  Q  A  T  I  F  R  R  T  T  G  A  *  Q  A  K  *  S  C  *  G  A  F  S  R  L  F  H  T  G  K  V  Y  R  *  Q  :  R  I  S  Y  *  S  C  K  K  S  W  C  G  R  S  S  *  L  P  *  R  S  Q  Q  W  A  K  G  G  I  F  P  Q  L  L  S  N  S  Q  L  E  S  L  S  S  I  F  L  A  R  F  L  S  R  R  T  F  T  E  G  C  V  G  V  G  V  S  S  T  A  G  E  L  L  K  T  V  V  K  Q  P  I  S  I  I  S  V  L  G  I  M  T  S  I  L  S  C  S  L  M  D  L  V  I  H  I  T  C  Y  L  I  F  S  T  S  C  S  L  L  L  L  L  P  Q  S  P  L  Q  V  G  S  S  V  G  *  I  T  I  L  *  I  F  K  V  N  F  V  G  F  G  Y  V  K  V  N  E  E  L  Q  Q  H  S  S  N  I  S  G  V  P  H  F  V  :  L  N  G  K  Y  Q  L  S  G  G  Q  P  P  E  S  F  I  R  A  F  Q  A  A  S  N  V  T  A  *  F  I  S  N  F  I  *  E  S  F  Y  L  L  *  S  C  M  P  T  G  *  I  P  V  T  L  L  K  V  K  Y  S  I  S  I  I  Y  M  C  S  W  R  L  N  C  T  A  V  I  T  S  V  L  I  S  I  E  G  *  E  I  Y  V  T  *  L  K  *  Y  L  H  R  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0092M23.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49258" stop="49164"/>
                    <exon start="48495" stop="48348"/>
                    <exon start="48265" stop="48146"/>
                    <exon start="48045" stop="48002"/>
                    <exon start="47916" stop="47791"/>
                    <exon start="47469" stop="47271"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>729</number_coding_nucleotides>
                  <number_encoded_amino_acids>243</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQKKQILVKAPKESFLIYMLPLNLRKFLISSRFLHRLMATNCGKKFIRIDISSDTVCPWCFVGKKNLHKAIALTSDQYDFEIKWHPFLLNPSAPKEGINKKDYYRNKFGSRSEQMMSRMSEVFKGLGMEYNMSGLTGSSLDSHRLLYFAGQQGLDKQNNLAEELFLGYFTQGRYIGDREFLIEAARKVGVEGAADFLEDPNNGLKEVYFHSFYPIANWRVCLLFFLLVSFLAEHSLRGVWVWV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0092M23.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47002" stop="46954"/>
                    <exon start="46861" stop="46692"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RASATLIKYIRRPTFCAKWQVPVERWPTSREFHTSFSSCFKCHSIVHLQLHLRVFLPLVKLYAHWIDTGDSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="51001" PGL_stop="55852"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51001" e_stop="51113"/>
            <exon e_start="51232" e_stop="51495"/>
            <exon e_start="52220" e_stop="52413"/>
            <exon e_start="52499" e_stop="52546"/>
            <exon e_start="52824" e_stop="52896"/>
            <exon e_start="53113" e_stop="53284"/>
            <exon e_start="54801" e_stop="55232"/>
            <exon e_start="55319" e_stop="55510"/>
            <exon e_start="55626" e_stop="55852"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.924" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.792" e_score="1.000"/>
          <exon-intron don_prob="0.923" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.932" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.923" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.253" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.256" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="51001" e_stop="51113" e_length="113"/>
          </exon>
          <intron i_serial="1" don_prob="0.924" acc_prob="0.978">
            <gDNA_intron_boundary i_start="51114" i_stop="51231" i_length="118"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="51232" e_stop="51495" e_length="264"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.792">
            <gDNA_intron_boundary i_start="51496" i_stop="52219" i_length="724"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="52220" e_stop="52413" e_length="194"/>
          </exon>
          <intron i_serial="3" don_prob="0.923" acc_prob="0.998">
            <gDNA_intron_boundary i_start="52414" i_stop="52498" i_length="85"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="52499" e_stop="52546" e_length="48"/>
          </exon>
          <intron i_serial="4" don_prob="0.981" acc_prob="0.932">
            <gDNA_intron_boundary i_start="52547" i_stop="52823" i_length="277"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="52824" e_stop="52896" e_length="73"/>
          </exon>
          <intron i_serial="5" don_prob="0.982" acc_prob="0.961">
            <gDNA_intron_boundary i_start="52897" i_stop="53112" i_length="216"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="53113" e_stop="53284" e_length="172"/>
          </exon>
          <intron i_serial="6" don_prob="0.923" acc_prob="0.990">
            <gDNA_intron_boundary i_start="53285" i_stop="54800" i_length="1516"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="54801" e_stop="55232" e_length="432"/>
          </exon>
          <intron i_serial="7" don_prob="0.253" acc_prob="0.978">
            <gDNA_intron_boundary i_start="55233" i_stop="55318" i_length="86"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="55319" e_stop="55510" e_length="192"/>
          </exon>
          <intron i_serial="8" don_prob="0.256" acc_prob="0.997">
            <gDNA_intron_boundary i_start="55511" i_stop="55625" i_length="115"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="55626" e_stop="55852" e_length="227"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51001" stop="51113"/>
              <exon start="51232" stop="51495"/>
              <exon start="52220" stop="52413"/>
              <exon start="52499" stop="52546"/>
              <exon start="52824" stop="52866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51001" stop="51113"/>
              <exon start="51232" stop="51495"/>
              <exon start="52220" stop="52380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324745" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51009" stop="51113"/>
              <exon start="51232" stop="51495"/>
              <exon start="52220" stop="52311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51033" stop="51113"/>
              <exon start="51232" stop="51495"/>
              <exon start="52220" stop="52413"/>
              <exon start="52499" stop="52546"/>
              <exon start="52824" stop="52896"/>
              <exon start="53113" stop="53263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51034" stop="51113"/>
              <exon start="51232" stop="51495"/>
              <exon start="52220" stop="52404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51246" stop="51495"/>
              <exon start="52220" stop="52413"/>
              <exon start="52499" stop="52546"/>
              <exon start="52824" stop="52896"/>
              <exon start="53113" stop="53263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345846" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52299" stop="52413"/>
              <exon start="52499" stop="52546"/>
              <exon start="52824" stop="52896"/>
              <exon start="53113" stop="53284"/>
              <exon start="54801" stop="55083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52299" stop="52413"/>
              <exon start="52499" stop="52546"/>
              <exon start="52824" stop="52896"/>
              <exon start="53113" stop="53284"/>
              <exon start="54801" stop="55069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327219" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54861" stop="55232"/>
              <exon start="55319" stop="55510"/>
              <exon start="55626" stop="55851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548928" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55009" stop="55232"/>
              <exon start="55319" stop="55510"/>
              <exon start="55626" stop="55794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55096" stop="55232"/>
              <exon start="55319" stop="55510"/>
              <exon start="55626" stop="55852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55096" stop="55232"/>
              <exon start="55319" stop="55510"/>
              <exon start="55626" stop="55851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55096" stop="55232"/>
              <exon start="55319" stop="55510"/>
              <exon start="55626" stop="55837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55097" stop="55232"/>
              <exon start="55319" stop="55510"/>
              <exon start="55626" stop="55700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284801" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55379" stop="55510"/>
              <exon start="55626" stop="55843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284803" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGAATTGGCAGTCCTGTCCTCCCTCCATCCAATTTCTTTGGAGCTCAAACTGCAACCTTAGATTCTTCAAATTTTCCGGATAAAATTACTTCCATTGTTTCTCGATTTCATC : TGAGAAATAAAATGGATATTGATGAAATACTTGGGGTATCTCGGCCTGTGAGTTTGACAAACAAGAGTGCTATTTATGTTTGGGGTTACAATCAATCTGGGCAAACGGGTCGGAGAGGGAAAGAGAGGAGTTTGAGGATCCCAAAACAGCTTCCTCCAGAGCTATTTGGATGCCCAGCTGGTGGGAATTCCCGTTGGTTGGATATTGCTTGTGGTCGTGAGCATACTGCTGCTGTGGCTTCTGATGGATCGCTTTTTACATGGG : GAGCTAACGAATTTGGTCAGCTGGGTGACGGAACTGAAAATGCTAGGAAGCACCCCAAGAAAGTGAAACAATTGCAATCTGAATTTGTTATTAGTGTTTCATGTGGAGCACATTGTACTGTTGCCATTGCAGAACCACGTGAAAACGATGGTAGCATGTCAGCTCGGAGACTTTGGGTTTGGGGACAGAACCAG : GGATCCAATTACCCACGACTCTTTTGGGGTGCCTTTTCTCCTTCTACG : GTTATTCGCCAAGTTTCTTGTGGTGCTGTTCATGTTGTAGCTCTATCAGAAGAAGGGTTACTACAAGCTTGGG : GCTATAATGAATATGGTCAGCTTGGCAGAGGTGTTACATCAGAAGGCCTTCAAGGCCCTTGTGTAATTAATGGATATGCTAGATTTCTTGATGAAGCCCCTGAACTTGTGAAGATTACCCAAGTGTCATGCGGGGAGTACCATACTGCAGCTATATCAGAGAAAGGCGAGGT : CTATACGTGGGGATTGGGGAGCGTGGGACAACTTGGCCATTGTTCACTTCAGTCAGGTGACAAGGAACTTTTACCTAGGCGTGTAGTTTCCCTTGATGGCATATGTATTAAAGAAGTTGCCTGTGGTGGTGTTCACACCTGTGCTGTGACTGCGAAAGGGGCTCTTTATGCTTGGGGTGGAGGTCAGGCTGGGCAATTGGGAGTTGGGCCATTAAATGGATTCTTTTCATGCAAGCTCAATGAATCTGAGATGATGCTCCGAAATATACCAGTGTTGGTTGTTCCAGATGGTGTGCAACTCGTTGCATGTGGTCATTCACACACACTTACTTCTGCTAAAGACGGACGAATACATGGATGGGGTTATAACTGCTATGGTCAAGCGGCTAATGAGAAGTCTACATATGCCTGGTGTCCATCACCAGTTGATTG : GTGTGTTGGGGCAGTCCGAAAATTGGCTGCTGGTGGTGGACATTCAGCAGTGCTGACTGATGCATGCTCTCTAAAAGAGCTGTGTGAATTTAGGCTTGCAGAAACAGTGAATCCATCCAATGCTTCAGTGGTTGAGGATGTCGCCTCAAGAACAGGAGCTGATGCTTTAGCACGACTTTGTGAAAGATTGAG : GGAGCATTACTACAATGATGATGAGTTTGGTCTGTGAAATCATTGATGGGTGTTAAATATGTAACATACCAATAATTCAGCCATTAGATTTGATTCTTCAATCCATCTAATACAATAGAGAAAACAGAGTCTTTGTTTCATCATTGAATAAATGTATTCTACTTTTTATGCTGCTGCATCATTAAGTTAATACAACAAAACATCTACTTACAATTTAACCATTAATT</gDNA_template>
            <first_frame> R  N  W  Q  S  C  P  P  S  I  Q  F  L  W  S  S  N  C  N  L  R  F  F  K  F  S  G  *  N  Y  F  H  C  F  S  I  S  S :   E  K  *  N  G  Y  *  *  N  T  W  G  I  S  A  C  E  F  D  K  Q  E  C  Y  L  C  L  G  L  Q  S  I  W  A  N  G  S  E  R  E  R  E  E  F  E  D  P  K  T  A  S  S  R  A  I  W  M  P  S  W  W  E  F  P  L  V  G  Y  C  L  W  S  *  A  Y  C  C  C  G  F  *  W  I  A  F  Y  M  G :   S  *  R  I  W  S  A  G  *  R  N  *  K  C  *  E  A  P  Q  E  S  E  T  I  A  I  *  I  C  Y  *  C  F  M  W  S  T  L  Y  C  C  H  C  R  T  T  *  K  R  W  *  H  V  S  S  E  T  L  G  L  G  T  E  P   : G  I  Q  L  P  T  T  L  L  G  C  L  F  S  F  Y   : G  Y  S  P  S  F  L  W  C  C  S  C  C  S  S  I  R  R  R  V  T  T  S  L  G :   L  *  *  I  W  S  A  W  Q  R  C  Y  I  R  R  P  S  R  P  L  C  N  *  W  I  C  *  I  S  *  *  S  P  *  T  C  E  D  Y  P  S  V  M  R  G  V  P  Y  C  S  Y  I  R  E  R  R  G  :  L  Y  V  G  I  G  E  R  G  T  T  W  P  L  F  T  S  V  R  *  Q  G  T  F  T  *  A  C  S  F  P  *  W  H  M  Y  *  R  S  C  L  W  W  C  S  H  L  C  C  D  C  E  R  G  S  L  C  L  G  W  R  S  G  W  A  I  G  S  W  A  I  K  W  I  L  F  M  Q  A  Q  *  I  *  D  D  A  P  K  Y  T  S  V  G  C  S  R  W  C  A  T  R  C  M  W  S  F  T  H  T  Y  F  C  *  R  R  T  N  T  W  M  G  L  *  L  L  W  S  S  G  *  *  E  V  Y  I  C  L  V  S  I  T  S  *  L  :  V  C  W  G  S  P  K  I  G  C  W  W  W  T  F  S  S  A  D  *  C  M  L  S  K  R  A  V  *  I  *  A  C  R  N  S  E  S  I  Q  C  F  S  G  *  G  C  R  L  K  N  R  S  *  C  F  S  T  T  L  *  K  I  E  :  G  A  L  L  Q  *  *  *  V  W  S  V  K  S  L  M  G  V  K  Y  V  T  Y  Q  *  F  S  H  *  I  *  F  F  N  P  S  N  T  I  E  K  T  E  S  L  F  H  H  *  I  N  V  F  Y  F  L  C  C  C  I  I  K  L  I  Q  Q  N  I  Y  L  Q  F  N  H  *   </first_frame>
            <second_frame>  G  I  G  S  P  V  L  P  P  S  N  F  F  G  A  Q  T  A  T  L  D  S  S  N  F  P  D  K  I  T  S  I  V  S  R  F  H   : L  R  N  K  M  D  I  D  E  I  L  G  V  S  R  P  V  S  L  T  N  K  S  A  I  Y  V  W  G  Y  N  Q  S  G  Q  T  G  R  R  G  K  E  R  S  L  R  I  P  K  Q  L  P  P  E  L  F  G  C  P  A  G  G  N  S  R  W  L  D  I  A  C  G  R  E  H  T  A  A  V  A  S  D  G  S  L  F  T  W   : G  A  N  E  F  G  Q  L  G  D  G  T  E  N  A  R  K  H  P  K  K  V  K  Q  L  Q  S  E  F  V  I  S  V  S  C  G  A  H  C  T  V  A  I  A  E  P  R  E  N  D  G  S  M  S  A  R  R  L  W  V  W  G  Q  N  Q  :  G  S  N  Y  P  R  L  F  W  G  A  F  S  P  S  T  :  V  I  R  Q  V  S  C  G  A  V  H  V  V  A  L  S  E  E  G  L  L  Q  A  W   : G  Y  N  E  Y  G  Q  L  G  R  G  V  T  S  E  G  L  Q  G  P  C  V  I  N  G  Y  A  R  F  L  D  E  A  P  E  L  V  K  I  T  Q  V  S  C  G  E  Y  H  T  A  A  I  S  E  K  G  E  V :   Y  T  W  G  L  G  S  V  G  Q  L  G  H  C  S  L  Q  S  G  D  K  E  L  L  P  R  R  V  V  S  L  D  G  I  C  I  K  E  V  A  C  G  G  V  H  T  C  A  V  T  A  K  G  A  L  Y  A  W  G  G  G  Q  A  G  Q  L  G  V  G  P  L  N  G  F  F  S  C  K  L  N  E  S  E  M  M  L  R  N  I  P  V  L  V  V  P  D  G  V  Q  L  V  A  C  G  H  S  H  T  L  T  S  A  K  D  G  R  I  H  G  W  G  Y  N  C  Y  G  Q  A  A  N  E  K  S  T  Y  A  W  C  P  S  P  V  D  W :   C  V  G  A  V  R  K  L  A  A  G  G  G  H  S  A  V  L  T  D  A  C  S  L  K  E  L  C  E  F  R  L  A  E  T  V  N  P  S  N  A  S  V  V  E  D  V  A  S  R  T  G  A  D  A  L  A  R  L  C  E  R  L  R :   E  H  Y  Y  N  D  D  E  F  G  L  *  N  H  *  W  V  L  N  M  *  H  T  N  N  S  A  I  R  F  D  S  S  I  H  L  I  Q  *  R  K  Q  S  L  C  F  I  I  E  *  M  Y  S  T  F  Y  A  A  A  S  L  S  *  Y  N  K  T  S  T  Y  N  L  T  I  N  </second_frame>
            <third_frame>   E  L  A  V  L  S  S  L  H  P  I  S  L  E  L  K  L  Q  P  *  I  L  Q  I  F  R  I  K  L  L  P  L  F  L  D  F  I  :  *  E  I  K  W  I  L  M  K  Y  L  G  Y  L  G  L  *  V  *  Q  T  R  V  L  F  M  F  G  V  T  I  N  L  G  K  R  V  G  E  G  K  R  G  V  *  G  S  Q  N  S  F  L  Q  S  Y  L  D  A  Q  L  V  G  I  P  V  G  W  I  L  L  V  V  V  S  I  L  L  L  W  L  L  M  D  R  F  L  H  G  :  E  L  T  N  L  V  S  W  V  T  E  L  K  M  L  G  S  T  P  R  K  *  N  N  C  N  L  N  L  L  L  V  F  H  V  E  H  I  V  L  L  P  L  Q  N  H  V  K  T  M  V  A  C  Q  L  G  D  F  G  F  G  D  R  T  R :   D  P  I  T  H  D  S  F  G  V  P  F  L  L  L  R :   L  F  A  K  F  L  V  V  L  F  M  L  *  L  Y  Q  K  K  G  Y  Y  K  L  G  :  A  I  M  N  M  V  S  L  A  E  V  L  H  Q  K  A  F  K  A  L  V  *  L  M  D  M  L  D  F  L  M  K  P  L  N  L  *  R  L  P  K  C  H  A  G  S  T  I  L  Q  L  Y  Q  R  K  A  R   : S  I  R  G  D  W  G  A  W  D  N  L  A  I  V  H  F  S  Q  V  T  R  N  F  Y  L  G  V  *  F  P  L  M  A  Y  V  L  K  K  L  P  V  V  V  F  T  P  V  L  *  L  R  K  G  L  F  M  L  G  V  E  V  R  L  G  N  W  E  L  G  H  *  M  D  S  F  H  A  S  S  M  N  L  R  *  C  S  E  I  Y  Q  C  W  L  F  Q  M  V  C  N  S  L  H  V  V  I  H  T  H  L  L  L  L  K  T  D  E  Y  M  D  G  V  I  T  A  M  V  K  R  L  M  R  S  L  H  M  P  G  V  H  H  Q  L  I   : G  V  L  G  Q  S  E  N  W  L  L  V  V  D  I  Q  Q  C  *  L  M  H  A  L  *  K  S  C  V  N  L  G  L  Q  K  Q  *  I  H  P  M  L  Q  W  L  R  M  S  P  Q  E  Q  E  L  M  L  *  H  D  F  V  K  D  *   : G  S  I  T  T  M  M  M  S  L  V  C  E  I  I  D  G  C  *  I  C  N  I  P  I  I  Q  P  L  D  L  I  L  Q  S  I  *  Y  N  R  E  N  R  V  F  V  S  S  L  N  K  C  I  L  L  F  M  L  L  H  H  *  V  N  T  T  K  H  L  L  T  I  *  P  L  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0092M23.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51002" stop="51113"/>
                    <exon start="51232" stop="51495"/>
                    <exon start="52220" stop="52413"/>
                    <exon start="52499" stop="52546"/>
                    <exon start="52824" stop="52896"/>
                    <exon start="53113" stop="53284"/>
                    <exon start="54801" stop="55232"/>
                    <exon start="55319" stop="55510"/>
                    <exon start="55626" stop="55662"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1521</number_coding_nucleotides>
                  <number_encoded_amino_acids>507</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GIGSPVLPPSNFFGAQTATLDSSNFPDKITSIVSRFHLRNKMDIDEILGVSRPVSLTNKSAIYVWGYNQSGQTGRRGKERSLRIPKQLPPELFGCPAGGNSRWLDIACGREHTAAVASDGSLFTWGANEFGQLGDGTENARKHPKKVKQLQSEFVISVSCGAHCTVAIAEPRENDGSMSARRLWVWGQNQGSNYPRLFWGAFSPSTVIRQVSCGAVHVVALSEEGLLQAWGYNEYGQLGRGVTSEGLQGPCVINGYARFLDEAPELVKITQVSCGEYHTAAISEKGEVYTWGLGSVGQLGHCSLQSGDKELLPRRVVSLDGICIKEVACGGVHTCAVTAKGALYAWGGGQAGQLGVGPLNGFFSCKLNESEMMLRNIPVLVVPDGVQLVACGHSHTLTSAKDGRIHGWGYNCYGQAANEKSTYAWCPSPVDWCVGAVRKLAAGGGHSAVLTDACSLKELCEFRLAETVNPSNASVVEDVASRTGADALARLCERLREHYYNDDEFGL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="51030" e_stop="51495"/>
            <exon e_start="52220" e_stop="52413"/>
            <exon e_start="52499" e_stop="52546"/>
            <exon e_start="52824" e_stop="52896"/>
            <exon e_start="53113" e_stop="53284"/>
            <exon e_start="54801" e_stop="55232"/>
            <exon e_start="55319" e_stop="55510"/>
            <exon e_start="55626" e_stop="55852"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.792" e_score="0.938"/>
          <exon-intron don_prob="0.923" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.932" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.923" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.253" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.256" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.938">
            <gDNA_exon_boundary e_start="51030" e_stop="51495" e_length="466"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.792">
            <gDNA_intron_boundary i_start="51496" i_stop="52219" i_length="724"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="52220" e_stop="52413" e_length="194"/>
          </exon>
          <intron i_serial="2" don_prob="0.923" acc_prob="0.998">
            <gDNA_intron_boundary i_start="52414" i_stop="52498" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="52499" e_stop="52546" e_length="48"/>
          </exon>
          <intron i_serial="3" don_prob="0.981" acc_prob="0.932">
            <gDNA_intron_boundary i_start="52547" i_stop="52823" i_length="277"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="52824" e_stop="52896" e_length="73"/>
          </exon>
          <intron i_serial="4" don_prob="0.982" acc_prob="0.961">
            <gDNA_intron_boundary i_start="52897" i_stop="53112" i_length="216"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="53113" e_stop="53284" e_length="172"/>
          </exon>
          <intron i_serial="5" don_prob="0.923" acc_prob="0.990">
            <gDNA_intron_boundary i_start="53285" i_stop="54800" i_length="1516"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="54801" e_stop="55232" e_length="432"/>
          </exon>
          <intron i_serial="6" don_prob="0.253" acc_prob="0.978">
            <gDNA_intron_boundary i_start="55233" i_stop="55318" i_length="86"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="55319" e_stop="55510" e_length="192"/>
          </exon>
          <intron i_serial="7" don_prob="0.256" acc_prob="0.997">
            <gDNA_intron_boundary i_start="55511" i_stop="55625" i_length="115"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="55626" e_stop="55852" e_length="227"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51030" stop="51495"/>
              <exon start="52220" stop="52413"/>
              <exon start="52499" stop="52536"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51030" stop="51417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361795" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51246" stop="51495"/>
              <exon start="52220" stop="52413"/>
              <exon start="52499" stop="52546"/>
              <exon start="52824" stop="52896"/>
              <exon start="53113" stop="53263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345846" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52299" stop="52413"/>
              <exon start="52499" stop="52546"/>
              <exon start="52824" stop="52896"/>
              <exon start="53113" stop="53284"/>
              <exon start="54801" stop="55083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52299" stop="52413"/>
              <exon start="52499" stop="52546"/>
              <exon start="52824" stop="52896"/>
              <exon start="53113" stop="53284"/>
              <exon start="54801" stop="55069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327219" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54861" stop="55232"/>
              <exon start="55319" stop="55510"/>
              <exon start="55626" stop="55851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548928" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55009" stop="55232"/>
              <exon start="55319" stop="55510"/>
              <exon start="55626" stop="55794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55096" stop="55232"/>
              <exon start="55319" stop="55510"/>
              <exon start="55626" stop="55852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55096" stop="55232"/>
              <exon start="55319" stop="55510"/>
              <exon start="55626" stop="55851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55096" stop="55232"/>
              <exon start="55319" stop="55510"/>
              <exon start="55626" stop="55837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55097" stop="55232"/>
              <exon start="55319" stop="55510"/>
              <exon start="55626" stop="55700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284801" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55379" stop="55510"/>
              <exon start="55626" stop="55843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284803" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCAATTTCTTTGGAGCTCAAACTGCAACCTTAGATTCTTCAAATTTTCCGGATAAAATTACTTCCATTGTTTCTCGATTTCATCGTAAGTTTTTCACTGCTTACATTTATTTTTTAGAGTCAAAGTTAGGGACTTGGGTTCAAAAACAGTAGTTAAAGATCATAGTTTTTTTTTGTAATTTATGGTTCATTTTTGTTGATAGTGAGAAATAAAATGGATATTGATGAAATACTTGGGGTATCTCGGCCTGTGAGTTTGACAAACAAGAGTGCTATTTATGTTTGGGGTTACAATCAATCTGGGCAAACGGGTCGGAGAGGGAAAGAGAGGAGTTTGAGGATCCCAAAACAGCTTCCTCCAGAGCTATTTGGATGCCCAGCTGGTGGGAATTCCCGTTGGTTGGATATTGCTTGTGGTCGTGAGCATACTGCTGCTGTGGCTTCTGATGGATCGCTTTTTACATGGG : GAGCTAACGAATTTGGTCAGCTGGGTGACGGAACTGAAAATGCTAGGAAGCACCCCAAGAAAGTGAAACAATTGCAATCTGAATTTGTTATTAGTGTTTCATGTGGAGCACATTGTACTGTTGCCATTGCAGAACCACGTGAAAACGATGGTAGCATGTCAGCTCGGAGACTTTGGGTTTGGGGACAGAACCAG : GGATCCAATTACCCACGACTCTTTTGGGGTGCCTTTTCTCCTTCTACG : GTTATTCGCCAAGTTTCTTGTGGTGCTGTTCATGTTGTAGCTCTATCAGAAGAAGGGTTACTACAAGCTTGGG : GCTATAATGAATATGGTCAGCTTGGCAGAGGTGTTACATCAGAAGGCCTTCAAGGCCCTTGTGTAATTAATGGATATGCTAGATTTCTTGATGAAGCCCCTGAACTTGTGAAGATTACCCAAGTGTCATGCGGGGAGTACCATACTGCAGCTATATCAGAGAAAGGCGAGGT : CTATACGTGGGGATTGGGGAGCGTGGGACAACTTGGCCATTGTTCACTTCAGTCAGGTGACAAGGAACTTTTACCTAGGCGTGTAGTTTCCCTTGATGGCATATGTATTAAAGAAGTTGCCTGTGGTGGTGTTCACACCTGTGCTGTGACTGCGAAAGGGGCTCTTTATGCTTGGGGTGGAGGTCAGGCTGGGCAATTGGGAGTTGGGCCATTAAATGGATTCTTTTCATGCAAGCTCAATGAATCTGAGATGATGCTCCGAAATATACCAGTGTTGGTTGTTCCAGATGGTGTGCAACTCGTTGCATGTGGTCATTCACACACACTTACTTCTGCTAAAGACGGACGAATACATGGATGGGGTTATAACTGCTATGGTCAAGCGGCTAATGAGAAGTCTACATATGCCTGGTGTCCATCACCAGTTGATTG : GTGTGTTGGGGCAGTCCGAAAATTGGCTGCTGGTGGTGGACATTCAGCAGTGCTGACTGATGCATGCTCTCTAAAAGAGCTGTGTGAATTTAGGCTTGCAGAAACAGTGAATCCATCCAATGCTTCAGTGGTTGAGGATGTCGCCTCAAGAACAGGAGCTGATGCTTTAGCACGACTTTGTGAAAGATTGAG : GGAGCATTACTACAATGATGATGAGTTTGGTCTGTGAAATCATTGATGGGTGTTAAATATGTAACATACCAATAATTCAGCCATTAGATTTGATTCTTCAATCCATCTAATACAATAGAGAAAACAGAGTCTTTGTTTCATCATTGAATAAATGTATTCTACTTTTTATGCTGCTGCATCATTAAGTTAATACAACAAAACATCTACTTACAATTTAACCATTAATT</gDNA_template>
            <first_frame> P  I  S  L  E  L  K  L  Q  P  *  I  L  Q  I  F  R  I  K  L  L  P  L  F  L  D  F  I  V  S  F  S  L  L  T  F  I  F  *  S  Q  S  *  G  L  G  F  K  N  S  S  *  R  S  *  F  F  F  V  I  Y  G  S  F  L  L  I  V  R  N  K  M  D  I  D  E  I  L  G  V  S  R  P  V  S  L  T  N  K  S  A  I  Y  V  W  G  Y  N  Q  S  G  Q  T  G  R  R  G  K  E  R  S  L  R  I  P  K  Q  L  P  P  E  L  F  G  C  P  A  G  G  N  S  R  W  L  D  I  A  C  G  R  E  H  T  A  A  V  A  S  D  G  S  L  F  T  W   : G  A  N  E  F  G  Q  L  G  D  G  T  E  N  A  R  K  H  P  K  K  V  K  Q  L  Q  S  E  F  V  I  S  V  S  C  G  A  H  C  T  V  A  I  A  E  P  R  E  N  D  G  S  M  S  A  R  R  L  W  V  W  G  Q  N  Q  :  G  S  N  Y  P  R  L  F  W  G  A  F  S  P  S  T  :  V  I  R  Q  V  S  C  G  A  V  H  V  V  A  L  S  E  E  G  L  L  Q  A  W   : G  Y  N  E  Y  G  Q  L  G  R  G  V  T  S  E  G  L  Q  G  P  C  V  I  N  G  Y  A  R  F  L  D  E  A  P  E  L  V  K  I  T  Q  V  S  C  G  E  Y  H  T  A  A  I  S  E  K  G  E  V :   Y  T  W  G  L  G  S  V  G  Q  L  G  H  C  S  L  Q  S  G  D  K  E  L  L  P  R  R  V  V  S  L  D  G  I  C  I  K  E  V  A  C  G  G  V  H  T  C  A  V  T  A  K  G  A  L  Y  A  W  G  G  G  Q  A  G  Q  L  G  V  G  P  L  N  G  F  F  S  C  K  L  N  E  S  E  M  M  L  R  N  I  P  V  L  V  V  P  D  G  V  Q  L  V  A  C  G  H  S  H  T  L  T  S  A  K  D  G  R  I  H  G  W  G  Y  N  C  Y  G  Q  A  A  N  E  K  S  T  Y  A  W  C  P  S  P  V  D  W :   C  V  G  A  V  R  K  L  A  A  G  G  G  H  S  A  V  L  T  D  A  C  S  L  K  E  L  C  E  F  R  L  A  E  T  V  N  P  S  N  A  S  V  V  E  D  V  A  S  R  T  G  A  D  A  L  A  R  L  C  E  R  L  R :   E  H  Y  Y  N  D  D  E  F  G  L  *  N  H  *  W  V  L  N  M  *  H  T  N  N  S  A  I  R  F  D  S  S  I  H  L  I  Q  *  R  K  Q  S  L  C  F  I  I  E  *  M  Y  S  T  F  Y  A  A  A  S  L  S  *  Y  N  K  T  S  T  Y  N  L  T  I  N  </first_frame>
            <second_frame>  Q  F  L  W  S  S  N  C  N  L  R  F  F  K  F  S  G  *  N  Y  F  H  C  F  S  I  S  S  *  V  F  H  C  L  H  L  F  F  R  V  K  V  R  D  L  G  S  K  T  V  V  K  D  H  S  F  F  L  *  F  M  V  H  F  C  *  *  *  E  I  K  W  I  L  M  K  Y  L  G  Y  L  G  L  *  V  *  Q  T  R  V  L  F  M  F  G  V  T  I  N  L  G  K  R  V  G  E  G  K  R  G  V  *  G  S  Q  N  S  F  L  Q  S  Y  L  D  A  Q  L  V  G  I  P  V  G  W  I  L  L  V  V  V  S  I  L  L  L  W  L  L  M  D  R  F  L  H  G  :  E  L  T  N  L  V  S  W  V  T  E  L  K  M  L  G  S  T  P  R  K  *  N  N  C  N  L  N  L  L  L  V  F  H  V  E  H  I  V  L  L  P  L  Q  N  H  V  K  T  M  V  A  C  Q  L  G  D  F  G  F  G  D  R  T  R :   D  P  I  T  H  D  S  F  G  V  P  F  L  L  L  R :   L  F  A  K  F  L  V  V  L  F  M  L  *  L  Y  Q  K  K  G  Y  Y  K  L  G  :  A  I  M  N  M  V  S  L  A  E  V  L  H  Q  K  A  F  K  A  L  V  *  L  M  D  M  L  D  F  L  M  K  P  L  N  L  *  R  L  P  K  C  H  A  G  S  T  I  L  Q  L  Y  Q  R  K  A  R   : S  I  R  G  D  W  G  A  W  D  N  L  A  I  V  H  F  S  Q  V  T  R  N  F  Y  L  G  V  *  F  P  L  M  A  Y  V  L  K  K  L  P  V  V  V  F  T  P  V  L  *  L  R  K  G  L  F  M  L  G  V  E  V  R  L  G  N  W  E  L  G  H  *  M  D  S  F  H  A  S  S  M  N  L  R  *  C  S  E  I  Y  Q  C  W  L  F  Q  M  V  C  N  S  L  H  V  V  I  H  T  H  L  L  L  L  K  T  D  E  Y  M  D  G  V  I  T  A  M  V  K  R  L  M  R  S  L  H  M  P  G  V  H  H  Q  L  I   : G  V  L  G  Q  S  E  N  W  L  L  V  V  D  I  Q  Q  C  *  L  M  H  A  L  *  K  S  C  V  N  L  G  L  Q  K  Q  *  I  H  P  M  L  Q  W  L  R  M  S  P  Q  E  Q  E  L  M  L  *  H  D  F  V  K  D  *   : G  S  I  T  T  M  M  M  S  L  V  C  E  I  I  D  G  C  *  I  C  N  I  P  I  I  Q  P  L  D  L  I  L  Q  S  I  *  Y  N  R  E  N  R  V  F  V  S  S  L  N  K  C  I  L  L  F  M  L  L  H  H  *  V  N  T  T  K  H  L  L  T  I  *  P  L  I </second_frame>
            <third_frame>   N  F  F  G  A  Q  T  A  T  L  D  S  S  N  F  P  D  K  I  T  S  I  V  S  R  F  H  R  K  F  F  T  A  Y  I  Y  F  L  E  S  K  L  G  T  W  V  Q  K  Q  *  L  K  I  I  V  F  F  C  N  L  W  F  I  F  V  D  S  E  K  *  N  G  Y  *  *  N  T  W  G  I  S  A  C  E  F  D  K  Q  E  C  Y  L  C  L  G  L  Q  S  I  W  A  N  G  S  E  R  E  R  E  E  F  E  D  P  K  T  A  S  S  R  A  I  W  M  P  S  W  W  E  F  P  L  V  G  Y  C  L  W  S  *  A  Y  C  C  C  G  F  *  W  I  A  F  Y  M  G :   S  *  R  I  W  S  A  G  *  R  N  *  K  C  *  E  A  P  Q  E  S  E  T  I  A  I  *  I  C  Y  *  C  F  M  W  S  T  L  Y  C  C  H  C  R  T  T  *  K  R  W  *  H  V  S  S  E  T  L  G  L  G  T  E  P   : G  I  Q  L  P  T  T  L  L  G  C  L  F  S  F  Y   : G  Y  S  P  S  F  L  W  C  C  S  C  C  S  S  I  R  R  R  V  T  T  S  L  G :   L  *  *  I  W  S  A  W  Q  R  C  Y  I  R  R  P  S  R  P  L  C  N  *  W  I  C  *  I  S  *  *  S  P  *  T  C  E  D  Y  P  S  V  M  R  G  V  P  Y  C  S  Y  I  R  E  R  R  G  :  L  Y  V  G  I  G  E  R  G  T  T  W  P  L  F  T  S  V  R  *  Q  G  T  F  T  *  A  C  S  F  P  *  W  H  M  Y  *  R  S  C  L  W  W  C  S  H  L  C  C  D  C  E  R  G  S  L  C  L  G  W  R  S  G  W  A  I  G  S  W  A  I  K  W  I  L  F  M  Q  A  Q  *  I  *  D  D  A  P  K  Y  T  S  V  G  C  S  R  W  C  A  T  R  C  M  W  S  F  T  H  T  Y  F  C  *  R  R  T  N  T  W  M  G  L  *  L  L  W  S  S  G  *  *  E  V  Y  I  C  L  V  S  I  T  S  *  L  :  V  C  W  G  S  P  K  I  G  C  W  W  W  T  F  S  S  A  D  *  C  M  L  S  K  R  A  V  *  I  *  A  C  R  N  S  E  S  I  Q  C  F  S  G  *  G  C  R  L  K  N  R  S  *  C  F  S  T  T  L  *  K  I  E  :  G  A  L  L  Q  *  *  *  V  W  S  V  K  S  L  M  G  V  K  Y  V  T  Y  Q  *  F  S  H  *  I  *  F  F  N  P  S  N  T  I  E  K  T  E  S  L  F  H  H  *  I  N  V  F  Y  F  L  C  C  C  I  I  K  L  I  Q  Q  N  I  Y  L  Q  F  N  H  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0092M23.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51195" stop="51495"/>
                    <exon start="52220" stop="52413"/>
                    <exon start="52499" stop="52546"/>
                    <exon start="52824" stop="52896"/>
                    <exon start="53113" stop="53284"/>
                    <exon start="54801" stop="55232"/>
                    <exon start="55319" stop="55510"/>
                    <exon start="55626" stop="55662"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1446</number_coding_nucleotides>
                  <number_encoded_amino_acids>482</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFFVIYGSFLLIVRNKMDIDEILGVSRPVSLTNKSAIYVWGYNQSGQTGRRGKERSLRIPKQLPPELFGCPAGGNSRWLDIACGREHTAAVASDGSLFTWGANEFGQLGDGTENARKHPKKVKQLQSEFVISVSCGAHCTVAIAEPRENDGSMSARRLWVWGQNQGSNYPRLFWGAFSPSTVIRQVSCGAVHVVALSEEGLLQAWGYNEYGQLGRGVTSEGLQGPCVINGYARFLDEAPELVKITQVSCGEYHTAAISEKGEVYTWGLGSVGQLGHCSLQSGDKELLPRRVVSLDGICIKEVACGGVHTCAVTAKGALYAWGGGQAGQLGVGPLNGFFSCKLNESEMMLRNIPVLVVPDGVQLVACGHSHTLTSAKDGRIHGWGYNCYGQAANEKSTYAWCPSPVDWCVGAVRKLAAGGGHSAVLTDACSLKELCEFRLAETVNPSNASVVEDVASRTGADALARLCERLREHYYNDDEFGL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="60726" PGL_stop="55916"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60726" e_stop="60468"/>
            <exon e_start="57907" e_stop="57829"/>
            <exon e_start="57089" e_stop="57025"/>
            <exon e_start="56861" e_stop="56762"/>
            <exon e_start="56682" e_stop="56641"/>
            <exon e_start="56512" e_stop="56471"/>
            <exon e_start="56384" e_stop="56278"/>
            <exon e_start="56162" e_stop="55916"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="60726" e_stop="60468" e_length="259"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.971">
            <gDNA_intron_boundary i_start="60467" i_stop="57908" i_length="2560"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="57907" e_stop="57829" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="57828" i_stop="57090" i_length="739"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="57089" e_stop="57025" e_length="65"/>
          </exon>
          <intron i_serial="3" don_prob="0.971" acc_prob="0.999">
            <gDNA_intron_boundary i_start="57024" i_stop="56862" i_length="163"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="56861" e_stop="56762" e_length="100"/>
          </exon>
          <intron i_serial="4" don_prob="0.985" acc_prob="0.985">
            <gDNA_intron_boundary i_start="56761" i_stop="56683" i_length="79"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="56682" e_stop="56641" e_length="42"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.993">
            <gDNA_intron_boundary i_start="56640" i_stop="56513" i_length="128"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="56512" e_stop="56471" e_length="42"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.963">
            <gDNA_intron_boundary i_start="56470" i_stop="56385" i_length="86"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="56384" e_stop="56278" e_length="107"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="56277" i_stop="56163" i_length="115"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="56162" e_stop="55916" e_length="247"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60726" stop="60468"/>
              <exon start="57907" stop="57829"/>
              <exon start="57089" stop="57025"/>
              <exon start="56861" stop="56762"/>
              <exon start="56682" stop="56641"/>
              <exon start="56512" stop="56471"/>
              <exon start="56384" stop="56278"/>
              <exon start="56162" stop="55916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747421" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60726" stop="60468"/>
              <exon start="57907" stop="57829"/>
              <exon start="57089" stop="57025"/>
              <exon start="56861" stop="56762"/>
              <exon start="56682" stop="56641"/>
              <exon start="56512" stop="56471"/>
              <exon start="56384" stop="56319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60726" stop="60468"/>
              <exon start="57907" stop="57829"/>
              <exon start="57089" stop="57025"/>
              <exon start="56861" stop="56762"/>
              <exon start="56682" stop="56641"/>
              <exon start="56512" stop="56471"/>
              <exon start="56384" stop="56376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394025" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60725" stop="60468"/>
              <exon start="57907" stop="57829"/>
              <exon start="57089" stop="57025"/>
              <exon start="56861" stop="56762"/>
              <exon start="56682" stop="56641"/>
              <exon start="56512" stop="56485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305490" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTCTATCTATGCTAGGTAGCTTATATGATTTAATAGTTCGATTAATTTAAATACGCATTAAAGATAGAGGATGGGAAGAGGTAGGGTAGAGTTGAAACGGATCGAGAACAAAATAAGCAGACAAGTAACATTCTCAAAGAGACGATCTGGATTATTGAAGAAAGCTAATGAGATCTCAGTATTATGTGATGCTGATGTTGCATTGATTGTGTTTTCTACCAAAGGCAAACTTTTCGAGTATTCCTCAAATGACTCAAG : TATGGAAAGTATTCTTGAAAGATATGAAAGATGCTCATATGCAGAGAGACAGATGAATGCTAATGATTCTGATCCCAAG : GAAAATTGGAGTGTGGAGTATCCGAAGCTCATGTCAAGAATTGAACTTTTACAAAGAAATATAAG : GCATTACATGGGTCAGGATCTGGACCCTCTCAGTTTGCGTGAGCTCCAGAGTATAGAGCAACAGATTGATACTTCATTAAAGAGAATTAGAAGCAGGAAG : AATCAACTGATGCACGAGTCCATTTCTGAGCTGCAGAAAAAG : GAGAAAGCGCTCCAAGAACAAAACAACTTGATTACTAAGAAG : CTAAAAGAAAATGAGAAGACACAACCCAACTCATCAGGCCAAAACTCAGCAACAGTTCATGTGTTTCCATCACATTCTCACCACCAACTTCCTAACCTTACAATTGG : GGGGGCTTTTGGAGGAATGAACAGAGATGGATCGGGTCAGGCTCATCACTATCCGGGTTCAAATAACAATAATAATAATTCCTCATTGATACCGCCATGGATGCTCCGCCACGTCAGCAACGAAGGATGAAATAATATTCCGGAGAGTATAATTAATTAATTGTATATGTTTTGTTCCAAACAATATTAATCAACTTTCCTGTTTGTGATGTATAATTAGCTTAAGCTAATAAAACTTTTCATCCTT</gDNA_template>
            <first_frame> S  L  S  M  L  G  S  L  Y  D  L  I  V  R  L  I  *  I  R  I  K  D  R  G  W  E  E  V  G  *  S  *  N  G  S  R  T  K  *  A  D  K  *  H  S  Q  R  D  D  L  D  Y  *  R  K  L  M  R  S  Q  Y  Y  V  M  L  M  L  H  *  L  C  F  L  P  K  A  N  F  S  S  I  P  Q  M  T  Q   : V  W  K  V  F  L  K  D  M  K  D  A  H  M  Q  R  D  R  *  M  L  M  I  L  I  P  R :   K  I  G  V  W  S  I  R  S  S  C  Q  E  L  N  F  Y  K  E  I  *   : G  I  T  W  V  R  I  W  T  L  S  V  C  V  S  S  R  V  *  S  N  R  L  I  L  H  *  R  E  L  E  A  G  R :   I  N  *  C  T  S  P  F  L  S  C  R  K  R :   R  K  R  S  K  N  K  T  T  *  L  L  R  S :   *  K  K  M  R  R  H  N  P  T  H  Q  A  K  T  Q  Q  Q  F  M  C  F  H  H  I  L  T  T  N  F  L  T  L  Q  L   : G  G  L  L  E  E  *  T  E  M  D  R  V  R  L  I  T  I  R  V  Q  I  T  I  I  I  I  P  H  *  Y  R  H  G  C  S  A  T  S  A  T  K  D  E  I  I  F  R  R  V  *  L  I  N  C  I  C  F  V  P  N  N  I  N  Q  L  S  C  L  *  C  I  I  S  L  S  *  *  N  F  S  S   </first_frame>
            <second_frame>  L  Y  L  C  *  V  A  Y  M  I  *  *  F  D  *  F  K  Y  A  L  K  I  E  D  G  K  R  *  G  R  V  E  T  D  R  E  Q  N  K  Q  T  S  N  I  L  K  E  T  I  W  I  I  E  E  S  *  *  D  L  S  I  M  *  C  *  C  C  I  D  C  V  F  Y  Q  R  Q  T  F  R  V  F  L  K  *  L  K  :  Y  G  K  Y  S  *  K  I  *  K  M  L  I  C  R  E  T  D  E  C  *  *  F  *  S  Q   : G  K  L  E  C  G  V  S  E  A  H  V  K  N  *  T  F  T  K  K  Y  K  :  A  L  H  G  S  G  S  G  P  S  Q  F  A  *  A  P  E  Y  R  A  T  D  *  Y  F  I  K  E  N  *  K  Q  E   : E  S  T  D  A  R  V  H  F  *  A  A  E  K   : G  E  S  A  P  R  T  K  Q  L  D  Y  *  E   : A  K  R  K  *  E  D  T  T  Q  L  I  R  P  K  L  S  N  S  S  C  V  S  I  T  F  S  P  P  T  S  *  P  Y  N  W  :  G  G  F  W  R  N  E  Q  R  W  I  G  S  G  S  S  L  S  G  F  K  *  Q  *  *  *  F  L  I  D  T  A  M  D  A  P  P  R  Q  Q  R  R  M  K  *  Y  S  G  E  Y  N  *  L  I  V  Y  V  L  F  Q  T  I  L  I  N  F  P  V  C  D  V  *  L  A  *  A  N  K  T  F  H  P  </second_frame>
            <third_frame>   S  I  Y  A  R  *  L  I  *  F  N  S  S  I  N  L  N  T  H  *  R  *  R  M  G  R  G  R  V  E  L  K  R  I  E  N  K  I  S  R  Q  V  T  F  S  K  R  R  S  G  L  L  K  K  A  N  E  I  S  V  L  C  D  A  D  V  A  L  I  V  F  S  T  K  G  K  L  F  E  Y  S  S  N  D  S  S :   M  E  S  I  L  E  R  Y  E  R  C  S  Y  A  E  R  Q  M  N  A  N  D  S  D  P  K  :  E  N  W  S  V  E  Y  P  K  L  M  S  R  I  E  L  L  Q  R  N  I  R :   H  Y  M  G  Q  D  L  D  P  L  S  L  R  E  L  Q  S  I  E  Q  Q  I  D  T  S  L  K  R  I  R  S  R  K  :  N  Q  L  M  H  E  S  I  S  E  L  Q  K  K  :  E  K  A  L  Q  E  Q  N  N  L  I  T  K  K  :  L  K  E  N  E  K  T  Q  P  N  S  S  G  Q  N  S  A  T  V  H  V  F  P  S  H  S  H  H  Q  L  P  N  L  T  I  G :   G  A  F  G  G  M  N  R  D  G  S  G  Q  A  H  H  Y  P  G  S  N  N  N  N  N  N  S  S  L  I  P  P  W  M  L  R  H  V  S  N  E  G  *  N  N  I  P  E  S  I  I  N  *  L  Y  M  F  C  S  K  Q  Y  *  S  T  F  L  F  V  M  Y  N  *  L  K  L  I  K  L  F  I  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0092M23.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60658" stop="60468"/>
                    <exon start="57907" stop="57829"/>
                    <exon start="57089" stop="57025"/>
                    <exon start="56861" stop="56762"/>
                    <exon start="56682" stop="56641"/>
                    <exon start="56512" stop="56471"/>
                    <exon start="56384" stop="56278"/>
                    <exon start="56162" stop="56033"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>753</number_coding_nucleotides>
                  <number_encoded_amino_acids>251</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RMGRGRVELKRIENKISRQVTFSKRRSGLLKKANEISVLCDADVALIVFSTKGKLFEYSSNDSSMESILERYERCSYAERQMNANDSDPKENWSVEYPKLMSRIELLQRNIRHYMGQDLDPLSLRELQSIEQQIDTSLKRIRSRKNQLMHESISELQKKEKALQEQNNLITKKLKENEKTQPNSSGQNSATVHVFPSHSHHQLPNLTIGGAFGGMNRDGSGQAHHYPGSNNNNNNSSLIPPWMLRHVSNEG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="58421" e_stop="57829"/>
            <exon e_start="57089" e_stop="57025"/>
            <exon e_start="56861" e_stop="56762"/>
            <exon e_start="56682" e_stop="56641"/>
            <exon e_start="56512" e_stop="56483"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="0.997"/>
          <exon-intron don_prob="0.971" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="58421" e_stop="57829" e_length="593"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="57828" i_stop="57090" i_length="739"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="57089" e_stop="57025" e_length="65"/>
          </exon>
          <intron i_serial="2" don_prob="0.971" acc_prob="0.999">
            <gDNA_intron_boundary i_start="57024" i_stop="56862" i_length="163"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="56861" e_stop="56762" e_length="100"/>
          </exon>
          <intron i_serial="3" don_prob="0.985" acc_prob="0.985">
            <gDNA_intron_boundary i_start="56761" i_stop="56683" i_length="79"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="56682" e_stop="56641" e_length="42"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.993">
            <gDNA_intron_boundary i_start="56640" i_stop="56513" i_length="128"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="56512" e_stop="56483" e_length="30"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58421" stop="57829"/>
              <exon start="57089" stop="57025"/>
              <exon start="56861" stop="56762"/>
              <exon start="56682" stop="56641"/>
              <exon start="56512" stop="56483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689189" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58420" stop="57946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324579" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAAAGCAAGATGATGTTTAACTACGTACTTACCTTCAACCCTTTACCACGATCTCGATATCCTCCTATCTAAGATCATATTCCGTAAATTCATGCATGTGTGTCTAATTAATCACCCTTATCCAATATTTTTTTAGTCTACCTCTACCCCTCTTTAAACCCACCATTGTCGATTTCTCACACGTTCTCACTTGGGCATTTGCACATCTCTACGTCACAGACTCAATCATCTCAGCTTCGCTTCTCTCATCTTAGCCACCATGGATGCCACTCTAATAAATAGATCTATCTCTTTCATTTTGAATTGATATACCTGACCTGATTAAAATGCAAAAAACTTCTCATTCTAAAATAACCTAGTTAGAATCCTATTTAAGTAATATTGTATATCAATGGAAAAATTACCAACTGTAAATGAAAAAATAAAATAAAATTTTATACTATTAGGTCATGTAGTTAAGTTCAATATGCTTACTGGCTTATAATTTTTTTTTTGTTTATTTTTTGATTTTAGTATGGAAAGTATTCTTGAAAGATATGAAAGATGCTCATATGCAGAGAGACAGATGAATGCTAATGATTCTGATCCCAAG : GAAAATTGGAGTGTGGAGTATCCGAAGCTCATGTCAAGAATTGAACTTTTACAAAGAAATATAAG : GCATTACATGGGTCAGGATCTGGACCCTCTCAGTTTGCGTGAGCTCCAGAGTATAGAGCAACAGATTGATACTTCATTAAAGAGAATTAGAAGCAGGAAG : AATCAACTGATGCACGAGTCCATTTCTGAGCTGCAGAAAAAG : GAGAAAGCGCTCCAAGAACAAAACAACTTG</gDNA_template>
            <first_frame> G  K  Q  D  D  V  *  L  R  T  Y  L  Q  P  F  T  T  I  S  I  S  S  Y  L  R  S  Y  S  V  N  S  C  M  C  V  *  L  I  T  L  I  Q  Y  F  F  S  L  P  L  P  L  F  K  P  T  I  V  D  F  S  H  V  L  T  W  A  F  A  H  L  Y  V  T  D  S  I  I  S  A  S  L  L  S  S  *  P  P  W  M  P  L  *  *  I  D  L  S  L  S  F  *  I  D  I  P  D  L  I  K  M  Q  K  T  S  H  S  K  I  T  *  L  E  S  Y  L  S  N  I  V  Y  Q  W  K  N  Y  Q  L  *  M  K  K  *  N  K  I  L  Y  Y  *  V  M  *  L  S  S  I  C  L  L  A  Y  N  F  F  F  V  Y  F  L  I  L  V  W  K  V  F  L  K  D  M  K  D  A  H  M  Q  R  D  R  *  M  L  M  I  L  I  P  R :   K  I  G  V  W  S  I  R  S  S  C  Q  E  L  N  F  Y  K  E  I  *   : G  I  T  W  V  R  I  W  T  L  S  V  C  V  S  S  R  V  *  S  N  R  L  I  L  H  *  R  E  L  E  A  G  R :   I  N  *  C  T  S  P  F  L  S  C  R  K  R :   R  K  R  S  K  N  K  T  T   </first_frame>
            <second_frame>  E  S  K  M  M  F  N  Y  V  L  T  F  N  P  L  P  R  S  R  Y  P  P  I  *  D  H  I  P  *  I  H  A  C  V  S  N  *  S  P  L  S  N  I  F  L  V  Y  L  Y  P  S  L  N  P  P  L  S  I  S  H  T  F  S  L  G  H  L  H  I  S  T  S  Q  T  Q  S  S  Q  L  R  F  S  H  L  S  H  H  G  C  H  S  N  K  *  I  Y  L  F  H  F  E  L  I  Y  L  T  *  L  K  C  K  K  L  L  I  L  K  *  P  S  *  N  P  I  *  V  I  L  Y  I  N  G  K  I  T  N  C  K  *  K  N  K  I  K  F  Y  T  I  R  S  C  S  *  V  Q  Y  A  Y  W  L  I  I  F  F  L  F  I  F  *  F  *  Y  G  K  Y  S  *  K  I  *  K  M  L  I  C  R  E  T  D  E  C  *  *  F  *  S  Q   : G  K  L  E  C  G  V  S  E  A  H  V  K  N  *  T  F  T  K  K  Y  K  :  A  L  H  G  S  G  S  G  P  S  Q  F  A  *  A  P  E  Y  R  A  T  D  *  Y  F  I  K  E  N  *  K  Q  E   : E  S  T  D  A  R  V  H  F  *  A  A  E  K   : G  E  S  A  P  R  T  K  Q  L  </second_frame>
            <third_frame>   K  A  R  *  C  L  T  T  Y  L  P  S  T  L  Y  H  D  L  D  I  L  L  S  K  I  I  F  R  K  F  M  H  V  C  L  I  N  H  P  Y  P  I  F  F  *  S  T  S  T  P  L  *  T  H  H  C  R  F  L  T  R  S  H  L  G  I  C  T  S  L  R  H  R  L  N  H  L  S  F  A  S  L  I  L  A  T  M  D  A  T  L  I  N  R  S  I  S  F  I  L  N  *  Y  T  *  P  D  *  N  A  K  N  F  S  F  *  N  N  L  V  R  I  L  F  K  *  Y  C  I  S  M  E  K  L  P  T  V  N  E  K  I  K  *  N  F  I  L  L  G  H  V  V  K  F  N  M  L  T  G  L  *  F  F  F  C  L  F  F  D  F  S  M  E  S  I  L  E  R  Y  E  R  C  S  Y  A  E  R  Q  M  N  A  N  D  S  D  P  K  :  E  N  W  S  V  E  Y  P  K  L  M  S  R  I  E  L  L  Q  R  N  I  R :   H  Y  M  G  Q  D  L  D  P  L  S  L  R  E  L  Q  S  I  E  Q  Q  I  D  T  S  L  K  R  I  R  S  R  K  :  N  Q  L  M  H  E  S  I  S  E  L  Q  K  K  :  E  K  A  L  Q  E  Q  N  N  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0092M23.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57936" stop="57829"/>
                    <exon start="57089" stop="57025"/>
                    <exon start="56861" stop="56762"/>
                    <exon start="56682" stop="56641"/>
                    <exon start="56512" stop="56483"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>345</number_coding_nucleotides>
                  <number_encoded_amino_acids>115</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFFCLFFDFSMESILERYERCSYAERQMNANDSDPKENWSVEYPKLMSRIELLQRNIRHYMGQDLDPLSLRELQSIEQQIDTSLKRIRSRKNQLMHESISELQKKEKALQEQNNL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="74617" PGL_stop="70058"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74617" e_stop="74096"/>
            <exon e_start="72627" e_stop="72549"/>
            <exon e_start="72310" e_stop="72246"/>
            <exon e_start="71381" e_stop="71282"/>
            <exon e_start="71203" e_stop="71162"/>
            <exon e_start="71083" e_stop="71042"/>
            <exon e_start="70741" e_stop="70602"/>
            <exon e_start="70383" e_stop="70058"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.917" e_score="0.998"/>
          <exon-intron don_prob="0.840" acc_prob="0.890" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.604" e_score="1.000"/>
          <exon-intron don_prob="0.943" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="74617" e_stop="74096" e_length="522"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.917">
            <gDNA_intron_boundary i_start="74095" i_stop="72628" i_length="1468"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="72627" e_stop="72549" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="0.840" acc_prob="0.890">
            <gDNA_intron_boundary i_start="72548" i_stop="72311" i_length="238"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="72310" e_stop="72246" e_length="65"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.998">
            <gDNA_intron_boundary i_start="72245" i_stop="71382" i_length="864"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="71381" e_stop="71282" e_length="100"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.604">
            <gDNA_intron_boundary i_start="71281" i_stop="71204" i_length="78"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="71203" e_stop="71162" e_length="42"/>
          </exon>
          <intron i_serial="5" don_prob="0.943" acc_prob="0.983">
            <gDNA_intron_boundary i_start="71161" i_stop="71084" i_length="78"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="71083" e_stop="71042" e_length="42"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="0.994">
            <gDNA_intron_boundary i_start="71041" i_stop="70742" i_length="300"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
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              <exon start="70383" stop="70093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72627" stop="72549"/>
              <exon start="72310" stop="72246"/>
              <exon start="71381" stop="71282"/>
              <exon start="71203" stop="71162"/>
              <exon start="71083" stop="71042"/>
              <exon start="70741" stop="70602"/>
              <exon start="70383" stop="70093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557053" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72577" stop="72549"/>
              <exon start="72310" stop="72246"/>
              <exon start="71381" stop="71282"/>
              <exon start="71203" stop="71162"/>
              <exon start="71083" stop="71042"/>
              <exon start="70741" stop="70602"/>
              <exon start="70383" stop="70224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72577" stop="72549"/>
              <exon start="72310" stop="72246"/>
              <exon start="71381" stop="71282"/>
              <exon start="71203" stop="71162"/>
              <exon start="71083" stop="71042"/>
              <exon start="70741" stop="70648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240971" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71303" stop="71282"/>
              <exon start="71203" stop="71162"/>
              <exon start="71083" stop="71042"/>
              <exon start="70741" stop="70602"/>
              <exon start="70383" stop="70063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553876" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71203" stop="71162"/>
              <exon start="71083" stop="71042"/>
              <exon start="70741" stop="70602"/>
              <exon start="70383" stop="70063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554189" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70632" stop="70602"/>
              <exon start="70383" stop="70063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70632" stop="70602"/>
              <exon start="70383" stop="70063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220025" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70332" stop="70058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252375" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCCTAAAGCTCTAAGGTATCTAAATTTGGAGTACCTAAGCAAATCCTAAAGTTAAAACAATGAATCCCTAAAGAAGATAGGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA : TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG : CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG : ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGG : ACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAG : GAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAG : ATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGG : GTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCCCAAAACGTGAATGGTATGATACCTGGTTGGATGCTGTGAATGAAAAAGTCCTTTATCTTCAGCTTTGCATAAAAGCATATGAAGTATATTTCTATAATAATAAAGGAAAACTCCAGTACCTTTATTTTCAGCAAAATACCCTAATTAAGGTGAACGTTGTGAACCATTTTCTTTGCATAAAAACAAACTTGTTTGCTTGGAAATGTTTTATTTTATTCAAATCATAATGTGGATGTTGCTGAATATGATGATTATTAGCATCTTTCATGTGAATTCA</gDNA_template>
            <first_frame> T  L  K  L  *  G  I  *  I  W  S  T  *  A  N  P  K  V  K  T  M  N  P  *  R  R  *  E  E  M  P  *  I  K  T  T  H  V  H  F  F  S  L  *  T  L  K  F  N  Q  N  K  K  Q  K  L  I  R  I  L  S  F  F  L  C  V  C  V  C  L  A  R  V  C  I  S  F  T  I  L  V  V  S  V  G  E  K  R  G  S  K  S  *  P  R  E  E  I  S  E  K  I  K  *  K  K  I  I  R  G  R  R  D  G  *  R  K  S  *  A  E  E  D  R  K  Q  D  K  *  T  S  H  F  C  K  E  E  K  W  I  A  Q  K  S  L  *  T  I  C  A  L  *  C  *  S  C  S  T  R  F  L  *  S  W  K  T  L  *  I  L  Q  H  K  Q  :  Y  A  Q  N  T  *  *  V  P  K  V  Q  L  W  N  I  G  S  Q  S  I  N  Q  R  *  *   : A  K  Q  L  *  G  I  L  E  T  Q  S  Q  I  *  V  A  A  A  I  S  K  :  T  P  S  W  R  *  V  G  A  S  D  Y  R  *  S  *  A  S  *  S  P  T  R  Y  F  P  Q  T  H  *  V  H  Q   : D  T  N  D  A  *  S  A  F  *  S  S  N  *   : G  E  I  V  E  *  G  *  Q  G  S  *  K  K   : D  G  R  N  I  C  *  K  Q  H  A  T  S  M  G  W  W  *  A  K  S  Q  L  W  S  A  A  T  S  S  I  S  G  F  L  P  T  S  R  V  Q  L  F  L  A  N  W  :  V  R  S  N  N  N  F  K  P  N  N  S  S  N  K  C  P  K  R  E  W  Y  D  T  W  L  D  A  V  N  E  K  V  L  Y  L  Q  L  C  I  K  A  Y  E  V  Y  F  Y  N  N  K  G  K  L  Q  Y  L  Y  F  Q  Q  N  T  L  I  K  V  N  V  V  N  H  F  L  C  I  K  T  N  L  F  A  W  K  C  F  I  L  F  K  S  *  C  G  C  C  *  I  *  *  L  L  A  S  F  M  *  I   </first_frame>
            <second_frame>  P  *  S  S  K  V  S  K  F  G  V  P  K  Q  I  L  K  L  K  Q  *  I  P  K  E  D  R  K  K  C  H  R  *  K  Q  P  M  F  T  F  S  L  S  K  H  *  N  S  T  K  T  K  N  K  S  *  *  E  S  F  L  S  F  F  V  C  V  C  V  *  L  G  F  A  F  L  S  Q  F  W  L  F  Q  *  E  R  K  E  D  L  R  V  S  Q  E  K  K  L  V  R  K  *  S  R  K  R  S  S  E  E  G  G  M  G  R  G  R  V  E  L  K  R  I  E  N  K  I  N  R  Q  V  T  F  A  K  R  R  N  G  L  L  K  K  A  Y  E  L  S  V  L  C  D  A  E  V  A  L  L  V  F  S  N  R  G  K  L  Y  E  F  C  S  T  N  N :   M  L  K  T  L  D  R  Y  Q  K  C  S  Y  G  T  L  E  V  N  R  S  I  K  D  N  E  :  Q  S  S  Y  R  E  Y  L  K  L  K  A  K  Y  E  S  L  Q  R  Y  Q  R :   H  L  L  G  D  E  L  G  P  L  T  I  D  D  L  E  H  L  E  V  Q  L  D  T  S  L  K  H  I  R  S  T  R  :  T  Q  M  M  L  D  Q  L  S  D  L  Q  T  K  :  E  K  L  W  N  E  A  N  K  V  L  E  R  K  :  M  E  E  I  Y  A  E  N  N  M  Q  Q  A  W  G  G  G  E  Q  S  L  N  Y  G  Q  Q  Q  H  P  Q  S  Q  G  F  F  Q  P  L  E  C  N  S  S  L  Q  I  G :   Y  D  P  I  T  T  S  S  Q  I  T  A  V  T  N  A  Q  N  V  N  G  M  I  P  G  W  M  L  *  M  K  K  S  F  I  F  S  F  A  *  K  H  M  K  Y  I  S  I  I  I  K  E  N  S  S  T  F  I  F  S  K  I  P  *  L  R  *  T  L  *  T  I  F  F  A  *  K  Q  T  C  L  L  G  N  V  L  F  Y  S  N  H  N  V  D  V  A  E  Y  D  D  Y  *  H  L  S  C  E  F  </second_frame>
            <third_frame>   P  K  A  L  R  Y  L  N  L  E  Y  L  S  K  S  *  S  *  N  N  E  S  L  K  K  I  G  R  N  A  I  D  K  N  N  P  C  S  L  F  L  S  L  N  I  E  I  Q  P  K  Q  K  T  K  V  D  K  N  P  F  F  L  S  L  C  V  C  V  S  S  *  G  L  H  F  F  H  N  F  G  C  F  S  R  R  E  K  R  I  *  E  L  A  K  R  R  N  *  *  E  N  K  V  E  K  D  H  Q  R  K  E  G  W  V  E  E  E  L  S  *  R  G  *  K  T  R  *  I  D  K  S  L  L  Q  R  G  E  M  D  C  S  K  K  L  M  N  Y  L  C  F  V  M  L  K  L  L  Y  S  F  S  L  I  V  E  N  S  M  N  S  A  A  Q  T   : I  C  S  K  H  L  I  G  T  K  S  A  A  M  E  H  W  K  S  I  D  Q  S  K  I  M  S :   K  A  A  I  G  N  T  *  N  S  K  P  N  M  S  R  C  S  D  I  K   : D  T  F  L  E  M  S  W  G  L  *  L  *  M  I  L  S  I  L  K  S  N  *  I  L  P  S  N  T  L  G  P  P  G :   H  K  *  C  L  I  S  F  L  I  F  K  L  R :   R  N  C  G  M  R  L  T  R  F  L  K  E  R :   W  K  K  Y  M  L  K  T  T  C  N  K  H  G  V  V  V  S  K  V  S  I  M  V  S  S  N  I  L  N  L  R  V  S  S  N  L  *  S  A  T  L  P  C  K  L   : G  T  I  Q  *  Q  L  Q  A  K  *  Q  Q  *  Q  M  P  K  T  *  M  V  *  Y  L  V  G  C  C  E  *  K  S  P  L  S  S  A  L  H  K  S  I  *  S  I  F  L  *  *  *  R  K  T  P  V  P  L  F  S  A  K  Y  P  N  *  G  E  R  C  E  P  F  S  L  H  K  N  K  L  V  C  L  E  M  F  Y  F  I  Q  I  I  M  W  M  L  L  N  M  M  I  I  S  I  F  H  V  N  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0092M23.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74310" stop="74096"/>
                    <exon start="72627" stop="72549"/>
                    <exon start="72310" stop="72246"/>
                    <exon start="71381" stop="71282"/>
                    <exon start="71203" stop="71162"/>
                    <exon start="71083" stop="71042"/>
                    <exon start="70741" stop="70602"/>
                    <exon start="70383" stop="70296"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>768</number_coding_nucleotides>
                  <number_encoded_amino_acids>256</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRKRSSEEGGMGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALLVFSNRGKLYEFCSTNNMLKTLDRYQKCSYGTLEVNRSIKDNEQSSYREYLKLKAKYESLQRYQRHLLGDELGPLTIDDLEHLEVQLDTSLKHIRSTRTQMMLDQLSDLQTKEKLWNEANKVLERKMEEIYAENNMQQAWGGGEQSLNYGQQQHPQSQGFFQPLECNSSLQIGYDPITTSSQITAVTNAQNVNGMIPGWML*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="74617" e_stop="74096"/>
            <exon e_start="72627" e_stop="72549"/>
            <exon e_start="72310" e_stop="72246"/>
            <exon e_start="71381" e_stop="71282"/>
            <exon e_start="71203" e_stop="71162"/>
            <exon e_start="71083" e_stop="71042"/>
            <exon e_start="70744" e_stop="70602"/>
            <exon e_start="70383" e_stop="70058"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.917" e_score="0.998"/>
          <exon-intron don_prob="0.840" acc_prob="0.890" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.604" e_score="1.000"/>
          <exon-intron don_prob="0.943" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.885" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="74617" e_stop="74096" e_length="522"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.917">
            <gDNA_intron_boundary i_start="74095" i_stop="72628" i_length="1468"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="72627" e_stop="72549" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="0.840" acc_prob="0.890">
            <gDNA_intron_boundary i_start="72548" i_stop="72311" i_length="238"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="72310" e_stop="72246" e_length="65"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.998">
            <gDNA_intron_boundary i_start="72245" i_stop="71382" i_length="864"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="71381" e_stop="71282" e_length="100"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.604">
            <gDNA_intron_boundary i_start="71281" i_stop="71204" i_length="78"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="71203" e_stop="71162" e_length="42"/>
          </exon>
          <intron i_serial="5" don_prob="0.943" acc_prob="0.983">
            <gDNA_intron_boundary i_start="71161" i_stop="71084" i_length="78"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="71083" e_stop="71042" e_length="42"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="0.885">
            <gDNA_intron_boundary i_start="71041" i_stop="70745" i_length="297"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="70744" e_stop="70602" e_length="143"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="70601" i_stop="70384" i_length="218"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="70383" e_stop="70058" e_length="326"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74617" stop="74296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321022" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74613" stop="74096"/>
              <exon start="72627" stop="72549"/>
              <exon start="72310" stop="72250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74609" stop="74157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74609" stop="74164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74609" stop="74323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74578" stop="74096"/>
              <exon start="72627" stop="72549"/>
              <exon start="72310" stop="72246"/>
              <exon start="71381" stop="71282"/>
              <exon start="71203" stop="71164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74578" stop="74096"/>
              <exon start="72627" stop="72610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319419" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74578" stop="74182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319557" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74577" stop="74096"/>
              <exon start="72627" stop="72591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319441" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74549" stop="74278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390523" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74548" stop="74130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326298" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74546" stop="74096"/>
              <exon start="72627" stop="72549"/>
              <exon start="72310" stop="72246"/>
              <exon start="71381" stop="71282"/>
              <exon start="71203" stop="71162"/>
              <exon start="71083" stop="71042"/>
              <exon start="70744" stop="70654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74546" stop="74096"/>
              <exon start="72627" stop="72549"/>
              <exon start="72310" stop="72251"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74539" stop="74096"/>
              <exon start="72627" stop="72608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74539" stop="74175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74537" stop="74096"/>
              <exon start="72627" stop="72549"/>
              <exon start="72310" stop="72246"/>
              <exon start="71381" stop="71335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248546" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74537" stop="74096"/>
              <exon start="72627" stop="72549"/>
              <exon start="72310" stop="72277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74519" stop="74096"/>
              <exon start="72627" stop="72549"/>
              <exon start="72310" stop="72246"/>
              <exon start="71381" stop="71282"/>
              <exon start="71203" stop="71162"/>
              <exon start="71083" stop="71052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74519" stop="74096"/>
              <exon start="72627" stop="72549"/>
              <exon start="72310" stop="72246"/>
              <exon start="71381" stop="71310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249855" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74517" stop="74096"/>
              <exon start="72627" stop="72549"/>
              <exon start="72310" stop="72246"/>
              <exon start="71381" stop="71282"/>
              <exon start="71203" stop="71162"/>
              <exon start="71083" stop="71062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578068" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74517" stop="74164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74516" stop="74288"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74510" stop="74267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238239" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74502" stop="74096"/>
              <exon start="72627" stop="72549"/>
              <exon start="72310" stop="72246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74469" stop="74096"/>
              <exon start="72627" stop="72549"/>
              <exon start="72310" stop="72246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74464" stop="74096"/>
              <exon start="72627" stop="72568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74464" stop="74096"/>
              <exon start="72627" stop="72601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231068" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74463" stop="74096"/>
              <exon start="72627" stop="72549"/>
              <exon start="72310" stop="72246"/>
              <exon start="71381" stop="71334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74462" stop="74096"/>
              <exon start="72627" stop="72549"/>
              <exon start="72310" stop="72250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272794" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74453" stop="74096"/>
              <exon start="72627" stop="72549"/>
              <exon start="72310" stop="72246"/>
              <exon start="71381" stop="71282"/>
              <exon start="71203" stop="71162"/>
              <exon start="71083" stop="71042"/>
              <exon start="70744" stop="70675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74453" stop="74096"/>
              <exon start="72627" stop="72549"/>
              <exon start="72310" stop="72246"/>
              <exon start="71381" stop="71282"/>
              <exon start="71203" stop="71162"/>
              <exon start="71083" stop="71042"/>
              <exon start="70744" stop="70687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706022" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74412" stop="74096"/>
              <exon start="72627" stop="72549"/>
              <exon start="72310" stop="72246"/>
              <exon start="71381" stop="71315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717846" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74406" stop="74096"/>
              <exon start="72627" stop="72549"/>
              <exon start="72310" stop="72246"/>
              <exon start="71381" stop="71282"/>
              <exon start="71203" stop="71162"/>
              <exon start="71083" stop="71042"/>
              <exon start="70744" stop="70602"/>
              <exon start="70383" stop="70312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74402" stop="74096"/>
              <exon start="72627" stop="72549"/>
              <exon start="72310" stop="72246"/>
              <exon start="71381" stop="71360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74394" stop="74096"/>
              <exon start="72627" stop="72549"/>
              <exon start="72310" stop="72246"/>
              <exon start="71381" stop="71282"/>
              <exon start="71203" stop="71173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74393" stop="74124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397746" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74392" stop="74096"/>
              <exon start="72627" stop="72549"/>
              <exon start="72310" stop="72246"/>
              <exon start="71381" stop="71282"/>
              <exon start="71203" stop="71173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255907" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74392" stop="74096"/>
              <exon start="72627" stop="72549"/>
              <exon start="72310" stop="72246"/>
              <exon start="71381" stop="71296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74392" stop="74096"/>
              <exon start="72627" stop="72549"/>
              <exon start="72310" stop="72246"/>
              <exon start="71381" stop="71329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74385" stop="74096"/>
              <exon start="72627" stop="72549"/>
              <exon start="72310" stop="72246"/>
              <exon start="71381" stop="71282"/>
              <exon start="71203" stop="71178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74380" stop="74096"/>
              <exon start="72627" stop="72549"/>
              <exon start="72310" stop="72246"/>
              <exon start="71381" stop="71337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259917" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74379" stop="74096"/>
              <exon start="72627" stop="72549"/>
              <exon start="72310" stop="72246"/>
              <exon start="71381" stop="71282"/>
              <exon start="71203" stop="71191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220117" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74379" stop="74096"/>
              <exon start="72627" stop="72594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220508" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74341" stop="74096"/>
              <exon start="72627" stop="72549"/>
              <exon start="72310" stop="72246"/>
              <exon start="71381" stop="71282"/>
              <exon start="71203" stop="71162"/>
              <exon start="71083" stop="71077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242467" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74341" stop="74185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238217" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74335" stop="74096"/>
              <exon start="72627" stop="72549"/>
              <exon start="72310" stop="72246"/>
              <exon start="71381" stop="71358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74309" stop="74150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378475" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74268" stop="74096"/>
              <exon start="72627" stop="72572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239952" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74266" stop="74096"/>
              <exon start="72627" stop="72549"/>
              <exon start="72310" stop="72246"/>
              <exon start="71381" stop="71282"/>
              <exon start="71203" stop="71162"/>
              <exon start="71083" stop="71068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72305" stop="72246"/>
              <exon start="71381" stop="71282"/>
              <exon start="71203" stop="71162"/>
              <exon start="71083" stop="71042"/>
              <exon start="70744" stop="70602"/>
              <exon start="70383" stop="70153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70632" stop="70602"/>
              <exon start="70383" stop="70063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70632" stop="70602"/>
              <exon start="70383" stop="70063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220025" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70332" stop="70058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252375" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCCTAAAGCTCTAAGGTATCTAAATTTGGAGTACCTAAGCAAATCCTAAAGTTAAAACAATGAATCCCTAAAGAAGATAGGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA : TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG : CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG : ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGG : ACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAG : GAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAG : CAGATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGG : GTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCCCAAAACGTGAATGGTATGATACCTGGTTGGATGCTGTGAATGAAAAAGTCCTTTATCTTCAGCTTTGCATAAAAGCATATGAAGTATATTTCTATAATAATAAAGGAAAACTCCAGTACCTTTATTTTCAGCAAAATACCCTAATTAAGGTGAACGTTGTGAACCATTTTCTTTGCATAAAAACAAACTTGTTTGCTTGGAAATGTTTTATTTTATTCAAATCATAATGTGGATGTTGCTGAATATGATGATTATTAGCATCTTTCATGTGAATTCA</gDNA_template>
            <first_frame> T  L  K  L  *  G  I  *  I  W  S  T  *  A  N  P  K  V  K  T  M  N  P  *  R  R  *  E  E  M  P  *  I  K  T  T  H  V  H  F  F  S  L  *  T  L  K  F  N  Q  N  K  K  Q  K  L  I  R  I  L  S  F  F  L  C  V  C  V  C  L  A  R  V  C  I  S  F  T  I  L  V  V  S  V  G  E  K  R  G  S  K  S  *  P  R  E  E  I  S  E  K  I  K  *  K  K  I  I  R  G  R  R  D  G  *  R  K  S  *  A  E  E  D  R  K  Q  D  K  *  T  S  H  F  C  K  E  E  K  W  I  A  Q  K  S  L  *  T  I  C  A  L  *  C  *  S  C  S  T  R  F  L  *  S  W  K  T  L  *  I  L  Q  H  K  Q  :  Y  A  Q  N  T  *  *  V  P  K  V  Q  L  W  N  I  G  S  Q  S  I  N  Q  R  *  *   : A  K  Q  L  *  G  I  L  E  T  Q  S  Q  I  *  V  A  A  A  I  S  K  :  T  P  S  W  R  *  V  G  A  S  D  Y  R  *  S  *  A  S  *  S  P  T  R  Y  F  P  Q  T  H  *  V  H  Q   : D  T  N  D  A  *  S  A  F  *  S  S  N  *   : G  E  I  V  E  *  G  *  Q  G  S  *  K  K   : A  D  G  R  N  I  C  *  K  Q  H  A  T  S  M  G  W  W  *  A  K  S  Q  L  W  S  A  A  T  S  S  I  S  G  F  L  P  T  S  R  V  Q  L  F  L  A  N  W  :  V  R  S  N  N  N  F  K  P  N  N  S  S  N  K  C  P  K  R  E  W  Y  D  T  W  L  D  A  V  N  E  K  V  L  Y  L  Q  L  C  I  K  A  Y  E  V  Y  F  Y  N  N  K  G  K  L  Q  Y  L  Y  F  Q  Q  N  T  L  I  K  V  N  V  V  N  H  F  L  C  I  K  T  N  L  F  A  W  K  C  F  I  L  F  K  S  *  C  G  C  C  *  I  *  *  L  L  A  S  F  M  *  I   </first_frame>
            <second_frame>  P  *  S  S  K  V  S  K  F  G  V  P  K  Q  I  L  K  L  K  Q  *  I  P  K  E  D  R  K  K  C  H  R  *  K  Q  P  M  F  T  F  S  L  S  K  H  *  N  S  T  K  T  K  N  K  S  *  *  E  S  F  L  S  F  F  V  C  V  C  V  *  L  G  F  A  F  L  S  Q  F  W  L  F  Q  *  E  R  K  E  D  L  R  V  S  Q  E  K  K  L  V  R  K  *  S  R  K  R  S  S  E  E  G  G  M  G  R  G  R  V  E  L  K  R  I  E  N  K  I  N  R  Q  V  T  F  A  K  R  R  N  G  L  L  K  K  A  Y  E  L  S  V  L  C  D  A  E  V  A  L  L  V  F  S  N  R  G  K  L  Y  E  F  C  S  T  N  N :   M  L  K  T  L  D  R  Y  Q  K  C  S  Y  G  T  L  E  V  N  R  S  I  K  D  N  E  :  Q  S  S  Y  R  E  Y  L  K  L  K  A  K  Y  E  S  L  Q  R  Y  Q  R :   H  L  L  G  D  E  L  G  P  L  T  I  D  D  L  E  H  L  E  V  Q  L  D  T  S  L  K  H  I  R  S  T  R  :  T  Q  M  M  L  D  Q  L  S  D  L  Q  T  K  :  E  K  L  W  N  E  A  N  K  V  L  E  R  K  :  Q  M  E  E  I  Y  A  E  N  N  M  Q  Q  A  W  G  G  G  E  Q  S  L  N  Y  G  Q  Q  Q  H  P  Q  S  Q  G  F  F  Q  P  L  E  C  N  S  S  L  Q  I  G :   Y  D  P  I  T  T  S  S  Q  I  T  A  V  T  N  A  Q  N  V  N  G  M  I  P  G  W  M  L  *  M  K  K  S  F  I  F  S  F  A  *  K  H  M  K  Y  I  S  I  I  I  K  E  N  S  S  T  F  I  F  S  K  I  P  *  L  R  *  T  L  *  T  I  F  F  A  *  K  Q  T  C  L  L  G  N  V  L  F  Y  S  N  H  N  V  D  V  A  E  Y  D  D  Y  *  H  L  S  C  E  F  </second_frame>
            <third_frame>   P  K  A  L  R  Y  L  N  L  E  Y  L  S  K  S  *  S  *  N  N  E  S  L  K  K  I  G  R  N  A  I  D  K  N  N  P  C  S  L  F  L  S  L  N  I  E  I  Q  P  K  Q  K  T  K  V  D  K  N  P  F  F  L  S  L  C  V  C  V  S  S  *  G  L  H  F  F  H  N  F  G  C  F  S  R  R  E  K  R  I  *  E  L  A  K  R  R  N  *  *  E  N  K  V  E  K  D  H  Q  R  K  E  G  W  V  E  E  E  L  S  *  R  G  *  K  T  R  *  I  D  K  S  L  L  Q  R  G  E  M  D  C  S  K  K  L  M  N  Y  L  C  F  V  M  L  K  L  L  Y  S  F  S  L  I  V  E  N  S  M  N  S  A  A  Q  T   : I  C  S  K  H  L  I  G  T  K  S  A  A  M  E  H  W  K  S  I  D  Q  S  K  I  M  S :   K  A  A  I  G  N  T  *  N  S  K  P  N  M  S  R  C  S  D  I  K   : D  T  F  L  E  M  S  W  G  L  *  L  *  M  I  L  S  I  L  K  S  N  *  I  L  P  S  N  T  L  G  P  P  G :   H  K  *  C  L  I  S  F  L  I  F  K  L  R :   R  N  C  G  M  R  L  T  R  F  L  K  E  S :   R  W  K  K  Y  M  L  K  T  T  C  N  K  H  G  V  V  V  S  K  V  S  I  M  V  S  S  N  I  L  N  L  R  V  S  S  N  L  *  S  A  T  L  P  C  K  L   : G  T  I  Q  *  Q  L  Q  A  K  *  Q  Q  *  Q  M  P  K  T  *  M  V  *  Y  L  V  G  C  C  E  *  K  S  P  L  S  S  A  L  H  K  S  I  *  S  I  F  L  *  *  *  R  K  T  P  V  P  L  F  S  A  K  Y  P  N  *  G  E  R  C  E  P  F  S  L  H  K  N  K  L  V  C  L  E  M  F  Y  F  I  Q  I  I  M  W  M  L  L  N  M  M  I  I  S  I  F  H  V  N  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0092M23.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74310" stop="74096"/>
                    <exon start="72627" stop="72549"/>
                    <exon start="72310" stop="72246"/>
                    <exon start="71381" stop="71282"/>
                    <exon start="71203" stop="71162"/>
                    <exon start="71083" stop="71042"/>
                    <exon start="70744" stop="70602"/>
                    <exon start="70383" stop="70296"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>771</number_coding_nucleotides>
                  <number_encoded_amino_acids>257</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRKRSSEEGGMGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALLVFSNRGKLYEFCSTNNMLKTLDRYQKCSYGTLEVNRSIKDNEQSSYREYLKLKAKYESLQRYQRHLLGDELGPLTIDDLEHLEVQLDTSLKHIRSTRTQMMLDQLSDLQTKEKLWNEANKVLERKQMEEIYAENNMQQAWGGGEQSLNYGQQQHPQSQGFFQPLECNSSLQIGYDPITTSSQITAVTNAQNVNGMIPGWML*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="74617" e_stop="74096"/>
            <exon e_start="72627" e_stop="72549"/>
            <exon e_start="72310" e_stop="72246"/>
            <exon e_start="71381" e_stop="71282"/>
            <exon e_start="71203" e_stop="71162"/>
            <exon e_start="71083" e_stop="71042"/>
            <exon e_start="70741" e_stop="70490"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.917" e_score="0.998"/>
          <exon-intron don_prob="0.840" acc_prob="0.890" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.604" e_score="1.000"/>
          <exon-intron don_prob="0.943" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="74617" e_stop="74096" e_length="522"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.917">
            <gDNA_intron_boundary i_start="74095" i_stop="72628" i_length="1468"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="72627" e_stop="72549" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="0.840" acc_prob="0.890">
            <gDNA_intron_boundary i_start="72548" i_stop="72311" i_length="238"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="72310" e_stop="72246" e_length="65"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.998">
            <gDNA_intron_boundary i_start="72245" i_stop="71382" i_length="864"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="71381" e_stop="71282" e_length="100"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.604">
            <gDNA_intron_boundary i_start="71281" i_stop="71204" i_length="78"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="71203" e_stop="71162" e_length="42"/>
          </exon>
          <intron i_serial="5" don_prob="0.943" acc_prob="0.983">
            <gDNA_intron_boundary i_start="71161" i_stop="71084" i_length="78"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="71083" e_stop="71042" e_length="42"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="0.994">
            <gDNA_intron_boundary i_start="71041" i_stop="70742" i_length="300"/>
          </intron>
          <exon e_serial="7" e_score="0.988">
            <gDNA_exon_boundary e_start="70741" e_stop="70490" e_length="252"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74617" stop="74296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321022" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74613" stop="74096"/>
              <exon start="72627" stop="72549"/>
              <exon start="72310" stop="72250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74609" stop="74157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74609" stop="74164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74609" stop="74323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74578" stop="74096"/>
              <exon start="72627" stop="72549"/>
              <exon start="72310" stop="72246"/>
              <exon start="71381" stop="71282"/>
              <exon start="71203" stop="71164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74578" stop="74096"/>
              <exon start="72627" stop="72610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319419" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74578" stop="74182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319557" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74577" stop="74096"/>
              <exon start="72627" stop="72591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319441" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74549" stop="74278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390523" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74548" stop="74130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326298" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74546" stop="74096"/>
              <exon start="72627" stop="72549"/>
              <exon start="72310" stop="72251"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74539" stop="74096"/>
              <exon start="72627" stop="72608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74539" stop="74175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74537" stop="74096"/>
              <exon start="72627" stop="72549"/>
              <exon start="72310" stop="72246"/>
              <exon start="71381" stop="71335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248546" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74537" stop="74096"/>
              <exon start="72627" stop="72549"/>
              <exon start="72310" stop="72277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74520" stop="74096"/>
              <exon start="72627" stop="72549"/>
              <exon start="72310" stop="72246"/>
              <exon start="71381" stop="71282"/>
              <exon start="71203" stop="71162"/>
              <exon start="71083" stop="71042"/>
              <exon start="70741" stop="70639"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74520" stop="74096"/>
              <exon start="72627" stop="72549"/>
              <exon start="72310" stop="72246"/>
              <exon start="71381" stop="71282"/>
              <exon start="71203" stop="71162"/>
              <exon start="71083" stop="71042"/>
              <exon start="70741" stop="70690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74519" stop="74096"/>
              <exon start="72627" stop="72549"/>
              <exon start="72310" stop="72246"/>
              <exon start="71381" stop="71282"/>
              <exon start="71203" stop="71162"/>
              <exon start="71083" stop="71052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74519" stop="74096"/>
              <exon start="72627" stop="72549"/>
              <exon start="72310" stop="72246"/>
              <exon start="71381" stop="71310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249855" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74517" stop="74096"/>
              <exon start="72627" stop="72549"/>
              <exon start="72310" stop="72246"/>
              <exon start="71381" stop="71282"/>
              <exon start="71203" stop="71162"/>
              <exon start="71083" stop="71062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578068" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74517" stop="74164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74516" stop="74288"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74511" stop="74096"/>
              <exon start="72627" stop="72549"/>
              <exon start="72310" stop="72246"/>
              <exon start="71381" stop="71282"/>
              <exon start="71203" stop="71162"/>
              <exon start="71083" stop="71042"/>
              <exon start="70741" stop="70606"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707966" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74510" stop="74267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238239" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74502" stop="74096"/>
              <exon start="72627" stop="72549"/>
              <exon start="72310" stop="72246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74469" stop="74096"/>
              <exon start="72627" stop="72549"/>
              <exon start="72310" stop="72246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74464" stop="74096"/>
              <exon start="72627" stop="72568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74464" stop="74096"/>
              <exon start="72627" stop="72601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231068" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74463" stop="74096"/>
              <exon start="72627" stop="72549"/>
              <exon start="72310" stop="72246"/>
              <exon start="71381" stop="71334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74462" stop="74096"/>
              <exon start="72627" stop="72549"/>
              <exon start="72310" stop="72250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272794" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74412" stop="74096"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717846" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74402" stop="74096"/>
              <exon start="72627" stop="72549"/>
              <exon start="72310" stop="72246"/>
              <exon start="71381" stop="71360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74394" stop="74096"/>
              <exon start="72627" stop="72549"/>
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              <exon start="71203" stop="71173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74393" stop="74124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397746" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74392" stop="74096"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255907" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74392" stop="74096"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74392" stop="74096"/>
              <exon start="72627" stop="72549"/>
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              <exon start="71381" stop="71329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74385" stop="74096"/>
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              <exon start="71381" stop="71282"/>
              <exon start="71203" stop="71178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74380" stop="74096"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259917" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74379" stop="74096"/>
              <exon start="72627" stop="72549"/>
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              <exon start="71381" stop="71282"/>
              <exon start="71203" stop="71191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220117" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74379" stop="74096"/>
              <exon start="72627" stop="72594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220508" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74341" stop="74096"/>
              <exon start="72627" stop="72549"/>
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              <exon start="71381" stop="71282"/>
              <exon start="71203" stop="71162"/>
              <exon start="71083" stop="71077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242467" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74341" stop="74185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238217" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74335" stop="74096"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74309" stop="74150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378475" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74268" stop="74096"/>
              <exon start="72627" stop="72572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239952" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74266" stop="74096"/>
              <exon start="72627" stop="72549"/>
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              <exon start="71083" stop="71042"/>
              <exon start="70741" stop="70676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74266" stop="74096"/>
              <exon start="72627" stop="72549"/>
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              <exon start="71203" stop="71162"/>
              <exon start="71083" stop="71068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72577" stop="72549"/>
              <exon start="72310" stop="72246"/>
              <exon start="71381" stop="71282"/>
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              <exon start="71083" stop="71042"/>
              <exon start="70741" stop="70648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240971" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72307" stop="72246"/>
              <exon start="71381" stop="71282"/>
              <exon start="71203" stop="71162"/>
              <exon start="71083" stop="71042"/>
              <exon start="70741" stop="70490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70686" stop="70490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220164" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCCTAAAGCTCTAAGGTATCTAAATTTGGAGTACCTAAGCAAATCCTAAAGTTAAAACAATGAATCCCTAAAGAAGATAGGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA : TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG : CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG : ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGG : ACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAG : GAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAG : ATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGGGTAAATTCTACCATATTCATTCTATATATATCTTAATTTTTAATTTATCCTATCTATTTTACATCTGCCCATTAGTTCACAAGTGAGATTTTTTGAAAAAAAAAAGGAAGAA</gDNA_template>
            <first_frame> T  L  K  L  *  G  I  *  I  W  S  T  *  A  N  P  K  V  K  T  M  N  P  *  R  R  *  E  E  M  P  *  I  K  T  T  H  V  H  F  F  S  L  *  T  L  K  F  N  Q  N  K  K  Q  K  L  I  R  I  L  S  F  F  L  C  V  C  V  C  L  A  R  V  C  I  S  F  T  I  L  V  V  S  V  G  E  K  R  G  S  K  S  *  P  R  E  E  I  S  E  K  I  K  *  K  K  I  I  R  G  R  R  D  G  *  R  K  S  *  A  E  E  D  R  K  Q  D  K  *  T  S  H  F  C  K  E  E  K  W  I  A  Q  K  S  L  *  T  I  C  A  L  *  C  *  S  C  S  T  R  F  L  *  S  W  K  T  L  *  I  L  Q  H  K  Q  :  Y  A  Q  N  T  *  *  V  P  K  V  Q  L  W  N  I  G  S  Q  S  I  N  Q  R  *  *   : A  K  Q  L  *  G  I  L  E  T  Q  S  Q  I  *  V  A  A  A  I  S  K  :  T  P  S  W  R  *  V  G  A  S  D  Y  R  *  S  *  A  S  *  S  P  T  R  Y  F  P  Q  T  H  *  V  H  Q   : D  T  N  D  A  *  S  A  F  *  S  S  N  *   : G  E  I  V  E  *  G  *  Q  G  S  *  K  K   : D  G  R  N  I  C  *  K  Q  H  A  T  S  M  G  W  W  *  A  K  S  Q  L  W  S  A  A  T  S  S  I  S  G  F  L  P  T  S  R  V  Q  L  F  L  A  N  W  V  N  S  T  I  F  I  L  Y  I  S  *  F  L  I  Y  P  I  Y  F  T  S  A  H  *  F  T  S  E  I  F  *  K  K  K  G  R  </first_frame>
            <second_frame>  P  *  S  S  K  V  S  K  F  G  V  P  K  Q  I  L  K  L  K  Q  *  I  P  K  E  D  R  K  K  C  H  R  *  K  Q  P  M  F  T  F  S  L  S  K  H  *  N  S  T  K  T  K  N  K  S  *  *  E  S  F  L  S  F  F  V  C  V  C  V  *  L  G  F  A  F  L  S  Q  F  W  L  F  Q  *  E  R  K  E  D  L  R  V  S  Q  E  K  K  L  V  R  K  *  S  R  K  R  S  S  E  E  G  G  M  G  R  G  R  V  E  L  K  R  I  E  N  K  I  N  R  Q  V  T  F  A  K  R  R  N  G  L  L  K  K  A  Y  E  L  S  V  L  C  D  A  E  V  A  L  L  V  F  S  N  R  G  K  L  Y  E  F  C  S  T  N  N :   M  L  K  T  L  D  R  Y  Q  K  C  S  Y  G  T  L  E  V  N  R  S  I  K  D  N  E  :  Q  S  S  Y  R  E  Y  L  K  L  K  A  K  Y  E  S  L  Q  R  Y  Q  R :   H  L  L  G  D  E  L  G  P  L  T  I  D  D  L  E  H  L  E  V  Q  L  D  T  S  L  K  H  I  R  S  T  R  :  T  Q  M  M  L  D  Q  L  S  D  L  Q  T  K  :  E  K  L  W  N  E  A  N  K  V  L  E  R  K  :  M  E  E  I  Y  A  E  N  N  M  Q  Q  A  W  G  G  G  E  Q  S  L  N  Y  G  Q  Q  Q  H  P  Q  S  Q  G  F  F  Q  P  L  E  C  N  S  S  L  Q  I  G  *  I  L  P  Y  S  F  Y  I  Y  L  N  F  *  F  I  L  S  I  L  H  L  P  I  S  S  Q  V  R  F  F  E  K  K  K  E  E </second_frame>
            <third_frame>   P  K  A  L  R  Y  L  N  L  E  Y  L  S  K  S  *  S  *  N  N  E  S  L  K  K  I  G  R  N  A  I  D  K  N  N  P  C  S  L  F  L  S  L  N  I  E  I  Q  P  K  Q  K  T  K  V  D  K  N  P  F  F  L  S  L  C  V  C  V  S  S  *  G  L  H  F  F  H  N  F  G  C  F  S  R  R  E  K  R  I  *  E  L  A  K  R  R  N  *  *  E  N  K  V  E  K  D  H  Q  R  K  E  G  W  V  E  E  E  L  S  *  R  G  *  K  T  R  *  I  D  K  S  L  L  Q  R  G  E  M  D  C  S  K  K  L  M  N  Y  L  C  F  V  M  L  K  L  L  Y  S  F  S  L  I  V  E  N  S  M  N  S  A  A  Q  T   : I  C  S  K  H  L  I  G  T  K  S  A  A  M  E  H  W  K  S  I  D  Q  S  K  I  M  S :   K  A  A  I  G  N  T  *  N  S  K  P  N  M  S  R  C  S  D  I  K   : D  T  F  L  E  M  S  W  G  L  *  L  *  M  I  L  S  I  L  K  S  N  *  I  L  P  S  N  T  L  G  P  P  G :   H  K  *  C  L  I  S  F  L  I  F  K  L  R :   R  N  C  G  M  R  L  T  R  F  L  K  E  R :   W  K  K  Y  M  L  K  T  T  C  N  K  H  G  V  V  V  S  K  V  S  I  M  V  S  S  N  I  L  N  L  R  V  S  S  N  L  *  S  A  T  L  P  C  K  L  G  K  F  Y  H  I  H  S  I  Y  I  L  I  F  N  L  S  Y  L  F  Y  I  C  P  L  V  H  K  *  D  F  L  K  K  K  R  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0092M23.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74310" stop="74096"/>
                    <exon start="72627" stop="72549"/>
                    <exon start="72310" stop="72246"/>
                    <exon start="71381" stop="71282"/>
                    <exon start="71203" stop="71162"/>
                    <exon start="71083" stop="71042"/>
                    <exon start="70741" stop="70598"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>684</number_coding_nucleotides>
                  <number_encoded_amino_acids>228</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRKRSSEEGGMGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALLVFSNRGKLYEFCSTNNMLKTLDRYQKCSYGTLEVNRSIKDNEQSSYREYLKLKAKYESLQRYQRHLLGDELGPLTIDDLEHLEVQLDTSLKHIRSTRTQMMLDQLSDLQTKEKLWNEANKVLERKMEEIYAENNMQQAWGGGEQSLNYGQQQHPQSQGFFQPLECNSSLQIG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="88450" PGL_stop="97591"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88450" e_stop="88719"/>
            <exon e_start="90694" e_stop="90978"/>
            <exon e_start="91075" e_stop="91162"/>
            <exon e_start="91596" e_stop="91717"/>
            <exon e_start="91935" e_stop="92074"/>
            <exon e_start="92159" e_stop="92231"/>
            <exon e_start="92542" e_stop="92630"/>
            <exon e_start="92723" e_stop="92828"/>
            <exon e_start="93559" e_stop="93771"/>
            <exon e_start="94591" e_stop="94696"/>
            <exon e_start="96035" e_stop="96123"/>
            <exon e_start="96262" e_stop="96339"/>
            <exon e_start="96818" e_stop="97481"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.081" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.888" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.948" acc_prob="0.111" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.623" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="88450" e_stop="88719" e_length="270"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.081">
            <gDNA_intron_boundary i_start="88720" i_stop="90693" i_length="1974"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="90694" e_stop="90978" e_length="285"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.982">
            <gDNA_intron_boundary i_start="90979" i_stop="91074" i_length="96"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="91075" e_stop="91162" e_length="88"/>
          </exon>
          <intron i_serial="3" don_prob="0.888" acc_prob="0.952">
            <gDNA_intron_boundary i_start="91163" i_stop="91595" i_length="433"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="91596" e_stop="91717" e_length="122"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.995">
            <gDNA_intron_boundary i_start="91718" i_stop="91934" i_length="217"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="91935" e_stop="92074" e_length="140"/>
          </exon>
          <intron i_serial="5" don_prob="0.948" acc_prob="0.111">
            <gDNA_intron_boundary i_start="92075" i_stop="92158" i_length="84"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="92159" e_stop="92231" e_length="73"/>
          </exon>
          <intron i_serial="6" don_prob="0.981" acc_prob="0.959">
            <gDNA_intron_boundary i_start="92232" i_stop="92541" i_length="310"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="92542" e_stop="92630" e_length="89"/>
          </exon>
          <intron i_serial="7" don_prob="0.988" acc_prob="0.623">
            <gDNA_intron_boundary i_start="92631" i_stop="92722" i_length="92"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="92723" e_stop="92828" e_length="106"/>
          </exon>
          <intron i_serial="8" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="92829" i_stop="93558" i_length="730"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="93559" e_stop="93771" e_length="213"/>
          </exon>
          <intron i_serial="9" don_prob="0.976" acc_prob="0.966">
            <gDNA_intron_boundary i_start="93772" i_stop="94590" i_length="819"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="94591" e_stop="94696" e_length="106"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="94697" i_stop="96034" i_length="1338"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="96035" e_stop="96123" e_length="89"/>
          </exon>
          <intron i_serial="11" don_prob="0.994" acc_prob="0.994">
            <gDNA_intron_boundary i_start="96124" i_stop="96261" i_length="138"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="96262" e_stop="96339" e_length="78"/>
          </exon>
          <intron i_serial="12" don_prob="0.989" acc_prob="0.999">
            <gDNA_intron_boundary i_start="96340" i_stop="96817" i_length="478"/>
          </intron>
          <exon e_serial="13" e_score="0.917">
            <gDNA_exon_boundary e_start="96818" e_stop="97481" e_length="664"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88450" stop="88719"/>
              <exon start="90694" stop="90978"/>
              <exon start="91075" stop="91121"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88471" stop="88719"/>
              <exon start="90694" stop="90978"/>
              <exon start="91075" stop="91162"/>
              <exon start="91596" stop="91696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88534" stop="88719"/>
              <exon start="90694" stop="90975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88534" stop="88719"/>
              <exon start="90694" stop="90941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418637" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88549" stop="88719"/>
              <exon start="90694" stop="90978"/>
              <exon start="91075" stop="91162"/>
              <exon start="91596" stop="91706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88550" stop="88719"/>
              <exon start="90694" stop="90974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247561" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88560" stop="88719"/>
              <exon start="90694" stop="90978"/>
              <exon start="91075" stop="91162"/>
              <exon start="91596" stop="91694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88560" stop="88719"/>
              <exon start="90694" stop="90978"/>
              <exon start="91075" stop="91100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90784" stop="90978"/>
              <exon start="91075" stop="91162"/>
              <exon start="91596" stop="91717"/>
              <exon start="91935" stop="92046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207615" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91108" stop="91162"/>
              <exon start="91596" stop="91717"/>
              <exon start="91935" stop="92074"/>
              <exon start="92159" stop="92231"/>
              <exon start="92542" stop="92630"/>
              <exon start="92723" stop="92828"/>
              <exon start="93559" stop="93771"/>
              <exon start="94591" stop="94649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91998" stop="92074"/>
              <exon start="92159" stop="92231"/>
              <exon start="92542" stop="92630"/>
              <exon start="92723" stop="92802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438816" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92008" stop="92074"/>
              <exon start="92159" stop="92231"/>
              <exon start="92542" stop="92630"/>
              <exon start="92723" stop="92828"/>
              <exon start="93559" stop="93771"/>
              <exon start="94591" stop="94653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92182" stop="92231"/>
              <exon start="92542" stop="92630"/>
              <exon start="92723" stop="92828"/>
              <exon start="93559" stop="93771"/>
              <exon start="94591" stop="94696"/>
              <exon start="96035" stop="96123"/>
              <exon start="96262" stop="96321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92542" stop="92630"/>
              <exon start="92723" stop="92828"/>
              <exon start="93559" stop="93771"/>
              <exon start="94591" stop="94696"/>
              <exon start="96035" stop="96123"/>
              <exon start="96262" stop="96339"/>
              <exon start="96818" stop="96834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92549" stop="92630"/>
              <exon start="92723" stop="92828"/>
              <exon start="93559" stop="93771"/>
              <exon start="94591" stop="94696"/>
              <exon start="96035" stop="96060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93690" stop="93771"/>
              <exon start="94591" stop="94696"/>
              <exon start="96035" stop="96123"/>
              <exon start="96262" stop="96339"/>
              <exon start="96818" stop="97002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208902" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93719" stop="93771"/>
              <exon start="94591" stop="94696"/>
              <exon start="96035" stop="96123"/>
              <exon start="96262" stop="96339"/>
              <exon start="96818" stop="97148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370340" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93719" stop="93771"/>
              <exon start="94591" stop="94696"/>
              <exon start="96035" stop="96123"/>
              <exon start="96262" stop="96339"/>
              <exon start="96818" stop="96835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96035" stop="96123"/>
              <exon start="96262" stop="96339"/>
              <exon start="96818" stop="97437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589691" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96105" stop="96123"/>
              <exon start="96262" stop="96339"/>
              <exon start="96818" stop="97432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418638" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96913" stop="97481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96926" stop="97284"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96999" stop="97437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97115" stop="97437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E614744" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCGAAGAGCAAGCACTAGGGTTTTTTGTGGTGCATTCCTATATTTATTGTCTCCACTTTCATTCCCCAAAATTTCTTTTTATTTGAGCTTCATAATTGCCGCAATTAGGCGTTAGTTTCTCCATTATCACACAAACCGTCAATGGCGGGTGACAACGGAAACAAGCAGAATGGAACTTCTTTTGATCTCAATGACTTCACCATCATCAAAGAAGGAGATGCTGAGATTCTTATGCATGCCAAAAATGAAGTTTTCTACAACAATTCCCAG : GTGAATAATAGAGACATGTCTATAGCTGTTTTGAGGACATTTATATCACAACGAAAGCTAGAACATGACGCAATGTTAGCTAGACGAACCAAGGCTGGAAATAAGGCACCTAATGCTAAAGTGGAAAACCCAGGTGATTCAGTGCAGCATAATGGTGAATCCACTGATGGATCGGAAGTCTTGAAAGACGCATCCCATGGTGAATCATCTAGCATTCCAGTGGAACAGAATAAAAATCTGCGGGGAAAAGGCCGAGAAGAACTAAAGCCTCCACGAGTTCTCGAG : GCTCTCTCAGCTTCTGGATTGAGGGCTTTAAGGTATGCTCGTGAAGTAGAAGGAATTAGCCAGGTCGTGGCCCTTGACAATGACAAAG : CCTCTGTGGAAGCTTGCAGGAGAAACATTAAGTTTAATGGTTCAGTGGCATGCTCTAAGGTGGAATCTCACCTTGCTGATGCAAGGGTTTATATGCTTACCCACCCAAACGAATTTGATGTG : GTTGATCTCGATCCTTATGGAGCACCTTCTGTGTTCTTAGACTCAGCAGTCCAATCTGTTGCTGATGGAGGAATGTTGATGTGTACTGCAACTGATATGGCAGTCTTATGTGCAGCAAATGGAGAAGTTTGCTATTCCAA : ATATGGCTCCTATCCTTTGAGAGGAAAATATTGTCATGAAATGGCTTTGCGGATCCTTCTTGCATCTATTGAG : AGCCATGCAAATCGATATAAGAGATATATAGTTCCAGTATTATCTGTTCAGATGGATTTCTATGTTCGCGTTTTTGTTCGTATATACAC : TTCTGCAAGTGATGTGAAAAATACTCCTTTGAAGCTCTCATATGTCTATCAATGCATTGGCTGCGACTCATTTCATCTTCAGACAGTTGGGAGGACAGTCTCAAAG : GATAAGAGTGTCCGATGCCTCCCTGGATTTGGCCCTGCAGTTCCTCAAGAGTGTAGTGATTGTGGTAAGAAATTCAACATGGGTGGACCCATATGGTCTGCCCCCATTCATGATCAAGAATGGGTAGCTGCCATGCTTGCAAATGTGAAATCAATGAAGGAACGCTATCCTGCTTATGAGCGGATCTCTGCTGTATTGACAACTATATCAGAG : GAACTACCTGATATTCCTCTGTTTCTGAGTTTGCACAATCTCTGTGCAACACTAAAATGCACTTCTCCCTCGGCAGTAATATTTCGCTCTGCTGTGATCAACGCAG : GATATCGCATATCAGGGACTCATGTGAATCCTTTGGGGTTGAAAACAGATGCTCCTATGAATGTCATTTGGGATATCATGCGTTGCTGG : GTCAGAAATCATCCTGTGAAAGCACAACCATCTGACCAGTCTGGAAGTGTGATTCTTGCTAAGGAGCCTGTTCTGCAG : GCTAATTTTGCTCGGGCTGTTGCATCCCTTAGCCAGGCACAAGCCAAGAAGGTTGCGCGTTTCCTCCCTAATCCTGAGAGGAATTGGGGTCCAAAACTAAGGGCAGGCCGGCAGATCACCAGTAAGCATGTGTCTCTTTTGGGTCCTAAAGCATTGAATGCAATTAGCAACCATGGGGATGGCGAGGGTAGCAACAATGAGAACGGCGATGTCAGCAACCATGAGAATGGCGATGGTAGCAACCATGAGAATGGTAATGGTAGCAACCATGAGGATGTCGAGGAGCCTGCAGCCAAGCGTAAGAAGACCGAAGAATCTGATTCATAACTTATATATCTTGGCCAAGTGTCTGCAGTTTTTATCCCATCATAATCCATCTCTTCTGCTGCATTTTCTTGCAGAGTGAGATCCATCTTCTTTCTGATAACTGTGAAAACGTCTATCGATAATGGGGAGGATTTCATCTTGTTTATCTCAAGTATACTTTTTAATTTTTAAAGGTATTTTAGGCTATTTATATTTATTTTGTTTGTCCCTTTTTTCCTTCATTTCAATCTTAATTCCAGTGCTGTATTAAATTTTGTTTTTCATTTTCATTTATCAGAAAACTACTCTGTAACATGGCTTGCGTTGTCTATTTGATCTTTTATGTCGACGAACATTA</gDNA_template>
            <first_frame> P  K  S  K  H  *  G  F  L  W  C  I  P  I  F  I  V  S  T  F  I  P  Q  N  F  F  L  F  E  L  H  N  C  R  N  *  A  L  V  S  P  L  S  H  K  P  S  M  A  G  D  N  G  N  K  Q  N  G  T  S  F  D  L  N  D  F  T  I  I  K  E  G  D  A  E  I  L  M  H  A  K  N  E  V  F  Y  N  N  S  Q  :  V  N  N  R  D  M  S  I  A  V  L  R  T  F  I  S  Q  R  K  L  E  H  D  A  M  L  A  R  R  T  K  A  G  N  K  A  P  N  A  K  V  E  N  P  G  D  S  V  Q  H  N  G  E  S  T  D  G  S  E  V  L  K  D  A  S  H  G  E  S  S  S  I  P  V  E  Q  N  K  N  L  R  G  K  G  R  E  E  L  K  P  P  R  V  L  E  :  A  L  S  A  S  G  L  R  A  L  R  Y  A  R  E  V  E  G  I  S  Q  V  V  A  L  D  N  D  K   : A  S  V  E  A  C  R  R  N  I  K  F  N  G  S  V  A  C  S  K  V  E  S  H  L  A  D  A  R  V  Y  M  L  T  H  P  N  E  F  D  V  :  V  D  L  D  P  Y  G  A  P  S  V  F  L  D  S  A  V  Q  S  V  A  D  G  G  M  L  M  C  T  A  T  D  M  A  V  L  C  A  A  N  G  E  V  C  Y  S  K :   Y  G  S  Y  P  L  R  G  K  Y  C  H  E  M  A  L  R  I  L  L  A  S  I  E  :  S  H  A  N  R  Y  K  R  Y  I  V  P  V  L  S  V  Q  M  D  F  Y  V  R  V  F  V  R  I  Y  T :   S  A  S  D  V  K  N  T  P  L  K  L  S  Y  V  Y  Q  C  I  G  C  D  S  F  H  L  Q  T  V  G  R  T  V  S  K  :  D  K  S  V  R  C  L  P  G  F  G  P  A  V  P  Q  E  C  S  D  C  G  K  K  F  N  M  G  G  P  I  W  S  A  P  I  H  D  Q  E  W  V  A  A  M  L  A  N  V  K  S  M  K  E  R  Y  P  A  Y  E  R  I  S  A  V  L  T  T  I  S  E  :  E  L  P  D  I  P  L  F  L  S  L  H  N  L  C  A  T  L  K  C  T  S  P  S  A  V  I  F  R  S  A  V  I  N  A   : G  Y  R  I  S  G  T  H  V  N  P  L  G  L  K  T  D  A  P  M  N  V  I  W  D  I  M  R  C  W  :  V  R  N  H  P  V  K  A  Q  P  S  D  Q  S  G  S  V  I  L  A  K  E  P  V  L  Q  :  A  N  F  A  R  A  V  A  S  L  S  Q  A  Q  A  K  K  V  A  R  F  L  P  N  P  E  R  N  W  G  P  K  L  R  A  G  R  Q  I  T  S  K  H  V  S  L  L  G  P  K  A  L  N  A  I  S  N  H  G  D  G  E  G  S  N  N  E  N  G  D  V  S  N  H  E  N  G  D  G  S  N  H  E  N  G  N  G  S  N  H  E  D  V  E  E  P  A  A  K  R  K  K  T  E  E  S  D  S  *  L  I  Y  L  G  Q  V  S  A  V  F  I  P  S  *  S  I  S  S  A  A  F  S  C  R  V  R  S  I  F  F  L  I  T  V  K  T  S  I  D  N  G  E  D  F  I  L  F  I  S  S  I  L  F  N  F  *  R  Y  F  R  L  F  I  F  I  L  F  V  P  F  F  L  H  F  N  L  N  S  S  A  V  L  N  F  V  F  H  F  H  L  S  E  N  Y  S  V  T  W  L  A  L  S  I  *  S  F  M  S  T  N  I  </first_frame>
            <second_frame>  R  R  A  S  T  R  V  F  C  G  A  F  L  Y  L  L  S  P  L  S  F  P  K  I  S  F  Y  L  S  F  I  I  A  A  I  R  R  *  F  L  H  Y  H  T  N  R  Q  W  R  V  T  T  E  T  S  R  M  E  L  L  L  I  S  M  T  S  P  S  S  K  K  E  M  L  R  F  L  C  M  P  K  M  K  F  S  T  T  I  P  R :   *  I  I  E  T  C  L  *  L  F  *  G  H  L  Y  H  N  E  S  *  N  M  T  Q  C  *  L  D  E  P  R  L  E  I  R  H  L  M  L  K  W  K  T  Q  V  I  Q  C  S  I  M  V  N  P  L  M  D  R  K  S  *  K  T  H  P  M  V  N  H  L  A  F  Q  W  N  R  I  K  I  C  G  E  K  A  E  K  N  *  S  L  H  E  F  S  R :   L  S  Q  L  L  D  *  G  L  *  G  M  L  V  K  *  K  E  L  A  R  S  W  P  L  T  M  T  K  :  P  L  W  K  L  A  G  E  T  L  S  L  M  V  Q  W  H  A  L  R  W  N  L  T  L  L  M  Q  G  F  I  C  L  P  T  Q  T  N  L  M  W :   L  I  S  I  L  M  E  H  L  L  C  S  *  T  Q  Q  S  N  L  L  L  M  E  E  C  *  C  V  L  Q  L  I  W  Q  S  Y  V  Q  Q  M  E  K  F  A  I  P   : N  M  A  P  I  L  *  E  E  N  I  V  M  K  W  L  C  G  S  F  L  H  L  L  R :   A  M  Q  I  D  I  R  D  I  *  F  Q  Y  Y  L  F  R  W  I  S  M  F  A  F  L  F  V  Y  T   : L  L  Q  V  M  *  K  I  L  L  *  S  S  H  M  S  I  N  A  L  A  A  T  H  F  I  F  R  Q  L  G  G  Q  S  Q  R :   I  R  V  S  D  A  S  L  D  L  A  L  Q  F  L  K  S  V  V  I  V  V  R  N  S  T  W  V  D  P  Y  G  L  P  P  F  M  I  K  N  G  *  L  P  C  L  Q  M  *  N  Q  *  R  N  A  I  L  L  M  S  G  S  L  L  Y  *  Q  L  Y  Q  R :   N  Y  L  I  F  L  C  F  *  V  C  T  I  S  V  Q  H  *  N  A  L  L  P  R  Q  *  Y  F  A  L  L  *  S  T  Q  :  D  I  A  Y  Q  G  L  M  *  I  L  W  G  *  K  Q  M  L  L  *  M  S  F  G  I  S  C  V  A  G :   S  E  I  I  L  *  K  H  N  H  L  T  S  L  E  V  *  F  L  L  R  S  L  F  C  R :   L  I  L  L  G  L  L  H  P  L  A  R  H  K  P  R  R  L  R  V  S  S  L  I  L  R  G  I  G  V  Q  N  *  G  Q  A  G  R  S  P  V  S  M  C  L  F  W  V  L  K  H  *  M  Q  L  A  T  M  G  M  A  R  V  A  T  M  R  T  A  M  S  A  T  M  R  M  A  M  V  A  T  M  R  M  V  M  V  A  T  M  R  M  S  R  S  L  Q  P  S  V  R  R  P  K  N  L  I  H  N  L  Y  I  L  A  K  C  L  Q  F  L  S  H  H  N  P  S  L  L  L  H  F  L  A  E  *  D  P  S  S  F  *  *  L  *  K  R  L  S  I  M  G  R  I  S  S  C  L  S  Q  V  Y  F  L  I  F  K  G  I  L  G  Y  L  Y  L  F  C  L  S  L  F  S  F  I  S  I  L  I  P  V  L  Y  *  I  L  F  F  I  F  I  Y  Q  K  T  T  L  *  H  G  L  R  C  L  F  D  L  L  C  R  R  T  L </second_frame>
            <third_frame>   E  E  Q  A  L  G  F  F  V  V  H  S  Y  I  Y  C  L  H  F  H  S  P  K  F  L  F  I  *  A  S  *  L  P  Q  L  G  V  S  F  S  I  I  T  Q  T  V  N  G  G  *  Q  R  K  Q  A  E  W  N  F  F  *  S  Q  *  L  H  H  H  Q  R  R  R  C  *  D  S  Y  A  C  Q  K  *  S  F  L  Q  Q  F  P   : G  E  *  *  R  H  V  Y  S  C  F  E  D  I  Y  I  T  T  K  A  R  T  *  R  N  V  S  *  T  N  Q  G  W  K  *  G  T  *  C  *  S  G  K  P  R  *  F  S  A  A  *  W  *  I  H  *  W  I  G  S  L  E  R  R  I  P  W  *  I  I  *  H  S  S  G  T  E  *  K  S  A  G  K  R  P  R  R  T  K  A  S  T  S  S  R   : G  S  L  S  F  W  I  E  G  F  K  V  C  S  *  S  R  R  N  *  P  G  R  G  P  *  Q  *  Q  S :   L  C  G  S  L  Q  E  K  H  *  V  *  W  F  S  G  M  L  *  G  G  I  S  P  C  *  C  K  G  L  Y  A  Y  P  P  K  R  I  *  C   : G  *  S  R  S  L  W  S  T  F  C  V  L  R  L  S  S  P  I  C  C  *  W  R  N  V  D  V  Y  C  N  *  Y  G  S  L  M  C  S  K  W  R  S  L  L  F  Q  :  I  W  L  L  S  F  E  R  K  I  L  S  *  N  G  F  A  D  P  S  C  I  Y  *   : E  P  C  K  S  I  *  E  I  Y  S  S  S  I  I  C  S  D  G  F  L  C  S  R  F  C  S  Y  I  H  :  F  C  K  *  C  E  K  Y  S  F  E  A  L  I  C  L  S  M  H  W  L  R  L  I  S  S  S  D  S  W  E  D  S  L  K   : G  *  E  C  P  M  P  P  W  I  W  P  C  S  S  S  R  V  *  *  L  W  *  E  I  Q  H  G  W  T  H  M  V  C  P  H  S  *  S  R  M  G  S  C  H  A  C  K  C  E  I  N  E  G  T  L  S  C  L  *  A  D  L  C  C  I  D  N  Y  I  R   : G  T  T  *  Y  S  S  V  S  E  F  A  Q  S  L  C  N  T  K  M  H  F  S  L  G  S  N  I  S  L  C  C  D  Q  R  R :   I  S  H  I  R  D  S  C  E  S  F  G  V  E  N  R  C  S  Y  E  C  H  L  G  Y  H  A  L  L   : G  Q  K  S  S  C  E  S  T  T  I  *  P  V  W  K  C  D  S  C  *  G  A  C  S  A   : G  *  F  C  S  G  C  C  I  P  *  P  G  T  S  Q  E  G  C  A  F  P  P  *  S  *  E  E  L  G  S  K  T  K  G  R  P  A  D  H  Q  *  A  C  V  S  F  G  S  *  S  I  E  C  N  *  Q  P  W  G  W  R  G  *  Q  Q  *  E  R  R  C  Q  Q  P  *  E  W  R  W  *  Q  P  *  E  W  *  W  *  Q  P  *  G  C  R  G  A  C  S  Q  A  *  E  D  R  R  I  *  F  I  T  Y  I  S  W  P  S  V  C  S  F  Y  P  I  I  I  H  L  F  C  C  I  F  L  Q  S  E  I  H  L  L  S  D  N  C  E  N  V  Y  R  *  W  G  G  F  H  L  V  Y  L  K  Y  T  F  *  F  L  K  V  F  *  A  I  Y  I  Y  F  V  C  P  F  F  P  S  F  Q  S  *  F  Q  C  C  I  K  F  C  F  S  F  S  F  I  R  K  L  L  C  N  M  A  C  V  V  Y  L  I  F  Y  V  D  E  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0092M23.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88558" stop="88719"/>
                    <exon start="90694" stop="90978"/>
                    <exon start="91075" stop="91162"/>
                    <exon start="91596" stop="91717"/>
                    <exon start="91935" stop="92074"/>
                    <exon start="92159" stop="92231"/>
                    <exon start="92542" stop="92630"/>
                    <exon start="92723" stop="92828"/>
                    <exon start="93559" stop="93771"/>
                    <exon start="94591" stop="94696"/>
                    <exon start="96035" stop="96123"/>
                    <exon start="96262" stop="96339"/>
                    <exon start="96818" stop="97144"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1875</number_coding_nucleotides>
                  <number_encoded_amino_acids>625</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALVSPLSHKPSMAGDNGNKQNGTSFDLNDFTIIKEGDAEILMHAKNEVFYNNSQVNNRDMSIAVLRTFISQRKLEHDAMLARRTKAGNKAPNAKVENPGDSVQHNGESTDGSEVLKDASHGESSSIPVEQNKNLRGKGREELKPPRVLEALSASGLRALRYAREVEGISQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPNEFDVVDLDPYGAPSVFLDSAVQSVADGGMLMCTATDMAVLCAANGEVCYSKYGSYPLRGKYCHEMALRILLASIESHANRYKRYIVPVLSVQMDFYVRVFVRIYTSASDVKNTPLKLSYVYQCIGCDSFHLQTVGRTVSKDKSVRCLPGFGPAVPQECSDCGKKFNMGGPIWSAPIHDQEWVAAMLANVKSMKERYPAYERISAVLTTISEELPDIPLFLSLHNLCATLKCTSPSAVIFRSAVINAGYRISGTHVNPLGLKTDAPMNVIWDIMRCWVRNHPVKAQPSDQSGSVILAKEPVLQANFARAVASLSQAQAKKVARFLPNPERNWGPKLRAGRQITSKHVSLLGPKALNAISNHGDGEGSNNENGDVSNHENGDGSNHENGNGSNHEDVEEPAAKRKKTEESDS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="88450" e_stop="88719"/>
            <exon e_start="90694" e_stop="90978"/>
            <exon e_start="91075" e_stop="91162"/>
            <exon e_start="91596" e_stop="91717"/>
            <exon e_start="91935" e_stop="92074"/>
            <exon e_start="92159" e_stop="92231"/>
            <exon e_start="92542" e_stop="92630"/>
            <exon e_start="92723" e_stop="92828"/>
            <exon e_start="93559" e_stop="93771"/>
            <exon e_start="94591" e_stop="94696"/>
            <exon e_start="96035" e_stop="96123"/>
            <exon e_start="96262" e_stop="96339"/>
            <exon e_start="96818" e_stop="97086"/>
            <exon e_start="97158" e_stop="97164"/>
            <exon e_start="97219" e_stop="97591"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.081" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.888" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.948" acc_prob="0.111" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.623" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.918"/>
          <exon-intron don_prob="0.281" acc_prob="0.724" e_score="0.857"/>
          <exon-only e_score="0.901"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="88450" e_stop="88719" e_length="270"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.081">
            <gDNA_intron_boundary i_start="88720" i_stop="90693" i_length="1974"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="90694" e_stop="90978" e_length="285"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.982">
            <gDNA_intron_boundary i_start="90979" i_stop="91074" i_length="96"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="91075" e_stop="91162" e_length="88"/>
          </exon>
          <intron i_serial="3" don_prob="0.888" acc_prob="0.952">
            <gDNA_intron_boundary i_start="91163" i_stop="91595" i_length="433"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="91596" e_stop="91717" e_length="122"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.995">
            <gDNA_intron_boundary i_start="91718" i_stop="91934" i_length="217"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="91935" e_stop="92074" e_length="140"/>
          </exon>
          <intron i_serial="5" don_prob="0.948" acc_prob="0.111">
            <gDNA_intron_boundary i_start="92075" i_stop="92158" i_length="84"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="92159" e_stop="92231" e_length="73"/>
          </exon>
          <intron i_serial="6" don_prob="0.981" acc_prob="0.959">
            <gDNA_intron_boundary i_start="92232" i_stop="92541" i_length="310"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="92542" e_stop="92630" e_length="89"/>
          </exon>
          <intron i_serial="7" don_prob="0.988" acc_prob="0.623">
            <gDNA_intron_boundary i_start="92631" i_stop="92722" i_length="92"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="92723" e_stop="92828" e_length="106"/>
          </exon>
          <intron i_serial="8" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="92829" i_stop="93558" i_length="730"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="93559" e_stop="93771" e_length="213"/>
          </exon>
          <intron i_serial="9" don_prob="0.976" acc_prob="0.966">
            <gDNA_intron_boundary i_start="93772" i_stop="94590" i_length="819"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="94591" e_stop="94696" e_length="106"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="94697" i_stop="96034" i_length="1338"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="96035" e_stop="96123" e_length="89"/>
          </exon>
          <intron i_serial="11" don_prob="0.994" acc_prob="0.994">
            <gDNA_intron_boundary i_start="96124" i_stop="96261" i_length="138"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="96262" e_stop="96339" e_length="78"/>
          </exon>
          <intron i_serial="12" don_prob="0.989" acc_prob="0.999">
            <gDNA_intron_boundary i_start="96340" i_stop="96817" i_length="478"/>
          </intron>
          <exon e_serial="13" e_score="0.918">
            <gDNA_exon_boundary e_start="96818" e_stop="97086" e_length="269"/>
          </exon>
          <intron i_serial="13" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="97087" i_stop="97157" i_length="71"/>
          </intron>
          <exon e_serial="14" e_score="0.857">
            <gDNA_exon_boundary e_start="97158" e_stop="97164" e_length="7"/>
          </exon>
          <intron i_serial="14" don_prob="0.281" acc_prob="0.724">
            <gDNA_intron_boundary i_start="97165" i_stop="97218" i_length="54"/>
          </intron>
          <exon e_serial="15" e_score="0.901">
            <gDNA_exon_boundary e_start="97219" e_stop="97591" e_length="373"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88450" stop="88719"/>
              <exon start="90694" stop="90978"/>
              <exon start="91075" stop="91121"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88471" stop="88719"/>
              <exon start="90694" stop="90978"/>
              <exon start="91075" stop="91162"/>
              <exon start="91596" stop="91696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88534" stop="88719"/>
              <exon start="90694" stop="90975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88534" stop="88719"/>
              <exon start="90694" stop="90941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418637" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88549" stop="88719"/>
              <exon start="90694" stop="90978"/>
              <exon start="91075" stop="91162"/>
              <exon start="91596" stop="91706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88550" stop="88719"/>
              <exon start="90694" stop="90974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247561" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88560" stop="88719"/>
              <exon start="90694" stop="90978"/>
              <exon start="91075" stop="91162"/>
              <exon start="91596" stop="91694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88560" stop="88719"/>
              <exon start="90694" stop="90978"/>
              <exon start="91075" stop="91100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90784" stop="90978"/>
              <exon start="91075" stop="91162"/>
              <exon start="91596" stop="91717"/>
              <exon start="91935" stop="92046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207615" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91108" stop="91162"/>
              <exon start="91596" stop="91717"/>
              <exon start="91935" stop="92074"/>
              <exon start="92159" stop="92231"/>
              <exon start="92542" stop="92630"/>
              <exon start="92723" stop="92828"/>
              <exon start="93559" stop="93771"/>
              <exon start="94591" stop="94649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91998" stop="92074"/>
              <exon start="92159" stop="92231"/>
              <exon start="92542" stop="92630"/>
              <exon start="92723" stop="92802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438816" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92008" stop="92074"/>
              <exon start="92159" stop="92231"/>
              <exon start="92542" stop="92630"/>
              <exon start="92723" stop="92828"/>
              <exon start="93559" stop="93771"/>
              <exon start="94591" stop="94653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92182" stop="92231"/>
              <exon start="92542" stop="92630"/>
              <exon start="92723" stop="92828"/>
              <exon start="93559" stop="93771"/>
              <exon start="94591" stop="94696"/>
              <exon start="96035" stop="96123"/>
              <exon start="96262" stop="96321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92542" stop="92630"/>
              <exon start="92723" stop="92828"/>
              <exon start="93559" stop="93771"/>
              <exon start="94591" stop="94696"/>
              <exon start="96035" stop="96123"/>
              <exon start="96262" stop="96339"/>
              <exon start="96818" stop="96834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92549" stop="92630"/>
              <exon start="92723" stop="92828"/>
              <exon start="93559" stop="93771"/>
              <exon start="94591" stop="94696"/>
              <exon start="96035" stop="96060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93690" stop="93771"/>
              <exon start="94591" stop="94696"/>
              <exon start="96035" stop="96123"/>
              <exon start="96262" stop="96339"/>
              <exon start="96818" stop="97002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208902" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93719" stop="93771"/>
              <exon start="94591" stop="94696"/>
              <exon start="96035" stop="96123"/>
              <exon start="96262" stop="96339"/>
              <exon start="96818" stop="96835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96325" stop="96339"/>
              <exon start="96818" stop="97086"/>
              <exon start="97158" stop="97164"/>
              <exon start="97219" stop="97591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418057" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCGAAGAGCAAGCACTAGGGTTTTTTGTGGTGCATTCCTATATTTATTGTCTCCACTTTCATTCCCCAAAATTTCTTTTTATTTGAGCTTCATAATTGCCGCAATTAGGCGTTAGTTTCTCCATTATCACACAAACCGTCAATGGCGGGTGACAACGGAAACAAGCAGAATGGAACTTCTTTTGATCTCAATGACTTCACCATCATCAAAGAAGGAGATGCTGAGATTCTTATGCATGCCAAAAATGAAGTTTTCTACAACAATTCCCAG : GTGAATAATAGAGACATGTCTATAGCTGTTTTGAGGACATTTATATCACAACGAAAGCTAGAACATGACGCAATGTTAGCTAGACGAACCAAGGCTGGAAATAAGGCACCTAATGCTAAAGTGGAAAACCCAGGTGATTCAGTGCAGCATAATGGTGAATCCACTGATGGATCGGAAGTCTTGAAAGACGCATCCCATGGTGAATCATCTAGCATTCCAGTGGAACAGAATAAAAATCTGCGGGGAAAAGGCCGAGAAGAACTAAAGCCTCCACGAGTTCTCGAG : GCTCTCTCAGCTTCTGGATTGAGGGCTTTAAGGTATGCTCGTGAAGTAGAAGGAATTAGCCAGGTCGTGGCCCTTGACAATGACAAAG : CCTCTGTGGAAGCTTGCAGGAGAAACATTAAGTTTAATGGTTCAGTGGCATGCTCTAAGGTGGAATCTCACCTTGCTGATGCAAGGGTTTATATGCTTACCCACCCAAACGAATTTGATGTG : GTTGATCTCGATCCTTATGGAGCACCTTCTGTGTTCTTAGACTCAGCAGTCCAATCTGTTGCTGATGGAGGAATGTTGATGTGTACTGCAACTGATATGGCAGTCTTATGTGCAGCAAATGGAGAAGTTTGCTATTCCAA : ATATGGCTCCTATCCTTTGAGAGGAAAATATTGTCATGAAATGGCTTTGCGGATCCTTCTTGCATCTATTGAG : AGCCATGCAAATCGATATAAGAGATATATAGTTCCAGTATTATCTGTTCAGATGGATTTCTATGTTCGCGTTTTTGTTCGTATATACAC : TTCTGCAAGTGATGTGAAAAATACTCCTTTGAAGCTCTCATATGTCTATCAATGCATTGGCTGCGACTCATTTCATCTTCAGACAGTTGGGAGGACAGTCTCAAAG : GATAAGAGTGTCCGATGCCTCCCTGGATTTGGCCCTGCAGTTCCTCAAGAGTGTAGTGATTGTGGTAAGAAATTCAACATGGGTGGACCCATATGGTCTGCCCCCATTCATGATCAAGAATGGGTAGCTGCCATGCTTGCAAATGTGAAATCAATGAAGGAACGCTATCCTGCTTATGAGCGGATCTCTGCTGTATTGACAACTATATCAGAG : GAACTACCTGATATTCCTCTGTTTCTGAGTTTGCACAATCTCTGTGCAACACTAAAATGCACTTCTCCCTCGGCAGTAATATTTCGCTCTGCTGTGATCAACGCAG : GATATCGCATATCAGGGACTCATGTGAATCCTTTGGGGTTGAAAACAGATGCTCCTATGAATGTCATTTGGGATATCATGCGTTGCTGG : GTCAGAAATCATCCTGTGAAAGCACAACCATCTGACCAGTCTGGAAGTGTGATTCTTGCTAAGGAGCCTGTTCTGCAG : GCTAATTTTGCTCGGGCTGTTGCATCCCTTAGCCAGGCACAAGCCAAGAAGGTTGCGCGTTTCCTCCCTAATCCTGAGAGGAATTGGGGTCCAAAACTAAGGGCAGGCCGGCAGATCACCAGTAAGCATGTGTCTCTTTTGGGTCCTAAAGCATTGAATGCAATTAGCAACCATGGGGATGGCGAGGGTAGCAACAATGAGAACGGCGATGTCAGCAACCATGAGAATGGCGATGGTAGCAACCATGAGAATGGTAATGGTAGCAACCA : GCCAAGT : AGTGAGATCCATCTTCTTTCTGATAACTGTGAAAACGTCTATCGATAATGGGGAGGATTTCATCTTGTTTATCTCAAGTATACTTTTTAATTTTTAAAGGTATTTTAGGCTATTTATATTTATTTTGTTTGTCCCTTTTTTCCTTCATTTCAATCTTAATTCCAGTGCTGTATTAAATTTTGTTTTTCATTTTCATTTATCAGAAAACTACTCTGTAACATGGCTTGCGTTGTCTATTTGATCTTTTATGTCGACGAACATTAGTTAATATTTCTTCTGATGCTTGACGATTAAAGTAATTCCATAATATTGATAAAAAGATGATACTGCTCTGAGTTAAATTCAGAGAAAGTTGCTCTCTGTTTTGTCTAAC</gDNA_template>
            <first_frame> P  K  S  K  H  *  G  F  L  W  C  I  P  I  F  I  V  S  T  F  I  P  Q  N  F  F  L  F  E  L  H  N  C  R  N  *  A  L  V  S  P  L  S  H  K  P  S  M  A  G  D  N  G  N  K  Q  N  G  T  S  F  D  L  N  D  F  T  I  I  K  E  G  D  A  E  I  L  M  H  A  K  N  E  V  F  Y  N  N  S  Q  :  V  N  N  R  D  M  S  I  A  V  L  R  T  F  I  S  Q  R  K  L  E  H  D  A  M  L  A  R  R  T  K  A  G  N  K  A  P  N  A  K  V  E  N  P  G  D  S  V  Q  H  N  G  E  S  T  D  G  S  E  V  L  K  D  A  S  H  G  E  S  S  S  I  P  V  E  Q  N  K  N  L  R  G  K  G  R  E  E  L  K  P  P  R  V  L  E  :  A  L  S  A  S  G  L  R  A  L  R  Y  A  R  E  V  E  G  I  S  Q  V  V  A  L  D  N  D  K   : A  S  V  E  A  C  R  R  N  I  K  F  N  G  S  V  A  C  S  K  V  E  S  H  L  A  D  A  R  V  Y  M  L  T  H  P  N  E  F  D  V  :  V  D  L  D  P  Y  G  A  P  S  V  F  L  D  S  A  V  Q  S  V  A  D  G  G  M  L  M  C  T  A  T  D  M  A  V  L  C  A  A  N  G  E  V  C  Y  S  K :   Y  G  S  Y  P  L  R  G  K  Y  C  H  E  M  A  L  R  I  L  L  A  S  I  E  :  S  H  A  N  R  Y  K  R  Y  I  V  P  V  L  S  V  Q  M  D  F  Y  V  R  V  F  V  R  I  Y  T :   S  A  S  D  V  K  N  T  P  L  K  L  S  Y  V  Y  Q  C  I  G  C  D  S  F  H  L  Q  T  V  G  R  T  V  S  K  :  D  K  S  V  R  C  L  P  G  F  G  P  A  V  P  Q  E  C  S  D  C  G  K  K  F  N  M  G  G  P  I  W  S  A  P  I  H  D  Q  E  W  V  A  A  M  L  A  N  V  K  S  M  K  E  R  Y  P  A  Y  E  R  I  S  A  V  L  T  T  I  S  E  :  E  L  P  D  I  P  L  F  L  S  L  H  N  L  C  A  T  L  K  C  T  S  P  S  A  V  I  F  R  S  A  V  I  N  A   : G  Y  R  I  S  G  T  H  V  N  P  L  G  L  K  T  D  A  P  M  N  V  I  W  D  I  M  R  C  W  :  V  R  N  H  P  V  K  A  Q  P  S  D  Q  S  G  S  V  I  L  A  K  E  P  V  L  Q  :  A  N  F  A  R  A  V  A  S  L  S  Q  A  Q  A  K  K  V  A  R  F  L  P  N  P  E  R  N  W  G  P  K  L  R  A  G  R  Q  I  T  S  K  H  V  S  L  L  G  P  K  A  L  N  A  I  S  N  H  G  D  G  E  G  S  N  N  E  N  G  D  V  S  N  H  E  N  G  D  G  S  N  H  E  N  G  N  G  S  N  Q :   P  S  :  S  E  I  H  L  L  S  D  N  C  E  N  V  Y  R  *  W  G  G  F  H  L  V  Y  L  K  Y  T  F  *  F  L  K  V  F  *  A  I  Y  I  Y  F  V  C  P  F  F  P  S  F  Q  S  *  F  Q  C  C  I  K  F  C  F  S  F  S  F  I  R  K  L  L  C  N  M  A  C  V  V  Y  L  I  F  Y  V  D  E  H  *  L  I  F  L  L  M  L  D  D  *  S  N  S  I  I  L  I  K  R  *  Y  C  S  E  L  N  S  E  K  V  A  L  C  F  V  *  </first_frame>
            <second_frame>  R  R  A  S  T  R  V  F  C  G  A  F  L  Y  L  L  S  P  L  S  F  P  K  I  S  F  Y  L  S  F  I  I  A  A  I  R  R  *  F  L  H  Y  H  T  N  R  Q  W  R  V  T  T  E  T  S  R  M  E  L  L  L  I  S  M  T  S  P  S  S  K  K  E  M  L  R  F  L  C  M  P  K  M  K  F  S  T  T  I  P  R :   *  I  I  E  T  C  L  *  L  F  *  G  H  L  Y  H  N  E  S  *  N  M  T  Q  C  *  L  D  E  P  R  L  E  I  R  H  L  M  L  K  W  K  T  Q  V  I  Q  C  S  I  M  V  N  P  L  M  D  R  K  S  *  K  T  H  P  M  V  N  H  L  A  F  Q  W  N  R  I  K  I  C  G  E  K  A  E  K  N  *  S  L  H  E  F  S  R :   L  S  Q  L  L  D  *  G  L  *  G  M  L  V  K  *  K  E  L  A  R  S  W  P  L  T  M  T  K  :  P  L  W  K  L  A  G  E  T  L  S  L  M  V  Q  W  H  A  L  R  W  N  L  T  L  L  M  Q  G  F  I  C  L  P  T  Q  T  N  L  M  W :   L  I  S  I  L  M  E  H  L  L  C  S  *  T  Q  Q  S  N  L  L  L  M  E  E  C  *  C  V  L  Q  L  I  W  Q  S  Y  V  Q  Q  M  E  K  F  A  I  P   : N  M  A  P  I  L  *  E  E  N  I  V  M  K  W  L  C  G  S  F  L  H  L  L  R :   A  M  Q  I  D  I  R  D  I  *  F  Q  Y  Y  L  F  R  W  I  S  M  F  A  F  L  F  V  Y  T   : L  L  Q  V  M  *  K  I  L  L  *  S  S  H  M  S  I  N  A  L  A  A  T  H  F  I  F  R  Q  L  G  G  Q  S  Q  R :   I  R  V  S  D  A  S  L  D  L  A  L  Q  F  L  K  S  V  V  I  V  V  R  N  S  T  W  V  D  P  Y  G  L  P  P  F  M  I  K  N  G  *  L  P  C  L  Q  M  *  N  Q  *  R  N  A  I  L  L  M  S  G  S  L  L  Y  *  Q  L  Y  Q  R :   N  Y  L  I  F  L  C  F  *  V  C  T  I  S  V  Q  H  *  N  A  L  L  P  R  Q  *  Y  F  A  L  L  *  S  T  Q  :  D  I  A  Y  Q  G  L  M  *  I  L  W  G  *  K  Q  M  L  L  *  M  S  F  G  I  S  C  V  A  G :   S  E  I  I  L  *  K  H  N  H  L  T  S  L  E  V  *  F  L  L  R  S  L  F  C  R :   L  I  L  L  G  L  L  H  P  L  A  R  H  K  P  R  R  L  R  V  S  S  L  I  L  R  G  I  G  V  Q  N  *  G  Q  A  G  R  S  P  V  S  M  C  L  F  W  V  L  K  H  *  M  Q  L  A  T  M  G  M  A  R  V  A  T  M  R  T  A  M  S  A  T  M  R  M  A  M  V  A  T  M  R  M  V  M  V  A  T   : S  Q  V :   V  R  S  I  F  F  L  I  T  V  K  T  S  I  D  N  G  E  D  F  I  L  F  I  S  S  I  L  F  N  F  *  R  Y  F  R  L  F  I  F  I  L  F  V  P  F  F  L  H  F  N  L  N  S  S  A  V  L  N  F  V  F  H  F  H  L  S  E  N  Y  S  V  T  W  L  A  L  S  I  *  S  F  M  S  T  N  I  S  *  Y  F  F  *  C  L  T  I  K  V  I  P  *  Y  *  *  K  D  D  T  A  L  S  *  I  Q  R  K  L  L  S  V  L  S  N </second_frame>
            <third_frame>   E  E  Q  A  L  G  F  F  V  V  H  S  Y  I  Y  C  L  H  F  H  S  P  K  F  L  F  I  *  A  S  *  L  P  Q  L  G  V  S  F  S  I  I  T  Q  T  V  N  G  G  *  Q  R  K  Q  A  E  W  N  F  F  *  S  Q  *  L  H  H  H  Q  R  R  R  C  *  D  S  Y  A  C  Q  K  *  S  F  L  Q  Q  F  P   : G  E  *  *  R  H  V  Y  S  C  F  E  D  I  Y  I  T  T  K  A  R  T  *  R  N  V  S  *  T  N  Q  G  W  K  *  G  T  *  C  *  S  G  K  P  R  *  F  S  A  A  *  W  *  I  H  *  W  I  G  S  L  E  R  R  I  P  W  *  I  I  *  H  S  S  G  T  E  *  K  S  A  G  K  R  P  R  R  T  K  A  S  T  S  S  R   : G  S  L  S  F  W  I  E  G  F  K  V  C  S  *  S  R  R  N  *  P  G  R  G  P  *  Q  *  Q  S :   L  C  G  S  L  Q  E  K  H  *  V  *  W  F  S  G  M  L  *  G  G  I  S  P  C  *  C  K  G  L  Y  A  Y  P  P  K  R  I  *  C   : G  *  S  R  S  L  W  S  T  F  C  V  L  R  L  S  S  P  I  C  C  *  W  R  N  V  D  V  Y  C  N  *  Y  G  S  L  M  C  S  K  W  R  S  L  L  F  Q  :  I  W  L  L  S  F  E  R  K  I  L  S  *  N  G  F  A  D  P  S  C  I  Y  *   : E  P  C  K  S  I  *  E  I  Y  S  S  S  I  I  C  S  D  G  F  L  C  S  R  F  C  S  Y  I  H  :  F  C  K  *  C  E  K  Y  S  F  E  A  L  I  C  L  S  M  H  W  L  R  L  I  S  S  S  D  S  W  E  D  S  L  K   : G  *  E  C  P  M  P  P  W  I  W  P  C  S  S  S  R  V  *  *  L  W  *  E  I  Q  H  G  W  T  H  M  V  C  P  H  S  *  S  R  M  G  S  C  H  A  C  K  C  E  I  N  E  G  T  L  S  C  L  *  A  D  L  C  C  I  D  N  Y  I  R   : G  T  T  *  Y  S  S  V  S  E  F  A  Q  S  L  C  N  T  K  M  H  F  S  L  G  S  N  I  S  L  C  C  D  Q  R  R :   I  S  H  I  R  D  S  C  E  S  F  G  V  E  N  R  C  S  Y  E  C  H  L  G  Y  H  A  L  L   : G  Q  K  S  S  C  E  S  T  T  I  *  P  V  W  K  C  D  S  C  *  G  A  C  S  A   : G  *  F  C  S  G  C  C  I  P  *  P  G  T  S  Q  E  G  C  A  F  P  P  *  S  *  E  E  L  G  S  K  T  K  G  R  P  A  D  H  Q  *  A  C  V  S  F  G  S  *  S  I  E  C  N  *  Q  P  W  G  W  R  G  *  Q  Q  *  E  R  R  C  Q  Q  P  *  E  W  R  W  *  Q  P  *  E  W  *  W  *  Q  P  :  A  K   : *  *  D  P  S  S  F  *  *  L  *  K  R  L  S  I  M  G  R  I  S  S  C  L  S  Q  V  Y  F  L  I  F  K  G  I  L  G  Y  L  Y  L  F  C  L  S  L  F  S  F  I  S  I  L  I  P  V  L  Y  *  I  L  F  F  I  F  I  Y  Q  K  T  T  L  *  H  G  L  R  C  L  F  D  L  L  C  R  R  T  L  V  N  I  S  S  D  A  *  R  L  K  *  F  H  N  I  D  K  K  M  I  L  L  *  V  K  F  R  E  S  C  S  L  F  C  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0092M23.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88558" stop="88719"/>
                    <exon start="90694" stop="90978"/>
                    <exon start="91075" stop="91162"/>
                    <exon start="91596" stop="91717"/>
                    <exon start="91935" stop="92074"/>
                    <exon start="92159" stop="92231"/>
                    <exon start="92542" stop="92630"/>
                    <exon start="92723" stop="92828"/>
                    <exon start="93559" stop="93771"/>
                    <exon start="94591" stop="94696"/>
                    <exon start="96035" stop="96123"/>
                    <exon start="96262" stop="96339"/>
                    <exon start="96818" stop="97086"/>
                    <exon start="97158" stop="97164"/>
                    <exon start="97219" stop="97266"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1872</number_coding_nucleotides>
                  <number_encoded_amino_acids>624</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALVSPLSHKPSMAGDNGNKQNGTSFDLNDFTIIKEGDAEILMHAKNEVFYNNSQVNNRDMSIAVLRTFISQRKLEHDAMLARRTKAGNKAPNAKVENPGDSVQHNGESTDGSEVLKDASHGESSSIPVEQNKNLRGKGREELKPPRVLEALSASGLRALRYAREVEGISQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPNEFDVVDLDPYGAPSVFLDSAVQSVADGGMLMCTATDMAVLCAANGEVCYSKYGSYPLRGKYCHEMALRILLASIESHANRYKRYIVPVLSVQMDFYVRVFVRIYTSASDVKNTPLKLSYVYQCIGCDSFHLQTVGRTVSKDKSVRCLPGFGPAVPQECSDCGKKFNMGGPIWSAPIHDQEWVAAMLANVKSMKERYPAYERISAVLTTISEELPDIPLFLSLHNLCATLKCTSPSAVIFRSAVINAGYRISGTHVNPLGLKTDAPMNVIWDIMRCWVRNHPVKAQPSDQSGSVILAKEPVLQANFARAVASLSQAQAKKVARFLPNPERNWGPKLRAGRQITSKHVSLLGPKALNAISNHGDGEGSNNENGDVSNHENGDGSNHENGNGSNQPSSEIHLLSDNCENVYR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="94239" e_stop="94696"/>
            <exon e_start="96035" e_stop="96123"/>
            <exon e_start="96262" e_stop="96339"/>
            <exon e_start="96818" e_stop="97481"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="94239" e_stop="94696" e_length="458"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="94697" i_stop="96034" i_length="1338"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="96035" e_stop="96123" e_length="89"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.994">
            <gDNA_intron_boundary i_start="96124" i_stop="96261" i_length="138"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="96262" e_stop="96339" e_length="78"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.999">
            <gDNA_intron_boundary i_start="96340" i_stop="96817" i_length="478"/>
          </intron>
          <exon e_serial="4" e_score="0.917">
            <gDNA_exon_boundary e_start="96818" e_stop="97481" e_length="664"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94239" stop="94696"/>
              <exon start="96035" stop="96123"/>
              <exon start="96262" stop="96339"/>
              <exon start="96818" stop="97016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96035" stop="96123"/>
              <exon start="96262" stop="96339"/>
              <exon start="96818" stop="97437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589691" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96105" stop="96123"/>
              <exon start="96262" stop="96339"/>
              <exon start="96818" stop="97432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418638" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96913" stop="97481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96926" stop="97284"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96999" stop="97437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97115" stop="97437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E614744" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACAAATGTGAAGGTTGATCTTGTAATGGGGCTTCGAATTTGTTGAAGGAAAATATAAATTCAGTTAGGAATGCCAGTCCTTCAATCCACTCACAGTTCTACATTGATGAATTTGACAAGTAATGGCATGACTTTTACTGCTGGCACAGCAGCGCAATTTTTTTGGGGGGCAAAGAAACTTTTGTCCTTCACTCGTTATTTGGAGACATTTGTTATTCACTGCAGATCCTATTGATGAGAAATAGTTCAATCAGTTATTTATTCAGTGCAGATCATATTGACGAGGAACAGTTTTATCGGTTATTTTTGGTGGATGTTTTCTAAATTCTGATCCAAGAGTGTGCTTTTGCAGGAACTACCTGATATTCCTCTGTTTCTGAGTTTGCACAATCTCTGTGCAACACTAAAATGCACTTCTCCCTCGGCAGTAATATTTCGCTCTGCTGTGATCAACGCAG : GATATCGCATATCAGGGACTCATGTGAATCCTTTGGGGTTGAAAACAGATGCTCCTATGAATGTCATTTGGGATATCATGCGTTGCTGG : GTCAGAAATCATCCTGTGAAAGCACAACCATCTGACCAGTCTGGAAGTGTGATTCTTGCTAAGGAGCCTGTTCTGCAG : GCTAATTTTGCTCGGGCTGTTGCATCCCTTAGCCAGGCACAAGCCAAGAAGGTTGCGCGTTTCCTCCCTAATCCTGAGAGGAATTGGGGTCCAAAACTAAGGGCAGGCCGGCAGATCACCAGTAAGCATGTGTCTCTTTTGGGTCCTAAAGCATTGAATGCAATTAGCAACCATGGGGATGGCGAGGGTAGCAACAATGAGAACGGCGATGTCAGCAACCATGAGAATGGCGATGGTAGCAACCATGAGAATGGTAATGGTAGCAACCATGAGGATGTCGAGGAGCCTGCAGCCAAGCGTAAGAAGACCGAAGAATCTGATTCATAACTTATATATCTTGGCCAAGTGTCTGCAGTTTTTATCCCATCATAATCCATCTCTTCTGCTGCATTTTCTTGCAGAGTGAGATCCATCTTCTTTCTGATAACTGTGAAAACGTCTATCGATAATGGGGAGGATTTCATCTTGTTTATCTCAAGTATACTTTTTAATTTTTAAAGGTATTTTAGGCTATTTATATTTATTTTGTTTGTCCCTTTTTTCCTTCATTTCAATCTTAATTCCAGTGCTGTATTAAATTTTGTTTTTCATTTTCATTTATCAGAAAACTACTCTGTAACATGGCTTGCGTTGTCTATTTGATCTTTTATGTCGACGAACATTA</gDNA_template>
            <first_frame> H  K  C  E  G  *  S  C  N  G  A  S  N  L  L  K  E  N  I  N  S  V  R  N  A  S  P  S  I  H  S  Q  F  Y  I  D  E  F  D  K  *  W  H  D  F  Y  C  W  H  S  S  A  I  F  L  G  G  K  E  T  F  V  L  H  S  L  F  G  D  I  C  Y  S  L  Q  I  L  L  M  R  N  S  S  I  S  Y  L  F  S  A  D  H  I  D  E  E  Q  F  Y  R  L  F  L  V  D  V  F  *  I  L  I  Q  E  C  A  F  A  G  T  T  *  Y  S  S  V  S  E  F  A  Q  S  L  C  N  T  K  M  H  F  S  L  G  S  N  I  S  L  C  C  D  Q  R  R :   I  S  H  I  R  D  S  C  E  S  F  G  V  E  N  R  C  S  Y  E  C  H  L  G  Y  H  A  L  L   : G  Q  K  S  S  C  E  S  T  T  I  *  P  V  W  K  C  D  S  C  *  G  A  C  S  A   : G  *  F  C  S  G  C  C  I  P  *  P  G  T  S  Q  E  G  C  A  F  P  P  *  S  *  E  E  L  G  S  K  T  K  G  R  P  A  D  H  Q  *  A  C  V  S  F  G  S  *  S  I  E  C  N  *  Q  P  W  G  W  R  G  *  Q  Q  *  E  R  R  C  Q  Q  P  *  E  W  R  W  *  Q  P  *  E  W  *  W  *  Q  P  *  G  C  R  G  A  C  S  Q  A  *  E  D  R  R  I  *  F  I  T  Y  I  S  W  P  S  V  C  S  F  Y  P  I  I  I  H  L  F  C  C  I  F  L  Q  S  E  I  H  L  L  S  D  N  C  E  N  V  Y  R  *  W  G  G  F  H  L  V  Y  L  K  Y  T  F  *  F  L  K  V  F  *  A  I  Y  I  Y  F  V  C  P  F  F  P  S  F  Q  S  *  F  Q  C  C  I  K  F  C  F  S  F  S  F  I  R  K  L  L  C  N  M  A  C  V  V  Y  L  I  F  Y  V  D  E  H   </first_frame>
            <second_frame>  T  N  V  K  V  D  L  V  M  G  L  R  I  C  *  R  K  I  *  I  Q  L  G  M  P  V  L  Q  S  T  H  S  S  T  L  M  N  L  T  S  N  G  M  T  F  T  A  G  T  A  A  Q  F  F  W  G  A  K  K  L  L  S  F  T  R  Y  L  E  T  F  V  I  H  C  R  S  Y  *  *  E  I  V  Q  S  V  I  Y  S  V  Q  I  I  L  T  R  N  S  F  I  G  Y  F  W  W  M  F  S  K  F  *  S  K  S  V  L  L  Q  E  L  P  D  I  P  L  F  L  S  L  H  N  L  C  A  T  L  K  C  T  S  P  S  A  V  I  F  R  S  A  V  I  N  A   : G  Y  R  I  S  G  T  H  V  N  P  L  G  L  K  T  D  A  P  M  N  V  I  W  D  I  M  R  C  W  :  V  R  N  H  P  V  K  A  Q  P  S  D  Q  S  G  S  V  I  L  A  K  E  P  V  L  Q  :  A  N  F  A  R  A  V  A  S  L  S  Q  A  Q  A  K  K  V  A  R  F  L  P  N  P  E  R  N  W  G  P  K  L  R  A  G  R  Q  I  T  S  K  H  V  S  L  L  G  P  K  A  L  N  A  I  S  N  H  G  D  G  E  G  S  N  N  E  N  G  D  V  S  N  H  E  N  G  D  G  S  N  H  E  N  G  N  G  S  N  H  E  D  V  E  E  P  A  A  K  R  K  K  T  E  E  S  D  S  *  L  I  Y  L  G  Q  V  S  A  V  F  I  P  S  *  S  I  S  S  A  A  F  S  C  R  V  R  S  I  F  F  L  I  T  V  K  T  S  I  D  N  G  E  D  F  I  L  F  I  S  S  I  L  F  N  F  *  R  Y  F  R  L  F  I  F  I  L  F  V  P  F  F  L  H  F  N  L  N  S  S  A  V  L  N  F  V  F  H  F  H  L  S  E  N  Y  S  V  T  W  L  A  L  S  I  *  S  F  M  S  T  N  I  </second_frame>
            <third_frame>   Q  M  *  R  L  I  L  *  W  G  F  E  F  V  E  G  K  Y  K  F  S  *  E  C  Q  S  F  N  P  L  T  V  L  H  *  *  I  *  Q  V  M  A  *  L  L  L  L  A  Q  Q  R  N  F  F  G  G  Q  R  N  F  C  P  S  L  V  I  W  R  H  L  L  F  T  A  D  P  I  D  E  K  *  F  N  Q  L  F  I  Q  C  R  S  Y  *  R  G  T  V  L  S  V  I  F  G  G  C  F  L  N  S  D  P  R  V  C  F  C  R  N  Y  L  I  F  L  C  F  *  V  C  T  I  S  V  Q  H  *  N  A  L  L  P  R  Q  *  Y  F  A  L  L  *  S  T  Q  :  D  I  A  Y  Q  G  L  M  *  I  L  W  G  *  K  Q  M  L  L  *  M  S  F  G  I  S  C  V  A  G :   S  E  I  I  L  *  K  H  N  H  L  T  S  L  E  V  *  F  L  L  R  S  L  F  C  R :   L  I  L  L  G  L  L  H  P  L  A  R  H  K  P  R  R  L  R  V  S  S  L  I  L  R  G  I  G  V  Q  N  *  G  Q  A  G  R  S  P  V  S  M  C  L  F  W  V  L  K  H  *  M  Q  L  A  T  M  G  M  A  R  V  A  T  M  R  T  A  M  S  A  T  M  R  M  A  M  V  A  T  M  R  M  V  M  V  A  T  M  R  M  S  R  S  L  Q  P  S  V  R  R  P  K  N  L  I  H  N  L  Y  I  L  A  K  C  L  Q  F  L  S  H  H  N  P  S  L  L  L  H  F  L  A  E  *  D  P  S  S  F  *  *  L  *  K  R  L  S  I  M  G  R  I  S  S  C  L  S  Q  V  Y  F  L  I  F  K  G  I  L  G  Y  L  Y  L  F  C  L  S  L  F  S  F  I  S  I  L  I  P  V  L  Y  *  I  L  F  F  I  F  I  Y  Q  K  T  T  L  *  H  G  L  R  C  L  F  D  L  L  C  R  R  T  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0092M23.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94570" stop="94696"/>
                    <exon start="96035" stop="96123"/>
                    <exon start="96262" stop="96339"/>
                    <exon start="96818" stop="97144"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>618</number_coding_nucleotides>
                  <number_encoded_amino_acids>206</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKSVLLQELPDIPLFLSLHNLCATLKCTSPSAVIFRSAVINAGYRISGTHVNPLGLKTDAPMNVIWDIMRCWVRNHPVKAQPSDQSGSVILAKEPVLQANFARAVASLSQAQAKKVARFLPNPERNWGPKLRAGRQITSKHVSLLGPKALNAISNHGDGEGSNNENGDVSNHENGDGSNHENGNGSNHEDVEEPAAKRKKTEESDS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0092M23.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94362" stop="94562"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WHDFYCWHSSAIFLGGKETFVLHSLFGDICYSLQILLMRNSSISYLFSADHIDEEQFYRLFLVDVF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="99431" PGL_stop="98646"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99431" e_stop="99091"/>
            <exon e_start="98996" e_stop="98746"/>
            <exon e_start="98667" e_stop="98646"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.905" acc_prob="1.000" e_score="0.988"/>
          <exon-intron don_prob="0.996" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="99431" e_stop="99091" e_length="341"/>
          </exon>
          <intron i_serial="1" don_prob="0.905" acc_prob="1.000">
            <gDNA_intron_boundary i_start="99090" i_stop="98997" i_length="94"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="98996" e_stop="98746" e_length="251"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.997">
            <gDNA_intron_boundary i_start="98745" i_stop="98668" i_length="78"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="98667" e_stop="98646" e_length="22"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99431" stop="99091"/>
              <exon start="98996" stop="98746"/>
              <exon start="98667" stop="98646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328126" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAAATTTAAAAAGAAAAAAAAAAAATCTCTCGAAATGGCTACTGTTCCTTTGAAAGATGAGCTAGACATTGTGATACCAACGATTAGAAACTTAGATTTTCTTGAGATGTGGAGGCCATTTTTCGAACAATATCATTTAATTATTGTGCAAGATGGTGATCCTTCAAAGACTATTAAAGTTCCTGATGGCTTTGATTATGAGCTCTACAATCGTAATGATATTAACAAAATTTTGGGTCCGAGGGCTTCTTGTATTTCGTTCAAAGACTCGGCTTGTCGTTGCTTTGGTTACATGGTGTCCAAGAAGAAGTATATTTACACTATTGATGATGATTGCTTC : GTTGCAAAGGACCCAAGTGGGAAAGATATTAATGCATTGGAACAACACATAAAGAATCTTCTTTGTCCATCAACTCCCTATTTTTTCAACACACTTTATGATCCATTTAGAGATGGTGCTGATTTTGTGCGTGGATACCCTTTTAGTCTACGTGAGGGTGTTTCAACTGCAGTCTCTCATGGATTATGGCTCAACATTCCTGATTATGATGCACCTACTCAACTTGTCAAGCCTCTTGAGAGGAATACTAG : GTACGTTGATACGGTGTTGACG</gDNA_template>
            <first_frame> Q  N  L  K  R  K  K  K  N  L  S  K  W  L  L  F  L  *  K  M  S  *  T  L  *  Y  Q  R  L  E  T  *  I  F  L  R  C  G  G  H  F  S  N  N  I  I  *  L  L  C  K  M  V  I  L  Q  R  L  L  K  F  L  M  A  L  I  M  S  S  T  I  V  M  I  L  T  K  F  W  V  R  G  L  L  V  F  R  S  K  T  R  L  V  V  A  L  V  T  W  C  P  R  R  S  I  F  T  L  L  M  M  I  A  S :   L  Q  R  T  Q  V  G  K  I  L  M  H  W  N  N  T  *  R  I  F  F  V  H  Q  L  P  I  F  S  T  H  F  M  I  H  L  E  M  V  L  I  L  C  V  D  T  L  L  V  Y  V  R  V  F  Q  L  Q  S  L  M  D  Y  G  S  T  F  L  I  M  M  H  L  L  N  L  S  S  L  L  R  G  I  L   : G  T  L  I  R  C  *   </first_frame>
            <second_frame>  K  I  *  K  E  K  K  K  I  S  R  N  G  Y  C  S  F  E  R  *  A  R  H  C  D  T  N  D  *  K  L  R  F  S  *  D  V  E  A  I  F  R  T  I  S  F  N  Y  C  A  R  W  *  S  F  K  D  Y  *  S  S  *  W  L  *  L  *  A  L  Q  S  *  *  Y  *  Q  N  F  G  S  E  G  F  L  Y  F  V  Q  R  L  G  L  S  L  L  W  L  H  G  V  Q  E  E  V  Y  L  H  Y  *  *  *  L  L   : R  C  K  G  P  K  W  E  R  Y  *  C  I  G  T  T  H  K  E  S  S  L  S  I  N  S  L  F  F  Q  H  T  L  *  S  I  *  R  W  C  *  F  C  A  W  I  P  F  *  S  T  *  G  C  F  N  C  S  L  S  W  I  M  A  Q  H  S  *  L  *  C  T  Y  S  T  C  Q  A  S  *  E  E  Y  *  :  V  R  *  Y  G  V  D  </second_frame>
            <third_frame>   K  F  K  K  K  K  K  K  S  L  E  M  A  T  V  P  L  K  D  E  L  D  I  V  I  P  T  I  R  N  L  D  F  L  E  M  W  R  P  F  F  E  Q  Y  H  L  I  I  V  Q  D  G  D  P  S  K  T  I  K  V  P  D  G  F  D  Y  E  L  Y  N  R  N  D  I  N  K  I  L  G  P  R  A  S  C  I  S  F  K  D  S  A  C  R  C  F  G  Y  M  V  S  K  K  K  Y  I  Y  T  I  D  D  D  C  F  :  V  A  K  D  P  S  G  K  D  I  N  A  L  E  Q  H  I  K  N  L  L  C  P  S  T  P  Y  F  F  N  T  L  Y  D  P  F  R  D  G  A  D  F  V  R  G  Y  P  F  S  L  R  E  G  V  S  T  A  V  S  H  G  L  W  L  N  I  P  D  Y  D  A  P  T  Q  L  V  K  P  L  E  R  N  T  R :   Y  V  D  T  V  L  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0092M23.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99429" stop="99091"/>
                    <exon start="98996" stop="98746"/>
                    <exon start="98667" stop="98646"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>612</number_coding_nucleotides>
                  <number_encoded_amino_acids>204</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFKKKKKKSLEMATVPLKDELDIVIPTIRNLDFLEMWRPFFEQYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINKILGPRASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPYFFNTLYDPFRDGADFVRGYPFSLREGVSTAVSHGLWLNIPDYDAPTQLVKPLERNTRYVDTVLT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="104304" PGL_stop="104035"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104304" e_stop="104264"/>
            <exon e_start="104165" e_stop="104035"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="104304" e_stop="104264" e_length="41"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="1.000">
            <gDNA_intron_boundary i_start="104263" i_stop="104166" i_length="98"/>
          </intron>
          <exon e_serial="2" e_score="0.977">
            <gDNA_exon_boundary e_start="104165" e_stop="104035" e_length="131"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104304" stop="104264"/>
              <exon start="104165" stop="104035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222097" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAATTTCCACATTTCTTCATTACTTCGTAACAAAATACAG : ATGGGAAGAAATAGGTGGAGATAAACTGATGAAATTCCCAAGAGTTGAAGCACCAAATGGTCTACGGATTAGAGTTTCAGCTCACTAACTATCAATTCATGAATGTACAGAGAAAAAAAAATTCAAAAAAA</gDNA_template>
            <first_frame> E  I  S  T  F  L  H  Y  F  V  T  K  Y  R :   W  E  E  I  G  G  D  K  L  M  K  F  P  R  V  E  A  P  N  G  L  R  I  R  V  S  A  H  *  L  S  I  H  E  C  T  E  K  K  K  F  K  K  </first_frame>
            <second_frame>  K  F  P  H  F  F  I  T  S  *  Q  N  T   : D  G  K  K  *  V  E  I  N  *  *  N  S  Q  E  L  K  H  Q  M  V  Y  G  L  E  F  Q  L  T  N  Y  Q  F  M  N  V  Q  R  K  K  N  S  K  K </second_frame>
            <third_frame>   N  F  H  I  S  S  L  L  R  N  K  I  Q  :  M  G  R  N  R  W  R  *  T  D  E  I  P  K  S  *  S  T  K  W  S  T  D  *  S  F  S  S  L  T  I  N  S  *  M  Y  R  E  K  K  I  Q  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLe0092M23.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 389 chains have been computed
$ 
$ memory statistics:
$ 523944 bytes spliced alignments in total
$ 221 spliced alignments have been stored
$ 2370 bytes was the average size of a spliced alignment
$ 26832 bytes predicted gene locations in total
$ 12 predicted gene locations have been stored
$ 2236 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 409 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 11:08:18
-->
