<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 11:08:32"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U576741" ref_strand="+" ref_description="SGN-U576741 Tomato 200607#2 [25 ESTs aligned] (*GB) gi|157341307|emb|CAO49214.1| (e_value=2e-81) unnamed; (*ATH) AT3G02290.1 (e_value=4e-68) | Symbol: None | zinc finger (C3HC4-type RING finger) family protein, contains zinc finger motif, C3HC4 type (RING finger) | chr3:458443-461026 FORWARD | Aliases: F14P3.6, F14P3_6; (*SWP) sp|Q8LE94|RING3_ARATH (e_value=4e-67) E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana GN=At3g02290/At3g02291; ">
      <seq>cagtcattgtgtagatagaaaaaataaaaaagaaaccctttgacctctgaaattatctatttttatctttctctctattatccccgcaatctccgctattttcaggtgatacacaacagtttttgaaattttttctgaaggtcttggtcatgaagggcatcaactcattcagggtttcctgaagagagagggtgcccaattgcattttccgtaagttatattcttacaagttttgcatccataaccatctaatcacaagaatggaggattgacaatgatagccgtggaaggtttttgagttacgaacatttatttgaagacatcatcatgggtgcagtttgttgctgcttgcgagatgaatgtgaagattttgccaatccaaacagctcaatatataggaactgcttatgccttcgatgttttgttcaaaacttcttgcatatgtatgcatcattgtttcatagaggagaacaacatgccattgcttcatccactcaaggtacaacatctttgagctcctcagcatcccttgataactcactatctgatatgtaccgctctcctccaagaccacttccttacgatgctgatccaagatacttccgcttgcaacgtgatgggctagtctcaagaagggagaaaggctcaagtcattcacatgaggaaactgaaccactacgaagaagtgatattgatgatgattctgaatctttgggtatgggcaataaatggaaggagtctgtatgtgaagaaggatcaaaagaatataattccaagtcattgaaattctcaacagctaaaacaactactgagtttactcaaatttgttattcttcagaagatgaagatgtctgcccgacatgtcttgaagaatatactgaagaaaacccaaaaataatgacaaaatgctctcaccacttccacttgggttgcatatatgagtggatggagagaagtgacaactgtccagtatgcggcaaggtgatgctattcaacgagtcgccatgatctttgctcttaaaaagctttagtcgtggatgaaaccagaaggagataagggcaacaactagtaaaccagaaaagctaatcaacgtaaagtcattgtgaatatctgtgcagctaaatgtgtgaccatacatcagtaaaaatgaaattactgttctctctgtttggaactttcgagttcatattgatcatttgatgcaacagaaaacagtttcaaagtacatcatgtaatcttgttttgatttgatgagtgatttctcccagtgtatagcacattgttcctactttcacaagttgaatgttggcacatttgtctgccaaaatcactggatctgatactattttatatctgttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="+" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="40658" stop="46716"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40955" g_stop="41059" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41060" i_stop="41735" i_length="676">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41736" g_stop="42074" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="444" r_length="339" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42075" i_stop="42839" i_length="765">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42840" g_stop="43266" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="871" r_length="427" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43267" i_stop="43567" i_length="301">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.753" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43568" g_stop="43677" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="872" r_stop="981" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43678" i_stop="46036" i_length="2359">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="46037" g_stop="46416" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="982" r_stop="1361" r_length="380" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="+" ref_id="SGN-U576741" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1361</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U576741" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40955" e_stop="41059"/>
          <exon e_start="41736" e_stop="42074"/>
          <exon e_start="42840" e_stop="43266"/>
          <exon e_start="43568" e_stop="43677"/>
          <exon e_start="46037" e_stop="46416"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTCATTGTGTAGATAGAAAAAATAAAAAAGAAACCCTTTGACCTCTGAAATTATCTATTTTTATCTTTCTCTCTATTATCCCCGCAATCTCCGCTATTTTCAGGTACTTTTCTTGATTTCTTGATTTTTTTTTATCACTGTATTTTACGCTCACTTTTATCTATCTCCTACTGATTGGAGCTTTAATCGATTGTAAACTGTTATGAACTGAAATGGGTTTCATCGGAATCGGTTGATGCAGAGATTTTCACGGTAAAGTTCTGTTTTTTAGGGATCGATAATGCAATTTCTTGATTTGAATTGTAGAAATCTTGATTTTCTTGATTCTTGATCACTGTTGGTGTTGTTTTGTTGATCATTTTTTGTTTTAATTTTTTCTTGTTTTCGGTTTAGCTGTGTCTTTAACACTGTTGTATGAGAGTTCCCTTTGCTTCTTATTAAAGAAATTAAGATGATGATAACAATTTGAGAATTAAGTTCTCACAAGTGGTGTTTAAGATTAGGAATTAAGAATAATTCCCTGCAAATTTATAGTGTCCATCTATTTATGTTTTTTTATTTTATTGCAATTTGTTGAGTGTTAGGCAGCTGGATTATGCCAAAGAAGCTGTTTATAAATTTGAATTTAATGTGATTTTGCTTGCTCACATATCAAATTTAAACTGTAAGCTTATTTATTTCATTCTTCGGAAGCTGTAATTTTCTTGTGTCACTCGAGGTAGACCATCCATGTATTTCTCCATCAATGCATATATGATAGTTGTTCTTTACTTGTACAGGTGATACACAACAGTTTTTGAAATTTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACGAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATGGTATGCTTTTTCTACTATTGTGTAGTACTATCTTCTTTTTTTCTGCTACCTGTATTTCACCCCATTGCATTACCTTTCAGTACATCCAAATCATAACTGATTTCACTTTTAACTTTTCTGTGAATTGTCAAACTGTATGTCTACTGATCTAATTAAGAGTGCTTCAAATTGAACTTGTCATCATTGTTGCTATCGAGCACATAATTAGTCAATTTTTAGCAACATTTTTGATATCTGATAGGATAAGGTGTCAGTCTGCTATCATGAGAATCTCTCATTTAGGTGTCTTGAGTAGAGAGACTTAGGCTCATCTCTTTGATTTCTAGTGAAACAGAACTGCTCTGAATTTTTAGCTAAAGTTGGTCAATTTTTAGCAACATTTTGATATCTGATGGATAATTCATGACTTTGAATACAAAATTAAGATAATCAAAGGGAACAATAGCCAACAATTATGGTTAAGCAGAAAATACATAACTTTGGGAAGCCTTGTACGTGAGACTCCTCCATGGCATACCAAGAACTTAACTGGCAATAAGATAACTTTATGATTTCTCTGTTACTGTTCATCAAACATTCGTGCATGTACCGTAAAGAATTAATACTGCAACATCATTTCAGTAGCTATTATTTGTAATATGTAAGCACATTATCTTAGAGAAACAATCATCAAGGCTTTCTTCATTCTCTATTGGTAAGTACCAAATGTAATCGCTCTCCTTCATTTGCCATAGAATTTAGAGCACTCCATGTTTTGTTGTGCAGTATGCATCATTGTTTCATAGAGGAGAACAACATGCCATTGCTTCATCCACTCAAGGTACAACATCTTTGAGCTCCTCAGCATCCCTTGATAACTCACTATCTGATATGTACCGCTCTCCTCCAAGACCACTTCCTTACGATGCTGATCCAAGATACTTCCGCTTGCAACGTGATGGGCTAGTCTCAAGAAGGGAGAAAGGCTCAAGTCATTCACATGAGGAAACTGAACCACTACGAAGAAGTGATATTGATGATGATTCTGAATCTTTGGGTATGGGCAATAAATGGAAGGAGTCTGTATGTGAAGAAGGATCAAAAGAATATAATTCCAAGTCATTGAAATTCTCAACAGCTAAAACAACTACTGAGTTTACTCAAATTTGTTATTCTTCAGAAGATGAAGATGTCTGCCCGACATGTCTTGAAGGTAGGTCAAGCTTTAGGTATTTTGTGATCCATCTTGTTGCACTTCATTACAGAGTAATTTATGTACTCCATCTGCTAAAATAACCATGAGAACACTTTCATATTTCACTTTCTTCCCTCTAGTATCATAGGGTAGACAATATTATTTCAGCATGCAATAGGAAATACACTAATAACTCCTGTAATTTATTTCCCTTGTAAAATAATTTGGTTTCCGTTTTATATTTTCGTTCAGTGTTTACGAAAATTCAGGAATATCTTGACTATTAATTTCCTCATCTTGATGATACTCTCTTTTCCAGAATATACTGAAGAAAACCCAAAAATAATGACAAAATGCTCTCACCACTTCCACTTGGGTTGCATATATGAGTGGATGGAGAGAAGTGACAACTGTCCAGTATGCGGCAAGGTAACTGCGATGTTCTTTATACTATATGCATACTCAATAAATATTCTTTATAACTCTGTGATGAGGTTGAGTTTTCCCTTTGTATGCTACTCCCTCTGCCCCAGTTTATGCGACACCATTTCATGTTTAGTTTGTCCCAACAAGCATGTCACCTTTATATAATTAGAATTAACAACTTTAAAATTCTCATTTTTCTTTCAATGAAATGATTTATAAGCCCACAAATGTCTAAGGTTTGTTTTAGACAACAAATTTCAAAAAGTCTTCTTTCTTTCCTTAAACTTTGTGCTAAGTCAAACAGTGCTACATAAATTGGGATGGAGGGAGTATTGTACTAGAAACGATACCCAGACATTCTGAGGCAAACAATTCACATCTTTATTTTTCTATAGTAGTATGAACTGATGTGGTTAACGATCTACTTGTGCCTTCACAAGCTGCTAAAAACCTCTCAATAGTTGCACTAATTAATTTGACAAAATTACACTTGTGTGTATGATAACAGTTTAAATTGCTCTGCTGTTGATAATTGAAAGAAAGTAGCGAAACTAGTGGGCTTCATTTTCCTTATAGTTATAACTTATAAGTAATAAGTGAGACATGAATAACTCGTGGAGGGGGCGCATATACTCCAGAACGAGCACGAGAAAGAAGCACAAGATCATCAAAGCAATAGATGGGAAGAGATAACACCATTGAGGAGATGGCTGGAAGGAGGCATAGTGCCATCAAGAGTAGCAGGAAACGAATGCGATGTCGTCAGAATGGTCACGGATAAGAGGCGTAACTCCACTAGAATGGTCTCTTAAAAGAGTCCTGATGCTATCAGAGTGGTTGTTGGGAAGAGGCCTGGTGACGCCAGATGGTCGCTAGAAAGTAGAAATGACGTTGGCAGCTAGGCAGTGTAAGGTTGCCTACACTCGATGAAAAACCTTTACAAATGGAATTATTCTACTTGAGTTTCTACCCAGATTATAGGGCCTTGGTTACCACGTGGGAGAATAAACTAAGAGAAGGTTATATCAAGGACTTAAGGATATGTTGAATTTGAGGCACACAACATAATAAATACTCATACTATATGATAGTATGGTGCAAAGTTTAAATTATTAGTTTTAGGAGAGATGGTTAGATTCTTTTTCATAGGGTTAACATTTGGTAAGTTTGTTCTTTAAAGTTCAATCATCTATCCACTGTGTACCGAGGTGCAGGAGGGTGTTAGATATAAAGAAGTCCTATGTATAAGAGGCCGTCTATTATCCACGAAGTATCAAACCATGCACCACTCAGGACGCTTACAAAGAAAAGTTGTCCCTAGATGGTATCAAAGAGATATCTGAAAGTGCCGATAATGGTTTATGGATTATTCCACCCACTGTCTAGGTTGTGGGTAAGAGGTTCCAGCTTGTCTTATGGTATGCTAGTTAAATGGCTGTAATGAAGAAGAGTGAACATTGGCCTGATTGGACTATCCATTCAGGTCTATTCTTGACTAGAAAAATTAGTCCATGCTTGGTTTGTGCCGAAATATTTACCCTGATAGAGAGTCCAACTAGTGGGGGACATGCTATGGCCTACCTAGACTATTTATTAGCAGATTCTTTCCAAATAAAACTCTTTACTGATGCCTGTGGTTCAGACAAGGGATTTGGCTGGGCCTGAGCAAATCTGTAATTTTTGTAGGGTACTTTGTCTCACAAGCCTGTTCTCTGCTCATCCATAAATCTCTGTTCAGATTACACTGCATTTGACCGTGTTCTTGGGGAGCTTTTATGATGGGCTTGAATAACGATGGGTTGGAAGTTTTAAACTGTATTACTGTTACTAAAGATGTTCAAATACGGCTCTGGCAGTATTTAAAACAAAGGTTGCTGAACATTGTTTATTCCGTTCCCTAGCATATATTGGTCTTCAGCCTGATGGATAACTAACAATGAGGACAAAGAAGGAGAAGAAAGCTGTTGTCGGTACTTGTAAGGAGAGCGCTTGCAACTCTTCCATAGAAAGAGAAAATAGTTCAGAAAACACAAAAGGGGTGGCTGAGAAACAAAATCTATTCAAGAATCTGTATAATCGGGTGGATATGACATTTTCCCTCCGATTTCTGTTTATTGGTTGCTTCAACTCAGAAAACATCTAATAAATTAATTGGGGGATGATTATGGTGAGGAGCAGAATATATGAGAGCATGAAAAGTTGTTCAGTCTCTCTAAGAACCCTCACTTCTTTATCAGTGTAGATTTAGACCGTTTCAAAGTGCTGTTGAGTAATTTCTTTTACATTCATACATATGTAGTACATTATAGTATATGATGCATAGTATTTTCTTTTCTTATTTAATGACCTCTTTGCTTTGTAGGTGATGCTATTCAACGAGTCGCCATGATCTTTGCTCTTAAAAAGCTTTAGTCGTGGATGAAACCAGAAGGAGATAAGGGCAACAACTAGTAAACCAGAAAAGCTAATCAACGTAAAGTCATTGTGAATATCTGTGCAGCTAAATGTGTGACCATACATCAGTAAAAATGAAATTACTGTTCTCTCTGTTTGGAACTTTCGAGTTCATATTGATCATTTGATGCAACAGAAAACAGTTTCAAAGTACATCATGTAATCTTGTTTTGATTTGATGAGTGATTTCTCCCAGTGTATAGCACATTGTTCCTACTTTCACAAGTTGAATGTTGGCACATTTGTCTGCCAAAATCACTGGATCTGATACTATTTTATATCTGTTCC</genome_strand>
        <mrna_strand>CAGTCATTGTGTAGATAGAAAAAATAAAAAAGAAACCCTTTGACCTCTGAAATTATCTATTTTTATCTTTCTCTCTATTATCCCCGCAATCTCCGCTATTTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATACACAACAGTTTTTGAAATTTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACGAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCATCATTGTTTCATAGAGGAGAACAACATGCCATTGCTTCATCCACTCAAGGTACAACATCTTTGAGCTCCTCAGCATCCCTTGATAACTCACTATCTGATATGTACCGCTCTCCTCCAAGACCACTTCCTTACGATGCTGATCCAAGATACTTCCGCTTGCAACGTGATGGGCTAGTCTCAAGAAGGGAGAAAGGCTCAAGTCATTCACATGAGGAAACTGAACCACTACGAAGAAGTGATATTGATGATGATTCTGAATCTTTGGGTATGGGCAATAAATGGAAGGAGTCTGTATGTGAAGAAGGATCAAAAGAATATAATTCCAAGTCATTGAAATTCTCAACAGCTAAAACAACTACTGAGTTTACTCAAATTTGTTATTCTTCAGAAGATGAAGATGTCTGCCCGACATGTCTTGAAG.............................................................................................................................................................................................................................................................................................................AATATACTGAAGAAAACCCAAAAATAATGACAAAATGCTCTCACCACTTCCACTTGGGTTGCATATATGAGTGGATGGAGAGAAGTGACAACTGTCCAGTATGCGGCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGCTATTCAACGAGTCGCCATGATCTTTGCTCTTAAAAAGCTTTAGTCGTGGATGAAACCAGAAGGAGATAAGGGCAACAACTAGTAAACCAGAAAAGCTAATCAACGTAAAGTCATTGTGAATATCTGTGCAGCTAAATGTGTGACCATACATCAGTAAAAATGAAATTACTGTTCTCTCTGTTTGGAACTTTCGAGTTCATATTGATCATTTGATGCAACAGAAAACAGTTTCAAAGTACATCATGTAATCTTGTTTTGATTTGATGAGTGATTTCTCCCAGTGTATAGCACATTGTTCCTACTTTCACAAGTTGAATGTTGGCACATTTGTCTGCCAAAATCACTGGATCTGATACTATTTTATATCTGTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U576742" ref_strand="+" ref_description="SGN-U576742 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157341307|emb|CAO49214.1| (e_value=3e-35) unnamed; (*ATH) AT5G15790.2 (e_value=2e-28) | Symbol: None | zinc finger (C3HC4-type RING finger) family protein, contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) | chr5:5148765-5151412 FORWARD | Aliases: None; (*SWP) sp|Q8LE94|RING3_ARATH (e_value=2e-27) E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana GN=At3g02290/At3g02291; ">
      <seq>atcactgtattttacgctcacttttatctatctcctactgattggagctttaatcgattgtaaactgttatgaactgaaatgggtttcatcggaatcggttgatgcagagattttcacggtaaagttctgttttttagggatcgataatgcaatttcttgatttgaattgtagaaatcttgattttcttgattcttgatcactgttggtgttgttttgttgatcattttttgttttaattttttcttgttttcggtttagctgtgtctttaacactgttgtatgagagttccctttgcttcttattaaagaaattaagatgatgataacaatttgagaattaagttctcacaagtggtgtttaagattaggaattaagaataattccctgcaaatttatagtgtccatctatttatgtttttttattttattgcaatttgttgagtgttaggcagctggattatgccaaagaagctgtttataaatttgaatttaatgtgattttgcttgctcacatatcaaatttaaactgtaagcttatttatttcattcttcggaagctgtaattttcttgtgtcactcgaggtagaccatccatgtatttctccatcaatgcatatatgatacgcaatctccacatgtacaggtgatacacaacagtttttgaaattttttctgaaggtcttggtcatgaagggcatcaactcattcagggtttcctgaagagagagggtgcccaattgcattttccgtaagttatattcttacaagttttgcatccataaccatctaatcacaagaatggaggattgacaatgatagccgtggaaggtttttgagttacgaacatttatttgaagacatcatcatgggtgcagtttgttgctgcttgcgagatgaatgtgaagattttgccaatccaaacagctcaatatataggaactgcttatgccttcgatgttttgttcaaaacttcttgcatatgtatgcatcattgtttcatagaggagaacaacatgccattgcttcatccactcaagaccacttccttacgatgctgatccaagatacttccgcttgcaacgtgatgggctagtctcaagaagggagaaaggctcaagtcattcacatgaggaaactgaaccactacgaagaagtgatattgatgatgattctgaatctttgggtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="+" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="40790" stop="43414"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41090" g_stop="42074" g_length="985"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="985" r_length="985" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42075" i_stop="42839" i_length="765">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42840" g_stop="42894" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="986" r_stop="1040" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42895" i_stop="42964" i_length="70">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42965" g_stop="43114" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1041" r_stop="1190" r_length="150" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="+" ref_id="SGN-U576742" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>1190</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U576742" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41090" e_stop="42074"/>
          <exon e_start="42840" e_stop="42894"/>
          <exon e_start="42965" e_stop="43114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACTGTATTTTACGCTCACTTTTATCTATCTCCTACTGATTGGAGCTTTAATCGATTGTAAACTGTTATGAACTGAAATGGGTTTCATCGGAATCGGTTGATGCAGAGATTTTCACGGTAAAGTTCTGTTTTTTAGGGATCGATAATGCAATTTCTTGATTTGAATTGTAGAAATCTTGATTTTCTTGATTCTTGATCACTGTTGGTGTTGTTTTGTTGATCATTTTTTGTTTTAATTTTTTCTTGTTTTCGGTTTAGCTGTGTCTTTAACACTGTTGTATGAGAGTTCCCTTTGCTTCTTATTAAAGAAATTAAGATGATGATAACAATTTGAGAATTAAGTTCTCACAAGTGGTGTTTAAGATTAGGAATTAAGAATAATTCCCTGCAAATTTATAGTGTCCATCTATTTATGTTTTTTTATTTTATTGCAATTTGTTGAGTGTTAGGCAGCTGGATTATGCCAAAGAAGCTGTTTATAAATTTGAATTTAATGTGATTTTGCTTGCTCACATATCAAATTTAAACTGTAAGCTTATTTATTTCATTCTTCGGAAGCTGTAATTTTCTTGTGTCACTCGAGGTAGACCATCCATGTATTTCTCCATCAATGCATATATGATAGTTGTTCTTTACTTGTACAGGTGATACACAACAGTTTTTGAAATTTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACGAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATGGTATGCTTTTTCTACTATTGTGTAGTACTATCTTCTTTTTTTCTGCTACCTGTATTTCACCCCATTGCATTACCTTTCAGTACATCCAAATCATAACTGATTTCACTTTTAACTTTTCTGTGAATTGTCAAACTGTATGTCTACTGATCTAATTAAGAGTGCTTCAAATTGAACTTGTCATCATTGTTGCTATCGAGCACATAATTAGTCAATTTTTAGCAACATTTTTGATATCTGATAGGATAAGGTGTCAGTCTGCTATCATGAGAATCTCTCATTTAGGTGTCTTGAGTAGAGAGACTTAGGCTCATCTCTTTGATTTCTAGTGAAACAGAACTGCTCTGAATTTTTAGCTAAAGTTGGTCAATTTTTAGCAACATTTTGATATCTGATGGATAATTCATGACTTTGAATACAAAATTAAGATAATCAAAGGGAACAATAGCCAACAATTATGGTTAAGCAGAAAATACATAACTTTGGGAAGCCTTGTACGTGAGACTCCTCCATGGCATACCAAGAACTTAACTGGCAATAAGATAACTTTATGATTTCTCTGTTACTGTTCATCAAACATTCGTGCATGTACCGTAAAGAATTAATACTGCAACATCATTTCAGTAGCTATTATTTGTAATATGTAAGCACATTATCTTAGAGAAACAATCATCAAGGCTTTCTTCATTCTCTATTGGTAAGTACCAAATGTAATCGCTCTCCTTCATTTGCCATAGAATTTAGAGCACTCCATGTTTTGTTGTGCAGTATGCATCATTGTTTCATAGAGGAGAACAACATGCCATTGCTTCATCCACTCAAGGTACAACATCTTTGAGCTCCTCAGCATCCCTTGATAACTCACTATCTGATATGTACCGCTCTCCTCCAAGACCACTTCCTTACGATGCTGATCCAAGATACTTCCGCTTGCAACGTGATGGGCTAGTCTCAAGAAGGGAGAAAGGCTCAAGTCATTCACATGAGGAAACTGAACCACTACGAAGAAGTGATATTGATGATGATTCTGAATCTTTGGGTAT</genome_strand>
        <mrna_strand>ATCACTGTATTTTACGCTCACTTTTATCTATCTCCTACTGATTGGAGCTTTAATCGATTGTAAACTGTTATGAACTGAAATGGGTTTCATCGGAATCGGTTGATGCAGAGATTTTCACGGTAAAGTTCTGTTTTTTAGGGATCGATAATGCAATTTCTTGATTTGAATTGTAGAAATCTTGATTTTCTTGATTCTTGATCACTGTTGGTGTTGTTTTGTTGATCATTTTTTGTTTTAATTTTTTCTTGTTTTCGGTTTAGCTGTGTCTTTAACACTGTTGTATGAGAGTTCCCTTTGCTTCTTATTAAAGAAATTAAGATGATGATAACAATTTGAGAATTAAGTTCTCACAAGTGGTGTTTAAGATTAGGAATTAAGAATAATTCCCTGCAAATTTATAGTGTCCATCTATTTATGTTTTTTTATTTTATTGCAATTTGTTGAGTGTTAGGCAGCTGGATTATGCCAAAGAAGCTGTTTATAAATTTGAATTTAATGTGATTTTGCTTGCTCACATATCAAATTTAAACTGTAAGCTTATTTATTTCATTCTTCGGAAGCTGTAATTTTCTTGTGTCACTCGAGGTAGACCATCCATGTATTTCTCCATCAATGCATATATGATACGCAATCTCCACATGTACAGGTGATACACAACAGTTTTTGAAATTTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACGAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCATCATTGTTTCATAGAGGAGAACAACATGCCATTGCTTCATCCACTCAAG......................................................................ACCACTTCCTTACGATGCTGATCCAAGATACTTCCGCTTGCAACGTGATGGGCTAGTCTCAAGAAGGGAGAAAGGCTCAAGTCATTCACATGAGGAAACTGAACCACTACGAAGAAGTGATATTGATGATGATTCTGAATCTTTGGGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U564793" ref_strand="+" ref_description="SGN-U564793 Tomato 200607#2 [30 ESTs aligned] (*GB) gi|157341306|emb|CAO49213.1| (e_value=3e-87) unnamed; (*ATH) AT5G38900.1 (e_value=3e-76) | Symbol: None | DSBA oxidoreductase family protein, contains Pfam profile: PF01323 DSBA-like thioredoxin domain | chr5:15590735-15592848 REVERSE | Aliases: K15E6.80, K15E6_80; ">
      <seq>acatggtgtatattttaagttgtcctaagtccattttcacatcacaccaaactcctaaatttttacccttttttcctaaaaaaaatttgttcctattcaagatttgatttcagaagaagcaaattctggttaaggccccaaaagagtctttcctaatttatatgcttccattgaatctccgaaaattcctaatttcttcgaggttcctgcatcgattaatggccaccaactgtggaaagaagtttatccgaattgatatcagttcggatactgtgtgcccctggtgctttgtggggaaaaagaaccttcataaagctatagcgttaaccagtgatcagtatgattttgagattaagtggcatccgtttcttctcaacccttctgcacctaaagaagggattaacaagaaagattactacagaaataagtttggatctcgctctgaacaaatgatgtcaagaatgtcggaggtttttaagggccttgggatggaatacaacatgtcaggacttacgggaagtagtctggacagccacaggctactatatttcgcaggacaacaggggcttgacaagcaaaataatcttgctgaggagctttttctcggctatttcacacagggaaggtatataggtgacagagaatttcttattgaagctgcaagaaaagttggtgtggaaggagcagctgacttccttgaagatcccaacaatgggctaaaggaggtgaatgaagagcttcagcaacactcatcaaatatatcaggcgtcccacattttgtgctaaatggcaagtaccagttgagcggtggccaacctccagagagtttcatacgagcttttcaagctgcttcaaatgtcacagcatagttcatctccaacttcatctaagagtctttctacctcttgtgaagttgtatgcccactggatagataccggtgactcttcttaaagtgaaatattcgatcagtattatatatatgtgctcgtggcgacttaattgtactgcagtaattacttctgttttaatttccattgaaggttgagagatttatgtgacataattgaaatgatatttgcatcgtatagttgtttttcatagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="49665" stop="46241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49365" g_stop="49164" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49163" i_stop="48496" i_length="668">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48495" g_stop="48348" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="350" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48347" i_stop="48266" i_length="82">
            <donor d_prob="0.361" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48265" g_stop="48146" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="470" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48145" i_stop="48046" i_length="100">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48045" g_stop="48002" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="514" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48001" i_stop="47917" i_length="85">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47916" g_stop="47791" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="640" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47790" i_stop="47470" i_length="321">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47469" g_stop="47385" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="725" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="47384" i_stop="47011" i_length="374">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47010" g_stop="46954" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="726" r_stop="782" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="46953" i_stop="46862" i_length="92">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="46861" g_stop="46541" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="783" r_stop="1103" r_length="321" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-U564793" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1103</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U564793" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49365" e_stop="49164"/>
          <exon e_start="48495" e_stop="48348"/>
          <exon e_start="48265" e_stop="48146"/>
          <exon e_start="48045" e_stop="48002"/>
          <exon e_start="47916" e_stop="47791"/>
          <exon e_start="47469" e_stop="47385"/>
          <exon e_start="47010" e_stop="46954"/>
          <exon e_start="46861" e_stop="46541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATGGTGTATATTTTAAGTTGTCCTAAGTCCATTTTCACATCACACCAAACTCCTAAATTTTTACCCTTTTTTCCTAAAAAAAATTTGTTCCTATTCAAGATTTGATTTCAGAAGAAGCAAATTCTGGTTAAGGCCCCAAAAGAGTCTTTCCTAATTTATATGCTTCCATTGAATCTCCGAAAATTCCTAATTTCTTCGAGGTAACACTTTTCTTTTTAATTTGCTAATTTCTCACTGGTTTATGCGTTAAATAATGGGGTTCTGTTAAATATCAAGATTTAATTTAGTTTTCCTTTTGATGAATTTGTTCCCATTTTTTAAAGTGGAATACTCAGAAAAACTGAAGCTTTGATGATATGTTCTGTTTGACCTTTTTAAATAGTTACTTGAAATCCTGTTTTTTACAAGTCAACATTTTTTCTTGGGGATAGGAATTGGGGTTCTTGAGATTTTCATTTTTGATCAAAGATATTGTGATAGAATCGACTTAAATTTAACCTTAGGGATATAGCCAATTCTTGAATTAAGATTCCGTGGTATCAAAATGAATGTACGGTTCGAGTTGAAAACAATGGGTGCAGTCACCTATAGGCTATATATCGATTCTGATTTGGGAACTGCTAGTATTAGAATATTAGAATCTATTGACTATATACATAAATTTTAAAGAGGATTAATTGATATATGGATGTGATTTCTTATCTTGAATTTGACAATGCTGATTTTGCAACTTTTAAGGGAAAATGAAGTGAAAAATATTCTTAACTGATGACATCTGTACTTTATTCTAGTAAATGATTTATTTTGTATAACAGGAAAACAGAATGAGGCTAGTTAAGATGACTTGTTTGTGAATGTGTATAATCAGGTTCCTGCATCGATTAATGGCCACCAACTGTGGAAAGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTCATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTTTGAGGTGCCATTTGCTTCTGTTATCTGTGGTTCCTTTACTGCCTCTTCCTCTATCTTCACTGGAAAAATCTTTTTTCCTTTTGTAGATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATGTCGGAGGTTCATATTTTCTTCTTTTCTCTGGTAGCCCAAACAATGTGTCTTGAGAAGTTGCCTCCAGTGTGTATCACCTAATTTCAACCTTTTCAAAATCATGCAGGTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTACGTAAGTCTCTGGCGGTTTGCGAAACACAAGAAAAGCTGTGAAGTGCAAAAGACTTGTGCTATAACAGTTTGTTTTCGGTATGCAGGGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAGGTTAGTGCCTATTCTCCTGACATAGTGAAATTAGTTGCATTAGCATACTAATGCTACACAGTAACAATATTCAATTTTCTTCTCATTTTCCTTTCTATTGGATCTTTCTCCTGAGTTTTGATAATGATTTAAAGTTTTAGTCCTTGTATAAATATTGATCATTACAGTGATGCATCACTGGTCAATAGCCATTTTCCTTCTTTTTTTCCCAGTGTTTTATGACCATAAGCAGATGTTATGCATAATAAATATGGCGACATAGTTAGTATAGAAGATGTCATATATAGTTTAAAGTGACAGCATTTGACTCTCAACGTGTAGAGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAGGTATATTTCCACAGCTTCTATCCAATAGCCAACTGGAGAGTCTGTCTTCTATTTTTCTTGCTCGTTTCCTTTCTCGCAGAACATTCACTGAGGGGTGTGTGGGTGTGGGTGTAAGTAGTACTGCTGGAGAACTGCTAAAGACAGTAGTAAAGCAGCCCATCTCAATTATATCTGTACTTGGCATTATGACTAGTATTTTGTCCTGCTCCTTGATGGACCTAGTCATTCATATCACATGTTACCTAATTTTCAGTACCTCATGCTCACTACTACTACTACTTCCCCAATCCCCCCTGCAGGTTGGCTCGTCAGTAGGATAGATCACAATTTTATAAATATTTAAAGTAAATTTTGTTGGTTTTGGGTATGTGAAGGTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTGGTATGTAAACGCATTTTAGCACATTGTTCCCATAAGCACTTTCGATATGTTAATCCATGAATGAGAAAGTACTAAGAAGTTATATTTGGCAGCTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGTCACAGCATAGTTCATCTCCAACTTCATCTAAGAGTCTTTCTACCTCTTGTGAAGTTGTATGCCCACTGGATAGATACCGGTGACTCTTCTTAAAGTGAAATATTCGATCAGTATTATATATATGTGCTCGTGGCGACTTAATTGTACTGCAGTAATTACTTCTGTTTTAATTTCCATTGAAGGTTGAGAGATTTATGTGACATAATTGAAATGATATTTGCATCGTATAGTTGTTTTTCATAGT</genome_strand>
        <mrna_strand>ACATGGTGTATATTTTAAGTTGTCCTAAGTCCATTTTCACATCACACCAAACTCCTAAATTTTTACCCTTTTTTCCTAAAAAAAATTTGTTCCTATTCAAGATTTGATTTCAGAAGAAGCAAATTCTGGTTAAGGCCCCAAAAGAGTCTTTCCTAATTTATATGCTTCCATTGAATCTCCGAAAATTCCTAATTTCTTCGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTGCATCGATTAATGGCCACCAACTGTGGAAAGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTCATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTTTGAG..................................................................................ATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATGTCGGAG....................................................................................................GTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTAC.....................................................................................GGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAG.................................................................................................................................................................................................................................................................................................................................AGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAG......................................................................................................................................................................................................................................................................................................................................................................................GTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTG............................................................................................CTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGTCACAGCATAGTTCATCTCCAACTTCATCTAAGAGTCTTTCTACCTCTTGTGAAGTTGTATGCCCACTGGATAGATACCGGTGACTCTTCTTAAAGTGAAATATTCGATCAGTATTATATATATGTGCTCGTGGCGACTTAATTGTACTGCAGTAATTACTTCTGTTTTAATTTCCATTGAAGGTTGAGAGATTTATGTGACATAATTGAAATGATATTTGCATCGTATAGTTGTTTTTCATAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U596988" ref_strand="+" ref_description="SGN-U596988 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>ggagaatttcttattgaagctgcaagaaaagttggtgtggaaggagcagctgacttccttgaagatcccaacaatgggctaaaggaggtatatttccacagcttctatccaatagccaactggagagtctgtcttctatttttcttgctcgtttcctttctcgcagaacattcactgaggggtgtgtgggtgtgggtgtaagtagtactgctggagaactgctaaagacagtagtaaagcagcccatctcaattatatctgtacttggcattatgactagtattttgtcctgctccttgatggacctagtcattcatatcacatgttacctaattttcagtacctcatgctcactactactactacttccccaatcccccctgcaggttggctcgtcagtaggatagatcacaattttataaatatttaaagtaaattttgttggttttgggtatgtgaaggtgaatgaagagcttcagcaacactcatcaaatatatcaggcgtcccacattttgtgctaaatggcaagtaccagttgagcggtggccaacctccagagagtttcatacgagcttttcaagctgcttcaaatgtcacagcatagttcatctccaacttcatctaagagtctttctacctcttgtgaagttgtatgcccactggatagataccggtgactcttcttaaagtgaaatattcgatcagtattatatatatgtgctcgtggcgacttaattgtactgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="47770" stop="46335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47471" g_stop="46954" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46953" i_stop="46862" i_length="92">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46861" g_stop="46635" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="745" r_length="227" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-U596988" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U596988" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47471" e_stop="46954"/>
          <exon e_start="46861" e_stop="46635"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAGGTATATTTCCACAGCTTCTATCCAATAGCCAACTGGAGAGTCTGTCTTCTATTTTTCTTGCTCGTTTCCTTTCTCGCAGAACATTCACTGAGGGGTGTGTGGGTGTGGGTGTAAGTAGTACTGCTGGAGAACTGCTAAAGACAGTAGTAAAGCAGCCCATCTCAATTATATCTGTACTTGGCATTATGACTAGTATTTTGTCCTGCTCCTTGATGGACCTAGTCATTCATATCACATGTTACCTAATTTTCAGTACCTCATGCTCACTACTACTACTACTTCCCCAATCCCCCCTGCAGGTTGGCTCGTCAGTAGGATAGATCACAATTTTATAAATATTTAAAGTAAATTTTGTTGGTTTTGGGTATGTGAAGGTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTGGTATGTAAACGCATTTTAGCACATTGTTCCCATAAGCACTTTCGATATGTTAATCCATGAATGAGAAAGTACTAAGAAGTTATATTTGGCAGCTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGTCACAGCATAGTTCATCTCCAACTTCATCTAAGAGTCTTTCTACCTCTTGTGAAGTTGTATGCCCACTGGATAGATACCGGTGACTCTTCTTAAAGTGAAATATTCGATCAGTATTATATATATGTGCTCGTGGCGACTTAATTGTACTGC</genome_strand>
        <mrna_strand>GGAGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAGGTATATTTCCACAGCTTCTATCCAATAGCCAACTGGAGAGTCTGTCTTCTATTTTTCTTGCTCGTTTCCTTTCTCGCAGAACATTCACTGAGGGGTGTGTGGGTGTGGGTGTAAGTAGTACTGCTGGAGAACTGCTAAAGACAGTAGTAAAGCAGCCCATCTCAATTATATCTGTACTTGGCATTATGACTAGTATTTTGTCCTGCTCCTTGATGGACCTAGTCATTCATATCACATGTTACCTAATTTTCAGTACCTCATGCTCACTACTACTACTACTTCCCCAATCCCCCCTGCAGGTTGGCTCGTCAGTAGGATAGATCACAATTTTATAAATATTTAAAGTAAATTTTGTTGGTTTTGGGTATGTGAAGGTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTG............................................................................................CTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGTCACAGCATAGTTCATCTCCAACTTCATCTAAGAGTCTTTCTACCTCTTGTGAAGTTGTATGCCCACTGGATAGATACCGGTGACTCTTCTTAAAGTGAAATATTCGATCAGTATTATATATATGTGCTCGTGGCGACTTAATTGTACTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U565340" ref_strand="+" ref_description="SGN-U565340 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157341305|emb|CAO49212.1| (e_value=4e-64) unnamed; (*ATH) AT3G02300.1 (e_value=3e-64)  Symbol: None | regulator of chromosome condensation (RCC1) family protein, weak similarity to UVB-resistance protein UVR8 (Arabidopsis thaliana) GI:5478530; contains Pfam profile PF00415: Regulator of chromosome condensation (RCC1) | chr3:461173-464... ; (*SWP) sp|Q9VR91|HERC2_DROME (e_value=2e-12) Probable E3 ubiquitin-protein ligase HERC2 OS=Drosophila melanogaster GN=HERC2; ">
      <seq>tnacggccggggganaantattagtaacaaaatttggacattagagtattttaaggtctcaaagaatcagttgaggtaaaacggtcggccaggaattggcagtcctgtcctccctccatccaatttctttggagctcaaactgcaaccttagattcttcaaattttccggataaaattacttccattgtttctcgatttcatcgtaagtttttcactgcttacatttattttttagagtcaaagttagggacttgggttcaaaaacagtagttaaagatcatagtttttttttgtaatttatggttcatttttgttgatagtgagaaataaaatggatattgatgaaatacttggggtatctcggcctgtgagtttgacaaacaagagtgctatttatgtttggggttacaatcaatctgggcaaacgggtcggagagggaaaganaggagtttgaggatcccaaaacagcttcctccagagctatttggatgcccagctggtgggaattcccgttggttggatattgcttgtggtcgtgagcatactgctgctgtggcttctgatggatcgctttttacatggggagctaacgaatttggtcagctgggtgacggaactgaaaatgctaggaagcaccccaagaaagtgaaacaattgcaatctgaatttgttattagtgtttcatgtggagcacattgtactgttgccattgcanaaccacgtgaaaacgatggtagcatgtcagctcggagactttggggtttggggacagaaccagggatcnaattacccacgactcnttnnggggngncttttnnnnctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="+" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="50623" stop="52714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50926" g_stop="51495" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="585" r_length="570" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51496" i_stop="52219" i_length="724">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.792" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52220" g_stop="52413" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="780" r_length="195" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52414" i_stop="52498" i_length="85">
            <donor d_prob="0.923" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52499" g_stop="52526" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="781" r_stop="808" r_length="28" r_score="0.857"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="+" ref_id="SGN-U565340" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>792</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U565340" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50926" e_stop="51495"/>
          <exon e_start="52220" e_stop="52413"/>
          <exon e_start="52499" e_stop="52526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTATTAGTAACAAAATTTGGACATTAGAGTATTTTAAGGTCTCAAAGAATCAGTTGAGGTAAAACGGTCGGCCAGGAATTGGCAGTCCTGTCCTCCCTCCATCCAATTTCTTTGGAGCTCAAACTGCAACCTTAGATTCTTCAAATTTTCCGGATAAAATTACTTCCATTGTTTCTCGATTTCATCGTAAGTTTTTCACTGCTTACATTTATTTTTTAGAGTCAAAGTTAGGGACTTGGGTTCAAAAACAGTAGTTAAAGATCATAGTTTTTTTTTGTAATTTATGGTTCATTTTTGTTGATAGTGAGAAATAAAATGGATATTGATGAAATACTTGGGGTATCTCGGCCTGTGAGTTTGACAAACAAGAGTGCTATTTATGTTTGGGGTTACAATCAATCTGGGCAAACGGGTCGGAGAGGGAAAGAGAGGAGTTTGAGGATCCCAAAACAGCTTCCTCCAGAGCTATTTGGATGCCCAGCTGGTGGGAATTCCCGTTGGTTGGATATTGCTTGTGGTCGTGAGCATACTGCTGCTGTGGCTTCTGATGGATCGCTTTTTACATGGGGTTTGCCCTTTATTTACCTTCACTTTTCAGTATCCATGTTTTACCTCTATTTCTGATTTCAATTGACTCTCGTTTACTTCATGCTTGCCCAAAGATTTGATCTTTTTTCATCAGCTGTCTCTGTATTTCTGATATAAATTGGGTGGAATGAAGAAAGAAAACCATGTTCTTTAGTTTGATCATGCTATCTGATGAAATTGGGTTGAGAAAGAGTTTCTGAAGATTGGGTGTAACCCAAGAATGTGCCAGTTATAGTATTTATCTTCCAAATGAATGATGAATTCTCATGTAAACTGTGGCATCTTTTAATTTTTCCCTAACATGGTTTGATCTCGGTTGGGGTTATCTATTTGCCTCTAAAACCCATTGCCTTATTCTTACTGATAAAAAGGTCATTGCTCTATTTTGTTGGTTATTTATTGCCTTTCTTAATTGATCTTGTTACATTTTGTGTATTTTTGCTCAAATAAATTCCTTGGTGTAATACTTGTTTTTTATTCCTTTACTCAAAGAGATATGTTGCAAAGAAGACATCGCCACTTTATGCATTTTAAGTTGATATAGAACAATTAATTTTACTTGTAAAGTTTACCTCTTTGGGAAAAATCTAGATTTTAATTGATATTTGACAATTAATTTCAGAAGTCTGTTCCTGCTTTTGTTTGTGGGGAAGTTGATTTTCCTTGTAAGAGAGAGCACTCCTAATCTTTATACCTTCAAACAGGAGCTAACGAATTTGGTCAGCTGGGTGACGGAACTGAAAATGCTAGGAAGCACCCCAAGAAAGTGAAACAATTGCAATCTGAATTTGTTATTAGTGTTTCATGTGGAGCACATTGTACTGTTGCCATTGCAGAACCACGTGAAAACGATGGTAGCATGTCAGCTCGGAGACTTT-GGGTTTGGGGACAGAACCAGGTCAGTCTCACAAAAAAAAAAACCTTCAAGCAGCTACCTTGTTTATTTGAGATCACAATTTGTTTGCCTGTGTTATTCTATGCAGGGATCCAATTACCCACGACTCTTTTGGG</genome_strand>
        <mrna_strand>AANTATTAGTAACAAAATTTGGACATTAGAGTATTTTAAGGTCTCAAAGAATCAGTTGAGGTAAAACGGTCGGCCAGGAATTGGCAGTCCTGTCCTCCCTCCATCCAATTTCTTTGGAGCTCAAACTGCAACCTTAGATTCTTCAAATTTTCCGGATAAAATTACTTCCATTGTTTCTCGATTTCATCGTAAGTTTTTCACTGCTTACATTTATTTTTTAGAGTCAAAGTTAGGGACTTGGGTTCAAAAACAGTAGTTAAAGATCATAGTTTTTTTTTGTAATTTATGGTTCATTTTTGTTGATAGTGAGAAATAAAATGGATATTGATGAAATACTTGGGGTATCTCGGCCTGTGAGTTTGACAAACAAGAGTGCTATTTATGTTTGGGGTTACAATCAATCTGGGCAAACGGGTCGGAGAGGGAAAGANAGGAGTTTGAGGATCCCAAAACAGCTTCCTCCAGAGCTATTTGGATGCCCAGCTGGTGGGAATTCCCGTTGGTTGGATATTGCTTGTGGTCGTGAGCATACTGCTGCTGTGGCTTCTGATGGATCGCTTTTTACATGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTAACGAATTTGGTCAGCTGGGTGACGGAACTGAAAATGCTAGGAAGCACCCCAAGAAAGTGAAACAATTGCAATCTGAATTTGTTATTAGTGTTTCATGTGGAGCACATTGTACTGTTGCCATTGCANAACCACGTGAAAACGATGGTAGCATGTCAGCTCGGAGACTTTGGGGTTTGGGGACAGAACCAG.....................................................................................GGATCNAATTACCCACGACTCNTTNNGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U565339" ref_strand="+" ref_description="SGN-U565339 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157341305|emb|CAO49212.1| (e_value=1e-91) unnamed; (*ATH) AT3G02300.1 (e_value=3e-86)  Symbol: None | regulator of chromosome condensation (RCC1) family protein, weak similarity to UVB-resistance protein UVR8 (Arabidopsis thaliana) GI:5478530; contains Pfam profile PF00415: Regulator of chromosome condensation (RCC1) | chr3:461173-464... ; (*SWP) sp|Q6P798|RCBT2_RAT (e_value=5e-16) RCC1 and BTB domain-containing protein 2 OS=Rattus norvegicus GN=Rcbtb2; ">
      <seq>ggtcctgtcctccctccatccataaaactcccaatttctttggagctcaaactgcaaccttagattcttcaaattttccggataaaattccttccattatatatctttttctcgatttcatcgtaagtttttcactgcctacatttattttttagagtcaaagttagggacttgggttcaaaaacagtagttaaagatcataggttttttttttttgtaatttatggttcatttttgttgatagtgaaaaataaaatggatattgatgaaatacttggggtatctcggcctgtgagtttgacaaacaagagtgcgatttatgtttggggttacaatcaatctgggcaaacgggtcggagagggaaagagaggagtttgaggatcccaaaacagcttcctccagagctatttggatgcccagctggtgggaattcccgttggttggatattgcttgtggtcgtgagcatactgctgctgtggcttctgatggatcgctttttacatggggagctaacgaatttggtcagctgggtgacggaactgaaaatgctaagaagcaccccaagaaagtgaaacaattgcaatctgaatttgttattagtgtttcatgtggagcacattgtactgttgccattgcagaaccacgtgaaaacgatggtagcatgtcaactcggagactttgggtttggggacagaaccagggaaccaattacccacgactcttttggggtgccttttctccttctacggttattcgccaagtttcttgtggtgctgttcatgttgtagctctattcagaaagaaggggtntactacaaagcttgggggctataatgaatatggtcagcttggcagangtgtnacatcagaangcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="+" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="50712" stop="53461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51030" g_stop="51495" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="508" r_length="478" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51496" i_stop="52219" i_length="724">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.792" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52220" g_stop="52413" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="702" r_length="194" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52414" i_stop="52498" i_length="85">
            <donor d_prob="0.923" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52499" g_stop="52546" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="703" r_stop="750" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52547" i_stop="52823" i_length="277">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.932" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52824" g_stop="52896" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="751" r_stop="828" r_length="78" r_score="0.863"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52897" i_stop="53112" i_length="216">
            <donor d_prob="0.982" d_score="0.78"/>
            <acceptor a_prob="0.961" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53113" g_stop="53161" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="829" r_stop="878" r_length="50" r_score="0.898"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="+" ref_id="SGN-U565339" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>830</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U565339" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51030" e_stop="51495"/>
          <exon e_start="52220" e_stop="52413"/>
          <exon e_start="52499" e_stop="52546"/>
          <exon e_start="52824" e_stop="52896"/>
          <exon e_start="53113" e_stop="53161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATTTCTTTGGAGCTCAAACTGCAACCTTAGATTCTTCAAATTTTCCGGATAAAATTACTTCC-------AT-TGTTTCTCGATTTCATCGTAAGTTTTTCACTGCTTACATTTATTTTTTAGAGTCAAAGTTAGGGACTTGGGTTCAAAAACAGTAGTTAAAGATCATA-G---TTTTTTTTTGTAATTTATGGTTCATTTTTGTTGATAGTGAGAAATAAAATGGATATTGATGAAATACTTGGGGTATCTCGGCCTGTGAGTTTGACAAACAAGAGTGCTATTTATGTTTGGGGTTACAATCAATCTGGGCAAACGGGTCGGAGAGGGAAAGAGAGGAGTTTGAGGATCCCAAAACAGCTTCCTCCAGAGCTATTTGGATGCCCAGCTGGTGGGAATTCCCGTTGGTTGGATATTGCTTGTGGTCGTGAGCATACTGCTGCTGTGGCTTCTGATGGATCGCTTTTTACATGGGGTTTGCCCTTTATTTACCTTCACTTTTCAGTATCCATGTTTTACCTCTATTTCTGATTTCAATTGACTCTCGTTTACTTCATGCTTGCCCAAAGATTTGATCTTTTTTCATCAGCTGTCTCTGTATTTCTGATATAAATTGGGTGGAATGAAGAAAGAAAACCATGTTCTTTAGTTTGATCATGCTATCTGATGAAATTGGGTTGAGAAAGAGTTTCTGAAGATTGGGTGTAACCCAAGAATGTGCCAGTTATAGTATTTATCTTCCAAATGAATGATGAATTCTCATGTAAACTGTGGCATCTTTTAATTTTTCCCTAACATGGTTTGATCTCGGTTGGGGTTATCTATTTGCCTCTAAAACCCATTGCCTTATTCTTACTGATAAAAAGGTCATTGCTCTATTTTGTTGGTTATTTATTGCCTTTCTTAATTGATCTTGTTACATTTTGTGTATTTTTGCTCAAATAAATTCCTTGGTGTAATACTTGTTTTTTATTCCTTTACTCAAAGAGATATGTTGCAAAGAAGACATCGCCACTTTATGCATTTTAAGTTGATATAGAACAATTAATTTTACTTGTAAAGTTTACCTCTTTGGGAAAAATCTAGATTTTAATTGATATTTGACAATTAATTTCAGAAGTCTGTTCCTGCTTTTGTTTGTGGGGAAGTTGATTTTCCTTGTAAGAGAGAGCACTCCTAATCTTTATACCTTCAAACAGGAGCTAACGAATTTGGTCAGCTGGGTGACGGAACTGAAAATGCTAGGAAGCACCCCAAGAAAGTGAAACAATTGCAATCTGAATTTGTTATTAGTGTTTCATGTGGAGCACATTGTACTGTTGCCATTGCAGAACCACGTGAAAACGATGGTAGCATGTCAGCTCGGAGACTTTGGGTTTGGGGACAGAACCAGGTCAGTCTCACAAAAAAAAAAACCTTCAAGCAGCTACCTTGTTTATTTGAGATCACAATTTGTTTGCCTGTGTTATTCTATGCAGGGATCCAATTACCCACGACTCTTTTGGGGTGCCTTTTCTCCTTCTACGGTACTATTTTTTCTTGAGAATGAACTTTTGTGGAGATATCTGTGTTTTTCATGCAAATACATTACTTCTGTTCTGTGTGGTCCTAGTGGGGCTTAAGCATTTATCTAGTCGCATTTATGTTATGATAGCAGATTTACCTTTACCTGAGTTCTCTATCTAATCTATGCCCCCAATTTTTTTGTTAAGAAGTTGCTTTCCATACAAAAACAACGGTGACTTAACATTCGCAGTGCGCAACAAATTTTATGATATATGTATGCTCTTTCAATTCATTCAGGTTATTCGCCAAGTTTCTTGTGGTGCTGTTCATGTTGTAGCTCTA-TCAG-AAGAA-GGGT-TACTAC-AAGCTTGGGGTAATTTGCACTTTCTTAATTCACCTTTATATACAATTCTATGCTTAACATATCCTCTCAGTAATTTTGATGAAATCAGTGCACATATGTGTATGGATCTCTGTATGTGATTTTAATTTTTATGTGTACATCCTCTATCAGGTTACACAGCCTTAGAGTTAAAAACATATTGTGTCATGTATTAATGAAAATTTTGTCACTGCGCTGGTTAAGCAG-GCTATAATGAATATGGTCAGCTTGGCAGAGGTGTTACATCAGAAGGCCT</genome_strand>
        <mrna_strand>CCAATTTCTTTGGAGCTCAAACTGCAACCTTAGATTCTTCAAATTTTCCGGATAAAATTCCTTCCATTATATATCTTTTTCTCGATTTCATCGTAAGTTTTTCACTGCCTACATTTATTTTTTAGAGTCAAAGTTAGGGACTTGGGTTCAAAAACAGTAGTTAAAGATCATAGGTTTTTTTTTTTTGTAATTTATGGTTCATTTTTGTTGATAGTGAAAAATAAAATGGATATTGATGAAATACTTGGGGTATCTCGGCCTGTGAGTTTGACAAACAAGAGTGCGATTTATGTTTGGGGTTACAATCAATCTGGGCAAACGGGTCGGAGAGGGAAAGAGAGGAGTTTGAGGATCCCAAAACAGCTTCCTCCAGAGCTATTTGGATGCCCAGCTGGTGGGAATTCCCGTTGGTTGGATATTGCTTGTGGTCGTGAGCATACTGCTGCTGTGGCTTCTGATGGATCGCTTTTTACATGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTAACGAATTTGGTCAGCTGGGTGACGGAACTGAAAATGCTAAGAAGCACCCCAAGAAAGTGAAACAATTGCAATCTGAATTTGTTATTAGTGTTTCATGTGGAGCACATTGTACTGTTGCCATTGCAGAACCACGTGAAAACGATGGTAGCATGTCAACTCGGAGACTTTGGGTTTGGGGACAGAACCAG.....................................................................................GGAACCAATTACCCACGACTCTTTTGGGGTGCCTTTTCTCCTTCTACG.....................................................................................................................................................................................................................................................................................GTTATTCGCCAAGTTTCTTGTGGTGCTGTTCATGTTGTAGCTCTATTCAGAAAGAAGGGGTNTACTACAAAGCTTGGG........................................................................................................................................................................................................................GGCTATAATGAATATGGTCAGCTTGGCAGANGTGTNACATCAGAANGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U565338" ref_strand="+" ref_description="SGN-U565338 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|147791382|emb|CAN65617.1| (e_value=1e-142) hypothetical; (*ATH) AT3G02300.1 (e_value=7e-137)  Symbol: None | regulator of chromosome condensation (RCC1) family protein, weak similarity to UVB-resistance protein UVR8 (Arabidopsis thaliana) GI:5478530; contains Pfam profile PF00415: Regulator of chromosome condensation (RCC1) | chr3:461173-464... ; (*SWP) sp|Q15034|HERC3_HUMAN (e_value=5e-29) Probable E3 ubiquitin-protein ligase HERC3 OS=Homo sapiens GN=HERC3; ">
      <seq>gatttctttggagctcaaactgcaaccttagattcttcaaattttccggataaaattacttccattgtttctcgatttcatctgagaaataaaatggatattgatgaaatacttggggtatctcggcctgtgagtttgacaaacaagagtgctatttatgtttggggttacaatcaatctgggcaaacgggtcggagagggaaagagaggagtttgaggatcccaaaacagcttcctccagagctatttggatgcccagctggtgggaattcccgttggttggatattgcttgtggtcgtgagcatactgctgctgtggcttctgatggatcgctttttacatggggagctaacgaatttggtcagctgggtgacggaactgaaaatgctaggaagcaccccaagaaagtgaaacaattgcaatctgaatttgttattagtgtttcatgtggagcacattgtactgttgccattgcagaaccacgtgaaaacgatggtagcatgtcagctcggagactttgggtttggggacagaaccagggatccaattacccacgactcttttggggtgccttttctccttctacggttattcgccaagtttcttgtggtgctgttcatgttgtagctctatcagaagaagggttactacaagcttggggctataatgaatatggtcagcttggcagaggtgttacatcagaaggccttcaaggcccttgtgtaattaatggatatgctagatttcttgatgaagcccctgaacttgtgaagattacccaagtgtcatgcggggagtaccatactgcagctatatcagagaaaggcgaggtctatacgtggggattggggagcgtgggacaacttggccattgttcacttcagtcaggtgacaaggaacttttacctaggcgtgtagtttcccttgatggcatatgtattaaagaagttgccttgtggtggtgttcacacctgtgctgtgactgcgaaaggggctctttatgcttggggtggaggtcaggctgggcaattgggagttgggccattaaatggattcttttcatgcaagctcaatgaatctgagatgatgctccgaaatataccagtgttgggttgtccagatggtgtgcaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="+" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="50733" stop="55400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51032" g_stop="51113" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51114" i_stop="51231" i_length="118">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51232" g_stop="51495" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="346" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51496" i_stop="52219" i_length="724">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.792" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52220" g_stop="52413" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="540" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52414" i_stop="52498" i_length="85">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52499" g_stop="52546" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="588" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52547" i_stop="52823" i_length="277">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52824" g_stop="52896" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="661" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52897" i_stop="53112" i_length="216">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="53113" g_stop="53284" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="662" r_stop="833" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="53285" i_stop="54800" i_length="1516">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="54801" g_stop="55100" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="834" r_stop="1134" r_length="301" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="+" ref_id="SGN-U565338" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>1133</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U565338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51032" e_stop="51113"/>
          <exon e_start="51232" e_stop="51495"/>
          <exon e_start="52220" e_stop="52413"/>
          <exon e_start="52499" e_stop="52546"/>
          <exon e_start="52824" e_stop="52896"/>
          <exon e_start="53113" e_stop="53284"/>
          <exon e_start="54801" e_stop="55100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTCTTTGGAGCTCAAACTGCAACCTTAGATTCTTCAAATTTTCCGGATAAAATTACTTCCATTGTTTCTCGATTTCATCGTAAGTTTTTCACTGCTTACATTTATTTTTTAGAGTCAAAGTTAGGGACTTGGGTTCAAAAACAGTAGTTAAAGATCATAGTTTTTTTTTGTAATTTATGGTTCATTTTTGTTGATAGTGAGAAATAAAATGGATATTGATGAAATACTTGGGGTATCTCGGCCTGTGAGTTTGACAAACAAGAGTGCTATTTATGTTTGGGGTTACAATCAATCTGGGCAAACGGGTCGGAGAGGGAAAGAGAGGAGTTTGAGGATCCCAAAACAGCTTCCTCCAGAGCTATTTGGATGCCCAGCTGGTGGGAATTCCCGTTGGTTGGATATTGCTTGTGGTCGTGAGCATACTGCTGCTGTGGCTTCTGATGGATCGCTTTTTACATGGGGTTTGCCCTTTATTTACCTTCACTTTTCAGTATCCATGTTTTACCTCTATTTCTGATTTCAATTGACTCTCGTTTACTTCATGCTTGCCCAAAGATTTGATCTTTTTTCATCAGCTGTCTCTGTATTTCTGATATAAATTGGGTGGAATGAAGAAAGAAAACCATGTTCTTTAGTTTGATCATGCTATCTGATGAAATTGGGTTGAGAAAGAGTTTCTGAAGATTGGGTGTAACCCAAGAATGTGCCAGTTATAGTATTTATCTTCCAAATGAATGATGAATTCTCATGTAAACTGTGGCATCTTTTAATTTTTCCCTAACATGGTTTGATCTCGGTTGGGGTTATCTATTTGCCTCTAAAACCCATTGCCTTATTCTTACTGATAAAAAGGTCATTGCTCTATTTTGTTGGTTATTTATTGCCTTTCTTAATTGATCTTGTTACATTTTGTGTATTTTTGCTCAAATAAATTCCTTGGTGTAATACTTGTTTTTTATTCCTTTACTCAAAGAGATATGTTGCAAAGAAGACATCGCCACTTTATGCATTTTAAGTTGATATAGAACAATTAATTTTACTTGTAAAGTTTACCTCTTTGGGAAAAATCTAGATTTTAATTGATATTTGACAATTAATTTCAGAAGTCTGTTCCTGCTTTTGTTTGTGGGGAAGTTGATTTTCCTTGTAAGAGAGAGCACTCCTAATCTTTATACCTTCAAACAGGAGCTAACGAATTTGGTCAGCTGGGTGACGGAACTGAAAATGCTAGGAAGCACCCCAAGAAAGTGAAACAATTGCAATCTGAATTTGTTATTAGTGTTTCATGTGGAGCACATTGTACTGTTGCCATTGCAGAACCACGTGAAAACGATGGTAGCATGTCAGCTCGGAGACTTTGGGTTTGGGGACAGAACCAGGTCAGTCTCACAAAAAAAAAAACCTTCAAGCAGCTACCTTGTTTATTTGAGATCACAATTTGTTTGCCTGTGTTATTCTATGCAGGGATCCAATTACCCACGACTCTTTTGGGGTGCCTTTTCTCCTTCTACGGTACTATTTTTTCTTGAGAATGAACTTTTGTGGAGATATCTGTGTTTTTCATGCAAATACATTACTTCTGTTCTGTGTGGTCCTAGTGGGGCTTAAGCATTTATCTAGTCGCATTTATGTTATGATAGCAGATTTACCTTTACCTGAGTTCTCTATCTAATCTATGCCCCCAATTTTTTTGTTAAGAAGTTGCTTTCCATACAAAAACAACGGTGACTTAACATTCGCAGTGCGCAACAAATTTTATGATATATGTATGCTCTTTCAATTCATTCAGGTTATTCGCCAAGTTTCTTGTGGTGCTGTTCATGTTGTAGCTCTATCAGAAGAAGGGTTACTACAAGCTTGGGGTAATTTGCACTTTCTTAATTCACCTTTATATACAATTCTATGCTTAACATATCCTCTCAGTAATTTTGATGAAATCAGTGCACATATGTGTATGGATCTCTGTATGTGATTTTAATTTTTATGTGTACATCCTCTATCAGGTTACACAGCCTTAGAGTTAAAAACATATTGTGTCATGTATTAATGAAAATTTTGTCACTGCGCTGGTTAAGCAGGCTATAATGAATATGGTCAGCTTGGCAGAGGTGTTACATCAGAAGGCCTTCAAGGCCCTTGTGTAATTAATGGATATGCTAGATTTCTTGATGAAGCCCCTGAACTTGTGAAGATTACCCAAGTGTCATGCGGGGAGTACCATACTGCAGCTATATCAGAGAAAGGCGAGGTGTAAGTGTTCATTGGACCTTTCTTGATGGAGATAAGTTTTGATGCTAAACATGAGAATATGGTTATCCGCATGGCACAAGTGGACGTGGATTTCAGGGAAAATAAACCATAAAGATACACTACTTAATTTGCAGGATTTGTTTTTTCCATTTGTGGAACTTCTCTAATTTAATTGAAGTTGCCTGGTCCAACTGAAATATTACGTTTGTAAATTTCCTCATGGCTTCTGGATTTGATTATAGGATTTTGTTGGATAGTCATTACTAAGAAGATACCTAGAAACTACCCCATTTAGACATACACACTAGAAAAGGAAGATAGAGTTGTTCAGTTCTCTAGGAAGTTAAATGAATCTTCTGCTATTACTTTTAGTTTCTTTAGTAGAGACTTAGCATGATTGCTGCATTTTTCAGTATTCCTGTCTTAACTTTGTATGAGGGAAACAGTGGTGCATCCTTACTCATTTCTCCTTATGAGGTGGTATCAGTTTTGCTATGCATTAACTAAAATTTTGTTGTCTGAGTTTGTGTTAATTTGTATTCACTTTACTTAATTCTTCTGTTCACATGTTAGCTCTTTTAAATTTTTTGGTTATTTCGATCTTTTTTTTTAATTTGATGACCGTGGTGTCTGGACCAACTTTTGTGCACTTAGACGCATTCCACAGGATACCTGCCACGTCCTACTAGCAACAGAAGGTTAGAACAGATGGGAAGAATCATGATAAGTAGGGATTTTTTTTCATGAAGTTCTTTGAGATAATAAATTTCCTTCCAGAAAAGACCCCTAATAATATTGTACTAACATTTGCTTATGTTATAGCAAAGCTAAGTTCTCTTGTTTGCTAGTTCTTTCTTATGCTGGTACGAATTTCTTACCATAAATTGAACTTTTCTTGTGCTGTGATAAACACATCCATGCTCTCCCGAAAACTCTTAAATCAGAAGCGAATTGTGGCCCTCTCTCTACAATAAAAATAACTTTTAGCGGCAATAAATAGATACATTAATAAAGAGTGCTAAAGTCTTTACCGGCATTAGTTAAGTGTCATTAGATCCAATGTCGCTAAAGCCTTTAGTGACACATACAAAGAGTGCTTATTTAGCGGCAATTGCTAATTAATTGCCGCTAAAGCTCATTTTTAATGTAGTGTCTCCCACTTTGATCCCGTAGTCATTGACCCTTCATCAAATGAATAAGAAGCTTCACAACATGGATCTTCATGATGATCTACCATCTTGCAGTACCCCTCATTATACTTTAAGACTTAACAACCGACAGGGCTTGTGGACTTAAGCTGATATTATTGTTCTGAACTTCTTTTTGTTTAATTTCTTATTCACATATTTCATTGGATCTCTCGAAGTTCTGTACAAATTAGTGATGGTTATTTTTTGCTTTTCAACAGATACTACTCTACGGATCATTTGATTGATACCCTTCTTCTTTCCCCTGTCCATTTCTTAAGATTTTGATACAGGCTGACTTATCGTTCTATCATTGTGACTAACTACAGCTATACGTGGGGATTGGGGAGCGTGGGACAACTTGGCCATTGTTCACTTCAGTCAGGTGACAAGGAACTTTTACCTAGGCGTGTAGTTTCCCTTGATGGCATATGTATTAAAGAAGTTGCC-TGTGGTGGTGTTCACACCTGTGCTGTGACTGCGAAAGGGGCTCTTTATGCTTGGGGTGGAGGTCAGGCTGGGCAATTGGGAGTTGGGCCATTAAATGGATTCTTTTCATGCAAGCTCAATGAATCTGAGATGATGCTCCGAAATATACCAGTGTTGGTTGTTCCAGATGGTGTGCAACT</genome_strand>
        <mrna_strand>GATTTCTTTGGAGCTCAAACTGCAACCTTAGATTCTTCAAATTTTCCGGATAAAATTACTTCCATTGTTTCTCGATTTCATC......................................................................................................................TGAGAAATAAAATGGATATTGATGAAATACTTGGGGTATCTCGGCCTGTGAGTTTGACAAACAAGAGTGCTATTTATGTTTGGGGTTACAATCAATCTGGGCAAACGGGTCGGAGAGGGAAAGAGAGGAGTTTGAGGATCCCAAAACAGCTTCCTCCAGAGCTATTTGGATGCCCAGCTGGTGGGAATTCCCGTTGGTTGGATATTGCTTGTGGTCGTGAGCATACTGCTGCTGTGGCTTCTGATGGATCGCTTTTTACATGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTAACGAATTTGGTCAGCTGGGTGACGGAACTGAAAATGCTAGGAAGCACCCCAAGAAAGTGAAACAATTGCAATCTGAATTTGTTATTAGTGTTTCATGTGGAGCACATTGTACTGTTGCCATTGCAGAACCACGTGAAAACGATGGTAGCATGTCAGCTCGGAGACTTTGGGTTTGGGGACAGAACCAG.....................................................................................GGATCCAATTACCCACGACTCTTTTGGGGTGCCTTTTCTCCTTCTACG.....................................................................................................................................................................................................................................................................................GTTATTCGCCAAGTTTCTTGTGGTGCTGTTCATGTTGTAGCTCTATCAGAAGAAGGGTTACTACAAGCTTGGG........................................................................................................................................................................................................................GCTATAATGAATATGGTCAGCTTGGCAGAGGTGTTACATCAGAAGGCCTTCAAGGCCCTTGTGTAATTAATGGATATGCTAGATTTCTTGATGAAGCCCCTGAACTTGTGAAGATTACCCAAGTGTCATGCGGGGAGTACCATACTGCAGCTATATCAGAGAAAGGCGAGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATACGTGGGGATTGGGGAGCGTGGGACAACTTGGCCATTGTTCACTTCAGTCAGGTGACAAGGAACTTTTACCTAGGCGTGTAGTTTCCCTTGATGGCATATGTATTAAAGAAGTTGCCTTGTGGTGGTGTTCACACCTGTGCTGTGACTGCGAAAGGGGCTCTTTATGCTTGGGGTGGAGGTCAGGCTGGGCAATTGGGAGTTGGGCCATTAAATGGATTCTTTTCATGCAAGCTCAATGAATCTGAGATGATGCTCCGAAATATACCAGTGTTGGGTTGTCCAGATGGTGTGCAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U565337" ref_strand="-" ref_description="SGN-U565337 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|147791382|emb|CAN65617.1| (e_value=3e-86) hypothetical; (*ATH) AT3G02300.1 (e_value=1e-74)  Symbol: None | regulator of chromosome condensation (RCC1) family protein, weak similarity to UVB-resistance protein UVR8 (Arabidopsis thaliana) GI:5478530; contains Pfam profile PF00415: Regulator of chromosome condensation (RCC1) | chr3:461173-464... ; ">
      <seq>attctgatgagccctnactngtnagattanncanggtcatgcgngagtaccatactgcagctatatcagagaagggcgagntctatacgngggantggggagcgtgnnacnacttgncnattgttcacttcagtcaggtgacaaggaacttttacctaggcgtgtagtttcccttgatggcatatgtattaaagaagttgcctgtggtggtgttcacacctgtgctgtgactgcgaaaggggctctttatgcttggggtggaggtcaggctgggcaattgggagttgggccattaaatggattcttttcatgcaagctcaatgaatctgagatgatgctccgaaatataccagtgttggttgttccagatggcaggcaactcgttgcatgtggtcattcacacacacttacttctgctaaagacggacgaatacatggatggggttataactgctatggtcaagcggctaatgagaagtctacatatgcctggtgtccatcaccagttgattggtgtgttggggcagtccgaaaattggctgctggtggtggacattcagcagtgctgactgatgcatgctctctaaaagagctgtgtgaatttaggcttgcagaaacagtgaatccatccaatgcttcagtggttgaggatgtcgcctcaagaacaggagctgatgctttagcacgactttgtgaaagattgagggagcattactacaatgatgatgagtttggtctgtgaaatcattgatgggtgttaaatatgtaacataccaataattcagccattagatttgattcttcaatccatctaatacaatagagaaaacagagtctttgtttcatcattgaataaatgtattctactttttatgctgctgcatcattaagttaatacaacaaaacatctacttacaattcaaattag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="+" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="52924" stop="56143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53196" g_stop="53284" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.809"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53285" i_stop="54800" i_length="1516">
            <donor d_prob="0.923" d_score="0.90"/>
            <acceptor a_prob="0.990" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54801" g_stop="55232" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="513" r_length="431" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55233" i_stop="55318" i_length="86">
            <donor d_prob="0.253" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55319" g_stop="55510" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="705" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55511" i_stop="55625" i_length="115">
            <donor d_prob="0.256" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55626" g_stop="55850" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="706" r_stop="928" r_length="223" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="+" ref_id="SGN-U565337" ref_strand="-">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>938</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U565337" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="53196" e_stop="53284"/>
          <exon e_start="54801" e_stop="55232"/>
          <exon e_start="55319" e_stop="55510"/>
          <exon e_start="55626" e_stop="55850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTGATGAAGCCCCTGAACTTGTGAAGATTACCCAAGTGTCATGCGGGGAGTACCATACTGCAGCTATATCAGAGAAAGGCGAGGTGTAAGTGTTCATTGGACCTTTCTTGATGGAGATAAGTTTTGATGCTAAACATGAGAATATGGTTATCCGCATGGCACAAGTGGACGTGGATTTCAGGGAAAATAAACCATAAAGATACACTACTTAATTTGCAGGATTTGTTTTTTCCATTTGTGGAACTTCTCTAATTTAATTGAAGTTGCCTGGTCCAACTGAAATATTACGTTTGTAAATTTCCTCATGGCTTCTGGATTTGATTATAGGATTTTGTTGGATAGTCATTACTAAGAAGATACCTAGAAACTACCCCATTTAGACATACACACTAGAAAAGGAAGATAGAGTTGTTCAGTTCTCTAGGAAGTTAAATGAATCTTCTGCTATTACTTTTAGTTTCTTTAGTAGAGACTTAGCATGATTGCTGCATTTTTCAGTATTCCTGTCTTAACTTTGTATGAGGGAAACAGTGGTGCATCCTTACTCATTTCTCCTTATGAGGTGGTATCAGTTTTGCTATGCATTAACTAAAATTTTGTTGTCTGAGTTTGTGTTAATTTGTATTCACTTTACTTAATTCTTCTGTTCACATGTTAGCTCTTTTAAATTTTTTGGTTATTTCGATCTTTTTTTTTAATTTGATGACCGTGGTGTCTGGACCAACTTTTGTGCACTTAGACGCATTCCACAGGATACCTGCCACGTCCTACTAGCAACAGAAGGTTAGAACAGATGGGAAGAATCATGATAAGTAGGGATTTTTTTTCATGAAGTTCTTTGAGATAATAAATTTCCTTCCAGAAAAGACCCCTAATAATATTGTACTAACATTTGCTTATGTTATAGCAAAGCTAAGTTCTCTTGTTTGCTAGTTCTTTCTTATGCTGGTACGAATTTCTTACCATAAATTGAACTTTTCTTGTGCTGTGATAAACACATCCATGCTCTCCCGAAAACTCTTAAATCAGAAGCGAATTGTGGCCCTCTCTCTACAATAAAAATAACTTTTAGCGGCAATAAATAGATACATTAATAAAGAGTGCTAAAGTCTTTACCGGCATTAGTTAAGTGTCATTAGATCCAATGTCGCTAAAGCCTTTAGTGACACATACAAAGAGTGCTTATTTAGCGGCAATTGCTAATTAATTGCCGCTAAAGCTCATTTTTAATGTAGTGTCTCCCACTTTGATCCCGTAGTCATTGACCCTTCATCAAATGAATAAGAAGCTTCACAACATGGATCTTCATGATGATCTACCATCTTGCAGTACCCCTCATTATACTTTAAGACTTAACAACCGACAGGGCTTGTGGACTTAAGCTGATATTATTGTTCTGAACTTCTTTTTGTTTAATTTCTTATTCACATATTTCATTGGATCTCTCGAAGTTCTGTACAAATTAGTGATGGTTATTTTTTGCTTTTCAACAGATACTACTCTACGGATCATTTGATTGATACCCTTCTTCTTTCCCCTGTCCATTTCTTAAGATTTTGATACAGGCTGACTTATCGTTCTATCATTGTGACTAACTACAGCTATACGTGGGGATTGGGGAGCGTGGGACAACTTGGCCATTGTTCACTTCAGTCAGGTGACAAGGAACTTTTACCTAGGCGTGTAGTTTCCCTTGATGGCATATGTATTAAAGAAGTTGCCTGTGGTGGTGTTCACACCTGTGCTGTGACTGCGAAAGGGGCTCTTTATGCTTGGGGTGGAGGTCAGGCTGGGCAATTGGGAGTTGGGCCATTAAATGGATTCTTTTCATGCAAGCTCAATGAATCTGAGATGATGCTCCGAAATATACCAGTGTTGGTTGTTCCAGATGGTGTGCAACTCGTTGCATGTGGTCATTCACACACACTTACTTCTGCTAAAGACGGACGAATACATGGATGGGGTTATAACTGCTATGGTCAAGCGGCTAATGAGAAGTCTACATATGCCTGGTGTCCATCACCAGTTGATTGGTACGATTCGTGAGAACCAATGCTTGACTAGACGTTGGAAATCTTTTGATACAAAGTCATTTCTTATTCAAGTACCCTTTGTTCAGGTGTGTTGGGGCAGTCCGAAAATTGGCTGCTGGTGGTGGACATTCAGCAGTGCTGACTGATGCATGCTCTCTAAAAGAGCTGTGTGAATTTAGGCTTGCAGAAACAGTGAATCCATCCAATGCTTCAGTGGTTGAGGATGTCGCCTCAAGAACAGGAGCTGATGCTTTAGCACGACTTTGTGAAAGATTGAGGTAGAAATTCTACTGTTGAATGCCATGCTTCAGATGTTCAAAACCTGTCTTGCTCTAAAATGTCATTGCTCTAAAAGCGCTAGTAACTAAATTTATTTTTGTTGGGCATTTGCAGGGAGCATTACTACAATGATGATGAGTTTGGTCTGTGAAATCATTGATGGGTGTTAAATATGTAACATACCAATAATTCAGCCATTAGATTTGATTCTTCAATCCATCTAATACAATAGAGAAAACAGAGTCTTTGTTTCATCATTGAATAAATGTATTCTACTTTTTATGCTGCTGCATCATTAAGTTAATACAACAAAACATCTACTTACAATTTAACCATTAA</genome_strand>
        <mrna_strand>ATTC-TGATG-AG-CCCT-NACTNGT-NAGATTANNCANG-GTCATGC-GNGAGTACCATACTGCAGCTATATCAGAGAAGGGCGAGNT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATACG-NGGGANTGGGGAGCGTGNNACNACTTGNCNATTGTTCACTTCAGTCAGGTGACAAGGAACTTTTACCTAGGCGTGTAGTTTCCCTTGATGGCATATGTATTAAAGAAGTTGCCTGTGGTGGTGTTCACACCTGTGCTGTGACTGCGAAAGGGGCTCTTTATGCTTGGGGTGGAGGTCAGGCTGGGCAATTGGGAGTTGGGCCATTAAATGGATTCTTTTCATGCAAGCTCAATGAATCTGAGATGATGCTCCGAAATATACCAGTGTTGGTTGTTCCAGATGGCAGGCAACTCGTTGCATGTGGTCATTCACACACACTTACTTCTGCTAAAGACGGACGAATACATGGATGGGGTTATAACTGCTATGGTCAAGCGGCTAATGAGAAGTCTACATATGCCTGGTGTCCATCACCAGTTGATTG......................................................................................GTGTGTTGGGGCAGTCCGAAAATTGGCTGCTGGTGGTGGACATTCAGCAGTGCTGACTGATGCATGCTCTCTAAAAGAGCTGTGTGAATTTAGGCTTGCAGAAACAGTGAATCCATCCAATGCTTCAGTGGTTGAGGATGTCGCCTCAAGAACAGGAGCTGATGCTTTAGCACGACTTTGTGAAAGATTGAG...................................................................................................................GGAGCATTACTACAATGATGATGAGTTTGGTCTGTGAAATCATTGATGGGTGTTAAATATGTAACATACCAATAATTCAGCCATTAGATTTGATTCTTCAATCCATCTAATACAATAGAGAAAACAGAGTCTTTGTTTCATCATTGAATAAATGTATTCTACTTTTTATGCTGCTGCATCATTAAGTTAATACAACAAAACATCTACTTACAATTCAA--ATTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U583377" ref_strand="+" ref_description="SGN-U583377 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|13384068|gb|AAK21258.1|AF335245_1 (e_value=1e-96) MADS-box; (*ATH) AT1G69120.1 (e_value=1e-68) | Symbol: None | floral homeotic protein APETALA1 (AP1) / agamous-like MADS box protein (AGL7), identical to SP:P35631 Floral homeotic protein APETALA1 (AGL7 protein) {Arabidopsis thaliana} | chr1:25985999-25989919 REVERSE | Aliases: F4N2.9, F4N2_9; (*SWP) sp|Q41276|AP1_SINAL (e_value=3e-68) Floral homeotic protein APETALA 1 OS=Sinapis alba GN=AP1; ">
      <seq>gtctctatctatgctaggtagcttatatgatttaatagttcgattaatttaaatacgcattaaagatagaggatgggaagaggtagggtagagttgaaacggatcgagaacaaaataagcagacaagtaacattctcaaagagacgatctggattattgaagaaagctaatgagatctcagtattatgtgatgctgatgttgcattgattgtgttttctaccaaaggcaaacttttcgagtattcctcaaatgactcaagtatggaaagtattcttgaaagatatgaaagatgctcatatgcagagagacagatgaatgctaatgattctgatcccaaggaaaattggagtgtggagtatccgaagctcatgtcaagaattgaacttttacaaagaaatataaggcattacatgggtcaggatctggaccctctcagtttgcgtgagctccagagtatagagcaacagattgatacttcattaaagagaattagaagcaggaagaatcaactgatgcacgagtccatttctgagctgcagaaaaaggagaaagcgctccaagaacaaaacaacttgattactaagaagctaaaagaaaatgagaagacacaacccaactcatcaggccaaaactcagcaacagttcatgtgtttccatcacattctcaccaccaacttcctaaccttacaattgggggggcttttggaggaatgaacagagatggatcgggtcaggctcatcactatccgggttcaaataacaataataataattcctcattgataccgccatggatgctccgccacgtcagcaacgaaggatgaaataatattccggagagtataattaattaattgtatatgttttgttccaaacaatattaatcaactttcctgtttgtgatgtataattagcttaagctaataaaacttttcatcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="61026" stop="55616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60727" g_stop="60468" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60467" i_stop="57908" i_length="2560">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57907" g_stop="57829" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="339" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57828" i_stop="57090" i_length="739">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57089" g_stop="57025" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="404" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57024" i_stop="56862" i_length="163">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56861" g_stop="56762" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="504" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56761" i_stop="56683" i_length="79">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56682" g_stop="56641" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="546" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="56640" i_stop="56513" i_length="128">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="56512" g_stop="56471" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="588" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="56470" i_stop="56385" i_length="86">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="56384" g_stop="56278" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="695" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="56277" i_stop="56163" i_length="115">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="56162" g_stop="55916" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="696" r_stop="942" r_length="247" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-U583377" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>942</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U583377" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60727" e_stop="60468"/>
          <exon e_start="57907" e_stop="57829"/>
          <exon e_start="57089" e_stop="57025"/>
          <exon e_start="56861" e_stop="56762"/>
          <exon e_start="56682" e_stop="56641"/>
          <exon e_start="56512" e_stop="56471"/>
          <exon e_start="56384" e_stop="56278"/>
          <exon e_start="56162" e_stop="55916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTATCTATGCTAGGTAGCTTATATGATTTAATAGTTCGATTAATTTAAATACGCATTAAAGATAGAGGATGGGAAGAGGTAGGGTAGAGTTGAAACGGATCGAGAACAAAATAAGCAGACAAGTAACATTCTCAAAGAGACGATCTGGATTATTGAAGAAAGCTAATGAGATCTCAGTATTATGTGATGCTGATGTTGCATTGATTGTGTTTTCTACCAAAGGCAAACTTTTCGAGTATTCCTCAAATGACTCAAGGTACTACTCTACCAATTTTATTCGAAATCTATGACTAAACGCTGCTATAGTTTTTTTCTATTGAAGCAACAAAATGATGTTTTACCTTTAAAAATTCCTAATTAGTGTATATATATATATATATATATATGTCATGTTAGTGTTTTGGTTTTTTATTTTTGACATAATTAGGTCACAAAAGTAATGAAGGAAAATTAAATCATATATGCTATGTATATTTAGTAAGCTAATTATTGATCAGCTCATTGATGTCCTCATGCACTAATTTGAGTAATTTCTATAATTGTTTGTATGGTAACTTATTACTTTATCTTTTCTCATTACATACGATTTAGATCGTTTGTTCTTAGCTTGGTGAATTTATTACATTGAAACTAGATCTCCTATTTCTTTCCAAAGAGTAAATCAAGTGATTATTGATCAGTAATCATGAACACATATTTCATACTTCTTAGCTCCCGTTTTGCCTTAGATTTTGAAACTTGAAAATTTGAGTTTTTTTTTTTTGAAAGTGTGCATTTCGGAACAAAAATTGTGTTAGAATTTTTACTTGGAAAATTTTTGAAGTTTTGTGAGCGAAAGTAAAAGTCATTCAACCTACTAAATAGTTTTGGAAATTTATCTAAAATTTATGACCAAAAGCTAACTTCATCATTGAAGCATTGAAATTTATTTATATTTGCTACACGAAATAAAAATGATATTTTACCCTTCAAATATCCCTAAAACTACCCTCATAAGTATATTACTTCCCTTGTGTTTTCCATGTATATTTTGCAGGTAGTCATGTTAGTGTATATTGACATAATTACATTACAATTAGATGAAATGCACAAAATACAACAAATTAAAAGCAAAAGCTGAAGAAAGAGCATTTCATTTTAAAGCCTAGAGCCTTGTGCCTCTTTGTCAGTTCATTCACTGATATATAGTACGAGGAGCACTCTTAATGACGTACATGTACTCCAATTATATTACTAACATTAATGATAACGCAGAGATTCTTTATACTGTCAACGTATAAATTATCTTCTGGTCAATTGATCTCTATTAATGACAAGTTAAATCTTATTAGTCGTTTGGTTTTCCGAACGAATTAATATTGATCCAAATCCTTCAGTTAGTTGTTTATAGTCTATGATTTCATGTTATATTAAAATTGATAAATAATCTTCTTGAAGTTTGTAATAGCAATGAATACATAACGAGTTATGTAAATCATGAGTTTAAAAGACCTACTAACTAGATTTGTTGAGGCCTCTAATATAGTTTTAACTTATTAAAGGCATATCTTATACAACATTGATAAATCTAAATGATTATGATGAATCTTGTAGAACAGACACAATTTTGTGGCAAAATATTGTCAAACAATCTCATCCAGCTACAAAAAAGAAAAGGCACAATCTAGGTATAGCTTTACCTGTTATAGTAAATTGTAAGCAACTTTTTATTTGATCATGAATGGAAGCTTTAATTAACAACCAAAACATAGCTAATGTAATTCTACAGGTGGAGTCTAAAGAGAATAGAGCTAATGTCATTACCTCAAAAATGATCACTAGTGACAATTAATTCTTAATTACTGTTAAGAATGTGTATTTTTAGCGGCAACTACCATTCTTTGTATATGTCCCTAAAACCTTCAGTTGCATCGGTTCGAATGAGACTTAACTAATGAAGGTAAAGACTTTACCACTCTTTATTAATGTCAATATTTATTGCCGCTAAAAATTATTTTTGTTGTAGTGTGTATGCTGACCCTACCCCTGATTATTGTACAGAGATAGAGTATTTATTGTCTCCGAAAGACCCTCAACTCAAATAACTTGCACCAAAGTAGTGTGAAAAGGAAAATATAGAACTAAAGAAAACATAGCAAATAATAGGGAAAGGACATGAAAATAATGTGATAAACTAAAAACAAGAAACAACCAGTAGTAACAGAAATTGGAGAACAAAAATCTACGAAAATATTGTTAATACTATAGGTATGAAAGGAGATAAATGCACACTGCACCAAACTACCACCAAACCTATACCATAGGAAAGCAAGATGATGTTTAACTACGTACTTACCTTCAACCCTTTACCACGATCTCGATATCCTCCTATCTAAGATCATATTCCGTAAATTCATGCATGTGTGTCTAATTAATCACCCTTATCCAATATTTTTTTAGTCTACCTCTACCCCTCTTTAAACCCACCATTGTCGATTTCTCACACGTTCTCACTTGGGCATTTGCACATCTCTACGTCACAGACTCAATCATCTCAGCTTCGCTTCTCTCATCTTAGCCACCATGGATGCCACTCTAATAAATAGATCTATCTCTTTCATTTTGAATTGATATACCTGACCTGATTAAAATGCAAAAAACTTCTCATTCTAAAATAACCTAGTTAGAATCCTATTTAAGTAATATTGTATATCAATGGAAAAATTACCAACTGTAAATGAAAAAATAAAATAAAATTTTATACTATTAGGTCATGTAGTTAAGTTCAATATGCTTACTGGCTTATAATTTTTTTTTTGTTTATTTTTTGATTTTAGTATGGAAAGTATTCTTGAAAGATATGAAAGATGCTCATATGCAGAGAGACAGATGAATGCTAATGATTCTGATCCCAAGGTAAATGCAAATTAATAAATTTCAAATGTTTCTTTCTCTTGATTTATCCTTTAAATTTTATCATTGTTGGTTAAAAAAAAAACGAGGTCTTATAATGAAATATTGAAAGACTCTCTCCATTTTAATTTATATAATTCTTTTCCAATTTAAGTCAATCTAAAAATGATTATGGCCTTTTTTTCCACATTTGGAAAGAACCAAATTAATTAAAGCTTGCTACTTTATTTTTATTAGCAAGTCTCTATAGTAGATAGAAAAAAATGCTGTGAAAAATCTAAAATCATATGTAGAAGTCTTATTTTTTTCATAAATTTTGTGTATAATCAAATTGGTTCTTTACATAAAATGAATGGAAGATACTATTAAAGTGAAATACTTGCAGCATTTTTAAGTTAGAATTTTTTATTTTCACTCAGTGGCATAGCCACATAGAGATTAGGGTGTTCAATTGTCGGAAAAAAAGAACATGTATACTAACTAGTAAATGATTAAATAATATATTTTGGATATTCTTAACATAACAAGCTGCTATTTCTGAACAACTTTTAAGAAATTTCTGGATGCCACTGTTCTCACCAACTTTAGTCCAAGCAAAGTTCATGTTTTGAACATATAAAGCATACTTCAAATACATTTCCCCCCTCAATAAATTTCAAATTTAATATTTTCCCAGGCACTTGCTAATTAGTTTTCTAGTCTTTTGTTTTCCTTTTGATCTCATTAGATGTATTTGTTGTAGGAAAATTGGAGTGTGGAGTATCCGAAGCTCATGTCAAGAATTGAACTTTTACAAAGAAATATAAGGTATGCATACCCCTTCACTTCATTAGTAGTAATACACATGAAAAATGGGCGAATTCTTTCTACATTTGCAAAAGACGATGTAAGCCCATTTTTAATTGACACGTGAAAACAGTGTCTGTTTTAACGCCGAATTCAAATTGTTCATATAATATTAATTGTGTAGGCATTACATGGGTCAGGATCTGGACCCTCTCAGTTTGCGTGAGCTCCAGAGTATAGAGCAACAGATTGATACTTCATTAAAGAGAATTAGAAGCAGGAAGGTCCGTATTAATTAATTACTAATTGATATCAACTGTAGTTAATCTTTAAGGTTAATAGTATAAATTGAATAATATGCAGAATCAACTGATGCACGAGTCCATTTCTGAGCTGCAGAAAAAGGTAATAACGATATACTATTAATATTCTTCTCCATCGTCAATAATTATTCGGATTTACTTGAATCTATACAGTGTTTCTGTATTTATGATATTTGTGTTATAAGTAATACTTGCACTATATATGAGCAGGAGAAAGCGCTCCAAGAACAAAACAACTTGATTACTAAGAAGGTATACATACATATATTTTGCTTTCTAATATCTCAAACTTGTTCAATTTCTATCTGTCTCTATCTATAAATGTGAACCGAAAACAGCTAAAAGAAAATGAGAAGACACAACCCAACTCATCAGGCCAAAACTCAGCAACAGTTCATGTGTTTCCATCACATTCTCACCACCAACTTCCTAACCTTACAATTGGGTACGTACGAATAAATTTTACACTATCAGATTACCTAAAAAACATAATCATTGCGACATATAATTGCTTAACAACAAAATGTTTTCTGTATCCATATATTATATGTGTTGATCAGGGGGGCTTTTGGAGGAATGAACAGAGATGGATCGGGTCAGGCTCATCACTATCCGGGTTCAAATAACAATAATAATAATTCCTCATTGATACCGCCATGGATGCTCCGCCACGTCAGCAACGAAGGATGAAATAATATTCCGGAGAGTATAATTAATTAATTGTATATGTTTTGTTCCAAACAATATTAATCAACTTTCCTGTTTGTGATGTATAATTAGCTTAAGCTAATAAAACTTTTCATCCTT</genome_strand>
        <mrna_strand>GTCTCTATCTATGCTAGGTAGCTTATATGATTTAATAGTTCGATTAATTTAAATACGCATTAAAGATAGAGGATGGGAAGAGGTAGGGTAGAGTTGAAACGGATCGAGAACAAAATAAGCAGACAAGTAACATTCTCAAAGAGACGATCTGGATTATTGAAGAAAGCTAATGAGATCTCAGTATTATGTGATGCTGATGTTGCATTGATTGTGTTTTCTACCAAAGGCAAACTTTTCGAGTATTCCTCAAATGACTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGAAAGTATTCTTGAAAGATATGAAAGATGCTCATATGCAGAGAGACAGATGAATGCTAATGATTCTGATCCCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATTGGAGTGTGGAGTATCCGAAGCTCATGTCAAGAATTGAACTTTTACAAAGAAATATAAG...................................................................................................................................................................GCATTACATGGGTCAGGATCTGGACCCTCTCAGTTTGCGTGAGCTCCAGAGTATAGAGCAACAGATTGATACTTCATTAAAGAGAATTAGAAGCAGGAAG...............................................................................AATCAACTGATGCACGAGTCCATTTCTGAGCTGCAGAAAAAG................................................................................................................................GAGAAAGCGCTCCAAGAACAAAACAACTTGATTACTAAGAAG......................................................................................CTAAAAGAAAATGAGAAGACACAACCCAACTCATCAGGCCAAAACTCAGCAACAGTTCATGTGTTTCCATCACATTCTCACCACCAACTTCCTAACCTTACAATTGG...................................................................................................................GGGGGCTTTTGGAGGAATGAACAGAGATGGATCGGGTCAGGCTCATCACTATCCGGGTTCAAATAACAATAATAATAATTCCTCATTGATACCGCCATGGATGCTCCGCCACGTCAGCAACGAAGGATGAAATAATATTCCGGAGAGTATAATTAATTAATTGTATATGTTTTGTTCCAAACAATATTAATCAACTTTCCTGTTTGTGATGTATAATTAGCTTAAGCTAATAAAACTTTTCATCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U583379" ref_strand="+" ref_description="SGN-U583379 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|13384068|gb|AAK21258.1|AF335245_1 (e_value=2e-48) MADS-box; (*ATH) AT1G69120.1 (e_value=1e-35) | Symbol: None | floral homeotic protein APETALA1 (AP1) / agamous-like MADS box protein (AGL7), identical to SP:P35631 Floral homeotic protein APETALA1 (AGL7 protein) {Arabidopsis thaliana} | chr1:25985999-25989919 REVERSE | Aliases: F4N2.9, F4N2_9; (*SWP) sp|Q41276|AP1_SINAL (e_value=4e-35) Floral homeotic protein APETALA 1 OS=Sinapis alba GN=AP1; ">
      <seq>ggaaagcaagatgatgtttaactacgtacttaccttcaaccctttaccacgatctcgatatcctcctatctaagatcatattccgtaaattcatgcatgtgtgtctaattaatcacccttatccaatatttttttagtctacctctacccctctttaaacccaccattgtcgatttctcacacgttctcacttgggcatttgcacatctctacgtcacagactcaatcatctcagcttcgcttctctcatcttagccaccatggatgccactctaataaatagatctatctctttcattttgaattgatatacctgacctgattaaaatgcaaaaaacttctcattctaaaataacctagttagaatcctatttaagtaatattgtatatcaatggaaaaattaccaactgtaaatgaaaaaataaaataaaattttatactattaggtcatgtagttaagttcaatatgcttactggcttataattttttttttgtttattttttgattttagtatggaaagtattcttgaaagatatgaaagatgctcatatgcagagagacagatgaatgctaatgattctgatcccaaggaaaattggagtgtggagtatccgaagctcatgtcaagaattgaacttttacaaagaaatataaggcattacatgggtcaggatctggaccctctcagtttgcgtgagctccagagtatagagcaacagattgatacttcattaaagagaattagaagcaggaagaatcaactgatgcacgagtccatttctgagctgcagaaaaaggagaaagcgctccaagaacaaaacaacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="58721" stop="56183"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58421" g_stop="57829" g_length="593"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="593" r_length="593" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57828" i_stop="57090" i_length="739">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57089" g_stop="57025" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="658" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57024" i_stop="56862" i_length="163">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56861" g_stop="56762" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="659" r_stop="758" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56761" i_stop="56683" i_length="79">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56682" g_stop="56641" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="759" r_stop="800" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56640" i_stop="56513" i_length="128">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56512" g_stop="56483" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="801" r_stop="830" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-U583379" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>830</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U583379" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58421" e_stop="57829"/>
          <exon e_start="57089" e_stop="57025"/>
          <exon e_start="56861" e_stop="56762"/>
          <exon e_start="56682" e_stop="56641"/>
          <exon e_start="56512" e_stop="56483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAGCAAGATGATGTTTAACTACGTACTTACCTTCAACCCTTTACCACGATCTCGATATCCTCCTATCTAAGATCATATTCCGTAAATTCATGCATGTGTGTCTAATTAATCACCCTTATCCAATATTTTTTTAGTCTACCTCTACCCCTCTTTAAACCCACCATTGTCGATTTCTCACACGTTCTCACTTGGGCATTTGCACATCTCTACGTCACAGACTCAATCATCTCAGCTTCGCTTCTCTCATCTTAGCCACCATGGATGCCACTCTAATAAATAGATCTATCTCTTTCATTTTGAATTGATATACCTGACCTGATTAAAATGCAAAAAACTTCTCATTCTAAAATAACCTAGTTAGAATCCTATTTAAGTAATATTGTATATCAATGGAAAAATTACCAACTGTAAATGAAAAAATAAAATAAAATTTTATACTATTAGGTCATGTAGTTAAGTTCAATATGCTTACTGGCTTATAATTTTTTTTTTGTTTATTTTTTGATTTTAGTATGGAAAGTATTCTTGAAAGATATGAAAGATGCTCATATGCAGAGAGACAGATGAATGCTAATGATTCTGATCCCAAGGTAAATGCAAATTAATAAATTTCAAATGTTTCTTTCTCTTGATTTATCCTTTAAATTTTATCATTGTTGGTTAAAAAAAAAACGAGGTCTTATAATGAAATATTGAAAGACTCTCTCCATTTTAATTTATATAATTCTTTTCCAATTTAAGTCAATCTAAAAATGATTATGGCCTTTTTTTCCACATTTGGAAAGAACCAAATTAATTAAAGCTTGCTACTTTATTTTTATTAGCAAGTCTCTATAGTAGATAGAAAAAAATGCTGTGAAAAATCTAAAATCATATGTAGAAGTCTTATTTTTTTCATAAATTTTGTGTATAATCAAATTGGTTCTTTACATAAAATGAATGGAAGATACTATTAAAGTGAAATACTTGCAGCATTTTTAAGTTAGAATTTTTTATTTTCACTCAGTGGCATAGCCACATAGAGATTAGGGTGTTCAATTGTCGGAAAAAAAGAACATGTATACTAACTAGTAAATGATTAAATAATATATTTTGGATATTCTTAACATAACAAGCTGCTATTTCTGAACAACTTTTAAGAAATTTCTGGATGCCACTGTTCTCACCAACTTTAGTCCAAGCAAAGTTCATGTTTTGAACATATAAAGCATACTTCAAATACATTTCCCCCCTCAATAAATTTCAAATTTAATATTTTCCCAGGCACTTGCTAATTAGTTTTCTAGTCTTTTGTTTTCCTTTTGATCTCATTAGATGTATTTGTTGTAGGAAAATTGGAGTGTGGAGTATCCGAAGCTCATGTCAAGAATTGAACTTTTACAAAGAAATATAAGGTATGCATACCCCTTCACTTCATTAGTAGTAATACACATGAAAAATGGGCGAATTCTTTCTACATTTGCAAAAGACGATGTAAGCCCATTTTTAATTGACACGTGAAAACAGTGTCTGTTTTAACGCCGAATTCAAATTGTTCATATAATATTAATTGTGTAGGCATTACATGGGTCAGGATCTGGACCCTCTCAGTTTGCGTGAGCTCCAGAGTATAGAGCAACAGATTGATACTTCATTAAAGAGAATTAGAAGCAGGAAGGTCCGTATTAATTAATTACTAATTGATATCAACTGTAGTTAATCTTTAAGGTTAATAGTATAAATTGAATAATATGCAGAATCAACTGATGCACGAGTCCATTTCTGAGCTGCAGAAAAAGGTAATAACGATATACTATTAATATTCTTCTCCATCGTCAATAATTATTCGGATTTACTTGAATCTATACAGTGTTTCTGTATTTATGATATTTGTGTTATAAGTAATACTTGCACTATATATGAGCAGGAGAAAGCGCTCCAAGAACAAAACAACTTG</genome_strand>
        <mrna_strand>GGAAAGCAAGATGATGTTTAACTACGTACTTACCTTCAACCCTTTACCACGATCTCGATATCCTCCTATCTAAGATCATATTCCGTAAATTCATGCATGTGTGTCTAATTAATCACCCTTATCCAATATTTTTTTAGTCTACCTCTACCCCTCTTTAAACCCACCATTGTCGATTTCTCACACGTTCTCACTTGGGCATTTGCACATCTCTACGTCACAGACTCAATCATCTCAGCTTCGCTTCTCTCATCTTAGCCACCATGGATGCCACTCTAATAAATAGATCTATCTCTTTCATTTTGAATTGATATACCTGACCTGATTAAAATGCAAAAAACTTCTCATTCTAAAATAACCTAGTTAGAATCCTATTTAAGTAATATTGTATATCAATGGAAAAATTACCAACTGTAAATGAAAAAATAAAATAAAATTTTATACTATTAGGTCATGTAGTTAAGTTCAATATGCTTACTGGCTTATAATTTTTTTTTTGTTTATTTTTTGATTTTAGTATGGAAAGTATTCTTGAAAGATATGAAAGATGCTCATATGCAGAGAGACAGATGAATGCTAATGATTCTGATCCCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATTGGAGTGTGGAGTATCCGAAGCTCATGTCAAGAATTGAACTTTTACAAAGAAATATAAG...................................................................................................................................................................GCATTACATGGGTCAGGATCTGGACCCTCTCAGTTTGCGTGAGCTCCAGAGTATAGAGCAACAGATTGATACTTCATTAAAGAGAATTAGAAGCAGGAAG...............................................................................AATCAACTGATGCACGAGTCCATTTCTGAGCTGCAGAAAAAG................................................................................................................................GAGAAAGCGCTCCAAGAACAAAACAACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U581481" ref_strand="+" ref_description="SGN-U581481 Tomato 200607#2 [89 ESTs aligned] (*GB) gi|17432174|emb|CAC83066.1| (e_value=6e-123) MADS-box protein [Lycopersicon esculentum]; (*ATH) AT5G15800.1 (e_value=8e-77)  Symbol: None | developmental protein SEPALLATA1 / floral homeotic protein (AGL2) (SEP1), identical to developmental protein SEPALLATA1 / floral homeotic protein (AGL2 / SEP1) SP:P29382 from (Arabidopsis thaliana) | chr5:5151080-5154156 REVERSE | Ali... ; (*SWP) sp|P29382|SEP1_ARATH (e_value=7e-76) Developmental protein SEPALLATA 1 OS=Arabidopsis thaliana GN=SEP1; ">
      <seq>tcccggcacgaggctaaagctctaaggtatctaaatttggagtacctaagcaaatcctaaagttaaaacaatgaatccctaaagaagataggaagaaatgccatagataaaaacaacccatgttcactttttctctctctaaacattgaaattcaaccaaaacaaaaaacaaaagttgataagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagttgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaatatgctcaaaacacttgataggtaccaaaagtgcagctatggaacattggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggggcctctgactatagatgatcttgagcatcttgaagtccaactagatacttccctcaaacacattaggtccaccaggacacaaatgatgcttgatcagctttctgatcttcaaactaaggagaaattgtggaatgaggctaacaaggttcttgaaagaaagatggaagaaatatatgctgaaaacaacatgcaacaagcatggggtggtggtgagcaaagtctcaattatggtcagcagcaacatcctcaatctcagggtttcttccaacctctagagtgcaactcttccttgcaaattgggtacgatccaataacaacttcaagccaaataacagcagtaacaaatgcccaaaacgtgaatggtatgatacctggttggatgctgtgaatgaaaaagtcctttatcttcagctttgcataaaagcatatgaagtatatttctataataataaaggaaaactccagtacctttattttcagcaaaataccctaattaaggtgaacgttgtgaaccattttctttgcataaaaacaaacttgtttgcttggaaatgttttattttattcaaatcataatgtggatgttgctgaatatgatgattattagcatctttcatgtgaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="74923" stop="69759"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74615" g_stop="74096" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="532" r_length="520" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74095" i_stop="72628" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72627" g_stop="72549" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="611" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72548" i_stop="72311" i_length="238">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72310" g_stop="72246" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="676" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72245" i_stop="71382" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71381" g_stop="71282" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="677" r_stop="776" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71281" i_stop="71204" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71203" g_stop="71162" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="777" r_stop="818" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71161" i_stop="71084" i_length="78">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71083" g_stop="71042" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="819" r_stop="860" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="71041" i_stop="70742" i_length="300">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="70741" g_stop="70602" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="861" r_stop="1000" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="70601" i_stop="70384" i_length="218">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="70383" g_stop="70059" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1001" r_stop="1325" r_length="325" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-U581481" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1313</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U581481" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74615" e_stop="74096"/>
          <exon e_start="72627" e_stop="72549"/>
          <exon e_start="72310" e_stop="72246"/>
          <exon e_start="71381" e_stop="71282"/>
          <exon e_start="71203" e_stop="71162"/>
          <exon e_start="71083" e_stop="71042"/>
          <exon e_start="70741" e_stop="70602"/>
          <exon e_start="70383" e_stop="70059"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAAAGCTCTAAGGTATCTAAATTTGGAGTACCTAAGCAAATCCTAAAGTTAAAACAATGAATCCCTAAAGAAGATAGGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAGTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGGGTAAGCTTAACTTATAACAAATTTTTAGACCAATTTCAATTCAAGTATTCTGATTGTTATCTTCTGGCTGCTCTATAGACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAGGTATTCTCATTTGATTCTAAAATGGTCAACATGATGCATGTGTTCAATAGTTAGTAACTTACTATTTTATCATAACAGGAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAGGTAGGTTGCCCATACATGTGATTCTAACTCATTTTCTAGCTCCATGTATATTACTAGTTGTATTGTGATTGATTTTTGTTAGATTAGGTTTATTTTTCGTCAATTTTTTTTTTTTTACCTAACTAAGTTGCTAAAGTAAAGTATTTCTGTTGAAGAGTCTCACATCGGCTCTTTTTAAGGAATGGGTATATGGGAAATTGTGAGCTAGTTTTTAGGGTTCAGTAATTATTAAGCCGAAGATCAATATTCCTTATTGATTGATGTACCAAAGTCATTGAATTGCATATAATTTGTTAGCAGATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGGGTAAATTCTACCATATTCATTCTATATATATCTTAATTTTTAATTTATCCTATCTATTTTACATCTGCCCATTAGTTCACAAGTGAGATTTTTTGAAAAAAAAAAGGAAGAAGCAAAACAAATATAGCTTTTCATACTCTAGAGATATCGATGAAAGTTATTCACACAATTAAAGTGCTTGGCTAAAACAAAAATGTTATTGTTTTGATTTAATGCAGGTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCCCAAAACGTGAATGGTATGATACCTGGTTGGATGCTGTGAATGAAAAAGTCCTTTATCTTCAGCTTTGCATAAAAGCATATGAAGTATATTTCTATAATAATAAAGGAAAACTCCAGTACCTTTATTTTCAGCAAAATACCCTAATTAAGGTGAACGTTGTGAACCATTTTCTTTGCATAAAAACAAACTTGTTTGCTTGGAAATGTTTTATTTTATTCAAATCATAATGTGGATGTTGCTGAATATGATGATTATTAGCATCTTTCATGTGAATTC</genome_strand>
        <mrna_strand>GCTAAAGCTCTAAGGTATCTAAATTTGGAGTACCTAAGCAAATCCTAAAGTTAAAACAATGAATCCCTAAAGAAGATAGGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGG..............................................................................ACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAG..............................................................................GAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAG............................................................................................................................................................................................................................................................................................................ATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGG..........................................................................................................................................................................................................................GTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCCCAAAACGTGAATGGTATGATACCTGGTTGGATGCTGTGAATGAAAAAGTCCTTTATCTTCAGCTTTGCATAAAAGCATATGAAGTATATTTCTATAATAATAAAGGAAAACTCCAGTACCTTTATTTTCAGCAAAATACCCTAATTAAGGTGAACGTTGTGAACCATTTTCTTTGCATAAAAACAAACTTGTTTGCTTGGAAATGTTTTATTTTATTCAAATCATAATGTGGATGTTGCTGAATATGATGATTATTAGCATCTTTCATGTGAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U583817" ref_strand="+" ref_description="SGN-U583817 Tomato 200607#2 [23 ESTs aligned] (*GB) gi|147815608|emb|CAN65976.1| (e_value=0) hypothetical; (*ATH) AT5G15810.1 (e_value=0)  Symbol: None | N2,N2-dimethylguanosine tRNA methyltransferase family protein, similar to SP:Q9P804 N(2),N(2)-dimethylguanosine tRNA methyltransferase (EC 2.1.1.32) (tRNA(guanine-26,N(2)-N(2)) methyltransferase) {Schizosaccharomyces pombe}; contains ... ; (*SWP) sp|Q9LFU5|TRM1_ARATH (e_value=0) Probable N(2),N(2)-dimethylguanosine tRNA methyltransferase OS=Arabidopsis thaliana GN=At5g15810; ">
      <seq>gccgaagagcaagcactagggttttttgtggtgcattcctatatttattgtctccactttcattccccaaaatttctttttatttgagcttcataattgccgcaattaggcgttagtttctccattatcacacaaaccgtcaatggcgggtgacaacggaaacaagcagaatggaacttcttttgatctcaatgacttcaccatcatcaaagaaggagatgctgagattcttatgcatgccaaaaatgaagttttctacaacaattcccaggtgaataatagagacatgtctatagctgttttgaggacatttatatcacaacgaaagctagaacatgacgcaatgttagctagacgaaccaaggctggaaataaggcacctaatgctaaagtggaaaacccaggtgattcagtgcagcataatggtgaatccactgatggatcggaagtcttgaaagacgcatcccatggtgaatcatctagcattccagtggaacagaataaaaatctgcggggaaaaggccgagaagaactaaagcctccacgagttctcgaggctctctcagcttctggattgagggctttaaggtatgctcgtgaagtagaaggaattagccaggtcgtggcccttgacaatgacaaagcctctgtggaagcttgcaggagaaacattaagtttaatggttcagtggcatgctctaaggtggaatctcaccttgctgatgcaagggtttatatgcttacccacccaaacgaatttgatgtggttgatctcgatccttatggagcaccttctgtgttcttagactcagcagtccaatctgttgctgatggaggaatgttgatgtgtactgcaactgatatggcagtcttatgtgcagcaaatggagaagtttgctattccaaatatggctcctatcctttgagaggaaaatattgtcatgaaatggctttgcggatccttcttgcatctattgagagccatgcaaatcgatataagagatatatagttccagtattatctgttcagatggatttctatgttcgcgtttttgttcgtatatacacttctgcaagtgatgtgaaaaatactcctttgaagctctcatatgtctatcaatgcattggctgcgactcatttcatcttcagacagttgggaggacagtctcaaaggataagagtgtccgatgcctccctggatttggccctgcagttcctcaagagtgtagtgattgtggtaagaaattcaacatgggtggacccatatggtctgcccccattcatgatcaagaatgggtagctgccatgcttgcaaatgtgaaatcaatgaaggaacgctatcctgcttatgagcggatctctgctgtattgacaactatatcagaggaactacctgatattcctctgtttctgagtttgcacaatctctgtgcaacactaaaatgcacttctccctcggcagtaatatttcgctctgctgtgatcaacgcaggatatcgcatatcagggactcatgtgaatcctttggggttgaaaacagatgctcctatgaatgtcatttgggatatcatgcgttgctgggtcagaaatcatcctgtgaaagcacaaccatctgaccagtctggaagtgtgattcttgctaaggagcctgttctgcaggctaattttgctcgggctgttgcatcccttagccaggcacaagccaagaaggttgcgcgtttcctccctaatcctgagaggaattggggtccaaaactaagggcaggccggcagatcaccagtaagcatgtgtctcttttgggtcctaaagcattgaatgcaattagcaaccatggggatggcgagggtagcaacaatgagaacggcgatgtcagcaaccatgagaatggcgatggtagcaaccatgagaatggtaatggtagcaaccatgaggatgtcgaggagcctgcagccaagcgtaagaagaccgaagaatctgattcataacttatatatcttggccaagtgtctgcagtttttatcccatcataatccatctcttctgctgcattttcttgcagagtgagatccatcttctttctgataactgtgaaaacgtctatcgataatggggaggatttcatcttgtttatctcaagtatactttttaatttttaaaggtattttaggctatttatatttattttgtttgtcccttttttccttcatttcaatcttaattccagtgctgtattaaattttgtttttcattttcatttatcagaaaactactctgtaacatggcttgcgttgtctatttgatcttttatgtcgacgaacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="+" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="88149" stop="97780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88449" g_stop="88719" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88720" i_stop="90693" i_length="1974">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.081" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90694" g_stop="90978" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="556" r_length="285" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90979" i_stop="91074" i_length="96">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91075" g_stop="91162" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="644" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91163" i_stop="91595" i_length="433">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91596" g_stop="91717" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="766" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="91718" i_stop="91934" i_length="217">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91935" g_stop="92074" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="767" r_stop="906" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="92075" i_stop="92158" i_length="84">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.111" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92159" g_stop="92231" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="907" r_stop="979" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="92232" i_stop="92541" i_length="310">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="92542" g_stop="92630" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="980" r_stop="1068" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="92631" i_stop="92722" i_length="92">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.623" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="92723" g_stop="92828" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1069" r_stop="1174" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="92829" i_stop="93558" i_length="730">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="93559" g_stop="93771" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1175" r_stop="1387" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="93772" i_stop="94590" i_length="819">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="94591" g_stop="94696" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1388" r_stop="1493" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="94697" i_stop="96034" i_length="1338">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="96035" g_stop="96123" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1494" r_stop="1582" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="96124" i_stop="96261" i_length="138">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="96262" g_stop="96339" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1583" r_stop="1660" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="96340" i_stop="96817" i_length="478">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="96818" g_stop="97480" g_length="663"/>
          <reference_exon_boundary r_type="cDNA" r_start="1661" r_stop="2323" r_length="663" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="+" ref_id="SGN-U583817" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>2323</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U583817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88449" e_stop="88719"/>
          <exon e_start="90694" e_stop="90978"/>
          <exon e_start="91075" e_stop="91162"/>
          <exon e_start="91596" e_stop="91717"/>
          <exon e_start="91935" e_stop="92074"/>
          <exon e_start="92159" e_stop="92231"/>
          <exon e_start="92542" e_stop="92630"/>
          <exon e_start="92723" e_stop="92828"/>
          <exon e_start="93559" e_stop="93771"/>
          <exon e_start="94591" e_stop="94696"/>
          <exon e_start="96035" e_stop="96123"/>
          <exon e_start="96262" e_stop="96339"/>
          <exon e_start="96818" e_stop="97480"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGAAGAGCAAGCACTAGGGTTTTTTGTGGTGCATTCCTATATTTATTGTCTCCACTTTCATTCCCCAAAATTTCTTTTTATTTGAGCTTCATAATTGCCGCAATTAGGCGTTAGTTTCTCCATTATCACACAAACCGTCAATGGCGGGTGACAACGGAAACAAGCAGAATGGAACTTCTTTTGATCTCAATGACTTCACCATCATCAAAGAAGGAGATGCTGAGATTCTTATGCATGCCAAAAATGAAGTTTTCTACAACAATTCCCAGGTCCTTCTTTTTTCTTTTTTTTTCAGATTCTTATGCTTCATATGAAAGTGCTTATCTAGTTACCTATTTGCCTAAGCCTTACTGTAAGAATTAACTGGACAAGTTATCAAAAGAGTTTTTATTGCGACAAGACATGTGTTCAATTACAAATTAGTATATAGAAATTAAGGAAAAAATTCATTCAGGGTACTTCTAATGTAGCTATGCTGGTGGAATGGCTAATGCGTAGAATTTTTCCATCTGTCTATTTAGTCTGCCAATTGACTGATCTGCTATAGCTCTGTTGTGCTAATATTGCATCTACCAAGGTAGTCTTGTTAGCTATTGAATAATGGGTGAGTTTAACTAGATGATTTTAAGGAATAGAGACAGGGTGTGTGATCTTGGCTAGATACTTTGGGACAAACTTAGATACCACATGCACACAAGGAAGAGGGATAAGGATTAATTCTGCTCGAGTGTTCTCTTATTGTGAACCAACCTATTATATGTCGTTTTCGGTCAAAGTTTTTGTAAGTTCTACAATTTCTAGAATTTGCAATGTTTTGAATGTAGGTGCTTCTTGAATTATAGTTCTTGTAACGTGTGTGAGAGATAGACAGAACAACATTGCCAAAAGTGAAGAGTGTAGAAAAACAGTAAGGTCAAGCTCTACTCGGACTTTAACAGAAAGCACTATTGAAGTGCAATCTTTGGCGAAAAATCCTTAGATGAGGGAAAAAATTAAAAAGTTGGATGTAACTATGTTTATTATAAGATTAATCCAACATATCTATTTACAAACAATTGTGTAGATAATGAAATTGAAAAAAAAAAAACACTGTTCGTAGGGGTATTTACCAGGACGAACAAATAAATGAGCCCAAGATCAGAAGTGATATTGGATACCAATCACATTTGGGGAATGTCTCTGTATCGTATTCGTCTAGAGTGGAGCTTCTTAGCTGCTTGACTATCTCTCACGGGAACCCCAGACTCCACTGCCAAGGTGAATGCATAAACAAAAAAAGTCGTTTTCATTATGGTTTTACAGACGAAAATTACTTAGTATGTTCGTAAGCCAAGAGGTCAACAAGTCAAGTTTAACTACAATTACTTGAATGGCTTTTGGATAACATCCTTTTTCAAAATGTCATTTCTTTATCAAAATGTATCCTTCTTCGGCTCTGTGTGGCTTCAACTGTCAACATATTTTAGTTAATGATACACTAATTATTACTACAAACCTTGAGAAAATATTACGACAAAGGACGAATAAAAATACCGAGTTTGATTCAAAATGTTCATAATTCATCTCTTCATGAAGAATTACCAAACCATTTGATCCTTTGCTCAACTCTATGTCGCATCTGATTCTGACAGATGTAATTGCTTAAAGTCAACCTCTTTTTTCTTATTATTTTTTTCGGTTAACTTTCTTCTCGGTGAAAAAGAGGTAGTTGGGAACTATATTACATTTACTCATTTATTGGTGAAATCAGGTTTTATCTACCGTGGTGTGATTAAGTGTCCAACATAGGTACATTCTGTTTTAGTAATTTTCTGGAGGACTAAAAAGGATCTTGCAAATGTCATTCTTGCCACATGTCTACATCTCCATGTAACATGGGCTCAGAATGTAACTAGTACCTTCTTTTTAGGATAAACGGAGTAGTAGACATTTCCTTTGTTTTTGACTTTGTGACAGACTGACAGCTCAATTCATGGTAACTTACTCATGCAGGAATTTCCACCTAGTAAATATTTAGGACAGGGTAATTTAGCCCTTTTAAGATGACTATTGGCAACTTGTACGCAAATATCTAGTCCTCGATGGTCTTGGCATGCCACCCTGAACAATTCTTGCTTGTATGGTACTTTGTGGTTTATTAATAGCATTCAAAGTTACATCCCTTTATTCTCTATTCTATGTGGTAACATTTAAGGGCAGTGGTAGCCACCTTATTTTAGCTCATCAAAAACTACCTGCAACAGGTGAATAATAGAGACATGTCTATAGCTGTTTTGAGGACATTTATATCACAACGAAAGCTAGAACATGACGCAATGTTAGCTAGACGAACCAAGGCTGGAAATAAGGCACCTAATGCTAAAGTGGAAAACCCAGGTGATTCAGTGCAGCATAATGGTGAATCCACTGATGGATCGGAAGTCTTGAAAGACGCATCCCATGGTGAATCATCTAGCATTCCAGTGGAACAGAATAAAAATCTGCGGGGAAAAGGCCGAGAAGAACTAAAGCCTCCACGAGTTCTCGAGGTATATTGGCCTGTTTTGTTGATTATTAAACGCTTATCAAAAATGAGGTTGTTGCTGTGGTTGACCAACATTTTTTCTTTCAATGTGACTTAATAGGCTCTCTCAGCTTCTGGATTGAGGGCTTTAAGGTATGCTCGTGAAGTAGAAGGAATTAGCCAGGTCGTGGCCCTTGACAATGACAAAGGTAATTCTATCTCAGTTTAGGGGGTGCTGCATAAAATGTCTAGCTGTTACGACACTAACCTTCACTGCCAACCATGGTAAAAGAAAATGAAATGCATCTCTCTGGTCAAGAGATCACTGAGCAGTCACAAAAGTAAGAATGTCTGATGGAATGGATTTGAAACATCTAATCTAAGAGTGTGTTTTATATAAATCATTCAGGTACTGGCTTTAATGTTTAGGTATTAAAACTGTAAATTAATGCGAGGATAGAAGTGAATTCCTTATTGTCGTGATAAATATGAGAAAAACGGTGGCATAATTCAGAGAATTTTATATAAGCTTTAACCAAAAAATTTACTTGTCTTGTTTCAAAATATCTATATAATAACGTGATACAGATATTACTTCTAATGTCCAATCCAGTATTTGAGTAGGTATTCCTTATGTTGCAGCCTCTGTGGAAGCTTGCAGGAGAAACATTAAGTTTAATGGTTCAGTGGCATGCTCTAAGGTGGAATCTCACCTTGCTGATGCAAGGGTTTATATGCTTACCCACCCAAACGAATTTGATGTGGTATGAATATACAATAAATTATCATATTTATATTCTTCTGAACTTTTAATGAATGAAAGTTGTTCTTTGGTGCTGGTTTAGTAAGTCAACCATGTTCAGGATATTTAGTTTGCACATTAAATTTCTTATCCTGGGTTACTTGCGTGTAAAATAATTTTTTGAATATCTATTTCAAGCTGAGCTTTTATTCATACATTTTGGGTTAGTGTTGTTTCAGGTTGATCTCGATCCTTATGGAGCACCTTCTGTGTTCTTAGACTCAGCAGTCCAATCTGTTGCTGATGGAGGAATGTTGATGTGTACTGCAACTGATATGGCAGTCTTATGTGCAGCAAATGGAGAAGTTTGCTATTCCAAGTAACCAAATAATCCCTTCGCTTATGGCGTTAAATAACTTTATTAGTCATTATATCCTGCTTACGTGATCTCATCTGCTACTAGATATGGCTCCTATCCTTTGAGAGGAAAATATTGTCATGAAATGGCTTTGCGGATCCTTCTTGCATCTATTGAGGTACTTCATTTGTGAACTTTTTGTCTATAGTTATTTTAAGCAGCGATTAATGATTTATGGGCTTCTGGCTACATTCATGCAATTTCTTTCTTTACATACTTTTTTGCATTATCCTAAAATTAGCAGCTGCCGTTAGCATTTTGAAGTTTTATCAACAAACTAGAAAAAATCCGTCACTTGTAATTTTAATATAGAAATTAGAAGTTCGTTAACTTCGTTTTGTTGATCGGTTGGTCCCATATCCTAAATAATGGGCGCTTCTTTAATTTTTCTTAGTTCTTAATTTTTTTATTTTATTATTTTATTTCAGAGCCATGCAAATCGATATAAGAGATATATAGTTCCAGTATTATCTGTTCAGATGGATTTCTATGTTCGCGTTTTTGTTCGTATATACACGTAAGTGTTCATCTTTTCTACAATTTAGTCAATTTTTCATAGGTTATCAACTTCCTCTCTATAGATGCGAGTTTTCTGATAATTGCTTGCAGTTCTGCAAGTGATGTGAAAAATACTCCTTTGAAGCTCTCATATGTCTATCAATGCATTGGCTGCGACTCATTTCATCTTCAGACAGTTGGGAGGACAGTCTCAAAGGTATTTCTACATTCACAATCTTTGAATGTCTTGCTCATACAAACTTCTTGTGCTGGATTGACCAGCTTATACTCTAATCTGGAAATCTTGGTAGATGAAAAAATCAGTGCCTAAAGATGCAGATTCATGGTACCTACTAATGTTCTTTATCAGCCCATAGTCTCACAAGTTTTATAATCCAGCACTTATTGTGTGGAAATTCTTCCTTCAACTCTTGTCATATCCTGCCAAAGAAATGCTTGGACCTCAGGTGGACTGTTGGTTCTAATGATATCTGCTCTGGAGGATGGAGTGCCCCTTGTTTAAGATAAAGCTTAGATGCTGCATTTTGTTATCTGAATTCACAGAATTTATTTTGTTATCTCGCTTATTGAAGATCATAACATCAATTTTCCTTGCTTAAAGAAGAAGATAACATCAAGAAAATAGAACATTTAATCAACTTTAGAAGTCTCCCAGTGTTCTGTTACTGCAAGTGTAACACGATCTAAATCCTATTAGCAAGCTTGTTTCTTCAATTGTTCTTTCTTTCATGCTGTTACCAGAATGATGACCTGCTAGGAATTTGGAGGAATCCCTTTTGGATTCTTTTATGTTCAATGGGGAAGTCCCTCCTCTTTGCCTTAGATCATGAGTTAGTTAGTTGTACCTTTTAATCCTTGGTAGAGACTGTTTTAATACATATTTTCAAATATGGCCAGTTATATGTTTTATTTTTCTGCTTATCTAGGATAAGAGTGTCCGATGCCTCCCTGGATTTGGCCCTGCAGTTCCTCAAGAGTGTAGTGATTGTGGTAAGAAATTCAACATGGGTGGACCCATATGGTCTGCCCCCATTCATGATCAAGAATGGGTAGCTGCCATGCTTGCAAATGTGAAATCAATGAAGGAACGCTATCCTGCTTATGAGCGGATCTCTGCTGTATTGACAACTATATCAGAGGTGTGGTTTGTCTTAATATTTATAGTATGCCTCTGTCCATAAGGCTGTTTCGTTCTTTATTCCTTTTAAATATATCCAGAATATGTTACATACTTTAAAGAAATGAAAACTACTTGAAATCATTAAAGTAACAATTACATCCTTTTTCACTTGTTGCTGATTTAGTACTAAACTCTTTTCCTATGAGAGGCACATAAACCTTTTCTTGATGTTCTTTCGGGGATAAGGAGCAAACAATCTTCTGATCACATGTTATTCAATTGTCCTTTCCTGTTGAATGTAATTCTGCACAGAATCAGGAGATTGAGTTGGCGTTCAAATCCCTAGTATTGTAACGTCTTTTCTTTTCGTTTTGGTATGACAGTTGTGTTCCAATTGTTGAAGAAATATTGCATAATAGTGAAGAAGGTATTTAACGCAATTAGACATCGTAAATTTGTCAATAGGACTTAACCTGCTCTAATGACCACAAATGTGAAGGTTGATCTTGTAATGGGGCTTCGAATTTGTTGAAGGAAAATATAAATTCAGTTAGGAATGCCAGTCCTTCAATCCACTCACAGTTCTACATTGATGAATTTGACAAGTAATGGCATGACTTTTACTGCTGGCACAGCAGCGCAATTTTTTTGGGGGGCAAAGAAACTTTTGTCCTTCACTCGTTATTTGGAGACATTTGTTATTCACTGCAGATCCTATTGATGAGAAATAGTTCAATCAGTTATTTATTCAGTGCAGATCATATTGACGAGGAACAGTTTTATCGGTTATTTTTGGTGGATGTTTTCTAAATTCTGATCCAAGAGTGTGCTTTTGCAGGAACTACCTGATATTCCTCTGTTTCTGAGTTTGCACAATCTCTGTGCAACACTAAAATGCACTTCTCCCTCGGCAGTAATATTTCGCTCTGCTGTGATCAACGCAGGATACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGATGTGCGAACTCGATATTTTACACGACTCTCTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTAACGTTGGCTTGCCACGCATTACTTGACTGTAAAACTCTCACTCTTACCGAACTTGGCCGTAACCTGCCAACCAAAGCGAGAACAAAACATAACATCAAACGAATCGACCGATTGTTAGGTAATCGTCACCTCCACAAAGAGCGACTCGCTGTATACCGTTGGCATGCTAGCTTTATCTGTTCGGGCAATACGATGCCCATTGTACTTGTTGACTGGTCTGATATTCGTGAGCAAAAACGACTTATGGTATTGCGAGCTTCAGTCGCACTACACGGTCGTTCTGTTACTCTTTATGAGAAAGCGTTCCCGCTTTCAGAGCAATGTTCAAAGAAAGCTCATGACCAATTTCTAGCCGACCTTGCGAGCATTCTACCGAGTAACACCACACCGCTCATTGTCAGTGATGCTGGCTTTAAAGTGCCATGGTATAAATCCGTTGAGAAGCTGGGTTGGTACTGGTTAAGTCGAGTAAGAGGAAAAGTACAATATGCAGACCTAGGAGCGGAAAACTGGAAACCTATCAGCAACTTACATGATATGTCATCTAGTCACTCAAAGACTTTAGGCTATAAGAGGCTGACTAAAAGCAATCCAATCTCATGCCAAATTCTATTGTATAAATCTCGCTCTAAAGGCCGAAAAAATCAGCGCTCGACACGGACTCATTGTCACCACCCGTCACCTAAAATCTACTCAGCGTCGGCAAAGGAGCCATGGGTTCTAGCAACTAACTTACCTGTTGAAATTCGAACACCCAAACAACTTGTTAATATCTATTCGAAGCGAATGCAGATTGAAGAAACCTTCCGAGACTTGAAAAGTCCTGCCTACGGACTAGGCCTACGCCATAGCCGAACGAGCAGCTCAGAGCGTTTTGATATCATGCTGCTAATCGCCCTGATGCTTCAACTAACATGTTGGCTTGCGGGCGTTCATGCTCAGAAACAAGGTTGGGACAAGCACTTCCAGGCTAACACAGTCAGAAATCGAAACGTACTCTCAACAGTTCGCTTAGGCATGGAAGTTTTGCGGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGCGCAGGATATCGCATATCAGGGACTCATGTGAATCCTTTGGGGTTGAAAACAGATGCTCCTATGAATGTCATTTGGGATATCATGCGTTGCTGGGTAAGTTTTAATCATTTGCTTGTTTTTGGCAGTTCTTGCTTGATATTCTTTGTATTAGCTTACGCCTTTGCTTGTTTCATATTTTGAAAATAAGACATCCTTCTTCTACCATCTGAGCTGATAATGTTCTATTTGCAGGTCAGAAATCATCCTGTGAAAGCACAACCATCTGACCAGTCTGGAAGTGTGATTCTTGCTAAGGAGCCTGTTCTGCAGGTGAACTTTAACCCTCTGGAAGTGATATTATTTTACCGCATCATTGTCATATGGCATAAAGGATACTTCTTGGTCCAAACTATATTGAATTTATACATATAAAGGTGTAAAAAAAAAGGACAATATTCCTTTTTTAATAAAGGACAAAATATGAATGTGAGATTCTGGTCCATGTTCTTAATAATTCATGCACCCGTCTCCTTGACTTCCAATATCTGGGAATCATTTTATGTATATGATATCACCATATGTAACTGGAGACTTGGTTCTGGTTCTGCAAATCCATCTTTTGCACTAGTCACAATAACTTTTGAAAAAACTAAATTTGCCTAGACTCCTCGTTTCACTGAGGTCTGTGATTTTGAAGCAACACACACGTCCGTCATGAAAAAACTAGCTTTTGTACACATACAAGTTGATGACATGTGTTTTCAATCAAGAATACAGTCTTTTAATTCTCATATCTGGAATATTACAGGCTAATTTTGCTCGGGCTGTTGCATCCCTTAGCCAGGCACAAGCCAAGAAGGTTGCGCGTTTCCTCCCTAATCCTGAGAGGAATTGGGGTCCAAAACTAAGGGCAGGCCGGCAGATCACCAGTAAGCATGTGTCTCTTTTGGGTCCTAAAGCATTGAATGCAATTAGCAACCATGGGGATGGCGAGGGTAGCAACAATGAGAACGGCGATGTCAGCAACCATGAGAATGGCGATGGTAGCAACCATGAGAATGGTAATGGTAGCAACCATGAGGATGTCGAGGAGCCTGCAGCCAAGCGTAAGAAGACCGAAGAATCTGATTCATAACTTATATATCTTGGCCAAGTGTCTGCAGTTTTTATCCCATCATAATCCATCTCTTCTGCTGCATTTTCTTGCAGAGTGAGATCCATCTTCTTTCTGATAACTGTGAAAACGTCTATCGATAATGGGGAGGATTTCATCTTGTTTATCTCAAGTATACTTTTTAATTTTTAAAGGTATTTTAGGCTATTTATATTTATTTTGTTTGTCCCTTTTTTCCTTCATTTCAATCTTAATTCCAGTGCTGTATTAAATTTTGTTTTTCATTTTCATTTATCAGAAAACTACTCTGTAACATGGCTTGCGTTGTCTATTTGATCTTTTATGTCGACGAACATT</genome_strand>
        <mrna_strand>GCCGAAGAGCAAGCACTAGGGTTTTTTGTGGTGCATTCCTATATTTATTGTCTCCACTTTCATTCCCCAAAATTTCTTTTTATTTGAGCTTCATAATTGCCGCAATTAGGCGTTAGTTTCTCCATTATCACACAAACCGTCAATGGCGGGTGACAACGGAAACAAGCAGAATGGAACTTCTTTTGATCTCAATGACTTCACCATCATCAAAGAAGGAGATGCTGAGATTCTTATGCATGCCAAAAATGAAGTTTTCTACAACAATTCCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATAATAGAGACATGTCTATAGCTGTTTTGAGGACATTTATATCACAACGAAAGCTAGAACATGACGCAATGTTAGCTAGACGAACCAAGGCTGGAAATAAGGCACCTAATGCTAAAGTGGAAAACCCAGGTGATTCAGTGCAGCATAATGGTGAATCCACTGATGGATCGGAAGTCTTGAAAGACGCATCCCATGGTGAATCATCTAGCATTCCAGTGGAACAGAATAAAAATCTGCGGGGAAAAGGCCGAGAAGAACTAAAGCCTCCACGAGTTCTCGAG................................................................................................GCTCTCTCAGCTTCTGGATTGAGGGCTTTAAGGTATGCTCGTGAAGTAGAAGGAATTAGCCAGGTCGTGGCCCTTGACAATGACAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCTGTGGAAGCTTGCAGGAGAAACATTAAGTTTAATGGTTCAGTGGCATGCTCTAAGGTGGAATCTCACCTTGCTGATGCAAGGGTTTATATGCTTACCCACCCAAACGAATTTGATGTG.........................................................................................................................................................................................................................GTTGATCTCGATCCTTATGGAGCACCTTCTGTGTTCTTAGACTCAGCAGTCCAATCTGTTGCTGATGGAGGAATGTTGATGTGTACTGCAACTGATATGGCAGTCTTATGTGCAGCAAATGGAGAAGTTTGCTATTCCAA....................................................................................ATATGGCTCCTATCCTTTGAGAGGAAAATATTGTCATGAAATGGCTTTGCGGATCCTTCTTGCATCTATTGAG......................................................................................................................................................................................................................................................................................................................AGCCATGCAAATCGATATAAGAGATATATAGTTCCAGTATTATCTGTTCAGATGGATTTCTATGTTCGCGTTTTTGTTCGTATATACAC............................................................................................TTCTGCAAGTGATGTGAAAAATACTCCTTTGAAGCTCTCATATGTCTATCAATGCATTGGCTGCGACTCATTTCATCTTCAGACAGTTGGGAGGACAGTCTCAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAGAGTGTCCGATGCCTCCCTGGATTTGGCCCTGCAGTTCCTCAAGAGTGTAGTGATTGTGGTAAGAAATTCAACATGGGTGGACCCATATGGTCTGCCCCCATTCATGATCAAGAATGGGTAGCTGCCATGCTTGCAAATGTGAAATCAATGAAGGAACGCTATCCTGCTTATGAGCGGATCTCTGCTGTATTGACAACTATATCAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTACCTGATATTCCTCTGTTTCTGAGTTTGCACAATCTCTGTGCAACACTAAAATGCACTTCTCCCTCGGCAGTAATATTTCGCTCTGCTGTGATCAACGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATCGCATATCAGGGACTCATGTGAATCCTTTGGGGTTGAAAACAGATGCTCCTATGAATGTCATTTGGGATATCATGCGTTGCTGG..........................................................................................................................................GTCAGAAATCATCCTGTGAAAGCACAACCATCTGACCAGTCTGGAAGTGTGATTCTTGCTAAGGAGCCTGTTCTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAATTTTGCTCGGGCTGTTGCATCCCTTAGCCAGGCACAAGCCAAGAAGGTTGCGCGTTTCCTCCCTAATCCTGAGAGGAATTGGGGTCCAAAACTAAGGGCAGGCCGGCAGATCACCAGTAAGCATGTGTCTCTTTTGGGTCCTAAAGCATTGAATGCAATTAGCAACCATGGGGATGGCGAGGGTAGCAACAATGAGAACGGCGATGTCAGCAACCATGAGAATGGCGATGGTAGCAACCATGAGAATGGTAATGGTAGCAACCATGAGGATGTCGAGGAGCCTGCAGCCAAGCGTAAGAAGACCGAAGAATCTGATTCATAACTTATATATCTTGGCCAAGTGTCTGCAGTTTTTATCCCATCATAATCCATCTCTTCTGCTGCATTTTCTTGCAGAGTGAGATCCATCTTCTTTCTGATAACTGTGAAAACGTCTATCGATAATGGGGAGGATTTCATCTTGTTTATCTCAAGTATACTTTTTAATTTTTAAAGGTATTTTAGGCTATTTATATTTATTTTGTTTGTCCCTTTTTTCCTTCATTTCAATCTTAATTCCAGTGCTGTATTAAATTTTGTTTTTCATTTTCATTTATCAGAAAACTACTCTGTAACATGGCTTGCGTTGTCTATTTGATCTTTTATGTCGACGAACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U589418" ref_strand="+" ref_description="SGN-U589418 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|147815608|emb|CAN65976.1| (e_value=3e-74) hypothetical; (*ATH) AT3G02320.1 (e_value=2e-64)  Symbol: None | similar to N2,N2-dimethylguanosine tRNA methyltransferase family protein [Arabidopsis thaliana] (TAIR:At5g15810.1); similar to putative N2,N2-dimethylguanosine tRNA methyltransferase [Oryza sativa (japonica cultivar-group)] (GB:AAT752... ; (*SWP) sp|Q9SRU7|TRM2_ARATH (e_value=2e-63) Probable N(2),N(2)-dimethylguanosine tRNA methyltransferase OS=Arabidopsis thaliana GN=At3g02320; ">
      <seq>gcacaaatgtgaaggttgatcttgtaatggggcttcgaatttgttgaaggaaaatataaattcagttaggaatgccagtccttcaatccactcacagttctacattgatgaatttgacaagtaatggcatgacttttactgctggcacagcagcgcaatttttttggggggcaaagaaacttttgtccttcactcgttatttggagacatttgttattcactgcagatcctattgatgagaaatagttcaatcagttatttattcagtgcagatcatattgacgaggaacagttttatcggttatttttggtggatgttttctaaattctgatccaagagtgtgcttttgcaggaactacctgatattcctctgtttctgagtttgcacaatctctgtgcaacactaaaatgcacttctccctcggcagtaatatttcgctctgctgtgatcaacgcaggatatcgcatatcagggactcatgtgaatcctttggggttgaaaacagatgctcctatgaatgtcatttgggatatcatgcgttgctgggtcagaaatcatcctgtgaaagcacaaccatctgaccagtctggaagtgtgattcttgctaaggagcctgttctgcaggctaattttgctcgggctgttgcatcccttagccaggcacaagccaagaaggttgcgcgtttcctccctaatcctgagaggaattggggtccaaaactaagggcaggccggcagatcaccagtaagcatgtgtctcttttgggtcctaaagcattgaatgcaattagcaaccatggggatggcgagggtaacaacaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="+" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="93939" stop="97316"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94238" g_stop="94696" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="459" r_length="459" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94697" i_stop="96034" i_length="1338">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96035" g_stop="96123" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="548" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96124" i_stop="96261" i_length="138">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96262" g_stop="96339" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="626" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96340" i_stop="96817" i_length="478">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96818" g_stop="97016" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="825" r_length="199" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="+" ref_id="SGN-U589418" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>825</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U589418" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94238" e_stop="94696"/>
          <exon e_start="96035" e_stop="96123"/>
          <exon e_start="96262" e_stop="96339"/>
          <exon e_start="96818" e_stop="97016"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACAAATGTGAAGGTTGATCTTGTAATGGGGCTTCGAATTTGTTGAAGGAAAATATAAATTCAGTTAGGAATGCCAGTCCTTCAATCCACTCACAGTTCTACATTGATGAATTTGACAAGTAATGGCATGACTTTTACTGCTGGCACAGCAGCGCAATTTTTTTGGGGGGCAAAGAAACTTTTGTCCTTCACTCGTTATTTGGAGACATTTGTTATTCACTGCAGATCCTATTGATGAGAAATAGTTCAATCAGTTATTTATTCAGTGCAGATCATATTGACGAGGAACAGTTTTATCGGTTATTTTTGGTGGATGTTTTCTAAATTCTGATCCAAGAGTGTGCTTTTGCAGGAACTACCTGATATTCCTCTGTTTCTGAGTTTGCACAATCTCTGTGCAACACTAAAATGCACTTCTCCCTCGGCAGTAATATTTCGCTCTGCTGTGATCAACGCAGGATACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGATGTGCGAACTCGATATTTTACACGACTCTCTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTAACGTTGGCTTGCCACGCATTACTTGACTGTAAAACTCTCACTCTTACCGAACTTGGCCGTAACCTGCCAACCAAAGCGAGAACAAAACATAACATCAAACGAATCGACCGATTGTTAGGTAATCGTCACCTCCACAAAGAGCGACTCGCTGTATACCGTTGGCATGCTAGCTTTATCTGTTCGGGCAATACGATGCCCATTGTACTTGTTGACTGGTCTGATATTCGTGAGCAAAAACGACTTATGGTATTGCGAGCTTCAGTCGCACTACACGGTCGTTCTGTTACTCTTTATGAGAAAGCGTTCCCGCTTTCAGAGCAATGTTCAAAGAAAGCTCATGACCAATTTCTAGCCGACCTTGCGAGCATTCTACCGAGTAACACCACACCGCTCATTGTCAGTGATGCTGGCTTTAAAGTGCCATGGTATAAATCCGTTGAGAAGCTGGGTTGGTACTGGTTAAGTCGAGTAAGAGGAAAAGTACAATATGCAGACCTAGGAGCGGAAAACTGGAAACCTATCAGCAACTTACATGATATGTCATCTAGTCACTCAAAGACTTTAGGCTATAAGAGGCTGACTAAAAGCAATCCAATCTCATGCCAAATTCTATTGTATAAATCTCGCTCTAAAGGCCGAAAAAATCAGCGCTCGACACGGACTCATTGTCACCACCCGTCACCTAAAATCTACTCAGCGTCGGCAAAGGAGCCATGGGTTCTAGCAACTAACTTACCTGTTGAAATTCGAACACCCAAACAACTTGTTAATATCTATTCGAAGCGAATGCAGATTGAAGAAACCTTCCGAGACTTGAAAAGTCCTGCCTACGGACTAGGCCTACGCCATAGCCGAACGAGCAGCTCAGAGCGTTTTGATATCATGCTGCTAATCGCCCTGATGCTTCAACTAACATGTTGGCTTGCGGGCGTTCATGCTCAGAAACAAGGTTGGGACAAGCACTTCCAGGCTAACACAGTCAGAAATCGAAACGTACTCTCAACAGTTCGCTTAGGCATGGAAGTTTTGCGGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGCGCAGGATATCGCATATCAGGGACTCATGTGAATCCTTTGGGGTTGAAAACAGATGCTCCTATGAATGTCATTTGGGATATCATGCGTTGCTGGGTAAGTTTTAATCATTTGCTTGTTTTTGGCAGTTCTTGCTTGATATTCTTTGTATTAGCTTACGCCTTTGCTTGTTTCATATTTTGAAAATAAGACATCCTTCTTCTACCATCTGAGCTGATAATGTTCTATTTGCAGGTCAGAAATCATCCTGTGAAAGCACAACCATCTGACCAGTCTGGAAGTGTGATTCTTGCTAAGGAGCCTGTTCTGCAGGTGAACTTTAACCCTCTGGAAGTGATATTATTTTACCGCATCATTGTCATATGGCATAAAGGATACTTCTTGGTCCAAACTATATTGAATTTATACATATAAAGGTGTAAAAAAAAAGGACAATATTCCTTTTTTAATAAAGGACAAAATATGAATGTGAGATTCTGGTCCATGTTCTTAATAATTCATGCACCCGTCTCCTTGACTTCCAATATCTGGGAATCATTTTATGTATATGATATCACCATATGTAACTGGAGACTTGGTTCTGGTTCTGCAAATCCATCTTTTGCACTAGTCACAATAACTTTTGAAAAAACTAAATTTGCCTAGACTCCTCGTTTCACTGAGGTCTGTGATTTTGAAGCAACACACACGTCCGTCATGAAAAAACTAGCTTTTGTACACATACAAGTTGATGACATGTGTTTTCAATCAAGAATACAGTCTTTTAATTCTCATATCTGGAATATTACAGGCTAATTTTGCTCGGGCTGTTGCATCCCTTAGCCAGGCACAAGCCAAGAAGGTTGCGCGTTTCCTCCCTAATCCTGAGAGGAATTGGGGTCCAAAACTAAGGGCAGGCCGGCAGATCACCAGTAAGCATGTGTCTCTTTTGGGTCCTAAAGCATTGAATGCAATTAGCAACCATGGGGATGGCGAGGGTAGCAACAATG</genome_strand>
        <mrna_strand>GCACAAATGTGAAGGTTGATCTTGTAATGGGGCTTCGAATTTGTTGAAGGAAAATATAAATTCAGTTAGGAATGCCAGTCCTTCAATCCACTCACAGTTCTACATTGATGAATTTGACAAGTAATGGCATGACTTTTACTGCTGGCACAGCAGCGCAATTTTTTTGGGGGGCAAAGAAACTTTTGTCCTTCACTCGTTATTTGGAGACATTTGTTATTCACTGCAGATCCTATTGATGAGAAATAGTTCAATCAGTTATTTATTCAGTGCAGATCATATTGACGAGGAACAGTTTTATCGGTTATTTTTGGTGGATGTTTTCTAAATTCTGATCCAAGAGTGTGCTTTTGCAGGAACTACCTGATATTCCTCTGTTTCTGAGTTTGCACAATCTCTGTGCAACACTAAAATGCACTTCTCCCTCGGCAGTAATATTTCGCTCTGCTGTGATCAACGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATCGCATATCAGGGACTCATGTGAATCCTTTGGGGTTGAAAACAGATGCTCCTATGAATGTCATTTGGGATATCATGCGTTGCTGG..........................................................................................................................................GTCAGAAATCATCCTGTGAAAGCACAACCATCTGACCAGTCTGGAAGTGTGATTCTTGCTAAGGAGCCTGTTCTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAATTTTGCTCGGGCTGTTGCATCCCTTAGCCAGGCACAAGCCAAGAAGGTTGCGCGTTTCCTCCCTAATCCTGAGAGGAATTGGGGTCCAAAACTAAGGGCAGGCCGGCAGATCACCAGTAAGCATGTGTCTCTTTTGGGTCCTAAAGCATTGAATGCAATTAGCAACCATGGGGATGGCGAGGGTAACAACAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U600659" ref_strand="+" ref_description="SGN-U600659 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|209947532|ref|YP_002291029.1| (e_value=1e-21) hypothetical; ">
      <seq>ctgatgaatcccctaatgatttttatcaaaatcattaaattaaggtatatacacatcttgtcatatgatcacatggtttcgccaaaaatcaataatcatacaaccaaatgtgctaactccatattttacacgactctctttaccaattctgccccctattacacttaaatcgactcaacagcttatcgttggcttgccacgccttacttgactgtaaaactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="+" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="94401" stop="95223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94701" g_stop="94923" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="+" ref_id="SGN-U600659" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>223</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U600659" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94701" e_stop="94923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGATGTGCGAACTCGATATTTTACACGACTCTCTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTAACGTTGGCTTGCCACGCATTACTTGACTGTAAAACTCT</genome_strand>
        <mrna_strand>CTGATGAATCCCCTAATGATTTTTATCAAAATCATTAAATTAAGGTATATACACATCTTGTCATATGATCACATGGTTTCGCCAAAAATCAATAATCATACAACCAAATGTGCTAACTCCATATTTTACACGACTCTCTTTACCAATTCTGCCCCCTATTACACTTAAATCGACTCAACAGCTTATCGTTGGCTTGCCACGCCTTACTTGACTGTAAAACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U604614" ref_strand="+" ref_description="SGN-U604614 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205155|gb|ABI34274.1| (e_value=3e-45) IS10; ">
      <seq>aatcgtaagattaaggtaaatgacatacttgtcagatgatccaatggatacaccacaaatctataatcagacaacaaatatgtgcgaactcgatattttacacgactctcgttaccgattctgccccgaattacacttaagacgactcaacagcttaacgttggcttgccacgccttacttgactgtaaaactctcactcttaccgaacttggccgtaacctgccaaccaaagcgagaacaaaacataacatcaaacgaatcgaccgattgttaggtaatcgtcacctccacaaagagcgactcgctgtataccgttggcatgctagctttaactgttccggcacaaagacgcccactgtacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="+" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="94453" stop="95392"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94730" g_stop="95092" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="364" r_length="364" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="+" ref_id="SGN-U604614" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U604614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94730" e_stop="95092"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCATTAAGTTAAGGTGGAT-ACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAAC-AAGATGTGCGAACTCGATATTTTACACGACTCTCTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTAACGTTGGCTTGCCACGCATTACTTGACTGTAAAACTCTCACTCTTACCGAACTTGGCCGTAACCTGCCAACCAAAGCGAGAACAAAACATAACATCAAACGAATCGACCGATTGTTAGGTAATCGTCACCTCCACAAAGAGCGACTCGCTGTATACCGTTGGCATGCTAGCTTTATCTGTTCGGGCAATACGATGCCCATTGTACTT</genome_strand>
        <mrna_strand>AATCGTAAGATTAAGGTAAATGACATA-CTTGTCAGATGATCCAATGGATACACCACAAATCTATAATCAGACAACAAATATGTGCGAACTCGATATTTTACACGACTCTCGTTACCGATTCTGCCCCGAATTACACTTAAGACGACTCAACAGCTTAACGTTGGCTTGCCACGCCTTACTTGACTGTAAAACTCTCACTCTTACCGAACTTGGCCGTAACCTGCCAACCAAAGCGAGAACAAAACATAACATCAAACGAATCGACCGATTGTTAGGTAATCGTCACCTCCACAAAGAGCGACTCGCTGTATACCGTTGGCATGCTAGCTTTAACTGTTCCGGCACAAAGACGCCCACTGTACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U604818" ref_strand="+" ref_description="SGN-U604818 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|116267070|gb|ABJ96340.1| (e_value=3e-56) transposase; ">
      <seq>ataatcagacaacacttgtgcaaaatcgatcttttaacctaatctacttttacccttctgccccgatttacacttatcaacgactcaacttcttaacgatggcttgccacgccttacttgactgaataactctcactcttaactaacttggacgtaacctgccaaccatatctatatctaaacataacatcttactaatctaccgattgttacgtaatcgtctcctccacaaagagcgactcgctgtataccgttggcatgctagctttatctgttcgggcaatacgatgcccattgtacttgttgactggtctgatatccgtgagcaaaaacggcttatggtattgcgagcttcagtcgcactacacggtcgttctgttactctttatgagaaagcgttcccgctttcagagcaatgttcaaagaaagctcatgaccaatttctagccgaccttgcgagcattctaccgagtaacaccacaccgctcattgtcagtgatgctggctttaaaagtgccatggtataaatccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="+" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="94569" stop="95620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94792" g_stop="95321" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="532" r_length="532" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="+" ref_id="SGN-U604818" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U604818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94792" e_stop="95321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATCAGACAACAAGATGTGCGAACTCGATATTTTACACGACTCT-CTTTACCAATTCTGCCCCGAATTACACTTA-AAACGACTCAACAGCTTAACGTTGGCTTGCCACGCATTACTTGACTGTAAAACTCTCACTCTTACCGAACTTGGCCGTAACCTGCCAACCAAAGCGAGAACAAAACATAACATCAAACGAATCGACCGATTGTTAGGTAATCGTCACCTCCACAAAGAGCGACTCGCTGTATACCGTTGGCATGCTAGCTTTATCTGTTCGGGCAATACGATGCCCATTGTACTTGTTGACTGGTCTGATATTCGTGAGCAAAAACGACTTATGGTATTGCGAGCTTCAGTCGCACTACACGGTCGTTCTGTTACTCTTTATGAGAAAGCGTTCCCGCTTTCAGAGCAATGTTCAAAGAAAGCTCATGACCAATTTCTAGCCGACCTTGCGAGCATTCTACCGAGTAACACCACACCGCTCATTGTCAGTGATGCTGGCTTT-AAAGTGCCATGGTATAAATCCG</genome_strand>
        <mrna_strand>ATAATCAGACAAC-ACTTGTGCAAAATCGATCTTTTAACCTAATCTACTTTTACCCTTCTGCCCCGATTTACACTTATCAACGACTCAACTTCTTAACGATGGCTTGCCACGCCTTACTTGACTGAATAACTCTCACTCTTAACTAACTTGGACGTAACCTGCCAACCATATCTATATCTAAACATAACATCTTACTAATCTACCGATTGTTACGTAATCGTCTCCTCCACAAAGAGCGACTCGCTGTATACCGTTGGCATGCTAGCTTTATCTGTTCGGGCAATACGATGCCCATTGTACTTGTTGACTGGTCTGATATCCGTGAGCAAAAACGGCTTATGGTATTGCGAGCTTCAGTCGCACTACACGGTCGTTCTGTTACTCTTTATGAGAAAGCGTTCCCGCTTTCAGAGCAATGTTCAAAGAAAGCTCATGACCAATTTCTAGCCGACCTTGCGAGCATTCTACCGAGTAACACCACACCGCTCATTGTCAGTGATGCTGGCTTTAAAAGTGCCATGGTATAAATCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U589393" ref_strand="+" ref_description="SGN-U589393 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|151940600|gb|EDN59046.1| (e_value=9e-71) hypothetical; ">
      <seq>ggttaccactggaagcgcttgacccaaccttgttgtatgcatcatgaacgccctcttgctcatcatgttagttgaagcatcacggcgagttaggcatcgatgatatcaaaacgctctgagctgctcgttcagttaatggcgtatgccatagtccgtaggcaggacttttgaagatctcggaaggtttcttcaatctgcattcgcctctgaatagatattaacaagttgtttgggtgttcgaatttcaacaggtaagttagttgctagaacccatggctcctttgccgacgctgagtagattttaggtgacgggtggtgacaatgagtccgtgtcgagcgctgattttttcggcctttagagcgagatttatacaatagaatttggcatgagattggattgcttttagtcagcctcttatagcctaaagtctttgagtgactagatgacatatcatgtaagttgctgataggtttccagttttccgctcctaggtctgcatattgtacttttcctcttactcgacttaaccagtaccaacccagcttctcaacgggattataccatggcactttaaagccagcatcactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="96160" stop="94983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95855" g_stop="95283" g_length="573"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="590" r_length="583" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-U589393" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U589393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95855" e_stop="95283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGGAAGTGCTTGTCCCAACCTTGTT-TCTG-AGCATGAACGCCCGCAAGC-CAACATGTTAGTTGAAGCATCAGGGCGA-TTA-GCAGC-ATGATATCAAAACGCTCTGAGCTGCTCGTTCGGCT-ATGGCGTAGGCC-TAGTCCGTAGGCAGGACTTTTCAAG-TCTCGGAAGGTTTCTTCAATCTGCATTCGCTTC-GAATAGATATTAACAAGTTGTTTGGGTGTTCGAATTTCAACAGGTAAGTTAGTTGCTAGAACCCATGGCTCCTTTGCCGACGCTGAGTAGATTTTAGGTGACGGGTGGTGACAATGAGTCCGTGTCGAGCGCTGATTTTTTCGGCCTTTAGAGCGAGATTTATACAATAGAATTTGGCATGAGATTGGATTGCTTTTAGTCAGCCTCTTATAGCCTAAAGTCTTTGAGTGACTAGATGACATATCATGTAAGTTGCTGATAGGTTTCCAGTTTTCCGCTCCTAGGTCTGCATATTGTACTTTTCCTCTTACTCGACTTAACCAGTACCAACCCAGCTTCTCAACGGATTTATACCATGGCACTTTAAAGCCAGCATCACTGA</genome_strand>
        <mrna_strand>ACTGGAAGCGCTTGACCCAACCTTGTTGTATGCATCATGAACGCCCTCTTGCTCATCATGTTAGTTGAAGCATCACGGCGAGTTAGGCATCGATGATATCAAAACGCTCTGAGCTGCTCGTTCAGTTAATGGCGTATGCCATAGTCCGTAGGCAGGACTTTTGAAGATCTCGGAAGGTTTCTTCAATCTGCATTCGCCTCTGAATAGATATTAACAAGTTGTTTGGGTGTTCGAATTTCAACAGGTAAGTTAGTTGCTAGAACCCATGGCTCCTTTGCCGACGCTGAGTAGATTTTAGGTGACGGGTGGTGACAATGAGTCCGTGTCGAGCGCTGATTTTTTCGGCCTTTAGAGCGAGATTTATACAATAGAATTTGGCATGAGATTGGATTGCTTTTAGTCAGCCTCTTATAGCCTAAAGTCTTTGAGTGACTAGATGACATATCATGTAAGTTGCTGATAGGTTTCCAGTTTTCCGCTCCTAGGTCTGCATATTGTACTTTTCCTCTTACTCGACTTAACCAGTACCAACCCAGCTTCTCAACGGGATTATACCATGGCACTTTAAAGCCAGCATCACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U589391" ref_strand="+" ref_description="SGN-U589391 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|218694563|ref|YP_002402230.1| (e_value=1e-106) transposase,; ">
      <seq>atcctgcacagcgctaatacatcgcctcatagtttccccaatatctacccatgtgtgaatatattttgagtaagcagggttgcagccacgaatgagtcttcccttgttattgtgtagccagaatgccgcaaaacttccatgcctaatccaactgttgagagtacgtttcaatttctgactgtgttagcctggaaatgcttgtcccagccttgtttctgaccgtgaacgcgccgccagccaacatgttagttgaagacatgcagggcgattagcaacatgatatcaaaacgctctgagctgctcgttcggctatggcgtaagcctagtccgtatgcaggacttttcaagtctcggaaggtttcttcaatctgcattcgcttccaatagatattaacaagttgtttgggtgttcgaatttcaacaggtaagttaattgctagaatccatggctcctttgccaacgctgagtagattttaggtgacgggtggtgacaatgagtccgtgtcgagcgctgattttttcggcctttacagcgagatttatacaataaaatttggcatgagattggattgcttttagtcagcctcttatagcctaaagtctttgagtgactaaatgacatatcatgtaagttgctgataggtttccagttttccgctcctaggtctgcatattgtacttttcctcctactcgactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="96334" stop="95047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96022" g_stop="95347" g_length="676"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="699" r_length="679" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-U589391" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U589391" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96022" e_stop="95347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCCCTCATAATTTCCCCAAAGCGTAACCATGTGTGAATAAATTTTGAGCTAGTAGGGTTGCAGCCACGAGTAAGTCTTCCCTTGTTATTGTGTAGCCAGAATGCCGCAAAACTTCCATGCCTAAGCGAACTGTTGAGAGTACGTTTCGATTTCTGACTGTGTTAGCCTGGAAGTGCTTGTCCCAACCTTGTTTCTGAGCATGAACGC-CCGCAAGCCAACATGTTAGTTGAAG-CAT-CAGGGCGATTAGCAGCATGATATCAAAACGCTCTGAGCTGCTCGTTCGGCTATGGCGTAGGCCTAGTCCGTAGGCAGGACTTTTCAAGTCTCGGAAGGTTTCTTCAATCTGCATTCGCTTCGAATAGATATTAACAAGTTGTTTGGGTGTTCGAATTTCAACAGGTAAGTTAGTTGCTAGAACCCATGGCTCCTTTGCCGACGCTGAGTAGATTTTAGGTGACGGGTGGTGACAATGAGTCCGTGTCGAGCGCTGATTTTTTCGGCCTTTAGAGCGAGATTTATACAATAGAATTTGGCATGAGATTGGATTGCTTTTAGTCAGCCTCTTATAGCCTAAAGTCTTTGAGTGACTAGATGACATATCATGTAAGTTGCTGATAGGTTTCCAGTTTTCCGCTCCTAGGTCTGCATATTGTACTTTTCCTCTTACTCGACTT</genome_strand>
        <mrna_strand>ATCGCCTCATAGTTTCCCCAATATCTACCCATGTGTGAATATATTTTGAGTAAGCAGGGTTGCAGCCACGAATGAGTCTTCCCTTGTTATTGTGTAGCCAGAATGCCGCAAAACTTCCATGCCTAATCCAACTGTTGAGAGTACGTTTCAATTTCTGACTGTGTTAGCCTGGAAATGCTTGTCCCAGCCTTGTTTCTGACCGTGAACGCGCCGCCAGCCAACATGTTAGTTGAAGACATGCAGGGCGATTAGCAACATGATATCAAAACGCTCTGAGCTGCTCGTTCGGCTATGGCGTAAGCCTAGTCCGTATGCAGGACTTTTCAAGTCTCGGAAGGTTTCTTCAATCTGCATTCGCTTCCAATAGATATTAACAAGTTGTTTGGGTGTTCGAATTTCAACAGGTAAGTTAATTGCTAGAATCCATGGCTCCTTTGCCAACGCTGAGTAGATTTTAGGTGACGGGTGGTGACAATGAGTCCGTGTCGAGCGCTGATTTTTTCGGCCTTTACAGCGAGATTTATACAATAAAATTTGGCATGAGATTGGATTGCTTTTAGTCAGCCTCTTATAGCCTAAAGTCTTTGAGTGACTAAATGACATATCATGTAAGTTGCTGATAGGTTTCCAGTTTTCCGCTCCTAGGTCTGCATATTGTACTTTTCCTCCTACTCGACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U587322" ref_strand="+" ref_description="SGN-U587322 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157356287|emb|CAO62439.1| (e_value=5e-104) unnamed; (*ATH) AT3G02230.1 (e_value=2e-103) | Symbol: None | reversibly glycosylated polypeptide-1 (RGP1), identical to reversibly glycosylated polypeptide-1 (AtRGP) (Arabidopsis thaliana) GI:2317729 | chr3:415402-417554 FORWARD | Aliases: F14P3.12, F14P3_12; (*SWP) sp|Q9SC19|UPTG1_SOLTU (e_value=4e-104) Alpha-1,4-glucan-protein synthase [UDP-forming] 1 OS=Solanum tuberosum GN=UPTG1; ">
      <seq>ggcaaaatttaaaaagaaaaaaaaaaaaaatctctcgaaatggctactgttcctttgaaagatgagctagacattgtgataccaacgattagaaacttagattttcttgagatgtggaggccatttttcgaacaatatcatttaattattgtgcaagatggtgatccttcaaagactattaaagttcctgatggctttgattatgagctctacaatcgtaatgatattaacaaaattttgggtccgagggcttcttgtatttcgttcaaagactcggcttgtcgttgctttggttacatggtgtccaagaagaagtatatttacactattgatgatgattgcttcgttgcaaaggacccaagtgggaaagatattaatgcattggaacaacacataaagaatcttctttgtccatcaactccctattttttcaacacactttatgatccatttagagatggtgctgattttgtgcgtggatacccttttagtctacgtgagggtgtttcaactgcagtctctcatggattatggctcaacattcctgattatgatgcacctactcaacttgtcaagcctcttgagaggaatactaggtacgttgatacggtgttgacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0092M23-vGkQx/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0092M23.1" temp_strand="-" temp_description="C02SLe0092M23.1  AC215461.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0092M23 sequenced_by:kribb upload_account_name:korea">
        <position start="99732" stop="98346"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99433" g_stop="99091" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99090" i_stop="98997" i_length="94">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98996" g_stop="98746" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="596" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98745" i_stop="98668" i_length="78">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98667" g_stop="98646" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="618" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0092M23.1" gen_strand="-" ref_id="SGN-U587322" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0092M23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U587322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99433" e_stop="99091"/>
          <exon e_start="98996" e_stop="98746"/>
          <exon e_start="98667" e_stop="98646"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAAATTTAAAAAG--AAAAAAAAAAAATCTCTCGAAATGGCTACTGTTCCTTTGAAAGATGAGCTAGACATTGTGATACCAACGATTAGAAACTTAGATTTTCTTGAGATGTGGAGGCCATTTTTCGAACAATATCATTTAATTATTGTGCAAGATGGTGATCCTTCAAAGACTATTAAAGTTCCTGATGGCTTTGATTATGAGCTCTACAATCGTAATGATATTAACAAAATTTTGGGTCCGAGGGCTTCTTGTATTTCGTTCAAAGACTCGGCTTGTCGTTGCTTTGGTTACATGGTGTCCAAGAAGAAGTATATTTACACTATTGATGATGATTGCTTCGTAAGACATCGATCTCCTTATATCATATGGTGTTTGTAGGCTTTTTTTTTTATAGTTTGACATTGTTTGGTTTTTGTGAAAATTGAATTGATAGGTTGCAAAGGACCCAAGTGGGAAAGATATTAATGCATTGGAACAACACATAAAGAATCTTCTTTGTCCATCAACTCCCTATTTTTTCAACACACTTTATGATCCATTTAGAGATGGTGCTGATTTTGTGCGTGGATACCCTTTTAGTCTACGTGAGGGTGTTTCAACTGCAGTCTCTCATGGATTATGGCTCAACATTCCTGATTATGATGCACCTACTCAACTTGTCAAGCCTCTTGAGAGGAATACTAGGTCTCCTCTTTATTAATTTTACTTATATCAGTTACTTTTAGAAATAAAAATTATATATAAAGTTTAAATTCTGAATAGGTACGTTGATACGGTGTTGACG</genome_strand>
        <mrna_strand>GGCAAAATTTAAAAAGAAAAAAAAAAAAAATCTCTCGAAATGGCTACTGTTCCTTTGAAAGATGAGCTAGACATTGTGATACCAACGATTAGAAACTTAGATTTTCTTGAGATGTGGAGGCCATTTTTCGAACAATATCATTTAATTATTGTGCAAGATGGTGATCCTTCAAAGACTATTAAAGTTCCTGATGGCTTTGATTATGAGCTCTACAATCGTAATGATATTAACAAAATTTTGGGTCCGAGGGCTTCTTGTATTTCGTTCAAAGACTCGGCTTGTCGTTGCTTTGGTTACATGGTGTCCAAGAAGAAGTATATTTACACTATTGATGATGATTGCTTC..............................................................................................GTTGCAAAGGACCCAAGTGGGAAAGATATTAATGCATTGGAACAACACATAAAGAATCTTCTTTGTCCATCAACTCCCTATTTTTTCAACACACTTTATGATCCATTTAGAGATGGTGCTGATTTTGTGCGTGGATACCCTTTTAGTCTACGTGAGGGTGTTTCAACTGCAGTCTCTCATGGATTATGGCTCAACATTCCTGATTATGATGCACCTACTCAACTTGTCAAGCCTCTTGAGAGGAATACTAG..............................................................................GTACGTTGATACGGTGTTGACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>19</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="40955" PGL_stop="46416"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40955" e_stop="41059"/>
            <exon e_start="41736" e_stop="42074"/>
            <exon e_start="42840" e_stop="43266"/>
            <exon e_start="43568" e_stop="43677"/>
            <exon e_start="46037" e_stop="46416"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.985" e_score="0.971"/>
          <exon-intron don_prob="0.921" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.948" acc_prob="0.753" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="40955" e_stop="41059" e_length="105"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.985">
            <gDNA_intron_boundary i_start="41060" i_stop="41735" i_length="676"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41736" e_stop="42074" e_length="339"/>
          </exon>
          <intron i_serial="2" don_prob="0.921" acc_prob="0.986">
            <gDNA_intron_boundary i_start="42075" i_stop="42839" i_length="765"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42840" e_stop="43266" e_length="427"/>
          </exon>
          <intron i_serial="3" don_prob="0.948" acc_prob="0.753">
            <gDNA_intron_boundary i_start="43267" i_stop="43567" i_length="301"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="43568" e_stop="43677" e_length="110"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="43678" i_stop="46036" i_length="2359"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="46037" e_stop="46416" e_length="380"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40955" stop="41059"/>
              <exon start="41736" stop="42074"/>
              <exon start="42840" stop="43266"/>
              <exon start="43568" stop="43677"/>
              <exon start="46037" stop="46416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U576741" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTTCATTGTGTAGATAGAAAAAATAAAAAAGAAACCCTTTGACCTCTGAAATTATCTATTTTTATCTTTCTCTCTATTATCCCCGCAATCTCCGCTATTTTCAG : GTGATACACAACAGTTTTTGAAATTTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACGAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATG : TATGCATCATTGTTTCATAGAGGAGAACAACATGCCATTGCTTCATCCACTCAAGGTACAACATCTTTGAGCTCCTCAGCATCCCTTGATAACTCACTATCTGATATGTACCGCTCTCCTCCAAGACCACTTCCTTACGATGCTGATCCAAGATACTTCCGCTTGCAACGTGATGGGCTAGTCTCAAGAAGGGAGAAAGGCTCAAGTCATTCACATGAGGAAACTGAACCACTACGAAGAAGTGATATTGATGATGATTCTGAATCTTTGGGTATGGGCAATAAATGGAAGGAGTCTGTATGTGAAGAAGGATCAAAAGAATATAATTCCAAGTCATTGAAATTCTCAACAGCTAAAACAACTACTGAGTTTACTCAAATTTGTTATTCTTCAGAAGATGAAGATGTCTGCCCGACATGTCTTGAAG : AATATACTGAAGAAAACCCAAAAATAATGACAAAATGCTCTCACCACTTCCACTTGGGTTGCATATATGAGTGGATGGAGAGAAGTGACAACTGTCCAGTATGCGGCAAG : GTGATGCTATTCAACGAGTCGCCATGATCTTTGCTCTTAAAAAGCTTTAGTCGTGGATGAAACCAGAAGGAGATAAGGGCAACAACTAGTAAACCAGAAAAGCTAATCAACGTAAAGTCATTGTGAATATCTGTGCAGCTAAATGTGTGACCATACATCAGTAAAAATGAAATTACTGTTCTCTCTGTTTGGAACTTTCGAGTTCATATTGATCATTTGATGCAACAGAAAACAGTTTCAAAGTACATCATGTAATCTTGTTTTGATTTGATGAGTGATTTCTCCCAGTGTATAGCACATTGTTCCTACTTTCACAAGTTGAATGTTGGCACATTTGTCTGCCAAAATCACTGGATCTGATACTATTTTATATCTGTTCC</gDNA_template>
            <first_frame> C  S  L  C  R  *  K  K  *  K  R  N  P  L  T  S  E  I  I  Y  F  Y  L  S  L  Y  Y  P  R  N  L  R  Y  F  Q  :  V  I  H  N  S  F  *  N  F  F  *  R  S  W  S  *  R  A  S  T  H  S  G  F  P  E  E  R  G  C  P  I  A  F  S  V  S  Y  I  L  T  S  F  A  S  I  T  I  *  S  Q  E  W  R  I  D  N  D  S  R  G  R  F  L  S  Y  E  H  L  F  E  D  I  I  M  G  A  V  C  C  C  L  R  D  E  C  E  D  F  A  N  P  N  S  S  I  Y  R  N  C  L  C  L  R  C  F  V  Q  N  F  L  H  M  :  Y  A  S  L  F  H  R  G  E  Q  H  A  I  A  S  S  T  Q  G  T  T  S  L  S  S  S  A  S  L  D  N  S  L  S  D  M  Y  R  S  P  P  R  P  L  P  Y  D  A  D  P  R  Y  F  R  L  Q  R  D  G  L  V  S  R  R  E  K  G  S  S  H  S  H  E  E  T  E  P  L  R  R  S  D  I  D  D  D  S  E  S  L  G  M  G  N  K  W  K  E  S  V  C  E  E  G  S  K  E  Y  N  S  K  S  L  K  F  S  T  A  K  T  T  T  E  F  T  Q  I  C  Y  S  S  E  D  E  D  V  C  P  T  C  L  E   : E  Y  T  E  E  N  P  K  I  M  T  K  C  S  H  H  F  H  L  G  C  I  Y  E  W  M  E  R  S  D  N  C  P  V  C  G  K  :  V  M  L  F  N  E  S  P  *  S  L  L  L  K  S  F  S  R  G  *  N  Q  K  E  I  R  A  T  T  S  K  P  E  K  L  I  N  V  K  S  L  *  I  S  V  Q  L  N  V  *  P  Y  I  S  K  N  E  I  T  V  L  S  V  W  N  F  R  V  H  I  D  H  L  M  Q  Q  K  T  V  S  K  Y  I  M  *  S  C  F  D  L  M  S  D  F  S  Q  C  I  A  H  C  S  Y  F  H  K  L  N  V  G  T  F  V  C  Q  N  H  W  I  *  Y  Y  F  I  S  V   </first_frame>
            <second_frame>  V  H  C  V  D  R  K  N  K  K  E  T  L  *  P  L  K  L  S  I  F  I  F  L  S  I  I  P  A  I  S  A  I  F  R :   *  Y  T  T  V  F  E  I  F  S  E  G  L  G  H  E  G  H  Q  L  I  Q  G  F  L  K  R  E  G  A  Q  L  H  F  P  *  V  I  F  L  Q  V  L  H  P  *  P  S  N  H  K  N  G  G  L  T  M  I  A  V  E  G  F  *  V  T  N  I  Y  L  K  T  S  S  W  V  Q  F  V  A  A  C  E  M  N  V  K  I  L  P  I  Q  T  A  Q  Y  I  G  T  A  Y  A  F  D  V  L  F  K  T  S  C  I  C :   M  H  H  C  F  I  E  E  N  N  M  P  L  L  H  P  L  K  V  Q  H  L  *  A  P  Q  H  P  L  I  T  H  Y  L  I  C  T  A  L  L  Q  D  H  F  L  T  M  L  I  Q  D  T  S  A  C  N  V  M  G  *  S  Q  E  G  R  K  A  Q  V  I  H  M  R  K  L  N  H  Y  E  E  V  I  L  M  M  I  L  N  L  W  V  W  A  I  N  G  R  S  L  Y  V  K  K  D  Q  K  N  I  I  P  S  H  *  N  S  Q  Q  L  K  Q  L  L  S  L  L  K  F  V  I  L  Q  K  M  K  M  S  A  R  H  V  L  K  :  N  I  L  K  K  T  Q  K  *  *  Q  N  A  L  T  T  S  T  W  V  A  Y  M  S  G  W  R  E  V  T  T  V  Q  Y  A  A  R :   *  C  Y  S  T  S  R  H  D  L  C  S  *  K  A  L  V  V  D  E  T  R  R  R  *  G  Q  Q  L  V  N  Q  K  S  *  S  T  *  S  H  C  E  Y  L  C  S  *  M  C  D  H  T  S  V  K  M  K  L  L  F  S  L  F  G  T  F  E  F  I  L  I  I  *  C  N  R  K  Q  F  Q  S  T  S  C  N  L  V  L  I  *  *  V  I  S  P  S  V  *  H  I  V  P  T  F  T  S  *  M  L  A  H  L  S  A  K  I  T  G  S  D  T  I  L  Y  L  F  </second_frame>
            <third_frame>   F  I  V  *  I  E  K  I  K  K  K  P  F  D  L  *  N  Y  L  F  L  S  F  S  L  L  S  P  Q  S  P  L  F  S   : G  D  T  Q  Q  F  L  K  F  F  L  K  V  L  V  M  K  G  I  N  S  F  R  V  S  *  R  E  R  V  P  N  C  I  F  R  K  L  Y  S  Y  K  F  C  I  H  N  H  L  I  T  R  M  E  D  *  Q  *  *  P  W  K  V  F  E  L  R  T  F  I  *  R  H  H  H  G  C  S  L  L  L  L  A  R  *  M  *  R  F  C  Q  S  K  Q  L  N  I  *  E  L  L  M  P  S  M  F  C  S  K  L  L  A  Y   : V  C  I  I  V  S  *  R  R  T  T  C  H  C  F  I  H  S  R  Y  N  I  F  E  L  L  S  I  P  *  *  L  T  I  *  Y  V  P  L  S  S  K  T  T  S  L  R  C  *  S  K  I  L  P  L  A  T  *  W  A  S  L  K  K  G  E  R  L  K  S  F  T  *  G  N  *  T  T  T  K  K  *  Y  *  *  *  F  *  I  F  G  Y  G  Q  *  M  E  G  V  C  M  *  R  R  I  K  R  I  *  F  Q  V  I  E  I  L  N  S  *  N  N  Y  *  V  Y  S  N  L  L  F  F  R  R  *  R  C  L  P  D  M  S  *  R :   I  Y  *  R  K  P  K  N  N  D  K  M  L  S  P  L  P  L  G  L  H  I  *  V  D  G  E  K  *  Q  L  S  S  M  R  Q   : G  D  A  I  Q  R  V  A  M  I  F  A  L  K  K  L  *  S  W  M  K  P  E  G  D  K  G  N  N  *  *  T  R  K  A  N  Q  R  K  V  I  V  N  I  C  A  A  K  C  V  T  I  H  Q  *  K  *  N  Y  C  S  L  C  L  E  L  S  S  S  Y  *  S  F  D  A  T  E  N  S  F  K  V  H  H  V  I  L  F  *  F  D  E  *  F  L  P  V  Y  S  T  L  F  L  L  S  Q  V  E  C  W  H  I  C  L  P  K  S  L  D  L  I  L  F  Y  I  C  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0092M23.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41883" stop="42074"/>
                    <exon start="42840" stop="43266"/>
                    <exon start="43568" stop="43677"/>
                    <exon start="46037" stop="46063"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>753</number_coding_nucleotides>
                  <number_encoded_amino_acids>251</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SQEWRIDNDSRGRFLSYEHLFEDIIMGAVCCCLRDECEDFANPNSSIYRNCLCLRCFVQNFLHMYASLFHRGEQHAIASSTQGTTSLSSSASLDNSLSDMYRSPPRPLPYDADPRYFRLQRDGLVSRREKGSSHSHEETEPLRRSDIDDDSESLGMGNKWKESVCEEGSKEYNSKSLKFSTAKTTTEFTQICYSSEDEDVCPTCLEEYTEENPKIMTKCSHHFHLGCIYEWMERSDNCPVCGKVMLFNESP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="41090" e_stop="42074"/>
            <exon e_start="42840" e_stop="42894"/>
            <exon e_start="42965" e_stop="43114"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.921" acc_prob="0.986" e_score="0.992"/>
          <exon-intron don_prob="0.974" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="41090" e_stop="42074" e_length="985"/>
          </exon>
          <intron i_serial="1" don_prob="0.921" acc_prob="0.986">
            <gDNA_intron_boundary i_start="42075" i_stop="42839" i_length="765"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42840" e_stop="42894" e_length="55"/>
          </exon>
          <intron i_serial="2" don_prob="0.974" acc_prob="0.000">
            <gDNA_intron_boundary i_start="42895" i_stop="42964" i_length="70"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42965" e_stop="43114" e_length="150"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41090" stop="42074"/>
              <exon start="42840" stop="42894"/>
              <exon start="42965" stop="43114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U576742" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCACTGTATTTTACGCTCACTTTTATCTATCTCCTACTGATTGGAGCTTTAATCGATTGTAAACTGTTATGAACTGAAATGGGTTTCATCGGAATCGGTTGATGCAGAGATTTTCACGGTAAAGTTCTGTTTTTTAGGGATCGATAATGCAATTTCTTGATTTGAATTGTAGAAATCTTGATTTTCTTGATTCTTGATCACTGTTGGTGTTGTTTTGTTGATCATTTTTTGTTTTAATTTTTTCTTGTTTTCGGTTTAGCTGTGTCTTTAACACTGTTGTATGAGAGTTCCCTTTGCTTCTTATTAAAGAAATTAAGATGATGATAACAATTTGAGAATTAAGTTCTCACAAGTGGTGTTTAAGATTAGGAATTAAGAATAATTCCCTGCAAATTTATAGTGTCCATCTATTTATGTTTTTTTATTTTATTGCAATTTGTTGAGTGTTAGGCAGCTGGATTATGCCAAAGAAGCTGTTTATAAATTTGAATTTAATGTGATTTTGCTTGCTCACATATCAAATTTAAACTGTAAGCTTATTTATTTCATTCTTCGGAAGCTGTAATTTTCTTGTGTCACTCGAGGTAGACCATCCATGTATTTCTCCATCAATGCATATATGATAGTTGTTCTTTACTTGTACAGGTGATACACAACAGTTTTTGAAATTTTTTCTGAAGGTCTTGGTCATGAAGGGCATCAACTCATTCAGGGTTTCCTGAAGAGAGAGGGTGCCCAATTGCATTTTCCGTAAGTTATATTCTTACAAGTTTTGCATCCATAACCATCTAATCACAAGAATGGAGGATTGACAATGATAGCCGTGGAAGGTTTTTGAGTTACGAACATTTATTTGAAGACATCATCATGGGTGCAGTTTGTTGCTGCTTGCGAGATGAATGTGAAGATTTTGCCAATCCAAACAGCTCAATATATAGGAACTGCTTATGCCTTCGATGTTTTGTTCAAAACTTCTTGCATATG : TATGCATCATTGTTTCATAGAGGAGAACAACATGCCATTGCTTCATCCACTCAAG : ACCACTTCCTTACGATGCTGATCCAAGATACTTCCGCTTGCAACGTGATGGGCTAGTCTCAAGAAGGGAGAAAGGCTCAAGTCATTCACATGAGGAAACTGAACCACTACGAAGAAGTGATATTGATGATGATTCTGAATCTTTGGGTAT</gDNA_template>
            <first_frame> I  T  V  F  Y  A  H  F  Y  L  S  P  T  D  W  S  F  N  R  L  *  T  V  M  N  *  N  G  F  H  R  N  R  L  M  Q  R  F  S  R  *  S  S  V  F  *  G  S  I  M  Q  F  L  D  L  N  C  R  N  L  D  F  L  D  S  *  S  L  L  V  L  F  C  *  S  F  F  V  L  I  F  S  C  F  R  F  S  C  V  F  N  T  V  V  *  E  F  P  L  L  L  I  K  E  I  K  M  M  I  T  I  *  E  L  S  S  H  K  W  C  L  R  L  G  I  K  N  N  S  L  Q  I  Y  S  V  H  L  F  M  F  F  Y  F  I  A  I  C  *  V  L  G  S  W  I  M  P  K  K  L  F  I  N  L  N  L  M  *  F  C  L  L  T  Y  Q  I  *  T  V  S  L  F  I  S  F  F  G  S  C  N  F  L  V  S  L  E  V  D  H  P  C  I  S  P  S  M  H  I  *  *  L  F  F  T  C  T  G  D  T  Q  Q  F  L  K  F  F  L  K  V  L  V  M  K  G  I  N  S  F  R  V  S  *  R  E  R  V  P  N  C  I  F  R  K  L  Y  S  Y  K  F  C  I  H  N  H  L  I  T  R  M  E  D  *  Q  *  *  P  W  K  V  F  E  L  R  T  F  I  *  R  H  H  H  G  C  S  L  L  L  L  A  R  *  M  *  R  F  C  Q  S  K  Q  L  N  I  *  E  L  L  M  P  S  M  F  C  S  K  L  L  A  Y   : V  C  I  I  V  S  *  R  R  T  T  C  H  C  F  I  H  S  R :   P  L  P  Y  D  A  D  P  R  Y  F  R  L  Q  R  D  G  L  V  S  R  R  E  K  G  S  S  H  S  H  E  E  T  E  P  L  R  R  S  D  I  D  D  D  S  E  S  L  G   </first_frame>
            <second_frame>  S  L  Y  F  T  L  T  F  I  Y  L  L  L  I  G  A  L  I  D  C  K  L  L  *  T  E  M  G  F  I  G  I  G  *  C  R  D  F  H  G  K  V  L  F  F  R  D  R  *  C  N  F  L  I  *  I  V  E  I  L  I  F  L  I  L  D  H  C  W  C  C  F  V  D  H  F  L  F  *  F  F  L  V  F  G  L  A  V  S  L  T  L  L  Y  E  S  S  L  C  F  L  L  K  K  L  R  *  *  *  Q  F  E  N  *  V  L  T  S  G  V  *  D  *  E  L  R  I  I  P  C  K  F  I  V  S  I  Y  L  C  F  F  I  L  L  Q  F  V  E  C  *  A  A  G  L  C  Q  R  S  C  L  *  I  *  I  *  C  D  F  A  C  S  H  I  K  F  K  L  *  A  Y  L  F  H  S  S  E  A  V  I  F  L  C  H  S  R  *  T  I  H  V  F  L  H  Q  C  I  Y  D  S  C  S  L  L  V  Q  V  I  H  N  S  F  *  N  F  F  *  R  S  W  S  *  R  A  S  T  H  S  G  F  P  E  E  R  G  C  P  I  A  F  S  V  S  Y  I  L  T  S  F  A  S  I  T  I  *  S  Q  E  W  R  I  D  N  D  S  R  G  R  F  L  S  Y  E  H  L  F  E  D  I  I  M  G  A  V  C  C  C  L  R  D  E  C  E  D  F  A  N  P  N  S  S  I  Y  R  N  C  L  C  L  R  C  F  V  Q  N  F  L  H  M  :  Y  A  S  L  F  H  R  G  E  Q  H  A  I  A  S  S  T  Q   : D  H  F  L  T  M  L  I  Q  D  T  S  A  C  N  V  M  G  *  S  Q  E  G  R  K  A  Q  V  I  H  M  R  K  L  N  H  Y  E  E  V  I  L  M  M  I  L  N  L  W  V  </second_frame>
            <third_frame>   H  C  I  L  R  S  L  L  S  I  S  Y  *  L  E  L  *  S  I  V  N  C  Y  E  L  K  W  V  S  S  E  S  V  D  A  E  I  F  T  V  K  F  C  F  L  G  I  D  N  A  I  S  *  F  E  L  *  K  S  *  F  S  *  F  L  I  T  V  G  V  V  L  L  I  I  F  C  F  N  F  F  L  F  S  V  *  L  C  L  *  H  C  C  M  R  V  P  F  A  S  Y  *  R  N  *  D  D  D  N  N  L  R  I  K  F  S  Q  V  V  F  K  I  R  N  *  E  *  F  P  A  N  L  *  C  P  S  I  Y  V  F  L  F  Y  C  N  L  L  S  V  R  Q  L  D  Y  A  K  E  A  V  Y  K  F  E  F  N  V  I  L  L  A  H  I  S  N  L  N  C  K  L  I  Y  F  I  L  R  K  L  *  F  S  C  V  T  R  G  R  P  S  M  Y  F  S  I  N  A  Y  M  I  V  V  L  Y  L  Y  R  *  Y  T  T  V  F  E  I  F  S  E  G  L  G  H  E  G  H  Q  L  I  Q  G  F  L  K  R  E  G  A  Q  L  H  F  P  *  V  I  F  L  Q  V  L  H  P  *  P  S  N  H  K  N  G  G  L  T  M  I  A  V  E  G  F  *  V  T  N  I  Y  L  K  T  S  S  W  V  Q  F  V  A  A  C  E  M  N  V  K  I  L  P  I  Q  T  A  Q  Y  I  G  T  A  Y  A  F  D  V  L  F  K  T  S  C  I  C :   M  H  H  C  F  I  E  E  N  N  M  P  L  L  H  P  L  K  :  T  T  S  L  R  C  *  S  K  I  L  P  L  A  T  *  W  A  S  L  K  K  G  E  R  L  K  S  F  T  *  G  N  *  T  T  T  K  K  *  Y  *  *  *  F  *  I  F  G  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0092M23.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41883" stop="42074"/>
                    <exon start="42840" stop="42894"/>
                    <exon start="42965" stop="43020"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SQEWRIDNDSRGRFLSYEHLFEDIIMGAVCCCLRDECEDFANPNSSIYRNCLCLRCFVQNFLHMYASLFHRGEQHAIASSTQDHFLTMLIQDTSACNVMG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0092M23.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41929" stop="42074"/>
                    <exon start="42840" stop="42894"/>
                    <exon start="42965" stop="42985"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VTNIYLKTSSWVQFVAACEMNVKILPIQTAQYIGTAYAFDVLFKTSCICMHHCFIEENNMPLLHPLKTTSLRC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="49365" PGL_stop="46541"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49365" e_stop="49164"/>
            <exon e_start="48495" e_stop="48348"/>
            <exon e_start="48265" e_stop="48146"/>
            <exon e_start="48045" e_stop="48002"/>
            <exon e_start="47916" e_stop="47791"/>
            <exon e_start="47469" e_stop="47385"/>
            <exon e_start="47010" e_stop="46954"/>
            <exon e_start="46861" e_stop="46541"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.891" e_score="1.000"/>
          <exon-intron don_prob="0.361" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.932" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.871" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.857" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="49365" e_stop="49164" e_length="202"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.891">
            <gDNA_intron_boundary i_start="49163" i_stop="48496" i_length="668"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="48495" e_stop="48348" e_length="148"/>
          </exon>
          <intron i_serial="2" don_prob="0.361" acc_prob="0.998">
            <gDNA_intron_boundary i_start="48347" i_stop="48266" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="48265" e_stop="48146" e_length="120"/>
          </exon>
          <intron i_serial="3" don_prob="0.932" acc_prob="0.990">
            <gDNA_intron_boundary i_start="48145" i_stop="48046" i_length="100"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="48045" e_stop="48002" e_length="44"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="48001" i_stop="47917" i_length="85"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="47916" e_stop="47791" e_length="126"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.871">
            <gDNA_intron_boundary i_start="47790" i_stop="47470" i_length="321"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="47469" e_stop="47385" e_length="85"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="47384" i_stop="47011" i_length="374"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="47010" e_stop="46954" e_length="57"/>
          </exon>
          <intron i_serial="7" don_prob="0.952" acc_prob="0.857">
            <gDNA_intron_boundary i_start="46953" i_stop="46862" i_length="92"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="46861" e_stop="46541" e_length="321"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49365" stop="49164"/>
              <exon start="48495" stop="48348"/>
              <exon start="48265" stop="48146"/>
              <exon start="48045" stop="48002"/>
              <exon start="47916" stop="47791"/>
              <exon start="47469" stop="47385"/>
              <exon start="47010" stop="46954"/>
              <exon start="46861" stop="46541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U564793" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACATGGTGTATATTTTAAGTTGTCCTAAGTCCATTTTCACATCACACCAAACTCCTAAATTTTTACCCTTTTTTCCTAAAAAAAATTTGTTCCTATTCAAGATTTGATTTCAGAAGAAGCAAATTCTGGTTAAGGCCCCAAAAGAGTCTTTCCTAATTTATATGCTTCCATTGAATCTCCGAAAATTCCTAATTTCTTCGAG : GTTCCTGCATCGATTAATGGCCACCAACTGTGGAAAGAAGTTTATCCGAATTGATATCAGTTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTCATAAAGCTATAGCGTTAACCAGTGATCAGTATGATTTTGAG : ATTAAGTGGCATCCGTTTCTTCTCAACCCTTCTGCACCTAAAGAAGGGATTAACAAGAAAGATTACTACAGAAATAAGTTTGGATCTCGCTCTGAACAAATGATGTCAAGAATGTCGGAG : GTTTTTAAGGGCCTTGGGATGGAATACAACATGTCAGGACTTAC : GGGAAGTAGTCTGGACAGCCACAGGCTACTATATTTCGCAGGACAACAGGGGCTTGACAAGCAAAATAATCTTGCTGAGGAGCTTTTTCTCGGCTATTTCACACAGGGAAGGTATATAGGTGACAG : AGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAG : GTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTG : CTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGTCACAGCATAGTTCATCTCCAACTTCATCTAAGAGTCTTTCTACCTCTTGTGAAGTTGTATGCCCACTGGATAGATACCGGTGACTCTTCTTAAAGTGAAATATTCGATCAGTATTATATATATGTGCTCGTGGCGACTTAATTGTACTGCAGTAATTACTTCTGTTTTAATTTCCATTGAAGGTTGAGAGATTTATGTGACATAATTGAAATGATATTTGCATCGTATAGTTGTTTTTCATAGT</gDNA_template>
            <first_frame> T  W  C  I  F  *  V  V  L  S  P  F  S  H  H  T  K  L  L  N  F  Y  P  F  F  L  K  K  I  C  S  Y  S  R  F  D  F  R  R  S  K  F  W  L  R  P  Q  K  S  L  S  *  F  I  C  F  H  *  I  S  E  N  S  *  F  L  R   : G  S  C  I  D  *  W  P  P  T  V  E  R  S  L  S  E  L  I  S  V  R  I  L  C  A  P  G  A  L  W  G  K  R  T  F  I  K  L  *  R  *  P  V  I  S  M  I  L  R :   L  S  G  I  R  F  F  S  T  L  L  H  L  K  K  G  L  T  R  K  I  T  T  E  I  S  L  D  L  A  L  N  K  *  C  Q  E  C  R  R :   F  L  R  A  L  G  W  N  T  T  C  Q  D  L   : R  E  V  V  W  T  A  T  G  Y  Y  I  S  Q  D  N  R  G  L  T  S  K  I  I  L  L  R  S  F  F  S  A  I  S  H  R  E  G  I  *  V  T   : E  N  F  L  L  K  L  Q  E  K  L  V  W  K  E  Q  L  T  S  L  K  I  P  T  M  G  *  R  R :   *  M  K  S  F  S  N  T  H  Q  I  Y  Q  A  S  H  I  L  C :   *  M  A  S  T  S  *  A  V  A  N  L  Q  R  V  S  Y  E  L  F  K  L  L  Q  M  S  Q  H  S  S  S  P  T  S  S  K  S  L  S  T  S  C  E  V  V  C  P  L  D  R  Y  R  *  L  F  L  K  *  N  I  R  S  V  L  Y  I  C  A  R  G  D  L  I  V  L  Q  *  L  L  L  F  *  F  P  L  K  V  E  R  F  M  *  H  N  *  N  D  I  C  I  V  *  L  F  F  I   </first_frame>
            <second_frame>  H  G  V  Y  F  K  L  S  *  V  H  F  H  I  T  P  N  S  *  I  F  T  L  F  S  *  K  K  F  V  P  I  Q  D  L  I  S  E  E  A  N  S  G  *  G  P  K  R  V  F  P  N  L  Y  A  S  I  E  S  P  K  I  P  N  F  F  E  :  V  P  A  S  I  N  G  H  Q  L  W  K  E  V  Y  P  N  *  Y  Q  F  G  Y  C  V  P  L  V  L  C  G  E  K  E  P  S  *  S  Y  S  V  N  Q  *  S  V  *  F  *   : D  *  V  A  S  V  S  S  Q  P  F  C  T  *  R  R  D  *  Q  E  R  L  L  Q  K  *  V  W  I  S  L  *  T  N  D  V  K  N  V  G   : G  F  *  G  P  W  D  G  I  Q  H  V  R  T  Y  :  G  K  *  S  G  Q  P  Q  A  T  I  F  R  R  T  T  G  A  *  Q  A  K  *  S  C  *  G  A  F  S  R  L  F  H  T  G  K  V  Y  R  *  Q  :  R  I  S  Y  *  S  C  K  K  S  W  C  G  R  S  S  *  L  P  *  R  S  Q  Q  W  A  K  G   : G  E  *  R  A  S  A  T  L  I  K  Y  I  R  R  P  T  F  C   : A  K  W  Q  V  P  V  E  R  W  P  T  S  R  E  F  H  T  S  F  S  S  C  F  K  C  H  S  I  V  H  L  Q  L  H  L  R  V  F  L  P  L  V  K  L  Y  A  H  W  I  D  T  G  D  S  S  *  S  E  I  F  D  Q  Y  Y  I  Y  V  L  V  A  T  *  L  Y  C  S  N  Y  F  C  F  N  F  H  *  R  L  R  D  L  C  D  I  I  E  M  I  F  A  S  Y  S  C  F  S  *  </second_frame>
            <third_frame>   M  V  Y  I  L  S  C  P  K  S  I  F  T  S  H  Q  T  P  K  F  L  P  F  F  P  K  K  N  L  F  L  F  K  I  *  F  Q  K  K  Q  I  L  V  K  A  P  K  E  S  F  L  I  Y  M  L  P  L  N  L  R  K  F  L  I  S  S  R :   F  L  H  R  L  M  A  T  N  C  G  K  K  F  I  R  I  D  I  S  S  D  T  V  C  P  W  C  F  V  G  K  K  N  L  H  K  A  I  A  L  T  S  D  Q  Y  D  F  E  :  I  K  W  H  P  F  L  L  N  P  S  A  P  K  E  G  I  N  K  K  D  Y  Y  R  N  K  F  G  S  R  S  E  Q  M  M  S  R  M  S  E  :  V  F  K  G  L  G  M  E  Y  N  M  S  G  L  T :   G  S  S  L  D  S  H  R  L  L  Y  F  A  G  Q  Q  G  L  D  K  Q  N  N  L  A  E  E  L  F  L  G  Y  F  T  Q  G  R  Y  I  G  D  R :   E  F  L  I  E  A  A  R  K  V  G  V  E  G  A  A  D  F  L  E  D  P  N  N  G  L  K  E  :  V  N  E  E  L  Q  Q  H  S  S  N  I  S  G  V  P  H  F  V  :  L  N  G  K  Y  Q  L  S  G  G  Q  P  P  E  S  F  I  R  A  F  Q  A  A  S  N  V  T  A  *  F  I  S  N  F  I  *  E  S  F  Y  L  L  *  S  C  M  P  T  G  *  I  P  V  T  L  L  K  V  K  Y  S  I  S  I  I  Y  M  C  S  W  R  L  N  C  T  A  V  I  T  S  V  L  I  S  I  E  G  *  E  I  Y  V  T  *  L  K  *  Y  L  H  R  I  V  V  F  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0092M23.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49258" stop="49164"/>
                    <exon start="48495" stop="48348"/>
                    <exon start="48265" stop="48146"/>
                    <exon start="48045" stop="48002"/>
                    <exon start="47916" stop="47791"/>
                    <exon start="47469" stop="47385"/>
                    <exon start="47010" stop="46954"/>
                    <exon start="46861" stop="46775"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>759</number_coding_nucleotides>
                  <number_encoded_amino_acids>253</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQKKQILVKAPKESFLIYMLPLNLRKFLISSRFLHRLMATNCGKKFIRIDISSDTVCPWCFVGKKNLHKAIALTSDQYDFEIKWHPFLLNPSAPKEGINKKDYYRNKFGSRSEQMMSRMSEVFKGLGMEYNMSGLTGSSLDSHRLLYFAGQQGLDKQNNLAEELFLGYFTQGRYIGDREFLIEAARKVGVEGAADFLEDPNNGLKEVNEELQQHSSNISGVPHFVLNGKYQLSGGQPPESFIRAFQAASNVTA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="47471" e_stop="46954"/>
            <exon e_start="46861" e_stop="46635"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.952" acc_prob="0.857" e_score="0.998"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="47471" e_stop="46954" e_length="518"/>
          </exon>
          <intron i_serial="1" don_prob="0.952" acc_prob="0.857">
            <gDNA_intron_boundary i_start="46953" i_stop="46862" i_length="92"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="46861" e_stop="46635" e_length="227"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47471" stop="46954"/>
              <exon start="46861" stop="46635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U596988" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAGAATTTCTTATTGAAGCTGCAAGAAAAGTTGGTGTGGAAGGAGCAGCTGACTTCCTTGAAGATCCCAACAATGGGCTAAAGGAGGTATATTTCCACAGCTTCTATCCAATAGCCAACTGGAGAGTCTGTCTTCTATTTTTCTTGCTCGTTTCCTTTCTCGCAGAACATTCACTGAGGGGTGTGTGGGTGTGGGTGTAAGTAGTACTGCTGGAGAACTGCTAAAGACAGTAGTAAAGCAGCCCATCTCAATTATATCTGTACTTGGCATTATGACTAGTATTTTGTCCTGCTCCTTGATGGACCTAGTCATTCATATCACATGTTACCTAATTTTCAGTACCTCATGCTCACTACTACTACTACTTCCCCAATCCCCCCTGCAGGTTGGCTCGTCAGTAGGATAGATCACAATTTTATAAATATTTAAAGTAAATTTTGTTGGTTTTGGGTATGTGAAGGTGAATGAAGAGCTTCAGCAACACTCATCAAATATATCAGGCGTCCCACATTTTGTG : CTAAATGGCAAGTACCAGTTGAGCGGTGGCCAACCTCCAGAGAGTTTCATACGAGCTTTTCAAGCTGCTTCAAATGTCACAGCATAGTTCATCTCCAACTTCATCTAAGAGTCTTTCTACCTCTTGTGAAGTTGTATGCCCACTGGATAGATACCGGTGACTCTTCTTAAAGTGAAATATTCGATCAGTATTATATATATGTGCTCGTGGCGACTTAATTGTACTGC</gDNA_template>
            <first_frame> R  E  F  L  I  E  A  A  R  K  V  G  V  E  G  A  A  D  F  L  E  D  P  N  N  G  L  K  E  V  Y  F  H  S  F  Y  P  I  A  N  W  R  V  C  L  L  F  F  L  L  V  S  F  L  A  E  H  S  L  R  G  V  W  V  W  V  *  V  V  L  L  E  N  C  *  R  Q  *  *  S  S  P  S  Q  L  Y  L  Y  L  A  L  *  L  V  F  C  P  A  P  *  W  T  *  S  F  I  S  H  V  T  *  F  S  V  P  H  A  H  Y  Y  Y  Y  F  P  N  P  P  C  R  L  A  R  Q  *  D  R  S  Q  F  Y  K  Y  L  K  *  I  L  L  V  L  G  M  *  R  *  M  K  S  F  S  N  T  H  Q  I  Y  Q  A  S  H  I  L  C :   *  M  A  S  T  S  *  A  V  A  N  L  Q  R  V  S  Y  E  L  F  K  L  L  Q  M  S  Q  H  S  S  S  P  T  S  S  K  S  L  S  T  S  C  E  V  V  C  P  L  D  R  Y  R  *  L  F  L  K  *  N  I  R  S  V  L  Y  I  C  A  R  G  D  L  I  V  L  </first_frame>
            <second_frame>  E  N  F  L  L  K  L  Q  E  K  L  V  W  K  E  Q  L  T  S  L  K  I  P  T  M  G  *  R  R  Y  I  S  T  A  S  I  Q  *  P  T  G  E  S  V  F  Y  F  S  C  S  F  P  F  S  Q  N  I  H  *  G  V  C  G  C  G  C  K  *  Y  C  W  R  T  A  K  D  S  S  K  A  A  H  L  N  Y  I  C  T  W  H  Y  D  *  Y  F  V  L  L  L  D  G  P  S  H  S  Y  H  M  L  P  N  F  Q  Y  L  M  L  T  T  T  T  T  S  P  I  P  P  A  G  W  L  V  S  R  I  D  H  N  F  I  N  I  *  S  K  F  C  W  F  W  V  C  E  G  E  *  R  A  S  A  T  L  I  K  Y  I  R  R  P  T  F  C   : A  K  W  Q  V  P  V  E  R  W  P  T  S  R  E  F  H  T  S  F  S  S  C  F  K  C  H  S  I  V  H  L  Q  L  H  L  R  V  F  L  P  L  V  K  L  Y  A  H  W  I  D  T  G  D  S  S  *  S  E  I  F  D  Q  Y  Y  I  Y  V  L  V  A  T  *  L  Y  C </second_frame>
            <third_frame>   R  I  S  Y  *  S  C  K  K  S  W  C  G  R  S  S  *  L  P  *  R  S  Q  Q  W  A  K  G  G  I  F  P  Q  L  L  S  N  S  Q  L  E  S  L  S  S  I  F  L  A  R  F  L  S  R  R  T  F  T  E  G  C  V  G  V  G  V  S  S  T  A  G  E  L  L  K  T  V  V  K  Q  P  I  S  I  I  S  V  L  G  I  M  T  S  I  L  S  C  S  L  M  D  L  V  I  H  I  T  C  Y  L  I  F  S  T  S  C  S  L  L  L  L  L  P  Q  S  P  L  Q  V  G  S  S  V  G  *  I  T  I  L  *  I  F  K  V  N  F  V  G  F  G  Y  V  K  V  N  E  E  L  Q  Q  H  S  S  N  I  S  G  V  P  H  F  V  :  L  N  G  K  Y  Q  L  S  G  G  Q  P  P  E  S  F  I  R  A  F  Q  A  A  S  N  V  T  A  *  F  I  S  N  F  I  *  E  S  F  Y  L  L  *  S  C  M  P  T  G  *  I  P  V  T  L  L  K  V  K  Y  S  I  S  I  I  Y  M  C  S  W  R  L  N  C  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0092M23.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47409" stop="47065"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>342</number_coding_nucleotides>
                  <number_encoded_amino_acids>114</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSQQWAKGGIFPQLLSNSQLESLSSIFLARFLSRRTFTEGCVGVGVSSTAGELLKTVVKQPISIISVLGIMTSILSCSLMDLVIHITCYLIFSTSCSLLLLLPQSPLQVGSSVG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0092M23.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47002" stop="46954"/>
                    <exon start="46861" stop="46692"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RASATLIKYIRRPTFCAKWQVPVERWPTSREFHTSFSSCFKCHSIVHLQLHLRVFLPLVKLYAHWIDTGDSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="50926" PGL_stop="55850"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50926" e_stop="51495"/>
            <exon e_start="52220" e_stop="52413"/>
            <exon e_start="52499" e_stop="52546"/>
            <exon e_start="52824" e_stop="52896"/>
            <exon e_start="53113" e_stop="53161"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.792" e_score="0.996"/>
          <exon-intron don_prob="0.923" acc_prob="0.998" e_score="0.990"/>
          <exon-intron don_prob="0.981" acc_prob="0.932" e_score="0.979"/>
          <exon-intron don_prob="0.982" acc_prob="0.961" e_score="0.863"/>
          <exon-only e_score="0.898"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="50926" e_stop="51495" e_length="570"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.792">
            <gDNA_intron_boundary i_start="51496" i_stop="52219" i_length="724"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="52220" e_stop="52413" e_length="194"/>
          </exon>
          <intron i_serial="2" don_prob="0.923" acc_prob="0.998">
            <gDNA_intron_boundary i_start="52414" i_stop="52498" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="0.979">
            <gDNA_exon_boundary e_start="52499" e_stop="52546" e_length="48"/>
          </exon>
          <intron i_serial="3" don_prob="0.981" acc_prob="0.932">
            <gDNA_intron_boundary i_start="52547" i_stop="52823" i_length="277"/>
          </intron>
          <exon e_serial="4" e_score="0.863">
            <gDNA_exon_boundary e_start="52824" e_stop="52896" e_length="73"/>
          </exon>
          <intron i_serial="4" don_prob="0.982" acc_prob="0.961">
            <gDNA_intron_boundary i_start="52897" i_stop="53112" i_length="216"/>
          </intron>
          <exon e_serial="5" e_score="0.898">
            <gDNA_exon_boundary e_start="53113" e_stop="53161" e_length="49"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50926" stop="51495"/>
              <exon start="52220" stop="52413"/>
              <exon start="52499" stop="52526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U565340" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51030" stop="51495"/>
              <exon start="52220" stop="52413"/>
              <exon start="52499" stop="52546"/>
              <exon start="52824" stop="52896"/>
              <exon start="53113" stop="53161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U565339" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGTATTAGTAACAAAATTTGGACATTAGAGTATTTTAAGGTCTCAAAGAATCAGTTGAGGTAAAACGGTCGGCCAGGAATTGGCAGTCCTGTCCTCCCTCCATCCAATTTCTTTGGAGCTCAAACTGCAACCTTAGATTCTTCAAATTTTCCGGATAAAATTACTTCCATTGTTTCTCGATTTCATCGTAAGTTTTTCACTGCTTACATTTATTTTTTAGAGTCAAAGTTAGGGACTTGGGTTCAAAAACAGTAGTTAAAGATCATAGTTTTTTTTTGTAATTTATGGTTCATTTTTGTTGATAGTGAGAAATAAAATGGATATTGATGAAATACTTGGGGTATCTCGGCCTGTGAGTTTGACAAACAAGAGTGCTATTTATGTTTGGGGTTACAATCAATCTGGGCAAACGGGTCGGAGAGGGAAAGAGAGGAGTTTGAGGATCCCAAAACAGCTTCCTCCAGAGCTATTTGGATGCCCAGCTGGTGGGAATTCCCGTTGGTTGGATATTGCTTGTGGTCGTGAGCATACTGCTGCTGTGGCTTCTGATGGATCGCTTTTTACATGGG : GAGCTAACGAATTTGGTCAGCTGGGTGACGGAACTGAAAATGCTAGGAAGCACCCCAAGAAAGTGAAACAATTGCAATCTGAATTTGTTATTAGTGTTTCATGTGGAGCACATTGTACTGTTGCCATTGCAGAACCACGTGAAAACGATGGTAGCATGTCAGCTCGGAGACTTTGGGTTTGGGGACAGAACCAG : GGATCCAATTACCCACGACTCTTTTGGGGTGCCTTTTCTCCTTCTACG : GTTATTCGCCAAGTTTCTTGTGGTGCTGTTCATGTTGTAGCTCTATCAGAAGAAGGGTTACTACAAGCTTGGG : GCTATAATGAATATGGTCAGCTTGGCAGAGGTGTTACATCAGAAGGCCT</gDNA_template>
            <first_frame> K  Y  *  *  Q  N  L  D  I  R  V  F  *  G  L  K  E  S  V  E  V  K  R  S  A  R  N  W  Q  S  C  P  P  S  I  Q  F  L  W  S  S  N  C  N  L  R  F  F  K  F  S  G  *  N  Y  F  H  C  F  S  I  S  S  *  V  F  H  C  L  H  L  F  F  R  V  K  V  R  D  L  G  S  K  T  V  V  K  D  H  S  F  F  L  *  F  M  V  H  F  C  *  *  *  E  I  K  W  I  L  M  K  Y  L  G  Y  L  G  L  *  V  *  Q  T  R  V  L  F  M  F  G  V  T  I  N  L  G  K  R  V  G  E  G  K  R  G  V  *  G  S  Q  N  S  F  L  Q  S  Y  L  D  A  Q  L  V  G  I  P  V  G  W  I  L  L  V  V  V  S  I  L  L  L  W  L  L  M  D  R  F  L  H  G  :  E  L  T  N  L  V  S  W  V  T  E  L  K  M  L  G  S  T  P  R  K  *  N  N  C  N  L  N  L  L  L  V  F  H  V  E  H  I  V  L  L  P  L  Q  N  H  V  K  T  M  V  A  C  Q  L  G  D  F  G  F  G  D  R  T  R :   D  P  I  T  H  D  S  F  G  V  P  F  L  L  L  R :   L  F  A  K  F  L  V  V  L  F  M  L  *  L  Y  Q  K  K  G  Y  Y  K  L  G  :  A  I  M  N  M  V  S  L  A  E  V  L  H  Q  K  A  </first_frame>
            <second_frame>  S  I  S  N  K  I  W  T  L  E  Y  F  K  V  S  K  N  Q  L  R  *  N  G  R  P  G  I  G  S  P  V  L  P  P  S  N  F  F  G  A  Q  T  A  T  L  D  S  S  N  F  P  D  K  I  T  S  I  V  S  R  F  H  R  K  F  F  T  A  Y  I  Y  F  L  E  S  K  L  G  T  W  V  Q  K  Q  *  L  K  I  I  V  F  F  C  N  L  W  F  I  F  V  D  S  E  K  *  N  G  Y  *  *  N  T  W  G  I  S  A  C  E  F  D  K  Q  E  C  Y  L  C  L  G  L  Q  S  I  W  A  N  G  S  E  R  E  R  E  E  F  E  D  P  K  T  A  S  S  R  A  I  W  M  P  S  W  W  E  F  P  L  V  G  Y  C  L  W  S  *  A  Y  C  C  C  G  F  *  W  I  A  F  Y  M  G :   S  *  R  I  W  S  A  G  *  R  N  *  K  C  *  E  A  P  Q  E  S  E  T  I  A  I  *  I  C  Y  *  C  F  M  W  S  T  L  Y  C  C  H  C  R  T  T  *  K  R  W  *  H  V  S  S  E  T  L  G  L  G  T  E  P   : G  I  Q  L  P  T  T  L  L  G  C  L  F  S  F  Y   : G  Y  S  P  S  F  L  W  C  C  S  C  C  S  S  I  R  R  R  V  T  T  S  L  G :   L  *  *  I  W  S  A  W  Q  R  C  Y  I  R  R  P </second_frame>
            <third_frame>   V  L  V  T  K  F  G  H  *  S  I  L  R  S  Q  R  I  S  *  G  K  T  V  G  Q  E  L  A  V  L  S  S  L  H  P  I  S  L  E  L  K  L  Q  P  *  I  L  Q  I  F  R  I  K  L  L  P  L  F  L  D  F  I  V  S  F  S  L  L  T  F  I  F  *  S  Q  S  *  G  L  G  F  K  N  S  S  *  R  S  *  F  F  F  V  I  Y  G  S  F  L  L  I  V  R  N  K  M  D  I  D  E  I  L  G  V  S  R  P  V  S  L  T  N  K  S  A  I  Y  V  W  G  Y  N  Q  S  G  Q  T  G  R  R  G  K  E  R  S  L  R  I  P  K  Q  L  P  P  E  L  F  G  C  P  A  G  G  N  S  R  W  L  D  I  A  C  G  R  E  H  T  A  A  V  A  S  D  G  S  L  F  T  W   : G  A  N  E  F  G  Q  L  G  D  G  T  E  N  A  R  K  H  P  K  K  V  K  Q  L  Q  S  E  F  V  I  S  V  S  C  G  A  H  C  T  V  A  I  A  E  P  R  E  N  D  G  S  M  S  A  R  R  L  W  V  W  G  Q  N  Q  :  G  S  N  Y  P  R  L  F  W  G  A  F  S  P  S  T  :  V  I  R  Q  V  S  C  G  A  V  H  V  V  A  L  S  E  E  G  L  L  Q  A  W   : G  Y  N  E  Y  G  Q  L  G  R  G  V  T  S  E  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0092M23.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51195" stop="51495"/>
                    <exon start="52220" stop="52413"/>
                    <exon start="52499" stop="52546"/>
                    <exon start="52824" stop="52896"/>
                    <exon start="53113" stop="53159"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>663</number_coding_nucleotides>
                  <number_encoded_amino_acids>221</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFFVIYGSFLLIVRNKMDIDEILGVSRPVSLTNKSAIYVWGYNQSGQTGRRGKERSLRIPKQLPPELFGCPAGGNSRWLDIACGREHTAAVASDGSLFTWGANEFGQLGDGTENARKHPKKVKQLQSEFVISVSCGAHCTVAIAEPRENDGSMSARRLWVWGQNQGSNYPRLFWGAFSPSTVIRQVSCGAVHVVALSEEGLLQAWGYNEYGQLGRGVTSEG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="51032" e_stop="51113"/>
            <exon e_start="51232" e_stop="51495"/>
            <exon e_start="52220" e_stop="52413"/>
            <exon e_start="52499" e_stop="52546"/>
            <exon e_start="52824" e_stop="52896"/>
            <exon e_start="53113" e_stop="53284"/>
            <exon e_start="54801" e_stop="55232"/>
            <exon e_start="55319" e_stop="55510"/>
            <exon e_start="55626" e_stop="55850"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.924" acc_prob="0.978" e_score="0.988"/>
          <exon-intron don_prob="0.993" acc_prob="0.792" e_score="1.000"/>
          <exon-intron don_prob="0.923" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.932" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.923" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.253" acc_prob="0.978" e_score="0.975"/>
          <exon-intron don_prob="0.256" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="51032" e_stop="51113" e_length="82"/>
          </exon>
          <intron i_serial="1" don_prob="0.924" acc_prob="0.978">
            <gDNA_intron_boundary i_start="51114" i_stop="51231" i_length="118"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="51232" e_stop="51495" e_length="264"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.792">
            <gDNA_intron_boundary i_start="51496" i_stop="52219" i_length="724"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="52220" e_stop="52413" e_length="194"/>
          </exon>
          <intron i_serial="3" don_prob="0.923" acc_prob="0.998">
            <gDNA_intron_boundary i_start="52414" i_stop="52498" i_length="85"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="52499" e_stop="52546" e_length="48"/>
          </exon>
          <intron i_serial="4" don_prob="0.981" acc_prob="0.932">
            <gDNA_intron_boundary i_start="52547" i_stop="52823" i_length="277"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="52824" e_stop="52896" e_length="73"/>
          </exon>
          <intron i_serial="5" don_prob="0.982" acc_prob="0.961">
            <gDNA_intron_boundary i_start="52897" i_stop="53112" i_length="216"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="53113" e_stop="53284" e_length="172"/>
          </exon>
          <intron i_serial="6" don_prob="0.923" acc_prob="0.990">
            <gDNA_intron_boundary i_start="53285" i_stop="54800" i_length="1516"/>
          </intron>
          <exon e_serial="7" e_score="0.975">
            <gDNA_exon_boundary e_start="54801" e_stop="55232" e_length="432"/>
          </exon>
          <intron i_serial="7" don_prob="0.253" acc_prob="0.978">
            <gDNA_intron_boundary i_start="55233" i_stop="55318" i_length="86"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="55319" e_stop="55510" e_length="192"/>
          </exon>
          <intron i_serial="8" don_prob="0.256" acc_prob="0.997">
            <gDNA_intron_boundary i_start="55511" i_stop="55625" i_length="115"/>
          </intron>
          <exon e_serial="9" e_score="0.982">
            <gDNA_exon_boundary e_start="55626" e_stop="55850" e_length="225"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51032" stop="51113"/>
              <exon start="51232" stop="51495"/>
              <exon start="52220" stop="52413"/>
              <exon start="52499" stop="52546"/>
              <exon start="52824" stop="52896"/>
              <exon start="53113" stop="53284"/>
              <exon start="54801" stop="55100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U565338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53196" stop="53284"/>
              <exon start="54801" stop="55232"/>
              <exon start="55319" stop="55510"/>
              <exon start="55626" stop="55850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U565337" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTTCTTTGGAGCTCAAACTGCAACCTTAGATTCTTCAAATTTTCCGGATAAAATTACTTCCATTGTTTCTCGATTTCATC : TGAGAAATAAAATGGATATTGATGAAATACTTGGGGTATCTCGGCCTGTGAGTTTGACAAACAAGAGTGCTATTTATGTTTGGGGTTACAATCAATCTGGGCAAACGGGTCGGAGAGGGAAAGAGAGGAGTTTGAGGATCCCAAAACAGCTTCCTCCAGAGCTATTTGGATGCCCAGCTGGTGGGAATTCCCGTTGGTTGGATATTGCTTGTGGTCGTGAGCATACTGCTGCTGTGGCTTCTGATGGATCGCTTTTTACATGGG : GAGCTAACGAATTTGGTCAGCTGGGTGACGGAACTGAAAATGCTAGGAAGCACCCCAAGAAAGTGAAACAATTGCAATCTGAATTTGTTATTAGTGTTTCATGTGGAGCACATTGTACTGTTGCCATTGCAGAACCACGTGAAAACGATGGTAGCATGTCAGCTCGGAGACTTTGGGTTTGGGGACAGAACCAG : GGATCCAATTACCCACGACTCTTTTGGGGTGCCTTTTCTCCTTCTACG : GTTATTCGCCAAGTTTCTTGTGGTGCTGTTCATGTTGTAGCTCTATCAGAAGAAGGGTTACTACAAGCTTGGG : GCTATAATGAATATGGTCAGCTTGGCAGAGGTGTTACATCAGAAGGCCTTCAAGGCCCTTGTGTAATTAATGGATATGCTAGATTTCTTGATGAAGCCCCTGAACTTGTGAAGATTACCCAAGTGTCATGCGGGGAGTACCATACTGCAGCTATATCAGAGAAAGGCGAGGT : CTATACGTGGGGATTGGGGAGCGTGGGACAACTTGGCCATTGTTCACTTCAGTCAGGTGACAAGGAACTTTTACCTAGGCGTGTAGTTTCCCTTGATGGCATATGTATTAAAGAAGTTGCCTGTGGTGGTGTTCACACCTGTGCTGTGACTGCGAAAGGGGCTCTTTATGCTTGGGGTGGAGGTCAGGCTGGGCAATTGGGAGTTGGGCCATTAAATGGATTCTTTTCATGCAAGCTCAATGAATCTGAGATGATGCTCCGAAATATACCAGTGTTGGTTGTTCCAGATGGTGTGCAACTCGTTGCATGTGGTCATTCACACACACTTACTTCTGCTAAAGACGGACGAATACATGGATGGGGTTATAACTGCTATGGTCAAGCGGCTAATGAGAAGTCTACATATGCCTGGTGTCCATCACCAGTTGATTG : GTGTGTTGGGGCAGTCCGAAAATTGGCTGCTGGTGGTGGACATTCAGCAGTGCTGACTGATGCATGCTCTCTAAAAGAGCTGTGTGAATTTAGGCTTGCAGAAACAGTGAATCCATCCAATGCTTCAGTGGTTGAGGATGTCGCCTCAAGAACAGGAGCTGATGCTTTAGCACGACTTTGTGAAAGATTGAG : GGAGCATTACTACAATGATGATGAGTTTGGTCTGTGAAATCATTGATGGGTGTTAAATATGTAACATACCAATAATTCAGCCATTAGATTTGATTCTTCAATCCATCTAATACAATAGAGAAAACAGAGTCTTTGTTTCATCATTGAATAAATGTATTCTACTTTTTATGCTGCTGCATCATTAAGTTAATACAACAAAACATCTACTTACAATTTAACCATTAA</gDNA_template>
            <first_frame> N  F  F  G  A  Q  T  A  T  L  D  S  S  N  F  P  D  K  I  T  S  I  V  S  R  F  H   : L  R  N  K  M  D  I  D  E  I  L  G  V  S  R  P  V  S  L  T  N  K  S  A  I  Y  V  W  G  Y  N  Q  S  G  Q  T  G  R  R  G  K  E  R  S  L  R  I  P  K  Q  L  P  P  E  L  F  G  C  P  A  G  G  N  S  R  W  L  D  I  A  C  G  R  E  H  T  A  A  V  A  S  D  G  S  L  F  T  W   : G  A  N  E  F  G  Q  L  G  D  G  T  E  N  A  R  K  H  P  K  K  V  K  Q  L  Q  S  E  F  V  I  S  V  S  C  G  A  H  C  T  V  A  I  A  E  P  R  E  N  D  G  S  M  S  A  R  R  L  W  V  W  G  Q  N  Q  :  G  S  N  Y  P  R  L  F  W  G  A  F  S  P  S  T  :  V  I  R  Q  V  S  C  G  A  V  H  V  V  A  L  S  E  E  G  L  L  Q  A  W   : G  Y  N  E  Y  G  Q  L  G  R  G  V  T  S  E  G  L  Q  G  P  C  V  I  N  G  Y  A  R  F  L  D  E  A  P  E  L  V  K  I  T  Q  V  S  C  G  E  Y  H  T  A  A  I  S  E  K  G  E  V :   Y  T  W  G  L  G  S  V  G  Q  L  G  H  C  S  L  Q  S  G  D  K  E  L  L  P  R  R  V  V  S  L  D  G  I  C  I  K  E  V  A  C  G  G  V  H  T  C  A  V  T  A  K  G  A  L  Y  A  W  G  G  G  Q  A  G  Q  L  G  V  G  P  L  N  G  F  F  S  C  K  L  N  E  S  E  M  M  L  R  N  I  P  V  L  V  V  P  D  G  V  Q  L  V  A  C  G  H  S  H  T  L  T  S  A  K  D  G  R  I  H  G  W  G  Y  N  C  Y  G  Q  A  A  N  E  K  S  T  Y  A  W  C  P  S  P  V  D  W :   C  V  G  A  V  R  K  L  A  A  G  G  G  H  S  A  V  L  T  D  A  C  S  L  K  E  L  C  E  F  R  L  A  E  T  V  N  P  S  N  A  S  V  V  E  D  V  A  S  R  T  G  A  D  A  L  A  R  L  C  E  R  L  R :   E  H  Y  Y  N  D  D  E  F  G  L  *  N  H  *  W  V  L  N  M  *  H  T  N  N  S  A  I  R  F  D  S  S  I  H  L  I  Q  *  R  K  Q  S  L  C  F  I  I  E  *  M  Y  S  T  F  Y  A  A  A  S  L  S  *  Y  N  K  T  S  T  Y  N  L  T  I   </first_frame>
            <second_frame>  I  S  L  E  L  K  L  Q  P  *  I  L  Q  I  F  R  I  K  L  L  P  L  F  L  D  F  I  :  *  E  I  K  W  I  L  M  K  Y  L  G  Y  L  G  L  *  V  *  Q  T  R  V  L  F  M  F  G  V  T  I  N  L  G  K  R  V  G  E  G  K  R  G  V  *  G  S  Q  N  S  F  L  Q  S  Y  L  D  A  Q  L  V  G  I  P  V  G  W  I  L  L  V  V  V  S  I  L  L  L  W  L  L  M  D  R  F  L  H  G  :  E  L  T  N  L  V  S  W  V  T  E  L  K  M  L  G  S  T  P  R  K  *  N  N  C  N  L  N  L  L  L  V  F  H  V  E  H  I  V  L  L  P  L  Q  N  H  V  K  T  M  V  A  C  Q  L  G  D  F  G  F  G  D  R  T  R :   D  P  I  T  H  D  S  F  G  V  P  F  L  L  L  R :   L  F  A  K  F  L  V  V  L  F  M  L  *  L  Y  Q  K  K  G  Y  Y  K  L  G  :  A  I  M  N  M  V  S  L  A  E  V  L  H  Q  K  A  F  K  A  L  V  *  L  M  D  M  L  D  F  L  M  K  P  L  N  L  *  R  L  P  K  C  H  A  G  S  T  I  L  Q  L  Y  Q  R  K  A  R   : S  I  R  G  D  W  G  A  W  D  N  L  A  I  V  H  F  S  Q  V  T  R  N  F  Y  L  G  V  *  F  P  L  M  A  Y  V  L  K  K  L  P  V  V  V  F  T  P  V  L  *  L  R  K  G  L  F  M  L  G  V  E  V  R  L  G  N  W  E  L  G  H  *  M  D  S  F  H  A  S  S  M  N  L  R  *  C  S  E  I  Y  Q  C  W  L  F  Q  M  V  C  N  S  L  H  V  V  I  H  T  H  L  L  L  L  K  T  D  E  Y  M  D  G  V  I  T  A  M  V  K  R  L  M  R  S  L  H  M  P  G  V  H  H  Q  L  I   : G  V  L  G  Q  S  E  N  W  L  L  V  V  D  I  Q  Q  C  *  L  M  H  A  L  *  K  S  C  V  N  L  G  L  Q  K  Q  *  I  H  P  M  L  Q  W  L  R  M  S  P  Q  E  Q  E  L  M  L  *  H  D  F  V  K  D  *   : G  S  I  T  T  M  M  M  S  L  V  C  E  I  I  D  G  C  *  I  C  N  I  P  I  I  Q  P  L  D  L  I  L  Q  S  I  *  Y  N  R  E  N  R  V  F  V  S  S  L  N  K  C  I  L  L  F  M  L  L  H  H  *  V  N  T  T  K  H  L  L  T  I  *  P  L  </second_frame>
            <third_frame>   F  L  W  S  S  N  C  N  L  R  F  F  K  F  S  G  *  N  Y  F  H  C  F  S  I  S  S :   E  K  *  N  G  Y  *  *  N  T  W  G  I  S  A  C  E  F  D  K  Q  E  C  Y  L  C  L  G  L  Q  S  I  W  A  N  G  S  E  R  E  R  E  E  F  E  D  P  K  T  A  S  S  R  A  I  W  M  P  S  W  W  E  F  P  L  V  G  Y  C  L  W  S  *  A  Y  C  C  C  G  F  *  W  I  A  F  Y  M  G :   S  *  R  I  W  S  A  G  *  R  N  *  K  C  *  E  A  P  Q  E  S  E  T  I  A  I  *  I  C  Y  *  C  F  M  W  S  T  L  Y  C  C  H  C  R  T  T  *  K  R  W  *  H  V  S  S  E  T  L  G  L  G  T  E  P   : G  I  Q  L  P  T  T  L  L  G  C  L  F  S  F  Y   : G  Y  S  P  S  F  L  W  C  C  S  C  C  S  S  I  R  R  R  V  T  T  S  L  G :   L  *  *  I  W  S  A  W  Q  R  C  Y  I  R  R  P  S  R  P  L  C  N  *  W  I  C  *  I  S  *  *  S  P  *  T  C  E  D  Y  P  S  V  M  R  G  V  P  Y  C  S  Y  I  R  E  R  R  G  :  L  Y  V  G  I  G  E  R  G  T  T  W  P  L  F  T  S  V  R  *  Q  G  T  F  T  *  A  C  S  F  P  *  W  H  M  Y  *  R  S  C  L  W  W  C  S  H  L  C  C  D  C  E  R  G  S  L  C  L  G  W  R  S  G  W  A  I  G  S  W  A  I  K  W  I  L  F  M  Q  A  Q  *  I  *  D  D  A  P  K  Y  T  S  V  G  C  S  R  W  C  A  T  R  C  M  W  S  F  T  H  T  Y  F  C  *  R  R  T  N  T  W  M  G  L  *  L  L  W  S  S  G  *  *  E  V  Y  I  C  L  V  S  I  T  S  *  L  :  V  C  W  G  S  P  K  I  G  C  W  W  W  T  F  S  S  A  D  *  C  M  L  S  K  R  A  V  *  I  *  A  C  R  N  S  E  S  I  Q  C  F  S  G  *  G  C  R  L  K  N  R  S  *  C  F  S  T  T  L  *  K  I  E  :  G  A  L  L  Q  *  *  *  V  W  S  V  K  S  L  M  G  V  K  Y  V  T  Y  Q  *  F  S  H  *  I  *  F  F  N  P  S  N  T  I  E  K  T  E  S  L  F  H  H  *  I  N  V  F  Y  F  L  C  C  C  I  I  K  L  I  Q  Q  N  I  Y  L  Q  F  N  H  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0092M23.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51032" stop="51113"/>
                    <exon start="51232" stop="51495"/>
                    <exon start="52220" stop="52413"/>
                    <exon start="52499" stop="52546"/>
                    <exon start="52824" stop="52896"/>
                    <exon start="53113" stop="53284"/>
                    <exon start="54801" stop="55232"/>
                    <exon start="55319" stop="55510"/>
                    <exon start="55626" stop="55662"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1491</number_coding_nucleotides>
                  <number_encoded_amino_acids>497</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFFGAQTATLDSSNFPDKITSIVSRFHLRNKMDIDEILGVSRPVSLTNKSAIYVWGYNQSGQTGRRGKERSLRIPKQLPPELFGCPAGGNSRWLDIACGREHTAAVASDGSLFTWGANEFGQLGDGTENARKHPKKVKQLQSEFVISVSCGAHCTVAIAEPRENDGSMSARRLWVWGQNQGSNYPRLFWGAFSPSTVIRQVSCGAVHVVALSEEGLLQAWGYNEYGQLGRGVTSEGLQGPCVINGYARFLDEAPELVKITQVSCGEYHTAAISEKGEVYTWGLGSVGQLGHCSLQSGDKELLPRRVVSLDGICIKEVACGGVHTCAVTAKGALYAWGGGQAGQLGVGPLNGFFSCKLNESEMMLRNIPVLVVPDGVQLVACGHSHTLTSAKDGRIHGWGYNCYGQAANEKSTYAWCPSPVDWCVGAVRKLAAGGGHSAVLTDACSLKELCEFRLAETVNPSNASVVEDVASRTGADALARLCERLREHYYNDDEFGL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="60727" PGL_stop="55916"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60727" e_stop="60468"/>
            <exon e_start="57907" e_stop="57829"/>
            <exon e_start="57089" e_stop="57025"/>
            <exon e_start="56861" e_stop="56762"/>
            <exon e_start="56682" e_stop="56641"/>
            <exon e_start="56512" e_stop="56471"/>
            <exon e_start="56384" e_stop="56278"/>
            <exon e_start="56162" e_stop="55916"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.971" e_score="0.996"/>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="60727" e_stop="60468" e_length="260"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.971">
            <gDNA_intron_boundary i_start="60467" i_stop="57908" i_length="2560"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="57907" e_stop="57829" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="57828" i_stop="57090" i_length="739"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="57089" e_stop="57025" e_length="65"/>
          </exon>
          <intron i_serial="3" don_prob="0.971" acc_prob="0.999">
            <gDNA_intron_boundary i_start="57024" i_stop="56862" i_length="163"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="56861" e_stop="56762" e_length="100"/>
          </exon>
          <intron i_serial="4" don_prob="0.985" acc_prob="0.985">
            <gDNA_intron_boundary i_start="56761" i_stop="56683" i_length="79"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="56682" e_stop="56641" e_length="42"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.993">
            <gDNA_intron_boundary i_start="56640" i_stop="56513" i_length="128"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="56512" e_stop="56471" e_length="42"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.963">
            <gDNA_intron_boundary i_start="56470" i_stop="56385" i_length="86"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="56384" e_stop="56278" e_length="107"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="56277" i_stop="56163" i_length="115"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="56162" e_stop="55916" e_length="247"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60727" stop="60468"/>
              <exon start="57907" stop="57829"/>
              <exon start="57089" stop="57025"/>
              <exon start="56861" stop="56762"/>
              <exon start="56682" stop="56641"/>
              <exon start="56512" stop="56471"/>
              <exon start="56384" stop="56278"/>
              <exon start="56162" stop="55916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U583377" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCTCTATCTATGCTAGGTAGCTTATATGATTTAATAGTTCGATTAATTTAAATACGCATTAAAGATAGAGGATGGGAAGAGGTAGGGTAGAGTTGAAACGGATCGAGAACAAAATAAGCAGACAAGTAACATTCTCAAAGAGACGATCTGGATTATTGAAGAAAGCTAATGAGATCTCAGTATTATGTGATGCTGATGTTGCATTGATTGTGTTTTCTACCAAAGGCAAACTTTTCGAGTATTCCTCAAATGACTCAAG : TATGGAAAGTATTCTTGAAAGATATGAAAGATGCTCATATGCAGAGAGACAGATGAATGCTAATGATTCTGATCCCAAG : GAAAATTGGAGTGTGGAGTATCCGAAGCTCATGTCAAGAATTGAACTTTTACAAAGAAATATAAG : GCATTACATGGGTCAGGATCTGGACCCTCTCAGTTTGCGTGAGCTCCAGAGTATAGAGCAACAGATTGATACTTCATTAAAGAGAATTAGAAGCAGGAAG : AATCAACTGATGCACGAGTCCATTTCTGAGCTGCAGAAAAAG : GAGAAAGCGCTCCAAGAACAAAACAACTTGATTACTAAGAAG : CTAAAAGAAAATGAGAAGACACAACCCAACTCATCAGGCCAAAACTCAGCAACAGTTCATGTGTTTCCATCACATTCTCACCACCAACTTCCTAACCTTACAATTGG : GGGGGCTTTTGGAGGAATGAACAGAGATGGATCGGGTCAGGCTCATCACTATCCGGGTTCAAATAACAATAATAATAATTCCTCATTGATACCGCCATGGATGCTCCGCCACGTCAGCAACGAAGGATGAAATAATATTCCGGAGAGTATAATTAATTAATTGTATATGTTTTGTTCCAAACAATATTAATCAACTTTCCTGTTTGTGATGTATAATTAGCTTAAGCTAATAAAACTTTTCATCCTT</gDNA_template>
            <first_frame> L  S  I  Y  A  R  *  L  I  *  F  N  S  S  I  N  L  N  T  H  *  R  *  R  M  G  R  G  R  V  E  L  K  R  I  E  N  K  I  S  R  Q  V  T  F  S  K  R  R  S  G  L  L  K  K  A  N  E  I  S  V  L  C  D  A  D  V  A  L  I  V  F  S  T  K  G  K  L  F  E  Y  S  S  N  D  S  S :   M  E  S  I  L  E  R  Y  E  R  C  S  Y  A  E  R  Q  M  N  A  N  D  S  D  P  K  :  E  N  W  S  V  E  Y  P  K  L  M  S  R  I  E  L  L  Q  R  N  I  R :   H  Y  M  G  Q  D  L  D  P  L  S  L  R  E  L  Q  S  I  E  Q  Q  I  D  T  S  L  K  R  I  R  S  R  K  :  N  Q  L  M  H  E  S  I  S  E  L  Q  K  K  :  E  K  A  L  Q  E  Q  N  N  L  I  T  K  K  :  L  K  E  N  E  K  T  Q  P  N  S  S  G  Q  N  S  A  T  V  H  V  F  P  S  H  S  H  H  Q  L  P  N  L  T  I  G :   G  A  F  G  G  M  N  R  D  G  S  G  Q  A  H  H  Y  P  G  S  N  N  N  N  N  N  S  S  L  I  P  P  W  M  L  R  H  V  S  N  E  G  *  N  N  I  P  E  S  I  I  N  *  L  Y  M  F  C  S  K  Q  Y  *  S  T  F  L  F  V  M  Y  N  *  L  K  L  I  K  L  F  I  L </first_frame>
            <second_frame>  S  L  S  M  L  G  S  L  Y  D  L  I  V  R  L  I  *  I  R  I  K  D  R  G  W  E  E  V  G  *  S  *  N  G  S  R  T  K  *  A  D  K  *  H  S  Q  R  D  D  L  D  Y  *  R  K  L  M  R  S  Q  Y  Y  V  M  L  M  L  H  *  L  C  F  L  P  K  A  N  F  S  S  I  P  Q  M  T  Q   : V  W  K  V  F  L  K  D  M  K  D  A  H  M  Q  R  D  R  *  M  L  M  I  L  I  P  R :   K  I  G  V  W  S  I  R  S  S  C  Q  E  L  N  F  Y  K  E  I  *   : G  I  T  W  V  R  I  W  T  L  S  V  C  V  S  S  R  V  *  S  N  R  L  I  L  H  *  R  E  L  E  A  G  R :   I  N  *  C  T  S  P  F  L  S  C  R  K  R :   R  K  R  S  K  N  K  T  T  *  L  L  R  S :   *  K  K  M  R  R  H  N  P  T  H  Q  A  K  T  Q  Q  Q  F  M  C  F  H  H  I  L  T  T  N  F  L  T  L  Q  L   : G  G  L  L  E  E  *  T  E  M  D  R  V  R  L  I  T  I  R  V  Q  I  T  I  I  I  I  P  H  *  Y  R  H  G  C  S  A  T  S  A  T  K  D  E  I  I  F  R  R  V  *  L  I  N  C  I  C  F  V  P  N  N  I  N  Q  L  S  C  L  *  C  I  I  S  L  S  *  *  N  F  S  S   </second_frame>
            <third_frame>   L  Y  L  C  *  V  A  Y  M  I  *  *  F  D  *  F  K  Y  A  L  K  I  E  D  G  K  R  *  G  R  V  E  T  D  R  E  Q  N  K  Q  T  S  N  I  L  K  E  T  I  W  I  I  E  E  S  *  *  D  L  S  I  M  *  C  *  C  C  I  D  C  V  F  Y  Q  R  Q  T  F  R  V  F  L  K  *  L  K  :  Y  G  K  Y  S  *  K  I  *  K  M  L  I  C  R  E  T  D  E  C  *  *  F  *  S  Q   : G  K  L  E  C  G  V  S  E  A  H  V  K  N  *  T  F  T  K  K  Y  K  :  A  L  H  G  S  G  S  G  P  S  Q  F  A  *  A  P  E  Y  R  A  T  D  *  Y  F  I  K  E  N  *  K  Q  E   : E  S  T  D  A  R  V  H  F  *  A  A  E  K   : G  E  S  A  P  R  T  K  Q  L  D  Y  *  E   : A  K  R  K  *  E  D  T  T  Q  L  I  R  P  K  L  S  N  S  S  C  V  S  I  T  F  S  P  P  T  S  *  P  Y  N  W  :  G  G  F  W  R  N  E  Q  R  W  I  G  S  G  S  S  L  S  G  F  K  *  Q  *  *  *  F  L  I  D  T  A  M  D  A  P  P  R  Q  Q  R  R  M  K  *  Y  S  G  E  Y  N  *  L  I  V  Y  V  L  F  Q  T  I  L  I  N  F  P  V  C  D  V  *  L  A  *  A  N  K  T  F  H  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0092M23.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60658" stop="60468"/>
                    <exon start="57907" stop="57829"/>
                    <exon start="57089" stop="57025"/>
                    <exon start="56861" stop="56762"/>
                    <exon start="56682" stop="56641"/>
                    <exon start="56512" stop="56471"/>
                    <exon start="56384" stop="56278"/>
                    <exon start="56162" stop="56033"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>753</number_coding_nucleotides>
                  <number_encoded_amino_acids>251</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RMGRGRVELKRIENKISRQVTFSKRRSGLLKKANEISVLCDADVALIVFSTKGKLFEYSSNDSSMESILERYERCSYAERQMNANDSDPKENWSVEYPKLMSRIELLQRNIRHYMGQDLDPLSLRELQSIEQQIDTSLKRIRSRKNQLMHESISELQKKEKALQEQNNLITKKLKENEKTQPNSSGQNSATVHVFPSHSHHQLPNLTIGGAFGGMNRDGSGQAHHYPGSNNNNNNSSLIPPWMLRHVSNEG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="58421" e_stop="57829"/>
            <exon e_start="57089" e_stop="57025"/>
            <exon e_start="56861" e_stop="56762"/>
            <exon e_start="56682" e_stop="56641"/>
            <exon e_start="56512" e_stop="56483"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="58421" e_stop="57829" e_length="593"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="57828" i_stop="57090" i_length="739"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="57089" e_stop="57025" e_length="65"/>
          </exon>
          <intron i_serial="2" don_prob="0.971" acc_prob="0.999">
            <gDNA_intron_boundary i_start="57024" i_stop="56862" i_length="163"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="56861" e_stop="56762" e_length="100"/>
          </exon>
          <intron i_serial="3" don_prob="0.985" acc_prob="0.985">
            <gDNA_intron_boundary i_start="56761" i_stop="56683" i_length="79"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="56682" e_stop="56641" e_length="42"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.993">
            <gDNA_intron_boundary i_start="56640" i_stop="56513" i_length="128"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="56512" e_stop="56483" e_length="30"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58421" stop="57829"/>
              <exon start="57089" stop="57025"/>
              <exon start="56861" stop="56762"/>
              <exon start="56682" stop="56641"/>
              <exon start="56512" stop="56483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U583379" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAAAGCAAGATGATGTTTAACTACGTACTTACCTTCAACCCTTTACCACGATCTCGATATCCTCCTATCTAAGATCATATTCCGTAAATTCATGCATGTGTGTCTAATTAATCACCCTTATCCAATATTTTTTTAGTCTACCTCTACCCCTCTTTAAACCCACCATTGTCGATTTCTCACACGTTCTCACTTGGGCATTTGCACATCTCTACGTCACAGACTCAATCATCTCAGCTTCGCTTCTCTCATCTTAGCCACCATGGATGCCACTCTAATAAATAGATCTATCTCTTTCATTTTGAATTGATATACCTGACCTGATTAAAATGCAAAAAACTTCTCATTCTAAAATAACCTAGTTAGAATCCTATTTAAGTAATATTGTATATCAATGGAAAAATTACCAACTGTAAATGAAAAAATAAAATAAAATTTTATACTATTAGGTCATGTAGTTAAGTTCAATATGCTTACTGGCTTATAATTTTTTTTTTGTTTATTTTTTGATTTTAGTATGGAAAGTATTCTTGAAAGATATGAAAGATGCTCATATGCAGAGAGACAGATGAATGCTAATGATTCTGATCCCAAG : GAAAATTGGAGTGTGGAGTATCCGAAGCTCATGTCAAGAATTGAACTTTTACAAAGAAATATAAG : GCATTACATGGGTCAGGATCTGGACCCTCTCAGTTTGCGTGAGCTCCAGAGTATAGAGCAACAGATTGATACTTCATTAAAGAGAATTAGAAGCAGGAAG : AATCAACTGATGCACGAGTCCATTTCTGAGCTGCAGAAAAAG : GAGAAAGCGCTCCAAGAACAAAACAACTTG</gDNA_template>
            <first_frame> G  K  Q  D  D  V  *  L  R  T  Y  L  Q  P  F  T  T  I  S  I  S  S  Y  L  R  S  Y  S  V  N  S  C  M  C  V  *  L  I  T  L  I  Q  Y  F  F  S  L  P  L  P  L  F  K  P  T  I  V  D  F  S  H  V  L  T  W  A  F  A  H  L  Y  V  T  D  S  I  I  S  A  S  L  L  S  S  *  P  P  W  M  P  L  *  *  I  D  L  S  L  S  F  *  I  D  I  P  D  L  I  K  M  Q  K  T  S  H  S  K  I  T  *  L  E  S  Y  L  S  N  I  V  Y  Q  W  K  N  Y  Q  L  *  M  K  K  *  N  K  I  L  Y  Y  *  V  M  *  L  S  S  I  C  L  L  A  Y  N  F  F  F  V  Y  F  L  I  L  V  W  K  V  F  L  K  D  M  K  D  A  H  M  Q  R  D  R  *  M  L  M  I  L  I  P  R :   K  I  G  V  W  S  I  R  S  S  C  Q  E  L  N  F  Y  K  E  I  *   : G  I  T  W  V  R  I  W  T  L  S  V  C  V  S  S  R  V  *  S  N  R  L  I  L  H  *  R  E  L  E  A  G  R :   I  N  *  C  T  S  P  F  L  S  C  R  K  R :   R  K  R  S  K  N  K  T  T   </first_frame>
            <second_frame>  E  S  K  M  M  F  N  Y  V  L  T  F  N  P  L  P  R  S  R  Y  P  P  I  *  D  H  I  P  *  I  H  A  C  V  S  N  *  S  P  L  S  N  I  F  L  V  Y  L  Y  P  S  L  N  P  P  L  S  I  S  H  T  F  S  L  G  H  L  H  I  S  T  S  Q  T  Q  S  S  Q  L  R  F  S  H  L  S  H  H  G  C  H  S  N  K  *  I  Y  L  F  H  F  E  L  I  Y  L  T  *  L  K  C  K  K  L  L  I  L  K  *  P  S  *  N  P  I  *  V  I  L  Y  I  N  G  K  I  T  N  C  K  *  K  N  K  I  K  F  Y  T  I  R  S  C  S  *  V  Q  Y  A  Y  W  L  I  I  F  F  L  F  I  F  *  F  *  Y  G  K  Y  S  *  K  I  *  K  M  L  I  C  R  E  T  D  E  C  *  *  F  *  S  Q   : G  K  L  E  C  G  V  S  E  A  H  V  K  N  *  T  F  T  K  K  Y  K  :  A  L  H  G  S  G  S  G  P  S  Q  F  A  *  A  P  E  Y  R  A  T  D  *  Y  F  I  K  E  N  *  K  Q  E   : E  S  T  D  A  R  V  H  F  *  A  A  E  K   : G  E  S  A  P  R  T  K  Q  L  </second_frame>
            <third_frame>   K  A  R  *  C  L  T  T  Y  L  P  S  T  L  Y  H  D  L  D  I  L  L  S  K  I  I  F  R  K  F  M  H  V  C  L  I  N  H  P  Y  P  I  F  F  *  S  T  S  T  P  L  *  T  H  H  C  R  F  L  T  R  S  H  L  G  I  C  T  S  L  R  H  R  L  N  H  L  S  F  A  S  L  I  L  A  T  M  D  A  T  L  I  N  R  S  I  S  F  I  L  N  *  Y  T  *  P  D  *  N  A  K  N  F  S  F  *  N  N  L  V  R  I  L  F  K  *  Y  C  I  S  M  E  K  L  P  T  V  N  E  K  I  K  *  N  F  I  L  L  G  H  V  V  K  F  N  M  L  T  G  L  *  F  F  F  C  L  F  F  D  F  S  M  E  S  I  L  E  R  Y  E  R  C  S  Y  A  E  R  Q  M  N  A  N  D  S  D  P  K  :  E  N  W  S  V  E  Y  P  K  L  M  S  R  I  E  L  L  Q  R  N  I  R :   H  Y  M  G  Q  D  L  D  P  L  S  L  R  E  L  Q  S  I  E  Q  Q  I  D  T  S  L  K  R  I  R  S  R  K  :  N  Q  L  M  H  E  S  I  S  E  L  Q  K  K  :  E  K  A  L  Q  E  Q  N  N  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0092M23.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57936" stop="57829"/>
                    <exon start="57089" stop="57025"/>
                    <exon start="56861" stop="56762"/>
                    <exon start="56682" stop="56641"/>
                    <exon start="56512" stop="56483"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>345</number_coding_nucleotides>
                  <number_encoded_amino_acids>115</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFFCLFFDFSMESILERYERCSYAERQMNANDSDPKENWSVEYPKLMSRIELLQRNIRHYMGQDLDPLSLRELQSIEQQIDTSLKRIRSRKNQLMHESISELQKKEKALQEQNNL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="74615" PGL_stop="70059"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74615" e_stop="74096"/>
            <exon e_start="72627" e_stop="72549"/>
            <exon e_start="72310" e_stop="72246"/>
            <exon e_start="71381" e_stop="71282"/>
            <exon e_start="71203" e_stop="71162"/>
            <exon e_start="71083" e_stop="71042"/>
            <exon e_start="70741" e_stop="70602"/>
            <exon e_start="70383" e_stop="70059"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.917" e_score="0.998"/>
          <exon-intron don_prob="0.840" acc_prob="0.890" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.604" e_score="1.000"/>
          <exon-intron don_prob="0.943" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="74615" e_stop="74096" e_length="520"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.917">
            <gDNA_intron_boundary i_start="74095" i_stop="72628" i_length="1468"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="72627" e_stop="72549" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="0.840" acc_prob="0.890">
            <gDNA_intron_boundary i_start="72548" i_stop="72311" i_length="238"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="72310" e_stop="72246" e_length="65"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.998">
            <gDNA_intron_boundary i_start="72245" i_stop="71382" i_length="864"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="71381" e_stop="71282" e_length="100"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.604">
            <gDNA_intron_boundary i_start="71281" i_stop="71204" i_length="78"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="71203" e_stop="71162" e_length="42"/>
          </exon>
          <intron i_serial="5" don_prob="0.943" acc_prob="0.983">
            <gDNA_intron_boundary i_start="71161" i_stop="71084" i_length="78"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="71083" e_stop="71042" e_length="42"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="0.994">
            <gDNA_intron_boundary i_start="71041" i_stop="70742" i_length="300"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="70741" e_stop="70602" e_length="140"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="70601" i_stop="70384" i_length="218"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="70383" e_stop="70059" e_length="325"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74615" stop="74096"/>
              <exon start="72627" stop="72549"/>
              <exon start="72310" stop="72246"/>
              <exon start="71381" stop="71282"/>
              <exon start="71203" stop="71162"/>
              <exon start="71083" stop="71042"/>
              <exon start="70741" stop="70602"/>
              <exon start="70383" stop="70059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U581481" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTAAAGCTCTAAGGTATCTAAATTTGGAGTACCTAAGCAAATCCTAAAGTTAAAACAATGAATCCCTAAAGAAGATAGGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA : TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG : CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG : ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGG : ACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAG : GAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAG : ATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGG : GTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCCCAAAACGTGAATGGTATGATACCTGGTTGGATGCTGTGAATGAAAAAGTCCTTTATCTTCAGCTTTGCATAAAAGCATATGAAGTATATTTCTATAATAATAAAGGAAAACTCCAGTACCTTTATTTTCAGCAAAATACCCTAATTAAGGTGAACGTTGTGAACCATTTTCTTTGCATAAAAACAAACTTGTTTGCTTGGAAATGTTTTATTTTATTCAAATCATAATGTGGATGTTGCTGAATATGATGATTATTAGCATCTTTCATGTGAATTC</gDNA_template>
            <first_frame> P  K  A  L  R  Y  L  N  L  E  Y  L  S  K  S  *  S  *  N  N  E  S  L  K  K  I  G  R  N  A  I  D  K  N  N  P  C  S  L  F  L  S  L  N  I  E  I  Q  P  K  Q  K  T  K  V  D  K  N  P  F  F  L  S  L  C  V  C  V  S  S  *  G  L  H  F  F  H  N  F  G  C  F  S  R  R  E  K  R  I  *  E  L  A  K  R  R  N  *  *  E  N  K  V  E  K  D  H  Q  R  K  E  G  W  V  E  E  E  L  S  *  R  G  *  K  T  R  *  I  D  K  S  L  L  Q  R  G  E  M  D  C  S  K  K  L  M  N  Y  L  C  F  V  M  L  K  L  L  Y  S  F  S  L  I  V  E  N  S  M  N  S  A  A  Q  T   : I  C  S  K  H  L  I  G  T  K  S  A  A  M  E  H  W  K  S  I  D  Q  S  K  I  M  S :   K  A  A  I  G  N  T  *  N  S  K  P  N  M  S  R  C  S  D  I  K   : D  T  F  L  E  M  S  W  G  L  *  L  *  M  I  L  S  I  L  K  S  N  *  I  L  P  S  N  T  L  G  P  P  G :   H  K  *  C  L  I  S  F  L  I  F  K  L  R :   R  N  C  G  M  R  L  T  R  F  L  K  E  R :   W  K  K  Y  M  L  K  T  T  C  N  K  H  G  V  V  V  S  K  V  S  I  M  V  S  S  N  I  L  N  L  R  V  S  S  N  L  *  S  A  T  L  P  C  K  L   : G  T  I  Q  *  Q  L  Q  A  K  *  Q  Q  *  Q  M  P  K  T  *  M  V  *  Y  L  V  G  C  C  E  *  K  S  P  L  S  S  A  L  H  K  S  I  *  S  I  F  L  *  *  *  R  K  T  P  V  P  L  F  S  A  K  Y  P  N  *  G  E  R  C  E  P  F  S  L  H  K  N  K  L  V  C  L  E  M  F  Y  F  I  Q  I  I  M  W  M  L  L  N  M  M  I  I  S  I  F  H  V  N   </first_frame>
            <second_frame>  L  K  L  *  G  I  *  I  W  S  T  *  A  N  P  K  V  K  T  M  N  P  *  R  R  *  E  E  M  P  *  I  K  T  T  H  V  H  F  F  S  L  *  T  L  K  F  N  Q  N  K  K  Q  K  L  I  R  I  L  S  F  F  L  C  V  C  V  C  L  A  R  V  C  I  S  F  T  I  L  V  V  S  V  G  E  K  R  G  S  K  S  *  P  R  E  E  I  S  E  K  I  K  *  K  K  I  I  R  G  R  R  D  G  *  R  K  S  *  A  E  E  D  R  K  Q  D  K  *  T  S  H  F  C  K  E  E  K  W  I  A  Q  K  S  L  *  T  I  C  A  L  *  C  *  S  C  S  T  R  F  L  *  S  W  K  T  L  *  I  L  Q  H  K  Q  :  Y  A  Q  N  T  *  *  V  P  K  V  Q  L  W  N  I  G  S  Q  S  I  N  Q  R  *  *   : A  K  Q  L  *  G  I  L  E  T  Q  S  Q  I  *  V  A  A  A  I  S  K  :  T  P  S  W  R  *  V  G  A  S  D  Y  R  *  S  *  A  S  *  S  P  T  R  Y  F  P  Q  T  H  *  V  H  Q   : D  T  N  D  A  *  S  A  F  *  S  S  N  *   : G  E  I  V  E  *  G  *  Q  G  S  *  K  K   : D  G  R  N  I  C  *  K  Q  H  A  T  S  M  G  W  W  *  A  K  S  Q  L  W  S  A  A  T  S  S  I  S  G  F  L  P  T  S  R  V  Q  L  F  L  A  N  W  :  V  R  S  N  N  N  F  K  P  N  N  S  S  N  K  C  P  K  R  E  W  Y  D  T  W  L  D  A  V  N  E  K  V  L  Y  L  Q  L  C  I  K  A  Y  E  V  Y  F  Y  N  N  K  G  K  L  Q  Y  L  Y  F  Q  Q  N  T  L  I  K  V  N  V  V  N  H  F  L  C  I  K  T  N  L  F  A  W  K  C  F  I  L  F  K  S  *  C  G  C  C  *  I  *  *  L  L  A  S  F  M  *  I  </second_frame>
            <third_frame>   *  S  S  K  V  S  K  F  G  V  P  K  Q  I  L  K  L  K  Q  *  I  P  K  E  D  R  K  K  C  H  R  *  K  Q  P  M  F  T  F  S  L  S  K  H  *  N  S  T  K  T  K  N  K  S  *  *  E  S  F  L  S  F  F  V  C  V  C  V  *  L  G  F  A  F  L  S  Q  F  W  L  F  Q  *  E  R  K  E  D  L  R  V  S  Q  E  K  K  L  V  R  K  *  S  R  K  R  S  S  E  E  G  G  M  G  R  G  R  V  E  L  K  R  I  E  N  K  I  N  R  Q  V  T  F  A  K  R  R  N  G  L  L  K  K  A  Y  E  L  S  V  L  C  D  A  E  V  A  L  L  V  F  S  N  R  G  K  L  Y  E  F  C  S  T  N  N :   M  L  K  T  L  D  R  Y  Q  K  C  S  Y  G  T  L  E  V  N  R  S  I  K  D  N  E  :  Q  S  S  Y  R  E  Y  L  K  L  K  A  K  Y  E  S  L  Q  R  Y  Q  R :   H  L  L  G  D  E  L  G  P  L  T  I  D  D  L  E  H  L  E  V  Q  L  D  T  S  L  K  H  I  R  S  T  R  :  T  Q  M  M  L  D  Q  L  S  D  L  Q  T  K  :  E  K  L  W  N  E  A  N  K  V  L  E  R  K  :  M  E  E  I  Y  A  E  N  N  M  Q  Q  A  W  G  G  G  E  Q  S  L  N  Y  G  Q  Q  Q  H  P  Q  S  Q  G  F  F  Q  P  L  E  C  N  S  S  L  Q  I  G :   Y  D  P  I  T  T  S  S  Q  I  T  A  V  T  N  A  Q  N  V  N  G  M  I  P  G  W  M  L  *  M  K  K  S  F  I  F  S  F  A  *  K  H  M  K  Y  I  S  I  I  I  K  E  N  S  S  T  F  I  F  S  K  I  P  *  L  R  *  T  L  *  T  I  F  F  A  *  K  Q  T  C  L  L  G  N  V  L  F  Y  S  N  H  N  V  D  V  A  E  Y  D  D  Y  *  H  L  S  C  E  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0092M23.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74310" stop="74096"/>
                    <exon start="72627" stop="72549"/>
                    <exon start="72310" stop="72246"/>
                    <exon start="71381" stop="71282"/>
                    <exon start="71203" stop="71162"/>
                    <exon start="71083" stop="71042"/>
                    <exon start="70741" stop="70602"/>
                    <exon start="70383" stop="70296"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>768</number_coding_nucleotides>
                  <number_encoded_amino_acids>256</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRKRSSEEGGMGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALLVFSNRGKLYEFCSTNNMLKTLDRYQKCSYGTLEVNRSIKDNEQSSYREYLKLKAKYESLQRYQRHLLGDELGPLTIDDLEHLEVQLDTSLKHIRSTRTQMMLDQLSDLQTKEKLWNEANKVLERKMEEIYAENNMQQAWGGGEQSLNYGQQQHPQSQGFFQPLECNSSLQIGYDPITTSSQITAVTNAQNVNGMIPGWML*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="88449" PGL_stop="97480"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94701" e_stop="95321"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="94701" e_stop="95321" e_length="621"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94701" stop="94923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U600659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94730" stop="95092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U604614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94792" stop="95321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U604818" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGATGTGCGAACTCGATATTTTACACGACTCTCTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTAACGTTGGCTTGCCACGCATTACTTGACTGTAAAACTCTCACTCTTACCGAACTTGGCCGTAACCTGCCAACCAAAGCGAGAACAAAACATAACATCAAACGAATCGACCGATTGTTAGGTAATCGTCACCTCCACAAAGAGCGACTCGCTGTATACCGTTGGCATGCTAGCTTTATCTGTTCGGGCAATACGATGCCCATTGTACTTGTTGACTGGTCTGATATTCGTGAGCAAAAACGACTTATGGTATTGCGAGCTTCAGTCGCACTACACGGTCGTTCTGTTACTCTTTATGAGAAAGCGTTCCCGCTTTCAGAGCAATGTTCAAAGAAAGCTCATGACCAATTTCTAGCCGACCTTGCGAGCATTCTACCGAGTAACACCACACCGCTCATTGTCAGTGATGCTGGCTTTAAAGTGCCATGGTATAAATCCG</gDNA_template>
            <first_frame> L  M  N  P  L  M  I  L  V  K  I  I  K  L  R  W  I  H  I  L  S  Y  D  Q  M  V  S  R  K  I  N  N  Q  T  T  R  C  A  N  S  I  F  Y  T  T  L  F  T  N  S  A  P  N  Y  T  *  N  D  S  T  A  *  R  W  L  A  T  H  Y  L  T  V  K  L  S  L  L  P  N  L  A  V  T  C  Q  P  K  R  E  Q  N  I  T  S  N  E  S  T  D  C  *  V  I  V  T  S  T  K  S  D  S  L  Y  T  V  G  M  L  A  L  S  V  R  A  I  R  C  P  L  Y  L  L  T  G  L  I  F  V  S  K  N  D  L  W  Y  C  E  L  Q  S  H  Y  T  V  V  L  L  L  F  M  R  K  R  S  R  F  Q  S  N  V  Q  R  K  L  M  T  N  F  *  P  T  L  R  A  F  Y  R  V  T  P  H  R  S  L  S  V  M  L  A  L  K  C  H  G  I  N  P </first_frame>
            <second_frame>  *  *  I  P  *  *  F  W  *  K  S  L  S  *  G  G  Y  T  S  C  H  M  I  K  W  F  R  E  K  S  I  I  R  Q  Q  D  V  R  T  R  Y  F  T  R  L  S  L  P  I  L  P  R  I  T  L  K  T  T  Q  Q  L  N  V  G  L  P  R  I  T  *  L  *  N  S  H  S  Y  R  T  W  P  *  P  A  N  Q  S  E  N  K  T  *  H  Q  T  N  R  P  I  V  R  *  S  S  P  P  Q  R  A  T  R  C  I  P  L  A  C  *  L  Y  L  F  G  Q  Y  D  A  H  C  T  C  *  L  V  *  Y  S  *  A  K  T  T  Y  G  I  A  S  F  S  R  T  T  R  S  F  C  Y  S  L  *  E  S  V  P  A  F  R  A  M  F  K  E  S  S  *  P  I  S  S  R  P  C  E  H  S  T  E  *  H  H  T  A  H  C  Q  *  C  W  L  *  S  A  M  V  *  I   </second_frame>
            <third_frame>   D  E  S  P  N  D  F  G  K  N  H  *  V  K  V  D  T  H  L  V  I  *  S  N  G  F  A  K  N  Q  *  S  D  N  K  M  C  E  L  D  I  L  H  D  S  L  Y  Q  F  C  P  E  L  H  L  K  R  L  N  S  L  T  L  A  C  H  A  L  L  D  C  K  T  L  T  L  T  E  L  G  R  N  L  P  T  K  A  R  T  K  H  N  I  K  R  I  D  R  L  L  G  N  R  H  L  H  K  E  R  L  A  V  Y  R  W  H  A  S  F  I  C  S  G  N  T  M  P  I  V  L  V  D  W  S  D  I  R  E  Q  K  R  L  M  V  L  R  A  S  V  A  L  H  G  R  S  V  T  L  Y  E  K  A  F  P  L  S  E  Q  C  S  K  K  A  H  D  Q  F  L  A  D  L  A  S  I  L  P  S  N  T  T  P  L  I  V  S  D  A  G  F  K  V  P  W  Y  K  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0092M23.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94796" stop="95320"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>525</number_coding_nucleotides>
                  <number_encoded_amino_acids>175</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SDNKMCELDILHDSLYQFCPELHLKRLNSLTLACHALLDCKTLTLTELGRNLPTKARTKHNIKRIDRLLGNRHLHKERLAVYRWHASFICSGNTMPIVLVDWSDIREQKRLMVLRASVALHGRSVTLYEKAFPLSEQCSKKAHDQFLADLASILPSNTTPLIVSDAGFKVPWYKS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="94238" e_stop="94696"/>
            <exon e_start="96035" e_stop="96123"/>
            <exon e_start="96262" e_stop="96339"/>
            <exon e_start="96818" e_stop="97016"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.998"/>
          <exon-intron don_prob="0.994" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="94238" e_stop="94696" e_length="459"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="94697" i_stop="96034" i_length="1338"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="96035" e_stop="96123" e_length="89"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.994">
            <gDNA_intron_boundary i_start="96124" i_stop="96261" i_length="138"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="96262" e_stop="96339" e_length="78"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.999">
            <gDNA_intron_boundary i_start="96340" i_stop="96817" i_length="478"/>
          </intron>
          <exon e_serial="4" e_score="0.995">
            <gDNA_exon_boundary e_start="96818" e_stop="97016" e_length="199"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94238" stop="94696"/>
              <exon start="96035" stop="96123"/>
              <exon start="96262" stop="96339"/>
              <exon start="96818" stop="97016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U589418" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCACAAATGTGAAGGTTGATCTTGTAATGGGGCTTCGAATTTGTTGAAGGAAAATATAAATTCAGTTAGGAATGCCAGTCCTTCAATCCACTCACAGTTCTACATTGATGAATTTGACAAGTAATGGCATGACTTTTACTGCTGGCACAGCAGCGCAATTTTTTTGGGGGGCAAAGAAACTTTTGTCCTTCACTCGTTATTTGGAGACATTTGTTATTCACTGCAGATCCTATTGATGAGAAATAGTTCAATCAGTTATTTATTCAGTGCAGATCATATTGACGAGGAACAGTTTTATCGGTTATTTTTGGTGGATGTTTTCTAAATTCTGATCCAAGAGTGTGCTTTTGCAGGAACTACCTGATATTCCTCTGTTTCTGAGTTTGCACAATCTCTGTGCAACACTAAAATGCACTTCTCCCTCGGCAGTAATATTTCGCTCTGCTGTGATCAACGCAG : GATATCGCATATCAGGGACTCATGTGAATCCTTTGGGGTTGAAAACAGATGCTCCTATGAATGTCATTTGGGATATCATGCGTTGCTGG : GTCAGAAATCATCCTGTGAAAGCACAACCATCTGACCAGTCTGGAAGTGTGATTCTTGCTAAGGAGCCTGTTCTGCAG : GCTAATTTTGCTCGGGCTGTTGCATCCCTTAGCCAGGCACAAGCCAAGAAGGTTGCGCGTTTCCTCCCTAATCCTGAGAGGAATTGGGGTCCAAAACTAAGGGCAGGCCGGCAGATCACCAGTAAGCATGTGTCTCTTTTGGGTCCTAAAGCATTGAATGCAATTAGCAACCATGGGGATGGCGAGGGTAGCAACAATG</gDNA_template>
            <first_frame> P  Q  M  *  R  L  I  L  *  W  G  F  E  F  V  E  G  K  Y  K  F  S  *  E  C  Q  S  F  N  P  L  T  V  L  H  *  *  I  *  Q  V  M  A  *  L  L  L  L  A  Q  Q  R  N  F  F  G  G  Q  R  N  F  C  P  S  L  V  I  W  R  H  L  L  F  T  A  D  P  I  D  E  K  *  F  N  Q  L  F  I  Q  C  R  S  Y  *  R  G  T  V  L  S  V  I  F  G  G  C  F  L  N  S  D  P  R  V  C  F  C  R  N  Y  L  I  F  L  C  F  *  V  C  T  I  S  V  Q  H  *  N  A  L  L  P  R  Q  *  Y  F  A  L  L  *  S  T  Q  :  D  I  A  Y  Q  G  L  M  *  I  L  W  G  *  K  Q  M  L  L  *  M  S  F  G  I  S  C  V  A  G :   S  E  I  I  L  *  K  H  N  H  L  T  S  L  E  V  *  F  L  L  R  S  L  F  C  R :   L  I  L  L  G  L  L  H  P  L  A  R  H  K  P  R  R  L  R  V  S  S  L  I  L  R  G  I  G  V  Q  N  *  G  Q  A  G  R  S  P  V  S  M  C  L  F  W  V  L  K  H  *  M  Q  L  A  T  M  G  M  A  R  V  A  T  M </first_frame>
            <second_frame>  H  K  C  E  G  *  S  C  N  G  A  S  N  L  L  K  E  N  I  N  S  V  R  N  A  S  P  S  I  H  S  Q  F  Y  I  D  E  F  D  K  *  W  H  D  F  Y  C  W  H  S  S  A  I  F  L  G  G  K  E  T  F  V  L  H  S  L  F  G  D  I  C  Y  S  L  Q  I  L  L  M  R  N  S  S  I  S  Y  L  F  S  A  D  H  I  D  E  E  Q  F  Y  R  L  F  L  V  D  V  F  *  I  L  I  Q  E  C  A  F  A  G  T  T  *  Y  S  S  V  S  E  F  A  Q  S  L  C  N  T  K  M  H  F  S  L  G  S  N  I  S  L  C  C  D  Q  R  R :   I  S  H  I  R  D  S  C  E  S  F  G  V  E  N  R  C  S  Y  E  C  H  L  G  Y  H  A  L  L   : G  Q  K  S  S  C  E  S  T  T  I  *  P  V  W  K  C  D  S  C  *  G  A  C  S  A   : G  *  F  C  S  G  C  C  I  P  *  P  G  T  S  Q  E  G  C  A  F  P  P  *  S  *  E  E  L  G  S  K  T  K  G  R  P  A  D  H  Q  *  A  C  V  S  F  G  S  *  S  I  E  C  N  *  Q  P  W  G  W  R  G  *  Q  Q   </second_frame>
            <third_frame>   T  N  V  K  V  D  L  V  M  G  L  R  I  C  *  R  K  I  *  I  Q  L  G  M  P  V  L  Q  S  T  H  S  S  T  L  M  N  L  T  S  N  G  M  T  F  T  A  G  T  A  A  Q  F  F  W  G  A  K  K  L  L  S  F  T  R  Y  L  E  T  F  V  I  H  C  R  S  Y  *  *  E  I  V  Q  S  V  I  Y  S  V  Q  I  I  L  T  R  N  S  F  I  G  Y  F  W  W  M  F  S  K  F  *  S  K  S  V  L  L  Q  E  L  P  D  I  P  L  F  L  S  L  H  N  L  C  A  T  L  K  C  T  S  P  S  A  V  I  F  R  S  A  V  I  N  A   : G  Y  R  I  S  G  T  H  V  N  P  L  G  L  K  T  D  A  P  M  N  V  I  W  D  I  M  R  C  W  :  V  R  N  H  P  V  K  A  Q  P  S  D  Q  S  G  S  V  I  L  A  K  E  P  V  L  Q  :  A  N  F  A  R  A  V  A  S  L  S  Q  A  Q  A  K  K  V  A  R  F  L  P  N  P  E  R  N  W  G  P  K  L  R  A  G  R  Q  I  T  S  K  H  V  S  L  L  G  P  K  A  L  N  A  I  S  N  H  G  D  G  E  G  S  N  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0092M23.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94570" stop="94696"/>
                    <exon start="96035" stop="96123"/>
                    <exon start="96262" stop="96339"/>
                    <exon start="96818" stop="97015"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>492</number_coding_nucleotides>
                  <number_encoded_amino_acids>164</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKSVLLQELPDIPLFLSLHNLCATLKCTSPSAVIFRSAVINAGYRISGTHVNPLGLKTDAPMNVIWDIMRCWVRNHPVKAQPSDQSGSVILAKEPVLQANFARAVASLSQAQAKKVARFLPNPERNWGPKLRAGRQITSKHVSLLGPKALNAISNHGDGEGSNN</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0092M23.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94362" stop="94562"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WHDFYCWHSSAIFLGGKETFVLHSLFGDICYSLQILLMRNSSISYLFSADHIDEEQFYRLFLVDVF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="88449" e_stop="88719"/>
            <exon e_start="90694" e_stop="90978"/>
            <exon e_start="91075" e_stop="91162"/>
            <exon e_start="91596" e_stop="91717"/>
            <exon e_start="91935" e_stop="92074"/>
            <exon e_start="92159" e_stop="92231"/>
            <exon e_start="92542" e_stop="92630"/>
            <exon e_start="92723" e_stop="92828"/>
            <exon e_start="93559" e_stop="93771"/>
            <exon e_start="94591" e_stop="94696"/>
            <exon e_start="96035" e_stop="96123"/>
            <exon e_start="96262" e_stop="96339"/>
            <exon e_start="96818" e_stop="97480"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.081" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.888" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.948" acc_prob="0.111" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.623" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="88449" e_stop="88719" e_length="271"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.081">
            <gDNA_intron_boundary i_start="88720" i_stop="90693" i_length="1974"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="90694" e_stop="90978" e_length="285"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.982">
            <gDNA_intron_boundary i_start="90979" i_stop="91074" i_length="96"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="91075" e_stop="91162" e_length="88"/>
          </exon>
          <intron i_serial="3" don_prob="0.888" acc_prob="0.952">
            <gDNA_intron_boundary i_start="91163" i_stop="91595" i_length="433"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="91596" e_stop="91717" e_length="122"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.995">
            <gDNA_intron_boundary i_start="91718" i_stop="91934" i_length="217"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="91935" e_stop="92074" e_length="140"/>
          </exon>
          <intron i_serial="5" don_prob="0.948" acc_prob="0.111">
            <gDNA_intron_boundary i_start="92075" i_stop="92158" i_length="84"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="92159" e_stop="92231" e_length="73"/>
          </exon>
          <intron i_serial="6" don_prob="0.981" acc_prob="0.959">
            <gDNA_intron_boundary i_start="92232" i_stop="92541" i_length="310"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="92542" e_stop="92630" e_length="89"/>
          </exon>
          <intron i_serial="7" don_prob="0.988" acc_prob="0.623">
            <gDNA_intron_boundary i_start="92631" i_stop="92722" i_length="92"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="92723" e_stop="92828" e_length="106"/>
          </exon>
          <intron i_serial="8" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="92829" i_stop="93558" i_length="730"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="93559" e_stop="93771" e_length="213"/>
          </exon>
          <intron i_serial="9" don_prob="0.976" acc_prob="0.966">
            <gDNA_intron_boundary i_start="93772" i_stop="94590" i_length="819"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="94591" e_stop="94696" e_length="106"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="94697" i_stop="96034" i_length="1338"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="96035" e_stop="96123" e_length="89"/>
          </exon>
          <intron i_serial="11" don_prob="0.994" acc_prob="0.994">
            <gDNA_intron_boundary i_start="96124" i_stop="96261" i_length="138"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="96262" e_stop="96339" e_length="78"/>
          </exon>
          <intron i_serial="12" don_prob="0.989" acc_prob="0.999">
            <gDNA_intron_boundary i_start="96340" i_stop="96817" i_length="478"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="96818" e_stop="97480" e_length="663"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88449" stop="88719"/>
              <exon start="90694" stop="90978"/>
              <exon start="91075" stop="91162"/>
              <exon start="91596" stop="91717"/>
              <exon start="91935" stop="92074"/>
              <exon start="92159" stop="92231"/>
              <exon start="92542" stop="92630"/>
              <exon start="92723" stop="92828"/>
              <exon start="93559" stop="93771"/>
              <exon start="94591" stop="94696"/>
              <exon start="96035" stop="96123"/>
              <exon start="96262" stop="96339"/>
              <exon start="96818" stop="97480"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U583817" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCCGAAGAGCAAGCACTAGGGTTTTTTGTGGTGCATTCCTATATTTATTGTCTCCACTTTCATTCCCCAAAATTTCTTTTTATTTGAGCTTCATAATTGCCGCAATTAGGCGTTAGTTTCTCCATTATCACACAAACCGTCAATGGCGGGTGACAACGGAAACAAGCAGAATGGAACTTCTTTTGATCTCAATGACTTCACCATCATCAAAGAAGGAGATGCTGAGATTCTTATGCATGCCAAAAATGAAGTTTTCTACAACAATTCCCAG : GTGAATAATAGAGACATGTCTATAGCTGTTTTGAGGACATTTATATCACAACGAAAGCTAGAACATGACGCAATGTTAGCTAGACGAACCAAGGCTGGAAATAAGGCACCTAATGCTAAAGTGGAAAACCCAGGTGATTCAGTGCAGCATAATGGTGAATCCACTGATGGATCGGAAGTCTTGAAAGACGCATCCCATGGTGAATCATCTAGCATTCCAGTGGAACAGAATAAAAATCTGCGGGGAAAAGGCCGAGAAGAACTAAAGCCTCCACGAGTTCTCGAG : GCTCTCTCAGCTTCTGGATTGAGGGCTTTAAGGTATGCTCGTGAAGTAGAAGGAATTAGCCAGGTCGTGGCCCTTGACAATGACAAAG : CCTCTGTGGAAGCTTGCAGGAGAAACATTAAGTTTAATGGTTCAGTGGCATGCTCTAAGGTGGAATCTCACCTTGCTGATGCAAGGGTTTATATGCTTACCCACCCAAACGAATTTGATGTG : GTTGATCTCGATCCTTATGGAGCACCTTCTGTGTTCTTAGACTCAGCAGTCCAATCTGTTGCTGATGGAGGAATGTTGATGTGTACTGCAACTGATATGGCAGTCTTATGTGCAGCAAATGGAGAAGTTTGCTATTCCAA : ATATGGCTCCTATCCTTTGAGAGGAAAATATTGTCATGAAATGGCTTTGCGGATCCTTCTTGCATCTATTGAG : AGCCATGCAAATCGATATAAGAGATATATAGTTCCAGTATTATCTGTTCAGATGGATTTCTATGTTCGCGTTTTTGTTCGTATATACAC : TTCTGCAAGTGATGTGAAAAATACTCCTTTGAAGCTCTCATATGTCTATCAATGCATTGGCTGCGACTCATTTCATCTTCAGACAGTTGGGAGGACAGTCTCAAAG : GATAAGAGTGTCCGATGCCTCCCTGGATTTGGCCCTGCAGTTCCTCAAGAGTGTAGTGATTGTGGTAAGAAATTCAACATGGGTGGACCCATATGGTCTGCCCCCATTCATGATCAAGAATGGGTAGCTGCCATGCTTGCAAATGTGAAATCAATGAAGGAACGCTATCCTGCTTATGAGCGGATCTCTGCTGTATTGACAACTATATCAGAG : GAACTACCTGATATTCCTCTGTTTCTGAGTTTGCACAATCTCTGTGCAACACTAAAATGCACTTCTCCCTCGGCAGTAATATTTCGCTCTGCTGTGATCAACGCAG : GATATCGCATATCAGGGACTCATGTGAATCCTTTGGGGTTGAAAACAGATGCTCCTATGAATGTCATTTGGGATATCATGCGTTGCTGG : GTCAGAAATCATCCTGTGAAAGCACAACCATCTGACCAGTCTGGAAGTGTGATTCTTGCTAAGGAGCCTGTTCTGCAG : GCTAATTTTGCTCGGGCTGTTGCATCCCTTAGCCAGGCACAAGCCAAGAAGGTTGCGCGTTTCCTCCCTAATCCTGAGAGGAATTGGGGTCCAAAACTAAGGGCAGGCCGGCAGATCACCAGTAAGCATGTGTCTCTTTTGGGTCCTAAAGCATTGAATGCAATTAGCAACCATGGGGATGGCGAGGGTAGCAACAATGAGAACGGCGATGTCAGCAACCATGAGAATGGCGATGGTAGCAACCATGAGAATGGTAATGGTAGCAACCATGAGGATGTCGAGGAGCCTGCAGCCAAGCGTAAGAAGACCGAAGAATCTGATTCATAACTTATATATCTTGGCCAAGTGTCTGCAGTTTTTATCCCATCATAATCCATCTCTTCTGCTGCATTTTCTTGCAGAGTGAGATCCATCTTCTTTCTGATAACTGTGAAAACGTCTATCGATAATGGGGAGGATTTCATCTTGTTTATCTCAAGTATACTTTTTAATTTTTAAAGGTATTTTAGGCTATTTATATTTATTTTGTTTGTCCCTTTTTTCCTTCATTTCAATCTTAATTCCAGTGCTGTATTAAATTTTGTTTTTCATTTTCATTTATCAGAAAACTACTCTGTAACATGGCTTGCGTTGTCTATTTGATCTTTTATGTCGACGAACATT</gDNA_template>
            <first_frame> A  E  E  Q  A  L  G  F  F  V  V  H  S  Y  I  Y  C  L  H  F  H  S  P  K  F  L  F  I  *  A  S  *  L  P  Q  L  G  V  S  F  S  I  I  T  Q  T  V  N  G  G  *  Q  R  K  Q  A  E  W  N  F  F  *  S  Q  *  L  H  H  H  Q  R  R  R  C  *  D  S  Y  A  C  Q  K  *  S  F  L  Q  Q  F  P   : G  E  *  *  R  H  V  Y  S  C  F  E  D  I  Y  I  T  T  K  A  R  T  *  R  N  V  S  *  T  N  Q  G  W  K  *  G  T  *  C  *  S  G  K  P  R  *  F  S  A  A  *  W  *  I  H  *  W  I  G  S  L  E  R  R  I  P  W  *  I  I  *  H  S  S  G  T  E  *  K  S  A  G  K  R  P  R  R  T  K  A  S  T  S  S  R   : G  S  L  S  F  W  I  E  G  F  K  V  C  S  *  S  R  R  N  *  P  G  R  G  P  *  Q  *  Q  S :   L  C  G  S  L  Q  E  K  H  *  V  *  W  F  S  G  M  L  *  G  G  I  S  P  C  *  C  K  G  L  Y  A  Y  P  P  K  R  I  *  C   : G  *  S  R  S  L  W  S  T  F  C  V  L  R  L  S  S  P  I  C  C  *  W  R  N  V  D  V  Y  C  N  *  Y  G  S  L  M  C  S  K  W  R  S  L  L  F  Q  :  I  W  L  L  S  F  E  R  K  I  L  S  *  N  G  F  A  D  P  S  C  I  Y  *   : E  P  C  K  S  I  *  E  I  Y  S  S  S  I  I  C  S  D  G  F  L  C  S  R  F  C  S  Y  I  H  :  F  C  K  *  C  E  K  Y  S  F  E  A  L  I  C  L  S  M  H  W  L  R  L  I  S  S  S  D  S  W  E  D  S  L  K   : G  *  E  C  P  M  P  P  W  I  W  P  C  S  S  S  R  V  *  *  L  W  *  E  I  Q  H  G  W  T  H  M  V  C  P  H  S  *  S  R  M  G  S  C  H  A  C  K  C  E  I  N  E  G  T  L  S  C  L  *  A  D  L  C  C  I  D  N  Y  I  R   : G  T  T  *  Y  S  S  V  S  E  F  A  Q  S  L  C  N  T  K  M  H  F  S  L  G  S  N  I  S  L  C  C  D  Q  R  R :   I  S  H  I  R  D  S  C  E  S  F  G  V  E  N  R  C  S  Y  E  C  H  L  G  Y  H  A  L  L   : G  Q  K  S  S  C  E  S  T  T  I  *  P  V  W  K  C  D  S  C  *  G  A  C  S  A   : G  *  F  C  S  G  C  C  I  P  *  P  G  T  S  Q  E  G  C  A  F  P  P  *  S  *  E  E  L  G  S  K  T  K  G  R  P  A  D  H  Q  *  A  C  V  S  F  G  S  *  S  I  E  C  N  *  Q  P  W  G  W  R  G  *  Q  Q  *  E  R  R  C  Q  Q  P  *  E  W  R  W  *  Q  P  *  E  W  *  W  *  Q  P  *  G  C  R  G  A  C  S  Q  A  *  E  D  R  R  I  *  F  I  T  Y  I  S  W  P  S  V  C  S  F  Y  P  I  I  I  H  L  F  C  C  I  F  L  Q  S  E  I  H  L  L  S  D  N  C  E  N  V  Y  R  *  W  G  G  F  H  L  V  Y  L  K  Y  T  F  *  F  L  K  V  F  *  A  I  Y  I  Y  F  V  C  P  F  F  P  S  F  Q  S  *  F  Q  C  C  I  K  F  C  F  S  F  S  F  I  R  K  L  L  C  N  M  A  C  V  V  Y  L  I  F  Y  V  D  E  H  </first_frame>
            <second_frame>  P  K  S  K  H  *  G  F  L  W  C  I  P  I  F  I  V  S  T  F  I  P  Q  N  F  F  L  F  E  L  H  N  C  R  N  *  A  L  V  S  P  L  S  H  K  P  S  M  A  G  D  N  G  N  K  Q  N  G  T  S  F  D  L  N  D  F  T  I  I  K  E  G  D  A  E  I  L  M  H  A  K  N  E  V  F  Y  N  N  S  Q  :  V  N  N  R  D  M  S  I  A  V  L  R  T  F  I  S  Q  R  K  L  E  H  D  A  M  L  A  R  R  T  K  A  G  N  K  A  P  N  A  K  V  E  N  P  G  D  S  V  Q  H  N  G  E  S  T  D  G  S  E  V  L  K  D  A  S  H  G  E  S  S  S  I  P  V  E  Q  N  K  N  L  R  G  K  G  R  E  E  L  K  P  P  R  V  L  E  :  A  L  S  A  S  G  L  R  A  L  R  Y  A  R  E  V  E  G  I  S  Q  V  V  A  L  D  N  D  K   : A  S  V  E  A  C  R  R  N  I  K  F  N  G  S  V  A  C  S  K  V  E  S  H  L  A  D  A  R  V  Y  M  L  T  H  P  N  E  F  D  V  :  V  D  L  D  P  Y  G  A  P  S  V  F  L  D  S  A  V  Q  S  V  A  D  G  G  M  L  M  C  T  A  T  D  M  A  V  L  C  A  A  N  G  E  V  C  Y  S  K :   Y  G  S  Y  P  L  R  G  K  Y  C  H  E  M  A  L  R  I  L  L  A  S  I  E  :  S  H  A  N  R  Y  K  R  Y  I  V  P  V  L  S  V  Q  M  D  F  Y  V  R  V  F  V  R  I  Y  T :   S  A  S  D  V  K  N  T  P  L  K  L  S  Y  V  Y  Q  C  I  G  C  D  S  F  H  L  Q  T  V  G  R  T  V  S  K  :  D  K  S  V  R  C  L  P  G  F  G  P  A  V  P  Q  E  C  S  D  C  G  K  K  F  N  M  G  G  P  I  W  S  A  P  I  H  D  Q  E  W  V  A  A  M  L  A  N  V  K  S  M  K  E  R  Y  P  A  Y  E  R  I  S  A  V  L  T  T  I  S  E  :  E  L  P  D  I  P  L  F  L  S  L  H  N  L  C  A  T  L  K  C  T  S  P  S  A  V  I  F  R  S  A  V  I  N  A   : G  Y  R  I  S  G  T  H  V  N  P  L  G  L  K  T  D  A  P  M  N  V  I  W  D  I  M  R  C  W  :  V  R  N  H  P  V  K  A  Q  P  S  D  Q  S  G  S  V  I  L  A  K  E  P  V  L  Q  :  A  N  F  A  R  A  V  A  S  L  S  Q  A  Q  A  K  K  V  A  R  F  L  P  N  P  E  R  N  W  G  P  K  L  R  A  G  R  Q  I  T  S  K  H  V  S  L  L  G  P  K  A  L  N  A  I  S  N  H  G  D  G  E  G  S  N  N  E  N  G  D  V  S  N  H  E  N  G  D  G  S  N  H  E  N  G  N  G  S  N  H  E  D  V  E  E  P  A  A  K  R  K  K  T  E  E  S  D  S  *  L  I  Y  L  G  Q  V  S  A  V  F  I  P  S  *  S  I  S  S  A  A  F  S  C  R  V  R  S  I  F  F  L  I  T  V  K  T  S  I  D  N  G  E  D  F  I  L  F  I  S  S  I  L  F  N  F  *  R  Y  F  R  L  F  I  F  I  L  F  V  P  F  F  L  H  F  N  L  N  S  S  A  V  L  N  F  V  F  H  F  H  L  S  E  N  Y  S  V  T  W  L  A  L  S  I  *  S  F  M  S  T  N  I </second_frame>
            <third_frame>   R  R  A  S  T  R  V  F  C  G  A  F  L  Y  L  L  S  P  L  S  F  P  K  I  S  F  Y  L  S  F  I  I  A  A  I  R  R  *  F  L  H  Y  H  T  N  R  Q  W  R  V  T  T  E  T  S  R  M  E  L  L  L  I  S  M  T  S  P  S  S  K  K  E  M  L  R  F  L  C  M  P  K  M  K  F  S  T  T  I  P  R :   *  I  I  E  T  C  L  *  L  F  *  G  H  L  Y  H  N  E  S  *  N  M  T  Q  C  *  L  D  E  P  R  L  E  I  R  H  L  M  L  K  W  K  T  Q  V  I  Q  C  S  I  M  V  N  P  L  M  D  R  K  S  *  K  T  H  P  M  V  N  H  L  A  F  Q  W  N  R  I  K  I  C  G  E  K  A  E  K  N  *  S  L  H  E  F  S  R :   L  S  Q  L  L  D  *  G  L  *  G  M  L  V  K  *  K  E  L  A  R  S  W  P  L  T  M  T  K  :  P  L  W  K  L  A  G  E  T  L  S  L  M  V  Q  W  H  A  L  R  W  N  L  T  L  L  M  Q  G  F  I  C  L  P  T  Q  T  N  L  M  W :   L  I  S  I  L  M  E  H  L  L  C  S  *  T  Q  Q  S  N  L  L  L  M  E  E  C  *  C  V  L  Q  L  I  W  Q  S  Y  V  Q  Q  M  E  K  F  A  I  P   : N  M  A  P  I  L  *  E  E  N  I  V  M  K  W  L  C  G  S  F  L  H  L  L  R :   A  M  Q  I  D  I  R  D  I  *  F  Q  Y  Y  L  F  R  W  I  S  M  F  A  F  L  F  V  Y  T   : L  L  Q  V  M  *  K  I  L  L  *  S  S  H  M  S  I  N  A  L  A  A  T  H  F  I  F  R  Q  L  G  G  Q  S  Q  R :   I  R  V  S  D  A  S  L  D  L  A  L  Q  F  L  K  S  V  V  I  V  V  R  N  S  T  W  V  D  P  Y  G  L  P  P  F  M  I  K  N  G  *  L  P  C  L  Q  M  *  N  Q  *  R  N  A  I  L  L  M  S  G  S  L  L  Y  *  Q  L  Y  Q  R :   N  Y  L  I  F  L  C  F  *  V  C  T  I  S  V  Q  H  *  N  A  L  L  P  R  Q  *  Y  F  A  L  L  *  S  T  Q  :  D  I  A  Y  Q  G  L  M  *  I  L  W  G  *  K  Q  M  L  L  *  M  S  F  G  I  S  C  V  A  G :   S  E  I  I  L  *  K  H  N  H  L  T  S  L  E  V  *  F  L  L  R  S  L  F  C  R :   L  I  L  L  G  L  L  H  P  L  A  R  H  K  P  R  R  L  R  V  S  S  L  I  L  R  G  I  G  V  Q  N  *  G  Q  A  G  R  S  P  V  S  M  C  L  F  W  V  L  K  H  *  M  Q  L  A  T  M  G  M  A  R  V  A  T  M  R  T  A  M  S  A  T  M  R  M  A  M  V  A  T  M  R  M  V  M  V  A  T  M  R  M  S  R  S  L  Q  P  S  V  R  R  P  K  N  L  I  H  N  L  Y  I  L  A  K  C  L  Q  F  L  S  H  H  N  P  S  L  L  L  H  F  L  A  E  *  D  P  S  S  F  *  *  L  *  K  R  L  S  I  M  G  R  I  S  S  C  L  S  Q  V  Y  F  L  I  F  K  G  I  L  G  Y  L  Y  L  F  C  L  S  L  F  S  F  I  S  I  L  I  P  V  L  Y  *  I  L  F  F  I  F  I  Y  Q  K  T  T  L  *  H  G  L  R  C  L  F  D  L  L  C  R  R  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0092M23.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88558" stop="88719"/>
                    <exon start="90694" stop="90978"/>
                    <exon start="91075" stop="91162"/>
                    <exon start="91596" stop="91717"/>
                    <exon start="91935" stop="92074"/>
                    <exon start="92159" stop="92231"/>
                    <exon start="92542" stop="92630"/>
                    <exon start="92723" stop="92828"/>
                    <exon start="93559" stop="93771"/>
                    <exon start="94591" stop="94696"/>
                    <exon start="96035" stop="96123"/>
                    <exon start="96262" stop="96339"/>
                    <exon start="96818" stop="97144"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1875</number_coding_nucleotides>
                  <number_encoded_amino_acids>625</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALVSPLSHKPSMAGDNGNKQNGTSFDLNDFTIIKEGDAEILMHAKNEVFYNNSQVNNRDMSIAVLRTFISQRKLEHDAMLARRTKAGNKAPNAKVENPGDSVQHNGESTDGSEVLKDASHGESSSIPVEQNKNLRGKGREELKPPRVLEALSASGLRALRYAREVEGISQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPNEFDVVDLDPYGAPSVFLDSAVQSVADGGMLMCTATDMAVLCAANGEVCYSKYGSYPLRGKYCHEMALRILLASIESHANRYKRYIVPVLSVQMDFYVRVFVRIYTSASDVKNTPLKLSYVYQCIGCDSFHLQTVGRTVSKDKSVRCLPGFGPAVPQECSDCGKKFNMGGPIWSAPIHDQEWVAAMLANVKSMKERYPAYERISAVLTTISEELPDIPLFLSLHNLCATLKCTSPSAVIFRSAVINAGYRISGTHVNPLGLKTDAPMNVIWDIMRCWVRNHPVKAQPSDQSGSVILAKEPVLQANFARAVASLSQAQAKKVARFLPNPERNWGPKLRAGRQITSKHVSLLGPKALNAISNHGDGEGSNNENGDVSNHENGDGSNHENGNGSNHEDVEEPAAKRKKTEESDS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="96022" PGL_stop="95283"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96022" e_stop="95283"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.944">
            <gDNA_exon_boundary e_start="96022" e_stop="95283" e_length="740"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96022" stop="95347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U589391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95855" stop="95283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U589393" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCCCCTCATAATTTCCCCAAAGCGTAACCATGTGTGAATAAATTTTGAGCTAGTAGGGTTGCAGCCACGAGTAAGTCTTCCCTTGTTATTGTGTAGCCAGAATGCCGCAAAACTTCCATGCCTAAGCGAACTGTTGAGAGTACGTTTCGATTTCTGACTGTGTTAGCCTGGAAGTGCTTGTCCCAACCTTGTTTCTGAGCATGAACGCCCGCAAGCCAACATGTTAGTTGAAGCATCAGGGCGATTAGCAGCATGATATCAAAACGCTCTGAGCTGCTCGTTCGGCTATGGCGTAGGCCTAGTCCGTAGGCAGGACTTTTCAAGTCTCGGAAGGTTTCTTCAATCTGCATTCGCTTCGAATAGATATTAACAAGTTGTTTGGGTGTTCGAATTTCAACAGGTAAGTTAGTTGCTAGAACCCATGGCTCCTTTGCCGACGCTGAGTAGATTTTAGGTGACGGGTGGTGACAATGAGTCCGTGTCGAGCGCTGATTTTTTCGGCCTTTAGAGCGAGATTTATACAATAGAATTTGGCATGAGATTGGATTGCTTTTAGTCAGCCTCTTATAGCCTAAAGTCTTTGAGTGACTAGATGACATATCATGTAAGTTGCTGATAGGTTTCCAGTTTTCCGCTCCTAGGTCTGCATATTGTACTTTTCCTCTTACTCGACTTAACCAGTACCAACCCAGCTTCTCAACGGATTTATACCATGGCACTTTAAAGCCAGCATCACTGA</gDNA_template>
            <first_frame> I  P  S  *  F  P  Q  S  V  T  M  C  E  *  I  L  S  *  *  G  C  S  H  E  *  V  F  P  C  Y  C  V  A  R  M  P  Q  N  F  H  A  *  A  N  C  *  E  Y  V  S  I  S  D  C  V  S  L  E  V  L  V  P  T  L  F  L  S  M  N  A  R  K  P  T  C  *  L  K  H  Q  G  D  *  Q  H  D  I  K  T  L  *  A  A  R  S  A  M  A  *  A  *  S  V  G  R  T  F  Q  V  S  E  G  F  F  N  L  H  S  L  R  I  D  I  N  K  L  F  G  C  S  N  F  N  R  *  V  S  C  *  N  P  W  L  L  C  R  R  *  V  D  F  R  *  R  V  V  T  M  S  P  C  R  A  L  I  F  S  A  F  R  A  R  F  I  Q  *  N  L  A  *  D  W  I  A  F  S  Q  P  L  I  A  *  S  L  *  V  T  R  *  H  I  M  *  V  A  D  R  F  P  V  F  R  S  *  V  C  I  L  Y  F  S  S  Y  S  T  *  P  V  P  T  Q  L  L  N  G  F  I  P  W  H  F  K  A  S  I  T   </first_frame>
            <second_frame>  S  P  H  N  F  P  K  A  *  P  C  V  N  K  F  *  A  S  R  V  A  A  T  S  K  S  S  L  V  I  V  *  P  E  C  R  K  T  S  M  P  K  R  T  V  E  S  T  F  R  F  L  T  V  L  A  W  K  C  L  S  Q  P  C  F  *  A  *  T  P  A  S  Q  H  V  S  *  S  I  R  A  I  S  S  M  I  S  K  R  S  E  L  L  V  R  L  W  R  R  P  S  P  *  A  G  L  F  K  S  R  K  V  S  S  I  C  I  R  F  E  *  I  L  T  S  C  L  G  V  R  I  S  T  G  K  L  V  A  R  T  H  G  S  F  A  D  A  E  *  I  L  G  D  G  W  *  Q  *  V  R  V  E  R  *  F  F  R  P  L  E  R  D  L  Y  N  R  I  W  H  E  I  G  L  L  L  V  S  L  L  *  P  K  V  F  E  *  L  D  D  I  S  C  K  L  L  I  G  F  Q  F  S  A  P  R  S  A  Y  C  T  F  P  L  T  R  L  N  Q  Y  Q  P  S  F  S  T  D  L  Y  H  G  T  L  K  P  A  S  L  </second_frame>
            <third_frame>   P  L  I  I  S  P  K  R  N  H  V  *  I  N  F  E  L  V  G  L  Q  P  R  V  S  L  P  L  L  L  C  S  Q  N  A  A  K  L  P  C  L  S  E  L  L  R  V  R  F  D  F  *  L  C  *  P  G  S  A  C  P  N  L  V  S  E  H  E  R  P  Q  A  N  M  L  V  E  A  S  G  R  L  A  A  *  Y  Q  N  A  L  S  C  S  F  G  Y  G  V  G  L  V  R  R  Q  D  F  S  S  L  G  R  F  L  Q  S  A  F  A  S  N  R  Y  *  Q  V  V  W  V  F  E  F  Q  Q  V  S  *  L  L  E  P  M  A  P  L  P  T  L  S  R  F  *  V  T  G  G  D  N  E  S  V  S  S  A  D  F  F  G  L  *  S  E  I  Y  T  I  E  F  G  M  R  L  D  C  F  *  S  A  S  Y  S  L  K  S  L  S  D  *  M  T  Y  H  V  S  C  *  *  V  S  S  F  P  L  L  G  L  H  I  V  L  F  L  L  L  D  L  T  S  T  N  P  A  S  Q  R  I  Y  T  M  A  L  *  S  Q  H  H  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLe0092M23.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="99433" PGL_stop="98646"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99433" e_stop="99091"/>
            <exon e_start="98996" e_stop="98746"/>
            <exon e_start="98667" e_stop="98646"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.905" acc_prob="1.000" e_score="0.985"/>
          <exon-intron don_prob="0.996" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="99433" e_stop="99091" e_length="343"/>
          </exon>
          <intron i_serial="1" don_prob="0.905" acc_prob="1.000">
            <gDNA_intron_boundary i_start="99090" i_stop="98997" i_length="94"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="98996" e_stop="98746" e_length="251"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.997">
            <gDNA_intron_boundary i_start="98745" i_stop="98668" i_length="78"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="98667" e_stop="98646" e_length="22"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99433" stop="99091"/>
              <exon start="98996" stop="98746"/>
              <exon start="98667" stop="98646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U587322" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCAAAATTTAAAAAGAAAAAAAAAAAATCTCTCGAAATGGCTACTGTTCCTTTGAAAGATGAGCTAGACATTGTGATACCAACGATTAGAAACTTAGATTTTCTTGAGATGTGGAGGCCATTTTTCGAACAATATCATTTAATTATTGTGCAAGATGGTGATCCTTCAAAGACTATTAAAGTTCCTGATGGCTTTGATTATGAGCTCTACAATCGTAATGATATTAACAAAATTTTGGGTCCGAGGGCTTCTTGTATTTCGTTCAAAGACTCGGCTTGTCGTTGCTTTGGTTACATGGTGTCCAAGAAGAAGTATATTTACACTATTGATGATGATTGCTTC : GTTGCAAAGGACCCAAGTGGGAAAGATATTAATGCATTGGAACAACACATAAAGAATCTTCTTTGTCCATCAACTCCCTATTTTTTCAACACACTTTATGATCCATTTAGAGATGGTGCTGATTTTGTGCGTGGATACCCTTTTAGTCTACGTGAGGGTGTTTCAACTGCAGTCTCTCATGGATTATGGCTCAACATTCCTGATTATGATGCACCTACTCAACTTGTCAAGCCTCTTGAGAGGAATACTAG : GTACGTTGATACGGTGTTGACG</gDNA_template>
            <first_frame> S  K  I  *  K  E  K  K  K  I  S  R  N  G  Y  C  S  F  E  R  *  A  R  H  C  D  T  N  D  *  K  L  R  F  S  *  D  V  E  A  I  F  R  T  I  S  F  N  Y  C  A  R  W  *  S  F  K  D  Y  *  S  S  *  W  L  *  L  *  A  L  Q  S  *  *  Y  *  Q  N  F  G  S  E  G  F  L  Y  F  V  Q  R  L  G  L  S  L  L  W  L  H  G  V  Q  E  E  V  Y  L  H  Y  *  *  *  L  L   : R  C  K  G  P  K  W  E  R  Y  *  C  I  G  T  T  H  K  E  S  S  L  S  I  N  S  L  F  F  Q  H  T  L  *  S  I  *  R  W  C  *  F  C  A  W  I  P  F  *  S  T  *  G  C  F  N  C  S  L  S  W  I  M  A  Q  H  S  *  L  *  C  T  Y  S  T  C  Q  A  S  *  E  E  Y  *  :  V  R  *  Y  G  V  D  </first_frame>
            <second_frame>  A  K  F  K  K  K  K  K  K  S  L  E  M  A  T  V  P  L  K  D  E  L  D  I  V  I  P  T  I  R  N  L  D  F  L  E  M  W  R  P  F  F  E  Q  Y  H  L  I  I  V  Q  D  G  D  P  S  K  T  I  K  V  P  D  G  F  D  Y  E  L  Y  N  R  N  D  I  N  K  I  L  G  P  R  A  S  C  I  S  F  K  D  S  A  C  R  C  F  G  Y  M  V  S  K  K  K  Y  I  Y  T  I  D  D  D  C  F  :  V  A  K  D  P  S  G  K  D  I  N  A  L  E  Q  H  I  K  N  L  L  C  P  S  T  P  Y  F  F  N  T  L  Y  D  P  F  R  D  G  A  D  F  V  R  G  Y  P  F  S  L  R  E  G  V  S  T  A  V  S  H  G  L  W  L  N  I  P  D  Y  D  A  P  T  Q  L  V  K  P  L  E  R  N  T  R :   Y  V  D  T  V  L  T </second_frame>
            <third_frame>   Q  N  L  K  R  K  K  K  N  L  S  K  W  L  L  F  L  *  K  M  S  *  T  L  *  Y  Q  R  L  E  T  *  I  F  L  R  C  G  G  H  F  S  N  N  I  I  *  L  L  C  K  M  V  I  L  Q  R  L  L  K  F  L  M  A  L  I  M  S  S  T  I  V  M  I  L  T  K  F  W  V  R  G  L  L  V  F  R  S  K  T  R  L  V  V  A  L  V  T  W  C  P  R  R  S  I  F  T  L  L  M  M  I  A  S :   L  Q  R  T  Q  V  G  K  I  L  M  H  W  N  N  T  *  R  I  F  F  V  H  Q  L  P  I  F  S  T  H  F  M  I  H  L  E  M  V  L  I  L  C  V  D  T  L  L  V  Y  V  R  V  F  Q  L  Q  S  L  M  D  Y  G  S  T  F  L  I  M  M  H  L  L  N  L  S  S  L  L  R  G  I  L   : G  T  L  I  R  C  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0092M23.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99432" stop="99091"/>
                    <exon start="98996" stop="98746"/>
                    <exon start="98667" stop="98646"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>615</number_coding_nucleotides>
                  <number_encoded_amino_acids>205</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AKFKKKKKKSLEMATVPLKDELDIVIPTIRNLDFLEMWRPFFEQYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINKILGPRASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPYFFNTLYDPFRDGADFVRGYPFSLREGVSTAVSHGLWLNIPDYDAPTQLVKPLERNTRYVDTVLT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 36 chains have been computed
$ 
$ memory statistics:
$ 40200 bytes spliced alignments in total
$ 19 spliced alignments have been stored
$ 2115 bytes was the average size of a spliced alignment
$ 16240 bytes predicted gene locations in total
$ 8 predicted gene locations have been stored
$ 2030 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 39 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 11:09:00
-->
